Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
ZNF157	7712	broad.mit.edu	37	X	47272239	47272239	+	Missense_Mutation	SNP	C	C	G			TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chrX:47272239C>G	ENST00000377073.3	+	4	853	c.767C>G	c.(766-768)tCt>tGt	p.S256C		NM_003446.3	NP_003437.2	P51786	ZN157_HUMAN	zinc finger protein 157	256					negative regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(1)|endometrium(2)|large_intestine(2)|lung(5)|upper_aerodigestive_tract(1)	11						AAAACCTTTTCTGAGAAGGCA	0.428000													8	25					0	0	1	0	0
ZNF83	55769	broad.mit.edu	37	19	53116804	53116804	+	Silent	SNP	G	G	A			TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chr19:53116804G>A	ENST00000597597.1	-	2	3267	c.1014C>T	c.(1012-1014)atC>atT	p.I338I	ZNF83_ENST00000301096.3_Silent_p.I338I|ZNF83_ENST00000541777.2_Silent_p.I338I|ZNF83_ENST00000601257.1_Intron|ZNF83_ENST00000536937.1_Silent_p.I338I|ZNF83_ENST00000545872.1_Silent_p.I338I|ZNF83_ENST00000544146.1_Silent_p.I338I|ZNF83_ENST00000391789.4_Silent_p.I310I|ZNF83_ENST00000600714.1_Intron			P51522	ZNF83_HUMAN	zinc finger protein 83	338						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding	p.I338I(1)		breast(1)|endometrium(1)|kidney(1)|large_intestine(8)|lung(3)|ovary(1)|prostate(1)|upper_aerodigestive_tract(2)	18				OV - Ovarian serous cystadenocarcinoma(262;0.00841)|GBM - Glioblastoma multiforme(134;0.0244)		CTCCAGTGTGGATTCTCCAGT	0.413000													5	167					0	0	1	0	0
ZNF157	7712	broad.mit.edu	37	X	47271771	47271771	+	Missense_Mutation	SNP	C	C	T			TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chrX:47271771C>T	ENST00000377073.3	+	4	385	c.299C>T	c.(298-300)tCt>tTt	p.S100F		NM_003446.3	NP_003437.2	P51786	ZN157_HUMAN	zinc finger protein 157	100					negative regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(1)|endometrium(2)|large_intestine(2)|lung(5)|upper_aerodigestive_tract(1)	11						tttaaaggatctctctcactg	0.373000													11	21					0	0	1	0	0
NCKAP1L	3071	broad.mit.edu	37	12	54912463	54912463	+	Missense_Mutation	SNP	C	C	T			TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chr12:54912463C>T	ENST00000293373.6	+	14	1446	c.1367C>T	c.(1366-1368)tCc>tTc	p.S456F	NCKAP1L_ENST00000545638.2_Missense_Mutation_p.S406F	NM_005337.4	NP_005328.2	P55160	NCKPL_HUMAN	NCK-associated protein 1-like	456					actin polymerization-dependent cell motility|B cell homeostasis|B cell receptor signaling pathway|cortical actin cytoskeleton organization|erythrocyte development|maintenance of cell polarity|myeloid cell homeostasis|negative regulation of apoptosis|negative regulation of interleukin-17 production|negative regulation of interleukin-6 production|negative regulation of myosin-light-chain-phosphatase activity|neutrophil chemotaxis|positive regulation of actin filament polymerization|positive regulation of B cell differentiation|positive regulation of B cell proliferation|positive regulation of CD4-positive, alpha-beta T cell differentiation|positive regulation of CD8-positive, alpha-beta T cell differentiation|positive regulation of cell adhesion mediated by integrin|positive regulation of erythrocyte differentiation|positive regulation of gamma-delta T cell differentiation|positive regulation of neutrophil chemotaxis|positive regulation of phagocytosis, engulfment|positive regulation of T cell proliferation|protein complex assembly|response to drug|T cell homeostasis	cytosol|integral to plasma membrane|membrane fraction|SCAR complex	protein complex binding|protein kinase activator activity|Rac GTPase activator activity			NS(3)|breast(2)|central_nervous_system(2)|cervix(1)|endometrium(10)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(12)|lung(37)|ovary(3)|prostate(3)|skin(3)|stomach(2)	80						GAGGAGGAGTCCATCATCATG	0.498000													17	81					0	0	1	0	0
ZNF536	9745	broad.mit.edu	37	19	30936514	30936514	+	Missense_Mutation	SNP	C	C	T			TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chr19:30936514C>T	ENST00000355537.3	+	2	2192	c.2045C>T	c.(2044-2046)tCg>tTg	p.S682L		NM_014717.1	NP_055532.1	O15090	ZN536_HUMAN	zinc finger protein 536	682					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			NS(3)|breast(6)|endometrium(10)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(22)|lung(119)|ovary(7)|prostate(4)|skin(4)|upper_aerodigestive_tract(1)|urinary_tract(3)	182	Esophageal squamous(110;0.0834)					GAGTCCCAGTCGGTGAGCCGC	0.711000													4	24					0	0	1	0	0
RAET1K	0	broad.mit.edu	37	6	150322175	150322175	+	RNA	SNP	T	T	C			TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chr6:150322175T>C	ENST00000533735.1	-	0	701					NR_024045.1																						AGGAGGAAAGTCTGTCCATTG	0.512000													5	34					0	0	1	0	0
GPR128	84873	broad.mit.edu	37	3	100362211	100362211	+	Missense_Mutation	SNP	C	C	T			TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chr3:100362211C>T	ENST00000273352.3	+	7	1068	c.800C>T	c.(799-801)gCg>gTg	p.A267V	GPR128_ENST00000475887.1_Intron	NM_032787.2	NP_116176.2	Q96K78	GP128_HUMAN	G protein-coupled receptor 128	267					neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			NS(1)|autonomic_ganglia(1)|breast(2)|cervix(1)|endometrium(3)|kidney(2)|large_intestine(9)|liver(2)|lung(20)|ovary(3)|prostate(2)|skin(3)|stomach(1)|upper_aerodigestive_tract(4)|urinary_tract(2)	56						TCAGAAAATGCGGTGGGGCCT	0.403000													4	137					0	0	1	0	0
