Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
SAR1A	0	genome.wustl.edu	37	10	71921382	71921382	+	Silent	SNP	T	T	C			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	10	71921382	71921382	T	C	SNP	SAR1A	ENST00000373238	human	ensembl	74_37	-1	known	silent	c.171	p.L57	0.893	pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_Small_GTPase,pfam_Gprotein_alpha_su,pfam_MIRO-like,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,prints_Small_GTPase_ARF/SAR,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_Small_GTPase,pfam_Gprotein_alpha_su,pfam_MIRO-like,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,prints_Small_GTPase_ARF/SAR,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	SAR1A	HGNC	ENSG00000079332	tier1	-	-	55	0	0.00	26	9	25.71	79	0	0.00	49	27	35.06
JAK1	0	genome.wustl.edu	37	1	65305469	65305469	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	1	65305469	65305469	C	A	SNP	JAK1	ENST00000342505	human	ensembl	74_37	-1	known	missense	c.2659	p.G887W	1.000	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak1,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_SH2,pfscan_Prot_kinase_dom	-	no_errors	JAK1	HGNC	ENSG00000162434	tier1	-	-	33	0	0.00	7	16	69.57	111	1	0.89	14	57	80.28
KRT77	0	genome.wustl.edu	37	12	53086631	53086631	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	12	53086631	53086631	C	T	SNP	KRT77	ENST00000341809	human	ensembl	74_37	-1	known	missense	c.1114	p.G372R	0.999	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT77	HGNC	ENSG00000189182	tier1	-	-	34	0	0.00	22	15	40.54	57	0	0.00	27	24	47.06
EGF	0	genome.wustl.edu	37	4	110897337	110897337	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	4	110897337	110897337	G	C	SNP	EGF	ENST00000265171	human	ensembl	74_37	+1	known	missense	c.1999	p.E667Q	1.000	pirsf_Pro-epidermal_GF,pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pirsf_Pro-epidermal_GF,pfam_LDLR_classB_rpt,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt	-	no_errors	EGF	HGNC	ENSG00000138798	tier1	-	-	54	0	0.00	48	14	22.58	143	0	0.00	143	60	29.56
TET2	0	genome.wustl.edu	37	4	106196793	106196793	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	4	106196793	106196793	G	A	SNP	TET2	ENST00000380013	human	ensembl	74_37	+1	known	missense	c.5126	p.C1709Y	1.000	NULL	NULL	-	no_errors	TET2	HGNC	ENSG00000168769	tier1	-	-	35	0	0.00	25	18	41.86	153	0	0.00	140	29	17.16
PDGFC	0	genome.wustl.edu	37	4	157892061	157892061	+	R	SNP	T	T	A			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	4	157892061	157892061	T	A	SNP	PDGFC	ENST00000513664	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PDGFC	HGNC	ENSG00000145431	tier1	-	-	28	0	0.00	13	7	35.00	47	0	0.00	13	8	38.10
TET2	0	genome.wustl.edu	37	4	106196802	106196802	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	4	106196802	106196802	G	A	SNP	TET2	ENST00000380013	human	ensembl	74_37	+1	known	missense	c.5135	p.R1712K	0.993	NULL	NULL	-	no_errors	TET2	HGNC	ENSG00000168769	tier1	-	-	35	0	0.00	24	16	40.00	147	1	0.67	139	31	18.13
PRRC2A	0	genome.wustl.edu	37	6	31604303	31604303	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	6	31604303	31604303	C	T	SNP	PRRC2A	ENST00000376007	human	ensembl	74_37	+1	known	missense	c.5852	p.P1951L	1.000	NULL	pfam_BAT2_N	-	no_errors	PRRC2A	HGNC	ENSG00000204469	tier1	-	-	73	0	0.00	28	16	36.36	87	0	0.00	55	24	30.38
ANPEP	0	genome.wustl.edu	37	15	90349396	90349396	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	15	90349396	90349396	C	T	SNP	ANPEP	ENST00000300060	human	ensembl	74_37	-1	known	missense	c.419	p.R140H	0.042	pfam_Peptidase_M1_N	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ANPEP	HGNC	ENSG00000166825	tier1	rs145360414	-	38	0	0.00	25	12	32.43	25	0	0.00	10	11	52.38
