Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
SDK1	0	genome.wustl.edu	37	7	4091396	4091396	+	Silent	SNP	C	C	T			TCGA-DX-A23T-01A-11D-A26G-09	TCGA-DX-A23T-10A-01D-A26G-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dbc6f717-fbc5-40d2-b105-da9a150b454f	b5482bab-e0c8-4a78-b485-a9d4bcfe9203	7	4091396	4091396	C	T	SNP	SDK1	ENST00000404826	human	ensembl	74_37	+1	known	silent	c.2845	p.L949	0.979	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	SDK1	HGNC	ENSG00000146555	tier1	-	-	32	0	0.00	190	34	15.18	120	0	0.00	468	77	14.10
FEM1C	0	genome.wustl.edu	37	5	114860080	114860080	+	Silent	SNP	G	G	A			TCGA-DX-A23T-01A-11D-A26G-09	TCGA-DX-A23T-10A-01D-A26G-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dbc6f717-fbc5-40d2-b105-da9a150b454f	b5482bab-e0c8-4a78-b485-a9d4bcfe9203	5	114860080	114860080	G	A	SNP	FEM1C	ENST00000274457	human	ensembl	74_37	-1	known	silent	c.1779	p.V593	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	FEM1C	HGNC	ENSG00000145780	tier1	-	-	45	0	0.00	79	15	15.79	80	0	0.00	126	32	20.25
ADAM32	0	genome.wustl.edu	37	8	39080584	39080584	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A23T-01A-11D-A26G-09	TCGA-DX-A23T-10A-01D-A26G-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dbc6f717-fbc5-40d2-b105-da9a150b454f	b5482bab-e0c8-4a78-b485-a9d4bcfe9203	8	39080584	39080584	G	C	SNP	ADAM32	ENST00000379907	human	ensembl	74_37	+1	known	missense	c.1352	p.R451T	0.978	pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM32	HGNC	ENSG00000197140	tier1	-	-	28	0	0.00	23	3	11.54	103	0	0.00	92	18	16.36
FEM1C	0	genome.wustl.edu	37	5	114860112	114860112	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A23T-01A-11D-A26G-09	TCGA-DX-A23T-10A-01D-A26G-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dbc6f717-fbc5-40d2-b105-da9a150b454f	b5482bab-e0c8-4a78-b485-a9d4bcfe9203	5	114860112	114860112	G	A	SNP	FEM1C	ENST00000274457	human	ensembl	74_37	-1	known	missense	c.1747	p.H583Y	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	FEM1C	HGNC	ENSG00000145780	tier1	-	-	39	0	0.00	75	18	19.35	86	0	0.00	130	30	18.75
CP	0	genome.wustl.edu	37	3	148919931	148919931	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A23T-01A-11D-A26G-09	TCGA-DX-A23T-10A-01D-A26G-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dbc6f717-fbc5-40d2-b105-da9a150b454f	b5482bab-e0c8-4a78-b485-a9d4bcfe9203	3	148919931	148919931	G	C	SNP	CP	ENST00000264613	human	ensembl	74_37	-1	known	missense	c.1306	p.R436G	0.000	superfamily_Cupredoxin	pfam_Cu-oxidase_2,pfam_Cu-oxidase_3,pfam_Cu-oxidase,superfamily_Cupredoxin	-	no_errors	CP	HGNC	ENSG00000047457	tier1	-	-	43	0	0.00	45	8	15.09	128	0	0.00	134	22	14.01
FEM1C	0	genome.wustl.edu	37	5	114860070	114860070	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A23T-01A-11D-A26G-09	TCGA-DX-A23T-10A-01D-A26G-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dbc6f717-fbc5-40d2-b105-da9a150b454f	b5482bab-e0c8-4a78-b485-a9d4bcfe9203	5	114860070	114860070	G	A	SNP	FEM1C	ENST00000274457	human	ensembl	74_37	-1	known	missense	c.1789	p.H597Y	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	FEM1C	HGNC	ENSG00000145780	tier1	-	-	42	0	0.00	80	16	16.49	74	0	0.00	118	28	19.05
