Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
KLHL33	0	genome.wustl.edu	37	14	20898562	20898562	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	14	20898562	20898562	C	G	SNP	KLHL33	ENST00000344581	human	ensembl	74_37	-1	known	missense	c.273	p.W91C	0.954	pfam_BACK,smart_BACK	pfam_Kelch_1,pfam_Kelch_2,pfam_BACK,superfamily_BTB/POZ_fold,smart_BACK,smart_Kelch_1	-	no_errors	KLHL33	HGNC	ENSG00000185271	tier1	-	-	24	0	0.00	34	7	17.07	62	0	0.00	75	14	15.73
DOCK11	0	genome.wustl.edu	37	X	117744376	117744376	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	X	117744376	117744376	C	A	SNP	DOCK11	ENST00000276202	human	ensembl	74_37	+1	known	missense	c.3091	p.L1031M	0.998	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK11	HGNC	ENSG00000147251	tier1	-	-	59	0	0.00	44	6	12.00	30	0	0.00	60	8	11.76
DYNC1I2	0	genome.wustl.edu	37	2	172602373	172602373	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	2	172602373	172602373	A	G	SNP	DYNC1I2	ENST00000397119	human	ensembl	74_37	+1	known	missense	c.1739	p.H580R	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Dynein_IC_1/2,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DYNC1I2	HGNC	ENSG00000077380	tier1	-	-	85	0	0.00	46	13	22.03	79	0	0.00	66	13	16.46
PTPN3	0	genome.wustl.edu	37	9	112172683	112172683	+	Silent	SNP	C	C	T			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	9	112172683	112172683	C	T	SNP	PTPN3	ENST00000374541	human	ensembl	74_37	-1	known	silent	c.1326	p.E442	1.000	pirsf_Tyr_Pase_non-rcpt_typ-3/4	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_PDZ,pfam_Dual-sp_phosphatase_cat-dom,superfamily_FERM_central,superfamily_PDZ,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-3/4,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,prints_Ez/rad/moesin_like,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN3	HGNC	ENSG00000070159	tier1	-	-	51	0	0.00	32	75	70.09	100	0	0.00	103	63	37.95
KDM2A	0	genome.wustl.edu	37	11	67013488	67013488	+	Silent	SNP	C	C	T			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	11	67013488	67013488	C	T	SNP	KDM2A	ENST00000529006	human	ensembl	74_37	+1	known	silent	c.1866	p.L622	0.997	superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	pfam_Znf_CXXC,pfam_F-box_dom,pfam_JmjC_dom,superfamily_Znf_FYVE_PHD,smart_JmjC_dom,smart_Znf_PHD,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KDM2A	HGNC	ENSG00000173120	tier1	-	-	48	0	0.00	25	10	28.57	69	0	0.00	83	26	23.85
SATB1	0	genome.wustl.edu	37	3	18390964	18390964	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	3	18390964	18390964	G	A	SNP	SATB1	ENST00000417717	human	ensembl	74_37	-1	known	nonsense	c.2086	p.Q696*	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_D-bd_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	SATB1	HGNC	ENSG00000182568	tier1	-	-	82	0	0.00	57	12	17.39	65	1	1.52	62	10	13.89
MAB21L3	0	genome.wustl.edu	37	1	116675980	116675980	+	Silent	SNP	G	G	A			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	1	116675980	116675980	G	A	SNP	MAB21L3	ENST00000369500	human	ensembl	74_37	+1	known	silent	c.1083	p.P361	0.628	NULL	pfam_Mab-21_dom	-	no_errors	MAB21L3	HGNC	ENSG00000173212	tier1	-	-	84	0	0.00	94	12	11.32	67	0	0.00	41	17	29.31
PSRC1	0	genome.wustl.edu	37	1	109823657	109823657	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	1	109823657	109823657	G	A	SNP	PSRC1	ENST00000409138	human	ensembl	74_37	-1	known	missense	c.736	p.P246S	0.000	NULL	NULL	-	no_errors	PSRC1	HGNC	ENSG00000134222	tier1	-	-	54	0	0.00	54	20	27.03	31	0	0.00	31	21	40.38
PABPC4	0	genome.wustl.edu	37	1	40030432	40030432	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	1	40030432	40030432	G	A	SNP	PABPC4	ENST00000372858	human	ensembl	74_37	-1	known	missense	c.1259	p.P420L	1.000	tigrfam_PABP_1234	pfam_RRM_dom,pfam_PABP_HYD,superfamily_PABP_HYD,smart_RRM_dom,smart_RRM_dom_euk,smart_PABP_HYD,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC4	HGNC	ENSG00000090621	tier1	-	-	42	0	0.00	33	8	19.51	87	0	0.00	78	25	24.27
