Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
APLP2	0	genome.wustl.edu	37	11	130003584	130003584	+	Missense_Mutation	SNP	A	A	C			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	11	130003584	130003584	A	C	SNP	APLP2	ENST00000263574	human	ensembl	74_37	+1	known	missense	c.1645	p.K549Q	1.000	superfamily_Amyloid_glyco_E2_domain	pfam_Amyloid_glyco_heparin-bd,pfam_APP_amyloid_C,pfam_Prot_inh_Kunz-m,superfamily_Amyloid_glyco_E2_domain,superfamily_Amyloid_glyco_heparin-bd,superfamily_Amyloid_glyco_Cu-bd,superfamily_Prot_inh_Kunz-m,smart_Amyloid_glyco_extra,smart_Prot_inh_Kunz-m,prints_Amyloid_glyco,prints_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	-	no_errors	APLP2	HGNC	ENSG00000084234	tier1	-	-	43	0	0.00	16	8	33.33	106	0	0.00	66	25	27.47
ZNF175	0	genome.wustl.edu	37	19	52090690	52090690	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	19	52090690	52090690	G	T	SNP	ZNF175	ENST00000262259	human	ensembl	74_37	+1	known	missense	c.1106	p.G369V	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF175	HGNC	ENSG00000105497	tier1	-	-	37	0	0.00	23	5	17.86	101	0	0.00	119	24	16.78
SIRPB2	0	genome.wustl.edu	37	20	1456846	1456846	+	Missense_Mutation	SNP	A	A	C			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	20	1456846	1456846	A	C	SNP	SIRPB2	ENST00000359801	human	ensembl	74_37	-1	known	missense	c.995	p.M332R	0.000	NULL	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	SIRPB2	HGNC	ENSG00000196209	tier1	-	-	52	0	0.00	30	8	21.05	36	0	0.00	32	12	27.27
P2RX7	0	genome.wustl.edu	37	12	121605337	121605337	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	12	121605337	121605337	G	A	SNP	P2RX7	ENST00000546057	human	ensembl	74_37	+1	known	missense	c.791	p.R264H	0.000	pfam_P2X_purnocptor,tigrfam_P2X_purnocptor	pfam_P2X_purnocptor,prints_P2X7_purnocptor,prints_P2X_purnocptor,tigrfam_P2X_purnocptor	-	no_errors	P2RX7	HGNC	ENSG00000089041	tier1	rs149639375	-	62	0	0.00	38	8	17.39	120	0	0.00	121	21	14.79
MARCH1	0	genome.wustl.edu	37	4	164533818	164533818	+	Silent	SNP	G	G	A			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	4	164533818	164533818	G	A	SNP	MARCH1	ENST00000514618	human	ensembl	74_37	-1	novel	silent	c.615	p.N205	0.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH,pfscan_Znf_RING	-	no_errors	MARCH1	HGNC	ENSG00000145416	tier1	-	-	55	0	0.00	47	11	18.64	72	0	0.00	88	17	16.04
CRYBA4	0	genome.wustl.edu	37	22	27026429	27026429	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	22	27026429	27026429	G	T	SNP	CRYBA4	ENST00000354760	human	ensembl	74_37	+1	known	missense	c.569	p.S190I	0.995	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYBA4	HGNC	ENSG00000196431	tier1	-	-	65	0	0.00	42	9	17.65	33	0	0.00	68	10	12.82
LAMC2	0	genome.wustl.edu	37	1	183212350	183212350	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	1	183212350	183212350	C	T	SNP	LAMC2	ENST00000264144	human	ensembl	74_37	+1	known	nonsense	c.3397	p.Q1133*	0.346	NULL	pfam_EGF_laminin,pfam_Laminin_B_type_IV,superfamily_Growth_fac_rcpt_N_dom,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin	-	no_errors	LAMC2	HGNC	ENSG00000058085	tier1	-	-	37	0	0.00	40	17	29.82	37	0	0.00	69	19	21.59
ARAP1	0	genome.wustl.edu	37	11	72404505	72404505	+	Silent	SNP	G	G	A			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	11	72404505	72404505	G	A	SNP	ARAP1	ENST00000393609	human	ensembl	74_37	-1	known	silent	c.3819	p.V1273	0.993	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_ArfGAP,pfam_SAM_type1,pfam_Ras-assoc,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP1	HGNC	ENSG00000186635	tier1	-	-	72	0	0.00	40	11	21.57	29	0	0.00	42	8	16.00
