Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
KHNYN	0	genome.wustl.edu	37	14	24900739	24900739	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	14	24900739	24900739	T	A	SNP	KHNYN	ENST00000251343	human	ensembl	74_37	+1	known	missense	c.272	p.I91N	1.000	NULL	pfam_RNase_Zc3h12	-	no_errors	KHNYN	HGNC	ENSG00000100441	tier1	-	-	60	0	0.00	20	11	35.48	135	0	0.00	74	20	21.28
APBA1	0	genome.wustl.edu	37	9	72131055	72131055	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	9	72131055	72131055	C	G	SNP	APBA1	ENST00000265381	human	ensembl	74_37	-1	known	missense	c.1072	p.E358Q	1.000	NULL	pfam_PTB/PI_dom,pfam_PDZ,superfamily_PDZ,smart_PTB/PI_dom,smart_PDZ,pfscan_PDZ,pfscan_PTB/PI_dom	-	no_errors	APBA1	HGNC	ENSG00000107282	tier1	-	-	68	0	0.00	27	19	41.30	83	0	0.00	20	24	54.55
KRBOX1	0	genome.wustl.edu	37	3	42984102	42984102	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	3	42984102	42984102	G	A	SNP	KRBOX1	ENST00000426937	human	ensembl	74_37	+1	putative	missense	c.350	p.R117Q	0.000	NULL	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	-	no_errors	KRBOX1	HGNC	ENSG00000240747	tier1	-	-	181	0	0.00	64	6	8.57	90	0	0.00	34	5	12.50
TRAPPC9	0	genome.wustl.edu	37	8	141461086	141461086	+	Silent	SNP	G	G	A			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	8	141461086	141461086	G	A	SNP	TRAPPC9	ENST00000389328	human	ensembl	74_37	-1	known	silent	c.681	p.R227	0.837	NULL	pfam_TRAPP_II_complex_Trs120	-	no_errors	TRAPPC9	HGNC	ENSG00000167632	tier1	-	-	54	0	0.00	51	8	13.56	43	0	0.00	41	6	12.77
ZSCAN12	0	genome.wustl.edu	37	6	28358731	28358731	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	6	28358731	28358731	C	G	SNP	ZSCAN12	ENST00000361028	human	ensembl	74_37	-1	known	missense	c.1336	p.E446Q	0.900	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN12	HGNC	ENSG00000158691	tier1	-	-	34	0	0.00	20	5	20.00	171	0	0.00	76	22	22.45
DMD	0	genome.wustl.edu	37	X	32328228	32328228	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	X	32328228	32328228	C	A	SNP	DMD	ENST00000357033	human	ensembl	74_37	-1	known	missense	c.6088	p.D2030Y	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	tier1	-	-	94	0	0.00	23	11	32.35	143	0	0.00	19	10	34.48
TSPYL6	0	genome.wustl.edu	37	2	54482087	54482087	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	2	54482087	54482087	A	G	SNP	TSPYL6	ENST00000317802	human	ensembl	74_37	-1	known	missense	c.1202	p.I401T	0.613	NULL	pfam_P_family	-	no_errors	TSPYL6	HGNC	ENSG00000178021	tier1	-	-	90	0	0.00	38	22	36.67	189	0	0.00	70	47	39.83
GUSBP11	0	genome.wustl.edu	37	22	23980848	23980848	+	R	SNP	G	G	A			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	22	23980848	23980848	G	A	SNP	GUSBP11	ENST00000422506	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.212	-	-	-	no_errors	GUSBP11	HGNC	ENSG00000228315	tier1	-	-	80	0	0.00	42	14	25.00	10	0	0.00	10	2	16.67
LRFN5	0	genome.wustl.edu	37	14	42356845	42356845	+	Silent	SNP	C	C	T			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	14	42356845	42356845	C	T	SNP	LRFN5	ENST00000298119	human	ensembl	74_37	+1	known	silent	c.1017	p.N339	0.999	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRFN5	HGNC	ENSG00000165379	tier1	-	-	112	0	0.00	67	6	8.22	198	0	0.00	86	11	11.34
NCOA4	0	genome.wustl.edu	37	10	51585393	51585393	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	10	51585393	51585393	C	T	SNP	NCOA4	ENST00000452682	human	ensembl	74_37	+1	known	missense	c.1540	p.L514F	1.000	NULL	pfam_ARA70	-	no_errors	NCOA4	HGNC	ENSG00000138293	tier1	-	-	121	0	0.00	45	46	50.55	76	0	0.00	17	27	61.36
SCN8A	0	genome.wustl.edu	37	12	52162854	52162854	+	Missense_Mutation	SNP	A	A	C			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	12	52162854	52162854	A	C	SNP	SCN8A	ENST00000354534	human	ensembl	74_37	+1	known	missense	c.3107	p.E1036A	1.000	pfam_Na_trans_assoc,prints_Na_channel_a8su	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,prints_Na_channel_a8su,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN8A	HGNC	ENSG00000196876	tier1	-	-	43	0	0.00	36	6	14.29	92	0	0.00	43	5	10.42
