Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
PCDH15	0	genome.wustl.edu	37	10	55581545	55581545	+	R	SNP	G	G	A			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	10	55581545	55581545	G	A	SNP	PCDH15	ENST00000463095	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.158	-	-	-	no_errors	PCDH15	HGNC	ENSG00000150275	tier1	-	-	48	0	0.00	18	7	28.00	91	0	0.00	25	27	51.92
LPL	0	genome.wustl.edu	37	8	19811678	19811678	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	8	19811678	19811678	C	T	SNP	LPL	ENST00000311322	human	ensembl	74_37	+1	known	missense	c.589	p.R197C	0.989	pirsf_Lipoprotein_lipase_LIPH,pfam_Lipase_N,tigrfam_Lipo_Lipase	pirsf_Lipoprotein_lipase_LIPH,pfam_Lipase_N,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,prints_Lipo_Lipase,prints_Lipase,pfscan_PLAT/LH2_dom,tigrfam_Lipo_Lipase	-	no_errors	LPL	HGNC	ENSG00000175445	tier1	-	-	87	0	0.00	43	22	33.85	78	0	0.00	66	35	34.65
FLJ41200	0	genome.wustl.edu	37	9	13408345	13408345	+	R	SNP	C	C	T			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	9	13408345	13408345	C	T	SNP	FLJ41200	ENST00000604724	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-536O18.2	Clone_based_vega_gene	ENSG00000270547	tier1	-	-	64	0	0.00	32	8	20.00	95	0	0.00	92	14	13.08
MS4A14	0	genome.wustl.edu	37	11	60172032	60172032	+	Missense_Mutation	SNP	T	T	G			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	11	60172032	60172032	T	G	SNP	MS4A14	ENST00000525397	human	ensembl	74_37	+1	known	missense	c.482	p.L161R	0.003	NULL	pfam_CD20-like	-	no_errors	MS4A14	HGNC	ENSG00000166928	tier1	-	-	105	0	0.00	45	8	15.09	105	0	0.00	95	21	18.10
ACTL7B	0	genome.wustl.edu	37	9	111617550	111617550	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	9	111617550	111617550	G	A	SNP	ACTL7B	ENST00000374667	human	ensembl	74_37	-1	known	missense	c.661	p.R221C	0.808	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTL7B	HGNC	ENSG00000148156	tier1	-	-	25	0	0.00	7	8	53.33	19	0	0.00	19	7	26.92
PRTG	0	genome.wustl.edu	37	15	55965592	55965592	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	15	55965592	55965592	G	A	SNP	PRTG	ENST00000389286	human	ensembl	74_37	-1	known	missense	c.1829	p.T610M	1.000	superfamily_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	PRTG	HGNC	ENSG00000166450	tier1	-	-	42	0	0.00	21	7	25.00	78	0	0.00	80	26	24.53
SEC16A	0	genome.wustl.edu	37	9	139336249	139336249	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	9	139336249	139336249	C	G	SNP	SEC16A	ENST00000313050	human	ensembl	74_37	-1	known	missense	c.7032	p.R2344S	0.046	NULL	NULL	-	no_errors	SEC16A	HGNC	ENSG00000148396	tier1	-	-	32	0	0.00	11	12	52.17	44	0	0.00	17	25	59.52
MARCH7	0	genome.wustl.edu	37	2	160604560	160604560	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	2	160604560	160604560	C	G	SNP	MARCH7	ENST00000259050	human	ensembl	74_37	+1	known	missense	c.759	p.I253M	0.655	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH	-	no_errors	MARCH7	HGNC	ENSG00000136536	tier1	-	-	74	0	0.00	22	8	26.67	69	0	0.00	38	28	42.42
CUBN	0	genome.wustl.edu	37	10	16942707	16942707	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	10	16942707	16942707	G	T	SNP	CUBN	ENST00000377833	human	ensembl	74_37	-1	known	missense	c.8327	p.S2776Y	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611	tier1	-	-	78	0	0.00	19	15	44.12	84	0	0.00	43	37	46.25
