Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
UHRF1	0	genome.wustl.edu	37	19	4932853	4932853	+	R	SNP	A	A	C			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	19	4932853	4932853	A	C	SNP	UHRF1	ENST00000262952	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	UHRF1	HGNC	ENSG00000034063	tier1	-	-	83	0	0.00	64	167	72.29	67	0	0.00	51	90	63.83
HERC1	0	genome.wustl.edu	37	15	63952050	63952050	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	15	63952050	63952050	T	A	SNP	HERC1	ENST00000443617	human	ensembl	74_37	-1	known	missense	c.9309	p.L3103F	0.998	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657	tier1	-	-	76	0	0.00	46	15	24.59	108	0	0.00	64	20	23.81
PDZD2	0	genome.wustl.edu	37	5	32088673	32088673	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	5	32088673	32088673	G	A	SNP	PDZD2	ENST00000282493	human	ensembl	74_37	+1	known	missense	c.5119	p.E1707K	0.034	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD2	HGNC	ENSG00000133401	tier1	-	-	33	0	0.00	55	47	46.08	109	1	0.91	130	167	56.04
PROCA1	0	genome.wustl.edu	37	17	27031194	27031194	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	17	27031194	27031194	G	C	SNP	PROCA1	ENST00000439862	human	ensembl	74_37	-1	known	missense	c.399	p.I133M	0.996	superfamily_PLipase_A2_dom	pfam_PLipase_A2,superfamily_PLipase_A2_dom	-	no_errors	PROCA1	HGNC	ENSG00000167525	tier1	-	-	39	0	0.00	24	4	14.29	88	0	0.00	50	10	16.39
RTP3	0	genome.wustl.edu	37	3	46539582	46539582	+	Silent	SNP	A	A	G			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	3	46539582	46539582	A	G	SNP	RTP3	ENST00000296142	human	ensembl	74_37	+1	known	silent	c.30	p.Q10	0.000	NULL	NULL	-	no_errors	RTP3	HGNC	ENSG00000163825	tier1	-	-	17	0	0.00	11	4	26.67	134	0	0.00	71	17	19.10
SCN9A	0	genome.wustl.edu	37	2	167136889	167136889	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	2	167136889	167136889	T	A	SNP	SCN9A	ENST00000303354	human	ensembl	74_37	-1	known	missense	c.2324	p.N775I	0.718	NULL	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN9A	HGNC	ENSG00000169432	tier1	-	-	113	0	0.00	64	12	15.79	115	0	0.00	85	21	19.81
IF17	0	genome.wustl.edu	37	9	21227659	21227659	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	9	21227659	21227659	T	C	SNP	IF17	ENST00000413767	human	ensembl	74_37	-1	known	missense	c.514	p.M172V	0.000	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IF17	HGNC	ENSG00000234829	tier1	-	-	102	0	0.00	50	19	27.54	30	0	0.00	25	15	37.50
TMEM182	0	genome.wustl.edu	37	2	103414356	103414356	+	Silent	SNP	G	G	A			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	2	103414356	103414356	G	A	SNP	TMEM182	ENST00000412401	human	ensembl	74_37	+1	known	silent	c.366	p.L122	0.998	NULL	NULL	-	no_errors	TMEM182	HGNC	ENSG00000170417	tier1	-	-	48	0	0.00	38	15	28.30	92	0	0.00	62	25	28.74
IFNLR1	0	genome.wustl.edu	37	1	24484158	24484158	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	1	24484158	24484158	G	A	SNP	IFNLR1	ENST00000327535	human	ensembl	74_37	-1	known	missense	c.1025	p.P342L	0.914	NULL	superfamily_Fibronectin_type3	-	no_errors	IFNLR1	HGNC	ENSG00000185436	tier1	-	-	65	0	0.00	54	17	23.94	107	0	0.00	49	28	36.36
METTL21B	0	genome.wustl.edu	37	12	58168434	58168434	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	12	58168434	58168434	G	T	SNP	METTL21B	ENST00000333012	human	ensembl	74_37	+1	known	missense	c.312	p.E104D	0.000	NULL	pfam_Nicotinamide_N-MeTfrase-like	-	no_errors	METTL21B	HGNC	ENSG00000123427	tier1	-	-	38	0	0.00	462	145	23.89	102	0	0.00	919	204	18.15