WNT2	0	genome.wustl.edu	37	7	116960808	116960808	+	Silent	SNP	G	G	A			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	7	116960808	116960808	G	A	SNP	WNT2	ENST00000265441	human	ensembl	74_37	-1	known	silent	c.123	p.C41	1.000	pfam_Wnt,prints_Wnt2	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt2	-	no_errors	WNT2	HGNC	ENSG00000105989	tier1	rs140391205	-	22	0	0.00	10	6	37.50	63	0	0.00	21	5	19.23
SYNJ2BP	0	genome.wustl.edu	37	14	70839377	70839377	+	R	SNP	C	C	G			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	14	70839377	70839377	C	G	SNP	SYNJ2BP	ENST00000554216	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.479	-	-	-	no_errors	SYNJ2BP	HGNC	ENSG00000213463	tier1	-	-	82	0	0.00	54	12	18.18	106	0	0.00	33	6	15.38
TANGO6	0	genome.wustl.edu	37	16	68894024	68894024	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	16	68894024	68894024	G	A	SNP	TANGO6	ENST00000261778	human	ensembl	74_37	+1	known	missense	c.332	p.R111H	0.000	NULL	pfam_DUF2435,pfam_DUF2411,superfamily_ARM-type_fold	-	no_errors	TANGO6	HGNC	ENSG00000103047	tier1	rs199965791	-	56	0	0.00	41	15	26.79	158	0	0.00	106	30	22.06
ZNF707	0	genome.wustl.edu	37	8	144776688	144776688	+	Silent	SNP	C	C	T			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	8	144776688	144776688	C	T	SNP	ZNF707	ENST00000358656	human	ensembl	74_37	+1	known	silent	c.1104	p.H368	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF707	HGNC	ENSG00000181135	tier1	-	-	99	0	0.00	41	36	46.75	53	0	0.00	35	19	35.19
GPR124	0	genome.wustl.edu	37	8	37696483	37696483	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	8	37696483	37696483	G	A	SNP	GPR124	ENST00000412232	human	ensembl	74_37	+1	known	missense	c.2269	p.A757T	0.016	pfscan_GPS_dom	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,pfscan_GPS_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,pfscan_Ig-like_dom	-	no_errors	GPR124	HGNC	ENSG00000020181	tier1	rs143113584	-	70	0	0.00	50	11	18.03	39	0	0.00	27	7	20.59
SCN2A	0	genome.wustl.edu	37	2	166245201	166245201	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	2	166245201	166245201	C	T	SNP	SCN2A	ENST00000283256	human	ensembl	74_37	+1	known	missense	c.4885	p.R1629C	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531	tier1	-	-	220	0	0.00	132	23	14.84	93	1	1.06	34	9	20.93
SLC17A4	0	genome.wustl.edu	37	6	25777120	25777120	+	Silent	SNP	C	C	T			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	6	25777120	25777120	C	T	SNP	SLC17A4	ENST00000377905	human	ensembl	74_37	+1	known	silent	c.1201	p.L401	0.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A4	HGNC	ENSG00000146039	tier1	-	-	38	0	0.00	21	7	25.00	59	0	0.00	45	12	21.05
PLA2G4E	0	genome.wustl.edu	37	15	42302375	42302375	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	15	42302375	42302375	G	A	SNP	PLA2G4E	ENST00000413860	human	ensembl	74_37	-1	known	missense	c.71	p.P24L	0.006	NULL	pfam_LysoPLipase_cat_dom,pfam_C2_dom,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_dom,smart_C2_dom,smart_LysoPLipase_cat_dom,pfscan_C2_dom,pfscan_LysoPLipase_cat_dom	-	no_errors	PLA2G4E	HGNC	ENSG00000188089	tier1	-	-	161	0	0.00	136	18	11.61	65	1	1.52	38	9	19.15
SP140	0	genome.wustl.edu	37	2	231109717	231109717	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	2	231109717	231109717	T	C	SNP	SP140	ENST00000392045	human	ensembl	74_37	+1	known	missense	c.586	p.S196P	0.001	NULL	pfam_Sp100,pfam_SAND_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_SAND_dom-like,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_SAND_dom,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_SAND_dom,pfscan_Bromodomain	-	no_errors	SP140	HGNC	ENSG00000079263	tier1	-	-	58	0	0.00	26	17	39.53	124	0	0.00	49	8	14.04