BRF1	0	genome.wustl.edu	37	14	105678473	105678473	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	14	105678473	105678473	C	T	SNP	BRF1	ENST00000546474	human	ensembl	74_37	-1	known	missense	c.1801	p.A601T	0.033	NULL	pfam_TFIIB_cyclin,pfam_BRF1_TBP-bd,pfam_Znf_TFIIB,superfamily_Cyclin-like,smart_Cyclin-like,pfscan_Znf_TFIIB,prints_TFIIB	-	no_errors	BRF1	HGNC	ENSG00000185024	tier1	-	-	80	0	0.00	51	21	28.77	68	0	0.00	38	8	17.39
PRIM2	0	genome.wustl.edu	37	6	57498984	57498984	+	R	SNP	G	G	T			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	6	57498984	57498984	G	T	SNP	PRIM2	ENST00000389488	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.983	-	-	-	no_errors	PRIM2	HGNC	ENSG00000146143	tier1	-	-	165	0	0.00	106	18	14.52	211	1	0.47	141	21	12.96
MAPKAP1	0	genome.wustl.edu	37	9	128434681	128434681	+	Missense_Mutation	SNP	T	T	G			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	9	128434681	128434681	T	G	SNP	MAPKAP1	ENST00000265960	human	ensembl	74_37	-1	known	missense	c.173	p.N58T	0.988	pfam_SIN1	pfam_SIN1	-	no_errors	MAPKAP1	HGNC	ENSG00000119487	tier1	-	-	50	0	0.00	35	17	32.69	71	0	0.00	76	16	17.39
B3GNTL1	0	genome.wustl.edu	37	17	80919003	80919003	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	17	80919003	80919003	C	T	SNP	B3GNTL1	ENST00000320865	human	ensembl	74_37	-1	known	missense	c.655	p.V219I	0.056	NULL	pfam_Glyco_trans_2	-	no_errors	B3GNTL1	HGNC	ENSG00000175711	tier1	-	-	30	0	0.00	20	7	25.93	26	0	0.00	21	5	19.23
MUC16	0	genome.wustl.edu	37	19	9087836	9087836	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	19	9087836	9087836	T	C	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.3979	p.T1327A	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143	tier1	-	-	62	0	0.00	46	7	13.21	95	0	0.00	119	34	22.22
E2F7	0	genome.wustl.edu	37	12	77440013	77440013	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	12	77440013	77440013	G	A	SNP	E2F7	ENST00000322886	human	ensembl	74_37	-1	known	missense	c.634	p.R212W	1.000	NULL	pfam_E2F_TDP	-	no_errors	E2F7	HGNC	ENSG00000165891	tier1	-	-	31	0	0.00	14	9	39.13	68	0	0.00	34	25	41.67
OTOA	0	genome.wustl.edu	37	16	21716518	21716518	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	16	21716518	21716518	G	A	SNP	OTOA	ENST00000286149	human	ensembl	74_37	+1	known	missense	c.1051	p.D351N	1.000	NULL	NULL	-	no_errors	OTOA	HGNC	ENSG00000155719	tier1	-	-	69	0	0.00	54	5	8.47	73	0	0.00	62	9	12.50
SPP2	0	genome.wustl.edu	37	2	234959657	234959657	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	2	234959657	234959657	C	T	SNP	SPP2	ENST00000168148	human	ensembl	74_37	+1	known	missense	c.128	p.A43V	0.383	pfam_Prot_inh_cystat	pfam_Spp-24,pfam_Prot_inh_cystat	-	no_errors	SPP2	HGNC	ENSG00000072080	tier1	-	-	39	0	0.00	27	9	25.00	79	0	0.00	51	28	35.44
RAG2	0	genome.wustl.edu	37	11	36615530	36615530	+	Silent	SNP	A	A	T			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	11	36615530	36615530	A	T	SNP	RAG2	ENST00000311485	human	ensembl	74_37	-1	known	silent	c.189	p.S63	0.411	pfam_RAG2,superfamily_Gal_Oxase/kelch_b-propeller	pfam_RAG2,superfamily_Gal_Oxase/kelch_b-propeller,superfamily_Znf_FYVE_PHD	-	no_errors	RAG2	HGNC	ENSG00000175097	tier1	-	-	96	0	0.00	23	26	53.06	117	0	0.00	55	33	37.08
SYTL3	0	genome.wustl.edu	37	6	159178331	159178331	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	6	159178331	159178331	G	A	SNP	SYTL3	ENST00000297239	human	ensembl	74_37	+1	known	missense	c.1226	p.G409E	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,smart_C2_dom,pfscan_C2_dom,pfscan_Znf_FYVE-typ	-	no_errors	SYTL3	HGNC	ENSG00000164674	tier1	-	-	80	0	0.00	35	19	35.19	25	0	0.00	15	9	37.50
