Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
COG8	0	genome.wustl.edu	37	16	69354710	69354710	+	R	SNP	C	C	T			TCGA-DX-A7EN-01A-11D-A38Z-09	TCGA-DX-A7EN-11A-11D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0a84adb8-cf08-4b90-87b1-f83b1bfd708d	80559ba7-da24-409e-83d1-cb19b30cd06f	16	69354710	69354710	C	T	SNP	COG8	ENST00000564419	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.001	-	-	-	no_errors	COG8	HGNC	ENSG00000213380	tier1	-	-	13	0	0.00	9	5	35.71	64	0	0.00	68	35	33.98
TP53	0	genome.wustl.edu	37	17	7577120	7577120	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A7EN-01A-11D-A38Z-09	TCGA-DX-A7EN-11A-11D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0a84adb8-cf08-4b90-87b1-f83b1bfd708d	80559ba7-da24-409e-83d1-cb19b30cd06f	17	7577120	7577120	C	T	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.818	p.R273H	0.864	pfam_p53_D-bd,superfamily_p53-like_TF_D-bd,prints_p53_tumour_suppressor	pfam_p53_D-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_D-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	rs28934576	GMAF=0.0005	33	0	0.00	21	17	44.74	102	0	0.00	78	49	38.58
DPY19L3	0	genome.wustl.edu	37	19	32954861	32954861	+	Nonsense_Mutation	SNP	C	C	G			TCGA-DX-A7EN-01A-11D-A38Z-09	TCGA-DX-A7EN-11A-11D-A38Z-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0a84adb8-cf08-4b90-87b1-f83b1bfd708d	80559ba7-da24-409e-83d1-cb19b30cd06f	19	32954861	32954861	C	G	SNP	DPY19L3	ENST00000342179	human	ensembl	74_37	+1	known	nonsense	c.1532	p.S511*	0.002	pfam_Dpy-19	pfam_Dpy-19	-	no_errors	DPY19L3	HGNC	ENSG00000178904	tier1	-	-	86	0	0.00	31	35	53.03	103	0	0.00	71	65	47.79
NOS1	0	genome.wustl.edu	37	12	117672496	117672496	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A7EN-01A-11D-A38Z-09	TCGA-DX-A7EN-11A-11D-A38Z-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0a84adb8-cf08-4b90-87b1-f83b1bfd708d	80559ba7-da24-409e-83d1-cb19b30cd06f	12	117672496	117672496	G	T	SNP	NOS1	ENST00000317775	human	ensembl	74_37	-1	known	missense	c.3109	p.H1037N	1.000	pfam_FAD-binding_1,superfamily_Riboflavin_synthase-like_b-brl,pirsf_NOS_euk,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/D-bd,pfam_PDZ,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,superfamily_PDZ,smart_PDZ,pirsf_NOS_euk,pfscan_PDZ,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS1	HGNC	ENSG00000089250	tier1	-	-	102	0	0.00	56	37	39.78	39	0	0.00	35	33	48.53
KCNV1	0	genome.wustl.edu	37	8	110984849	110984849	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A7EN-01A-11D-A38Z-09	TCGA-DX-A7EN-11A-11D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0a84adb8-cf08-4b90-87b1-f83b1bfd708d	80559ba7-da24-409e-83d1-cb19b30cd06f	8	110984849	110984849	C	T	SNP	KCNV1	ENST00000297404	human	ensembl	74_37	-1	known	missense	c.629	p.R210H	1.000	prints_K_chnl,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv4	pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv8,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv4	-	no_errors	KCNV1	HGNC	ENSG00000164794	tier1	-	-	65	0	0.00	18	11	37.93	69	0	0.00	57	47	45.19
