Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
ATP5J2-PTCD1	0	genome.wustl.edu	37	7	99022880	99022880	+	Silent	SNP	G	G	A			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	7	99022880	99022880	G	A	SNP	ATP5J2-PTCD1	ENST00000413834	human	ensembl	74_37	-1	known	silent	c.1422	p.A474	0.000	NULL	pfam_Pentatricopeptide_repeat,pfam_F1F0-ATPsyn_F_prd,tigrfam_Pentatricopeptide_repeat	-	no_errors	ATP5J2-PTCD1	HGNC	ENSG00000248919	tier1	-	-	22	0	0.00	17	14	45.16	47	0	0.00	36	14	28.00
TNFRSF9	0	genome.wustl.edu	37	1	7995073	7995073	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	1	7995073	7995073	C	T	SNP	TNFRSF9	ENST00000377507	human	ensembl	74_37	-1	known	missense	c.544	p.G182R	0.003	NULL	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_9	-	no_errors	TNFRSF9	HGNC	ENSG00000049249	tier1	-	-	52	0	0.00	44	17	27.87	82	0	0.00	44	20	31.25
C4orf33	0	genome.wustl.edu	37	4	130030691	130030691	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	4	130030691	130030691	C	T	SNP	C4orf33	ENST00000281146	human	ensembl	74_37	+1	known	missense	c.358	p.L120F	0.981	NULL	NULL	-	no_errors	C4orf33	HGNC	ENSG00000151470	tier1	-	-	45	0	0.00	27	32	54.24	121	0	0.00	108	74	40.66
GLUL	0	genome.wustl.edu	37	1	182353691	182353691	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	1	182353691	182353691	C	T	SNP	GLUL	ENST00000311223	human	ensembl	74_37	-1	known	missense	c.971	p.R324H	1.000	pfam_Gln_synth_cat_dom	pfam_Gln_synth_cat_dom,pfam_Gln_synt_beta,superfamily_Gln_synt_beta	-	no_errors	GLUL	HGNC	ENSG00000135821	tier1	-	-	32	0	0.00	27	14	34.15	29	0	0.00	19	10	34.48
PLEKHA8P1	0	genome.wustl.edu	37	12	45567092	45567092	+	R	SNP	C	C	T			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	12	45567092	45567092	C	T	SNP	PLEKHA8P1	ENST00000256692	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.989	-	-	-	no_errors	PLEKHA8P1	HGNC	ENSG00000134297	tier1	rs145353585	-	78	0	0.00	83	13	13.54	66	0	0.00	41	10	19.61
CXorf30	0	genome.wustl.edu	37	X	36337408	36337408	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	X	36337408	36337408	C	T	SNP	CXorf30	ENST00000378657	human	ensembl	74_37	+1	known	missense	c.767	p.P256L	0.000	NULL	NULL	-	no_errors	CXorf30	HGNC	ENSG00000205081	tier1	-	-	31	0	0.00	18	22	55.00	42	0	0.00	10	27	71.05
OPCML	0	genome.wustl.edu	37	11	132307146	132307146	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	11	132307146	132307146	C	T	SNP	OPCML	ENST00000541867	human	ensembl	74_37	-1	known	missense	c.634	p.D212N	1.000	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	OPCML	HGNC	ENSG00000183715	tier1	-	-	47	0	0.00	28	25	47.17	64	0	0.00	24	19	44.19
PCDHA2	0	genome.wustl.edu	37	5	140176057	140176057	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	5	140176057	140176057	C	T	SNP	PCDHA2	ENST00000526136	human	ensembl	74_37	+1	known	missense	c.1508	p.A503V	0.132	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA2	HGNC	ENSG00000204969	tier1	-	-	163	0	0.00	105	41	27.52	1	0	0.00	15	5	25.00
TRIM16	0	genome.wustl.edu	37	17	15554817	15554817	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	17	15554817	15554817	G	A	SNP	TRIM16	ENST00000336708	human	ensembl	74_37	-1	known	missense	c.107	p.S36L	0.049	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl_sf,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,prints_Butyrophylin	-	no_errors	TRIM16	HGNC	ENSG00000221926	tier1	-	-	29	0	0.00	63	9	12.50	39	0	0.00	93	19	16.96