LOC100129345	0	genome.wustl.edu	37	14	98099864	98099864	+	R	SNP	A	A	T			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	14	98099864	98099864	A	T	SNP	LOC100129345	ENST00000355909	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.482	-	-	-	no_errors	RP11-76E12.1	Clone_based_vega_gene	ENSG00000197176	tier1	-	-	64	0	0.00	75	16	17.58	89	0	0.00	83	12	12.63
LPCAT2	0	genome.wustl.edu	37	16	55559550	55559550	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	16	55559550	55559550	G	T	SNP	LPCAT2	ENST00000262134	human	ensembl	74_37	+1	known	missense	c.302	p.G101V	0.986	NULL	pfam_EF_hand_dom,pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	-	no_errors	LPCAT2	HGNC	ENSG00000087253	tier1	-	-	82	0	0.00	26	21	44.68	99	0	0.00	51	22	30.14
KRT121P	0	genome.wustl.edu	37	12	52648079	52648079	+	R	SNP	C	C	T			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	12	52648079	52648079	C	T	SNP	KRT121P	ENST00000529785	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.834	-	-	-	no_errors	KRT121P	HGNC	ENSG00000135477	tier1	-	-	105	0	0.00	39	27	40.91	45	0	0.00	32	17	34.69
SCN1A	0	genome.wustl.edu	37	2	166854568	166854568	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	2	166854568	166854568	A	T	SNP	SCN1A	ENST00000303395	human	ensembl	74_37	-1	known	missense	c.4456	p.F1486I	1.000	NULL	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a1su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN1A	HGNC	ENSG00000144285	tier1	-	-	142	0	0.00	18	42	70.00	104	0	0.00	22	56	70.89
CBR3	0	genome.wustl.edu	37	21	37518768	37518768	+	Silent	SNP	A	A	T			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	21	37518768	37518768	A	T	SNP	CBR3	ENST00000290354	human	ensembl	74_37	+1	known	silent	c.792	p.P264	0.996	NULL	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	CBR3	HGNC	ENSG00000159231	tier1	-	-	48	0	0.00	37	7	15.91	80	0	0.00	73	17	18.68
RB1	0	genome.wustl.edu	37	13	49037972	49037972	+	Splice_Site	SNP	G	G	A			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	13	49037972	49037972	G	A	SNP	RB1	ENST00000267163	human	ensembl	74_37	+1	known	splice_site	c.2211+1	e21+1	1.000	-	-	-	no_errors	RB1	HGNC	ENSG00000139687	tier1	-	-	32	0	0.00	13	16	55.17	85	0	0.00	28	24	46.15
CCDC18	0	genome.wustl.edu	37	1	93730316	93730316	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	1	93730316	93730316	C	T	SNP	CCDC18	ENST00000557479	human	ensembl	74_37	+1	known	missense	c.4097	p.S1366F	0.998	superfamily_tR-bd_arm	superfamily_Prefoldin,superfamily_tR-bd_arm	-	no_errors	CCDC18	HGNC	ENSG00000122483	tier1	-	-	78	0	0.00	37	10	21.28	87	0	0.00	58	26	30.95
TTC1	0	genome.wustl.edu	37	5	159492027	159492027	+	Silent	SNP	C	C	G			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	5	159492027	159492027	C	G	SNP	TTC1	ENST00000231238	human	ensembl	74_37	+1	known	silent	c.834	p.G278	1.000	NULL	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC1	HGNC	ENSG00000113312	tier1	-	-	51	0	0.00	9	17	65.38	141	0	0.00	59	86	59.31
GPR34	0	genome.wustl.edu	37	X	41555919	41555919	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	X	41555919	41555919	C	T	SNP	GPR34	ENST00000378138	human	ensembl	74_37	+1	known	nonsense	c.1033	p.R345*	0.933	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR34	HGNC	ENSG00000171659	tier1	-	-	28	0	0.00	3	28	90.32	67	1	1.47	10	95	90.48
SIDT1	0	genome.wustl.edu	37	3	113325932	113325932	+	Silent	SNP	C	C	T			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	3	113325932	113325932	C	T	SNP	SIDT1	ENST00000393830	human	ensembl	74_37	+1	known	silent	c.1449	p.F483	1.000	NULL	NULL	-	no_errors	SIDT1	HGNC	ENSG00000072858	tier1	-	-	104	0	0.00	44	13	22.81	134	0	0.00	108	40	27.03
