Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
TMTC3	0	genome.wustl.edu	37	12	88547274	88547274	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	12	88547274	88547274	A	G	SNP	TMTC3	ENST00000266712	human	ensembl	74_37	+1	known	missense	c.396	p.I132M	1.000	NULL	pfam_TPR_2,pfam_TPR_1,pfam_DUF1736,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC3	HGNC	ENSG00000139324	tier1	-	-	44	0	0.00	25	18	41.86	66	0	0.00	29	23	44.23
MUC16	0	genome.wustl.edu	37	19	9015716	9015716	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	19	9015716	9015716	G	C	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.38107	p.L12703V	1.000	pfam_SEA_dom	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143	tier1	-	-	90	0	0.00	26	14	35.00	21	0	0.00	15	10	40.00
RYR2	0	genome.wustl.edu	37	1	237843759	237843759	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	1	237843759	237843759	G	A	SNP	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	missense	c.8893	p.V2965I	0.984	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	tier1	-	-	34	0	0.00	17	7	29.17	85	0	0.00	51	19	26.76
ENSG00000216089	0	genome.wustl.edu	37	4	160216908	160216908	+	R	SNP	C	C	T			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	4	160216908	160216908	C	T	SNP	ENSG00000216089	ENST00000401270	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors	AC105316.1	Clone_based_ensembl_gene	ENSG00000216089	tier1	rs4690935	-	33	0	0.00	29	5	14.71	9	0	0.00	19	4	17.39
OR4C46	0	genome.wustl.edu	37	11	51516009	51516009	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	11	51516009	51516009	C	T	SNP	OR4C46	ENST00000328188	human	ensembl	74_37	+1	known	missense	c.728	p.T243M	0.103	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4C46	HGNC	ENSG00000185926	tier1	rs137991158	-	93	0	0.00	24	12	33.33	25	0	0.00	13	13	50.00
FAM83G	0	genome.wustl.edu	37	17	18891589	18891589	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	17	18891589	18891589	G	A	SNP	FAM83G	ENST00000345041	human	ensembl	74_37	-1	known	missense	c.661	p.R221W	1.000	pfam_DUF1669	pfam_DUF1669	-	no_errors	FAM83G	HGNC	ENSG00000188522	tier1	-	-	44	0	0.00	9	7	43.75	70	0	0.00	39	32	45.07
ALKBH4	0	genome.wustl.edu	37	7	102097908	102097908	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	7	102097908	102097908	C	T	SNP	ALKBH4	ENST00000292566	human	ensembl	74_37	-1	known	missense	c.842	p.G281E	0.990	NULL	pfam_Oxoglu/Fe-dep_dioxygenase	-	no_errors	ALKBH4	HGNC	ENSG00000160993	tier1	-	-	78	0	0.00	32	30	48.39	26	0	0.00	12	9	42.86
CHPF2	0	genome.wustl.edu	37	7	150935155	150935155	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	7	150935155	150935155	G	T	SNP	CHPF2	ENST00000035307	human	ensembl	74_37	+1	known	missense	c.1707	p.E569D	1.000	pfam_Chond_Galc	pfam_Chond_Galc,pfam_Fringe-like	-	no_errors	CHPF2	HGNC	ENSG00000033100	tier1	-	-	42	0	0.00	13	8	38.10	86	0	0.00	54	30	35.71
TBC1D15	0	genome.wustl.edu	37	12	72291723	72291723	+	Splice_Site	SNP	T	T	A			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	12	72291723	72291723	T	A	SNP	TBC1D15	ENST00000550746	human	ensembl	74_37	+1	known	splice_site	c.1234+2	e11+2	1.000	-	-	-	no_errors	TBC1D15	HGNC	ENSG00000121749	tier1	-	-	66	0	0.00	31	56	64.37	83	0	0.00	44	27	37.50
IKBKAP	0	genome.wustl.edu	37	9	111685148	111685148	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	9	111685148	111685148	T	C	SNP	IKBKAP	ENST00000374647	human	ensembl	74_37	-1	known	missense	c.526	p.R176G	1.000	pfam_IKI3,pirsf_IKI3	pfam_IKI3,superfamily_ARM-type_fold,superfamily_UBA-like,pirsf_IKI3	-	no_errors	IKBKAP	HGNC	ENSG00000070061	tier1	-	-	58	0	0.00	30	16	34.78	120	0	0.00	91	33	26.40
