Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
GVINP1	0	genome.wustl.edu	37	11	6739525	6739525	+	R	SNP	T	T	G			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	11	6739525	6739525	T	G	SNP	GVINP1	ENST00000526769	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	GVINP1	HGNC	ENSG00000254838	tier1	-	-	31	0	0.00	24	8	25.00	90	1	1.10	69	12	14.81
STXBP1	0	genome.wustl.edu	37	9	130438208	130438208	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	9	130438208	130438208	C	G	SNP	STXBP1	ENST00000373299	human	ensembl	74_37	+1	known	missense	c.1236	p.I412M	1.000	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	STXBP1	HGNC	ENSG00000136854	tier1	-	-	61	0	0.00	43	11	20.37	110	0	0.00	84	51	37.78
METTL1	0	genome.wustl.edu	37	12	58163396	58163396	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	12	58163396	58163396	G	A	SNP	METTL1	ENST00000257848	human	ensembl	74_37	-1	known	missense	c.340	p.H114Y	1.000	NULL	NULL	-	no_errors	METTL1	HGNC	ENSG00000037897	tier1	-	-	39	0	0.00	227	123	35.14	87	0	0.00	495	225	31.21
PRB3	0	genome.wustl.edu	37	12	11420936	11420936	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	12	11420936	11420936	G	A	SNP	PRB3	ENST00000381842	human	ensembl	74_37	-1	known	missense	c.247	p.P83S	0.193	NULL	NULL	-	no_errors	PRB3	HGNC	ENSG00000197870	tier1	-	-	59	0	0.00	125	126	50.00	22	0	0.00	16	19	54.29
WDFY4	0	genome.wustl.edu	37	10	50098744	50098744	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	10	50098744	50098744	G	C	SNP	WDFY4	ENST00000325239	human	ensembl	74_37	+1	known	missense	c.7288	p.V2430L	0.998	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY4	HGNC	ENSG00000128815	tier1	-	-	63	0	0.00	63	9	12.50	93	0	0.00	81	18	18.18
USP6	0	genome.wustl.edu	37	17	5072153	5072153	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	17	5072153	5072153	G	C	SNP	USP6	ENST00000250066	human	ensembl	74_37	+1	known	missense	c.3320	p.S1107T	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom,pfscan_Peptidase_C19/C67	-	no_errors	USP6	HGNC	ENSG00000129204	tier1	-	-	79	0	0.00	94	32	25.40	39	0	0.00	26	6	18.75
SLC6A18	0	genome.wustl.edu	37	5	1238115	1238115	+	Silent	SNP	C	C	G			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	5	1238115	1238115	C	G	SNP	SLC6A18	ENST00000324642	human	ensembl	74_37	+1	known	silent	c.672	p.L224	0.906	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_orphan	-	no_errors	SLC6A18	HGNC	ENSG00000164363	tier1	-	-	53	0	0.00	135	162	54.36	116	0	0.00	168	180	51.72
FSD1L	0	genome.wustl.edu	37	9	108246756	108246756	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	9	108246756	108246756	A	G	SNP	FSD1L	ENST00000539376	human	ensembl	74_37	+1	known	missense	c.88	p.M30V	1.000	superfamily_Fibronectin_type3	pfam_SPRY_rcpt,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,prints_Butyrophylin	-	no_errors	FSD1L	HGNC	ENSG00000106701	tier1	-	-	24	0	0.00	18	19	51.35	83	0	0.00	61	49	44.55
METTL1	0	genome.wustl.edu	37	12	58163174	58163174	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	12	58163174	58163174	G	A	SNP	METTL1	ENST00000324871	human	ensembl	74_37	-1	known	missense	c.587	p.T196I	1.000	pfam_tR_(Gua-N-7)_MeTrfase,tigrfam_tR_(Gua-N-7)_MeTrfase	pfam_tR_(Gua-N-7)_MeTrfase,tigrfam_tR_(Gua-N-7)_MeTrfase	-	no_errors	METTL1	HGNC	ENSG00000037897	tier1	-	-	16	0	0.00	99	40	28.78	61	0	0.00	363	210	36.59