MCF2L2	0	genome.wustl.edu	37	3	182994710	182994710	+	Silent	SNP	C	C	T			TCGA-DX-A7EN-01A-11D-A38Z-09	TCGA-DX-A7EN-11A-11D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0a84adb8-cf08-4b90-87b1-f83b1bfd708d	80559ba7-da24-409e-83d1-cb19b30cd06f	3	182994710	182994710	C	T	SNP	MCF2L2	ENST00000328913	human	ensembl	74_37	-1	known	silent	c.1812	p.G604	0.000	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	MCF2L2	HGNC	ENSG00000053524	tier1	-	-	135	0	0.00	66	46	41.07	50	0	0.00	40	33	45.21
ENSG00000272885	0	genome.wustl.edu	37	4	410222	410222	+	R	SNP	G	G	A			TCGA-DX-A7EN-01A-11D-A38Z-09	TCGA-DX-A7EN-11A-11D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0a84adb8-cf08-4b90-87b1-f83b1bfd708d	80559ba7-da24-409e-83d1-cb19b30cd06f	4	410222	410222	G	A	SNP	ENSG00000272885	ENST00000609771	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.014	-	-	-	no_errors	RP11-2H3.6	Clone_based_vega_gene	ENSG00000272885	tier1	-	-	31	0	0.00	18	6	25.00	42	0	0.00	20	12	37.50
DYNC2H1	0	genome.wustl.edu	37	11	103173848	103173848	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A7EN-01A-11D-A38Z-09	TCGA-DX-A7EN-11A-11D-A38Z-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0a84adb8-cf08-4b90-87b1-f83b1bfd708d	80559ba7-da24-409e-83d1-cb19b30cd06f	11	103173848	103173848	C	G	SNP	DYNC2H1	ENST00000398093	human	ensembl	74_37	+1	known	missense	c.11143	p.L3715V	1.000	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240	tier1	-	-	153	0	0.00	82	69	45.70	42	0	0.00	33	20	37.74
DYRK4	0	genome.wustl.edu	37	12	4708298	4708298	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A7EN-01A-11D-A38Z-09	TCGA-DX-A7EN-11A-11D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0a84adb8-cf08-4b90-87b1-f83b1bfd708d	80559ba7-da24-409e-83d1-cb19b30cd06f	12	4708298	4708298	C	T	SNP	DYRK4	ENST00000010132	human	ensembl	74_37	+1	known	missense	c.665	p.S222L	0.998	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	DYRK4	HGNC	ENSG00000010219	tier1	-	-	72	0	0.00	12	31	72.09	70	0	0.00	14	44	75.86
PCDH11X	0	genome.wustl.edu	37	X	91642819	91642819	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A7EN-01A-11D-A38Z-09	TCGA-DX-A7EN-11A-11D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0a84adb8-cf08-4b90-87b1-f83b1bfd708d	80559ba7-da24-409e-83d1-cb19b30cd06f	X	91642819	91642819	G	A	SNP	PCDH11X	ENST00000373094	human	ensembl	74_37	+1	known	missense	c.3230	p.S1077N	0.862	NULL	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH11X	HGNC	ENSG00000102290	tier1	-	-	87	0	0.00	29	35	54.69	63	0	0.00	53	48	47.52
DH5	0	genome.wustl.edu	37	5	13911598	13911598	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A7EN-01A-11D-A38Z-09	TCGA-DX-A7EN-11A-11D-A38Z-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0a84adb8-cf08-4b90-87b1-f83b1bfd708d	80559ba7-da24-409e-83d1-cb19b30cd06f	5	13911598	13911598	A	G	SNP	DH5	ENST00000265104	human	ensembl	74_37	-1	known	missense	c.1541	p.I514T	1.000	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DH5	HGNC	ENSG00000039139	tier1	-	-	111	0	0.00	45	135	75.00	58	0	0.00	39	140	78.21