TULP2	0	genome.wustl.edu	37	19	49399789	49399789	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	19	49399789	49399789	G	C	SNP	TULP2	ENST00000221399	human	ensembl	74_37	-1	known	missense	c.109	p.R37G	1.000	prints_Tubby_N	pfam_Tubby_C,superfamily_Tubby_C-like,prints_Tubby_C,prints_Tubby_N	-	no_errors	TULP2	HGNC	ENSG00000104804	tier1	-	-	111	0	0.00	90	27	23.08	50	0	0.00	36	8	18.18
PMS1	0	genome.wustl.edu	37	2	190660493	190660495	+	Splice_Site	DEL	AGG	AGG	-			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	AGG	AGG	AGG	-	AGG	AGG	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	2	190660493	190660495	AGG	-	DEL	PMS1	ENST00000441310	human	ensembl	74_37	+1	known	splice_site_del	c.133-2_133-1	e2-1	0.998:1.000:1.000	-	-	-	no_errors	PMS1	HGNC	ENSG00000064933	tier1			189	0	0.00	105	14	11.76	99	0	0.00	49	7	12.50
ABTB2	0	genome.wustl.edu	37	11	34194817	34194817	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	11	34194817	34194817	G	A	SNP	ABTB2	ENST00000435224	human	ensembl	74_37	-1	known	missense	c.1282	p.R428C	1.000	NULL	pfam_BTB_POZ,pfam_Ankyrin_rpt,superfamily_Histone-fold,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like	-	no_errors	ABTB2	HGNC	ENSG00000166016	tier1	-	-	93	0	0.00	57	16	21.92	14	0	0.00	3	2	40.00
LOC401127	0	genome.wustl.edu	37	4	39482041	39482041	+	R	SNP	C	C	T			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	4	39482041	39482041	C	T	SNP	LOC401127	ENST00000513652	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.015	-	-	-	no_errors	RP11-472B18.1	Clone_based_vega_gene	ENSG00000224097	tier1	-	-	23	0	0.00	27	5	15.62	9	0	0.00	0	2	100.00
SYNPO2L	0	genome.wustl.edu	37	10	75407274	75407274	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	10	75407274	75407274	C	A	SNP	SYNPO2L	ENST00000394810	human	ensembl	74_37	-1	known	missense	c.2136	p.K712N	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SYNPO2L	HGNC	ENSG00000166317	tier1	-	-	15	0	0.00	19	6	24.00	7	0	0.00	2	2	50.00
VPS39	0	genome.wustl.edu	37	15	42479973	42479973	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	15	42479973	42479973	C	T	SNP	VPS39	ENST00000348544	human	ensembl	74_37	-1	known	missense	c.457	p.E153K	1.000	pfam_Citron,superfamily_WD40_repeat_dom,smart_Citron	pfam_Citron,pfam_VPS39/TGF_beta_rcpt-assoc_2,pfam_VPS39/TGF_beta_rcpt-assoc_1,pfam_Clathrin_H-chain/VPS_repeat,superfamily_WD40_repeat_dom,smart_Citron	-	no_errors	VPS39	HGNC	ENSG00000166887	tier1	-	-	54	0	0.00	38	4	9.52	147	0	0.00	78	8	9.30
KMT2C	0	genome.wustl.edu	37	7	151833996	151833996	+	Missense_Mutation	SNP	T	T	G			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	7	151833996	151833996	T	G	SNP	KMT2C	ENST00000355193	human	ensembl	74_37	-1	known	missense	c.14828	p.Y4943S	1.000	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2C	HGNC	ENSG00000055609	tier1	-	-	44	0	0.00	34	4	10.53	100	0	0.00	57	3	4.92
ARMCX1	0	genome.wustl.edu	37	X	100808828	100808828	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	X	100808828	100808828	G	T	SNP	ARMCX1	ENST00000372829	human	ensembl	74_37	+1	known	missense	c.915	p.Q305H	1.000	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	pfam_ARM-rpt_dom,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMCX1	HGNC	ENSG00000126947	tier1	-	-	53	0	0.00	22	3	12.00	203	0	0.00	61	2	3.17
LAMA1	0	genome.wustl.edu	37	18	7015825	7015825	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-AB3B-01A-11D-A417-09	TCGA-DX-AB3B-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9b24025-5517-4601-92e6-ac6efaa9a84e	3b8655dd-4366-43f9-bac6-f57cc09f3ea4	18	7015825	7015825	C	A	SNP	LAMA1	ENST00000389658	human	ensembl	74_37	-1	known	missense	c.3022	p.D1008Y	1.000	pfam_EGF_laminin,smart_EG-like_dom,smart_EGF_laminin,pfscan_EGF_laminin	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680	tier1	-	-	45	0	0.00	35	4	10.26	83	0	0.00	43	2	4.44
