Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
COIL	0	genome.wustl.edu	37	17	55028339	55028339	+	Silent	SNP	T	T	C			TCGA-FX-A8OO-01A-11D-A36J-09	TCGA-FX-A8OO-10A-01D-A36M-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3def8194-e7e6-4872-be76-50bedf6b1339	bdc4ce01-8e6f-4cfb-9850-8e48d99cc23d	17	55028339	55028339	T	C	SNP	COIL	ENST00000240316	human	ensembl	74_37	-1	known	silent	c.264	p.R88	0.004	NULL	NULL	-	no_errors	COIL	HGNC	ENSG00000121058	tier1	-	-	29	0	0.00	17	18	51.43	45	0	0.00	25	21	45.65
ACTN4	0	genome.wustl.edu	37	19	39195638	39195638	+	Silent	SNP	C	C	T			TCGA-FX-A8OO-01A-11D-A36J-09	TCGA-FX-A8OO-10A-01D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3def8194-e7e6-4872-be76-50bedf6b1339	bdc4ce01-8e6f-4cfb-9850-8e48d99cc23d	19	39195638	39195638	C	T	SNP	ACTN4	ENST00000252699	human	ensembl	74_37	+1	known	silent	c.462	p.A154	1.000	superfamily_CH-domain,pfscan_CH-domain	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	ACTN4	HGNC	ENSG00000130402	tier1	-	-	80	0	0.00	35	33	48.53	97	1	1.02	56	22	28.21
NUP210P1	0	genome.wustl.edu	37	3	126382250	126382250	+	R	SNP	C	C	T			TCGA-FX-A8OO-01A-11D-A36J-09	TCGA-FX-A8OO-10A-01D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3def8194-e7e6-4872-be76-50bedf6b1339	bdc4ce01-8e6f-4cfb-9850-8e48d99cc23d	3	126382250	126382250	C	T	SNP	NUP210P1	ENST00000357061	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.424	-	-	-	no_errors	NUP210P1	HGNC	ENSG00000198284	tier1	-	-	38	0	0.00	19	27	58.70	40	0	0.00	33	28	45.90
BNC2	0	genome.wustl.edu	37	9	16552635	16552635	+	Missense_Mutation	SNP	T	T	A			TCGA-FX-A8OO-01A-11D-A36J-09	TCGA-FX-A8OO-10A-01D-A36M-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3def8194-e7e6-4872-be76-50bedf6b1339	bdc4ce01-8e6f-4cfb-9850-8e48d99cc23d	9	16552635	16552635	T	A	SNP	BNC2	ENST00000380672	human	ensembl	74_37	-1	known	missense	c.562	p.I188F	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BNC2	HGNC	ENSG00000173068	tier1	-	-	45	0	0.00	36	22	37.93	70	0	0.00	43	29	40.28
RCC1	0	genome.wustl.edu	37	1	28858479	28858479	+	Missense_Mutation	SNP	G	G	T			TCGA-FX-A8OO-01A-11D-A36J-09	TCGA-FX-A8OO-10A-01D-A36M-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3def8194-e7e6-4872-be76-50bedf6b1339	bdc4ce01-8e6f-4cfb-9850-8e48d99cc23d	1	28858479	28858479	G	T	SNP	RCC1	ENST00000373831	human	ensembl	74_37	+1	known	missense	c.331	p.V111L	1.000	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,pfscan_Reg_chr_condens,prints_Reg_chr_condens	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	RCC1	HGNC	ENSG00000180198	tier1	-	-	63	0	0.00	38	25	39.68	70	0	0.00	34	28	45.16
SLFN12L	0	genome.wustl.edu	37	17	33806526	33806526	+	Nonsense_Mutation	SNP	G	G	A			TCGA-FX-A8OO-01A-11D-A36J-09	TCGA-FX-A8OO-10A-01D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3def8194-e7e6-4872-be76-50bedf6b1339	bdc4ce01-8e6f-4cfb-9850-8e48d99cc23d	17	33806526	33806526	G	A	SNP	SLFN12L	ENST00000449046	human	ensembl	74_37	-1	known	nonsense	c.796	p.R266*	0.000	pfam_ATPase_AAA-4	pfam_ATPase_AAA-4	-	no_errors	SLFN12L	HGNC	ENSG00000205045	tier1	-	-	62	0	0.00	44	42	48.84	132	0	0.00	58	45	43.69