CCDC40	0	genome.wustl.edu	37	17	78073483	78073483	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	17	78073483	78073483	G	A	SNP	CCDC40	ENST00000397545	human	ensembl	74_37	+1	known	missense	c.3338	p.R1113H	0.107	NULL	pfam_E3_ubiquit_lig_BRE1	-	no_errors	CCDC40	HGNC	ENSG00000141519	tier1	-	-	76	0	0.00	37	15	28.85	22	0	0.00	22	6	21.43
CYP4A11	0	genome.wustl.edu	37	1	47400674	47400674	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	1	47400674	47400674	G	C	SNP	CYP4A11	ENST00000371904	human	ensembl	74_37	-1	known	missense	c.788	p.T263R	1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-II,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP4A11	HGNC	ENSG00000187048	tier1	-	-	56	0	0.00	38	4	9.52	20	0	0.00	14	3	17.65
ARHGAP31	0	genome.wustl.edu	37	3	119133384	119133384	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	3	119133384	119133384	A	T	SNP	ARHGAP31	ENST00000264245	human	ensembl	74_37	+1	known	missense	c.2608	p.I870F	0.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP31	HGNC	ENSG00000031081	tier1	-	-	71	0	0.00	31	25	44.64	99	0	0.00	61	79	55.63
PPP1R13B	0	genome.wustl.edu	37	14	104202499	104202499	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	14	104202499	104202499	C	T	SNP	PPP1R13B	ENST00000423488	human	ensembl	74_37	-1	known	missense	c.1162	p.V388I	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	PPP1R13B	HGNC	ENSG00000088808	tier1	-	-	80	0	0.00	32	21	39.62	82	1	1.20	39	45	53.57
ITGAV	0	genome.wustl.edu	37	2	187529902	187529902	+	Missense_Mutation	SNP	A	A	C			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	2	187529902	187529902	A	C	SNP	ITGAV	ENST00000261023	human	ensembl	74_37	+1	known	missense	c.2123	p.Q708P	0.990	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGAV	HGNC	ENSG00000138448	tier1	-	-	74	0	0.00	35	5	12.50	86	1	1.15	43	29	40.28
ADCYAP1R1	0	genome.wustl.edu	37	7	31124408	31124408	+	Silent	SNP	C	C	G			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	7	31124408	31124408	C	G	SNP	ADCYAP1R1	ENST00000304166	human	ensembl	74_37	+1	known	silent	c.495	p.L165	0.304	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_PACAP_1_rcpt,prints_GPCR_2_secretin-like	-	no_errors	ADCYAP1R1	HGNC	ENSG00000078549	tier1	-	-	76	0	0.00	54	13	19.40	92	0	0.00	98	20	16.95
OR5AC2	0	genome.wustl.edu	37	3	97806244	97806244	+	Silent	SNP	A	A	C			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	3	97806244	97806244	A	C	SNP	OR5AC2	ENST00000358642	human	ensembl	74_37	+1	known	silent	c.228	p.S76	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5AC2	HGNC	ENSG00000196578	tier1	-	-	60	0	0.00	46	8	14.81	110	0	0.00	98	24	19.67
BTG4	0	genome.wustl.edu	37	11	111369380	111369380	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	11	111369380	111369380	G	C	SNP	BTG4	ENST00000356018	human	ensembl	74_37	-1	known	missense	c.122	p.T41R	0.974	pfam_Anti_prolifrtn,smart_Anti_prolifrtn,prints_Anti_prolifrtn	pfam_Anti_prolifrtn,smart_Anti_prolifrtn,prints_Anti_prolifrtn	-	no_errors	BTG4	HGNC	ENSG00000137707	tier1	-	-	68	0	0.00	38	5	11.63	54	0	0.00	42	11	20.37
KAT7	0	genome.wustl.edu	37	17	47869337	47869337	+	Silent	SNP	A	A	C			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	17	47869337	47869337	A	C	SNP	KAT7	ENST00000259021	human	ensembl	74_37	+1	known	silent	c.105	p.T35	0.112	NULL	pfam_MOZ_SAS,pfam_Znf_C2HC,superfamily_Acyl_CoA_acyltransferase	-	no_errors	KAT7	HGNC	ENSG00000136504	tier1	-	-	101	0	0.00	50	15	23.08	56	0	0.00	42	21	33.33
