Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
SHROOM3	0	genome.wustl.edu	37	4	77357347	77357347	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9I3-01A-11D-A38Z-09	TCGA-3B-A9I3-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f6e1ec5e-069a-468e-86f6-24657fdeff5a	1fdd19d3-2a91-411e-b3aa-e425aa45b4ce	4	77357347	77357347	C	T	SNP	SHROOM3	ENST00000296043	human	ensembl	74_37	+1	known	missense	c.142	p.H48Y	0.982	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM3	HGNC	ENSG00000138771	tier1	-	-	32	0	0.00	80	12	12.90	55	1	1.79	160	29	15.34
FAT1	0	genome.wustl.edu	37	4	187630313	187630313	+	Silent	SNP	G	G	T			TCGA-3B-A9I3-01A-11D-A38Z-09	TCGA-3B-A9I3-10A-01D-A38Z-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f6e1ec5e-069a-468e-86f6-24657fdeff5a	1fdd19d3-2a91-411e-b3aa-e425aa45b4ce	4	187630313	187630313	G	T	SNP	FAT1	ENST00000441802	human	ensembl	74_37	-1	known	silent	c.669	p.L223	0.045	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857	tier1	-	-	11	0	0.00	30	11	26.83	59	0	0.00	70	19	21.35
TNXB	0	genome.wustl.edu	37	6	32014049	32014049	+	Silent	SNP	G	G	T			TCGA-3B-A9I3-01A-11D-A38Z-09	TCGA-3B-A9I3-10A-01D-A38Z-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f6e1ec5e-069a-468e-86f6-24657fdeff5a	1fdd19d3-2a91-411e-b3aa-e425aa45b4ce	6	32014049	32014049	G	T	SNP	TNXB	ENST00000375247	human	ensembl	74_37	-1	known	silent	c.10503	p.T3501	0.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477	tier1	-	-	121	0	0.00	44	38	46.34	42	0	0.00	22	6	21.43
WDFY4	0	genome.wustl.edu	37	10	49951578	49951578	+	Missense_Mutation	SNP	C	C	G			TCGA-3B-A9I3-01A-11D-A38Z-09	TCGA-3B-A9I3-10A-01D-A38Z-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f6e1ec5e-069a-468e-86f6-24657fdeff5a	1fdd19d3-2a91-411e-b3aa-e425aa45b4ce	10	49951578	49951578	C	G	SNP	WDFY4	ENST00000325239	human	ensembl	74_37	+1	known	missense	c.2444	p.P815R	1.000	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY4	HGNC	ENSG00000128815	tier1	-	-	18	0	0.00	10	4	28.57	88	0	0.00	89	23	20.54
ENSG00000268032	0	genome.wustl.edu	37	19	18142862	18142862	+	R	SNP	A	A	C			TCGA-3B-A9I3-01A-11D-A38Z-09	TCGA-3B-A9I3-10A-01D-A38Z-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f6e1ec5e-069a-468e-86f6-24657fdeff5a	1fdd19d3-2a91-411e-b3aa-e425aa45b4ce	19	18142862	18142862	A	C	SNP	ENSG00000268032	ENST00000594957	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.062	-	-	-	no_errors	CTB-52I2.4	Clone_based_vega_gene	ENSG00000268032	tier1	-	-	86	0	0.00	111	33	22.92	45	0	0.00	39	10	20.41
PCDHA7	0	genome.wustl.edu	37	5	140214396	140214396	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9I3-01A-11D-A38Z-09	TCGA-3B-A9I3-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f6e1ec5e-069a-468e-86f6-24657fdeff5a	1fdd19d3-2a91-411e-b3aa-e425aa45b4ce	5	140214396	140214396	C	T	SNP	PCDHA7	ENST00000525929	human	ensembl	74_37	+1	known	missense	c.428	p.A143V	0.002	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA7	HGNC	ENSG00000204963	tier1	-	-	162	0	0.00	92	19	17.12	134	0	0.00	72	17	19.10
ANKRD36BP2	0	genome.wustl.edu	37	2	89084354	89084354	+	R	SNP	G	G	A			TCGA-3B-A9I3-01A-11D-A38Z-09	TCGA-3B-A9I3-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f6e1ec5e-069a-468e-86f6-24657fdeff5a	1fdd19d3-2a91-411e-b3aa-e425aa45b4ce	2	89084354	89084354	G	A	SNP	ANKRD36BP2	ENST00000393515	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.017	-	-	-	no_errors	ANKRD36BP2	HGNC	ENSG00000230006	tier1	-	-	26	0	0.00	96	30	23.81	7	0	0.00	38	7	15.56