VSIG10L	0	genome.wustl.edu	37	19	51845231	51845231	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	19	51845231	51845231	G	A	SNP	VSIG10L	ENST00000335624	human	ensembl	74_37	-1	novel	missense	c.71	p.A24V	0.015	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	VSIG10L	HGNC	ENSG00000186806	tier1	-	-	21	0	0.00	13	12	48.00	88	0	0.00	42	29	40.85
PLBD1	0	genome.wustl.edu	37	12	14656854	14656854	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	12	14656854	14656854	G	T	SNP	PLBD1	ENST00000240617	human	ensembl	74_37	-1	known	missense	c.1514	p.S505Y	1.000	pfam_PLipase_B-like	pfam_PLipase_B-like	-	no_errors	PLBD1	HGNC	ENSG00000121316	tier1	-	-	35	0	0.00	40	10	20.00	118	0	0.00	88	19	17.76
EGF	0	genome.wustl.edu	37	4	110897208	110897208	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	4	110897208	110897208	G	A	SNP	EGF	ENST00000265171	human	ensembl	74_37	+1	known	missense	c.1870	p.E624K	1.000	pirsf_Pro-epidermal_GF,pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pirsf_Pro-epidermal_GF,pfam_LDLR_classB_rpt,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt	-	no_errors	EGF	HGNC	ENSG00000138798	tier1	-	-	74	0	0.00	59	28	32.18	141	1	0.70	162	57	25.91
FSIP2	0	genome.wustl.edu	37	2	186671383	186671383	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	2	186671383	186671383	G	A	SNP	FSIP2	ENST00000343098	human	ensembl	74_37	+1	known	missense	c.17617	p.A5873T	0.143	NULL	NULL	-	no_errors	FSIP2	HGNC	ENSG00000188738	tier1	-	-	74	0	0.00	50	22	30.56	134	0	0.00	90	57	38.78
CRX	0	genome.wustl.edu	37	19	48339521	48339521	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	19	48339521	48339521	G	A	SNP	CRX	ENST00000221996	human	ensembl	74_37	+1	known	missense	c.122	p.R41Q	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,pfam_Otx_TF_C,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	CRX	HGNC	ENSG00000105392	tier1	rs61748436	-	38	0	0.00	26	6	18.75	46	0	0.00	21	12	36.36
OCSTAMP	0	genome.wustl.edu	37	20	45170491	45170491	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	20	45170491	45170491	G	A	SNP	OCSTAMP	ENST00000279028	human	ensembl	74_37	-1	known	missense	c.1123	p.H375Y	0.002	pfam_DC_STAMP-like	pfam_DC_STAMP-like	-	no_errors	OCSTAMP	HGNC	ENSG00000149635	tier1	-	-	23	0	0.00	20	4	16.67	43	0	0.00	38	7	15.56
FAM221A	0	genome.wustl.edu	37	7	23737906	23737906	+	Missense_Mutation	SNP	A	A	C			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	7	23737906	23737906	A	C	SNP	FAM221A	ENST00000344962	human	ensembl	74_37	+1	known	missense	c.733	p.T245P	0.092	NULL	NULL	-	no_errors	FAM221A	HGNC	ENSG00000188732	tier1	-	-	40	0	0.00	35	17	32.69	120	0	0.00	65	37	36.27
TET2	0	genome.wustl.edu	37	4	106197126	106197126	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	4	106197126	106197126	G	C	SNP	TET2	ENST00000380013	human	ensembl	74_37	+1	known	missense	c.5459	p.S1820T	0.000	NULL	NULL	-	no_errors	TET2	HGNC	ENSG00000168769	tier1	-	-	13	0	0.00	15	9	36.00	114	0	0.00	81	42	33.87
MAOA	0	genome.wustl.edu	37	X	43602982	43602982	+	R	SNP	C	C	T			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	X	43602982	43602982	C	T	SNP	MAOA	ENST00000490604	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	MAOA	HGNC	ENSG00000189221	tier1	-	-	14	0	0.00	6	5	45.45	82	0	0.00	62	35	36.08