LRRFIP2	0	genome.wustl.edu	37	3	37096646	37096646	+	Silent	SNP	A	A	G			TCGA-FX-A8OO-01A-11D-A36J-09	TCGA-FX-A8OO-10A-01D-A36M-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3def8194-e7e6-4872-be76-50bedf6b1339	bdc4ce01-8e6f-4cfb-9850-8e48d99cc23d	3	37096646	37096646	A	G	SNP	LRRFIP2	ENST00000336686	human	ensembl	74_37	-1	known	silent	c.1881	p.N627	0.995	pfam_Leu-rich_rep_flightless-int_pr,superfamily_Prefoldin	pfam_Leu-rich_rep_flightless-int_pr,superfamily_bHLH_dom,superfamily_Prefoldin	-	no_errors	LRRFIP2	HGNC	ENSG00000093167	tier1	rs201693185	-	30	0	0.00	28	19	40.43	91	0	0.00	41	35	46.05
NRXN1	0	genome.wustl.edu	37	2	50148734	50148734	+	R	SNP	G	G	T			TCGA-FX-A8OO-01A-11D-A36J-09	TCGA-FX-A8OO-10A-01D-A36M-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3def8194-e7e6-4872-be76-50bedf6b1339	bdc4ce01-8e6f-4cfb-9850-8e48d99cc23d	2	50148734	50148734	G	T	SNP	NRXN1	ENST00000484192	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.985	-	-	-	no_errors	NRXN1	HGNC	ENSG00000179915	tier1	-	-	93	0	0.00	59	42	41.58	168	0	0.00	45	55	55.00
LOXL2	0	genome.wustl.edu	37	8	23225664	23225664	+	Silent	SNP	G	G	A			TCGA-FX-A8OO-01A-11D-A36J-09	TCGA-FX-A8OO-10A-01D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3def8194-e7e6-4872-be76-50bedf6b1339	bdc4ce01-8e6f-4cfb-9850-8e48d99cc23d	8	23225664	23225664	G	A	SNP	LOXL2	ENST00000389131	human	ensembl	74_37	-1	known	silent	c.201	p.H67	1.000	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_Lysyl_oxidase,pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_Lysyl_oxidase,prints_SRCR	-	no_errors	LOXL2	HGNC	ENSG00000134013	tier1	-	-	62	0	0.00	39	36	48.00	60	0	0.00	26	8	23.53
KCNJ2	0	genome.wustl.edu	37	17	68172115	68172115	+	Missense_Mutation	SNP	G	G	A			TCGA-FX-A8OO-01A-11D-A36J-09	TCGA-FX-A8OO-10A-01D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3def8194-e7e6-4872-be76-50bedf6b1339	bdc4ce01-8e6f-4cfb-9850-8e48d99cc23d	17	68172115	68172115	G	A	SNP	KCNJ2	ENST00000243457	human	ensembl	74_37	+1	known	missense	c.935	p.R312H	1.000	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,pfam_K_chnl_inward-rec_Kir_N,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir2.1	-	no_errors	KCNJ2	HGNC	ENSG00000123700	tier1	-	-	56	0	0.00	29	23	44.23	66	0	0.00	30	34	53.12
FBN2	0	genome.wustl.edu	37	5	127713448	127713448	+	Missense_Mutation	SNP	C	C	T			TCGA-FX-A8OO-01A-11D-A36J-09	TCGA-FX-A8OO-10A-01D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3def8194-e7e6-4872-be76-50bedf6b1339	bdc4ce01-8e6f-4cfb-9850-8e48d99cc23d	5	127713448	127713448	C	T	SNP	FBN2	ENST00000262464	human	ensembl	74_37	-1	known	missense	c.1846	p.V616I	1.000	pirsf_FBN,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pirsf_FBN,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Cadherin-like,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	FBN2	HGNC	ENSG00000138829	tier1	-	-	70	0	0.00	47	28	37.33	121	0	0.00	63	64	49.61
GPR110	0	genome.wustl.edu	37	6	46991854	46991854	+	Missense_Mutation	SNP	G	G	A			TCGA-FX-A8OO-01A-11D-A36J-09	TCGA-FX-A8OO-10A-01D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3def8194-e7e6-4872-be76-50bedf6b1339	bdc4ce01-8e6f-4cfb-9850-8e48d99cc23d	6	46991854	46991854	G	A	SNP	GPR110	ENST00000371253	human	ensembl	74_37	-1	known	missense	c.377	p.T126M	0.001	NULL	pfam_GPCR_2_secretin-like,pfam_SEA_dom,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_Ig-hepta_rcpt	-	no_errors	GPR110	HGNC	ENSG00000153292	tier1	rs200254260	GMAF=0.0005	57	0	0.00	37	27	42.19	108	0	0.00	59	53	47.32