POTEA	0	genome.wustl.edu	37	8	43159910	43159910	+	R	SNP	C	C	T			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	8	43159910	43159910	C	T	SNP	POTEA	ENST00000522175	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.062	-	-	-	no_errors	POTEA	HGNC	ENSG00000188877	tier1	-	-	70	0	0.00	252	201	44.37	34	0	0.00	23	10	30.30
RADIL	0	genome.wustl.edu	37	7	4917282	4917282	+	Silent	SNP	C	C	T			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	7	4917282	4917282	C	T	SNP	RADIL	ENST00000399583	human	ensembl	74_37	-1	known	silent	c.489	p.S163	0.078	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc	pfam_Dil_domain,pfam_Ras-assoc,pfam_PDZ,superfamily_PDZ,superfamily_SMAD_FHA_domain,smart_Ras-assoc,smart_PDZ,pfscan_Dilute,pfscan_PDZ,pfscan_Ras-assoc	-	no_errors	RADIL	HGNC	ENSG00000157927	tier1	-	-	81	0	0.00	110	23	17.29	83	0	0.00	47	26	35.62
MAGEB1	0	genome.wustl.edu	37	X	30269613	30269613	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	X	30269613	30269613	C	T	SNP	MAGEB1	ENST00000378981	human	ensembl	74_37	+1	known	missense	c.1003	p.R335C	0.000	NULL	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB1	HGNC	ENSG00000214107	tier1	-	-	60	0	0.00	84	18	17.65	111	0	0.00	100	31	23.66
FMNL3	0	genome.wustl.edu	37	12	50042925	50042925	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	12	50042925	50042925	G	A	SNP	FMNL3	ENST00000293590	human	ensembl	74_37	-1	known	missense	c.2402	p.S801F	1.000	pfam_FH2_Formin,smart_FH2_Formin	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FMNL3	HGNC	ENSG00000161791	tier1	-	-	32	0	0.00	62	22	26.19	62	0	0.00	132	45	25.14
ZFP57	0	genome.wustl.edu	37	6	29641137	29641137	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	6	29641137	29641137	G	A	SNP	ZFP57	ENST00000488757	human	ensembl	74_37	-1	known	missense	c.751	p.R251C	0.825	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP57	HGNC	ENSG00000204644	tier1	-	-	60	0	0.00	61	22	26.51	94	0	0.00	102	20	16.39
ARMCX4	0	genome.wustl.edu	37	X	100746403	100746403	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	X	100746403	100746403	G	A	SNP	ARMCX4	ENST00000423738	human	ensembl	74_37	+1	putative	missense	c.2827	p.G943S	0.005	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold,pfscan_Armadillo	-	no_errors	ARMCX4	HGNC	ENSG00000196440	tier1	-	-	36	0	0.00	60	33	35.48	91	0	0.00	78	49	38.58
CEL	0	genome.wustl.edu	37	9	135941960	135941960	+	Silent	SNP	G	G	A			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	9	135941960	135941960	G	A	SNP	CEL	ENST00000372080	human	ensembl	74_37	+1	known	silent	c.591	p.V197	1.000	pfam_CarbesteraseB,pfam_AB_hydrolase_3	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CEL	HGNC	ENSG00000170835	tier1	-	-	33	0	0.00	42	5	10.64	91	0	0.00	95	17	15.18
SLC18A2	0	genome.wustl.edu	37	10	119014856	119014856	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	10	119014856	119014856	G	A	SNP	SLC18A2	ENST00000298472	human	ensembl	74_37	+1	known	missense	c.769	p.A257T	0.992	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC18A2	HGNC	ENSG00000165646	tier1	rs201547103	-	55	0	0.00	46	10	17.54	75	0	0.00	28	4	12.50
MAN1A1	0	genome.wustl.edu	37	6	119514953	119514953	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	6	119514953	119514953	C	T	SNP	MAN1A1	ENST00000368468	human	ensembl	74_37	-1	known	missense	c.1315	p.D439N	1.000	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	MAN1A1	HGNC	ENSG00000111885	tier1	-	-	45	0	0.00	246	90	26.79	118	0	0.00	412	127	23.56
