Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
ACSBG2	0	genome.wustl.edu	37	19	6147680	6147680	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	19	6147680	6147680	G	C	SNP	ACSBG2	ENST00000252669	human	ensembl	74_37	+1	known	missense	c.291	p.L97F	0.284	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSBG2	HGNC	ENSG00000130377	tier1	-	-	31	0	0.00	38	5	11.63	20	0	0.00	39	6	13.33
GMIP	0	genome.wustl.edu	37	19	19746001	19746001	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	19	19746001	19746001	G	A	SNP	GMIP	ENST00000203556	human	ensembl	74_37	-1	known	missense	c.1582	p.R528C	1.000	smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	GMIP	HGNC	ENSG00000089639	tier1	-	-	23	0	0.00	33	17	34.00	112	0	0.00	82	26	24.07
FAM169A	0	genome.wustl.edu	37	5	74100335	74100335	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	5	74100335	74100335	T	A	SNP	FAM169A	ENST00000389156	human	ensembl	74_37	-1	known	missense	c.895	p.S299C	0.715	NULL	NULL	-	no_errors	FAM169A	HGNC	ENSG00000198780	tier1	-	-	45	0	0.00	34	5	12.82	94	0	0.00	81	13	13.83
DAPL1	0	genome.wustl.edu	37	2	159651908	159651908	+	Silent	SNP	G	G	C			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	2	159651908	159651908	G	C	SNP	DAPL1	ENST00000309950	human	ensembl	74_37	+1	known	silent	c.24	p.L8	0.967	NULL	NULL	-	no_errors	DAPL1	HGNC	ENSG00000163331	tier1	-	-	51	0	0.00	44	11	20.00	36	0	0.00	38	7	15.56
CNTP3	0	genome.wustl.edu	37	9	39085765	39085765	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	9	39085765	39085765	G	A	SNP	CNTP3	ENST00000297668	human	ensembl	74_37	-1	known	missense	c.3410	p.A1137V	0.993	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTP3	HGNC	ENSG00000106714	tier1	-	-	314	1	0.32	216	223	50.80	95	0	0.00	62	70	53.03
PCDHA5	0	genome.wustl.edu	37	5	140202746	140202746	+	Silent	SNP	C	C	T			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	5	140202746	140202746	C	T	SNP	PCDHA5	ENST00000529859	human	ensembl	74_37	+1	known	silent	c.1386	p.F462	0.919	pfam_Cadherin,superfamily_Cadherin-like,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA5	HGNC	ENSG00000204965	tier1	-	-	121	0	0.00	69	95	57.93	27	0	0.00	16	9	36.00
SLC52A3	0	genome.wustl.edu	37	20	746375	746375	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	20	746375	746375	C	A	SNP	SLC52A3	ENST00000217254	human	ensembl	74_37	-1	known	missense	c.44	p.G15V	1.000	NULL	pfam_Endogenous_retrovirus_rcpt	-	no_errors	SLC52A3	HGNC	ENSG00000101276	tier1	-	-	36	0	0.00	18	8	30.77	29	0	0.00	30	7	18.92
FRMD3	0	genome.wustl.edu	37	9	85863362	85863362	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	9	85863362	85863362	C	T	SNP	FRMD3	ENST00000304195	human	ensembl	74_37	-1	known	missense	c.1265	p.R422Q	0.000	NULL	pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	FRMD3	HGNC	ENSG00000172159	tier1	-	-	62	0	0.00	49	10	16.95	85	0	0.00	75	11	12.79
NRD1	0	genome.wustl.edu	37	1	52254982	52254982	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	1	52254982	52254982	T	C	SNP	NRD1	ENST00000354831	human	ensembl	74_37	-1	known	missense	c.3586	p.I1196V	0.022	NULL	pfam_Pept_M16_N,pfam_Peptidase_M16_C,superfamily_Metalloenz_LuxS/M16	-	no_errors	NRD1	HGNC	ENSG00000078618	tier1	-	-	38	0	0.00	41	46	52.87	110	0	0.00	75	45	37.19
KYNU	0	genome.wustl.edu	37	2	143798011	143798011	+	Silent	SNP	G	G	A			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	2	143798011	143798011	G	A	SNP	KYNU	ENST00000264170	human	ensembl	74_37	+1	known	silent	c.1056	p.A352	0.989	pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase,tigrfam_Kynureninase	pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase,tigrfam_Kynureninase	-	no_errors	KYNU	HGNC	ENSG00000115919	tier1	-	-	43	0	0.00	33	7	17.50	78	0	0.00	86	10	10.42
C12orf55	0	genome.wustl.edu	37	12	96900705	96900705	+	Splice_Site	SNP	G	G	A			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	12	96900705	96900705	G	A	SNP	C12orf55	ENST00000524981	human	ensembl	74_37	+1	putative	splice_site	c.568-1	e4-1	1.000	-	-	-	no_errors	C12orf55	HGNC	ENSG00000188596	tier1	-	-	73	0	0.00	51	31	37.80	90	0	0.00	49	31	38.75
KLHL3	0	genome.wustl.edu	37	5	137045465	137045465	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	5	137045465	137045465	C	T	SNP	KLHL3	ENST00000309755	human	ensembl	74_37	-1	known	missense	c.215	p.S72N	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL3	HGNC	ENSG00000146021	tier1	-	-	40	0	0.00	23	22	48.89	76	0	0.00	37	23	38.33