OR5B3	0	genome.wustl.edu	37	11	58170846	58170846	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A7EN-01A-11D-A38Z-09	TCGA-DX-A7EN-11A-11D-A38Z-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0a84adb8-cf08-4b90-87b1-f83b1bfd708d	80559ba7-da24-409e-83d1-cb19b30cd06f	11	58170846	58170846	G	C	SNP	OR5B3	ENST00000309403	human	ensembl	74_37	-1	known	missense	c.37	p.L13V	0.029	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5B3	HGNC	ENSG00000172769	tier1	-	-	53	0	0.00	19	12	38.71	126	0	0.00	72	68	48.57
CENPH	0	genome.wustl.edu	37	5	68490472	68490472	+	Splice_Site	SNP	A	A	C			TCGA-DX-A7EN-01A-11D-A38Z-09	TCGA-DX-A7EN-11A-11D-A38Z-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0a84adb8-cf08-4b90-87b1-f83b1bfd708d	80559ba7-da24-409e-83d1-cb19b30cd06f	5	68490472	68490472	A	C	SNP	CENPH	ENST00000283006	human	ensembl	74_37	+1	known	splice_site	c.191-2	e3-2	1.000	-	-	-	no_errors	CENPH	HGNC	ENSG00000153044	tier1	-	-	142	0	0.00	66	62	48.44	68	0	0.00	88	51	36.69
CHL1	0	genome.wustl.edu	37	3	403486	403486	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A7EN-01A-11D-A38Z-09	TCGA-DX-A7EN-11A-11D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0a84adb8-cf08-4b90-87b1-f83b1bfd708d	80559ba7-da24-409e-83d1-cb19b30cd06f	3	403486	403486	G	A	SNP	CHL1	ENST00000256509	human	ensembl	74_37	+1	known	missense	c.1411	p.V471M	0.627	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CHL1	HGNC	ENSG00000134121	tier1	-	-	82	0	0.00	35	39	52.70	101	1	0.98	70	71	50.35
TIMP2	0	genome.wustl.edu	37	17	76867051	76867051	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A7EN-01A-11D-A38Z-09	TCGA-DX-A7EN-11A-11D-A38Z-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0a84adb8-cf08-4b90-87b1-f83b1bfd708d	80559ba7-da24-409e-83d1-cb19b30cd06f	17	76867051	76867051	T	C	SNP	TIMP2	ENST00000262768	human	ensembl	74_37	-1	known	missense	c.269	p.Y90C	1.000	pfam_Prot_inh_TIMP,superfamily_TIMP-like_OB-fold,smart_Prot_inh_TIMP,pfscan_Netrin_domain	pfam_Prot_inh_TIMP,superfamily_TIMP-like_OB-fold,smart_Prot_inh_TIMP,pfscan_Netrin_domain	-	no_errors	TIMP2	HGNC	ENSG00000035862	tier1	-	-	57	0	0.00	23	37	61.67	45	0	0.00	36	51	58.62
PORCN	0	genome.wustl.edu	37	X	48372971	48372971	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A7EN-01A-11D-A38Z-09	TCGA-DX-A7EN-11A-11D-A38Z-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0a84adb8-cf08-4b90-87b1-f83b1bfd708d	80559ba7-da24-409e-83d1-cb19b30cd06f	X	48372971	48372971	G	T	SNP	PORCN	ENST00000326194	human	ensembl	74_37	+1	known	missense	c.904	p.V302F	1.000	pfam_MBOAT_fam	pfam_MBOAT_fam	-	no_errors	PORCN	HGNC	ENSG00000102312	tier1	-	-	110	0	0.00	75	40	34.78	96	0	0.00	101	56	35.44
AZI2	0	genome.wustl.edu	37	3	28364646	28364646	+	R	SNP	G	G	T			TCGA-DX-A7EN-01A-11D-A38Z-09	TCGA-DX-A7EN-11A-11D-A38Z-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0a84adb8-cf08-4b90-87b1-f83b1bfd708d	80559ba7-da24-409e-83d1-cb19b30cd06f	3	28364646	28364646	G	T	SNP	AZI2	ENST00000295748	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.517	-	-	-	no_errors	AZI2	HGNC	ENSG00000163512	tier1	-	-	23	0	0.00	11	9	45.00	43	0	0.00	40	28	41.18