IL7R	0	genome.wustl.edu	37	5	35873642	35873642	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	5	35873642	35873642	A	G	SNP	IL7R	ENST00000303115	human	ensembl	74_37	+1	known	missense	c.598	p.M200V	0.804	pfam_Fibronectin_type3,superfamily_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3	-	no_errors	IL7R	HGNC	ENSG00000168685	tier1	-	-	34	0	0.00	23	10	30.30	57	0	0.00	30	15	33.33
BNC1	0	genome.wustl.edu	37	15	83932020	83932020	+	Silent	SNP	C	C	T			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	15	83932020	83932020	C	T	SNP	BNC1	ENST00000345382	human	ensembl	74_37	-1	known	silent	c.1983	p.G661	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BNC1	HGNC	ENSG00000169594	tier1	-	-	48	0	0.00	32	17	34.00	91	0	0.00	74	25	25.25
LOC100286922	0	genome.wustl.edu	37	2	234663718	234663718	+	R	SNP	G	G	A			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	2	234663718	234663718	G	A	SNP	LOC100286922	ENST00000389816	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	AC114812.5	Clone_based_vega_gene	ENSG00000178836	tier1	-	-	88	0	0.00	39	12	23.53	53	0	0.00	44	14	24.14
USP30	0	genome.wustl.edu	37	12	109511301	109511301	+	Silent	SNP	C	C	G			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	12	109511301	109511301	C	G	SNP	USP30	ENST00000257548	human	ensembl	74_37	+1	known	silent	c.684	p.L228	0.899	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP30	HGNC	ENSG00000135093	tier1	-	-	29	0	0.00	21	8	27.59	133	0	0.00	58	39	40.21
CD84	0	genome.wustl.edu	37	1	160523553	160523553	+	R	SNP	G	G	A			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	1	160523553	160523553	G	A	SNP	CD84	ENST00000368047	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CD84	HGNC	ENSG00000066294	tier1	-	-	19	0	0.00	16	4	20.00	94	0	0.00	53	17	24.29
METTL21B	0	genome.wustl.edu	37	12	58168459	58168459	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	12	58168459	58168459	G	C	SNP	METTL21B	ENST00000333012	human	ensembl	74_37	+1	known	missense	c.337	p.E113Q	0.002	NULL	pfam_Nicotinamide_N-MeTfrase-like	-	no_errors	METTL21B	HGNC	ENSG00000123427	tier1	-	-	38	0	0.00	517	177	25.47	99	0	0.00	901	202	18.28
LRRN4	0	genome.wustl.edu	37	20	6022395	6022395	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	20	6022395	6022395	G	A	SNP	LRRN4	ENST00000378858	human	ensembl	74_37	-1	known	missense	c.1496	p.P499L	0.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	LRRN4	HGNC	ENSG00000125872	tier1	-	-	61	0	0.00	25	18	41.86	57	0	0.00	43	10	18.87
FCRLA	0	genome.wustl.edu	37	1	161680486	161680486	+	R	SNP	C	C	T			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	1	161680486	161680486	C	T	SNP	FCRLA	ENST00000470841	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	FCRLA	HGNC	ENSG00000132185	tier1	-	-	47	0	0.00	50	17	25.37	98	0	0.00	55	13	19.12
TUSC3	0	genome.wustl.edu	37	8	15508302	15508302	+	Silent	SNP	G	G	A			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	8	15508302	15508302	G	A	SNP	TUSC3	ENST00000503731	human	ensembl	74_37	+1	known	silent	c.405	p.E135	0.997	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	pfam_OligosaccharylTrfase_OST3/OST6,pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TUSC3	HGNC	ENSG00000104723	tier1	-	-	152	0	0.00	66	17	20.24	107	0	0.00	51	28	35.44
OR4D10	0	genome.wustl.edu	37	11	59245419	59245419	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	11	59245419	59245419	G	A	SNP	OR4D10	ENST00000530162	human	ensembl	74_37	+1	known	missense	c.517	p.V173I	0.169	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4D10	HGNC	ENSG00000254466	tier1	-	-	73	0	0.00	32	15	31.91	69	0	0.00	41	22	34.92
