Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
FBN1	0	genome.wustl.edu	37	15	48780437	48780437	+	Silent	SNP	G	G	A			TCGA-DX-A3UF-01A-11D-A307-09	TCGA-DX-A3UF-10A-01D-A307-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	99ba1406-c89a-4509-927c-fc73304b5297	f6892671-6102-40e1-9d38-656a40b10c76	15	48780437	48780437	G	A	SNP	FBN1	ENST00000316623	human	ensembl	74_37	-1	known	silent	c.3210	p.D1070	1.000	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147	tier1	-	-	68	0	0.00	32	24	42.86	85	0	0.00	60	46	43.40
ADAM22	0	genome.wustl.edu	37	7	87797524	87797524	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A3UF-01A-11D-A307-09	TCGA-DX-A3UF-10A-01D-A307-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	99ba1406-c89a-4509-927c-fc73304b5297	f6892671-6102-40e1-9d38-656a40b10c76	7	87797524	87797524	T	C	SNP	ADAM22	ENST00000265727	human	ensembl	74_37	+1	known	missense	c.2264	p.I755T	0.986	NULL	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM22	HGNC	ENSG00000008277	tier1	-	-	75	0	0.00	31	18	36.00	124	0	0.00	103	72	41.14
ING2	0	genome.wustl.edu	37	4	184431587	184431587	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3UF-01A-11D-A307-09	TCGA-DX-A3UF-10A-01D-A307-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	99ba1406-c89a-4509-927c-fc73304b5297	f6892671-6102-40e1-9d38-656a40b10c76	4	184431587	184431587	G	A	SNP	ING2	ENST00000302327	human	ensembl	74_37	+1	known	missense	c.325	p.E109K	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	ING2	HGNC	ENSG00000168556	tier1	-	-	34	0	0.00	23	11	32.35	140	0	0.00	102	54	34.39
FDPS	0	genome.wustl.edu	37	1	155288023	155288023	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A3UF-01A-11D-A307-09	TCGA-DX-A3UF-10A-01D-A307-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	99ba1406-c89a-4509-927c-fc73304b5297	f6892671-6102-40e1-9d38-656a40b10c76	1	155288023	155288023	C	G	SNP	FDPS	ENST00000356657	human	ensembl	74_37	+1	known	missense	c.625	p.L209V	1.000	pfam_Polyprenyl_synt,superfamily_Terpenoid_synth	pfam_Polyprenyl_synt,superfamily_Terpenoid_synth	-	no_errors	FDPS	HGNC	ENSG00000160752	tier1	-	-	64	0	0.00	26	17	39.53	33	0	0.00	12	16	57.14
KDM3A	0	genome.wustl.edu	37	2	86693527	86693527	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3UF-01A-11D-A307-09	TCGA-DX-A3UF-10A-01D-A307-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	99ba1406-c89a-4509-927c-fc73304b5297	f6892671-6102-40e1-9d38-656a40b10c76	2	86693527	86693527	C	T	SNP	KDM3A	ENST00000312912	human	ensembl	74_37	+1	known	missense	c.1040	p.S347F	0.987	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM3A	HGNC	ENSG00000115548	tier1	-	-	96	0	0.00	31	54	63.53	86	0	0.00	57	83	58.87
NPAP1	0	genome.wustl.edu	37	15	24922764	24922764	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A3UF-01A-11D-A307-09	TCGA-DX-A3UF-10A-01D-A307-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	99ba1406-c89a-4509-927c-fc73304b5297	f6892671-6102-40e1-9d38-656a40b10c76	15	24922764	24922764	T	C	SNP	NPAP1	ENST00000329468	human	ensembl	74_37	+1	known	missense	c.1750	p.S584P	0.000	NULL	NULL	-	no_errors	NPAP1	HGNC	ENSG00000185823	tier1	-	-	36	0	0.00	32	8	20.00	122	0	0.00	107	14	11.57
PRR12	0	genome.wustl.edu	37	19	50100901	50100901	+	Silent	SNP	G	G	A			TCGA-DX-A3UF-01A-11D-A307-09	TCGA-DX-A3UF-10A-01D-A307-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	99ba1406-c89a-4509-927c-fc73304b5297	f6892671-6102-40e1-9d38-656a40b10c76	19	50100901	50100901	G	A	SNP	PRR12	ENST00000418929	human	ensembl	74_37	+1	novel	silent	c.3309	p.A1103	0.240	NULL	NULL	-	no_errors	PRR12	HGNC	ENSG00000126464	tier1	-	-	10	0	0.00	10	4	28.57	16	0	0.00	11	15	55.56