TAF1	0	genome.wustl.edu	37	X	70587351	70587351	+	Missense_Mutation	SNP	A	A	T			TCGA-FX-A8OO-01A-11D-A36J-09	TCGA-FX-A8OO-10A-01D-A36M-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3def8194-e7e6-4872-be76-50bedf6b1339	bdc4ce01-8e6f-4cfb-9850-8e48d99cc23d	X	70587351	70587351	A	T	SNP	TAF1	ENST00000449580	human	ensembl	74_37	+1	known	missense	c.183	p.E61D	0.997	pirsf_TAF1_animal,pfam_TAF_II_230-bd,superfamily_TAF_II_230-bd	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1	HGNC	ENSG00000147133	tier1	-	-	60	0	0.00	44	17	27.87	138	0	0.00	80	59	42.45
COL20A1	0	genome.wustl.edu	37	20	61952385	61952385	+	Silent	SNP	C	C	T			TCGA-FX-A8OO-01A-11D-A36J-09	TCGA-FX-A8OO-10A-01D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3def8194-e7e6-4872-be76-50bedf6b1339	bdc4ce01-8e6f-4cfb-9850-8e48d99cc23d	20	61952385	61952385	C	T	SNP	COL20A1	ENST00000326996	human	ensembl	74_37	+1	known	silent	c.3174	p.P1058	0.008	NULL	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL20A1	HGNC	ENSG00000101203	tier1	-	-	146	1	0.68	81	82	50.31	63	0	0.00	25	30	53.57
YEATS2	0	genome.wustl.edu	37	3	183495458	183495458	+	Missense_Mutation	SNP	C	C	G			TCGA-FX-A8OO-01A-11D-A36J-09	TCGA-FX-A8OO-10A-01D-A36M-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3def8194-e7e6-4872-be76-50bedf6b1339	bdc4ce01-8e6f-4cfb-9850-8e48d99cc23d	3	183495458	183495458	C	G	SNP	YEATS2	ENST00000305135	human	ensembl	74_37	+1	known	missense	c.2706	p.I902M	1.000	NULL	pfam_YEATS,pfscan_YEATS	-	no_errors	YEATS2	HGNC	ENSG00000163872	tier1	-	-	73	0	0.00	42	37	46.84	167	0	0.00	74	55	42.31
ZNF114	0	genome.wustl.edu	37	19	48789076	48789076	+	Missense_Mutation	SNP	A	A	T			TCGA-FX-A8OO-01A-11D-A36J-09	TCGA-FX-A8OO-10A-01D-A36M-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3def8194-e7e6-4872-be76-50bedf6b1339	bdc4ce01-8e6f-4cfb-9850-8e48d99cc23d	19	48789076	48789076	A	T	SNP	ZNF114	ENST00000315849	human	ensembl	74_37	+1	known	missense	c.195	p.K65N	0.000	pfscan_Krueppel-associated_box	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF114	HGNC	ENSG00000178150	tier1	-	-	59	0	0.00	36	40	52.63	145	0	0.00	60	63	50.00
SF1	0	genome.wustl.edu	37	11	64544038	64544038	+	Missense_Mutation	SNP	G	G	A			TCGA-FX-A8OO-01A-11D-A36J-09	TCGA-FX-A8OO-10A-01D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3def8194-e7e6-4872-be76-50bedf6b1339	bdc4ce01-8e6f-4cfb-9850-8e48d99cc23d	11	64544038	64544038	G	A	SNP	SF1	ENST00000377390	human	ensembl	74_37	-1	known	missense	c.92	p.T31I	0.998	NULL	pfam_KH_dom_type_1,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_KH_dom,smart_Znf_CCHC,pfscan_Znf_CCHC,pfscan_KH_dom_type_1	-	no_errors	SF1	HGNC	ENSG00000168066	tier1	-	-	64	0	0.00	31	32	50.79	105	0	0.00	47	35	42.68
OR5AS1	0	genome.wustl.edu	37	11	55798441	55798441	+	Missense_Mutation	SNP	C	C	A			TCGA-FX-A8OO-01A-11D-A36J-09	TCGA-FX-A8OO-10A-01D-A36M-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3def8194-e7e6-4872-be76-50bedf6b1339	bdc4ce01-8e6f-4cfb-9850-8e48d99cc23d	11	55798441	55798441	C	A	SNP	OR5AS1	ENST00000313555	human	ensembl	74_37	+1	known	missense	c.547	p.P183T	0.576	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5AS1	HGNC	ENSG00000181785	tier1	-	-	12	0	0.00	16	15	48.39	98	0	0.00	39	30	43.48