CSMD3	114788	broad.mit.edu	37	8	114449051	114449051	+	Silent	SNP	T	T	A			TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chr8:114449051T>A	ENST00000297405.5	-	1	277	c.33A>T	c.(31-33)gcA>gcT	p.A11A	CSMD3_ENST00000352409.3_Silent_p.A11A|CSMD3_ENST00000455883.2_Silent_p.A11A	NM_198123.1	NP_937756.1	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3	11						integral to membrane|plasma membrane				breast(7)|central_nervous_system(6)|endometrium(44)|haematopoietic_and_lymphoid_tissue(8)|kidney(36)|large_intestine(72)|liver(5)|lung(389)|ovary(24)|prostate(6)|skin(23)|upper_aerodigestive_tract(19)|urinary_tract(7)	646						TGGATTCCTTTGCTCGGCTTT	0.512000										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)	OREG0018933	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	18	98					0	0	1	0	0
RAPGEF4	11069	broad.mit.edu	37	2	173891986	173891986	+	Splice_Site	SNP	C	C	G			TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chr2:173891986C>G	ENST00000264111.6	+	25	2741	c.2555_splice	c.e25+1	p.H852_splice	RAPGEF4_ENST00000540783.1_Splice_Site_p.H700_splice|RAPGEF4_ENST00000397087.3_Splice_Site_p.H709_splice|RAPGEF4_ENST00000539331.1_Splice_Site_p.H700_splice|RAPGEF4_ENST00000409036.1_Splice_Site_p.H853_splice|RAPGEF4_ENST00000397081.3_Splice_Site_p.H853_splice|RAPGEF4_ENST00000535187.1_Splice_Site_p.H633_splice|RAPGEF4_ENST00000538974.1_Splice_Site_p.H682_splice			Q8WZA2	RPGF4_HUMAN	Rap guanine nucleotide exchange factor (GEF) 4	853	Ras-GEF.				blood coagulation|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|regulation of insulin secretion|regulation of protein phosphorylation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cAMP-dependent protein kinase complex|membrane fraction|plasma membrane	cAMP binding|cAMP-dependent protein kinase regulator activity|Ras GTPase binding|Ras guanyl-nucleotide exchange factor activity			breast(1)|central_nervous_system(2)|endometrium(5)|kidney(5)|large_intestine(14)|lung(13)|skin(5)|upper_aerodigestive_tract(1)|urinary_tract(1)	47			OV - Ovarian serous cystadenocarcinoma(117;0.194)			GATAGCAGCCCAGTAAGTATA	0.338000													10	45					0	0	1	0	0
NBPF10	100132406	broad.mit.edu	37	1	145325997	145325997	+	Silent	SNP	A	A	G			TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chr1:145325997A>G	ENST00000342960.5	+	30	3905	c.3870A>G	c.(3868-3870)caA>caG	p.Q1290Q	NBPF10_ENST00000369338.1_Intron|NBPF10_ENST00000369339.2_Intron	NM_001039703.4	NP_001034792.4	A6NDV3	A6NDV3_HUMAN	neuroblastoma breakpoint family, member 10	1290										NS(3)|breast(1)|central_nervous_system(3)|endometrium(12)|kidney(23)|lung(15)|ovary(1)|prostate(7)|skin(6)|urinary_tract(2)	73	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		AAGTCTTGCAAGACTCACTGG	0.468000													4	85					0	0	1	0	0
EFEMP1	2202	broad.mit.edu	37	2	56104957	56104957	+	Silent	SNP	G	G	A	rs139930646		TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chr2:56104957G>A	ENST00000394555.2	-	6	1119	c.684C>T	c.(682-684)tgC>tgT	p.C228C	EFEMP1_ENST00000424836.2_Intron|EFEMP1_ENST00000355426.3_Silent_p.C228C|EFEMP1_ENST00000394554.1_Silent_p.C228C	NM_001039348.2|NM_001039349.2	NP_001034437.1|NP_001034438.1	Q12805	FBLN3_HUMAN	EGF containing fibulin-like extracellular matrix protein 1	228	EGF-like 3; calcium-binding (Potential).				negative regulation of chondrocyte differentiation|peptidyl-tyrosine phosphorylation|regulation of transcription, DNA-dependent|visual perception	extracellular space|proteinaceous extracellular matrix	calcium ion binding|epidermal growth factor receptor activity|epidermal growth factor receptor binding|growth factor activity			NS(1)|breast(2)|endometrium(4)|large_intestine(6)|lung(5)|ovary(5)|pancreas(1)|prostate(2)|skin(1)|upper_aerodigestive_tract(1)	28			LUSC - Lung squamous cell carcinoma(58;0.127)|Lung(47;0.132)			GTGTATTCACGCATCTTTGGT	0.423000													23	92					0	0	1	0	0
ZNF157	7712	broad.mit.edu	37	X	47272505	47272505	+	Missense_Mutation	SNP	C	C	G			TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chrX:47272505C>G	ENST00000377073.3	+	4	1119	c.1033C>G	c.(1033-1035)Ctc>Gtc	p.L345V		NM_003446.3	NP_003437.2	P51786	ZN157_HUMAN	zinc finger protein 157	345					negative regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(1)|endometrium(2)|large_intestine(2)|lung(5)|upper_aerodigestive_tract(1)	11						GAAGATGACTCTCAATAATCA	0.423000													7	25					0	0	1	0	0
PDZD2	23037	broad.mit.edu	37	5	32052789	32052789	+	Missense_Mutation	SNP	C	C	T			TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chr5:32052789C>T	ENST00000438447.1	+	9	2126	c.1738C>T	c.(1738-1740)Cgg>Tgg	p.R580W	PDZD2_ENST00000282493.3_Missense_Mutation_p.R580W			O15018	PDZD2_HUMAN	PDZ domain containing 2	580					cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				NS(2)|breast(4)|central_nervous_system(5)|cervix(2)|endometrium(13)|haematopoietic_and_lymphoid_tissue(1)|kidney(10)|large_intestine(31)|lung(58)|ovary(6)|prostate(2)|skin(8)|stomach(1)|upper_aerodigestive_tract(4)|urinary_tract(1)	148						GAGGCTCATTCGGCCATCCGT	0.483000													4	127					0	0	1	0	0
ITGAL	0	broad.mit.edu	37	16	30518157	30518157	+	Missense_Mutation	SNP	C	C	T			TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chr16:30518157C>T	ENST00000356798.6	+	21	2668	c.2488C>T	c.(2488-2490)Cgc>Tgc	p.R830C	ITGAL_ENST00000433423.2_Intron|ITGAL_ENST00000358164.5_Missense_Mutation_p.R746C	NM_002209.2	NP_002200.2	P20701	ITAL_HUMAN	integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)	830					blood coagulation|heterophilic cell-cell adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response|T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell	integrin complex	cell adhesion molecule binding|receptor activity			breast(1)|central_nervous_system(3)|cervix(1)|endometrium(10)|kidney(4)|large_intestine(12)|lung(32)|ovary(3)|prostate(4)|skin(4)|stomach(1)|upper_aerodigestive_tract(1)	76					Efalizumab(DB00095)	ACTCTCCTTCCGCAAGGTGGA	0.607000													26	98					0	0	1	0	0