OR2T33	0	genome.wustl.edu	37	1	248436695	248436695	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3UF-01A-11D-A307-09	TCGA-DX-A3UF-10A-01D-A307-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	99ba1406-c89a-4509-927c-fc73304b5297	f6892671-6102-40e1-9d38-656a40b10c76	1	248436695	248436695	C	T	SNP	OR2T33	ENST00000318021	human	ensembl	74_37	-1	known	missense	c.422	p.R141K	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T33	HGNC	ENSG00000177212	tier1	rs71642437	-	259	0	0.00	161	42	20.69	126	0	0.00	122	28	18.67
VTCN1	0	genome.wustl.edu	37	1	117690386	117690386	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3UF-01A-11D-A307-09	TCGA-DX-A3UF-10A-01D-A307-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	99ba1406-c89a-4509-927c-fc73304b5297	f6892671-6102-40e1-9d38-656a40b10c76	1	117690386	117690386	C	T	SNP	VTCN1	ENST00000359008	human	ensembl	74_37	-1	known	missense	c.752	p.R251Q	0.962	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	VTCN1	HGNC	ENSG00000134258	tier1	-	-	90	0	0.00	35	12	25.53	99	0	0.00	52	40	43.01
CHTOP	0	genome.wustl.edu	37	1	153615716	153615716	+	Silent	SNP	C	C	T			TCGA-DX-A3UF-01A-11D-A307-09	TCGA-DX-A3UF-10A-01D-A307-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	99ba1406-c89a-4509-927c-fc73304b5297	f6892671-6102-40e1-9d38-656a40b10c76	1	153615716	153615716	C	T	SNP	CHTOP	ENST00000368694	human	ensembl	74_37	+1	known	silent	c.417	p.L139	1.000	NULL	NULL	-	no_errors	CHTOP	HGNC	ENSG00000160679	tier1	-	-	65	0	0.00	42	19	30.65	95	0	0.00	74	40	35.09
RGSL1	0	genome.wustl.edu	37	1	182458326	182458326	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A3UF-01A-11D-A307-09	TCGA-DX-A3UF-10A-01D-A307-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	99ba1406-c89a-4509-927c-fc73304b5297	f6892671-6102-40e1-9d38-656a40b10c76	1	182458326	182458326	T	A	SNP	RGSL1	ENST00000294854	human	ensembl	74_37	+1	known	missense	c.1706	p.V569E	0.981	NULL	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam	-	no_errors	RGSL1	HGNC	ENSG00000121446	tier1	-	-	37	0	0.00	24	11	31.43	75	0	0.00	102	33	24.44
TECPR2	0	genome.wustl.edu	37	14	102898417	102898417	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A3UF-01A-11D-A307-09	TCGA-DX-A3UF-10A-01D-A307-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	99ba1406-c89a-4509-927c-fc73304b5297	f6892671-6102-40e1-9d38-656a40b10c76	14	102898417	102898417	G	C	SNP	TECPR2	ENST00000359520	human	ensembl	74_37	+1	known	missense	c.1369	p.V457L	0.040	NULL	pfam_Beta-propeller_rpt_TECPR,superfamily_WD40_repeat_dom,superfamily_RCC1/BLIP-II,smart_WD40_repeat,smart_Beta-propeller_rpt_TECPR	-	no_errors	TECPR2	HGNC	ENSG00000196663	tier1	-	-	48	0	0.00	36	5	12.20	16	0	0.00	23	3	11.54
LOC653786	0	genome.wustl.edu	37	16	22580493	22580493	+	R	SNP	A	A	T			TCGA-DX-A3UF-01A-11D-A307-09	TCGA-DX-A3UF-10A-01D-A307-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	99ba1406-c89a-4509-927c-fc73304b5297	f6892671-6102-40e1-9d38-656a40b10c76	16	22580493	22580493	A	T	SNP	LOC653786	ENST00000550753	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-368J21.3	Clone_based_vega_gene	ENSG00000257838	tier1	-	-	89	0	0.00	45	10	18.18	107	0	0.00	81	19	18.81