DNM3	0	genome.wustl.edu	37	1	172356396	172356396	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9I3-01A-11D-A38Z-09	TCGA-3B-A9I3-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f6e1ec5e-069a-468e-86f6-24657fdeff5a	1fdd19d3-2a91-411e-b3aa-e425aa45b4ce	1	172356396	172356396	G	A	SNP	DNM3	ENST00000358155	human	ensembl	74_37	+1	known	missense	c.2182	p.A728T	0.996	pfam_GED,smart_GED	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,pfam_Pleckstrin_homology,superfamily_P-loop_NTPase,smart_Dynamin_GTPase,smart_Pleckstrin_homology,smart_GED,pfscan_Pleckstrin_homology,prints_Dynamin_SF	-	no_errors	DNM3	HGNC	ENSG00000197959	tier1	-	-	44	0	0.00	38	13	25.49	31	0	0.00	51	8	13.56
NPVF	0	genome.wustl.edu	37	7	25267967	25267967	+	Missense_Mutation	SNP	A	A	C			TCGA-3B-A9I3-01A-11D-A38Z-09	TCGA-3B-A9I3-10A-01D-A38Z-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f6e1ec5e-069a-468e-86f6-24657fdeff5a	1fdd19d3-2a91-411e-b3aa-e425aa45b4ce	7	25267967	25267967	A	C	SNP	NPVF	ENST00000222674	human	ensembl	74_37	-1	known	missense	c.92	p.V31G	0.023	NULL	NULL	-	no_errors	NPVF	HGNC	ENSG00000105954	tier1	-	-	26	0	0.00	135	50	26.88	13	0	0.00	90	14	13.46
NELFB	0	genome.wustl.edu	37	9	140150876	140150876	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9I3-01A-11D-A38Z-09	TCGA-3B-A9I3-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f6e1ec5e-069a-468e-86f6-24657fdeff5a	1fdd19d3-2a91-411e-b3aa-e425aa45b4ce	9	140150876	140150876	C	T	SNP	NELFB	ENST00000343053	human	ensembl	74_37	+1	known	missense	c.362	p.P121L	1.000	pfam_COBRA1	pfam_COBRA1	-	no_errors	NELFB	HGNC	ENSG00000188986	tier1	-	-	23	0	0.00	25	6	19.35	79	0	0.00	43	17	28.33
TP53BP1	0	genome.wustl.edu	37	15	43749174	43749174	+	Missense_Mutation	SNP	A	A	T			TCGA-3B-A9I3-01A-11D-A38Z-09	TCGA-3B-A9I3-10A-01D-A38Z-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f6e1ec5e-069a-468e-86f6-24657fdeff5a	1fdd19d3-2a91-411e-b3aa-e425aa45b4ce	15	43749174	43749174	A	T	SNP	TP53BP1	ENST00000382044	human	ensembl	74_37	-1	known	missense	c.1632	p.D544E	0.971	NULL	pfam_53-BP1_Tudor,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TP53BP1	HGNC	ENSG00000067369	tier1	-	-	34	0	0.00	91	10	9.90	48	0	0.00	110	16	12.70
LHX8	0	genome.wustl.edu	37	1	75608895	75608895	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9I3-01A-11D-A38Z-09	TCGA-3B-A9I3-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f6e1ec5e-069a-468e-86f6-24657fdeff5a	1fdd19d3-2a91-411e-b3aa-e425aa45b4ce	1	75608895	75608895	G	A	SNP	LHX8	ENST00000294638	human	ensembl	74_37	+1	known	missense	c.482	p.C161Y	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LHX8	HGNC	ENSG00000162624	tier1	-	-	17	0	0.00	55	9	14.06	21	0	0.00	61	7	10.00
MRPS5	0	genome.wustl.edu	37	2	95753147	95753147	+	Silent	SNP	T	T	A			TCGA-3B-A9I3-01A-11D-A38Z-09	TCGA-3B-A9I3-10A-01D-A38Z-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f6e1ec5e-069a-468e-86f6-24657fdeff5a	1fdd19d3-2a91-411e-b3aa-e425aa45b4ce	2	95753147	95753147	T	A	SNP	MRPS5	ENST00000272418	human	ensembl	74_37	-1	known	silent	c.1248	p.G416	0.009	NULL	pfam_Ribosomal_S5_C,pfam_Ribosomal_S5_N,superfamily_Ribosomal_S5_D2-typ_fold,pfscan_Ribosomal_S5_N	-	no_errors	MRPS5	HGNC	ENSG00000144029	tier1	-	-	42	0	0.00	43	14	24.56	52	0	0.00	102	23	18.40