EIF4A2	0	genome.wustl.edu	37	3	186504939	186504939	+	Missense_Mutation	SNP	T	T	G			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	3	186504939	186504939	T	G	SNP	EIF4A2	ENST00000440191	human	ensembl	74_37	+1	known	missense	c.798	p.C266W	1.000	superfamily_P-loop_NTPase,pfscan_Helicase_C	pfam_D/R_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_R_helicase_DEAD_Q_motif	-	no_errors	EIF4A2	HGNC	ENSG00000156976	tier1	-	-	95	0	0.00	65	12	15.58	30	0	0.00	34	4	10.53
PAQR5	0	genome.wustl.edu	37	15	69652383	69652383	+	R	SNP	C	C	T			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	15	69652383	69652383	C	T	SNP	PAQR5	ENST00000561027	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PAQR5	HGNC	ENSG00000137819	tier1	-	-	46	0	0.00	27	7	20.59	46	0	0.00	48	12	20.00
ST6GALC5	0	genome.wustl.edu	37	1	77528785	77528785	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	1	77528785	77528785	G	A	SNP	ST6GALC5	ENST00000477717	human	ensembl	74_37	+1	known	missense	c.905	p.R302Q	0.983	pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST6GALC5	HGNC	ENSG00000117069	tier1	-	-	89	0	0.00	57	18	24.00	95	0	0.00	74	25	25.25
TRO	0	genome.wustl.edu	37	X	54956774	54956774	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	X	54956774	54956774	A	G	SNP	TRO	ENST00000173898	human	ensembl	74_37	+1	known	missense	c.3617	p.N1206S	0.015	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	TRO	HGNC	ENSG00000067445	tier1	-	-	24	0	0.00	24	11	31.43	105	0	0.00	97	21	17.80
APOA5	0	genome.wustl.edu	37	11	116661095	116661095	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	11	116661095	116661095	G	A	SNP	APOA5	ENST00000227665	human	ensembl	74_37	-1	known	nonsense	c.850	p.R284*	0.960	pfam_ApoA1_A4_E	pfam_ApoA1_A4_E	-	no_errors	APOA5	HGNC	ENSG00000110243	tier1	-	-	40	0	0.00	36	12	25.00	22	0	0.00	34	8	19.05
VIT	0	genome.wustl.edu	37	2	36986282	36986282	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	2	36986282	36986282	G	T	SNP	VIT	ENST00000457137	human	ensembl	74_37	+1	known	missense	c.580	p.G194C	0.000	NULL	pfam_LCCL,superfamily_LCCL,smart_LCCL,pfscan_LCCL	-	no_errors	VIT	HGNC	ENSG00000205221	tier1	-	-	43	0	0.00	23	8	25.81	107	0	0.00	71	20	21.98
GLIPR1L1	0	genome.wustl.edu	37	12	75737700	75737700	+	Silent	SNP	C	C	G			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	12	75737700	75737700	C	G	SNP	GLIPR1L1	ENST00000378695	human	ensembl	74_37	+1	known	silent	c.402	p.V134	0.031	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_V5_allergen	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1,prints_V5_allergen	-	no_errors	GLIPR1L1	HGNC	ENSG00000173401	tier1	-	-	91	0	0.00	92	166	64.34	39	0	0.00	71	147	66.82
HYDIN	0	genome.wustl.edu	37	16	71196449	71196449	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	16	71196449	71196449	T	A	SNP	HYDIN	ENST00000448089	human	ensembl	74_37	-1	known	missense	c.701	p.H234L	1.000	superfamily_PapD-like	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423	tier1	-	-	73	0	0.00	48	10	17.24	49	0	0.00	35	12	25.53
KCNH2	0	genome.wustl.edu	37	7	150647132	150647132	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	7	150647132	150647132	G	A	SNP	KCNH2	ENST00000430723	human	ensembl	74_37	-1	known	missense	c.2522	p.P841L	0.080	smart_cNMP-bd_dom	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold,pfam_PAS_fold_3,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,tigrfam_PAS	-	no_errors	KCNH2	HGNC	ENSG00000055118	tier1	-	-	75	0	0.00	51	12	19.05	21	0	0.00	25	9	26.47