AVIL	0	genome.wustl.edu	37	12	58207134	58207134	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	12	58207134	58207134	G	C	SNP	AVIL	ENST00000257861	human	ensembl	74_37	-1	known	missense	c.214	p.Q72E	1.000	pfam_Gelsolin_dom,smart_Villin/Gelsolin	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin/Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Villin/Gelsolin	-	no_errors	AVIL	HGNC	ENSG00000135407	tier1	-	-	17	0	0.00	330	128	27.95	30	0	0.00	1108	310	21.80
CSRNP3	0	genome.wustl.edu	37	2	166536009	166536009	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	2	166536009	166536009	G	A	SNP	CSRNP3	ENST00000314499	human	ensembl	74_37	+1	known	missense	c.1504	p.V502I	0.893	NULL	prints_Cys/Ser-rich_nuc_prot	-	no_errors	CSRNP3	HGNC	ENSG00000178662	tier1	-	-	27	0	0.00	12	12	50.00	59	0	0.00	32	29	47.54
LINC00846	0	genome.wustl.edu	37	21	33947970	33947970	+	R	SNP	G	G	A			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	21	33947970	33947970	G	A	SNP	LINC00846	ENST00000334165	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	LINC00846	HGNC	ENSG00000186842	tier1	-	-	41	0	0.00	15	9	37.50	83	0	0.00	56	35	38.46
RPF2	0	genome.wustl.edu	37	6	111346637	111346637	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	6	111346637	111346637	C	G	SNP	RPF2	ENST00000441448	human	ensembl	74_37	+1	known	missense	c.773	p.T258S	1.000	NULL	pfam_Brix,superfamily_Anticodon-bd,smart_Brix,pfscan_Brix	-	no_errors	RPF2	HGNC	ENSG00000197498	tier1	-	-	30	0	0.00	13	15	53.57	43	0	0.00	23	9	28.12
EYA4	0	genome.wustl.edu	37	6	133804184	133804184	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	6	133804184	133804184	G	A	SNP	EYA4	ENST00000355167	human	ensembl	74_37	+1	known	nonsense	c.1122	p.W374*	1.000	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_EYA	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_EYA	-	no_errors	EYA4	HGNC	ENSG00000112319	tier1	-	-	62	0	0.00	34	4	10.53	76	0	0.00	58	9	13.24
SYNE1	0	genome.wustl.edu	37	6	152697665	152697665	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	6	152697665	152697665	G	A	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	nonsense	c.9175	p.Q3059*	1.000	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	tier1	-	-	103	0	0.00	48	27	36.00	104	0	0.00	50	21	29.58
FRK	0	genome.wustl.edu	37	6	116381270	116381270	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	6	116381270	116381270	G	A	SNP	FRK	ENST00000606080	human	ensembl	74_37	-1	known	missense	c.205	p.L69F	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	FRK	HGNC	ENSG00000111816	tier1	-	-	26	0	0.00	15	15	50.00	126	0	0.00	62	30	32.61
AVIL	0	genome.wustl.edu	37	12	58207180	58207180	+	Silent	SNP	G	G	A			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	12	58207180	58207180	G	A	SNP	AVIL	ENST00000257861	human	ensembl	74_37	-1	known	silent	c.168	p.S56	1.000	pfam_Gelsolin_dom,smart_Villin/Gelsolin	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin/Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Villin/Gelsolin	-	no_errors	AVIL	HGNC	ENSG00000135407	tier1	-	-	11	0	0.00	269	104	27.88	29	0	0.00	1159	318	21.49
SPR	0	genome.wustl.edu	37	2	73115591	73115591	+	Silent	SNP	C	C	T			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	2	73115591	73115591	C	T	SNP	SPR	ENST00000234454	human	ensembl	74_37	+1	known	silent	c.453	p.T151	0.000	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,tigrfam_Sepiapterin_red	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,tigrfam_Sepiapterin_red	-	no_errors	SPR	HGNC	ENSG00000116096	tier1	-	-	54	0	0.00	13	14	51.85	107	0	0.00	54	33	37.50
BTN1A1	0	genome.wustl.edu	37	6	26508941	26508941	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	6	26508941	26508941	G	A	SNP	BTN1A1	ENST00000244513	human	ensembl	74_37	+1	known	missense	c.1120	p.V374M	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Ig_V-set,pfam_CD80_C2-set,superfamily_ConA-like_lec_gl_sf,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Ig-like_dom,prints_Butyrophylin	-	no_errors	BTN1A1	HGNC	ENSG00000124557	tier1	-	-	44	0	0.00	20	12	37.50	82	0	0.00	43	30	41.10