FAM110B	0	genome.wustl.edu	37	8	59058842	59058842	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9I3-01A-11D-A38Z-09	TCGA-3B-A9I3-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f6e1ec5e-069a-468e-86f6-24657fdeff5a	1fdd19d3-2a91-411e-b3aa-e425aa45b4ce	8	59058842	59058842	C	T	SNP	FAM110B	ENST00000361488	human	ensembl	74_37	+1	known	missense	c.53	p.A18V	0.999	NULL	NULL	-	no_errors	FAM110B	HGNC	ENSG00000169122	tier1	rs140524173	-	161	0	0.00	67	19	22.09	36	0	0.00	25	4	13.79
CRISPLD1	0	genome.wustl.edu	37	8	75929118	75929118	+	Missense_Mutation	SNP	C	C	G			TCGA-3B-A9I3-01A-11D-A38Z-09	TCGA-3B-A9I3-10A-01D-A38Z-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f6e1ec5e-069a-468e-86f6-24657fdeff5a	1fdd19d3-2a91-411e-b3aa-e425aa45b4ce	8	75929118	75929118	C	G	SNP	CRISPLD1	ENST00000262207	human	ensembl	74_37	+1	known	missense	c.871	p.Q291E	1.000	superfamily_LCCL,smart_LCCL,pfscan_LCCL	pfam_LCCL,pfam_CAP_domain,superfamily_CAP_domain,superfamily_LCCL,smart_Allrgn_V5/Tpx1,smart_LCCL,pfscan_LCCL,prints_Allrgn_V5/Tpx1	-	no_errors	CRISPLD1	HGNC	ENSG00000121005	tier1	-	-	16	0	0.00	79	17	17.71	25	0	0.00	62	13	17.11
PPIP5K2	0	genome.wustl.edu	37	5	102486984	102486984	+	Silent	SNP	C	C	A			TCGA-3B-A9I3-01A-11D-A38Z-09	TCGA-3B-A9I3-10A-01D-A38Z-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f6e1ec5e-069a-468e-86f6-24657fdeff5a	1fdd19d3-2a91-411e-b3aa-e425aa45b4ce	5	102486984	102486984	C	A	SNP	PPIP5K2	ENST00000358359	human	ensembl	74_37	+1	known	silent	c.934	p.R312	1.000	NULL	pfam_His_Pase_superF_clade-2	-	no_errors	PPIP5K2	HGNC	ENSG00000145725	tier1	-	-	125	0	0.00	280	70	20.00	34	0	0.00	90	22	19.64
TTN	0	genome.wustl.edu	37	2	179569022	179569022	+	Silent	SNP	G	G	T			TCGA-3B-A9I3-01A-11D-A38Z-09	TCGA-3B-A9I3-10A-01D-A38Z-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f6e1ec5e-069a-468e-86f6-24657fdeff5a	1fdd19d3-2a91-411e-b3aa-e425aa45b4ce	2	179569022	179569022	G	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.26343	p.G8781	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657	tier1	-	-	16	0	0.00	55	8	12.70	33	0	0.00	57	9	13.64
LRP1B	0	genome.wustl.edu	37	2	141641542	141641542	+	Missense_Mutation	SNP	T	T	C			TCGA-3B-A9I3-01A-11D-A38Z-09	TCGA-3B-A9I3-10A-01D-A38Z-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f6e1ec5e-069a-468e-86f6-24657fdeff5a	1fdd19d3-2a91-411e-b3aa-e425aa45b4ce	2	141641542	141641542	T	C	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.4013	p.E1338G	1.000	smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702	tier1	-	-	18	0	0.00	42	11	20.75	10	0	0.00	80	12	12.90
TAB1	0	genome.wustl.edu	37	22	39811644	39811644	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9I3-01A-11D-A38Z-09	TCGA-3B-A9I3-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f6e1ec5e-069a-468e-86f6-24657fdeff5a	1fdd19d3-2a91-411e-b3aa-e425aa45b4ce	22	39811644	39811644	C	T	SNP	TAB1	ENST00000216160	human	ensembl	74_37	+1	known	missense	c.310	p.R104C	0.849	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	-	no_errors	TAB1	HGNC	ENSG00000100324	tier1	-	-	133	0	0.00	27	8	22.86	21	0	0.00	20	7	25.93
WNT10B	0	genome.wustl.edu	37	12	49360194	49360194	+	Missense_Mutation	SNP	A	A	T			TCGA-3B-A9I3-01A-11D-A38Z-09	TCGA-3B-A9I3-10A-01D-A38Z-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f6e1ec5e-069a-468e-86f6-24657fdeff5a	1fdd19d3-2a91-411e-b3aa-e425aa45b4ce	12	49360194	49360194	A	T	SNP	WNT10B	ENST00000301061	human	ensembl	74_37	-1	known	missense	c.854	p.I285N	0.991	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt10	-	no_errors	WNT10B	HGNC	ENSG00000169884	tier1	-	-	349	1	0.29	153	24	13.56	76	0	0.00	40	11	21.57