EMX1	0	genome.wustl.edu	37	2	73160999	73160999	+	Silent	SNP	G	G	A			TCGA-DX-A3UF-01A-11D-A307-09	TCGA-DX-A3UF-10A-01D-A307-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	99ba1406-c89a-4509-927c-fc73304b5297	f6892671-6102-40e1-9d38-656a40b10c76	2	73160999	73160999	G	A	SNP	EMX1	ENST00000258106	human	ensembl	74_37	+1	known	silent	c.789	p.K263	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	EMX1	HGNC	ENSG00000135638	tier1	-	-	54	0	0.00	26	5	16.13	102	0	0.00	50	15	23.08
PFKP	0	genome.wustl.edu	37	10	3146134	3146134	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A3UF-01A-11D-A307-09	TCGA-DX-A3UF-10A-01D-A307-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	99ba1406-c89a-4509-927c-fc73304b5297	f6892671-6102-40e1-9d38-656a40b10c76	10	3146134	3146134	G	C	SNP	PFKP	ENST00000381125	human	ensembl	74_37	+1	known	missense	c.618	p.Q206H	1.000	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,prints_Phosphofructokinase,tigrfam_6-phosphofructokinase_euk	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,prints_Phosphofructokinase,tigrfam_6-phosphofructokinase_euk	-	no_errors	PFKP	HGNC	ENSG00000067057	tier1	-	-	29	0	0.00	9	11	55.00	46	0	0.00	26	6	18.75
MYOM2	0	genome.wustl.edu	37	8	2044184	2044184	+	Silent	SNP	C	C	A			TCGA-DX-A3UF-01A-11D-A307-09	TCGA-DX-A3UF-10A-01D-A307-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	99ba1406-c89a-4509-927c-fc73304b5297	f6892671-6102-40e1-9d38-656a40b10c76	8	2044184	2044184	C	A	SNP	MYOM2	ENST00000262113	human	ensembl	74_37	+1	known	silent	c.2223	p.P741	0.325	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYOM2	HGNC	ENSG00000036448	tier1	-	-	64	0	0.00	32	26	44.83	101	0	0.00	59	39	39.80
MAGED1	0	genome.wustl.edu	37	X	51639866	51639866	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A3UF-01A-11D-A307-09	TCGA-DX-A3UF-10A-01D-A307-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	99ba1406-c89a-4509-927c-fc73304b5297	f6892671-6102-40e1-9d38-656a40b10c76	X	51639866	51639866	T	A	SNP	MAGED1	ENST00000375695	human	ensembl	74_37	+1	known	missense	c.1283	p.L428Q	0.102	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGED1	HGNC	ENSG00000179222	tier1	-	-	116	0	0.00	214	37	14.74	64	0	0.00	165	26	13.61
OR7A5	0	genome.wustl.edu	37	19	14939050	14939050	+	Nonsense_Mutation	SNP	C	C	A			TCGA-DX-A3UF-01A-11D-A307-09	TCGA-DX-A3UF-10A-01D-A307-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	99ba1406-c89a-4509-927c-fc73304b5297	f6892671-6102-40e1-9d38-656a40b10c76	19	14939050	14939050	C	A	SNP	OR7A5	ENST00000322301	human	ensembl	74_37	-1	known	nonsense	c.4	p.E2*	0.810	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR7A5	HGNC	ENSG00000188269	tier1	-	-	101	0	0.00	62	50	44.64	82	0	0.00	59	52	46.85
PKHD1L1	0	genome.wustl.edu	37	8	110412352	110412352	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A3UF-01A-11D-A307-09	TCGA-DX-A3UF-10A-01D-A307-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	99ba1406-c89a-4509-927c-fc73304b5297	f6892671-6102-40e1-9d38-656a40b10c76	8	110412352	110412352	C	A	SNP	PKHD1L1	ENST00000378402	human	ensembl	74_37	+1	known	missense	c.1060	p.R354S	0.888	superfamily_Ig_E-set,smart_IPT,smart_PA14	pfam_IPT,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038	tier1	-	-	106	0	0.00	42	39	48.15	111	0	0.00	61	33	34.38
FGFR1	0	genome.wustl.edu	37	8	38285564	38285564	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3UF-01A-11D-A307-09	TCGA-DX-A3UF-10A-01D-A307-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	99ba1406-c89a-4509-927c-fc73304b5297	f6892671-6102-40e1-9d38-656a40b10c76	8	38285564	38285564	G	A	SNP	FGFR1	ENST00000425967	human	ensembl	74_37	-1	known	missense	c.589	p.H197Y	1.000	pirsf_FGF_rcpt_fam,smart_Ig_sub,pfscan_Ig-like_dom	pirsf_FGF_rcpt_fam,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	FGFR1	HGNC	ENSG00000077782	tier1	-	-	142	0	0.00	77	50	39.37	56	1	1.75	40	17	29.82