PSMD1	0	genome.wustl.edu	37	2	231937071	231937071	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	2	231937071	231937071	A	G	SNP	PSMD1	ENST00000308696	human	ensembl	74_37	+1	known	missense	c.823	p.I275V	0.996	superfamily_ARM-type_fold,pirsf_26S_Psome_Rpn2	pfam_Proteasome/cyclosome_rpt,superfamily_ARM-type_fold,pirsf_26S_Psome_Rpn2	-	no_errors	PSMD1	HGNC	ENSG00000173692	tier1	-	-	104	0	0.00	70	12	14.63	56	0	0.00	61	25	29.07
NUP107	0	genome.wustl.edu	37	12	69113363	69113363	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	12	69113363	69113363	G	C	SNP	NUP107	ENST00000229179	human	ensembl	74_37	+1	known	missense	c.1180	p.E394Q	1.000	pfam_Nup84_Nup100	pfam_Nup84_Nup100	-	no_errors	NUP107	HGNC	ENSG00000111581	tier1	-	-	58	0	0.00	77	54	41.22	59	0	0.00	67	53	44.17
MVP	0	genome.wustl.edu	37	16	29852944	29852944	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	16	29852944	29852944	A	G	SNP	MVP	ENST00000357402	human	ensembl	74_37	+1	known	missense	c.1219	p.M407V	1.000	NULL	pfam_Vault_N,pfam_MVP_shoulder	-	no_errors	MVP	HGNC	ENSG00000013364	tier1	-	-	39	0	0.00	32	5	13.51	39	0	0.00	28	8	22.22
CPM	0	genome.wustl.edu	37	12	69264130	69264130	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	12	69264130	69264130	C	T	SNP	CPM	ENST00000338356	human	ensembl	74_37	-1	known	missense	c.481	p.E161K	1.000	pfam_Peptidase_M14,pfam_Aste_AspA,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Aste_AspA,superfamily_CarboxyPept-like_regulatory,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPM	HGNC	ENSG00000135678	tier1	-	-	44	0	0.00	360	120	25.00	47	0	0.00	453	144	24.12
LRRK2	0	genome.wustl.edu	37	12	40704301	40704301	+	Silent	SNP	C	C	T			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	12	40704301	40704301	C	T	SNP	LRRK2	ENST00000298910	human	ensembl	74_37	+1	known	silent	c.4386	p.R1462	0.996	superfamily_P-loop_NTPase,smart_Small_GTPase_Rab_type,tigrfam_Small_GTP-bd_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906	tier1	-	-	30	0	0.00	72	9	11.11	60	0	0.00	142	10	6.58
ANGEL1	0	genome.wustl.edu	37	14	77275610	77275610	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	14	77275610	77275610	C	T	SNP	ANGEL1	ENST00000251089	human	ensembl	74_37	-1	known	nonsense	c.441	p.W147*	0.998	NULL	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	-	no_errors	ANGEL1	HGNC	ENSG00000013523	tier1	-	-	23	0	0.00	13	4	23.53	32	0	0.00	40	4	9.09
BMP10	0	genome.wustl.edu	37	2	69093564	69093564	+	Silent	SNP	G	G	A			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	2	69093564	69093564	G	A	SNP	BMP10	ENST00000295379	human	ensembl	74_37	-1	known	silent	c.474	p.Y158	0.820	pfam_TGF-b_N	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_asu	-	no_errors	BMP10	HGNC	ENSG00000163217	tier1	-	-	52	0	0.00	29	3	9.38	65	1	1.52	95	7	6.86
GPKOW	0	genome.wustl.edu	37	X	48973411	48973429	+	Frame_Shift_Del	DEL	CCTGCTGGGAGACAGGCCG	CCTGCTGGGAGACAGGCCG	-			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	CCTGCTGGGAGACAGGCCG	CCTGCTGGGAGACAGGCCG	CCTGCTGGGAGACAGGCCG	-	CCTGCTGGGAGACAGGCCG	CCTGCTGGGAGACAGGCCG	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	X	48973411	48973429	CCTGCTGGGAGACAGGCCG	-	DEL	GPKOW	ENST00000156109	human	ensembl	74_37	-1	known	frame_shift_del	c.886_868	p.R290fs	1.000:0.998:0.990:0.536:0.595:0.805:0.856:0.830:0.816:0.730:0.514:0.607:0.575:0.077:0.077:0.054:0.028:0.016:0.001	NULL	pfam_KOW,pfam_G_patch_dom,superfamily_Translation_prot_SH3-like,smart_G_patch_dom,smart_KOW,pfscan_G_patch_dom	-	no_errors	GPKOW	HGNC	ENSG00000068394	tier1			61	0	0.00	88	5	5.38	61	0	0.00	88	5	5.38
CCAR1	0	genome.wustl.edu	37	10	70531091	70531091	+	Silent	SNP	T	T	C			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	10	70531091	70531091	T	C	SNP	CCAR1	ENST00000265872	human	ensembl	74_37	+1	known	silent	c.2427	p.D809	0.932	NULL	pfam_SAP_dom,superfamily_-bd_OB-fold,smart_SAP_dom,pfscan_SAP_dom	-	no_errors	CCAR1	HGNC	ENSG00000060339	tier1	-	-	77	0	0.00	64	15	18.75	26	1	3.70	23	12	34.29