SYT16	0	genome.wustl.edu	37	14	62542040	62542040	+	Silent	SNP	G	G	A			TCGA-DX-A7EN-01A-11D-A38Z-09	TCGA-DX-A7EN-11A-11D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0a84adb8-cf08-4b90-87b1-f83b1bfd708d	80559ba7-da24-409e-83d1-cb19b30cd06f	14	62542040	62542040	G	A	SNP	SYT16	ENST00000446982	human	ensembl	74_37	+1	known	silent	c.924	p.E308	0.982	NULL	NULL	-	no_errors	SYT16	HGNC	ENSG00000139973	tier1	-	-	35	0	0.00	28	20	41.67	68	0	0.00	46	35	43.21
ENSG00000243175	0	genome.wustl.edu	37	4	144346345	144346345	+	R	SNP	T	T	A			TCGA-DX-A7EN-01A-11D-A38Z-09	TCGA-DX-A7EN-11A-11D-A38Z-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0a84adb8-cf08-4b90-87b1-f83b1bfd708d	80559ba7-da24-409e-83d1-cb19b30cd06f	4	144346345	144346345	T	A	SNP	ENSG00000243175	ENST00000494591	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-58H15.1	Clone_based_vega_gene	ENSG00000243175	tier1	-	-	25	0	0.00	13	16	55.17	10	0	0.00	18	3	14.29
CEP290	0	genome.wustl.edu	37	12	88457822	88457822	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A7EN-01A-11D-A38Z-09	TCGA-DX-A7EN-11A-11D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0a84adb8-cf08-4b90-87b1-f83b1bfd708d	80559ba7-da24-409e-83d1-cb19b30cd06f	12	88457822	88457822	G	A	SNP	CEP290	ENST00000309041	human	ensembl	74_37	-1	known	missense	c.6212	p.S2071L	1.000	NULL	NULL	-	no_errors	CEP290	HGNC	ENSG00000198707	tier1	-	-	145	1	0.68	82	64	43.84	85	0	0.00	66	33	33.33
GOLM1	0	genome.wustl.edu	37	9	88650294	88650294	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A7EN-01A-11D-A38Z-09	TCGA-DX-A7EN-11A-11D-A38Z-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0a84adb8-cf08-4b90-87b1-f83b1bfd708d	80559ba7-da24-409e-83d1-cb19b30cd06f	9	88650294	88650294	G	C	SNP	GOLM1	ENST00000388711	human	ensembl	74_37	-1	known	missense	c.1004	p.A335G	0.001	NULL	NULL	-	no_errors	GOLM1	HGNC	ENSG00000135052	tier1	-	-	58	0	0.00	31	24	43.64	56	0	0.00	52	45	46.39
TP53	0	genome.wustl.edu	37	17	7578242	7578242	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A7EN-01A-11D-A38Z-09	TCGA-DX-A7EN-11A-11D-A38Z-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0a84adb8-cf08-4b90-87b1-f83b1bfd708d	80559ba7-da24-409e-83d1-cb19b30cd06f	17	7578242	7578242	C	A	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.607	p.V203L	0.809	pfam_p53_D-bd,superfamily_p53-like_TF_D-bd	pfam_p53_D-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_D-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	-	-	69	0	0.00	37	36	49.32	84	1	1.18	77	63	45.00
ENSG00000272885	0	genome.wustl.edu	37	4	410242	410242	+	R	SNP	G	G	C			TCGA-DX-A7EN-01A-11D-A38Z-09	TCGA-DX-A7EN-11A-11D-A38Z-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0a84adb8-cf08-4b90-87b1-f83b1bfd708d	80559ba7-da24-409e-83d1-cb19b30cd06f	4	410242	410242	G	C	SNP	ENSG00000272885	ENST00000609771	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.245	-	-	-	no_errors	RP11-2H3.6	Clone_based_vega_gene	ENSG00000272885	tier1	-	-	39	0	0.00	18	13	41.94	39	0	0.00	19	13	40.62
ENSG00000223291	0	genome.wustl.edu	37	6	12753947	12753947	+	R	SNP	T	T	C			TCGA-DX-A7EN-01A-11D-A38Z-09	TCGA-DX-A7EN-11A-11D-A38Z-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0a84adb8-cf08-4b90-87b1-f83b1bfd708d	80559ba7-da24-409e-83d1-cb19b30cd06f	6	12753947	12753947	T	C	SNP	ENSG00000223291	ENST00000411359	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.038	-	-	-	no_errors	AL354680.1	Clone_based_ensembl_gene	ENSG00000223291	tier1	-	-	96	0	0.00	24	33	57.89	96	0	0.00	79	68	46.26