VANGL1	0	genome.wustl.edu	37	1	116206547	116206547	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9I3-01A-11D-A38Z-09	TCGA-3B-A9I3-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f6e1ec5e-069a-468e-86f6-24657fdeff5a	1fdd19d3-2a91-411e-b3aa-e425aa45b4ce	1	116206547	116206547	C	T	SNP	VANGL1	ENST00000310260	human	ensembl	74_37	+1	known	missense	c.470	p.A157V	0.987	pfam_Strabismus,pirsf_Strabismus	pfam_Strabismus,pirsf_Strabismus	-	no_errors	VANGL1	HGNC	ENSG00000173218	tier1	-	-	94	0	0.00	95	21	18.10	65	0	0.00	122	26	17.57
MOSPD2	0	genome.wustl.edu	37	X	14933790	14933790	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9I3-01A-11D-A38Z-09	TCGA-3B-A9I3-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f6e1ec5e-069a-468e-86f6-24657fdeff5a	1fdd19d3-2a91-411e-b3aa-e425aa45b4ce	X	14933790	14933790	G	A	SNP	MOSPD2	ENST00000380492	human	ensembl	74_37	+1	known	missense	c.1090	p.V364M	1.000	pfam_MSP_dom,superfamily_PapD-like,pfscan_MSP_dom	pfam_CRAL-TRIO_dom,pfam_MSP_dom,superfamily_CRAL-TRIO_dom,superfamily_PapD-like,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_MSP_dom	-	no_errors	MOSPD2	HGNC	ENSG00000130150	tier1	-	-	19	0	0.00	37	33	47.14	16	0	0.00	34	16	32.00
KANSL1L	0	genome.wustl.edu	37	2	210892036	210892036	+	Missense_Mutation	SNP	T	T	C			TCGA-3B-A9I3-01A-11D-A38Z-09	TCGA-3B-A9I3-10A-01D-A38Z-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f6e1ec5e-069a-468e-86f6-24657fdeff5a	1fdd19d3-2a91-411e-b3aa-e425aa45b4ce	2	210892036	210892036	T	C	SNP	KANSL1L	ENST00000281772	human	ensembl	74_37	-1	known	missense	c.2435	p.N812S	0.002	NULL	NULL	-	no_errors	KANSL1L	HGNC	ENSG00000144445	tier1	-	-	48	0	0.00	85	13	13.27	82	0	0.00	108	26	19.40
RB1	0	genome.wustl.edu	37	13	49050980	49050980	+	Splice_Site	SNP	G	G	A			TCGA-3B-A9I3-01A-11D-A38Z-09	TCGA-3B-A9I3-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f6e1ec5e-069a-468e-86f6-24657fdeff5a	1fdd19d3-2a91-411e-b3aa-e425aa45b4ce	13	49050980	49050980	G	A	SNP	RB1	ENST00000267163	human	ensembl	74_37	+1	known	splice_site	c.2663+1	e25+1	1.000	-	-	-	no_errors	RB1	HGNC	ENSG00000139687	tier1	-	-	32	0	0.00	87	21	19.44	19	0	0.00	78	26	25.00
ANKRD36BP2	0	genome.wustl.edu	37	2	89084352	89084352	+	R	SNP	T	T	A			TCGA-3B-A9I3-01A-11D-A38Z-09	TCGA-3B-A9I3-10A-01D-A38Z-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f6e1ec5e-069a-468e-86f6-24657fdeff5a	1fdd19d3-2a91-411e-b3aa-e425aa45b4ce	2	89084352	89084352	T	A	SNP	ANKRD36BP2	ENST00000393515	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.014	-	-	-	no_errors	ANKRD36BP2	HGNC	ENSG00000230006	tier1	-	-	26	0	0.00	101	30	22.90	7	0	0.00	38	7	15.56
CTSK	0	genome.wustl.edu	37	1	150772185	150772185	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9I3-01A-11D-A38Z-09	TCGA-3B-A9I3-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f6e1ec5e-069a-468e-86f6-24657fdeff5a	1fdd19d3-2a91-411e-b3aa-e425aa45b4ce	1	150772185	150772185	C	T	SNP	CTSK	ENST00000271651	human	ensembl	74_37	-1	known	missense	c.619	p.E207K	1.000	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C	pfam_Peptidase_C1A_C,pfam_Prot_inhib_I29,pfam_Peptidase_C1B,smart_Prot_inhib_I29,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSK	HGNC	ENSG00000143387	tier1	-	-	34	0	0.00	56	14	20.00	43	0	0.00	70	16	18.60