ITPR2	0	genome.wustl.edu	37	12	26755360	26755360	+	Silent	SNP	C	C	T			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	12	26755360	26755360	C	T	SNP	ITPR2	ENST00000381340	human	ensembl	74_37	-1	known	silent	c.3621	p.L1207	1.000	pfam_Ca-rel_channel,superfamily_ARM-type_fold	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR2	HGNC	ENSG00000123104	tier1	-	-	21	0	0.00	15	6	28.57	113	0	0.00	86	28	24.14
TDRD12	0	genome.wustl.edu	37	19	33240749	33240749	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	19	33240749	33240749	C	A	SNP	TDRD12	ENST00000444215	human	ensembl	74_37	+1	known	missense	c.556	p.L186I	1.000	NULL	pfam_Tudor,pfam_D/R_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase	-	no_errors	TDRD12	HGNC	ENSG00000173809	tier1	-	-	21	0	0.00	22	5	18.52	112	0	0.00	70	21	23.08
MKI67	0	genome.wustl.edu	37	10	129910646	129910646	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	10	129910646	129910646	G	T	SNP	MKI67	ENST00000368654	human	ensembl	74_37	-1	known	missense	c.1720	p.Q574K	0.000	NULL	pfam_K167R,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MKI67	HGNC	ENSG00000148773	tier1	-	-	38	0	0.00	31	13	28.26	128	0	0.00	99	48	32.65
SLTM	0	genome.wustl.edu	37	15	59192056	59192056	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	15	59192056	59192056	T	C	SNP	SLTM	ENST00000380516	human	ensembl	74_37	-1	known	missense	c.670	p.T224A	1.000	NULL	pfam_RRM_dom,pfam_SAP_dom,smart_SAP_dom,smart_RRM_dom,pfscan_SAP_dom,pfscan_RRM_dom	-	no_errors	SLTM	HGNC	ENSG00000137776	tier1	-	-	18	0	0.00	9	6	40.00	62	0	0.00	44	29	39.73
APOB	0	genome.wustl.edu	37	2	21263893	21263893	+	Silent	SNP	T	T	C			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	2	21263893	21263893	T	C	SNP	APOB	ENST00000233242	human	ensembl	74_37	-1	known	silent	c.300	p.K100	0.139	pfam_Lipid_transpt_N,superfamily_Lipid_transp_b-sht_shell,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	tier1	-	-	52	0	0.00	24	8	25.00	75	0	0.00	53	21	28.38
SRRT	0	genome.wustl.edu	37	7	100482417	100482417	+	Silent	SNP	C	C	T			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	7	100482417	100482417	C	T	SNP	SRRT	ENST00000388793	human	ensembl	74_37	+1	known	silent	c.999	p.D333	0.989	NULL	pfam_Arsenite-R_2,pfam_DUF3546	-	no_errors	SRRT	HGNC	ENSG00000087087	tier1	rs201815722	GMAF=0.0005	65	0	0.00	31	17	35.42	85	0	0.00	37	16	30.19
PDZD2	0	genome.wustl.edu	37	5	32089053	32089053	+	Silent	SNP	G	G	A			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	5	32089053	32089053	G	A	SNP	PDZD2	ENST00000282493	human	ensembl	74_37	+1	known	silent	c.5499	p.K1833	0.074	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD2	HGNC	ENSG00000133401	tier1	-	-	31	0	0.00	11	9	42.86	154	0	0.00	155	128	45.23
ZNF610	0	genome.wustl.edu	37	19	52869387	52869387	+	Missense_Mutation	SNP	A	A	C			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	19	52869387	52869387	A	C	SNP	ZNF610	ENST00000321287	human	ensembl	74_37	+1	known	missense	c.756	p.R252S	0.004	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF610	HGNC	ENSG00000167554	tier1	-	-	41	0	0.00	18	8	30.77	77	0	0.00	40	12	23.08
TMTC3	0	genome.wustl.edu	37	12	88582692	88582692	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	12	88582692	88582692	C	G	SNP	TMTC3	ENST00000266712	human	ensembl	74_37	+1	known	missense	c.1505	p.S502C	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_2,pfam_TPR_1,pfam_DUF1736,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC3	HGNC	ENSG00000139324	tier1	-	-	15	0	0.00	8	106	92.98	66	0	0.00	51	386	88.13