ZNF157	7712	broad.mit.edu	37	X	47271775	47271775	+	Silent	SNP	C	C	G			TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chrX:47271775C>G	ENST00000377073.3	+	4	389	c.303C>G	c.(301-303)ctC>ctG	p.L101L		NM_003446.3	NP_003437.2	P51786	ZN157_HUMAN	zinc finger protein 157	101					negative regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(1)|endometrium(2)|large_intestine(2)|lung(5)|upper_aerodigestive_tract(1)	11						aaggatctctctcactgctgt	0.378000													11	22					0	0	1	0	0
HMG20B	10362	broad.mit.edu	37	19	3573797	3573797	+	Splice_Site	SNP	A	A	T			TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chr19:3573797A>T	ENST00000333651.6	+	3	221	c.147_splice	c.e3+1	p.E49_splice	HMG20B_ENST00000585741.1_3'UTR	NM_006339.2	NP_006330.2	Q9P0W2	HM20B_HUMAN	high mobility group 20B	49					blood coagulation|cell cycle|chromatin modification	chromosome|nucleoplasm	DNA binding|sequence-specific DNA binding transcription factor activity			cervix(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0025)|STAD - Stomach adenocarcinoma(1328;0.18)		CACGAGGAGGAGGTGAGAGTC	0.711000													6	24					0	0	1	0	0
PRUNE2	158471	broad.mit.edu	37	9	79322279	79322279	+	Silent	SNP	T	T	C			TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chr9:79322279T>C	ENST00000428286.1	-	8	5034	c.3834A>G	c.(3832-3834)ttA>ttG	p.L1278L	PRUNE2_ENST00000376718.3_Silent_p.L1637L			Q8WUY3	PRUN2_HUMAN	prune homolog 2 (Drosophila)	1637					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity			endometrium(1)|kidney(4)|large_intestine(3)|lung(7)|prostate(1)	16						CAGGACTGGATAAAGAGGAAA	0.368000													3	45					0	0	1	0	0
DIDO1	11083	broad.mit.edu	37	20	61511439	61511439	+	Missense_Mutation	SNP	G	G	A			TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chr20:61511439G>A	ENST00000266070.4	-	16	6194	c.5869C>T	c.(5869-5871)Cca>Tca	p.P1957S	DIDO1_ENST00000395343.1_Missense_Mutation_p.P1957S	NM_033081.2	NP_149072.2	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1	1957	Pro-rich.				apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			NS(6)|breast(5)|central_nervous_system(1)|cervix(3)|endometrium(6)|kidney(1)|large_intestine(17)|lung(39)|ovary(8)|prostate(3)|skin(7)|stomach(2)|upper_aerodigestive_tract(1)	99	Breast(26;5.68e-08)					CTGGGACCTGGCATAAAGTTA	0.587000													4	184					0	0	1	0	0
PRPF4B	8899	broad.mit.edu	37	6	4032911	4032911	+	Missense_Mutation	SNP	C	C	G			TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chr6:4032911C>G	ENST00000337659.6	+	2	1260	c.1160C>G	c.(1159-1161)tCt>tGt	p.S387C	PRPF4B_ENST00000538861.1_Missense_Mutation_p.S373C	NM_003913.4	NP_003904.3	Q13523	PRP4B_HUMAN	pre-mRNA processing factor 4B	387	Arg/Lys-rich (basic).					catalytic step 2 spliceosome	ATP binding|protein binding|protein serine/threonine kinase activity			breast(6)|endometrium(3)|large_intestine(5)|lung(4)|upper_aerodigestive_tract(3)|urinary_tract(1)	22	Ovarian(93;0.0925)	all_hematologic(90;0.0895)				CGGACACTGTCTCCTGGGAGA	0.448000													8	64					0	0	1	0	0
CD79A	0	broad.mit.edu	37	19	42383245	42383245	+	Missense_Mutation	SNP	G	G	T			TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chr19:42383245G>T	ENST00000221972.3	+	2	450	c.265G>T	c.(265-267)Ggt>Tgt	p.G89C	CD79A_ENST00000444740.2_Splice_Site_p.E89_splice	NM_001783.3|NM_021601.3	NP_001774.1|NP_067612.1	P11912	CD79A_HUMAN	CD79a molecule, immunoglobulin-associated alpha	89	Ig-like C2-type.				B cell differentiation|B cell proliferation|B cell receptor signaling pathway	B cell receptor complex|external side of plasma membrane|integral to membrane|membrane raft|multivesicular body	transmembrane receptor activity			large_intestine(3)|lung(3)|ovary(2)|pancreas(1)|prostate(1)|upper_aerodigestive_tract(1)	11						GGACCCCAATGGTACGCTGAT	0.602000			"""O, S"""		DLBCL								7	53					2.0095e-06	2.14808e-06	1	1	0
COL5A1	1289	broad.mit.edu	37	9	137593107	137593107	+	Silent	SNP	C	C	T			TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chr9:137593107C>T	ENST00000371817.3	+	4	996	c.582C>T	c.(580-582)agC>agT	p.S194S	COL5A1_ENST00000464187.1_3'UTR	NM_000093.3|NM_001278074.1	NP_000084.3|NP_001265003.1	P20908	CO5A1_HUMAN	collagen, type V, alpha 1	194	Laminin G-like.|TSP N-terminal.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			NS(1)|breast(3)|central_nervous_system(1)|cervix(1)|endometrium(9)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(26)|liver(2)|lung(36)|ovary(4)|pancreas(4)|prostate(5)|skin(10)|stomach(2)|upper_aerodigestive_tract(2)|urinary_tract(4)	115		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		TCGACCGCAGCGACCACCCCA	0.522000													7	27					0	0	1	0	0
CDC25B	994	broad.mit.edu	37	20	3782946	3782946	+	Missense_Mutation	SNP	T	T	A			TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chr20:3782946T>A	ENST00000245960.5	+	11	1814	c.1117T>A	c.(1117-1119)Tca>Aca	p.S373T	CDC25B_ENST00000344256.6_Missense_Mutation_p.S309T|CDC25B_ENST00000439880.2_Missense_Mutation_p.S359T|CDC25B_ENST00000340833.4_Missense_Mutation_p.S332T|CDC25B_ENST00000379598.5_Missense_Mutation_p.S282T|CDC25B_ENST00000467519.1_3'UTR	NM_004358.3|NM_021872.2|NM_021873.2	NP_004349.1|NP_068658.1|NP_068659.1	P30305	MPIP2_HUMAN	cell division cycle 25B	373					cell division|G2/M transition of mitotic cell cycle|mitosis|positive regulation of cell proliferation	cytosol|microtubule organizing center|nucleoplasm	protein binding|protein tyrosine phosphatase activity			NS(1)|large_intestine(4)|lung(10)|ovary(2)|prostate(1)	18						CGTCCTCCGCTCAAAATCACT	0.587000													20	76					0	0	1	0	0