RARB	0	genome.wustl.edu	37	3	25636129	25636129	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	3	25636129	25636129	C	G	SNP	RARB	ENST00000404969	human	ensembl	74_37	+1	known	missense	c.1131	p.I377M	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt,prints_Nuc_orph_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Nuc_orph_rcpt,prints_Retinoid-X_rcpt/HNF4	-	no_errors	RARB	HGNC	ENSG00000077092	tier1	-	-	43	0	0.00	29	19	38.78	78	0	0.00	75	31	29.25
SLC10A7	0	genome.wustl.edu	37	4	147227160	147227160	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	4	147227160	147227160	A	G	SNP	SLC10A7	ENST00000394062	human	ensembl	74_37	-1	known	missense	c.473	p.L158P	1.000	pfam_BilAc/Na_symport,pirsf_Put_Na-Bile_cotransptr	pfam_BilAc/Na_symport,pirsf_Put_Na-Bile_cotransptr	-	no_errors	SLC10A7	HGNC	ENSG00000120519	tier1	-	-	42	0	0.00	30	4	11.76	90	0	0.00	41	12	22.64
KIF3B	0	genome.wustl.edu	37	20	30917948	30917948	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	20	30917948	30917948	A	G	SNP	KIF3B	ENST00000375712	human	ensembl	74_37	+1	known	missense	c.1973	p.E658G	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF3B	HGNC	ENSG00000101350	tier1	-	-	55	0	0.00	56	6	9.68	50	0	0.00	62	7	10.14
ACSL6	0	genome.wustl.edu	37	5	131298244	131298244	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	5	131298244	131298244	T	C	SNP	ACSL6	ENST00000296869	human	ensembl	74_37	-1	known	missense	c.1841	p.H614R	1.000	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSL6	HGNC	ENSG00000164398	tier1	-	-	27	0	0.00	38	5	11.63	84	0	0.00	94	22	18.97
ZFR	0	genome.wustl.edu	37	5	32379260	32379260	+	Silent	SNP	G	G	A			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	5	32379260	32379260	G	A	SNP	ZFR	ENST00000265069	human	ensembl	74_37	-1	known	silent	c.2796	p.L932	0.993	pfam_DZF,smart_DZF	pfam_DZF,pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like,smart_DZF	-	no_errors	ZFR	HGNC	ENSG00000056097	tier1	-	-	21	0	0.00	24	7	22.58	99	0	0.00	216	58	21.17
SRCIN1	0	genome.wustl.edu	37	17	36700164	36700164	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	17	36700164	36700164	G	A	SNP	SRCIN1	ENST00000264659	human	ensembl	74_37	-1	known	missense	c.3311	p.P1104L	0.995	NULL	pfam_AIP3_C	-	no_errors	SRCIN1	HGNC	ENSG00000017373	tier1	-	-	137	0	0.00	101	43	29.86	15	0	0.00	17	14	45.16
CEACAM5	0	genome.wustl.edu	37	19	42224881	42224881	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	19	42224881	42224881	C	G	SNP	CEACAM5	ENST00000221992	human	ensembl	74_37	+1	known	missense	c.1811	p.S604C	0.002	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	CEACAM5	HGNC	ENSG00000105388	tier1	-	-	79	0	0.00	54	7	11.48	87	0	0.00	123	21	14.48
IDH1	0	genome.wustl.edu	37	2	209110099	209110099	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	2	209110099	209110099	G	C	SNP	IDH1	ENST00000345146	human	ensembl	74_37	-1	known	missense	c.464	p.T155S	1.000	pfam_IsoPropMal-DH-like_dom,pirsf_Isocitrate_DH_DP,tigrfam_Isocitrate_DH_DP	pfam_IsoPropMal-DH-like_dom,pirsf_Isocitrate_DH_DP,tigrfam_Isocitrate_DH_DP	-	no_errors	IDH1	HGNC	ENSG00000138413	tier1	-	-	56	0	0.00	27	24	47.06	135	0	0.00	84	57	40.43
OR56A3	0	genome.wustl.edu	37	11	5969152	5969152	+	Silent	SNP	C	C	T			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	11	5969152	5969152	C	T	SNP	OR56A3	ENST00000329564	human	ensembl	74_37	+1	known	silent	c.576	p.S192	0.998	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR56A3	HGNC	ENSG00000184478	tier1	-	-	53	0	0.00	17	8	32.00	73	0	0.00	70	25	26.32