PCSK2	0	genome.wustl.edu	37	20	17339055	17339055	+	Silent	SNP	C	C	T			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	20	17339055	17339055	C	T	SNP	PCSK2	ENST00000262545	human	ensembl	74_37	+1	known	silent	c.366	p.N122	0.987	superfamily_Peptidase_S8/S53_dom	pfam_Peptidase_S8/S53_dom,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53_dom,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK2	HGNC	ENSG00000125851	tier1	-	-	71	0	0.00	35	7	16.67	72	0	0.00	87	20	18.69
SIGLEC5	0	genome.wustl.edu	37	19	52130427	52130427	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	19	52130427	52130427	A	T	SNP	SIGLEC5	ENST00000222107	human	ensembl	74_37	-1	known	missense	c.1357	p.C453S	0.004	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	SIGLEC5	HGNC	ENSG00000105501	tier1	-	-	43	0	0.00	22	22	50.00	86	0	0.00	47	29	38.16
ANKRD26	0	genome.wustl.edu	37	10	27335425	27335425	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	10	27335425	27335425	T	A	SNP	ANKRD26	ENST00000436985	human	ensembl	74_37	-1	known	missense	c.1890	p.E630D	0.000	NULL	pfam_DUF3496,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Polyketide_synth_docking,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD26	HGNC	ENSG00000107890	tier1	-	-	49	0	0.00	55	5	8.33	118	0	0.00	77	19	19.79
MAP3K4	0	genome.wustl.edu	37	6	161470949	161470949	+	Silent	SNP	C	C	T			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	6	161470949	161470949	C	T	SNP	MAP3K4	ENST00000392142	human	ensembl	74_37	+1	known	silent	c.1645	p.L549	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K4	HGNC	ENSG00000085511	tier1	-	-	40	0	0.00	23	20	46.51	114	0	0.00	60	66	52.38
GEMIN5	0	genome.wustl.edu	37	5	154287187	154287187	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	5	154287187	154287187	G	A	SNP	GEMIN5	ENST00000285873	human	ensembl	74_37	-1	known	missense	c.2359	p.R787W	0.054	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	GEMIN5	HGNC	ENSG00000082516	tier1	rs200476714	GMAF=0.0005	56	0	0.00	43	26	37.68	88	0	0.00	50	37	42.53
GLRA1	0	genome.wustl.edu	37	5	151231024	151231024	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	5	151231024	151231024	C	T	SNP	GLRA1	ENST00000455880	human	ensembl	74_37	-1	known	missense	c.839	p.R280H	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_Glycine_rcpt_A,prints_Glycine_rcpt_A1,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GLRA1	HGNC	ENSG00000145888	tier1	-	-	61	0	0.00	39	24	38.10	50	0	0.00	38	24	38.71
TNS3	0	genome.wustl.edu	37	7	47454731	47454731	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	7	47454731	47454731	C	G	SNP	TNS3	ENST00000311160	human	ensembl	74_37	-1	known	missense	c.547	p.V183L	0.971	pfam_Tensin_phosphatase_C2-dom,superfamily_C2_dom,smart_Tyr_Pase_cat,pfscan_Tensin_phosphatase_C2-dom	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_dom,smart_Tyr_Pase_cat,smart_SH2,smart_PTB/PI_dom,pfscan_SH2,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS3	HGNC	ENSG00000136205	tier1	-	-	61	0	0.00	57	10	14.93	116	0	0.00	123	22	15.07
NFKB1	0	genome.wustl.edu	37	4	103500090	103500090	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	4	103500090	103500090	G	A	SNP	NFKB1	ENST00000226574	human	ensembl	74_37	+1	known	missense	c.624	p.M208I	1.000	pfam_RHD,superfamily_p53-like_TF_D-bd,pfscan_RHD	pfam_RHD,pfam_Ankyrin_rpt,pfam_Death_domain,superfamily_p53-like_TF_D-bd,superfamily_Ankyrin_rpt-contain_dom,superfamily_Ig_E-set,superfamily_DEATH-like_dom,smart_IPT,smart_Ankyrin_rpt,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_RHD,prints_NF_Rel_Dor,prints_Ankyrin_rpt	-	no_errors	NFKB1	HGNC	ENSG00000109320	tier1	-	-	50	0	0.00	43	21	32.81	89	0	0.00	82	21	20.39
MRGPRF	0	genome.wustl.edu	37	11	68773521	68773521	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	11	68773521	68773521	G	C	SNP	MRGPRF	ENST00000309099	human	ensembl	74_37	-1	known	missense	c.257	p.A86G	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	MRGPRF	HGNC	ENSG00000172935	tier1	-	-	47	0	0.00	36	21	36.84	77	0	0.00	70	24	25.53