ZNF827	0	genome.wustl.edu	37	4	146700609	146700609	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	4	146700609	146700609	T	C	SNP	ZNF827	ENST00000508784	human	ensembl	74_37	-1	known	missense	c.2438	p.N813S	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF827	HGNC	ENSG00000151612	tier1	-	-	56	0	0.00	40	8	16.67	121	0	0.00	77	41	34.75
CEP170P1	0	genome.wustl.edu	37	4	119475261	119475261	+	R	SNP	T	T	C			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	4	119475261	119475261	T	C	SNP	CEP170P1	ENST00000412784	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.475	-	-	-	no_errors	CEP170P1	HGNC	ENSG00000154608	tier1	-	-	29	0	0.00	16	12	42.86	74	0	0.00	59	19	24.36
PDZD2	0	genome.wustl.edu	37	5	32088856	32088856	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	5	32088856	32088856	G	A	SNP	PDZD2	ENST00000282493	human	ensembl	74_37	+1	known	missense	c.5302	p.G1768R	0.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD2	HGNC	ENSG00000133401	tier1	-	-	92	0	0.00	69	74	51.75	121	0	0.00	152	172	53.09
CXorf40A	0	genome.wustl.edu	37	X	148628297	148628297	+	Missense_Mutation	SNP	T	T	G			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	X	148628297	148628297	T	G	SNP	CXorf40A	ENST00000359293	human	ensembl	74_37	+1	known	missense	c.266	p.I89S	0.893	superfamily_PUA-like_domain	superfamily_PUA-like_domain	-	no_errors	CXorf40A	HGNC	ENSG00000197620	tier1	-	-	76	0	0.00	52	13	20.00	75	0	0.00	30	13	30.23
NFASC	0	genome.wustl.edu	37	1	204945807	204945807	+	Missense_Mutation	SNP	A	A	C			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	1	204945807	204945807	A	C	SNP	NFASC	ENST00000367172	human	ensembl	74_37	+1	known	missense	c.1715	p.K572T	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	NFASC	HGNC	ENSG00000163531	tier1	-	-	64	0	0.00	46	7	13.21	117	0	0.00	79	11	12.22
MYOCD	0	genome.wustl.edu	37	17	12666834	12666834	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	17	12666834	12666834	C	T	SNP	MYOCD	ENST00000425538	human	ensembl	74_37	+1	known	missense	c.2834	p.P945L	1.000	NULL	pfam_RPEL_repeat,pfam_SAP_dom,smart_RPEL_repeat,smart_SAP_dom,pfscan_RPEL_repeat,pfscan_SAP_dom	-	no_errors	MYOCD	HGNC	ENSG00000141052	tier1	rs139170912	-	55	0	0.00	20	18	47.37	71	0	0.00	60	19	24.05
EPB41	0	genome.wustl.edu	37	1	29365852	29365852	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	1	29365852	29365852	C	G	SNP	EPB41	ENST00000343067	human	ensembl	74_37	+1	known	missense	c.1550	p.T517S	1.000	pirsf_Band_41_protein,pfam_FERM-adjacent	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB_dom,pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like,pfscan_FERM_domain	-	no_errors	EPB41	HGNC	ENSG00000159023	tier1	-	-	62	0	0.00	44	6	12.00	83	0	0.00	80	13	13.98
CUL4B	0	genome.wustl.edu	37	X	119672572	119672572	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	X	119672572	119672572	C	A	SNP	CUL4B	ENST00000404115	human	ensembl	74_37	-1	known	missense	c.1849	p.V617F	1.000	pfam_Cullin_N,superfamily_Cullin_homology,smart_Cullin_homology,pfscan_Cullin_homology	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL4B	HGNC	ENSG00000158290	tier1	-	-	74	0	0.00	52	24	31.58	99	0	0.00	60	17	22.08
HR	0	genome.wustl.edu	37	8	21986391	21986391	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	8	21986391	21986391	C	T	SNP	HR	ENST00000381418	human	ensembl	74_37	-1	known	missense	c.293	p.R98H	0.988	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	HR	HGNC	ENSG00000168453	tier1	-	-	64	0	0.00	44	9	16.98	57	0	0.00	31	15	31.91