OR10Z1	0	genome.wustl.edu	37	1	158577164	158577164	+	Silent	SNP	A	A	G			TCGA-DX-A3UF-01A-11D-A307-09	TCGA-DX-A3UF-10A-01D-A307-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	99ba1406-c89a-4509-927c-fc73304b5297	f6892671-6102-40e1-9d38-656a40b10c76	1	158577164	158577164	A	G	SNP	OR10Z1	ENST00000361284	human	ensembl	74_37	+1	known	silent	c.936	p.K312	0.009	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10Z1	HGNC	ENSG00000198967	tier1	-	-	46	0	0.00	18	17	48.57	107	0	0.00	78	63	44.68
TLR9	0	genome.wustl.edu	37	3	52255778	52255778	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3UF-01A-11D-A307-09	TCGA-DX-A3UF-10A-01D-A307-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	99ba1406-c89a-4509-927c-fc73304b5297	f6892671-6102-40e1-9d38-656a40b10c76	3	52255778	52255778	C	T	SNP	TLR9	ENST00000597542	human	ensembl	74_37	-1	known	missense	c.2626	p.A876T	0.998	NULL	pfam_Leu-rich_rpt,pfam_TIR_dom,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR9	HGNC	ENSG00000239732	tier1	-	-	71	0	0.00	65	10	13.16	25	0	0.00	32	9	21.95
WDR81	0	genome.wustl.edu	37	17	1630298	1630298	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3UF-01A-11D-A307-09	TCGA-DX-A3UF-10A-01D-A307-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	99ba1406-c89a-4509-927c-fc73304b5297	f6892671-6102-40e1-9d38-656a40b10c76	17	1630298	1630298	C	T	SNP	WDR81	ENST00000409644	human	ensembl	74_37	+1	known	missense	c.2045	p.S682F	0.134	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Kinase-like_dom,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR81	HGNC	ENSG00000167716	tier1	-	-	59	0	0.00	37	40	51.95	68	0	0.00	34	47	58.02
OR2T4	0	genome.wustl.edu	37	1	248525837	248525837	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A3UF-01A-11D-A307-09	TCGA-DX-A3UF-10A-01D-A307-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	99ba1406-c89a-4509-927c-fc73304b5297	f6892671-6102-40e1-9d38-656a40b10c76	1	248525837	248525837	C	A	SNP	OR2T4	ENST00000366475	human	ensembl	74_37	+1	known	missense	c.955	p.P319T	0.996	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T4	HGNC	ENSG00000196944	tier1	-	-	244	0	0.00	165	31	15.82	44	0	0.00	52	6	10.34
IARS	0	genome.wustl.edu	37	9	95013076	95013076	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A3UF-01A-11D-A307-09	TCGA-DX-A3UF-10A-01D-A307-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	99ba1406-c89a-4509-927c-fc73304b5297	f6892671-6102-40e1-9d38-656a40b10c76	9	95013076	95013076	T	C	SNP	IARS	ENST00000375643	human	ensembl	74_37	-1	known	missense	c.2348	p.N783S	1.000	pfam_V/L/I-tR-synth_anticodon-bd,superfamily_tRsynth_1a_anticodon-bd,tigrfam_Ile-tR-ligase	pfam_aa-tR-synth_Ia,pfam_V/L/I-tR-synth_anticodon-bd,pfam_Methionyl/Leucyl_tR_Synth,superfamily_Val/Leu/Ile-tR-synth_edit,superfamily_tRsynth_1a_anticodon-bd,prints_Ile-tR-ligase,tigrfam_Ile-tR-ligase	-	no_errors	IARS	HGNC	ENSG00000196305	tier1	-	-	58	0	0.00	28	21	42.86	120	0	0.00	65	65	50.00
TP53	0	genome.wustl.edu	37	17	7578191	7578191	+	Missense_Mutation	SNP	A	A	C			TCGA-DX-A3UF-01A-11D-A307-09	TCGA-DX-A3UF-10A-01D-A307-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	99ba1406-c89a-4509-927c-fc73304b5297	f6892671-6102-40e1-9d38-656a40b10c76	17	7578191	7578191	A	C	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.658	p.Y220D	0.998	pfam_p53_D-bd,superfamily_p53-like_TF_D-bd,prints_p53_tumour_suppressor	pfam_p53_D-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_D-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	-	-	69	0	0.00	13	46	77.97	97	0	0.00	21	97	82.20