EGF	0	genome.wustl.edu	37	4	110897311	110897311	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	4	110897311	110897311	G	A	SNP	EGF	ENST00000265171	human	ensembl	74_37	+1	known	nonsense	c.1973	p.W658*	1.000	pirsf_Pro-epidermal_GF,pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pirsf_Pro-epidermal_GF,pfam_LDLR_classB_rpt,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt	-	no_errors	EGF	HGNC	ENSG00000138798	tier1	-	-	63	0	0.00	57	16	21.92	146	0	0.00	150	62	29.25
ZBED4	0	genome.wustl.edu	37	22	50279664	50279664	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	22	50279664	50279664	A	G	SNP	ZBED4	ENST00000216268	human	ensembl	74_37	+1	known	missense	c.2354	p.Q785R	0.998	superfamily_RNaseH-like_dom	pfam_Znf_BED_prd,pfam_HATC_dom_C,superfamily_RNaseH-like_dom,smart_Znf_BED_prd,pfscan_Znf_BED_prd	-	no_errors	ZBED4	HGNC	ENSG00000100426	tier1	-	-	28	0	0.00	24	12	33.33	35	0	0.00	15	8	34.78
TDRD12	0	genome.wustl.edu	37	19	33281462	33281462	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	19	33281462	33281462	C	T	SNP	TDRD12	ENST00000444215	human	ensembl	74_37	+1	known	missense	c.1147	p.P383S	1.000	NULL	pfam_Tudor,pfam_D/R_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase	-	no_errors	TDRD12	HGNC	ENSG00000173809	tier1	-	-	16	0	0.00	13	6	31.58	113	0	0.00	69	34	33.01
MET	0	genome.wustl.edu	37	7	116340270	116340270	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	7	116340270	116340270	G	A	SNP	MET	ENST00000318493	human	ensembl	74_37	+1	known	missense	c.1132	p.V378I	1.000	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semap_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Kinase-like_dom,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Semap_dom,pfscan_Prot_kinase_dom	-	no_errors	MET	HGNC	ENSG00000105976	tier1	-	-	31	0	0.00	28	14	33.33	101	0	0.00	95	12	11.11
EGF	0	genome.wustl.edu	37	4	110897298	110897298	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	4	110897298	110897298	G	A	SNP	EGF	ENST00000265171	human	ensembl	74_37	+1	known	missense	c.1960	p.D654N	0.992	pirsf_Pro-epidermal_GF,pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pirsf_Pro-epidermal_GF,pfam_LDLR_classB_rpt,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt	-	no_errors	EGF	HGNC	ENSG00000138798	tier1	-	-	65	0	0.00	55	18	24.66	146	0	0.00	154	62	28.70
MDGA2	0	genome.wustl.edu	37	14	47324254	47324254	+	Silent	SNP	A	A	C			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	14	47324254	47324254	A	C	SNP	MDGA2	ENST00000439988	human	ensembl	74_37	-1	known	silent	c.2856	p.V952	0.999	pfam_MAM_dom,superfamily_ConA-like_lec_gl_sf,smart_MAM_dom,pfscan_MAM_dom	pfam_Ig_I-set,pfam_MAM_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_MAM_dom,pfscan_MAM_dom,pfscan_Ig-like_dom	-	no_errors	MDGA2	Uniprot_gn	ENSG00000272781	tier1	-	-	40	0	0.00	37	22	36.67	108	0	0.00	55	54	49.54
DCAF8L2	0	genome.wustl.edu	37	X	27766328	27766328	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	X	27766328	27766328	C	T	SNP	DCAF8L2	ENST00000451261	human	ensembl	74_37	+1	known	missense	c.1316	p.A439V	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF8L2	HGNC	ENSG00000189186	tier1	-	-	44	0	0.00	50	10	16.67	66	0	0.00	45	23	33.82
FAT2	0	genome.wustl.edu	37	5	150920164	150920164	+	Silent	SNP	G	G	C			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	5	150920164	150920164	G	C	SNP	FAT2	ENST00000261800	human	ensembl	74_37	-1	known	silent	c.9003	p.V3001	0.860	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570	tier1	-	-	43	0	0.00	30	7	18.92	82	1	1.18	69	14	16.87