ERBB3	0	genome.wustl.edu	37	12	56480358	56480358	+	Silent	SNP	T	T	G			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	12	56480358	56480358	T	G	SNP	ERBB3	ENST00000267101	human	ensembl	74_37	+1	known	silent	c.465	p.L155	0.680	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_EGF_rcpt_L	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Furin-like_Cys-rich_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB3	HGNC	ENSG00000065361	tier1	-	-	49	0	0.00	126	60	32.26	84	0	0.00	93	46	33.09
TBC1D5	0	genome.wustl.edu	37	3	17226625	17226625	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	3	17226625	17226625	C	T	SNP	TBC1D5	ENST00000253692	human	ensembl	74_37	-1	known	missense	c.1828	p.A610T	1.000	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D5	HGNC	ENSG00000131374	tier1	-	-	87	0	0.00	80	23	22.33	126	0	0.00	87	18	17.14
TRRAP	0	genome.wustl.edu	37	7	98592415	98592415	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	7	98592415	98592415	C	T	SNP	TRRAP	ENST00000359863	human	ensembl	74_37	+1	known	missense	c.10211	p.A3404V	1.000	NULL	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	TRRAP	HGNC	ENSG00000196367	tier1	-	-	36	0	0.00	31	5	13.89	23	0	0.00	14	12	46.15
SETD1B	0	genome.wustl.edu	37	12	122247833	122247833	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	12	122247833	122247833	C	T	SNP	SETD1B	ENST00000267197	human	ensembl	74_37	+1	known	missense	c.982	p.H328Y	1.000	NULL	pfam_COMPASS_Set1_N-SET,pfam_SET_dom,pfam_RRM_dom,smart_RRM_dom,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_RRM_dom	-	no_errors	SETD1B	HGNC	ENSG00000139718	tier1	-	-	35	0	0.00	129	122	48.61	65	0	0.00	298	254	46.01
ODF3B	0	genome.wustl.edu	37	22	50968892	50968892	+	Silent	SNP	C	C	A			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	22	50968892	50968892	C	A	SNP	ODF3B	ENST00000405135	human	ensembl	74_37	-1	putative	silent	c.825	p.A275	0.018	NULL	NULL	-	no_errors	ODF3B	HGNC	ENSG00000177989	tier1	-	-	63	0	0.00	43	19	30.65	48	0	0.00	28	9	24.32
GOLGA3	0	genome.wustl.edu	37	12	133384827	133384827	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	12	133384827	133384827	G	C	SNP	GOLGA3	ENST00000204726	human	ensembl	74_37	-1	known	missense	c.828	p.N276K	0.880	NULL	superfamily_Prefoldin	-	no_errors	GOLGA3	HGNC	ENSG00000090615	tier1	-	-	14	0	0.00	27	22	44.90	84	0	0.00	82	63	43.45
STXBP1	0	genome.wustl.edu	37	9	130438121	130438121	+	Silent	SNP	C	C	T			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	9	130438121	130438121	C	T	SNP	STXBP1	ENST00000373299	human	ensembl	74_37	+1	known	silent	c.1149	p.I383	1.000	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	STXBP1	HGNC	ENSG00000136854	tier1	-	-	88	0	0.00	69	19	21.59	111	0	0.00	87	47	35.07
GAREML	0	genome.wustl.edu	37	2	26410287	26410287	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	2	26410287	26410287	G	A	SNP	GAREML	ENST00000401533	human	ensembl	74_37	+1	known	missense	c.1786	p.A596T	0.002	NULL	superfamily_SAM/pointed	-	no_errors	GAREML	HGNC	ENSG00000157833	tier1	-	-	85	0	0.00	67	14	17.07	59	0	0.00	39	12	23.53
APC5	0	genome.wustl.edu	37	12	121747544	121747544	+	Silent	SNP	C	C	T			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	12	121747544	121747544	C	T	SNP	APC5	ENST00000261819	human	ensembl	74_37	-1	known	silent	c.2016	p.V672	1.000	NULL	smart_TPR_repeat	-	no_errors	APC5	HGNC	ENSG00000089053	tier1	-	-	44	0	0.00	81	172	67.98	28	0	0.00	71	185	71.98