CLDN15	0	genome.wustl.edu	37	7	100877561	100877561	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A3UF-01A-11D-A307-09	TCGA-DX-A3UF-10A-01D-A307-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	99ba1406-c89a-4509-927c-fc73304b5297	f6892671-6102-40e1-9d38-656a40b10c76	7	100877561	100877561	G	C	SNP	CLDN15	ENST00000308344	human	ensembl	74_37	-1	known	missense	c.380	p.A127G	0.680	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin,prints_Claudin15	-	no_errors	CLDN15	HGNC	ENSG00000106404	tier1	-	-	72	0	0.00	17	20	54.05	46	0	0.00	29	16	35.56
SLC22A14	0	genome.wustl.edu	37	3	38354512	38354512	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A3UF-01A-11D-A307-09	TCGA-DX-A3UF-10A-01D-A307-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	99ba1406-c89a-4509-927c-fc73304b5297	f6892671-6102-40e1-9d38-656a40b10c76	3	38354512	38354512	T	C	SNP	SLC22A14	ENST00000273173	human	ensembl	74_37	+1	known	missense	c.967	p.W323R	0.996	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A14	HGNC	ENSG00000144671	tier1	-	-	58	0	0.00	31	28	47.46	56	0	0.00	40	30	42.86
DCAF8	0	genome.wustl.edu	37	1	160187406	160187406	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A3UF-01A-11D-A307-09	TCGA-DX-A3UF-10A-01D-A307-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	99ba1406-c89a-4509-927c-fc73304b5297	f6892671-6102-40e1-9d38-656a40b10c76	1	160187406	160187406	G	C	SNP	DCAF8	ENST00000608310	human	ensembl	74_37	-1	known	missense	c.2232	p.D744E	1.000	NULL	pfam_Pex19,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF8	HGNC	ENSG00000132716	tier1	-	-	33	0	0.00	15	28	65.12	36	0	0.00	27	13	32.50
PPP1R13B	0	genome.wustl.edu	37	14	104201334	104201334	+	R	SNP	C	C	T			TCGA-DX-A3UF-01A-11D-A307-09	TCGA-DX-A3UF-10A-01D-A307-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	99ba1406-c89a-4509-927c-fc73304b5297	f6892671-6102-40e1-9d38-656a40b10c76	14	104201334	104201334	C	T	SNP	PPP1R13B	ENST00000555391	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.992	-	-	-	no_errors	PPP1R13B	HGNC	ENSG00000088808	tier1	-	-	75	0	0.00	35	20	36.36	140	0	0.00	76	70	47.95
DCAF8	0	genome.wustl.edu	37	1	160187383	160187383	+	Silent	SNP	C	C	T			TCGA-DX-A3UF-01A-11D-A307-09	TCGA-DX-A3UF-10A-01D-A307-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	99ba1406-c89a-4509-927c-fc73304b5297	f6892671-6102-40e1-9d38-656a40b10c76	1	160187383	160187383	C	T	SNP	DCAF8	ENST00000608310	human	ensembl	74_37	-1	known	silent	c.2255	p.*752	1.000	NULL	pfam_Pex19,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF8	HGNC	ENSG00000132716	tier1	-	-	27	0	0.00	13	22	59.46	36	0	0.00	31	11	26.19
C16orf91	0	genome.wustl.edu	37	16	1479302	1479302	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A3UF-01A-11D-A307-09	TCGA-DX-A3UF-10A-01D-A307-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	99ba1406-c89a-4509-927c-fc73304b5297	f6892671-6102-40e1-9d38-656a40b10c76	16	1479302	1479302	T	C	SNP	C16orf91	ENST00000310355	human	ensembl	74_37	-1	known	missense	c.44	p.E15G	0.230	NULL	prints_CCSMST1	-	no_errors	C16orf91	HGNC	ENSG00000174109	tier1	-	-	270	0	0.00	93	19	16.96	58	0	0.00	25	4	13.79