HS3ST1	0	genome.wustl.edu	37	4	11401252	11401252	+	Silent	SNP	C	C	T			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	4	11401252	11401252	C	T	SNP	HS3ST1	ENST00000002596	human	ensembl	74_37	-1	known	silent	c.378	p.S126	0.988	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	HS3ST1	HGNC	ENSG00000002587	tier1	-	-	68	0	0.00	26	10	27.78	42	0	0.00	54	19	26.03
ABCA4	0	genome.wustl.edu	37	1	94497568	94497568	+	Silent	SNP	G	G	A			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	1	94497568	94497568	G	A	SNP	ABCA4	ENST00000370225	human	ensembl	74_37	-1	known	silent	c.3894	p.N1298	0.000	tigrfam_Rim_ABC_transpt	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Rim_ABC_transpt	-	no_errors	ABCA4	HGNC	ENSG00000198691	tier1	-	-	111	0	0.00	30	46	60.53	50	0	0.00	27	35	56.45
CAPN8	0	genome.wustl.edu	37	1	223718162	223718162	+	Silent	SNP	G	G	A			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	1	223718162	223718162	G	A	SNP	CAPN8	ENST00000366872	human	ensembl	74_37	-1	known	silent	c.1818	p.H606	0.534	NULL	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,pfscan_EF_hand_dom,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN8	HGNC	ENSG00000203697	tier1	-	-	89	0	0.00	44	15	25.42	68	0	0.00	43	16	27.12
TKTL1	0	genome.wustl.edu	37	X	153537746	153537746	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	X	153537746	153537746	G	T	SNP	TKTL1	ENST00000369915	human	ensembl	74_37	+1	known	missense	c.302	p.G101V	0.998	pfam_Transketolase_N,pfam_DH_E1	pfam_Transketolase_N,pfam_Transketolase-like_Pyr-bd,pfam_Transketolase_C,pfam_DH_E1,superfamily_Transketo_C/Pyr-ferredox_oxred,smart_Transketolase-like_Pyr-bd	-	no_errors	TKTL1	HGNC	ENSG00000007350	tier1	-	-	47	0	0.00	5	25	83.33	52	0	0.00	12	33	73.33
ZNF688	0	genome.wustl.edu	37	16	30582409	30582409	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	16	30582409	30582409	T	C	SNP	ZNF688	ENST00000223459	human	ensembl	74_37	-1	known	missense	c.232	p.M78V	1.000	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF688	HGNC	ENSG00000229809	tier1	-	-	156	0	0.00	72	25	25.77	54	1	1.82	56	12	17.65
LINC00577	0	genome.wustl.edu	37	6	105388262	105388262	+	R	SNP	G	G	A			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	6	105388262	105388262	G	A	SNP	LINC00577	ENST00000369123	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.008	-	-	-	no_errors	LINC00577	HGNC	ENSG00000203809	tier1	-	-	60	0	0.00	17	18	51.43	8	0	0.00	11	5	31.25
LPCAT2	0	genome.wustl.edu	37	16	55559549	55559549	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	16	55559549	55559549	G	T	SNP	LPCAT2	ENST00000262134	human	ensembl	74_37	+1	known	missense	c.301	p.G101C	0.969	NULL	pfam_EF_hand_dom,pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	-	no_errors	LPCAT2	HGNC	ENSG00000087253	tier1	-	-	82	0	0.00	26	21	44.68	99	0	0.00	50	22	30.56
PPP2R5B	0	genome.wustl.edu	37	11	64695300	64695300	+	Silent	SNP	G	G	A			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	11	64695300	64695300	G	A	SNP	PPP2R5B	ENST00000164133	human	ensembl	74_37	+1	known	silent	c.423	p.L141	0.968	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	-	no_errors	PPP2R5B	HGNC	ENSG00000068971	tier1	-	-	75	0	0.00	43	16	27.12	90	0	0.00	68	20	22.47
CATSPER1	0	genome.wustl.edu	37	11	65788571	65788571	+	Missense_Mutation	SNP	A	A	C			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	11	65788571	65788571	A	C	SNP	CATSPER1	ENST00000312106	human	ensembl	74_37	-1	known	missense	c.1777	p.C593G	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_PKD1_2_channel	-	no_errors	CATSPER1	HGNC	ENSG00000175294	tier1	-	-	244	0	0.00	93	95	50.53	37	0	0.00	15	26	63.41