MYO5C	0	genome.wustl.edu	37	15	52571803	52571803	+	Silent	SNP	C	C	T			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	15	52571803	52571803	C	T	SNP	MYO5C	ENST00000261839	human	ensembl	74_37	-1	known	silent	c.207	p.E69	1.000	superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5C	HGNC	ENSG00000128833	tier1	-	-	40	0	0.00	35	4	10.26	63	0	0.00	37	11	22.92
SYK	0	genome.wustl.edu	37	9	93606231	93606231	+	Silent	SNP	C	C	T			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	9	93606231	93606231	C	T	SNP	SYK	ENST00000375746	human	ensembl	74_37	+1	known	silent	c.51	p.F17	0.814	pfam_SH2,smart_SH2,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,pfscan_SH2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,superfamily_Kinase-like_dom,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,pfscan_SH2,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	SYK	HGNC	ENSG00000165025	tier1	rs200626943	-	34	0	0.00	30	7	18.92	66	0	0.00	59	7	10.61
CEL	0	genome.wustl.edu	37	9	135944447	135944447	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	9	135944447	135944447	G	A	SNP	CEL	ENST00000372080	human	ensembl	74_37	+1	known	missense	c.1096	p.D366N	0.998	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CEL	HGNC	ENSG00000170835	tier1	-	-	31	0	0.00	46	8	14.81	66	0	0.00	64	11	14.67
POTEA	0	genome.wustl.edu	37	8	43159855	43159855	+	R	SNP	C	C	G			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	8	43159855	43159855	C	G	SNP	POTEA	ENST00000522175	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	POTEA	HGNC	ENSG00000188877	tier1	-	-	70	0	0.00	202	166	44.99	34	0	0.00	22	7	24.14
USP48	0	genome.wustl.edu	37	1	22073626	22073626	+	Nonsense_Mutation	SNP	T	T	A			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	1	22073626	22073626	T	A	SNP	USP48	ENST00000308271	human	ensembl	74_37	-1	known	nonsense	c.925	p.K309*	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67,pfscan_Ubiquitin_supergroup	-	no_errors	USP48	HGNC	ENSG00000090686	tier1	-	-	42	0	0.00	29	5	14.71	108	0	0.00	67	20	22.99
SETD1B	0	genome.wustl.edu	37	12	122247621	122247621	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	12	122247621	122247621	C	T	SNP	SETD1B	ENST00000267197	human	ensembl	74_37	+1	known	missense	c.770	p.A257V	1.000	NULL	pfam_COMPASS_Set1_N-SET,pfam_SET_dom,pfam_RRM_dom,smart_RRM_dom,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_RRM_dom	-	no_errors	SETD1B	HGNC	ENSG00000139718	tier1	-	-	78	0	0.00	410	325	44.04	84	0	0.00	372	343	47.97
IVL	0	genome.wustl.edu	37	1	152883175	152883175	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	1	152883175	152883175	A	T	SNP	IVL	ENST00000368764	human	ensembl	74_37	+1	known	missense	c.902	p.K301M	0.017	pfam_Involucrin_rpt	pfam_Involucrin_N,pfam_Involucrin_rpt	-	no_errors	IVL	HGNC	ENSG00000163207	tier1	-	-	55	0	0.00	71	29	29.00	16	0	0.00	17	9	34.62
SLC6A18	0	genome.wustl.edu	37	5	1238154	1238154	+	Silent	SNP	C	C	T			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	5	1238154	1238154	C	T	SNP	SLC6A18	ENST00000324642	human	ensembl	74_37	+1	known	silent	c.711	p.L237	0.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_orphan	-	no_errors	SLC6A18	HGNC	ENSG00000164363	tier1	-	-	58	0	0.00	139	162	53.82	104	0	0.00	166	147	46.96