OR2J3	0	genome.wustl.edu	37	6	29080103	29080103	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A7EN-01A-11D-A38Z-09	TCGA-DX-A7EN-11A-11D-A38Z-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0a84adb8-cf08-4b90-87b1-f83b1bfd708d	80559ba7-da24-409e-83d1-cb19b30cd06f	6	29080103	29080103	C	G	SNP	OR2J3	ENST00000377169	human	ensembl	74_37	+1	known	missense	c.436	p.L146V	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2J3	HGNC	ENSG00000204701	tier1	-	-	54	0	0.00	29	34	53.97	58	0	0.00	45	53	54.08
RB1	0	genome.wustl.edu	37	13	49033886	49033886	+	Nonsense_Mutation	SNP	G	G	T			TCGA-DX-A7EN-01A-11D-A38Z-09	TCGA-DX-A7EN-11A-11D-A38Z-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0a84adb8-cf08-4b90-87b1-f83b1bfd708d	80559ba7-da24-409e-83d1-cb19b30cd06f	13	49033886	49033886	G	T	SNP	RB1	ENST00000267163	human	ensembl	74_37	+1	known	nonsense	c.2023	p.E675*	1.000	pfam_RB_B,superfamily_Cyclin-like,smart_Cyclin-like	pfam_RB_C,pfam_RB_A,pfam_RB_B,pfam_RB_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	RB1	HGNC	ENSG00000139687	tier1	rs137853295	-	123	0	0.00	3	37	92.50	116	0	0.00	1	52	98.11
RIPK4	0	genome.wustl.edu	37	21	43161219	43161219	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A7EN-01A-11D-A38Z-09	TCGA-DX-A7EN-11A-11D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0a84adb8-cf08-4b90-87b1-f83b1bfd708d	80559ba7-da24-409e-83d1-cb19b30cd06f	21	43161219	43161219	C	T	SNP	RIPK4	ENST00000352483	human	ensembl	74_37	-1	known	missense	c.2278	p.A760T	0.024	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_dom,prints_Ankyrin_rpt,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RIPK4	HGNC	ENSG00000183421	tier1	rs199540981	GMAF=0.0005	37	0	0.00	10	23	69.70	7	0	0.00	7	10	58.82
SEC61A2	0	genome.wustl.edu	37	10	12203044	12203044	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A7EN-01A-11D-A38Z-09	TCGA-DX-A7EN-11A-11D-A38Z-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0a84adb8-cf08-4b90-87b1-f83b1bfd708d	80559ba7-da24-409e-83d1-cb19b30cd06f	10	12203044	12203044	A	G	SNP	SEC61A2	ENST00000298428	human	ensembl	74_37	+1	known	missense	c.1091	p.Y364C	1.000	pfam_SecY/SEC61-alpha,superfamily_SecY_su_dom,pirsf_SecY/SEC61-alpha,tigrfam_SecY/SEC61-alpha	pfam_SecY/SEC61-alpha,pfam_Translocon_Sec61/SecY_plug_dom,superfamily_SecY_su_dom,pirsf_SecY/SEC61-alpha,tigrfam_SecY/SEC61-alpha	-	no_errors	SEC61A2	HGNC	ENSG00000065665	tier1	-	-	48	0	0.00	0	24	100.00	100	0	0.00	1	53	98.15
ZDHHC8P1	0	genome.wustl.edu	37	22	23742153	23742153	+	R	SNP	G	G	T			TCGA-DX-A7EN-01A-11D-A38Z-09	TCGA-DX-A7EN-11A-11D-A38Z-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0a84adb8-cf08-4b90-87b1-f83b1bfd708d	80559ba7-da24-409e-83d1-cb19b30cd06f	22	23742153	23742153	G	T	SNP	ZDHHC8P1	ENST00000255890	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.957	-	-	-	no_errors	ZDHHC8P1	HGNC	ENSG00000133519	tier1	-	-	43	0	0.00	29	37	56.06	17	0	0.00	5	8	61.54