RHAG	0	genome.wustl.edu	37	6	49604429	49604429	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	6	49604429	49604429	G	A	SNP	RHAG	ENST00000371175	human	ensembl	74_37	-1	known	missense	c.97	p.L33F	0.000	pfam_NH4_transpt_AmtB-like_dom	pfam_NH4_transpt_AmtB-like_dom,superfamily_NH4_transpt_AmtB-like_dom,prints_RhesusRHD	-	no_errors	RHAG	HGNC	ENSG00000112077	tier1	-	-	40	0	0.00	21	17	44.74	121	0	0.00	35	48	57.83
SMCR5	0	genome.wustl.edu	37	17	17682037	17682037	+	R	SNP	T	T	C			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	17	17682037	17682037	T	C	SNP	SMCR5	ENST00000543475	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SMCR5	HGNC	ENSG00000226746	tier1	-	-	64	0	0.00	24	7	22.58	97	0	0.00	53	25	32.05
OR1L6	0	genome.wustl.edu	37	9	125512914	125512914	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	9	125512914	125512914	C	T	SNP	OR1L6	ENST00000373684	human	ensembl	74_37	+1	known	missense	c.896	p.P299L	0.589	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1L6	HGNC	ENSG00000171459	tier1	-	-	59	0	0.00	63	22	25.88	80	0	0.00	85	27	24.11
EFCAB4B	0	genome.wustl.edu	37	12	3768815	3768815	+	Missense_Mutation	SNP	A	A	C			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	12	3768815	3768815	A	C	SNP	EFCAB4B	ENST00000440314	human	ensembl	74_37	-1	known	missense	c.677	p.I226S	0.992	NULL	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_EF_hand_dom,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,pfscan_EF_hand_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	EFCAB4B	HGNC	ENSG00000130038	tier1	-	-	39	0	0.00	18	24	57.14	83	0	0.00	28	24	46.15
AMER1	0	genome.wustl.edu	37	X	63410105	63410105	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	X	63410105	63410105	G	A	SNP	AMER1	ENST00000330258	human	ensembl	74_37	-1	known	missense	c.3062	p.A1021V	0.852	NULL	pfam_Uncharacterised_FAM123	-	no_errors	AMER1	HGNC	ENSG00000184675	tier1	-	-	75	0	0.00	8	30	78.95	132	0	0.00	8	41	83.67
TMEM14B	0	genome.wustl.edu	37	6	10756863	10756864	+	R	INS	-	-	A			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	6	10756863	10756864	-	A	INS	TMEM14B	ENST00000486421	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.029:0.005	-	-	-	no_errors	TMEM14B	HGNC	ENSG00000137210	tier1			24	0	0.00	13	4	23.53	48	0	0.00	46	5	9.80
KRT10	0	genome.wustl.edu	37	17	38975103	38975104	+	In_Frame_Ins	INS	-	-	GCT			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	17	38975103	38975104	-	GCT	INS	KRT10	ENST00000269576	human	ensembl	74_37	-1	known	in_frame_ins	c.1684_1683	p.563in_frame_insS	0.124:0.323	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT10	HGNC	ENSG00000186395	tier1			29	0	0.00	22	4	15.38	8	0	0.00	9	0	0.00
C22orf26	0	genome.wustl.edu	37	22	46449708	46449708	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	22	46449708	46449708	G	C	SNP	C22orf26	ENST00000333761	human	ensembl	74_37	-1	known	missense	c.266	p.A89G	1.000	NULL	NULL	-	no_errors	C22orf26	HGNC	ENSG00000182257	tier1	-	-	8	0	0.00	4	8	66.67	0	0	0.00	0	1	100.00
HCN2	0	genome.wustl.edu	37	19	616057	616057	+	Silent	SNP	G	G	C			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	19	616057	616057	G	C	SNP	HCN2	ENST00000251287	human	ensembl	74_37	+1	known	silent	c.2253	p.A751	0.061	NULL	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	HCN2	HGNC	ENSG00000099822	tier1	rs201222040	-	8	0	0.00	7	7	50.00	0	0	0.00	0	0	0.00
SLC39A3	0	genome.wustl.edu	37	19	2737421	2737421	+	R	DEL	T	T	-			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	19	2737421	2737421	T	-	DEL	SLC39A3	ENST00000590875	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.018	-	-	-	no_errors	SLC39A3	HGNC	ENSG00000141873	tier1			16	0	0.00	15	5	25.00	13	0	0.00	30	2	6.25