RASA3	0	genome.wustl.edu	37	13	114773080	114773080	+	Missense_Mutation	SNP	G	G	C			TCGA-3B-A9I3-01A-11D-A38Z-09	TCGA-3B-A9I3-10A-01D-A38Z-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f6e1ec5e-069a-468e-86f6-24657fdeff5a	1fdd19d3-2a91-411e-b3aa-e425aa45b4ce	13	114773080	114773080	G	C	SNP	RASA3	ENST00000334062	human	ensembl	74_37	-1	known	missense	c.1671	p.F557L	0.997	superfamily_Rho_GTPase_activation_prot,smart_RasGAP	pfam_RasGAP,pfam_C2_dom,pfam_Znf_Btk_motif,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_C2_dom,smart_RasGAP,smart_Pleckstrin_homology,smart_Znf_Btk_motif,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_Znf_Btk_motif,pfscan_RasGAP,prints_Znf_Btk_motif	-	no_errors	RASA3	HGNC	ENSG00000185989	tier1	-	-	82	0	0.00	29	9	23.68	119	0	0.00	56	15	21.13
ABCG1	0	genome.wustl.edu	37	21	43711222	43711222	+	Missense_Mutation	SNP	T	T	A			TCGA-3B-A9I3-01A-11D-A38Z-09	TCGA-3B-A9I3-10A-01D-A38Z-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f6e1ec5e-069a-468e-86f6-24657fdeff5a	1fdd19d3-2a91-411e-b3aa-e425aa45b4ce	21	43711222	43711222	T	A	SNP	ABCG1	ENST00000398437	human	ensembl	74_37	+1	known	missense	c.1888	p.F630I	0.997	pfam_ABC_2_trans,tigrfam_Pigment_permease	pfam_ABC_2_trans,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Pigment_permease	-	no_errors	ABCG1	HGNC	ENSG00000160179	tier1	-	-	74	0	0.00	58	13	18.31	97	0	0.00	84	17	16.83
ABCC1	0	genome.wustl.edu	37	16	16205244	16205244	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9I3-01A-11D-A38Z-09	TCGA-3B-A9I3-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f6e1ec5e-069a-468e-86f6-24657fdeff5a	1fdd19d3-2a91-411e-b3aa-e425aa45b4ce	16	16205244	16205244	G	A	SNP	ABCC1	ENST00000399408	human	ensembl	74_37	+1	known	missense	c.2914	p.V972M	0.997	superfamily_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC1	HGNC	ENSG00000103222	tier1	-	-	48	0	0.00	48	6	11.11	76	0	0.00	85	22	20.56
FREM2	0	genome.wustl.edu	37	13	39265091	39265091	+	Missense_Mutation	SNP	A	A	C			TCGA-3B-A9I3-01A-11D-A38Z-09	TCGA-3B-A9I3-10A-01D-A38Z-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f6e1ec5e-069a-468e-86f6-24657fdeff5a	1fdd19d3-2a91-411e-b3aa-e425aa45b4ce	13	39265091	39265091	A	C	SNP	FREM2	ENST00000280481	human	ensembl	74_37	+1	known	missense	c.3610	p.M1204L	1.000	superfamily_Cadherin-like	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893	tier1	-	-	19	0	0.00	33	18	35.29	34	0	0.00	61	15	19.74
RAD21L1	0	genome.wustl.edu	37	20	1212265	1212265	+	Splice_Site	SNP	T	T	A			TCGA-3B-A9I3-01A-11D-A38Z-09	TCGA-3B-A9I3-10A-01D-A38Z-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f6e1ec5e-069a-468e-86f6-24657fdeff5a	1fdd19d3-2a91-411e-b3aa-e425aa45b4ce	20	1212265	1212265	T	A	SNP	RAD21L1	ENST00000409241	human	ensembl	74_37	+1	known	splice_site	c.368+2	e3+2	1.000	-	-	-	no_errors	RAD21L1	HGNC	ENSG00000244588	tier1	-	-	8	0	0.00	30	6	16.67	10	0	0.00	29	5	14.71
LOXHD1	0	genome.wustl.edu	37	18	44173692	44173692	+	Silent	SNP	G	G	A			TCGA-3B-A9I3-01A-11D-A38Z-09	TCGA-3B-A9I3-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f6e1ec5e-069a-468e-86f6-24657fdeff5a	1fdd19d3-2a91-411e-b3aa-e425aa45b4ce	18	44173692	44173692	G	A	SNP	LOXHD1	ENST00000536736	human	ensembl	74_37	-1	known	silent	c.1302	p.T434	0.452	pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom	pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom	-	no_errors	LOXHD1	HGNC	ENSG00000167210	tier1	-	-	15	0	0.00	74	16	17.58	35	0	0.00	83	24	22.43