ABCC10	0	genome.wustl.edu	37	6	43403588	43403588	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	6	43403588	43403588	C	T	SNP	ABCC10	ENST00000372530	human	ensembl	74_37	+1	known	missense	c.1708	p.R570W	1.000	superfamily_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC10	HGNC	ENSG00000124574	tier1	-	-	40	0	0.00	22	6	21.43	146	0	0.00	76	35	31.53
SKIL	0	genome.wustl.edu	37	3	170078753	170078753	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	3	170078753	170078753	C	T	SNP	SKIL	ENST00000259119	human	ensembl	74_37	+1	known	missense	c.634	p.P212S	1.000	pfam_Transform_Ski,superfamily_D-bd_dom_put	pfam_c-SKI_SMAD4-bd_dom,pfam_Transform_Ski,superfamily_SAND_dom-like,superfamily_D-bd_dom_put	-	no_errors	SKIL	HGNC	ENSG00000136603	tier1	-	-	24	0	0.00	13	6	31.58	81	0	0.00	41	24	36.36
POU2F1	0	genome.wustl.edu	37	1	167381363	167381363	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	1	167381363	167381363	C	T	SNP	POU2F1	ENST00000367866	human	ensembl	74_37	+1	known	missense	c.1723	p.P575S	0.999	NULL	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_D-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU,prints_TF_octamer	-	no_errors	POU2F1	HGNC	ENSG00000143190	tier1	-	-	48	0	0.00	103	15	12.71	94	0	0.00	264	51	16.19
RHCG	0	genome.wustl.edu	37	15	90020057	90020057	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	15	90020057	90020057	G	A	SNP	RHCG	ENST00000268122	human	ensembl	74_37	-1	known	missense	c.1240	p.L414F	0.000	pfam_NH4_transpt_AmtB-like_dom,superfamily_NH4_transpt_AmtB-like_dom	pfam_NH4_transpt_AmtB-like_dom,superfamily_NH4_transpt_AmtB-like_dom,prints_RhesusRHD	-	no_errors	RHCG	HGNC	ENSG00000140519	tier1	-	-	30	0	0.00	30	8	21.05	86	0	0.00	73	22	22.92
SMG7	0	genome.wustl.edu	37	1	183497112	183497112	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	1	183497112	183497112	G	T	SNP	SMG7	ENST00000507469	human	ensembl	74_37	+1	known	missense	c.506	p.S169I	1.000	pfam_EST1	pfam_EST1	-	no_errors	SMG7	HGNC	ENSG00000116698	tier1	-	-	26	0	0.00	19	8	29.63	79	0	0.00	46	15	24.59
METTL21B	0	genome.wustl.edu	37	12	58168428	58168428	+	Silent	SNP	G	G	T			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	12	58168428	58168428	G	T	SNP	METTL21B	ENST00000333012	human	ensembl	74_37	+1	known	silent	c.306	p.V102	0.010	NULL	pfam_Nicotinamide_N-MeTfrase-like	-	no_errors	METTL21B	HGNC	ENSG00000123427	tier1	-	-	37	0	0.00	451	143	24.03	99	0	0.00	895	201	18.31
TFDP3	0	genome.wustl.edu	37	X	132351355	132351355	+	Silent	SNP	G	G	A			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	X	132351355	132351355	G	A	SNP	TFDP3	ENST00000310125	human	ensembl	74_37	-1	known	silent	c.933	p.A311	0.998	pfam_Transc_factor_DP_C,pirsf_Transcrpt_fac_DP	pfam_Transc_factor_DP_C,pfam_E2F_TDP,pirsf_Transcrpt_fac_DP	-	no_errors	TFDP3	HGNC	ENSG00000183434	tier1	-	-	40	0	0.00	32	10	23.81	59	0	0.00	21	11	34.38
TTN	0	genome.wustl.edu	37	2	179476124	179476124	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	2	179476124	179476124	T	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.43128	p.E14376D	1.000	superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657	tier1	-	-	23	0	0.00	24	7	22.58	70	0	0.00	37	13	26.00