ZNF663P	0	genome.wustl.edu	37	20	45084777	45084777	+	R	SNP	A	A	G			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	20	45084777	45084777	A	G	SNP	ZNF663P	ENST00000400371	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZNF663P	HGNC	ENSG00000215452	tier1	-	-	59	0	0.00	75	24	24.24	69	0	0.00	143	30	17.34
LCT	0	genome.wustl.edu	37	2	136575391	136575391	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	2	136575391	136575391	G	T	SNP	LCT	ENST00000264162	human	ensembl	74_37	-1	known	missense	c.1227	p.S409R	1.000	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	LCT	HGNC	ENSG00000115850	tier1	-	-	64	0	0.00	39	29	42.65	46	0	0.00	45	29	39.19
ADAM28	0	genome.wustl.edu	37	8	24170916	24170916	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	8	24170916	24170916	G	T	SNP	ADAM28	ENST00000265769	human	ensembl	74_37	+1	known	missense	c.399	p.Q133H	0.367	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM28	HGNC	ENSG00000042980	tier1	-	-	60	0	0.00	56	15	21.13	120	0	0.00	106	19	15.08
CRYAA	0	genome.wustl.edu	37	21	44590745	44590745	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	21	44590745	44590745	G	A	SNP	CRYAA	ENST00000291554	human	ensembl	74_37	+1	known	missense	c.308	p.R103H	1.000	pfam_a-crystallin/Hsp20_dom,superfamily_HSP20-like_chaperone,pfscan_a-crystallin/Hsp20_dom,prints_Alpha-crystallin/HSP	pfam_a-crystallin/Hsp20_dom,pfam_Alpha-crystallin_N,superfamily_HSP20-like_chaperone,pfscan_a-crystallin/Hsp20_dom,prints_Alpha-crystallin/HSP	-	no_errors	CRYAA	HGNC	ENSG00000160202	tier1	-	-	55	0	0.00	42	14	25.00	56	0	0.00	31	8	20.51
MMRN1	0	genome.wustl.edu	37	4	90857734	90857734	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	4	90857734	90857734	A	T	SNP	MMRN1	ENST00000264790	human	ensembl	74_37	+1	known	missense	c.2903	p.E968V	0.148	NULL	pfam_C1q,pfam_EMI_domain,pfam_EG-like_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_C1q,prints_C1q,pfscan_C1q,pfscan_EG-like_dom,pfscan_EMI_domain	-	no_errors	MMRN1	HGNC	ENSG00000138722	tier1	-	-	41	0	0.00	26	37	58.73	145	0	0.00	85	65	43.33
TCHH	0	genome.wustl.edu	37	1	152084915	152084915	+	Silent	SNP	A	A	G			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	1	152084915	152084915	A	G	SNP	TCHH	ENST00000368804	human	ensembl	74_37	-1	known	silent	c.778	p.L260	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	TCHH	HGNC	ENSG00000159450	tier1	-	-	31	0	0.00	27	36	57.14	48	0	0.00	31	17	35.42
FBN2	0	genome.wustl.edu	37	5	127681117	127681117	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	5	127681117	127681117	G	A	SNP	FBN2	ENST00000262464	human	ensembl	74_37	-1	known	missense	c.3149	p.T1050M	0.006	pirsf_FBN,pfam_TB_dom,superfamily_TB_dom	pirsf_FBN,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Cadherin-like,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	FBN2	HGNC	ENSG00000138829	tier1	rs150506063	-	61	0	0.00	35	29	45.31	52	0	0.00	34	26	43.33
ADAMTS3	0	genome.wustl.edu	37	4	73414431	73414431	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	4	73414431	73414431	C	A	SNP	ADAMTS3	ENST00000286657	human	ensembl	74_37	-1	known	missense	c.268	p.D90Y	1.000	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS3	HGNC	ENSG00000156140	tier1	-	-	51	0	0.00	28	12	30.00	100	0	0.00	65	13	16.67
PTK2B	0	genome.wustl.edu	37	8	27288893	27288893	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	8	27288893	27288893	G	T	SNP	PTK2B	ENST00000397497	human	ensembl	74_37	+1	putative	missense	c.27	p.Q9H	0.000	pfscan_FERM_domain	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PTK2B	HGNC	ENSG00000120899	tier1	-	-	67	0	0.00	47	38	44.71	115	0	0.00	84	71	45.81
NEB	0	genome.wustl.edu	37	2	152582033	152582033	+	Silent	SNP	T	T	G			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	2	152582033	152582033	T	G	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	silent	c.336	p.P112	0.848	pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091	tier1	-	-	74	0	0.00	46	35	43.21	120	0	0.00	75	50	40.00
PYHIN1	0	genome.wustl.edu	37	1	158906932	158906932	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	1	158906932	158906932	C	A	SNP	PYHIN1	ENST00000368140	human	ensembl	74_37	+1	known	missense	c.232	p.L78I	0.000	pfam_DAPIN,superfamily_DEATH-like_dom,pfscan_DAPIN	pfam_HIN200/IF120x,pfam_DAPIN,superfamily_DEATH-like_dom,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	PYHIN1	HGNC	ENSG00000163564	tier1	-	-	43	0	0.00	54	8	12.90	51	0	0.00	97	23	19.17