CNTP5	0	genome.wustl.edu	37	2	125547486	125547486	+	Silent	SNP	G	G	A			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	2	125547486	125547486	G	A	SNP	CNTP5	ENST00000431078	human	ensembl	74_37	+1	known	silent	c.2757	p.T919	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTP5	HGNC	ENSG00000155052	tier1	-	-	45	0	0.00	26	6	18.75	83	0	0.00	56	40	41.67
PCDHGA4	0	genome.wustl.edu	37	5	140736262	140736262	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	5	140736262	140736262	G	A	SNP	PCDHGA4	ENST00000571252	human	ensembl	74_37	+1	known	missense	c.1495	p.A499T	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA4	HGNC	ENSG00000262576	tier1	-	-	39	0	0.00	19	15	44.12	75	0	0.00	89	38	29.92
KRT12	0	genome.wustl.edu	37	17	39023145	39023145	+	Silent	SNP	C	C	T			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	17	39023145	39023145	C	T	SNP	KRT12	ENST00000251643	human	ensembl	74_37	-1	known	silent	c.294	p.G98	0.002	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT12	HGNC	ENSG00000187242	tier1	-	-	75	0	0.00	35	21	36.84	63	0	0.00	64	34	34.69
PCDHGA1	0	genome.wustl.edu	37	5	140710512	140710512	+	Silent	SNP	G	G	A			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	5	140710512	140710512	G	A	SNP	PCDHGA1	ENST00000517417	human	ensembl	74_37	+1	known	silent	c.261	p.A87	0.004	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA1	HGNC	ENSG00000204956	tier1	-	-	28	0	0.00	28	5	15.15	47	0	0.00	53	20	27.40
ENSG00000255641	0	genome.wustl.edu	37	12	10588425	10588425	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	12	10588425	10588425	C	T	SNP	ENSG00000255641	ENST00000539033	human	ensembl	74_37	-1	known	missense	c.161	p.G54E	0.001	NULL	pfam_C-type_lectin,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	NKG2-E	Uniprot_gn	ENSG00000255641	tier1	-	-	109	0	0.00	60	13	17.81	59	0	0.00	27	6	18.18
BNIP2	0	genome.wustl.edu	37	15	59955820	59955820	+	R	SNP	T	T	C			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	15	59955820	59955820	T	C	SNP	BNIP2	ENST00000478981	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.931	-	-	-	no_errors	BNIP2	HGNC	ENSG00000140299	tier1	-	-	56	0	0.00	22	23	51.11	105	0	0.00	14	12	46.15
TM7SF2	0	genome.wustl.edu	37	11	64880999	64880999	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	11	64880999	64880999	T	A	SNP	TM7SF2	ENST00000279263	human	ensembl	74_37	+1	known	missense	c.536	p.L179H	1.000	pfam_Ergosterol_biosynth_ERG4_ERG24	pfam_Ergosterol_biosynth_ERG4_ERG24,pfam_DUF1295	-	no_errors	TM7SF2	HGNC	ENSG00000149809	tier1	-	-	59	0	0.00	67	6	8.22	81	0	0.00	124	18	12.68
NRIP1	0	genome.wustl.edu	37	21	16338470	16338470	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	21	16338470	16338470	C	T	SNP	NRIP1	ENST00000318948	human	ensembl	74_37	-1	known	missense	c.2044	p.E682K	0.997	NULL	NULL	-	no_errors	NRIP1	HGNC	ENSG00000180530	tier1	-	-	46	0	0.00	38	17	30.91	79	0	0.00	79	35	30.70
IGF2BP3	0	genome.wustl.edu	37	7	23509681	23509681	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	7	23509681	23509681	C	A	SNP	IGF2BP3	ENST00000258729	human	ensembl	74_37	-1	known	missense	c.49	p.D17Y	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_KH_dom_type_1,pfam_RRM_dom,smart_RRM_dom,smart_KH_dom,pfscan_KH_dom_type_1,pfscan_RRM_dom	-	no_errors	IGF2BP3	HGNC	ENSG00000136231	tier1	-	-	91	0	0.00	45	6	11.76	59	0	0.00	46	9	16.07