RNF183	0	genome.wustl.edu	37	9	116059948	116059948	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	9	116059948	116059948	C	T	SNP	RNF183	ENST00000297894	human	ensembl	74_37	-1	known	missense	c.517	p.V173I	0.261	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF183	HGNC	ENSG00000165188	tier1	-	-	33	0	0.00	30	19	38.78	85	0	0.00	86	29	25.22
SIRT3	0	genome.wustl.edu	37	11	233415	233415	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	11	233415	233415	G	A	SNP	SIRT3	ENST00000382743	human	ensembl	74_37	-1	known	missense	c.401	p.A134V	0.000	pirsf_D-dep_deAcase_SIR2_class_I,pfscan_Ssirtuin_cat_dom	pfam_Sirtuin,pirsf_D-dep_deAcase_SIR2_class_I,pfscan_Ssirtuin_cat_dom	-	no_errors	SIRT3	HGNC	ENSG00000142082	tier1	-	-	18	0	0.00	18	9	33.33	59	0	0.00	37	9	19.57
ENSG00000211996	0	genome.wustl.edu	37	6	130068891	130068891	+	R	SNP	G	G	A			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	6	130068891	130068891	G	A	SNP	ENSG00000211996	ENST00000390707	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.085	-	-	-	no_errors	Z97352.1	Clone_based_ensembl_gene	ENSG00000211996	tier1	-	-	38	0	0.00	16	6	27.27	63	0	0.00	45	16	26.23
ENSG00000214581	0	genome.wustl.edu	37	16	34682224	34682224	+	R	SNP	C	C	A			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	16	34682224	34682224	C	A	SNP	ENSG00000214581	ENST00000568619	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.136	-	-	-	no_errors	RP11-80F22.10	Clone_based_vega_gene	ENSG00000214581	tier1	-	-	77	0	0.00	69	23	25.00	101	0	0.00	64	24	27.27
CAPN8	0	genome.wustl.edu	37	1	223716526	223716526	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	1	223716526	223716526	G	T	SNP	CAPN8	ENST00000366872	human	ensembl	74_37	-1	known	missense	c.1966	p.L656I	0.998	NULL	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,pfscan_EF_hand_dom,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN8	HGNC	ENSG00000203697	tier1	-	-	57	0	0.00	40	24	37.50	90	1	1.10	67	13	16.25
ZNF391	0	genome.wustl.edu	37	6	27368642	27368642	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	6	27368642	27368642	T	C	SNP	ZNF391	ENST00000244576	human	ensembl	74_37	+1	known	missense	c.493	p.Y165H	0.906	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF391	HGNC	ENSG00000124613	tier1	-	-	25	0	0.00	20	9	31.03	61	0	0.00	34	12	26.09
TLR2	0	genome.wustl.edu	37	4	154626356	154626356	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	4	154626356	154626356	T	C	SNP	TLR2	ENST00000260010	human	ensembl	74_37	+1	known	missense	c.2297	p.M766T	0.000	pirsf_Toll-like_receptor,pfam_TIR_dom,superfamily_TIR_dom,smart_TIR_dom,pfscan_TIR_dom	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR2	HGNC	ENSG00000137462	tier1	-	-	43	0	0.00	18	18	50.00	123	0	0.00	76	47	38.21
MAP2K7	0	genome.wustl.edu	37	19	7976147	7976147	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	19	7976147	7976147	G	A	SNP	MAP2K7	ENST00000545011	human	ensembl	74_37	+1	known	missense	c.994	p.D332N	0.999	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP2K7	HGNC	ENSG00000076984	tier1	-	-	22	0	0.00	33	9	21.43	34	0	0.00	48	10	17.24
TEX37	0	genome.wustl.edu	37	2	88828633	88828633	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	2	88828633	88828633	C	T	SNP	TEX37	ENST00000303254	human	ensembl	74_37	+1	known	missense	c.184	p.P62S	0.987	NULL	NULL	-	no_errors	TEX37	HGNC	ENSG00000172073	tier1	-	-	38	0	0.00	29	16	34.78	131	0	0.00	87	35	28.69
SLC25A36	0	genome.wustl.edu	37	3	140695202	140695207	+	In_Frame_Del	DEL	TCGTGG	TCGTGG	-			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	TCGTGG	TCGTGG	TCGTGG	-	TCGTGG	TCGTGG	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	3	140695202	140695207	TCGTGG	-	DEL	SLC25A36	ENST00000324194	human	ensembl	74_37	+1	known	in_frame_del	c.843_848	p.RG282in_frame_del	1.000:1.000:1.000:0.993:1.000:1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier,prints_Mit_uncoupling	-	no_errors	SLC25A36	HGNC	ENSG00000114120	tier1			90	0	0.00	35	22	38.60	90	0	0.00	35	22	38.60