FLG	0	genome.wustl.edu	37	1	152278006	152278006	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A23T-01A-11D-A26G-09	TCGA-DX-A23T-10A-01D-A26G-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dbc6f717-fbc5-40d2-b105-da9a150b454f	b5482bab-e0c8-4a78-b485-a9d4bcfe9203	1	152278006	152278006	C	T	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.9356	p.G3119E	0.003	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	tier1	-	-	60	0	0.00	62	14	18.42	12	0	0.00	13	6	31.58
KDR	0	genome.wustl.edu	37	4	55980332	55980332	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A23T-01A-11D-A26G-09	TCGA-DX-A23T-10A-01D-A26G-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dbc6f717-fbc5-40d2-b105-da9a150b454f	b5482bab-e0c8-4a78-b485-a9d4bcfe9203	4	55980332	55980332	A	T	SNP	KDR	ENST00000263923	human	ensembl	74_37	-1	known	missense	c.759	p.N253K	0.692	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_VEGFR2_rcpt	-	no_errors	KDR	HGNC	ENSG00000128052	tier1	-	-	50	0	0.00	50	6	10.71	197	0	0.00	160	15	8.57
T10	0	genome.wustl.edu	37	11	34130376	34130376	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A23T-01A-11D-A26G-09	TCGA-DX-A23T-10A-01D-A26G-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dbc6f717-fbc5-40d2-b105-da9a150b454f	b5482bab-e0c8-4a78-b485-a9d4bcfe9203	11	34130376	34130376	A	G	SNP	T10	ENST00000257829	human	ensembl	74_37	+1	known	missense	c.196	p.S66G	1.000	NULL	pfam_Helicase_dom,pfam_DUF1726,superfamily_Acyl_CoA_acyltransferase,superfamily_P-loop_NTPase,pfscan_GT_dom	-	no_errors	T10	HGNC	ENSG00000135372	tier1	-	-	57	0	0.00	55	5	8.33	141	0	0.00	102	10	8.93
GAPVD1	0	genome.wustl.edu	37	9	128025963	128025989	+	Splice_Site	DEL	CAGCACTCCATCTGTAGGTATGTCTGT	CAGCACTCCATCTGTAGGTATGTCTGT	-			TCGA-DX-A23T-01A-11D-A26G-09	TCGA-DX-A23T-10A-01D-A26G-09	CAGCACTCCATCTGTAGGTATGTCTGT	CAGCACTCCATCTGTAGGTATGTCTGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dbc6f717-fbc5-40d2-b105-da9a150b454f	b5482bab-e0c8-4a78-b485-a9d4bcfe9203	9	128025963	128025989	CAGCACTCCATCTGTAGGTATGTCTGT	-	DEL	GAPVD1	ENST00000469528	human	ensembl	74_37	+1	known	splice_site_del	c.NULL	NULL	1.000:1.000:1.000:1.000:1.000:0.999:0.996:0.980:0.970:0.963:0.961:0.959:0.952:0.948:0.947:0.950:0.961:0.966:0.966:0.969:0.974:0.982:0.984:0.985:0.984:0.985:0.993	-	-	-	no_errors	GAPVD1	HGNC	ENSG00000165219	tier1			7	0	0.00	5	0	0.00	7	0	0.00	5	0	0.00
DDX11L9	0	genome.wustl.edu	37	15	102516816	102516816	+	R	SNP	G	G	T			TCGA-DX-A23T-01A-11D-A26G-09	TCGA-DX-A23T-10A-01D-A26G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dbc6f717-fbc5-40d2-b105-da9a150b454f	b5482bab-e0c8-4a78-b485-a9d4bcfe9203	15	102516816	102516816	G	T	SNP	DDX11L9	ENST00000559159	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DDX11L9	HGNC	ENSG00000248472	tier1	-	-	9	0	0.00	5	4	44.44	0	0	0.00	0	0	0.00