NRIP1	0	genome.wustl.edu	37	21	16337345	16337345	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	21	16337345	16337345	C	G	SNP	NRIP1	ENST00000318948	human	ensembl	74_37	-1	known	missense	c.3169	p.D1057H	1.000	NULL	NULL	-	no_errors	NRIP1	HGNC	ENSG00000180530	tier1	-	-	77	0	0.00	77	24	23.76	86	0	0.00	114	38	25.00
SARDH	0	genome.wustl.edu	37	9	136573521	136573521	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	9	136573521	136573521	G	C	SNP	SARDH	ENST00000371872	human	ensembl	74_37	-1	known	missense	c.1358	p.P453R	0.040	NULL	pfam_FAD-dep_OxRdtase,pfam_GCV_T_N,pfam_GCV_T_C	-	no_errors	SARDH	HGNC	ENSG00000123453	tier1	-	-	73	0	0.00	64	15	18.99	41	0	0.00	53	10	15.87
ZNF718	0	genome.wustl.edu	37	4	155020	155020	+	R	SNP	T	T	C			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	4	155020	155020	T	C	SNP	ZNF718	ENST00000400172	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ZNF718	HGNC	ENSG00000250312	tier1	-	-	39	0	0.00	11	3	21.43	76	0	0.00	77	17	18.09
C1orf173	0	genome.wustl.edu	37	1	75038857	75038857	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	1	75038857	75038857	T	A	SNP	C1orf173	ENST00000326665	human	ensembl	74_37	-1	known	missense	c.2537	p.E846V	0.966	NULL	NULL	-	no_errors	C1orf173	HGNC	ENSG00000178965	tier1	-	-	61	0	0.00	31	5	13.89	42	0	0.00	38	7	15.56
PLCXD3	0	genome.wustl.edu	37	5	41313778	41313778	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	5	41313778	41313778	A	T	SNP	PLCXD3	ENST00000328457	human	ensembl	74_37	-1	known	missense	c.907	p.F303I	1.000	superfamily_PLC-like_Pdiesterase_TIM-brl	pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_PInositol-sp_X_dom	-	no_errors	PLCXD3	HGNC	ENSG00000182836	tier1	-	-	34	0	0.00	33	12	26.67	69	0	0.00	127	26	16.99
HSF2BP	0	genome.wustl.edu	37	21	44949728	44949728	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	21	44949728	44949728	C	T	SNP	HSF2BP	ENST00000291560	human	ensembl	74_37	-1	known	missense	c.911	p.R304H	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HSF2BP	HGNC	ENSG00000160207	tier1	rs145814386	-	84	0	0.00	73	16	17.98	53	0	0.00	77	18	18.95
ENSG00000244151	0	genome.wustl.edu	37	7	150772280	150772280	+	R	SNP	G	G	C			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	7	150772280	150772280	G	C	SNP	ENSG00000244151	ENST00000485974	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.056	-	-	-	no_errors	RP11-148K1.12	Clone_based_vega_gene	ENSG00000244151	tier1	-	-	50	0	0.00	21	11	34.38	46	0	0.00	34	23	40.35
ANKRD36BP1	0	genome.wustl.edu	37	1	168216218	168216218	+	R	SNP	A	A	G			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	1	168216218	168216218	A	G	SNP	ANKRD36BP1	ENST00000358576	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.294	-	-	-	no_errors	ANKRD36BP1	HGNC	ENSG00000214262	tier1	-	-	86	0	0.00	132	13	8.97	67	0	0.00	79	17	17.53
TP53	0	genome.wustl.edu	37	17	7578212	7578212	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	17	7578212	7578212	G	A	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	nonsense	c.637	p.R213*	0.893	pfam_p53_D-bd,superfamily_p53-like_TF_D-bd,prints_p53_tumour_suppressor	pfam_p53_D-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_D-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	-	-	85	0	0.00	21	48	69.57	101	0	0.00	56	100	63.69
SPATA31E1	0	genome.wustl.edu	37	9	90500141	90500141	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	9	90500141	90500141	C	A	SNP	SPATA31E1	ENST00000325643	human	ensembl	74_37	+1	known	missense	c.739	p.Q247K	0.001	NULL	NULL	-	no_errors	SPATA31E1	HGNC	ENSG00000177992	tier1	-	-	49	0	0.00	41	7	14.58	72	0	0.00	78	24	23.53