GBF1	8729	broad.mit.edu	37	10	104140416	104140416	+	Nonsense_Mutation	SNP	G	G	T			TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chr10:104140416G>T	ENST00000369983.3	+	38	5403	c.5143G>T	c.(5143-5145)Gaa>Taa	p.E1715*		NM_001199378.1|NM_001199379.1|NM_004193.2	NP_001186307.1|NP_001186308.1|NP_004184.1	Q92538	GBF1_HUMAN	golgi brefeldin A resistant guanine nucleotide exchange factor 1	1715					COPI coating of Golgi vesicle|post-Golgi vesicle-mediated transport|regulation of ARF protein signal transduction|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane	ARF guanyl-nucleotide exchange factor activity|protein binding			NS(1)|breast(2)|central_nervous_system(1)|cervix(1)|endometrium(14)|kidney(8)|large_intestine(15)|lung(19)|ovary(1)|pancreas(1)|prostate(3)|upper_aerodigestive_tract(3)|urinary_tract(2)	71		Colorectal(252;0.0236)		Epithelial(162;5.16e-08)|all cancers(201;1.19e-06)		CCTACGAGATGAACTCTTCAA	0.567000													37	223					5.71845e-15	6.44625e-15	1	1	0
YKT6	10652	broad.mit.edu	37	7	44250637	44250637	+	Missense_Mutation	SNP	T	T	A			TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chr7:44250637T>A	ENST00000223369.2	+	6	562	c.475T>A	c.(475-477)Tct>Act	p.S159T	YKT6_ENST00000447123.1_3'UTR|YKT6_ENST00000496112.1_Intron	NM_006555.3	NP_006546.1	O15498	YKT6_HUMAN	YKT6 v-SNARE homolog (S. cerevisiae)	159	v-SNARE coiled-coil homology.				ER to Golgi vesicle-mediated transport|protein transport|retrograde transport, endosome to Golgi|vesicle docking involved in exocytosis|vesicle targeting	cytoplasmic vesicle membrane|cytosol|endoplasmic reticulum|endosome|Golgi membrane|integral to plasma membrane|mitochondrion|SNARE complex	protein-cysteine S-palmitoleyltransferase activity|SNAP receptor activity			breast(1)|endometrium(1)|large_intestine(2)|lung(2)|skin(1)	7						CACCATGGAGTCTCTGTTAGA	0.478000													10	49					0	0	1	0	0
OAS3	4940	broad.mit.edu	37	12	113376377	113376377	+	Silent	SNP	C	C	T			TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chr12:113376377C>T	ENST00000228928.7	+	1	221	c.42C>T	c.(40-42)ttC>ttT	p.F14F	OAS3_ENST00000546638.1_3'UTR|OAS3_ENST00000548514.1_Silent_p.F14F|RP1-71H24.1_ENST00000552784.1_RNA|OAS3_ENST00000551007.1_Silent_p.F14F	NM_006187.2	NP_006178.2	Q9Y6K5	OAS3_HUMAN	2'-5'-oligoadenylate synthetase 3, 100kDa	14	OAS domain 1.				interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	microsome	ATP binding|nucleotidyltransferase activity|RNA binding			breast(3)|central_nervous_system(2)|endometrium(2)|kidney(3)|large_intestine(8)|lung(6)|ovary(1)|skin(2)	27						TGGACAGGTTCGTGGCCAGAA	0.726000													4	20					0	0	1	0	0
KIAA1211	57482	broad.mit.edu	37	4	57182747	57182747	+	Nonsense_Mutation	SNP	C	C	T			TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chr4:57182747C>T	ENST00000504228.1	+	6	3184	c.3079C>T	c.(3079-3081)Cag>Tag	p.Q1027*	KIAA1211_ENST00000541073.1_Nonsense_Mutation_p.Q1020*|KIAA1211_ENST00000264229.6_Nonsense_Mutation_p.Q1027*			Q6ZU35	K1211_HUMAN	KIAA1211	1027										endometrium(7)|large_intestine(10)|lung(39)|ovary(2)|prostate(3)|skin(3)|stomach(1)	65	Glioma(25;0.08)|all_neural(26;0.101)					AAGGAAGGGACAGAAGAGGGA	0.652000													3	13					0	0	1	0	0
ZNF157	7712	broad.mit.edu	37	X	47272698	47272698	+	Missense_Mutation	SNP	C	C	T			TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chrX:47272698C>T	ENST00000377073.3	+	4	1312	c.1226C>T	c.(1225-1227)tCa>tTa	p.S409L		NM_003446.3	NP_003437.2	P51786	ZN157_HUMAN	zinc finger protein 157	409					negative regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(1)|endometrium(2)|large_intestine(2)|lung(5)|upper_aerodigestive_tract(1)	11						AGGATGCATTCAGGAGAGAAA	0.413000													9	26					0	0	1	0	0
ATG9A	79065	broad.mit.edu	37	2	220087403	220087403	+	Silent	SNP	G	G	C			TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chr2:220087403G>C	ENST00000409618.1	-	11	2251	c.1812C>G	c.(1810-1812)ctC>ctG	p.L604L	ATG9A_ENST00000409422.1_Silent_p.L543L|ATG9A_ENST00000361242.4_Silent_p.L604L|ATG9A_ENST00000396761.2_Silent_p.L604L			Q7Z3C6	ATG9A_HUMAN	autophagy related 9A	604					autophagic vacuole assembly|protein transport	autophagic vacuole membrane|cytoplasmic vesicle|Golgi apparatus|integral to membrane|late endosome membrane				endometrium(2)|large_intestine(5)|lung(3)|prostate(1)|skin(1)|stomach(1)	13		Renal(207;0.0474)		Epithelial(149;1.37e-06)|all cancers(144;0.000222)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TAGACGTAAAGAGGGCATTTT	0.567000													19	113					0	0	1	0	0
PGM1	5236	broad.mit.edu	37	1	64104431	64104431	+	Silent	SNP	G	G	A			TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chr1:64104431G>A	ENST00000371083.4	+	7	1526	c.1158G>A	c.(1156-1158)gcG>gcA	p.A386A	PGM1_ENST00000371084.3_Silent_p.A368A|PGM1_ENST00000540265.1_Silent_p.A171A	NM_001172818.1	NP_001166289.1	P36871	PGM1_HUMAN	phosphoglucomutase 1	368					cellular calcium ion homeostasis|galactose catabolic process|glucose 1-phosphate metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol	magnesium ion binding|phosphoglucomutase activity			breast(3)|endometrium(1)|kidney(1)|large_intestine(4)|lung(6)|ovary(2)|skin(1)|stomach(1)|upper_aerodigestive_tract(1)	20						TGATGGACGCGAGCAAACTGT	0.468000													10	96					0	0	1	0	0