MYH7	0	genome.wustl.edu	37	14	23884643	23884645	+	In_Frame_Del	DEL	CCT	CCT	-			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	CCT	CCT	CCT	-	CCT	CCT	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	14	23884643	23884645	CCT	-	DEL	MYH7	ENST00000355349	human	ensembl	74_37	-1	known	in_frame_del	c.5230_5228	p.E1743in_frame_del	1.000:0.995:1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7	HGNC	ENSG00000092054	tier1			55	0	0.00	45	14	23.73	97	0	0.00	62	17	21.52
ENSG00000234222	0	genome.wustl.edu	37	1	145508402	145508415	+	Splice_Site	DEL	CTCACTCTATTCCT	CTCACTCTATTCCT	-			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	CTCACTCTATTCCT	CTCACTCTATTCCT	CTCACTCTATTCCT	-	CTCACTCTATTCCT	CTCACTCTATTCCT	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	1	145508402	145508415	CTCACTCTATTCCT	-	DEL	ENSG00000234222	ENST00000596355	human	ensembl	74_37	-1	known	splice_site_del	c.NULL	NULL	0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000	-	-	-	no_errors	RP11-315I20.1	Clone_based_vega_gene	ENSG00000234222	tier1			108	0	0.00	81	9	10.00	108	0	0.00	81	9	10.00
PYCR1	0	genome.wustl.edu	37	17	79894067	79894067	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	17	79894067	79894067	C	T	SNP	PYCR1	ENST00000329875	human	ensembl	74_37	-1	known	missense	c.70	p.V24I	0.039	pfam_G3P_DH_D-dep_N,pirsf_Pyrroline-COOH_reductase,tigrfam_Pyrroline-COOH_reductase	pfam_G3P_DH_D-dep_N,superfamily_6-PGluconate_DH_C-like,pirsf_Pyrroline-COOH_reductase,tigrfam_Pyrroline-COOH_reductase	-	no_errors	PYCR1	HGNC	ENSG00000183010	tier1	-	-	49	0	0.00	60	13	17.81	72	0	0.00	56	4	6.67
FAM118A	0	genome.wustl.edu	37	22	45719209	45719209	+	Silent	SNP	G	G	A			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	22	45719209	45719209	G	A	SNP	FAM118A	ENST00000216214	human	ensembl	74_37	+1	known	silent	c.201	p.E67	1.000	NULL	superfamily_RNaseH-like_dom	-	no_errors	FAM118A	HGNC	ENSG00000100376	tier1	-	-	19	0	0.00	15	5	25.00	32	0	0.00	38	4	9.52
SLC19A1	0	genome.wustl.edu	37	21	46951687	46951687	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	21	46951687	46951687	A	T	SNP	SLC19A1	ENST00000311124	human	ensembl	74_37	-1	known	missense	c.565	p.S189T	1.000	pfam_Folate_carrier,superfamily_MFS_dom_general_subst_transpt,pirsf_Folate_carrier,tigrfam_Folate_carrier	pfam_Folate_carrier,superfamily_MFS_dom_general_subst_transpt,pirsf_Folate_carrier,tigrfam_Folate_carrier	-	no_errors	SLC19A1	HGNC	ENSG00000173638	tier1	-	-	45	0	0.00	30	18	36.73	22	1	4.35	51	13	20.31
CELP	0	genome.wustl.edu	37	9	135962585	135962586	+	R	INS	-	-	GCCCCATCCCCGCTACGGGTGACTCTGAGGCC			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	9	135962585	135962586	-	GCCCCATCCCCGCTACGGGTGACTCTGAGGCC	INS	CELP	ENST00000411440	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.130:0.000	-	-	-	no_errors	CELP	HGNC	ENSG00000170827	tier1			9	0	0.00	5	1	16.67	9	0	0.00	5	1	16.67
EP400	0	genome.wustl.edu	37	12	132547141	132547141	+	Silent	SNP	G	G	A			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	12	132547141	132547141	G	A	SNP	EP400	ENST00000333577	human	ensembl	74_37	+1	known	silent	c.8337	p.Q2779	0.737	NULL	pfam_SNF2_N,pfam_Helicase/SANT-assoc_D-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_D-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495	tier1	-	-	22	0	0.00	26	4	13.33	5	0	0.00	3	0	0.00