LOXHD1	0	genome.wustl.edu	37	18	44057439	44057439	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	18	44057439	44057439	A	G	SNP	LOXHD1	ENST00000536736	human	ensembl	74_37	-1	known	missense	c.6632	p.V2211A	0.986	NULL	pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom	-	no_errors	LOXHD1	HGNC	ENSG00000167210	tier1	-	-	82	0	0.00	23	33	58.93	55	0	0.00	21	22	51.16
CABYR	0	genome.wustl.edu	37	18	21739532	21739532	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	18	21739532	21739532	C	T	SNP	CABYR	ENST00000399496	human	ensembl	74_37	+1	known	missense	c.638	p.P213L	1.000	NULL	pfam_cAMP_dep_PK_reg_su_I/II_a/b,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,smart_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	CABYR	HGNC	ENSG00000154040	tier1	rs143686609	-	58	0	0.00	3	33	91.67	49	0	0.00	12	21	63.64
MYLK	0	genome.wustl.edu	37	3	123457851	123457851	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	3	123457851	123457851	G	T	SNP	MYLK	ENST00000360304	human	ensembl	74_37	-1	known	missense	c.481	p.P161T	1.000	pfam_Ig_I-set,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	MYLK	HGNC	ENSG00000065534	tier1	-	-	58	0	0.00	62	26	29.55	120	0	0.00	93	43	31.39
OR4D1	0	genome.wustl.edu	37	17	56232674	56232674	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	17	56232674	56232674	C	T	SNP	OR4D1	ENST00000268912	human	ensembl	74_37	+1	known	missense	c.160	p.R54W	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4D1	HGNC	ENSG00000141194	tier1	-	-	78	0	0.00	80	20	20.00	84	0	0.00	78	20	20.41
KIAA0922	0	genome.wustl.edu	37	4	154547353	154547353	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	4	154547353	154547353	T	C	SNP	KIAA0922	ENST00000409959	human	ensembl	74_37	+1	known	missense	c.4100	p.L1367P	1.000	NULL	pfam_DUF3651_TMEM131	-	no_errors	KIAA0922	HGNC	ENSG00000121210	tier1	-	-	55	0	0.00	27	24	47.06	101	0	0.00	61	38	38.38
KSR2	0	genome.wustl.edu	37	12	118198926	118198926	+	Silent	SNP	C	C	T			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	12	118198926	118198926	C	T	SNP	KSR2	ENST00000339824	human	ensembl	74_37	-1	known	silent	c.876	p.P292	0.297	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	KSR2	HGNC	ENSG00000171435	tier1	-	-	83	0	0.00	82	15	15.46	36	0	0.00	33	7	17.50
MYLK	0	genome.wustl.edu	37	3	123457850	123457850	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	3	123457850	123457850	G	T	SNP	MYLK	ENST00000360304	human	ensembl	74_37	-1	known	missense	c.482	p.P161Q	1.000	pfam_Ig_I-set,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	MYLK	HGNC	ENSG00000065534	tier1	-	-	60	0	0.00	59	27	31.03	121	0	0.00	93	45	32.61
NR6A1	0	genome.wustl.edu	37	9	127316690	127316690	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	9	127316690	127316690	T	A	SNP	NR6A1	ENST00000487099	human	ensembl	74_37	-1	known	missense	c.302	p.N101I	1.000	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR6A1	HGNC	ENSG00000148200	tier1	-	-	25	0	0.00	38	6	13.64	99	0	0.00	101	20	16.53
SEL1L3	0	genome.wustl.edu	37	4	25783928	25783928	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	4	25783928	25783928	G	A	SNP	SEL1L3	ENST00000399878	human	ensembl	74_37	-1	known	missense	c.2393	p.A798V	0.996	pfam_Sel1-like,smart_Sel1-like	pfam_Sel1-like,superfamily_ConA-like_lec_gl_sf,smart_Sel1-like	-	no_errors	SEL1L3	HGNC	ENSG00000091490	tier1	-	-	58	0	0.00	52	19	26.76	88	0	0.00	49	24	32.88
DLEC1	0	genome.wustl.edu	37	3	38135096	38135096	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	3	38135096	38135096	G	T	SNP	DLEC1	ENST00000346219	human	ensembl	74_37	+1	known	missense	c.1757	p.G586V	0.999	NULL	superfamily_PapD-like	-	no_errors	DLEC1	HGNC	ENSG00000008226	tier1	-	-	53	0	0.00	46	13	22.03	95	0	0.00	77	9	10.34
CAND1	0	genome.wustl.edu	37	12	67663558	67663558	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	12	67663558	67663558	G	C	SNP	CAND1	ENST00000545606	human	ensembl	74_37	+1	known	missense	c.61	p.D21H	1.000	superfamily_ARM-type_fold	pfam_TATA-bd_TIP120,pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	CAND1	HGNC	ENSG00000111530	tier1	-	-	21	0	0.00	23	7	23.33	30	0	0.00	35	16	30.77