ZNF157	7712	broad.mit.edu	37	X	47272569	47272569	+	Missense_Mutation	SNP	C	C	A			TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chrX:47272569C>A	ENST00000377073.3	+	4	1183	c.1097C>A	c.(1096-1098)tCt>tAt	p.S366Y		NM_003446.3	NP_003437.2	P51786	ZN157_HUMAN	zinc finger protein 157	366					negative regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(1)|endometrium(2)|large_intestine(2)|lung(5)|upper_aerodigestive_tract(1)	11						TGTGGGAAATCTTTCAGGGTG	0.408000													14	27					2.31682e-05	2.43463e-05	1	1	0
FRG1B	0	broad.mit.edu	37	20	29633900	29633900	+	Missense_Mutation	SNP	A	A	G	rs60081496	by1000genomes	TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chr20:29633900A>G	ENST00000278882.3	+	9	919	c.539A>G	c.(538-540)gAa>gGa	p.E180G	FRG1B_ENST00000358464.4_Missense_Mutation_p.E180G														p.E180G(2)		endometrium(10)|kidney(21)|lung(3)|pancreas(1)|prostate(9)|urinary_tract(9)	53						TAAACAAGAGAACCAAATTGA	0.264000													4	69					0	0	1	0	0
PCDHGA7	0	broad.mit.edu	37	5	140763752	140763752	+	Missense_Mutation	SNP	C	C	T			TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chr5:140763752C>T	ENST00000518325.1	+	1	1286	c.1286C>T	c.(1285-1287)aCt>aTt	p.T429I	PCDHGB3_ENST00000576222.1_Intron|PCDHGB1_ENST00000523390.1_Intron|PCDHGA6_ENST00000517434.1_Intron|PCDHGB2_ENST00000522605.1_Intron|PCDHGA2_ENST00000394576.2_Intron|PCDHGA1_ENST00000517417.1_Intron|PCDHGA4_ENST00000571252.1_Intron|PCDHGA3_ENST00000253812.6_Intron|PCDHGA5_ENST00000518069.1_Intron	NM_018920.2	NP_061743.1														NS(1)|biliary_tract(1)|endometrium(8)|kidney(4)|large_intestine(10)|lung(19)|ovary(1)|skin(1)|stomach(3)|urinary_tract(1)	49			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GATGGTGGAACTCCTCCCTTG	0.448000													7	51					0	0	1	0	0
KLK3	354	broad.mit.edu	37	19	51361464	51361464	+	Missense_Mutation	SNP	C	C	T			TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chr19:51361464C>T	ENST00000360617.3	+	3	386	c.386C>T	c.(385-387)cCt>cTt	p.P129L	KLK3_ENST00000595952.1_Missense_Mutation_p.P86L|KLK3_ENST00000597483.1_Missense_Mutation_p.P86L|KLK3_ENST00000593997.1_Missense_Mutation_p.P129L|KLK3_ENST00000326003.2_Missense_Mutation_p.P129L			P07288	KLK3_HUMAN	kallikrein-related peptidase 3	129	Peptidase S1.				negative regulation of angiogenesis|proteolysis	extracellular region	serine-type endopeptidase activity			breast(1)|cervix(2)|kidney(2)|large_intestine(1)|lung(10)|ovary(1)|pancreas(1)|prostate(3)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	24		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00763)|GBM - Glioblastoma multiforme(134;0.0144)		CTGTCAGAGCCTGCCGAGCTC	0.612000													10	45					0	0	1	0	0
ZNF157	7712	broad.mit.edu	37	X	47272265	47272265	+	Nonsense_Mutation	SNP	C	C	T			TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chrX:47272265C>T	ENST00000377073.3	+	4	879	c.793C>T	c.(793-795)Cag>Tag	p.Q265*		NM_003446.3	NP_003437.2	P51786	ZN157_HUMAN	zinc finger protein 157	265					negative regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(1)|endometrium(2)|large_intestine(2)|lung(5)|upper_aerodigestive_tract(1)	11						CACGATTCATCAGAGAACTCA	0.433000													7	21					0	0	1	0	0
MYH15	22989	broad.mit.edu	37	3	108117615	108117615	+	Missense_Mutation	SNP	G	G	A			TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chr3:108117615G>A	ENST00000273353.3	-	36	5118	c.5062C>T	c.(5062-5064)Cgg>Tgg	p.R1688W		NM_014981.1	NP_055796.1	Q9Y2K3	MYH15_HUMAN	myosin, heavy chain 15	1688						myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			NS(1)|breast(3)|central_nervous_system(2)|cervix(4)|endometrium(10)|kidney(4)|large_intestine(14)|lung(47)|ovary(5)|pancreas(2)|prostate(6)|skin(2)|stomach(1)|upper_aerodigestive_tract(2)|urinary_tract(2)	105						GAGTTGCGCCGCTCAGCCACA	0.542000													5	223					0	0	1	0	0
NBPF10	100132406	broad.mit.edu	37	1	145367767	145367767	+	Missense_Mutation	SNP	G	G	A	rs77484671		TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chr1:145367767G>A	ENST00000342960.5	+	83	10398	c.10363G>A	c.(10363-10365)Gaa>Aaa	p.E3455K	NBPF10_ENST00000369338.1_Intron|NBPF10_ENST00000369339.2_Intron	NM_001039703.4	NP_001034792.4	A6NDV3	A6NDV3_HUMAN	neuroblastoma breakpoint family, member 10	3455								p.E3455K(5)		NS(3)|breast(1)|central_nervous_system(3)|endometrium(12)|kidney(23)|lung(15)|ovary(1)|prostate(7)|skin(6)|urinary_tract(2)	73	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		atcaaagaaggaaagaagaag	0.423000													8	108					0	0	1	0	0
PPT2-EGFL8	0	broad.mit.edu	37	6	32123649	32123649	+	Splice_Site	SNP	C	C	A			TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chr6:32123649C>A	ENST00000422437.1	+	5	626	c.433_splice	c.e5-1	p.D145_splice	PPT2_ENST00000493548.1_3'UTR|PPT2_ENST00000361568.2_Splice_Site_p.D151_splice|PPT2_ENST00000375137.2_Splice_Site_p.D145_splice|PPT2_ENST00000324816.6_Splice_Site_p.D145_splice|PPT2_ENST00000445576.2_Splice_Site_p.D145_splice|PPT2_ENST00000375143.2_Splice_Site_p.D145_splice|PPT2-EGFL8_ENST00000453656.2_3'UTR|PPT2_ENST00000437001.2_Splice_Site_p.D22_splice|PPT2_ENST00000395523.1_Splice_Site_p.D145_splice																							GCTTGCCAGACACGGACTACT	0.522000													12	70					4.36969e-10	4.753e-10	1	1	0