PKNOX2	0	genome.wustl.edu	37	11	125221274	125221274	+	Missense_Mutation	SNP	C	C	A			TCGA-3B-A9I3-01A-11D-A38Z-09	TCGA-3B-A9I3-10A-01D-A38Z-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f6e1ec5e-069a-468e-86f6-24657fdeff5a	1fdd19d3-2a91-411e-b3aa-e425aa45b4ce	11	125221274	125221274	C	A	SNP	PKNOX2	ENST00000298282	human	ensembl	74_37	+1	known	missense	c.73	p.Q25K	1.000	NULL	pfam_Homeobox_dom,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	PKNOX2	HGNC	ENSG00000165495	tier1	-	-	31	0	0.00	13	5	27.78	29	0	0.00	14	4	22.22
TP53	0	genome.wustl.edu	37	17	7578406	7578406	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9I3-01A-11D-A38Z-09	TCGA-3B-A9I3-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f6e1ec5e-069a-468e-86f6-24657fdeff5a	1fdd19d3-2a91-411e-b3aa-e425aa45b4ce	17	7578406	7578406	C	T	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.524	p.R175H	1.000	pfam_p53_D-bd,superfamily_p53-like_TF_D-bd,prints_p53_tumour_suppressor	pfam_p53_D-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_D-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	rs28934578	-	63	0	0.00	19	7	26.92	73	0	0.00	34	17	33.33
CDHR1	0	genome.wustl.edu	37	10	85978986	85978986	+	Missense_Mutation	SNP	T	T	A			TCGA-3B-A9I3-01A-11D-A38Z-09	TCGA-3B-A9I3-10A-01D-A38Z-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f6e1ec5e-069a-468e-86f6-24657fdeff5a	1fdd19d3-2a91-411e-b3aa-e425aa45b4ce	10	85978986	85978986	T	A	SNP	CDHR1	ENST00000332904	human	ensembl	74_37	+1	known	missense	c.2192	p.V731E	0.001	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDHR1	HGNC	ENSG00000148600	tier1	-	-	67	0	0.00	75	22	22.68	63	0	0.00	113	33	22.60
ARHGEF11	0	genome.wustl.edu	37	1	156909248	156909248	+	R	SNP	G	G	A			TCGA-3B-A9I3-01A-11D-A38Z-09	TCGA-3B-A9I3-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f6e1ec5e-069a-468e-86f6-24657fdeff5a	1fdd19d3-2a91-411e-b3aa-e425aa45b4ce	1	156909248	156909248	G	A	SNP	ARHGEF11	ENST00000487682	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ARHGEF11	HGNC	ENSG00000132694	tier1	-	-	28	0	0.00	29	11	27.50	94	0	0.00	136	38	21.84
TICAM1	0	genome.wustl.edu	37	19	4816340	4816340	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9I3-01A-11D-A38Z-09	TCGA-3B-A9I3-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f6e1ec5e-069a-468e-86f6-24657fdeff5a	1fdd19d3-2a91-411e-b3aa-e425aa45b4ce	19	4816340	4816340	C	T	SNP	TICAM1	ENST00000248244	human	ensembl	74_37	-1	known	missense	c.2050	p.A684T	0.704	pirsf_TICAM1	superfamily_TIR_dom,pirsf_TICAM1	-	no_errors	TICAM1	HGNC	ENSG00000127666	tier1	-	-	64	0	0.00	58	10	14.71	93	0	0.00	54	21	28.00
EHBP1	0	genome.wustl.edu	37	2	63220800	63220800	+	Missense_Mutation	SNP	C	C	G			TCGA-3B-A9I3-01A-11D-A38Z-09	TCGA-3B-A9I3-10A-01D-A38Z-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f6e1ec5e-069a-468e-86f6-24657fdeff5a	1fdd19d3-2a91-411e-b3aa-e425aa45b4ce	2	63220800	63220800	C	G	SNP	EHBP1	ENST00000263991	human	ensembl	74_37	+1	known	missense	c.3082	p.P1028A	1.000	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	EHBP1	HGNC	ENSG00000115504	tier1	-	-	14	0	0.00	35	14	28.57	15	0	0.00	84	21	20.00
RASSF6	0	genome.wustl.edu	37	4	74481640	74481640	+	Missense_Mutation	SNP	A	A	G			TCGA-3B-A9I3-01A-11D-A38Z-09	TCGA-3B-A9I3-10A-01D-A38Z-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f6e1ec5e-069a-468e-86f6-24657fdeff5a	1fdd19d3-2a91-411e-b3aa-e425aa45b4ce	4	74481640	74481640	A	G	SNP	RASSF6	ENST00000335049	human	ensembl	74_37	-1	known	missense	c.76	p.S26P	0.001	NULL	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SARAH_dom	-	no_errors	RASSF6	HGNC	ENSG00000169435	tier1	-	-	36	0	0.00	78	29	27.10	29	0	0.00	130	18	12.00