LAG3	0	genome.wustl.edu	37	12	6882880	6882880	+	Frame_Shift_Del	DEL	C	C	-			TCGA-DX-A7EN-01A-11D-A38Z-09	TCGA-DX-A7EN-11A-11D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0a84adb8-cf08-4b90-87b1-f83b1bfd708d	80559ba7-da24-409e-83d1-cb19b30cd06f	12	6882880	6882880	C	-	DEL	LAG3	ENST00000203629	human	ensembl	74_37	+1	known	frame_shift_del	c.224	p.G77fs	0.000	smart_Ig_sub	smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	LAG3	HGNC	ENSG00000089692	tier1			16	0	0.00	7	2	22.22	19	0	0.00	6	0	0.00
ENSG00000261393	0	genome.wustl.edu	37	16	50402555	50402555	+	R	SNP	C	C	A			TCGA-DX-A7EN-01A-11D-A38Z-09	TCGA-DX-A7EN-11A-11D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0a84adb8-cf08-4b90-87b1-f83b1bfd708d	80559ba7-da24-409e-83d1-cb19b30cd06f	16	50402555	50402555	C	A	SNP	ENSG00000261393	ENST00000568427	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	RP11-21B23.1	Clone_based_vega_gene	ENSG00000261393	tier1	-	-	26	0	0.00	4	14	73.68	0	0	0.00	0	0	0.00
INF2	0	genome.wustl.edu	37	14	105173863	105173874	+	In_Frame_Del	DEL	CCCCACCCCCAC	CCCCACCCCCAC	-			TCGA-DX-A7EN-01A-11D-A38Z-09	TCGA-DX-A7EN-11A-11D-A38Z-09	CCCCACCCCCAC	CCCCACCCCCAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0a84adb8-cf08-4b90-87b1-f83b1bfd708d	80559ba7-da24-409e-83d1-cb19b30cd06f	14	105173863	105173874	CCCCACCCCCAC	-	DEL	INF2	ENST00000392634	human	ensembl	74_37	+1	known	in_frame_del	c.1259_1270	p.PPPP424in_frame_del	0.431:0.313:0.918:0.874:0.812:0.982:0.976:0.941:0.992:0.945:0.221:0.238	NULL	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,pfam_WH2_dom,superfamily_ARM-type_fold,smart_FH2_Formin,pfscan_WH2_dom	-	no_errors	INF2	HGNC	ENSG00000203485	tier1			1	0	0.00	1	0	0.00	1	0	0.00	1	0	0.00
LOC101927060	0	genome.wustl.edu	37	17	45177320	45177321	+	R	INS	-	-	CGGCCC			TCGA-DX-A7EN-01A-11D-A38Z-09	TCGA-DX-A7EN-11A-11D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0a84adb8-cf08-4b90-87b1-f83b1bfd708d	80559ba7-da24-409e-83d1-cb19b30cd06f	17	45177320	45177321	-	CGGCCC	INS	LOC101927060	ENST00000571665	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.380:0.408	-	-	-	no_errors	RP11-156P1.3	Clone_based_vega_gene	ENSG00000262879	tier1			0	0	0.00	3	1	25.00	0	0	0.00	3	1	25.00
MIR3118-4	0	genome.wustl.edu	37	15	21038172	21038172	+	R	SNP	C	C	G			TCGA-DX-A7EN-01A-11D-A38Z-09	TCGA-DX-A7EN-11A-11D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0a84adb8-cf08-4b90-87b1-f83b1bfd708d	80559ba7-da24-409e-83d1-cb19b30cd06f	15	21038172	21038172	C	G	SNP	MIR3118-4	ENST00000584700	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MIR3118-4	HGNC	ENSG00000265322	tier1	-	-	19	0	0.00	10	4	28.57	3	0	0.00	0	0	0.00
CEL	0	genome.wustl.edu	37	9	135946015	135946015	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A7EN-01A-11D-A38Z-09	TCGA-DX-A7EN-11A-11D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0a84adb8-cf08-4b90-87b1-f83b1bfd708d	80559ba7-da24-409e-83d1-cb19b30cd06f	9	135946015	135946015	T	C	SNP	CEL	ENST00000372080	human	ensembl	74_37	+1	known	missense	c.1463	p.I488T	1.000	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CEL	HGNC	ENSG00000170835	tier1	rs77696629	-	45	0	0.00	49	8	14.04	64	0	0.00	77	3	3.75