PABPC4L	0	genome.wustl.edu	37	4	135121102	135121102	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	4	135121102	135121102	C	A	SNP	PABPC4L	ENST00000529122	human	ensembl	74_37	-1	known	missense	c.1247	p.G416V	1.000	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom,tigrfam_PABP_1234	pfam_RRM_dom,smart_RRM_dom,smart_RRM_dom_euk,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC4L	HGNC	ENSG00000254535	tier1	-	-	36	0	0.00	12	8	40.00	87	0	0.00	60	25	29.41
LRP5	0	genome.wustl.edu	37	11	68115452	68115452	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	11	68115452	68115452	G	T	SNP	LRP5	ENST00000294304	human	ensembl	74_37	+1	known	missense	c.229	p.V77L	0.989	pirsf_Low_density_Lipo_rcpt-rel_p5/6,smart_LDLR_classB_rpt	pirsf_Low_density_Lipo_rcpt-rel_p5/6,pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDLR_classB_rpt,smart_EG-like_dom,smart_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP5	HGNC	ENSG00000162337	tier1	-	-	56	0	0.00	38	9	19.15	62	0	0.00	79	13	14.13
C9	0	genome.wustl.edu	37	5	39342252	39342252	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	5	39342252	39342252	C	G	SNP	C9	ENST00000263408	human	ensembl	74_37	-1	known	missense	c.124	p.D42H	1.000	superfamily_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_MACPF,pfam_LDrepeatLR_classA_rpt,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,prints_MAC_perforin,pfscan_LDrepeatLR_classA_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	C9	HGNC	ENSG00000113600	tier1	-	-	58	0	0.00	93	10	9.71	52	0	0.00	158	21	11.73
TMEM199	0	genome.wustl.edu	37	17	26685947	26685947	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	17	26685947	26685947	C	G	SNP	TMEM199	ENST00000509083	human	ensembl	74_37	+1	known	missense	c.220	p.L74V	0.018	NULL	pfam_ATPase_Vma12	-	no_errors	TMEM199	HGNC	ENSG00000244045	tier1	-	-	55	0	0.00	32	10	23.81	109	0	0.00	122	25	17.01
ANKUB1	0	genome.wustl.edu	37	3	149485707	149485707	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	3	149485707	149485707	C	T	SNP	ANKUB1	ENST00000446160	human	ensembl	74_37	-1	known	missense	c.742	p.A248T	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ubiquitin_supergroup	-	no_errors	ANKUB1	HGNC	ENSG00000206199	tier1	-	-	45	0	0.00	33	4	10.81	33	0	0.00	50	13	20.63
SULT1E1	0	genome.wustl.edu	37	4	70715166	70715166	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	4	70715166	70715166	A	T	SNP	SULT1E1	ENST00000226444	human	ensembl	74_37	-1	known	missense	c.485	p.M162K	1.000	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	SULT1E1	HGNC	ENSG00000109193	tier1	-	-	96	0	0.00	82	18	18.00	85	0	0.00	56	13	18.84
C1orf21	0	genome.wustl.edu	37	1	184588751	184588751	+	R	SNP	A	A	G			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	1	184588751	184588751	A	G	SNP	C1orf21	ENST00000367514	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	C1orf21	HGNC	ENSG00000116667	tier1	-	-	54	0	0.00	34	23	39.66	170	0	0.00	125	91	42.13
HMCN1	0	genome.wustl.edu	37	1	186089277	186089277	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	1	186089277	186089277	G	A	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	missense	c.12229	p.V4077I	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341	tier1	-	-	71	0	0.00	48	30	38.46	102	0	0.00	98	55	35.95
RIN2	0	genome.wustl.edu	37	20	19970901	19970901	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	20	19970901	19970901	A	G	SNP	RIN2	ENST00000255006	human	ensembl	74_37	+1	known	missense	c.2161	p.M721V	1.000	pfam_VPS9,smart_VPS9_subgr,pfscan_VPS9	pfam_VPS9,pfam_Ras-assoc,smart_VPS9_subgr,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SH2,pfscan_VPS9	-	no_errors	RIN2	HGNC	ENSG00000132669	tier1	-	-	40	0	0.00	16	4	20.00	53	0	0.00	40	12	23.08