NBEAL1	0	genome.wustl.edu	37	2	203977921	203977921	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	2	203977921	203977921	T	C	SNP	NBEAL1	ENST00000449802	human	ensembl	74_37	+1	known	missense	c.2299	p.S767P	1.000	superfamily_ConA-like_lec_gl_sf	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL1	HGNC	ENSG00000144426	tier1	-	-	53	0	0.00	36	9	20.00	104	0	0.00	33	19	36.54
OR8B4	0	genome.wustl.edu	37	11	124294278	124294278	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	11	124294278	124294278	G	A	SNP	OR8B4	ENST00000356130	human	ensembl	74_37	-1	known	nonsense	c.490	p.R164*	0.747	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR8B4	HGNC	ENSG00000198657	tier1	-	-	16	0	0.00	7	15	68.18	52	0	0.00	15	58	79.45
ARSE	0	genome.wustl.edu	37	X	2876419	2876419	+	Silent	SNP	T	T	C			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	X	2876419	2876419	T	C	SNP	ARSE	ENST00000545496	human	ensembl	74_37	-1	known	silent	c.156	p.P52	0.000	NULL	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSE	HGNC	ENSG00000157399	tier1	-	-	12	0	0.00	31	11	26.19	44	0	0.00	38	21	35.59
MUC16	0	genome.wustl.edu	37	19	9047336	9047336	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	19	9047336	9047336	G	C	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.34295	p.T11432R	0.026	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143	tier1	-	-	48	0	0.00	68	7	9.33	81	0	0.00	66	14	17.50
ARID1A	0	genome.wustl.edu	37	1	27023189	27023189	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	1	27023189	27023189	G	T	SNP	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	missense	c.295	p.D99Y	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_D-bd,superfamily_ARID/BRIGHT_D-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_D-bd,pfscan_ARID/BRIGHT_D-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713	tier1	-	-	8	0	0.00	5	10	66.67	25	0	0.00	31	13	29.55
KIAA1407	0	genome.wustl.edu	37	3	113729865	113729865	+	Frame_Shift_Del	DEL	T	T	-			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	3	113729865	113729865	T	-	DEL	KIAA1407	ENST00000295878	human	ensembl	74_37	-1	known	frame_shift_del	c.1167	p.K389fs	1.000	NULL	NULL	-	no_errors	KIAA1407	HGNC	ENSG00000163617	tier1			26	0	0.00	32	8	20.00	118	0	0.00	166	33	16.58
TP53	0	genome.wustl.edu	37	17	7577514	7577515	+	Frame_Shift_Ins	INS	-	-	TA			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	-	-	-	TA	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	17	7577514	7577515	-	TA	INS	TP53	ENST00000269305	human	ensembl	74_37	-1	known	frame_shift_ins	c.767_766	p.T256fs	0.998:1.000	pfam_p53_D-bd,superfamily_p53-like_TF_D-bd,prints_p53_tumour_suppressor	pfam_p53_D-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_D-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1			50	0	0.00	14	38	73.08	87	0	0.00	14	57	80.28
SCUBE2	0	genome.wustl.edu	37	11	9101004	9101007	+	Frame_Shift_Del	DEL	CAAA	CAAA	-			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	CAAA	CAAA	CAAA	-	CAAA	CAAA	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	11	9101004	9101007	CAAA	-	DEL	SCUBE2	ENST00000457346	human	ensembl	74_37	-1	known	frame_shift_del	c.309_306	p.C102fs	1.000:1.000:1.000:1.000	smart_EGF-like_Ca-bd_dom,smart_EG-like_dom	pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_CUB_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	SCUBE2	HGNC	ENSG00000175356	tier1			38	0	0.00	34	13	27.66	115	0	0.00	41	38	48.10
RBM28	0	genome.wustl.edu	37	7	127950921	127950921	+	Frame_Shift_Del	DEL	A	A	-			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	7	127950921	127950921	A	-	DEL	RBM28	ENST00000223073	human	ensembl	74_37	-1	known	frame_shift_del	c.2209	p.Y737fs	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM28	HGNC	ENSG00000106344	tier1			54	0	0.00	49	8	14.04	122	0	0.00	76	23	23.23
LOC100132215	0	genome.wustl.edu	37	2	63273759	63273760	+	R	INS	-	-	T			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	2	63273759	63273760	-	T	INS	LOC100132215	ENST00000413549	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.091:0.111	-	-	-	no_errors	AC009501.4	Clone_based_vega_gene	ENSG00000231609	tier1			17	0	0.00	2	7	77.78	106	0	0.00	15	62	80.52