C9orf96	0	genome.wustl.edu	37	9	136270458	136270458	+	Silent	SNP	G	G	A			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	9	136270458	136270458	G	A	SNP	C9orf96	ENST00000371957	human	ensembl	74_37	+1	known	silent	c.1956	p.V652	0.998	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	C9orf96	HGNC	ENSG00000198870	tier1	-	-	19	0	0.00	17	6	26.09	41	0	0.00	29	5	14.71
CMSS1	0	genome.wustl.edu	37	3	99891167	99891167	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	3	99891167	99891167	C	T	SNP	CMSS1	ENST00000421999	human	ensembl	74_37	+1	known	missense	c.587	p.A196V	0.993	pfam_D/R_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase	pfam_D/R_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase	-	no_errors	CMSS1	HGNC	ENSG00000184220	tier1	-	-	32	0	0.00	61	10	14.08	69	0	0.00	52	7	11.86
PDE8B	0	genome.wustl.edu	37	5	76709035	76709035	+	Silent	SNP	C	C	T			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	5	76709035	76709035	C	T	SNP	PDE8B	ENST00000264917	human	ensembl	74_37	+1	known	silent	c.1812	p.I604	0.456	NULL	pfam_PDEase_catalytic_dom,pfam_PDEase_PDE8,pfam_Sig_transdc_resp-reg_receiver,pfam_PAS_fold,pfam_PAS_4,pfam_PAS_fold_3,superfamily_PAS,superfamily_CheY-like_superfamily,smart_PAS,smart_HD/PDEase_dom,pfscan_PAS,prints_PDEase,tigrfam_PAS	-	no_errors	PDE8B	HGNC	ENSG00000113231	tier1	-	-	55	0	0.00	73	20	21.51	118	0	0.00	90	26	22.41
STXBP1	0	genome.wustl.edu	37	9	130438152	130438152	+	Silent	SNP	C	C	T			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	9	130438152	130438152	C	T	SNP	STXBP1	ENST00000373299	human	ensembl	74_37	+1	known	silent	c.1180	p.L394	1.000	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	STXBP1	HGNC	ENSG00000136854	tier1	-	-	80	0	0.00	64	17	20.99	109	0	0.00	100	52	34.21
PIK3R4	0	genome.wustl.edu	37	3	130398323	130398323	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	3	130398323	130398323	G	T	SNP	PIK3R4	ENST00000356763	human	ensembl	74_37	-1	known	missense	c.3913	p.Q1305K	1.000	superfamily_WD40_repeat_dom	pfam_Prot_kinase_dom,pfam_WD40_repeat,pfam_HEAT,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_WD40_repeat,pfscan_HEAT_type_2,pfscan_Prot_kinase_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	PIK3R4	HGNC	ENSG00000196455	tier1	-	-	11	0	0.00	15	5	25.00	77	0	0.00	78	31	28.44
FOXI1	0	genome.wustl.edu	37	5	169533511	169533511	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	5	169533511	169533511	G	C	SNP	FOXI1	ENST00000306268	human	ensembl	74_37	+1	known	missense	c.550	p.V184L	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXI1	HGNC	ENSG00000168269	tier1	-	-	73	0	0.00	136	29	17.58	53	0	0.00	31	14	31.11
WDFY4	0	genome.wustl.edu	37	10	50098739	50098743	+	Frame_Shift_Del	DEL	GTGAT	GTGAT	-			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	GTGAT	GTGAT	GTGAT	-	GTGAT	GTGAT	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	10	50098739	50098743	GTGAT	-	DEL	WDFY4	ENST00000325239	human	ensembl	74_37	+1	known	frame_shift_del	c.7283_7287	p.D2429fs	0.966:0.949:0.993:0.993:0.972	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY4	HGNC	ENSG00000128815	tier1			92	0	0.00	85	18	17.48	92	0	0.00	85	18	17.48
LPCAT2	0	genome.wustl.edu	37	16	55584939	55584939	+	Frame_Shift_Del	DEL	A	A	-			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	16	55584939	55584939	A	-	DEL	LPCAT2	ENST00000262134	human	ensembl	74_37	+1	known	frame_shift_del	c.1140	p.I381fs	1.000	NULL	pfam_EF_hand_dom,pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	-	no_errors	LPCAT2	HGNC	ENSG00000087253	tier1			72	0	0.00	100	15	13.04	105	0	0.00	84	18	17.65