S100A7	0	genome.wustl.edu	37	1	153430303	153430303	+	Silent	SNP	G	G	A			TCGA-3B-A9I3-01A-11D-A38Z-09	TCGA-3B-A9I3-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f6e1ec5e-069a-468e-86f6-24657fdeff5a	1fdd19d3-2a91-411e-b3aa-e425aa45b4ce	1	153430303	153430303	G	A	SNP	S100A7	ENST00000368722	human	ensembl	74_37	-1	known	silent	c.285	p.P95	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	S100A7	HGNC	ENSG00000143556	tier1	-	-	43	0	0.00	49	6	10.71	9	0	0.00	20	9	31.03
ZC3H3	0	genome.wustl.edu	37	8	144621417	144621417	+	Silent	SNP	C	C	T			TCGA-3B-A9I3-01A-11D-A38Z-09	TCGA-3B-A9I3-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f6e1ec5e-069a-468e-86f6-24657fdeff5a	1fdd19d3-2a91-411e-b3aa-e425aa45b4ce	8	144621417	144621417	C	T	SNP	ZC3H3	ENST00000262577	human	ensembl	74_37	-1	known	silent	c.120	p.Q40	0.994	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H3	HGNC	ENSG00000014164	tier1	-	-	80	0	0.00	45	18	28.57	75	0	0.00	67	10	12.99
KIF1B	0	genome.wustl.edu	37	1	10423402	10423402	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9I3-01A-11D-A38Z-09	TCGA-3B-A9I3-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f6e1ec5e-069a-468e-86f6-24657fdeff5a	1fdd19d3-2a91-411e-b3aa-e425aa45b4ce	1	10423402	10423402	G	A	SNP	KIF1B	ENST00000263934	human	ensembl	74_37	+1	known	missense	c.4228	p.G1410S	1.000	NULL	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_Pleckstrin_homology,pfam_KIF1B,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,smart_Pleckstrin_homology,pfscan_FHA_dom,pfscan_Pleckstrin_homology,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1B	HGNC	ENSG00000054523	tier1	-	-	61	0	0.00	82	17	17.17	63	0	0.00	114	27	19.15
REG1P	0	genome.wustl.edu	37	2	79364441	79364441	+	R	SNP	T	T	C			TCGA-3B-A9I3-01A-11D-A38Z-09	TCGA-3B-A9I3-10A-01D-A38Z-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f6e1ec5e-069a-468e-86f6-24657fdeff5a	1fdd19d3-2a91-411e-b3aa-e425aa45b4ce	2	79364441	79364441	T	C	SNP	REG1P	ENST00000377435	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	REG1P	HGNC	ENSG00000204787	tier1	-	-	35	0	0.00	57	18	24.00	31	0	0.00	69	22	24.18
CCDC127	0	genome.wustl.edu	37	5	216901	216901	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9I3-01A-11D-A38Z-09	TCGA-3B-A9I3-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f6e1ec5e-069a-468e-86f6-24657fdeff5a	1fdd19d3-2a91-411e-b3aa-e425aa45b4ce	5	216901	216901	C	T	SNP	CCDC127	ENST00000296824	human	ensembl	74_37	-1	known	missense	c.64	p.D22N	1.000	NULL	NULL	-	no_errors	CCDC127	HGNC	ENSG00000164366	tier1	-	-	107	0	0.00	82	18	18.00	72	0	0.00	55	16	22.54
PCDH15	0	genome.wustl.edu	37	10	55568823	55568823	+	Missense_Mutation	SNP	T	T	C			TCGA-3B-A9I3-01A-11D-A38Z-09	TCGA-3B-A9I3-10A-01D-A38Z-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f6e1ec5e-069a-468e-86f6-24657fdeff5a	1fdd19d3-2a91-411e-b3aa-e425aa45b4ce	10	55568823	55568823	T	C	SNP	PCDH15	ENST00000395445	human	ensembl	74_37	-1	novel	missense	c.4987	p.R1663G	0.701	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275	tier1	-	-	10	0	0.00	23	5	17.24	43	0	0.00	99	40	28.78
UNKL	0	genome.wustl.edu	37	16	1444442	1444442	+	Nonsense_Mutation	SNP	C	C	A			TCGA-3B-A9I3-01A-11D-A38Z-09	TCGA-3B-A9I3-10A-01D-A38Z-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f6e1ec5e-069a-468e-86f6-24657fdeff5a	1fdd19d3-2a91-411e-b3aa-e425aa45b4ce	16	1444442	1444442	C	A	SNP	UNKL	ENST00000397462	human	ensembl	74_37	-1	known	nonsense	c.1384	p.G462*	0.001	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	UNKL	HGNC	ENSG00000059145	tier1	-	-	65	0	0.00	23	8	25.81	86	0	0.00	59	21	26.25