SCN2A	0	genome.wustl.edu	37	2	166223861	166223861	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	2	166223861	166223861	C	A	SNP	SCN2A	ENST00000283256	human	ensembl	74_37	+1	known	missense	c.3655	p.L1219M	1.000	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531	tier1	-	-	61	0	0.00	42	5	10.64	62	0	0.00	100	16	13.79
FAM86JP	0	genome.wustl.edu	37	3	125648532	125648532	+	R	SNP	C	C	T			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	3	125648532	125648532	C	T	SNP	FAM86JP	ENST00000467239	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	FAM86JP	HGNC	ENSG00000171084	tier1	-	-	43	0	0.00	36	16	30.77	60	0	0.00	40	21	34.43
ENSG00000229047	0	genome.wustl.edu	37	21	16333666	16333666	+	R	SNP	C	C	T			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	21	16333666	16333666	C	T	SNP	ENSG00000229047	ENST00000446301	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	AF127577.10	Clone_based_vega_gene	ENSG00000229047	tier1	-	-	41	0	0.00	38	6	13.64	64	0	0.00	26	9	25.71
ATRX	0	genome.wustl.edu	37	X	76937766	76937769	+	Frame_Shift_Del	DEL	TTTC	TTTC	-			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	TTTC	TTTC	TTTC	-	TTTC	TTTC	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	X	76937766	76937769	TTTC	-	DEL	ATRX	ENST00000373344	human	ensembl	74_37	-1	known	frame_shift_del	c.2982_2979	p.K993fs	0.936:0.944:0.949:0.993	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224	tier1			41	0	0.00	13	13	50.00	51	0	0.00	16	18	52.94
HNRNPA0	0	genome.wustl.edu	37	5	137089075	137089076	+	In_Frame_Ins	INS	-	-	CCG			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	-	-	-	CCG	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	5	137089075	137089076	-	CCG	INS	HNRNPA0	ENST00000314940	human	ensembl	74_37	-1	known	in_frame_ins	c.681_680	p.231in_frame_insG	0.019:0.578	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPA0	HGNC	ENSG00000177733	tier1			12	0	0.00	9	4	30.77	12	0	0.00	13	2	13.33
DHX37	0	genome.wustl.edu	37	12	125436983	125436983	+	Silent	SNP	G	G	A			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	12	125436983	125436983	G	A	SNP	DHX37	ENST00000308736	human	ensembl	74_37	-1	known	silent	c.2829	p.S943	0.290	pfam_DUF1605,superfamily_P-loop_NTPase	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_D/R_helicase_DEAD/DEAH_N,pfam_T2SS_protein-E,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX37	HGNC	ENSG00000150990	tier1	-	-	35	0	0.00	19	10	34.48	10	0	0.00	8	4	33.33
CCL15	0	genome.wustl.edu	37	17	34324877	34324877	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	17	34324877	34324877	G	A	SNP	CCL15	ENST00000354059	human	ensembl	74_37	-1	known	missense	c.268	p.R90W	0.000	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	-	no_errors	CCL15	HGNC	ENSG00000267596	tier1	rs138739843	-	60	0	0.00	54	9	14.06	98	1	1.01	109	12	9.92
OR10C1	0	genome.wustl.edu	37	6	29407999	29407999	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	6	29407999	29407999	G	C	SNP	OR10C1	ENST00000444197	human	ensembl	74_37	+1	known	missense	c.207	p.E69D	0.558	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR10C1	HGNC	ENSG00000206474	tier1	-	-	56	0	0.00	42	6	12.50	47	0	0.00	60	4	6.25
OR14K1	0	genome.wustl.edu	37	1	247902370	247902370	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	1	247902370	247902370	G	C	SNP	OR14K1	ENST00000283225	human	ensembl	74_37	+1	known	missense	c.454	p.A152P	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR14K1	HGNC	ENSG00000153230	tier1	-	-	50	0	0.00	38	13	25.49	57	0	0.00	63	5	7.35