TTC37	0	genome.wustl.edu	37	5	94803639	94803640	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	AG	AG	AG	-	AG	AG	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	5	94803639	94803640	AG	-	DEL	TTC37	ENST00000358746	human	ensembl	74_37	-1	known	frame_shift_del	c.4551_4550	p.S1517fs	1.000:1.000	NULL	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC37	HGNC	ENSG00000198677	tier1			33	0	0.00	30	5	14.29	123	0	0.00	61	15	19.74
METTL1	0	genome.wustl.edu	37	12	58163564	58163564	+	Nonsense_Mutation	SNP	G	G	C			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	12	58163564	58163564	G	C	SNP	METTL1	ENST00000324871	human	ensembl	74_37	-1	known	nonsense	c.450	p.Y150*	0.123	pfam_tR_(Gua-N-7)_MeTrfase,tigrfam_tR_(Gua-N-7)_MeTrfase	pfam_tR_(Gua-N-7)_MeTrfase,tigrfam_tR_(Gua-N-7)_MeTrfase	-	no_errors	METTL1	HGNC	ENSG00000037897	tier1	-	-	50	0	0.00	267	49	15.51	121	0	0.00	589	53	8.24
KRT10	0	genome.wustl.edu	37	17	38978609	38978609	+	Silent	SNP	A	A	G			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	17	38978609	38978609	A	G	SNP	KRT10	ENST00000269576	human	ensembl	74_37	-1	known	silent	c.229	p.L77	0.000	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT10	HGNC	ENSG00000186395	tier1	-	-	60	0	0.00	63	13	17.11	70	0	0.00	76	8	9.41
PCDHGA4	0	genome.wustl.edu	37	5	140735522	140735522	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	5	140735522	140735522	G	A	SNP	PCDHGA4	ENST00000571252	human	ensembl	74_37	+1	known	missense	c.755	p.R252H	0.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA4	HGNC	ENSG00000262576	tier1	-	-	32	0	0.00	26	5	16.13	121	1	0.82	78	8	9.30
PRPF40B	0	genome.wustl.edu	37	12	50036712	50036712	+	Splice_Site	SNP	G	G	A			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	12	50036712	50036712	G	A	SNP	PRPF40B	ENST00000548825	human	ensembl	74_37	+1	known	splice_site	c.2119-1	e22-1	1.000	-	-	-	no_errors	PRPF40B	HGNC	ENSG00000110844	tier1	-	-	36	0	0.00	103	11	9.65	102	0	0.00	329	13	3.79
METTL1	0	genome.wustl.edu	37	12	58163566	58163566	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	12	58163566	58163566	A	G	SNP	METTL1	ENST00000324871	human	ensembl	74_37	-1	known	missense	c.448	p.Y150H	0.286	pfam_tR_(Gua-N-7)_MeTrfase,tigrfam_tR_(Gua-N-7)_MeTrfase	pfam_tR_(Gua-N-7)_MeTrfase,tigrfam_tR_(Gua-N-7)_MeTrfase	-	no_errors	METTL1	HGNC	ENSG00000037897	tier1	-	-	54	0	0.00	273	44	13.88	117	0	0.00	576	49	7.83
CCDC53	0	genome.wustl.edu	37	12	102419810	102419810	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	12	102419810	102419810	G	A	SNP	CCDC53	ENST00000240079	human	ensembl	74_37	-1	known	missense	c.442	p.P148S	1.000	pfam_WASH_CCDC53	pfam_WASH_CCDC53	-	no_errors	CCDC53	HGNC	ENSG00000120860	tier1	-	-	44	0	0.00	676	76	10.11	52	0	0.00	529	47	8.16
C9orf96	0	genome.wustl.edu	37	9	136269043	136269043	+	Splice_Site	SNP	G	G	C			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	9	136269043	136269043	G	C	SNP	C9orf96	ENST00000371957	human	ensembl	74_37	+1	known	splice_site	c.1604-1	e16-1	1.000	-	-	-	no_errors	C9orf96	HGNC	ENSG00000198870	tier1	-	-	51	0	0.00	34	4	10.53	9	0	0.00	3	1	25.00
DNM1P47	0	genome.wustl.edu	37	15	102299838	102299838	+	R	SNP	G	G	C			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	15	102299838	102299838	G	C	SNP	DNM1P47	ENST00000561463	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.965	-	-	-	no_errors	DNM1P47	HGNC	ENSG00000259660	tier1	-	-	31	0	0.00	64	7	9.86	0	0	0.00	0	0	0.00