STXBP5L	0	genome.wustl.edu	37	3	120941941	120941941	+	Missense_Mutation	SNP	G	G	T			TCGA-FX-A8OO-01A-11D-A36J-09	TCGA-FX-A8OO-10A-01D-A36M-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3def8194-e7e6-4872-be76-50bedf6b1339	bdc4ce01-8e6f-4cfb-9850-8e48d99cc23d	3	120941941	120941941	G	T	SNP	STXBP5L	ENST00000273666	human	ensembl	74_37	+1	known	missense	c.1048	p.V350L	1.000	pfam_LLGL2,superfamily_WD40_repeat_dom	pfam_LLGL2,pfam_WD40_repeat,pfam_Lgl_C_dom,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,pfscan_Synaptobrevin,prints_Lethal2_giant	-	no_errors	STXBP5L	HGNC	ENSG00000145087	tier1	-	-	35	0	0.00	24	23	48.94	153	0	0.00	71	53	42.74
ACSL4	0	genome.wustl.edu	37	X	108904872	108904872	+	Missense_Mutation	SNP	G	G	A			TCGA-FX-A8OO-01A-11D-A36J-09	TCGA-FX-A8OO-10A-01D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3def8194-e7e6-4872-be76-50bedf6b1339	bdc4ce01-8e6f-4cfb-9850-8e48d99cc23d	X	108904872	108904872	G	A	SNP	ACSL4	ENST00000340800	human	ensembl	74_37	-1	known	missense	c.1708	p.R570C	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSL4	HGNC	ENSG00000068366	tier1	-	-	39	0	0.00	29	25	46.30	108	0	0.00	43	38	46.91
ASPM	0	genome.wustl.edu	37	1	197071130	197071130	+	Missense_Mutation	SNP	C	C	A			TCGA-FX-A8OO-01A-11D-A36J-09	TCGA-FX-A8OO-10A-01D-A36M-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3def8194-e7e6-4872-be76-50bedf6b1339	bdc4ce01-8e6f-4cfb-9850-8e48d99cc23d	1	197071130	197071130	C	A	SNP	ASPM	ENST00000367409	human	ensembl	74_37	-1	known	missense	c.7251	p.R2417S	0.022	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279	tier1	-	-	54	0	0.00	25	54	68.35	134	0	0.00	67	129	65.82
TTN	0	genome.wustl.edu	37	2	179416435	179416435	+	Missense_Mutation	SNP	G	G	C			TCGA-FX-A8OO-01A-11D-A36J-09	TCGA-FX-A8OO-10A-01D-A36M-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3def8194-e7e6-4872-be76-50bedf6b1339	bdc4ce01-8e6f-4cfb-9850-8e48d99cc23d	2	179416435	179416435	G	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.83488	p.R27830G	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657	tier1	-	-	62	0	0.00	35	32	47.76	207	0	0.00	76	53	40.77
MORC2	0	genome.wustl.edu	37	22	31328907	31328907	+	Missense_Mutation	SNP	C	C	T			TCGA-FX-A8OO-01A-11D-A36J-09	TCGA-FX-A8OO-10A-01D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3def8194-e7e6-4872-be76-50bedf6b1339	bdc4ce01-8e6f-4cfb-9850-8e48d99cc23d	22	31328907	31328907	C	T	SNP	MORC2	ENST00000397641	human	ensembl	74_37	-1	known	missense	c.2491	p.V831M	1.000	NULL	pfam_Znf_CW,pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,superfamily_Carb-bd_dom,pfscan_Znf_CW	-	no_errors	MORC2	HGNC	ENSG00000133422	tier1	-	-	49	0	0.00	41	26	38.81	110	0	0.00	52	40	43.48
PRADC1	0	genome.wustl.edu	37	2	73455974	73455974	+	Missense_Mutation	SNP	C	C	G			TCGA-FX-A8OO-01A-11D-A36J-09	TCGA-FX-A8OO-10A-01D-A36M-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3def8194-e7e6-4872-be76-50bedf6b1339	bdc4ce01-8e6f-4cfb-9850-8e48d99cc23d	2	73455974	73455974	C	G	SNP	PRADC1	ENST00000258083	human	ensembl	74_37	-1	known	missense	c.395	p.S132T	1.000	pfam_Protease-assoc_domain	pfam_Protease-assoc_domain	-	no_errors	PRADC1	HGNC	ENSG00000135617	tier1	-	-	53	0	0.00	35	28	44.44	70	0	0.00	31	30	49.18