SI	0	genome.wustl.edu	37	3	164786611	164786611	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	3	164786611	164786611	C	T	SNP	SI	ENST00000264382	human	ensembl	74_37	-1	known	missense	c.382	p.A128T	0.990	superfamily_Gal_mutarotase_SF_dom	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,smart_P_trefoil	-	no_errors	SI	HGNC	ENSG00000090402	tier1	-	-	63	0	0.00	37	21	36.21	68	0	0.00	56	21	27.27
PRLHR	0	genome.wustl.edu	37	10	120353829	120353829	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	10	120353829	120353829	G	T	SNP	PRLHR	ENST00000239032	human	ensembl	74_37	-1	known	missense	c.928	p.P310T	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Prolrel_pep_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Prolrel_pep_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	PRLHR	HGNC	ENSG00000119973	tier1	-	-	73	0	0.00	42	10	19.23	29	0	0.00	15	6	28.57
MMP3	0	genome.wustl.edu	37	11	102712894	102712894	+	Frame_Shift_Del	DEL	C	C	-			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	11	102712894	102712894	C	-	DEL	MMP3	ENST00000299855	human	ensembl	74_37	-1	known	frame_shift_del	c.616	p.D206fs	0.219	pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo	pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP3	HGNC	ENSG00000149968	tier1			52	0	0.00	34	14	29.17	106	0	0.00	68	20	22.73
ZNRF4	0	genome.wustl.edu	37	19	5456046	5456046	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	19	5456046	5456046	G	A	SNP	ZNRF4	ENST00000222033	human	ensembl	74_37	+1	known	missense	c.544	p.A182T	0.748	pfam_Protease-assoc_domain	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	ZNRF4	HGNC	ENSG00000105428	tier1	-	-	32	0	0.00	32	8	20.00	41	0	0.00	5	3	37.50
SMC4	0	genome.wustl.edu	37	3	160148853	160148853	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	3	160148853	160148853	A	G	SNP	SMC4	ENST00000344722	human	ensembl	74_37	+1	known	missense	c.2974	p.N992D	0.000	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase	pfam_RecF/RecN/SMC_N,pfam_SMC_hinge,superfamily_P-loop_NTPase,superfamily_SMC_hinge,superfamily_Chemotax_Me-accpt_rcpt_lig-bd,superfamily_Prefoldin,smart_SMC_hinge	-	no_errors	SMC4	HGNC	ENSG00000113810	tier1	-	-	49	0	0.00	29	6	17.14	95	0	0.00	75	4	5.06
HIST2H2AB	0	genome.wustl.edu	37	1	149859187	149859187	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	1	149859187	149859187	G	C	SNP	HIST2H2AB	ENST00000331128	human	ensembl	74_37	-1	known	missense	c.280	p.L94V	1.000	superfamily_Histone-fold,smart_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST2H2AB	HGNC	ENSG00000184270	tier1	-	-	54	0	0.00	43	6	12.24	82	0	0.00	66	6	8.22
LYZ	0	genome.wustl.edu	37	12	69744056	69744056	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	12	69744056	69744056	A	G	SNP	LYZ	ENST00000548839	human	ensembl	74_37	+1	putative	missense	c.305	p.K102R	1.000	smart_Glyco_hydro_22,prints_Glyco_hydro_22	pfam_Glyco_hydro_22,pfam_TGlycosylase-like_SLT,superfamily_Lysozyme-like_dom,smart_Glyco_hydro_22,prints_Glyco_hydro_22_lys,prints_Glyco_hydro_22	-	no_errors	LYZ	HGNC	ENSG00000090382	tier1	-	-	29	0	0.00	439	39	8.16	91	0	0.00	1728	165	8.72
CPNE8	0	genome.wustl.edu	37	12	39124125	39124125	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	12	39124125	39124125	C	T	SNP	CPNE8	ENST00000331366	human	ensembl	74_37	-1	known	missense	c.758	p.R253K	1.000	superfamily_C2_dom,smart_C2_dom	pfam_Copine,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,smart_VWF_A,pfscan_C2_dom,pfscan_VWF_A	-	no_errors	CPNE8	HGNC	ENSG00000139117	tier1	-	-	82	0	0.00	67	9	11.84	102	0	0.00	95	10	9.52