CAC1S	0	genome.wustl.edu	37	1	201044742	201044742	+	Missense_Mutation	SNP	A	A	G			TCGA-3B-A9I3-01A-11D-A38Z-09	TCGA-3B-A9I3-10A-01D-A38Z-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f6e1ec5e-069a-468e-86f6-24657fdeff5a	1fdd19d3-2a91-411e-b3aa-e425aa45b4ce	1	201044742	201044742	A	G	SNP	CAC1S	ENST00000362061	human	ensembl	74_37	-1	known	missense	c.1829	p.V610A	1.000	pfam_Ion_trans_dom,prints_VDCCAlpha1	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_VDCC_L_a1ssu	-	no_errors	CAC1S	HGNC	ENSG00000081248	tier1	-	-	28	0	0.00	66	9	12.00	55	0	0.00	112	8	6.67
C9orf78	0	genome.wustl.edu	37	9	132597501	132597501	+	R	SNP	G	G	C			TCGA-3B-A9I3-01A-11D-A38Z-09	TCGA-3B-A9I3-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f6e1ec5e-069a-468e-86f6-24657fdeff5a	1fdd19d3-2a91-411e-b3aa-e425aa45b4ce	9	132597501	132597501	G	C	SNP	C9orf78	ENST00000461349	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	C9orf78	HGNC	ENSG00000136819	tier1	-	-	83	0	0.00	23	13	35.14	13	0	0.00	5	0	0.00
MATN4	0	genome.wustl.edu	37	20	43926658	43926658	+	Silent	SNP	G	G	A			TCGA-3B-A9I3-01A-11D-A38Z-09	TCGA-3B-A9I3-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f6e1ec5e-069a-468e-86f6-24657fdeff5a	1fdd19d3-2a91-411e-b3aa-e425aa45b4ce	20	43926658	43926658	G	A	SNP	MATN4	ENST00000372754	human	ensembl	74_37	-1	known	silent	c.1602	p.R534	0.003	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_EGF-like_Ca-bd_dom,pfam_Matrilin_coiled-coil_trimer,smart_VWF_A,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_VWF_A	-	no_errors	MATN4	HGNC	ENSG00000124159	tier1	-	-	68	0	0.00	34	11	23.91	10	0	0.00	6	0	0.00
PPP1R16A	0	genome.wustl.edu	37	8	145725733	145725733	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9I3-01A-11D-A38Z-09	TCGA-3B-A9I3-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f6e1ec5e-069a-468e-86f6-24657fdeff5a	1fdd19d3-2a91-411e-b3aa-e425aa45b4ce	8	145725733	145725733	G	A	SNP	PPP1R16A	ENST00000292539	human	ensembl	74_37	+1	known	missense	c.664	p.G222R	0.998	superfamily_Ankyrin_rpt-contain_dom,pirsf_Pase-1_reg_su_16AB_euk,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Ankyrin_rpt,pirsf_Pase-1_reg_su_16AB_euk,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	PPP1R16A	HGNC	ENSG00000160972	tier1	-	-	25	0	0.00	13	7	33.33	3	0	0.00	0	2	100.00
ZNF407	0	genome.wustl.edu	37	18	72776361	72776361	+	Missense_Mutation	SNP	G	G	T			TCGA-3B-A9I3-01A-11D-A38Z-09	TCGA-3B-A9I3-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f6e1ec5e-069a-468e-86f6-24657fdeff5a	1fdd19d3-2a91-411e-b3aa-e425aa45b4ce	18	72776361	72776361	G	T	SNP	ZNF407	ENST00000299687	human	ensembl	74_37	+1	known	missense	c.6684	p.E2228D	0.956	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,smart_Znf_U1,pfscan_Znf_C2H2	-	no_errors	ZNF407	HGNC	ENSG00000215421	tier1	-	-	187	0	0.00	72	10	12.20	41	0	0.00	21	2	8.70
ENSG00000215953	0	genome.wustl.edu	37	5	84823865	84823870	+	R	DEL	TGTGTG	TGTGTG	-			TCGA-3B-A9I3-01A-11D-A38Z-09	TCGA-3B-A9I3-10A-01D-A38Z-09	TGTGTG	TGTGTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f6e1ec5e-069a-468e-86f6-24657fdeff5a	1fdd19d3-2a91-411e-b3aa-e425aa45b4ce	5	84823865	84823870	TGTGTG	-	DEL	ENSG00000215953	ENST00000401134	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.004:0.002:0.002:0.001:0.001:0.001	-	-	-	no_errors	AC026700.1	Clone_based_ensembl_gene	ENSG00000215953	tier1			16	0	0.00	36	2	5.26	16	0	0.00	36	2	5.26