DNM1P51	0	genome.wustl.edu	37	15	84959328	84959328	+	R	SNP	G	G	A			TCGA-DX-A23T-01A-11D-A26G-09	TCGA-DX-A23T-10A-01D-A26G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dbc6f717-fbc5-40d2-b105-da9a150b454f	b5482bab-e0c8-4a78-b485-a9d4bcfe9203	15	84959328	84959328	G	A	SNP	DNM1P51	ENST00000558801	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.754	-	-	-	no_errors	DNM1P51	HGNC	ENSG00000235370	tier1	-	-	54	0	0.00	71	15	17.44	0	0	0.00	3	0	0.00
MSH3	0	genome.wustl.edu	37	5	79950709	79950717	+	In_Frame_Del	DEL	GCAGCGGCC	GCAGCGGCC	-			TCGA-DX-A23T-01A-11D-A26G-09	TCGA-DX-A23T-10A-01D-A26G-09	GCAGCGGCC	GCAGCGGCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dbc6f717-fbc5-40d2-b105-da9a150b454f	b5482bab-e0c8-4a78-b485-a9d4bcfe9203	5	79950709	79950717	GCAGCGGCC	-	DEL	MSH3	ENST00000265081	human	ensembl	74_37	+1	known	in_frame_del	c.163_171	p.AAA58in_frame_del	0.338:0.304:0.271:0.238:0.205:0.172:0.140:0.107:0.075	NULL	pfam_D_mismatch_repair_MutS_C,pfam_D_mismatch_repair_MutS_core,pfam_D_mmatch_repair_MutS_con_dom,pfam_D_mismatch_repair_MutS-lik_N,pfam_D_mismatch_repair_MutS_clamp,superfamily_D_mismatch_repair_MutS_core,superfamily_P-loop_NTPase,superfamily_D_mismatch_repair_MutS_N,superfamily_D_mmatch_repair_MutS_con_dom,smart_D_mismatch_repair_MutS_core,smart_D_mismatch_repair_MutS_C	-	no_errors	MSH3	HGNC	ENSG00000113318	tier1			0	0	0.00	0	1	100.00	0	0	0.00	0	1	100.00
MT-CO1	0	genome.wustl.edu	37	MT	7176	7176	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A23T-01A-11D-A26G-09	TCGA-DX-A23T-10A-01D-A26G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dbc6f717-fbc5-40d2-b105-da9a150b454f	b5482bab-e0c8-4a78-b485-a9d4bcfe9203	MT	7176	7176	T	C	SNP	MT-CO1	ENST00000361624	human	ensembl	74_37	+1	known	missense	c.1273	p.F425L	NULL	pfam_Cyt_c_Oxase_su1,superfamily_Cyt_c_Oxase_su1_dom,pfscan_Cyt_c_Oxase_su1_dom,prints_Cyt_c_Oxase_su1	pfam_Cyt_c_Oxase_su1,superfamily_Cyt_c_Oxase_su1_dom,pfscan_Cyt_c_Oxase_su1_dom,prints_Cyt_c_Oxase_su1	-	no_errors	MT-CO1	HGNC	ENSG00000198804	tier1	-	-	17	0	0.00	73	22	23.16	2	0	0.00	0	0	0.00
TBC1D3	0	genome.wustl.edu	37	17	36339584	36339584	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A23T-01A-11D-A26G-09	TCGA-DX-A23T-10A-01D-A26G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dbc6f717-fbc5-40d2-b105-da9a150b454f	b5482bab-e0c8-4a78-b485-a9d4bcfe9203	17	36339584	36339584	G	T	SNP	TBC1D3	ENST00000354664	human	ensembl	74_37	-1	known	missense	c.1073	p.P358Q	1.000	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D3	HGNC	ENSG00000197681	tier1	-	-	25	0	0.00	15	7	31.82	0	0	0.00	0	0	0.00
FAM153C	0	genome.wustl.edu	37	5	177457620	177457620	+	Silent	SNP	C	C	T			TCGA-DX-A23T-01A-11D-A26G-09	TCGA-DX-A23T-10A-01D-A26G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dbc6f717-fbc5-40d2-b105-da9a150b454f	b5482bab-e0c8-4a78-b485-a9d4bcfe9203	5	177457620	177457620	C	T	SNP	FAM153C	ENST00000511189	human	ensembl	74_37	+1	novel	silent	c.27	p.L9	0.000	NULL	prints_FAM153	-	no_errors	FAM153C	HGNC	ENSG00000204677	tier1	rs200476067	-	40	0	0.00	41	6	12.77	23	0	0.00	40	2	4.76