GIGYF1	0	genome.wustl.edu	37	7	100279600	100279600	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	7	100279600	100279600	C	T	SNP	GIGYF1	ENST00000275732	human	ensembl	74_37	-1	known	missense	c.2942	p.S981N	0.960	NULL	pfam_GYF,superfamily_GYF,smart_GYF,pfscan_GYF	-	no_errors	GIGYF1	HGNC	ENSG00000146830	tier1	-	-	72	0	0.00	42	19	30.65	9	0	0.00	3	0	0.00
KIAA1279	0	genome.wustl.edu	37	10	70748980	70748980	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	10	70748980	70748980	C	T	SNP	KIAA1279	ENST00000361983	human	ensembl	74_37	+1	known	missense	c.392	p.S131L	0.989	NULL	pfam_KBP	-	no_errors	KIAA1279	HGNC	ENSG00000198954	tier1	-	-	43	0	0.00	34	4	10.53	18	0	0.00	6	0	0.00
ENSG00000215941	0	genome.wustl.edu	37	3	38948802	38948813	+	R	DEL	TGTGTGTGTGTG	TGTGTGTGTGTG	-			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	TGTGTGTGTGTG	TGTGTGTGTGTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	3	38948802	38948813	TGTGTGTGTGTG	-	DEL	ENSG00000215941	ENST00000401122	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.000:0.001:0.005:0.007:0.015:0.028:0.021:0.020:0.022:0.022:0.028:0.032	-	-	-	no_errors	AC116038.1	Clone_based_ensembl_gene	ENSG00000215941	tier1			0	0	0.00	0	0	0.00	0	0	0.00	0	0	0.00
LOC101927345	0	genome.wustl.edu	37	1	143378289	143378289	+	R	SNP	G	G	T			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	1	143378289	143378289	G	T	SNP	LOC101927345	ENST00000428624	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.026	-	-	-	no_errors	RP11-435B5.5	Clone_based_vega_gene	ENSG00000238261	tier1	-	-	123	0	0.00	75	21	21.88	1	0	0.00	0	0	0.00
MUC4	0	genome.wustl.edu	37	3	195509286	195509286	+	Silent	SNP	G	G	A			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	3	195509286	195509286	G	A	SNP	MUC4	ENST00000463781	human	ensembl	74_37	-1	known	silent	c.9165	p.N3055	0.001	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EG-like_dom,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	tier1	-	-	168	0	0.00	110	17	13.39	2	0	0.00	4	0	0.00
PRR21	0	genome.wustl.edu	37	2	240982144	240982144	+	Frame_Shift_Del	DEL	T	T	-			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	2	240982144	240982144	T	-	DEL	PRR21	ENST00000408934	human	ensembl	74_37	-1	known	frame_shift_del	c.256	p.S86fs	0.000	NULL	NULL	-	no_errors	PRR21	HGNC	ENSG00000221961	tier1			15	0	0.00	7	3	30.00	0	0	0.00	2	0	0.00
TRAM1	0	genome.wustl.edu	37	8	71520527	71520527	+	R	SNP	C	C	T			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	8	71520527	71520527	C	T	SNP	TRAM1	ENST00000520700	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	TRAM1	HGNC	ENSG00000067167	tier1	-	-	11	0	0.00	5	6	54.55	1	0	0.00	1	1	50.00
CFTR	0	genome.wustl.edu	37	7	117188766	117188766	+	Silent	SNP	C	C	T			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	7	117188766	117188766	C	T	SNP	CFTR	ENST00000003084	human	ensembl	74_37	+1	known	silent	c.1281	p.S427	0.424	superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,pfscan_ABC_transporter-like,tigrfam_cAMP_cl_channel	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_CysFib_conduc_TM,tigrfam_cAMP_cl_channel	-	no_errors	CFTR	HGNC	ENSG00000001626	tier1	-	-	105	0	0.00	75	9	10.71	55	0	0.00	38	3	7.32
CEACAM20	0	genome.wustl.edu	37	19	45029180	45029180	+	R	SNP	A	A	T			TCGA-DX-A1L3-01A-11D-A24N-09	TCGA-DX-A1L3-10A-01D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	18ec066e-8510-4921-9e35-45d85fb01e38	7f34c3a1-efee-47c6-bd61-502061fec7e3	19	45029180	45029180	A	T	SNP	CEACAM20	ENST00000316962	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	CEACAM20	HGNC	ENSG00000176395	tier1	-	-	67	0	0.00	63	6	8.70	104	0	0.00	105	3	2.78