CFP	0	genome.wustl.edu	37	X	47486725	47486725	+	Missense_Mutation	SNP	C	C	T			TCGA-FX-A8OO-01A-11D-A36J-09	TCGA-FX-A8OO-10A-01D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3def8194-e7e6-4872-be76-50bedf6b1339	bdc4ce01-8e6f-4cfb-9850-8e48d99cc23d	X	47486725	47486725	C	T	SNP	CFP	ENST00000247153	human	ensembl	74_37	-1	known	missense	c.581	p.G194E	1.000	superfamily_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	CFP	HGNC	ENSG00000126759	tier1	-	-	89	0	0.00	58	32	35.56	33	0	0.00	14	15	51.72
LUC7L3	0	genome.wustl.edu	37	17	48827881	48827881	+	Missense_Mutation	SNP	T	T	G			TCGA-FX-A8OO-01A-11D-A36J-09	TCGA-FX-A8OO-10A-01D-A36M-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3def8194-e7e6-4872-be76-50bedf6b1339	bdc4ce01-8e6f-4cfb-9850-8e48d99cc23d	17	48827881	48827881	T	G	SNP	LUC7L3	ENST00000240304	human	ensembl	74_37	+1	known	missense	c.1158	p.D386E	1.000	NULL	pfam_Luc7-rel	-	no_errors	LUC7L3	HGNC	ENSG00000108848	tier1	-	-	41	0	0.00	32	18	36.00	83	0	0.00	45	62	57.94
BTBD11	0	genome.wustl.edu	37	12	108004005	108004005	+	Missense_Mutation	SNP	C	C	T			TCGA-FX-A8OO-01A-11D-A36J-09	TCGA-FX-A8OO-10A-01D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3def8194-e7e6-4872-be76-50bedf6b1339	bdc4ce01-8e6f-4cfb-9850-8e48d99cc23d	12	108004005	108004005	C	T	SNP	BTBD11	ENST00000280758	human	ensembl	74_37	+1	known	missense	c.1682	p.A561V	1.000	NULL	pfam_Ankyrin_rpt,pfam_BTB_POZ,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,superfamily_Histone-fold,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like	-	no_errors	BTBD11	HGNC	ENSG00000151136	tier1	-	-	40	0	0.00	23	29	55.77	124	1	0.80	39	48	55.17
MLC1	0	genome.wustl.edu	37	22	50518372	50518372	+	Missense_Mutation	SNP	A	A	G			TCGA-FX-A8OO-01A-11D-A36J-09	TCGA-FX-A8OO-10A-01D-A36M-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3def8194-e7e6-4872-be76-50bedf6b1339	bdc4ce01-8e6f-4cfb-9850-8e48d99cc23d	22	50518372	50518372	A	G	SNP	MLC1	ENST00000311597	human	ensembl	74_37	-1	known	missense	c.398	p.L133P	0.997	NULL	NULL	-	no_errors	MLC1	HGNC	ENSG00000100427	tier1	-	-	69	0	0.00	48	37	43.53	186	1	0.53	73	59	44.70
KCNG4	0	genome.wustl.edu	37	16	84256307	84256307	+	Missense_Mutation	SNP	G	G	T			TCGA-FX-A8OO-01A-11D-A36J-09	TCGA-FX-A8OO-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3def8194-e7e6-4872-be76-50bedf6b1339	bdc4ce01-8e6f-4cfb-9850-8e48d99cc23d	16	84256307	84256307	G	T	SNP	KCNG4	ENST00000308251	human	ensembl	74_37	-1	known	missense	c.1076	p.T359K	1.000	pfam_Ion_trans_dom,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,prints_K_chnl,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCNG4	HGNC	ENSG00000168418	tier1	-	-	24	0	0.00	25	4	13.79	10	0	0.00	9	0	0.00