ENSG00000267040	0	genome.wustl.edu	37	18	55335786	55335787	+	R	INS	-	-	AAAAA			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	-	-	-	AAAAA	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	18	55335786	55335787	-	AAAAA	INS	ENSG00000267040	ENST00000592201	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.794:0.000	-	-	-	no_errors	RP11-35G9.3	Clone_based_vega_gene	ENSG00000267040	tier1			13	0	0.00	11	3	21.43	13	0	0.00	11	3	21.43
ATRX	0	genome.wustl.edu	37	X	76937049	76937053	+	Frame_Shift_Del	DEL	TAAAT	TAAAT	-			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	TAAAT	TAAAT	TAAAT	-	TAAAT	TAAAT	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	X	76937049	76937053	TAAAT	-	DEL	ATRX	ENST00000373344	human	ensembl	74_37	-1	known	frame_shift_del	c.3699_3695	p.N1232fs	1.000:1.000:0.995:0.993:0.994	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224	tier1			35	0	0.00	9	42	82.35	35	0	0.00	9	42	82.35
ENSG00000249034	0	genome.wustl.edu	37	5	140242769	140242769	+	Silent	SNP	C	C	T			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	5	140242769	140242769	C	T	SNP	ENSG00000249034	ENST00000502505	human	ensembl	74_37	-1	known	silent	c.207	p.T69	0.024	NULL	NULL	-	no_errors	AC005609.1	Clone_based_ensembl_gene	ENSG00000249034	tier1	-	-	41	0	0.00	42	11	20.75	5	0	0.00	1	2	66.67
FAM132B	0	genome.wustl.edu	37	2	239071412	239071412	+	Silent	SNP	C	C	T			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	2	239071412	239071412	C	T	SNP	FAM132B	ENST00000546354	human	ensembl	74_37	+1	putative	silent	c.357	p.P119	0.632	NULL	superfamily_Tumour_necrosis_fac-like_dom	-	no_errors	FAM132B	HGNC	ENSG00000178752	tier1	-	-	70	0	0.00	21	30	58.82	34	0	0.00	6	21	77.78
MYH8	0	genome.wustl.edu	37	17	10309387	10309387	+	Silent	SNP	C	C	T			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	17	10309387	10309387	C	T	SNP	MYH8	ENST00000403437	human	ensembl	74_37	-1	known	silent	c.2403	p.R801	0.998	superfamily_P-loop_NTPase,pfscan_IQ_motif_EF-hand-BS	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_t-SRE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH8	HGNC	ENSG00000133020	tier1	-	-	60	0	0.00	11	52	82.54	103	0	0.00	9	112	92.56
PAGE5	0	genome.wustl.edu	37	X	55248256	55248256	+	Silent	SNP	G	G	A			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	X	55248256	55248256	G	A	SNP	PAGE5	ENST00000289619	human	ensembl	74_37	+1	known	silent	c.198	p.Q66	0.001	pfam_GAGE	pfam_GAGE	-	no_errors	PAGE5	HGNC	ENSG00000158639	tier1	-	-	45	0	0.00	2	61	96.83	21	0	0.00	1	11	91.67
USP27X	0	genome.wustl.edu	37	X	49645301	49645301	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	X	49645301	49645301	C	T	SNP	USP27X	ENST00000508866	human	ensembl	74_37	+1	known	missense	c.391	p.R131W	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP27X	HGNC	ENSG00000242013	tier1	-	-	26	0	0.00	29	4	12.12	56	0	0.00	67	6	8.22
CLSTN2	0	genome.wustl.edu	37	3	140281713	140281713	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	3	140281713	140281713	G	A	SNP	CLSTN2	ENST00000458420	human	ensembl	74_37	+1	known	missense	c.2273	p.R758H	0.001	NULL	pfam_Cadherin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CLSTN2	HGNC	ENSG00000158258	tier1	-	-	48	0	0.00	45	11	19.64	55	0	0.00	80	5	5.88
SLIT2	0	genome.wustl.edu	37	4	20620477	20620477	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	4	20620477	20620477	C	G	SNP	SLIT2	ENST00000504154	human	ensembl	74_37	+1	known	missense	c.4435	p.R1479G	0.962	smart_Cys_knot_C,pfscan_Cys_knot_C	pfam_EG-like_dom,pfam_Laminin_G,pfam_Leu-rich_rpt,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl_sf,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT2	HGNC	ENSG00000145147	tier1	-	-	61	0	0.00	64	16	20.00	79	0	0.00	93	10	9.71
NR2C1	0	genome.wustl.edu	37	12	95422248	95422248	+	Silent	SNP	T	T	C			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	12	95422248	95422248	T	C	SNP	NR2C1	ENST00000333003	human	ensembl	74_37	-1	known	silent	c.1446	p.L482	0.890	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt	-	no_errors	NR2C1	HGNC	ENSG00000120798	tier1	-	-	81	0	0.00	82	18	18.00	81	0	0.00	77	7	8.33
TRIM6-TRIM34	0	genome.wustl.edu	37	11	5624955	5624955	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	11	5624955	5624955	A	T	SNP	TRIM6-TRIM34	ENST00000354852	human	ensembl	74_37	+1	known	missense	c.497	p.Q166L	0.468	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM6-TRIM34	HGNC	ENSG00000258588	tier1	-	-	51	0	0.00	80	8	9.09	99	0	0.00	100	6	5.61