C16orf96	0	genome.wustl.edu	37	16	4643291	4643291	+	Silent	SNP	C	C	T			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	16	4643291	4643291	C	T	SNP	C16orf96	ENST00000444310	human	ensembl	74_37	+1	known	silent	c.2841	p.C947	0.844	NULL	NULL	-	no_errors	C16orf96	HGNC	ENSG00000205832	tier1	-	-	72	0	0.00	58	15	20.55	9	0	0.00	7	1	12.50
C22orf34	0	genome.wustl.edu	37	22	50017914	50017914	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	22	50017914	50017914	G	T	SNP	C22orf34	ENST00000444628	human	ensembl	74_37	-1	known	missense	c.547	p.L183I	0.078	NULL	NULL	-	no_errors	C22orf34	HGNC	ENSG00000188511	tier1	-	-	32	0	0.00	31	4	11.43	3	0	0.00	2	0	0.00
ENSG00000227175	0	genome.wustl.edu	37	10	13570579	13570584	+	R	DEL	GCGGCA	GCGGCA	-			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	GCGGCA	GCGGCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	10	13570579	13570584	GCGGCA	-	DEL	ENSG00000227175	ENST00000438431	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.013:0.012:0.010:0.008:0.006:0.003	-	-	-	no_errors	RP11-214D15.2	Clone_based_vega_gene	ENSG00000227175	tier1			0	0	0.00	0	0	0.00	0	0	0.00	0	0	0.00
ENSG00000232274	0	genome.wustl.edu	37	1	143210557	143210557	+	R	SNP	A	A	G			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	1	143210557	143210557	A	G	SNP	ENSG00000232274	ENST00000412204	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.012	-	-	-	no_errors	RP11-782C8.2	Clone_based_vega_gene	ENSG00000232274	tier1	-	-	34	0	0.00	24	4	14.29	1	0	0.00	1	0	0.00
ENSG00000273000	0	genome.wustl.edu	37	22	24037625	24037626	+	R	INS	-	-	CTGTTG			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	22	24037625	24037626	-	CTGTTG	INS	ENSG00000273000	ENST00000421064	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001:0.005	-	-	-	no_errors	KB-1572G7.2	Clone_based_vega_gene	ENSG00000273000	tier1			0	0	0.00	2	0	0.00	0	0	0.00	2	0	0.00
LINC00200	0	genome.wustl.edu	37	10	1205736	1205736	+	R	SNP	A	A	G			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	10	1205736	1205736	A	G	SNP	LINC00200	ENST00000425630	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.155	-	-	-	no_errors	LINC00200	HGNC	ENSG00000229205	tier1	rs60415666	-	22	0	0.00	22	5	18.52	0	0	0.00	0	0	0.00
TUBA4B	0	genome.wustl.edu	37	2	220118077	220118077	+	R	DEL	G	G	-			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	2	220118077	220118077	G	-	DEL	TUBA4B	ENST00000473885	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TUBA4B	HGNC	ENSG00000243910	tier1			14	0	0.00	13	4	23.53	4	0	0.00	0	0	0.00
CXADRP3	0	genome.wustl.edu	37	18	14478199	14478199	+	R	SNP	G	G	A			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	18	14478199	14478199	G	A	SNP	CXADRP3	ENST00000581457	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CXADRP3	HGNC	ENSG00000265766	tier1	-	-	62	0	0.00	44	11	20.00	2	0	0.00	3	2	40.00
TGM1	0	genome.wustl.edu	37	14	24723980	24723980	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	14	24723980	24723980	C	T	SNP	TGM1	ENST00000206765	human	ensembl	74_37	-1	known	missense	c.1978	p.V660M	1.000	pfam_Transglutaminase_C,superfamily_Transglutaminase_C	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM1	HGNC	ENSG00000092295	tier1	-	-	44	0	0.00	42	5	10.64	33	0	0.00	60	2	3.23
GS	0	genome.wustl.edu	37	20	57430245	57430245	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	20	57430245	57430245	C	T	SNP	GS	ENST00000371100	human	ensembl	74_37	+1	putative	missense	c.1925	p.A642V	0.333	NULL	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_S,prints_Gprotein_alpha_su	-	no_errors	GS	HGNC	ENSG00000087460	tier1	-	-	45	0	0.00	53	5	8.62	47	0	0.00	57	2	3.39