MT-CO2	0	genome.wustl.edu	37	MT	7850	7850	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	MT	7850	7850	G	A	SNP	MT-CO2	ENST00000361739	human	ensembl	74_37	+1	known	missense	c.265	p.E89K	NULL	superfamily_Cyt_c_oxidase_su2_TM_dom,pfscan_Cyt_c_oxidase_su2_TM_dom,tigrfam_Cyt_c_oxidase_su2	pfam_Cyt_c_oxidase_su2_C,pfam_Cyt_c_oxidase_su2_TM_dom,superfamily_Cupredoxin,superfamily_Cyt_c_oxidase_su2_TM_dom,pfscan_Cyt_c_oxidase_su2_TM_dom,pfscan_Cyt_c_oxidase_su2_C,tigrfam_Cyt_c_oxidase_su2	-	no_errors	MT-CO2	HGNC	ENSG00000198712	tier1	-	-	319	0	0.00	833	97	10.43	0	0	0.00	0	0	0.00
MT-ND5	0	genome.wustl.edu	37	MT	13471	13471	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	MT	13471	13471	G	A	SNP	MT-ND5	ENST00000361567	human	ensembl	74_37	+1	known	missense	c.1135	p.A379T	NULL	pfam_DH_UbQ/plastoQ_OxRdtase,tigrfam_DHpl_OxRdtase_5	pfam_DH_UbQ/plastoQ_OxRdtase,pfam_DH_DH_su5_C,pfam_DH_UbQ_OxRdtase_chain5/L_N,tigrfam_DHpl_OxRdtase_5	-	no_errors	MT-ND5	HGNC	ENSG00000198786	tier1	-	-	25	0	0.00	45	9	16.67	0	0	0.00	0	0	0.00
KCNH3	0	genome.wustl.edu	37	12	49948143	49948143	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	12	49948143	49948143	G	A	SNP	KCNH3	ENST00000257981	human	ensembl	74_37	+1	known	missense	c.1942	p.E648K	1.000	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_ERG	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_cNMP-bd_dom,pfam_PAS_4,pfam_PAS_fold,pfam_PAS_fold_3,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH3	HGNC	ENSG00000135519	tier1	-	-	73	0	0.00	149	15	9.15	25	0	0.00	66	3	4.35
KCNH3	0	genome.wustl.edu	37	12	49948321	49948321	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	12	49948321	49948321	G	A	SNP	KCNH3	ENST00000257981	human	ensembl	74_37	+1	known	missense	c.2120	p.G707E	1.000	NULL	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_cNMP-bd_dom,pfam_PAS_4,pfam_PAS_fold,pfam_PAS_fold_3,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH3	HGNC	ENSG00000135519	tier1	-	-	44	0	0.00	97	9	8.49	29	0	0.00	63	2	3.08
KRT16	0	genome.wustl.edu	37	17	39766252	39766252	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	17	39766252	39766252	G	A	SNP	KRT16	ENST00000301653	human	ensembl	74_37	-1	known	missense	c.1357	p.R453C	0.003	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT16	HGNC	ENSG00000186832	tier1	-	-	81	0	0.00	93	23	19.83	16	0	0.00	22	2	8.33
KCNH3	0	genome.wustl.edu	37	12	49948322	49948322	+	Silent	SNP	G	G	A			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	12	49948322	49948322	G	A	SNP	KCNH3	ENST00000257981	human	ensembl	74_37	+1	known	silent	c.2121	p.G707	0.014	NULL	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_cNMP-bd_dom,pfam_PAS_4,pfam_PAS_fold,pfam_PAS_fold_3,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH3	HGNC	ENSG00000135519	tier1	-	-	44	0	0.00	96	9	8.57	28	0	0.00	63	2	3.08
KCNH3	0	genome.wustl.edu	37	12	49948182	49948182	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	12	49948182	49948182	G	A	SNP	KCNH3	ENST00000257981	human	ensembl	74_37	+1	known	missense	c.1981	p.D661N	0.478	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_cNMP-bd_dom,pfam_PAS_4,pfam_PAS_fold,pfam_PAS_fold_3,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH3	HGNC	ENSG00000135519	tier1	-	-	69	0	0.00	147	19	11.45	30	0	0.00	73	3	3.95