DCDC1	0	genome.wustl.edu	37	11	31086639	31086639	+	Missense_Mutation	SNP	T	T	G			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	11	31086639	31086639	T	G	SNP	DCDC1	ENST00000597505	human	ensembl	74_37	-1	putative	missense	c.2360	p.Q787P	1.000	superfamily_Ricin_B_lectin,pfscan_Ricin_B_lectin	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Doublecortin_dom,pfscan_Doublecortin_dom,pfscan_Ricin_B_lectin	-	no_errors	DCDC1	HGNC	ENSG00000170959	tier1	-	-	51	0	0.00	53	5	8.62	89	0	0.00	77	8	9.41
AKAP9	0	genome.wustl.edu	37	7	91714967	91714986	+	Frame_Shift_Del	DEL	AATTACAAAGATGCAACTGC	AATTACAAAGATGCAACTGC	-			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	AATTACAAAGATGCAACTGC	AATTACAAAGATGCAACTGC	AATTACAAAGATGCAACTGC	-	AATTACAAAGATGCAACTGC	AATTACAAAGATGCAACTGC	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	7	91714967	91714986	AATTACAAAGATGCAACTGC	-	DEL	AKAP9	ENST00000359028	human	ensembl	74_37	+1	known	frame_shift_del	c.9003_9022	p.I3002fs	0.986:1.000:1.000:1.000:0.982:0.998:0.997:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.970:0.905:0.944:0.964:0.996	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB	-	no_errors	AKAP9	HGNC	ENSG00000127914	tier1			80	0	0.00	73	4	5.19	80	0	0.00	73	4	5.19
AKAP9	0	genome.wustl.edu	37	7	91714957	91714957	+	Frame_Shift_Del	DEL	T	T	-			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	7	91714957	91714957	T	-	DEL	AKAP9	ENST00000359028	human	ensembl	74_37	+1	known	frame_shift_del	c.8993	p.L2998fs	1.000	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB	-	no_errors	AKAP9	HGNC	ENSG00000127914	tier1			30	0	0.00	42	7	14.29	79	0	0.00	76	4	5.00
ZNF569	0	genome.wustl.edu	37	19	37905235	37905235	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	19	37905235	37905235	C	T	SNP	ZNF569	ENST00000316950	human	ensembl	74_37	-1	known	missense	c.325	p.E109K	0.048	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF569	HGNC	ENSG00000196437	tier1	-	-	34	0	0.00	52	7	11.86	132	2	1.49	254	14	5.20
CNTP4	0	genome.wustl.edu	37	16	76482698	76482698	+	Silent	SNP	C	C	A			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	16	76482698	76482698	C	A	SNP	CNTP4	ENST00000307431	human	ensembl	74_37	+1	known	silent	c.774	p.V258	0.939	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTP4	HGNC	ENSG00000152910	tier1	-	-	51	0	0.00	5	26	83.87	104	2	1.89	8	69	88.46
ANP32A	0	genome.wustl.edu	37	15	69072347	69072347	+	R	DEL	G	G	-			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	15	69072347	69072347	G	-	DEL	ANP32A	ENST00000267918	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ANP32A	HGNC	ENSG00000140350	tier1			45	0	0.00	47	8	14.55	5	0	0.00	0	0	0.00
GDF10	0	genome.wustl.edu	37	10	48438537	48438537	+	Silent	SNP	C	C	T			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	10	48438537	48438537	C	T	SNP	GDF10	ENST00000224605	human	ensembl	74_37	-1	known	silent	c.174	p.R58	0.030	pirsf_BMP3/GDF10	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,pirsf_BMP3/GDF10	-	no_errors	GDF10	HGNC	ENSG00000107623	tier1	rs45620039	-	41	0	0.00	44	4	8.33	6	0	0.00	9	0	0.00
CAC1A	0	genome.wustl.edu	37	19	13318673	13318678	+	In_Frame_Del	DEL	CTGCTG	CTGCTG	-			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	CTGCTG	CTGCTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	19	13318673	13318678	CTGCTG	-	DEL	CAC1A	ENST00000360228	human	ensembl	74_37	-1	known	in_frame_del	c.6975_6970	p.QQ2324in_frame_del	0.259:0.316:0.374:0.432:0.459:0.497	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_P/Q_a1su	-	no_errors	CAC1A	HGNC	ENSG00000141837	tier1			0	0	0.00	0	0	0.00	0	0	0.00	0	0	0.00
CCDC40	0	genome.wustl.edu	37	17	78039342	78039342	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	17	78039342	78039342	C	T	SNP	CCDC40	ENST00000397545	human	ensembl	74_37	+1	known	missense	c.1499	p.A500V	0.000	NULL	pfam_E3_ubiquit_lig_BRE1	-	no_errors	CCDC40	HGNC	ENSG00000141519	tier1	-	-	45	0	0.00	41	4	8.89	4	0	0.00	4	0	0.00
DNM1P47	0	genome.wustl.edu	37	15	102294368	102294368	+	R	SNP	A	A	T			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	15	102294368	102294368	A	T	SNP	DNM1P47	ENST00000561463	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DNM1P47	HGNC	ENSG00000259660	tier1	rs144412148	-	13	0	0.00	8	7	46.67	0	0	0.00	0	0	0.00