LFNG	3955	broad.mit.edu	37	7	2566511	2566511	+	Silent	SNP	C	C	G			TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chr7:2566511C>G	ENST00000222725.5	+	7	1049	c.1029C>G	c.(1027-1029)gcC>gcG	p.A343A	LFNG_ENST00000359574.3_Silent_p.A343A|LFNG_ENST00000338732.3_Silent_p.A214A|LFNG_ENST00000402045.1_Silent_p.A214A|LFNG_ENST00000402506.1_Silent_p.A272A	NM_001040167.1	NP_001035257.1	Q8NES3	LFNG_HUMAN	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	343					organ morphogenesis	extracellular region|integral to Golgi membrane	O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity			endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|lung(1)|ovary(1)|urinary_tract(2)	6		Ovarian(82;0.0112)		OV - Ovarian serous cystadenocarcinoma(56;2.54e-14)		AGCGGAACGCCGTCCACGTGA	0.677000													5	26					0	0	1	0	0
RPTN	126638	broad.mit.edu	37	1	152128186	152128186	+	Silent	SNP	A	A	G			TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chr1:152128186A>G	ENST00000316073.3	-	3	1453	c.1389T>C	c.(1387-1389)taT>taC	p.Y463Y		NM_001122965.1	NP_001116437.1	Q6XPR3	RPTN_HUMAN	repetin	463	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding			breast(2)|central_nervous_system(1)|endometrium(14)|kidney(2)|large_intestine(1)|lung(32)|prostate(1)|skin(4)|stomach(1)|upper_aerodigestive_tract(1)	59						CTGTCTGACCATAGTGGGAAC	0.512000													5	898					0	0	1	0	0
FPR3	2359	broad.mit.edu	37	19	52327505	52327505	+	Missense_Mutation	SNP	T	T	A			TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chr19:52327505T>A	ENST00000339223.4	+	2	683	c.504T>A	c.(502-504)agT>agA	p.S168R	FPR3_ENST00000595991.1_Missense_Mutation_p.S168R	NM_002030.3	NP_002021.3	P25089	FPR3_HUMAN	formyl peptide receptor 3	168					cellular component movement|chemotaxis	integral to membrane|plasma membrane	N-formyl peptide receptor activity			NS(1)|breast(3)|endometrium(3)|kidney(1)|large_intestine(5)|lung(17)|ovary(1)|prostate(1)|skin(3)	35						CTACAATAAGTACTACGAATG	0.453000													27	106					0	0	1	0	0
DVL1	1855	broad.mit.edu	37	1	1277187	1277187	+	Splice_Site	SNP	T	T	C			TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chr1:1277187T>C	ENST00000378888.5	-	5	751		c.e5-2		DVL1_ENST00000378891.5_Splice_Site			O14640	DVL1_HUMAN	dishevelled segment polarity protein 1						canonical Wnt receptor signaling pathway|dendrite morphogenesis|intracellular signal transduction|negative regulation of protein binding|negative regulation of protein kinase activity|neural tube development|neuromuscular junction development|neurotransmitter secretion|positive regulation of transcription, DNA-dependent|positive regulation of Wnt receptor signaling pathway|protein localization to nucleus|receptor clustering|transcription from RNA polymerase II promoter|Wnt receptor signaling pathway, planar cell polarity pathway	cytoplasmic membrane-bounded vesicle|cytosol|plasma membrane|synapse|synaptosome	frizzled binding|identical protein binding|protein kinase binding|signal transducer activity			endometrium(1)|kidney(1)|large_intestine(2)|lung(5)|ovary(1)|prostate(1)|upper_aerodigestive_tract(2)	13	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;2.83e-35)|OV - Ovarian serous cystadenocarcinoma(86;3.77e-21)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.0025)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.145)		TCCGGGCGGCTGTGGGGGCAG	0.687000													4	2					0	0	1	0	0
RMI1	80010	broad.mit.edu	37	9	86617189	86617189	+	Missense_Mutation	SNP	A	A	G			TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chr9:86617189A>G	ENST00000325875.3	+	3	1620	c.1288A>G	c.(1288-1290)Acc>Gcc	p.T430A		NM_024945.2	NP_079221.2	Q9H9A7	RMI1_HUMAN	RecQ mediated genome instability 1	430					DNA replication	nucleus				biliary_tract(1)|central_nervous_system(1)|kidney(2)|large_intestine(7)|lung(3)|ovary(1)|skin(1)|stomach(1)|upper_aerodigestive_tract(1)	18						AATAAAACAAACCAGCAGTTC	0.289000													10	54					0	0	1	0	0
ZNF844	284391	broad.mit.edu	37	19	12187394	12187394	+	Missense_Mutation	SNP	T	T	C			TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chr19:12187394T>C	ENST00000439326.3	+	4	1634	c.1459T>C	c.(1459-1461)Ttt>Ctt	p.F487L	ZNF844_ENST00000441304.2_3'UTR	NM_001136501.1	NP_001129973.1	Q08AG5	ZN844_HUMAN	zinc finger protein 844	487					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding	p.F487L(1)		NS(1)|breast(2)|central_nervous_system(1)|endometrium(2)|kidney(2)|lung(1)|prostate(1)	10						GCCTTCATTTTTTCCACTTCC	0.448000													3	59					0	0	1	0	0
PHC1	1911	broad.mit.edu	37	12	9086978	9086978	+	Missense_Mutation	SNP	G	G	T			TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chr12:9086978G>T	ENST00000433083.2	+	9	2167	c.2022G>T	c.(2020-2022)atG>atT	p.M674I	PHC1_ENST00000543824.1_Missense_Mutation_p.M719I|PHC1_ENST00000536844.1_Missense_Mutation_p.M325I|PHC1_ENST00000544916.1_Missense_Mutation_p.M719I			P78364	PHC1_HUMAN	polyhomeotic homolog 1 (Drosophila)	719					multicellular organismal development	PcG protein complex	DNA binding|zinc ion binding			breast(2)|cervix(1)|endometrium(5)|large_intestine(8)|liver(2)|lung(3)|ovary(2)|pancreas(1)|skin(2)|upper_aerodigestive_tract(1)	27						CTAGACAAATGGGTGACTCAA	0.517000													17	59					9.7654e-05	0.000100909	1	1	0