DUOXA2	0	genome.wustl.edu	37	15	45409411	45409411	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	15	45409411	45409411	C	T	SNP	DUOXA2	ENST00000323030	human	ensembl	74_37	+1	known	missense	c.677	p.S226F	0.995	pfam_Dual_oxidase_maturation_fac	pfam_Dual_oxidase_maturation_fac	-	no_errors	DUOXA2	HGNC	ENSG00000140274	tier1	-	-	25	0	0.00	17	7	29.17	2	0	0.00	2	0	0.00
HCN2	0	genome.wustl.edu	37	19	613914	613914	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	19	613914	613914	C	A	SNP	HCN2	ENST00000251287	human	ensembl	74_37	+1	known	missense	c.1888	p.L630I	1.000	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	HCN2	HGNC	ENSG00000099822	tier1	-	-	48	0	0.00	46	4	8.00	0	0	0.00	2	0	0.00
HOXA9	0	genome.wustl.edu	37	7	27204839	27204839	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	7	27204839	27204839	C	A	SNP	HOXA9	ENST00000343483	human	ensembl	74_37	-1	known	missense	c.238	p.A80S	1.000	pfam_Hox9_activation_N,pirsf_Homeobox_Hox9	pfam_Hox9_activation_N,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pirsf_Homeobox_Hox9,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXA9	HGNC	ENSG00000078399	tier1	-	-	27	0	0.00	11	3	21.43	0	0	0.00	3	0	0.00
LAMC3	0	genome.wustl.edu	37	9	133901823	133901823	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	9	133901823	133901823	G	T	SNP	LAMC3	ENST00000361069	human	ensembl	74_37	+1	known	missense	c.525	p.E175D	0.946	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_B_type_IV,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMC3	HGNC	ENSG00000050555	tier1	-	-	43	0	0.00	36	4	10.00	2	0	0.00	7	0	0.00
NPIPP1	0	genome.wustl.edu	37	16	15198400	15198401	+	R	INS	-	-	G			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	16	15198400	15198401	-	G	INS	NPIPP1	ENST00000534799	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.017:0.018	-	-	-	no_errors	NPIPP1	HGNC	ENSG00000188599	tier1			28	0	0.00	45	9	16.67	0	0	0.00	0	0	0.00
PSG1	0	genome.wustl.edu	37	19	43383883	43383883	+	R	SNP	C	C	T			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	19	43383883	43383883	C	T	SNP	PSG1	ENST00000601073	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	PSG1	HGNC	ENSG00000231924	tier1	-	-	35	0	0.00	47	5	9.62	0	0	0.00	7	1	12.50
RPL23AP82	0	genome.wustl.edu	37	22	51237643	51237643	+	R	SNP	C	C	G			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	22	51237643	51237643	C	G	SNP	RPL23AP82	ENST00000462238	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	AC002055.4	Clone_based_vega_gene	ENSG00000184319	tier1	-	-	19	0	0.00	11	8	42.11	0	0	0.00	0	0	0.00
SLC12A2	0	genome.wustl.edu	37	5	127419938	127419955	+	In_Frame_Del	DEL	GCGGCGGCGGCGGCGGCA	GCGGCGGCGGCGGCGGCA	-			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	GCGGCGGCGGCGGCGGCA	GCGGCGGCGGCGGCGGCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	5	127419938	127419955	GCGGCGGCGGCGGCGGCA	-	DEL	SLC12A2	ENST00000262461	human	ensembl	74_37	+1	known	in_frame_del	c.292_309	p.AAAAAA101in_frame_del	0.986:0.660:0.322:0.982:0.990:0.982:0.984:0.993:0.986:0.997:0.991:0.966:0.942:0.693:0.010:0.018:0.020:0.019	NULL	pfam_AA-permease/SLC12A_dom,pfam_AA_permease_N,prints_Na/K/Cl_cotranspt1,prints_Na/K/Cl_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A2	HGNC	ENSG00000064651	tier1			0	0	0.00	2	0	0.00	0	0	0.00	2	0	0.00
ANKRD30BP2	0	genome.wustl.edu	37	21	14418386	14418386	+	R	SNP	A	A	T			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	21	14418386	14418386	A	T	SNP	ANKRD30BP2	ENST00000507941	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	ANKRD30BP2	HGNC	ENSG00000224309	tier1	rs201367790	-	23	0	0.00	31	6	16.22	20	0	0.00	25	2	7.41