KNTC1	0	genome.wustl.edu	37	12	123042022	123042022	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A3UF-01A-11D-A307-09	TCGA-DX-A3UF-10A-01D-A307-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	99ba1406-c89a-4509-927c-fc73304b5297	f6892671-6102-40e1-9d38-656a40b10c76	12	123042022	123042022	T	C	SNP	KNTC1	ENST00000333479	human	ensembl	74_37	+1	known	missense	c.1364	p.V455A	0.997	NULL	pfam_RZZ-complex_KNTC1/ROD_C,superfamily_Quino_amine_DH_bsu,superfamily_WD40_repeat_dom,superfamily_PAH	-	no_errors	KNTC1	HGNC	ENSG00000184445	tier1	-	-	95	0	0.00	68	8	10.39	86	0	0.00	113	16	12.40
TRIM42	0	genome.wustl.edu	37	3	140401655	140401655	+	Silent	SNP	C	C	A			TCGA-DX-A3UF-01A-11D-A307-09	TCGA-DX-A3UF-10A-01D-A307-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	99ba1406-c89a-4509-927c-fc73304b5297	f6892671-6102-40e1-9d38-656a40b10c76	3	140401655	140401655	C	A	SNP	TRIM42	ENST00000286349	human	ensembl	74_37	+1	known	silent	c.693	p.R231	0.290	NULL	pfam_Znf_B-box,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Znf_B-box,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM42	HGNC	ENSG00000155890	tier1	-	-	79	0	0.00	101	12	10.62	31	0	0.00	27	5	15.62
PTPRU	0	genome.wustl.edu	37	1	29602257	29602257	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3UF-01A-11D-A307-09	TCGA-DX-A3UF-10A-01D-A307-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	99ba1406-c89a-4509-927c-fc73304b5297	f6892671-6102-40e1-9d38-656a40b10c76	1	29602257	29602257	C	T	SNP	PTPRU	ENST00000345512	human	ensembl	74_37	+1	known	missense	c.1442	p.T481M	1.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRU	HGNC	ENSG00000060656	tier1	-	-	33	0	0.00	9	16	64.00	136	0	0.00	22	78	78.00
LRRC40	0	genome.wustl.edu	37	1	70611568	70611568	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A3UF-01A-11D-A307-09	TCGA-DX-A3UF-10A-01D-A307-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	99ba1406-c89a-4509-927c-fc73304b5297	f6892671-6102-40e1-9d38-656a40b10c76	1	70611568	70611568	T	C	SNP	LRRC40	ENST00000370952	human	ensembl	74_37	-1	known	missense	c.1724	p.N575S	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC40	HGNC	ENSG00000066557	tier1	-	-	73	0	0.00	27	7	20.59	99	0	0.00	51	16	23.88
PPP6R1	0	genome.wustl.edu	37	19	55753603	55753604	+	Frame_Shift_Ins	INS	-	-	CC			TCGA-DX-A3UF-01A-11D-A307-09	TCGA-DX-A3UF-10A-01D-A307-09	-	-	-	CC	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	99ba1406-c89a-4509-927c-fc73304b5297	f6892671-6102-40e1-9d38-656a40b10c76	19	55753603	55753604	-	CC	INS	PPP6R1	ENST00000412770	human	ensembl	74_37	-1	known	frame_shift_ins	c.776_775	p.E259fs	1.000:1.000	pfam_SAPS,superfamily_ARM-type_fold	pfam_SAPS,superfamily_ARM-type_fold	-	no_errors	PPP6R1	HGNC	ENSG00000105063	tier1			46	0	0.00	35	12	25.53	38	0	0.00	18	11	37.93
GLIS1	0	genome.wustl.edu	37	1	54059922	54059922	+	Silent	SNP	C	C	T			TCGA-DX-A3UF-01A-11D-A307-09	TCGA-DX-A3UF-10A-01D-A307-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	99ba1406-c89a-4509-927c-fc73304b5297	f6892671-6102-40e1-9d38-656a40b10c76	1	54059922	54059922	C	T	SNP	GLIS1	ENST00000312233	human	ensembl	74_37	-1	known	silent	c.654	p.K218	1.000	smart_Znf_C2H2-like	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLIS1	HGNC	ENSG00000174332	tier1	-	-	56	0	0.00	14	29	67.44	11	0	0.00	2	4	66.67