DDX11	1663	broad.mit.edu	37	12	31236844	31236844	+	Missense_Mutation	SNP	C	C	G			TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chr12:31236844C>G	ENST00000251758.5	+	3	493	c.242C>G	c.(241-243)aCt>aGt	p.T81S	DDX11_ENST00000228264.6_Missense_Mutation_p.T55S|DDX11_ENST00000545668.1_Missense_Mutation_p.T81S|DDX11_ENST00000407793.2_Missense_Mutation_p.T81S|DDX11_ENST00000542838.1_Missense_Mutation_p.T81S|DDX11_ENST00000350437.4_Missense_Mutation_p.T81S			Q96FC9	DDX11_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	81	Helicase ATP-binding.				G2/M transition of mitotic cell cycle|interspecies interaction between organisms|mitotic sister chromatid segregation|positive regulation of cell proliferation|S phase of mitotic cell cycle|sister chromatid cohesion	midbody|nuclear chromatin|nucleolus|spindle pole	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|RNA binding			breast(4)|central_nervous_system(1)|cervix(1)|endometrium(4)|kidney(11)|large_intestine(5)|lung(23)|prostate(3)|skin(2)|stomach(1)|upper_aerodigestive_tract(2)	57	all_cancers(9;1.77e-11)|all_lung(12;6.21e-11)|all_epithelial(9;6.49e-11)|Lung NSC(12;1.06e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Lung SC(12;0.0592)|Esophageal squamous(101;0.233)					GAAACTGGAACTGGCCCCTTA	0.547000										Multiple Myeloma(12;0.14)			12	77					0	0	1	0	0
PTPRC	5788	broad.mit.edu	37	1	198704261	198704261	+	Silent	SNP	G	G	A			TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chr1:198704261G>A	ENST00000367376.2	+	23	2448	c.2277G>A	c.(2275-2277)aaG>aaA	p.K759K	PTPRC_ENST00000352140.3_Silent_p.K711K|PTPRC_ENST00000442510.2_Silent_p.K761K|PTPRC_ENST00000594404.1_Silent_p.K598K|PTPRC_ENST00000348564.6_Silent_p.K600K	NM_002838.4	NP_002829.3	P08575	PTPRC_HUMAN	protein tyrosine phosphatase, receptor type, C	759	Tyrosine-protein phosphatase 1.				axon guidance|B cell proliferation|B cell receptor signaling pathway|defense response to virus|immunoglobulin biosynthetic process|negative regulation of cytokine-mediated signaling pathway|negative regulation of protein kinase activity|negative regulation of T cell mediated cytotoxicity|positive regulation of antigen receptor-mediated signaling pathway|positive regulation of B cell proliferation|positive regulation of protein kinase activity|positive regulation of T cell proliferation|regulation of S phase|release of sequestered calcium ion into cytosol|T cell differentiation|T cell receptor signaling pathway	focal adhesion|integral to plasma membrane|membrane raft	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			breast(7)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(6)|large_intestine(22)|lung(41)|ovary(4)|pancreas(2)|prostate(1)|skin(13)|stomach(1)|upper_aerodigestive_tract(5)|urinary_tract(3)	111						tGTAGAACAAGTGTGCAGAAT	0.318000													6	35					0	0	1	0	0
SPCS1	28972	broad.mit.edu	37	3	52741717	52741717	+	Silent	SNP	A	A	G			TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chr3:52741717A>G	ENST00000233025.7	+	4	809	c.399A>G	c.(397-399)ccA>ccG	p.P133P	SPCS1_ENST00000423431.1_Silent_p.P44P|SPCS1_ENST00000602728.1_Silent_p.P66P	NM_014041.3	NP_054760.3	Q9Y6A9	SPCS1_HUMAN	signal peptidase complex subunit 1 homolog (S. cerevisiae)	133					energy reserve metabolic process|regulation of insulin secretion|signal peptide processing	integral to endoplasmic reticulum membrane|microsome|signal peptidase complex	peptidase activity			kidney(2)|large_intestine(1)|lung(1)|ovary(1)|prostate(1)	6				BRCA - Breast invasive adenocarcinoma(193;6.51e-05)|Kidney(197;0.000583)|KIRC - Kidney renal clear cell carcinoma(197;0.000751)|OV - Ovarian serous cystadenocarcinoma(275;0.0469)		CACTTCCTCCATGGCCCATCT	0.413000													22	119					0	0	1	0	0
CNBD1	168975	broad.mit.edu	37	8	87951839	87951839	+	Silent	SNP	C	C	T			TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chr8:87951839C>T	ENST00000518476.1	+	4	339	c.288C>T	c.(286-288)ggC>ggT	p.G96G		NM_173538.2	NP_775809.1	Q8NA66	CNBD1_HUMAN	cyclic nucleotide binding domain containing 1	96										breast(1)|cervix(1)|endometrium(2)|kidney(1)|large_intestine(6)|lung(16)|ovary(4)|urinary_tract(1)	32						TCAATGAAGGCAAAGAGGAAA	0.338000													8	42					0	0	1	0	0
AC004381.6	0	broad.mit.edu	37	16	20824580	20824580	+	Missense_Mutation	SNP	G	G	T			TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chr16:20824580G>T	ENST00000261377.6	+	3	416	c.207G>T	c.(205-207)ttG>ttT	p.L69F	ERI2_ENST00000564349.1_Intron|AC004381.6_ENST00000348433.6_Missense_Mutation_p.L69F|AC004381.6_ENST00000567297.1_3'UTR|AC004381.6_ENST00000564274.1_Missense_Mutation_p.L69F	NM_001199053.1|NM_030941.2	NP_001185982.1|NP_112203.2																					TGTGTGAATTGCTGAAGTATG	0.398000													3	48					0.115264	0.115264	1	1	0
ULK4	54986	broad.mit.edu	37	3	41877429	41877429	+	Missense_Mutation	SNP	T	T	C			TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chr3:41877429T>C	ENST00000301831.4	-	18	2153	c.1691A>G	c.(1690-1692)aAc>aGc	p.N564S		NM_017886.2	NP_060356.2	Q96C45	ULK4_HUMAN	unc-51 like kinase 4	564				AIVLLTELIRENFRNSKLKQCLLPTLGE -> TTSSIGIGI LNCLVQHSTPVPRQCLVYV (in Ref. 3; AAH14794).			ATP binding|protein serine/threonine kinase activity			breast(2)|cervix(1)|large_intestine(6)|lung(7)|prostate(5)|skin(1)	22				KIRC - Kidney renal clear cell carcinoma(284;0.214)		GTTCCTGAAGTTTTCCCTAAT	0.358000													18	115					0	0	1	0	0
ILF2	3608	broad.mit.edu	37	1	153635689	153635689	+	Splice_Site	SNP	A	A	T			TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chr1:153635689A>T	ENST00000361891.4	-	11	932		c.e11+1		ILF2_ENST00000480213.1_5'UTR	NM_001267809.1|NM_004515.3	NP_001254738.1|NP_004506.2	Q12905	ILF2_HUMAN	interleukin enhancer binding factor 2						immune response|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus|ribonucleoprotein complex	ATP binding|DNA binding|double-stranded RNA binding|protein binding|transferase activity			cervix(1)|kidney(1)|lung(4)|skin(1)	7	all_lung(78;1.84e-32)|Lung NSC(65;6.67e-31)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.171)			AGCATGCTGTACCTGTATGCA	0.448000													31	189					0	0	1	0	0