OR11L1	0	genome.wustl.edu	37	1	248005032	248005032	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	1	248005032	248005032	T	C	SNP	OR11L1	ENST00000355784	human	ensembl	74_37	-1	known	missense	c.167	p.H56R	0.663	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR11L1	HGNC	ENSG00000197591	tier1	-	-	74	0	0.00	29	12	29.27	72	0	0.00	67	14	17.28
TTC3	0	genome.wustl.edu	37	21	38461127	38461127	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	21	38461127	38461127	A	G	SNP	TTC3	ENST00000354749	human	ensembl	74_37	+1	known	missense	c.367	p.K123E	1.000	NULL	pfam_Znf_C3HC4_RING-type,superfamily_DEATH-like_dom,smart_TPR_repeat,smart_Znf_RING,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	TTC3	HGNC	ENSG00000182670	tier1	-	-	84	0	0.00	53	22	29.33	29	0	0.00	20	12	37.50
RB1	0	genome.wustl.edu	37	13	49037932	49037933	+	Frame_Shift_Del	DEL	TG	TG	-			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	TG	TG	TG	-	TG	TG	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	13	49037932	49037933	TG	-	DEL	RB1	ENST00000267163	human	ensembl	74_37	+1	known	frame_shift_del	c.2172_2173	p.V725fs	0.997:1.000	pfam_RB_B,superfamily_Cyclin-like,smart_Cyclin-like	pfam_RB_C,pfam_RB_A,pfam_RB_B,pfam_RB_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	RB1	HGNC	ENSG00000139687	tier1			34	0	0.00	19	7	26.92	93	0	0.00	44	9	16.98
CELSR3	0	genome.wustl.edu	37	3	48700023	48700023	+	Silent	SNP	C	C	A			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	3	48700023	48700023	C	A	SNP	CELSR3	ENST00000544264	human	ensembl	74_37	-1	known	silent	c.45	p.S15	0.009	NULL	pfam_Cadherin,pfam_GPCR_2_secretin-like,pfam_Laminin_G,pfam_DUF3497,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR3	HGNC	ENSG00000008300	tier1	-	-	22	0	0.00	11	7	38.89	6	0	0.00	5	3	37.50
DH9	0	genome.wustl.edu	37	17	11833231	11833231	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	17	11833231	11833231	G	C	SNP	DH9	ENST00000262442	human	ensembl	74_37	+1	known	missense	c.11926	p.E3976Q	1.000	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DH9	HGNC	ENSG00000007174	tier1	-	-	55	0	0.00	130	15	10.34	77	0	0.00	232	25	9.73
ODF3	0	genome.wustl.edu	37	11	198465	198465	+	Frame_Shift_Del	DEL	C	C	-			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	11	198465	198465	C	-	DEL	ODF3	ENST00000325113	human	ensembl	74_37	+1	known	frame_shift_del	c.414	p.A140fs	0.960	NULL	pfam_SHIPPO-rpt	-	no_errors	ODF3	HGNC	ENSG00000177947	tier1			63	0	0.00	16	2	11.11	11	0	0.00	4	0	0.00
ZMYND19	0	genome.wustl.edu	37	9	140481430	140481430	+	Frame_Shift_Del	DEL	G	G	-			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	9	140481430	140481430	G	-	DEL	ZMYND19	ENST00000298585	human	ensembl	74_37	-1	known	frame_shift_del	c.348	p.S117fs	1.000	NULL	pfam_Znf_MYND,pfscan_Znf_MYND	-	no_errors	ZMYND19	HGNC	ENSG00000165724	tier1			96	0	0.00	19	3	13.64	20	0	0.00	6	0	0.00
BRINP2	0	genome.wustl.edu	37	1	177250848	177250848	+	R	SNP	G	G	A			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	1	177250848	177250848	G	A	SNP	BRINP2	ENST00000478325	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	BRINP2	HGNC	ENSG00000198797	tier1	-	-	54	0	0.00	27	8	22.86	2	0	0.00	6	0	0.00
MN1	0	genome.wustl.edu	37	22	28194934	28194936	+	In_Frame_Del	DEL	TGC	TGC	-			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	TGC	TGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	22	28194934	28194936	TGC	-	DEL	MN1	ENST00000302326	human	ensembl	74_37	-1	known	in_frame_del	c.1598_1596	p.Q536in_frame_del	1.000:1.000:0.998	NULL	NULL	-	no_errors	MN1	HGNC	ENSG00000169184	tier1			51	0	0.00	30	3	9.09	1	0	0.00	5	0	0.00