LILRB5	0	genome.wustl.edu	37	19	54758267	54758267	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	19	54758267	54758267	C	A	SNP	LILRB5	ENST00000450632	human	ensembl	74_37	-1	known	missense	c.1240	p.D414Y	0.000	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LILRB5	HGNC	ENSG00000105609	tier1	-	-	61	0	0.00	40	8	16.67	93	0	0.00	106	6	5.36
MAPKBP1	0	genome.wustl.edu	37	15	42106769	42106769	+	Silent	SNP	G	G	A			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	15	42106769	42106769	G	A	SNP	MAPKBP1	ENST00000456763	human	ensembl	74_37	+1	known	silent	c.1020	p.A340	0.547	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	MAPKBP1	HGNC	ENSG00000137802	tier1	-	-	71	0	0.00	39	10	20.41	53	1	1.85	97	10	9.35
PKMYT1	0	genome.wustl.edu	37	16	3022637	3022637	+	Frame_Shift_Del	DEL	G	G	-			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	16	3022637	3022637	G	-	DEL	PKMYT1	ENST00000431515	human	ensembl	74_37	-1	putative	frame_shift_del	c.1507	p.R503fs	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	PKMYT1	HGNC	ENSG00000127564	tier1			44	0	0.00	31	6	16.22	100	0	0.00	91	6	6.19
ENSG00000238009	0	genome.wustl.edu	37	1	133414	133414	+	R	SNP	T	T	G			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	1	133414	133414	T	G	SNP	ENSG00000238009	ENST00000453576	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.955	-	-	-	no_errors	RP11-34P13.7	Clone_based_vega_gene	ENSG00000238009	tier1	-	-	73	0	0.00	80	17	17.53	0	0	0.00	0	0	0.00
KC5	0	genome.wustl.edu	37	12	5153524	5153524	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	12	5153524	5153524	C	A	SNP	KC5	ENST00000252321	human	ensembl	74_37	+1	known	missense	c.211	p.P71T	0.043	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,pfam_PKD1_2_channel,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.5,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KC5	HGNC	ENSG00000130037	tier1	-	-	29	0	0.00	15	5	25.00	2	0	0.00	2	0	0.00
MAGEL2	0	genome.wustl.edu	37	15	23890932	23890932	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	15	23890932	23890932	G	C	SNP	MAGEL2	ENST00000532292	human	ensembl	74_37	-1	known	missense	c.149	p.P50R	0.068	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEL2	HGNC	ENSG00000254585	tier1	-	-	46	0	0.00	24	8	25.00	0	0	0.00	1	0	0.00
MUC4	0	genome.wustl.edu	37	3	195508545	195508546	+	Frame_Shift_Ins	INS	-	-	G			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	3	195508545	195508546	-	G	INS	MUC4	ENST00000463781	human	ensembl	74_37	-1	known	frame_shift_ins	c.9906_9905	p.S3303fs	0.002:0.002	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EG-like_dom,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	tier1			44	0	0.00	22	3	12.00	1	0	0.00	0	0	0.00
WASH3P	0	genome.wustl.edu	37	15	102513202	102513202	+	R	DEL	C	C	-			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	15	102513202	102513202	C	-	DEL	WASH3P	ENST00000354296	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.994	-	-	-	no_errors	WASH3P	HGNC	ENSG00000185596	tier1			19	0	0.00	13	5	27.78	0	0	0.00	0	0	0.00
TRIM46	0	genome.wustl.edu	37	1	155147426	155147426	+	R	SNP	G	G	T			TCGA-DX-A8BV-01A-11D-A37C-09	TCGA-DX-A8BV-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0853cc02-3315-40eb-8997-db4b02d27661	8533ae18-96d9-4fd5-b003-3dd8024121d2	1	155147426	155147426	G	T	SNP	TRIM46	ENST00000468878	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TRIM46	HGNC	ENSG00000163462	tier1	-	-	37	0	0.00	36	10	21.74	17	0	0.00	23	2	8.00