ZNF157	7712	broad.mit.edu	37	X	47272589	47272589	+	Missense_Mutation	SNP	C	C	G			TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chrX:47272589C>G	ENST00000377073.3	+	4	1203	c.1117C>G	c.(1117-1119)Ctt>Gtt	p.L373V		NM_003446.3	NP_003437.2	P51786	ZN157_HUMAN	zinc finger protein 157	373					negative regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(1)|endometrium(2)|large_intestine(2)|lung(5)|upper_aerodigestive_tract(1)	11						GCACTCATCTCTTGGGATCCA	0.413000													12	29					0	0	1	0	0
IGKV2D-29	0	broad.mit.edu	37	2	89986989	89986989	+	RNA	SNP	C	C	T			TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chr2:89986989C>T	ENST00000491977.1	+	0	300																											TCAGTGGCAGCGGGTCAGGGA	0.517000													13	47					0	0	1	0	0
CHN1	1123	broad.mit.edu	37	2	175673684	175673684	+	Missense_Mutation	SNP	G	G	A			TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chr2:175673684G>A	ENST00000409900.3	-	11	1364	c.1051C>T	c.(1051-1053)Cca>Tca	p.P351S	CHN1_ENST00000409597.1_Missense_Mutation_p.P167S|CHN1_ENST00000409156.3_Missense_Mutation_p.P325S|CHN1_ENST00000295497.7_Missense_Mutation_p.P226S|CHN1_ENST00000488080.1_5'UTR	NM_001822.5	NP_001813.1	P15882	CHIN_HUMAN	chimerin 1	351	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|metal ion binding|SH3/SH2 adaptor activity	p.P351T(1)|p.P226T(1)		NS(1)|breast(1)|kidney(1)|large_intestine(3)|lung(7)|ovary(2)|prostate(1)|skin(1)|urinary_tract(1)	18			OV - Ovarian serous cystadenocarcinoma(117;0.226)			AGTGGAATTGGCAAATCCCTG	0.368000			T	TAF15	extraskeletal myxoid chondrosarcoma								4	113					0	0	1	0	0
FOXP2	93986	broad.mit.edu	37	7	114270000	114270000	+	Silent	SNP	G	G	A			TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chr7:114270000G>A	ENST00000393500.3	+	11	1132	c.312G>A	c.(310-312)caG>caA	p.Q104Q	FOXP2_ENST00000350908.4_Silent_p.Q179Q|FOXP2_ENST00000393498.2_Silent_p.Q159Q|FOXP2_ENST00000390668.3_Silent_p.Q203Q|FOXP2_ENST00000393491.3_Silent_p.Q87Q|FOXP2_ENST00000403559.4_Silent_p.Q196Q|FOXP2_ENST00000393494.2_Silent_p.Q179Q|FOXP2_ENST00000393489.3_Silent_p.Q87Q|FOXP2_ENST00000408937.3_Silent_p.Q204Q|FOXP2_ENST00000360232.4_Silent_p.Q179Q|AC020606.1_ENST00000580664.1_RNA|FOXP2_ENST00000378237.3_Silent_p.Q179Q			O15409	FOXP2_HUMAN	forkhead box P2	179	Gln-rich.				camera-type eye development|caudate nucleus development|cerebellum development|cerebral cortex development|embryo development|growth|lung alveolus development|negative regulation of transcription, DNA-dependent|pattern specification process|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of mesenchymal cell proliferation|post-embryonic development|putamen development|regulation of sequence-specific DNA binding transcription factor activity|righting reflex|skeletal muscle tissue development|smooth muscle tissue development|vocal learning	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding	p.Q204Q(1)		breast(3)|endometrium(7)|kidney(4)|large_intestine(7)|lung(22)|ovary(4)|pancreas(1)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(2)	52						agcaacaacagcagcagcagc	0.498000													3	45					0	0	1	0	0
ABCA17P	0	broad.mit.edu	37	16	2475097	2475098	+	RNA	DEL	TC	TC	-			TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chr16:2475097_2475098delTC	ENST00000469908.1	+	0	3047					NR_003574.1																						GGTAActctgtctctctctctc	0.559													2	4	---	---	---	---					
LDHD	197257	broad.mit.edu	37	16	75148567	75148567	+	Frame_Shift_Del	DEL	G	G	-			TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chr16:75148567delG	ENST00000300051.4	-	5	532	c.486delC	c.(484-486)gcfs	p.A162fs	LDHD_ENST00000450168.2_Frame_Shift_Del_p.A162fs	NM_153486.3	NP_705690.2	Q86WU2	LDHD_HUMAN	lactate dehydrogenase D	162	FAD-binding PCMH-type.						D-lactate dehydrogenase (cytochrome) activity|flavin adenine dinucleotide binding|protein binding			endometrium(1)|large_intestine(2)|lung(12)|upper_aerodigestive_tract(1)	16						CACAGAGAGAGGCGTCCGCGC	0.706													2	4	---	---	---	---					
MMP11	4320	broad.mit.edu	37	22	24123200	24123200	+	Frame_Shift_Del	DEL	T	T	-			TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chr22:24123200delT	ENST00000215743.3	+	5	823	c.771delT	c.(769-771)tafs	p.Y257fs		NM_005940.3	NP_005931.2	P24347	MMP11_HUMAN	matrix metallopeptidase 11 (stromelysin 3)	257					collagen catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			central_nervous_system(1)|endometrium(2)|kidney(1)|large_intestine(7)|liver(2)|lung(5)|prostate(1)|skin(7)|upper_aerodigestive_tract(1)	27		Medulloblastoma(6;9.86e-08)|all_neural(6;0.000318)				AACACCTATATGGCCAGCCCT	0.622													12	45	---	---	---	---					
GAS2L1	10634	broad.mit.edu	37	22	29707498	29707498	+	Frame_Shift_Del	DEL	G	G	-			TCGA-ZG-A9LN-01A-11D-A41K-08	TCGA-ZG-A9LN-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd8c6e47-fb57-4114-ab7a-9c49e5ff0613	668c30db-01b0-478c-8a8a-864043eb6519	g.chr22:29707498delG	ENST00000471961.1	+	5	2105	c.1057delG	c.(1057-1059)ggfs	p.G353fs	GAS2L1_ENST00000341313.6_3'UTR|GAS2L1_ENST00000360113.2_Frame_Shift_Del_p.P295fs|GAS2L1_ENST00000406549.3_Intron|GAS2L1_ENST00000403764.1_Frame_Shift_Del_p.G353fs|GAS2L1_ENST00000407647.2_Frame_Shift_Del_p.G353fs|GAS2L1_ENST00000407854.1_Frame_Shift_Del_p.G353fs			Q99501	GA2L1_HUMAN	growth arrest-specific 2 like 1	353					cell cycle arrest	cytoplasm|cytoskeleton				endometrium(2)|lung(2)|prostate(1)	5						CCGCTACTCCGGGGACAGTGA	0.706													2	4	---	---	---	---					