NPDC1	0	genome.wustl.edu	37	9	139935042	139935042	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3UF-01A-11D-A307-09	TCGA-DX-A3UF-10A-01D-A307-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	99ba1406-c89a-4509-927c-fc73304b5297	f6892671-6102-40e1-9d38-656a40b10c76	9	139935042	139935042	C	T	SNP	NPDC1	ENST00000371600	human	ensembl	74_37	-1	known	missense	c.866	p.R289H	0.808	pfam_NPDC1	pfam_NPDC1	-	no_errors	NPDC1	HGNC	ENSG00000107281	tier1	-	-	31	0	0.00	21	20	48.78	9	0	0.00	5	9	64.29
OXSM	0	genome.wustl.edu	37	3	25832990	25832990	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A3UF-01A-11D-A307-09	TCGA-DX-A3UF-10A-01D-A307-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	99ba1406-c89a-4509-927c-fc73304b5297	f6892671-6102-40e1-9d38-656a40b10c76	3	25832990	25832990	T	C	SNP	OXSM	ENST00000280701	human	ensembl	74_37	+1	known	missense	c.479	p.V160A	1.000	pfam_Ketoacyl_synth_N,superfamily_Thiolase-like,smart_PKS_Beta-ketoAc_synthase_dom,tigrfam_3-oxoacyl-ACP_synth-2	pfam_Ketoacyl_synth_N,pfam_Ketoacyl_synth_C,pfam_Thiolase_N,superfamily_Thiolase-like,smart_PKS_Beta-ketoAc_synthase_dom,tigrfam_3-oxoacyl-ACP_synth-2	-	no_errors	OXSM	HGNC	ENSG00000151093	tier1	-	-	55	0	0.00	36	5	12.20	101	0	0.00	100	9	8.18
CKAP2L	0	genome.wustl.edu	37	2	113513773	113513773	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A3UF-01A-11D-A307-09	TCGA-DX-A3UF-10A-01D-A307-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	99ba1406-c89a-4509-927c-fc73304b5297	f6892671-6102-40e1-9d38-656a40b10c76	2	113513773	113513773	C	A	SNP	CKAP2L	ENST00000302450	human	ensembl	74_37	-1	known	missense	c.1175	p.S392I	0.999	NULL	NULL	-	no_errors	CKAP2L	HGNC	ENSG00000169607	tier1	-	-	116	0	0.00	90	8	8.16	87	0	0.00	101	9	8.11
FOXO4	0	genome.wustl.edu	37	X	70320988	70320988	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A3UF-01A-11D-A307-09	TCGA-DX-A3UF-10A-01D-A307-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	99ba1406-c89a-4509-927c-fc73304b5297	f6892671-6102-40e1-9d38-656a40b10c76	X	70320988	70320988	G	T	SNP	FOXO4	ENST00000374259	human	ensembl	74_37	+1	known	missense	c.908	p.G303V	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXO4	HGNC	ENSG00000184481	tier1	-	-	82	0	0.00	49	8	13.79	91	0	0.00	115	8	6.50
ADAMTSL2	0	genome.wustl.edu	37	9	136402660	136402660	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A3UF-01A-11D-A307-09	TCGA-DX-A3UF-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99ba1406-c89a-4509-927c-fc73304b5297	f6892671-6102-40e1-9d38-656a40b10c76	9	136402660	136402660	T	A	SNP	ADAMTSL2	ENST00000393061	human	ensembl	74_37	+1	known	missense	c.551	p.L184Q	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTSL2	HGNC	ENSG00000197859	tier1	-	-	149	0	0.00	114	13	10.24	4	0	0.00	2	0	0.00
ENSG00000203849	0	genome.wustl.edu	37	1	142715153	142715153	+	R	SNP	G	G	T			TCGA-DX-A3UF-01A-11D-A307-09	TCGA-DX-A3UF-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99ba1406-c89a-4509-927c-fc73304b5297	f6892671-6102-40e1-9d38-656a40b10c76	1	142715153	142715153	G	T	SNP	ENSG00000203849	ENST00000610091	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.176	-	-	-	no_errors	RP11-417J8.6	Clone_based_vega_gene	ENSG00000203849	tier1	-	-	158	0	0.00	116	46	28.40	0	0	0.00	0	0	0.00
MAML3	0	genome.wustl.edu	37	4	140811064	140811066	+	Frame_Shift_Del	DEL	TGC	TGC	-			TCGA-DX-A3UF-01A-11D-A307-09	TCGA-DX-A3UF-10A-01D-A307-09	TGC	TGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99ba1406-c89a-4509-927c-fc73304b5297	f6892671-6102-40e1-9d38-656a40b10c76	4	140811064	140811066	TGC	-	DEL	MAML3	ENST00000398940	human	ensembl	74_37	-1	known	frame_shift_del	c.110_109	p.Q37fs	1.000:1.000	NULL	NULL	-	no_errors	MAML3	HGNC	ENSG00000196782	tier1			68	0	0.00	49	8	14.04	1	0	0.00	1	0	0.00