OR7E14P	0	genome.wustl.edu	37	11	17073884	17073884	+	R	SNP	G	G	A			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	11	17073884	17073884	G	A	SNP	OR7E14P	ENST00000530490	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	OR7E14P	HGNC	ENSG00000184669	tier1	-	-	100	1	0.99	67	7	9.46	0	0	0.00	2	0	0.00
PBX2P1	0	genome.wustl.edu	37	3	142897154	142897154	+	R	SNP	A	A	T			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	3	142897154	142897154	A	T	SNP	PBX2P1	ENST00000560287	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.993	-	-	-	no_errors	PBX2P1	HGNC	ENSG00000244171	tier1	-	-	122	0	0.00	82	8	8.89	0	0	0.00	1	0	0.00
PDCD6	0	genome.wustl.edu	37	5	271858	271869	+	In_Frame_Del	DEL	CCGGCCCTGGGG	CCGGCCCTGGGG	-			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	CCGGCCCTGGGG	CCGGCCCTGGGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	5	271858	271869	CCGGCCCTGGGG	-	DEL	PDCD6	ENST00000264933	human	ensembl	74_37	+1	known	in_frame_del	c.23_34	p.AGPG12in_frame_del	0.730:0.549:0.748:0.757:0.746:0.751:0.779:0.760:0.906:0.916:0.892:0.925	NULL	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	PDCD6	HGNC	ENSG00000249915	tier1			0	0	0.00	0	0	0.00	0	0	0.00	0	0	0.00
TBCA	0	genome.wustl.edu	37	5	77072041	77072041	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	5	77072041	77072041	C	T	SNP	TBCA	ENST00000380377	human	ensembl	74_37	-1	known	missense	c.41	p.G14D	1.000	pfam_CofA_tubulin-bd,superfamily_CofA_tubulin-bd	pfam_CofA_tubulin-bd,superfamily_CofA_tubulin-bd	-	no_errors	TBCA	HGNC	ENSG00000171530	tier1	-	-	54	0	0.00	37	4	9.76	0	0	0.00	5	0	0.00
THOC3	0	genome.wustl.edu	37	5	175395009	175395009	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	5	175395009	175395009	C	T	SNP	THOC3	ENST00000265097	human	ensembl	74_37	-1	known	missense	c.203	p.R68H	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_TIF_beta_prop-like,pfam_PD40,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	THOC3	HGNC	ENSG00000051596	tier1	-	-	64	0	0.00	29	4	12.12	1	0	0.00	5	0	0.00
UFL1	0	genome.wustl.edu	37	6	96969559	96969578	+	R	DEL	AACCCCCAGCGCCGCGGTAC	AACCCCCAGCGCCGCGGTAC	-			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	AACCCCCAGCGCCGCGGTAC	AACCCCCAGCGCCGCGGTAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	6	96969559	96969578	AACCCCCAGCGCCGCGGTAC	-	DEL	UFL1	ENST00000461673	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000:0.000:0.000:0.000:0.001:0.001:0.000:0.001:0.001:0.003:0.006:0.006:0.002:0.000:0.000:0.000:0.000:0.000:0.000	-	-	-	no_errors	UFL1	HGNC	ENSG00000014123	tier1			2	0	0.00	2	0	0.00	2	0	0.00	2	0	0.00
LPCAT1	0	genome.wustl.edu	37	5	1461841	1461842	+	R	INS	-	-	T			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	5	1461841	1461842	-	T	INS	LPCAT1	ENST00000503252	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.665:0.773	-	-	-	no_errors	LPCAT1	HGNC	ENSG00000153395	tier1			90	0	0.00	45	4	8.16	114	0	0.00	119	3	2.46
GALC	0	genome.wustl.edu	37	14	88454869	88454870	+	Splice_Site	INS	-	-	A			TCGA-DX-A7EM-01A-11D-A36J-09	TCGA-DX-A7EM-10A-01D-A36M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	de108904-cf45-4b19-9a45-e00f2a196711	da54443c-60f6-47cc-972a-f0a18afcf190	14	88454869	88454870	-	A	INS	GALC	ENST00000261304	human	ensembl	74_37	-1	known	splice_site_ins	c.196-3_196-2	e2-2	1.000:0.945	-	-	-	no_errors	GALC	HGNC	ENSG00000054983	tier1			29	0	0.00	20	4	16.67	70	0	0.00	62	2	3.12