ENSG00000221395	0	genome.wustl.edu	37	16	82875745	82875750	+	R	DEL	ACATAT	ACATAT	-			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	ACATAT	ACATAT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	16	82875745	82875750	ACATAT	-	DEL	ENSG00000221395	ENST00000408468	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.003:0.002:0.004:0.004:0.003:0.003	-	-	-	no_errors	AC099506.1	Clone_based_ensembl_gene	ENSG00000221395	tier1			0	0	0.00	0	0	0.00	0	0	0.00	0	0	0.00
ENSG00000266885	0	genome.wustl.edu	37	17	21934924	21934924	+	R	SNP	C	C	T			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	17	21934924	21934924	C	T	SNP	ENSG00000266885	ENST00000582527	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	RP11-744K17.2	Clone_based_vega_gene	ENSG00000266885	tier1	-	-	17	0	0.00	3	9	75.00	0	0	0.00	0	0	0.00
HRCT1	0	genome.wustl.edu	37	9	35906595	35906596	+	In_Frame_Ins	INS	-	-	CCACCC			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	9	35906595	35906596	-	CCACCC	INS	HRCT1	ENST00000354323	human	ensembl	74_37	+1	known	in_frame_ins	c.311_312	p.108in_frame_insPH	0.012:0.005	NULL	NULL	-	no_errors	HRCT1	HGNC	ENSG00000196196	tier1			0	0	0.00	2	0	0.00	0	0	0.00	2	0	0.00
LHCGR	0	genome.wustl.edu	37	2	48982775	48982777	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	2	48982775	48982777	CTT	-	DEL	LHCGR	ENST00000294954	human	ensembl	74_37	-1	known	in_frame_del	c.36_34	p.K12in_frame_del	0.000:0.000:0.000	prints_TSH_rcpt	pfam_GPCR_Rhodpsn,prints_LSH_rcpt,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn,prints_TSH_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	LHCGR	HGNC	ENSG00000138039	tier1			25	0	0.00	27	5	15.62	1	0	0.00	0	0	0.00
PTPN5	0	genome.wustl.edu	37	11	18751262	18751262	+	Missense_Mutation	SNP	A	A	C			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	11	18751262	18751262	A	C	SNP	PTPN5	ENST00000358540	human	ensembl	74_37	-1	known	missense	c.1433	p.V478G	1.000	pirsf_Tyr_Pase_rcpt_R/non-rcpt_5,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_KIM-con,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	pirsf_Tyr_Pase_rcpt_R/non-rcpt_5,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_KIM-con,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN5	HGNC	ENSG00000110786	tier1	-	-	68	0	0.00	61	10	14.08	3	0	0.00	1	0	0.00
TUBBP5	0	genome.wustl.edu	37	9	141071190	141071190	+	R	SNP	T	T	C			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	9	141071190	141071190	T	C	SNP	TUBBP5	ENST00000290377	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TUBBP5	HGNC	ENSG00000159247	tier1	-	-	75	0	0.00	41	8	16.33	4	0	0.00	0	0	0.00
TMEM191C	0	genome.wustl.edu	37	22	21822373	21822385	+	R	DEL	AGGATCCGGGGGT	AGGATCCGGGGGT	-			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	AGGATCCGGGGGT	AGGATCCGGGGGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	22	21822373	21822385	AGGATCCGGGGGT	-	DEL	TMEM191C	ENST00000449424	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003:0.005:0.001:0.001:0.002:0.003:0.000:0.000:0.000:0.057:0.077:0.000:0.000	-	-	-	no_errors	TMEM191C	HGNC	ENSG00000206140	tier1			0	0	0.00	0	19	100.00	0	0	0.00	0	19	100.00
UBR4	0	genome.wustl.edu	37	1	19511667	19511667	+	Silent	SNP	G	G	T			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	1	19511667	19511667	G	T	SNP	UBR4	ENST00000375267	human	ensembl	74_37	-1	known	silent	c.1864	p.R622	0.990	NULL	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481	tier1	-	-	53	0	0.00	78	9	10.34	110	0	0.00	112	2	1.75
MYCBP2	0	genome.wustl.edu	37	13	77629706	77629730	+	Frame_Shift_Del	DEL	TAGCACACATAATATGCATATCTAT	TAGCACACATAATATGCATATCTAT	-			TCGA-DX-A8BU-01A-11D-A37C-09	TCGA-DX-A8BU-10A-01D-A37F-09	TAGCACACATAATATGCATATCTAT	TAGCACACATAATATGCATATCTAT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	330b9068-ca47-4592-88e4-6c469c5cd907	6251e219-3da3-43e1-aba3-1ab654ae4151	13	77629706	77629730	TAGCACACATAATATGCATATCTAT	-	DEL	MYCBP2	ENST00000407578	human	ensembl	74_37	-1	known	frame_shift_del	c.13634_13610	p.N4537fs	1.000:1.000:1.000:1.000:1.000:0.972:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.997:1.000:1.000:1.000:1.000:0.998:0.947:1.000	NULL	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_RCC1/BLIP-II,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810	tier1			62	0	0.00	79	3	3.66	62	0	0.00	79	3	3.66