SIAH2	0	genome.wustl.edu	37	3	150480449	150480451	+	In_Frame_Del	DEL	CCG	CCG	-			TCGA-DX-A3UF-01A-11D-A307-09	TCGA-DX-A3UF-10A-01D-A307-09	CCG	CCG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99ba1406-c89a-4509-927c-fc73304b5297	f6892671-6102-40e1-9d38-656a40b10c76	3	150480449	150480451	CCG	-	DEL	SIAH2	ENST00000312960	human	ensembl	74_37	-1	known	in_frame_del	c.188_186	p.G63in_frame_del	1.000:1.000:0.993	NULL	pfam_7-in-absentia-prot_TRAF-dom,superfamily_TRAF-like,pfscan_Znf_RING,pfscan_Znf_SIAH	-	no_errors	SIAH2	HGNC	ENSG00000181788	tier1			18	0	0.00	15	2	11.76	4	0	0.00	3	0	0.00
SLC2A6	0	genome.wustl.edu	37	9	136340690	136340690	+	Silent	SNP	C	C	T			TCGA-DX-A3UF-01A-11D-A307-09	TCGA-DX-A3UF-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99ba1406-c89a-4509-927c-fc73304b5297	f6892671-6102-40e1-9d38-656a40b10c76	9	136340690	136340690	C	T	SNP	SLC2A6	ENST00000371899	human	ensembl	74_37	-1	known	silent	c.606	p.A202	0.998	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A6	HGNC	ENSG00000160326	tier1	-	-	31	0	0.00	21	7	25.00	3	0	0.00	0	0	0.00
SOX1	0	genome.wustl.edu	37	13	112722436	112722441	+	In_Frame_Del	DEL	TGGGCG	TGGGCG	-			TCGA-DX-A3UF-01A-11D-A307-09	TCGA-DX-A3UF-10A-01D-A307-09	TGGGCG	TGGGCG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99ba1406-c89a-4509-927c-fc73304b5297	f6892671-6102-40e1-9d38-656a40b10c76	13	112722436	112722441	TGGGCG	-	DEL	SOX1	ENST00000330949	human	ensembl	74_37	+1	known	in_frame_del	c.464_469	p.VG159in_frame_del	0.985:0.996:1.000:1.000:0.975:0.961	pfam_TF_SOX	pfam_HMG_box_dom,pfam_TF_SOX,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX1	HGNC	ENSG00000182968	tier1			1	0	0.00	0	0	0.00	1	0	0.00	0	0	0.00
C14orf180	0	genome.wustl.edu	37	14	105055119	105055127	+	Frame_Shift_Del	DEL	GACGGGCAG	GACGGGCAG	-			TCGA-DX-A3UF-01A-11D-A307-09	TCGA-DX-A3UF-10A-01D-A307-09	GACGGGCAG	GACGGGCAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99ba1406-c89a-4509-927c-fc73304b5297	f6892671-6102-40e1-9d38-656a40b10c76	14	105055119	105055127	GACGGGCAG	-	DEL	C14orf180	ENST00000410013	human	ensembl	74_37	+1	known	frame_shift_del	c.482_483	p.*161fs	0.046:0.035	NULL	NULL	-	no_errors	C14orf180	HGNC	ENSG00000184601	tier1			2	0	0.00	0	2	100.00	2	0	0.00	0	2	100.00
MGAM	0	genome.wustl.edu	37	7	141781869	141781869	+	Silent	SNP	C	C	T			TCGA-DX-A3UF-01A-11D-A307-09	TCGA-DX-A3UF-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99ba1406-c89a-4509-927c-fc73304b5297	f6892671-6102-40e1-9d38-656a40b10c76	7	141781869	141781869	C	T	SNP	MGAM	ENST00000475668	human	ensembl	74_37	+1	putative	silent	c.6030	p.T2010	1.000	superfamily_Gal_mutarotase_SF_dom	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335	tier1	-	-	92	0	0.00	71	7	8.97	60	0	0.00	58	2	3.33
TGFBR2	0	genome.wustl.edu	37	3	30691872	30691872	+	Frame_Shift_Del	DEL	A	A	-			TCGA-DX-A3UF-01A-11D-A307-09	TCGA-DX-A3UF-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99ba1406-c89a-4509-927c-fc73304b5297	f6892671-6102-40e1-9d38-656a40b10c76	3	30691872	30691872	A	-	DEL	TGFBR2	ENST00000359013	human	ensembl	74_37	+1	known	frame_shift_del	c.449	p.K153fs	1.000	pirsf_Transform_growth_fac-b_typ-2,pfam_Transforming_GF_b_rcpt_2_ecto,prints_TGFB_receptor	pirsf_Transform_growth_fac-b_typ-2,pfam_Transforming_GF_b_rcpt_2_ecto,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_TGFB_receptor,pfscan_Prot_kinase_dom	-	no_errors	TGFBR2	HGNC	ENSG00000163513	tier1			77	0	0.00	53	7	11.67	50	0	0.00	63	3	4.55