CATSPER1	0	genome.wustl.edu	37	11	65793082	65793082	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	11	65793082	65793082	G	A	SNP	CATSPER1	ENST00000312106	human	ensembl	74_37	-1	known	nonsense	c.769	p.Q257*	0.000	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel	-	no_errors	CATSPER1	HGNC	ENSG00000175294	tier1	-	-	18	0	0.00	4	5	55.56	74	0	0.00	51	17	25.00
NUTM2B	0	genome.wustl.edu	37	10	81463657	81463657	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	10	81463657	81463657	T	C	SNP	NUTM2B	ENST00000429828	human	ensembl	74_37	+1	known	missense	c.292	p.S98P	0.000	NULL	NULL	-	no_errors	NUTM2B	HGNC	ENSG00000188199	tier1	-	-	54	0	0.00	19	7	26.92	19	0	0.00	15	4	21.05
SLC35A5	0	genome.wustl.edu	37	3	112300024	112300024	+	Splice_Site	SNP	A	A	G			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	3	112300024	112300024	A	G	SNP	SLC35A5	ENST00000261034	human	ensembl	74_37	+1	known	splice_site	c.590-2	e6-2	0.998	-	-	-	no_errors	SLC35A5	HGNC	ENSG00000138459	tier1	-	-	39	0	0.00	20	6	23.08	116	1	0.85	50	18	26.47
SMCR5	0	genome.wustl.edu	37	17	17682439	17682442	+	R	DEL	ACAC	ACAC	-			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	ACAC	ACAC	ACAC	-	ACAC	ACAC	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	17	17682439	17682442	ACAC	-	DEL	SMCR5	ENST00000543475	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002:0.004:0.000:0.001	-	-	-	no_errors	SMCR5	HGNC	ENSG00000226746	tier1			45	0	0.00	16	8	33.33	107	0	0.00	87	19	17.92
CHM	0	genome.wustl.edu	37	X	85282554	85282554	+	Silent	SNP	A	A	C			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	X	85282554	85282554	A	C	SNP	CHM	ENST00000357749	human	ensembl	74_37	-1	known	silent	c.57	p.P19	1.000	pfam_GDP_dissociation_inhibitor,pirsf_Rab_geranylTrfase_A_euk,prints_GDP_dissociation_inhibitor	pfam_GDP_dissociation_inhibitor,pirsf_Rab_geranylTrfase_A_euk,prints_Rab_escort,prints_GDP_dissociation_inhibitor	-	no_errors	CHM	HGNC	ENSG00000188419	tier1	-	-	141	0	0.00	11	67	85.90	24	0	0.00	3	14	82.35
SHROOM2	0	genome.wustl.edu	37	X	9862480	9862480	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	X	9862480	9862480	G	A	SNP	SHROOM2	ENST00000380913	human	ensembl	74_37	+1	known	missense	c.532	p.V178I	0.932	NULL	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM2	HGNC	ENSG00000146950	tier1	-	-	12	0	0.00	2	6	75.00	14	0	0.00	5	16	76.19
ZNF853	0	genome.wustl.edu	37	7	6661387	6661389	+	In_Frame_Del	DEL	GCA	GCA	-			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	GCA	GCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	7	6661387	6661389	GCA	-	DEL	ZNF853	ENST00000457543	human	ensembl	74_37	+1	known	in_frame_del	c.765_767	p.Q259in_frame_del	0.002:0.000:0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF853	HGNC	ENSG00000236609	tier1			47	0	0.00	21	2	8.70	16	0	0.00	7	0	0.00
MUC4	0	genome.wustl.edu	37	3	195515372	195515372	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	3	195515372	195515372	C	T	SNP	MUC4	ENST00000463781	human	ensembl	74_37	-1	known	missense	c.3079	p.V1027I	0.000	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EG-like_dom,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	tier1	-	-	86	0	0.00	37	4	9.76	2	0	0.00	1	0	0.00
CLVS1	0	genome.wustl.edu	37	8	62412295	62412295	+	R	DEL	T	T	-			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	8	62412295	62412295	T	-	DEL	CLVS1	ENST00000518858	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	CLVS1	HGNC	ENSG00000177182	tier1			48	0	0.00	23	2	8.00	79	0	0.00	65	2	2.99