POU4F3	0	genome.wustl.edu	37	5	145719326	145719326	+	Silent	SNP	C	C	T			TCGA-FX-A8OO-01A-11D-A36J-09	TCGA-FX-A8OO-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3def8194-e7e6-4872-be76-50bedf6b1339	bdc4ce01-8e6f-4cfb-9850-8e48d99cc23d	5	145719326	145719326	C	T	SNP	POU4F3	ENST00000230732	human	ensembl	74_37	+1	known	silent	c.336	p.H112	1.000	NULL	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_D-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU	-	no_errors	POU4F3	HGNC	ENSG00000091010	tier1	-	-	40	0	0.00	18	21	53.85	27	0	0.00	9	1	10.00
R5-8SP6	0	genome.wustl.edu	37	Y	10037819	10037819	+	R	SNP	T	T	G			TCGA-FX-A8OO-01A-11D-A36J-09	TCGA-FX-A8OO-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3def8194-e7e6-4872-be76-50bedf6b1339	bdc4ce01-8e6f-4cfb-9850-8e48d99cc23d	Y	10037819	10037819	T	G	SNP	R5-8SP6	ENST00000515896	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	R5-8SP6	HGNC	ENSG00000251705	tier1	-	-	61	0	0.00	75	7	8.54	6	0	0.00	3	0	0.00
CXCL5	0	genome.wustl.edu	37	4	74864215	74864217	+	In_Frame_Del	DEL	CAG	CAG	-			TCGA-FX-A8OO-01A-11D-A36J-09	TCGA-FX-A8OO-10A-01D-A36M-09	CAG	CAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3def8194-e7e6-4872-be76-50bedf6b1339	bdc4ce01-8e6f-4cfb-9850-8e48d99cc23d	4	74864215	74864217	CAG	-	DEL	CXCL5	ENST00000296027	human	ensembl	74_37	-1	known	in_frame_del	c.84_82	p.L28in_frame_del	0.072:0.215:0.363	superfamily_Chemokine_IL8-like_dom	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom,prints_Chemokine_CXC	-	no_errors	CXCL5	HGNC	ENSG00000163735	tier1			34	0	0.00	19	4	17.39	4	0	0.00	1	0	0.00
ENSG00000216102	0	genome.wustl.edu	37	19	9931256	9931261	+	R	DEL	ATACAC	ATACAC	-			TCGA-FX-A8OO-01A-11D-A36J-09	TCGA-FX-A8OO-10A-01D-A36M-09	ATACAC	ATACAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3def8194-e7e6-4872-be76-50bedf6b1339	bdc4ce01-8e6f-4cfb-9850-8e48d99cc23d	19	9931256	9931261	ATACAC	-	DEL	ENSG00000216102	ENST00000401283	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.001:0.002:0.004:0.003:0.003:0.001	-	-	-	no_errors	AC008752.1	Clone_based_ensembl_gene	ENSG00000216102	tier1			0	0	0.00	0	0	0.00	0	0	0.00	0	0	0.00
EOMES	0	genome.wustl.edu	37	3	27763427	27763428	+	In_Frame_Ins	INS	-	-	CGGCGC			TCGA-FX-A8OO-01A-11D-A36J-09	TCGA-FX-A8OO-10A-01D-A36M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3def8194-e7e6-4872-be76-50bedf6b1339	bdc4ce01-8e6f-4cfb-9850-8e48d99cc23d	3	27763427	27763428	-	CGGCGC	INS	EOMES	ENST00000449599	human	ensembl	74_37	-1	known	in_frame_ins	c.359_358	p.120in_frame_insGA	0.116:0.075	NULL	pfam_TF_T-box,superfamily_p53-like_TF_D-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	EOMES	HGNC	ENSG00000163508	tier1			0	0	0.00	0	0	0.00	0	0	0.00	0	0	0.00
FOXD4L5	0	genome.wustl.edu	37	9	70177160	70177160	+	Missense_Mutation	SNP	G	G	A			TCGA-FX-A8OO-01A-11D-A36J-09	TCGA-FX-A8OO-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3def8194-e7e6-4872-be76-50bedf6b1339	bdc4ce01-8e6f-4cfb-9850-8e48d99cc23d	9	70177160	70177160	G	A	SNP	FOXD4L5	ENST00000377420	human	ensembl	74_37	-1	known	missense	c.824	p.A275V	0.999	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXD4L5	HGNC	ENSG00000204779	tier1	-	-	104	1	0.95	112	21	15.79	0	0	0.00	0	0	0.00
LINC00200	0	genome.wustl.edu	37	10	1205736	1205736	+	R	SNP	A	A	G			TCGA-FX-A8OO-01A-11D-A36J-09	TCGA-FX-A8OO-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3def8194-e7e6-4872-be76-50bedf6b1339	bdc4ce01-8e6f-4cfb-9850-8e48d99cc23d	10	1205736	1205736	A	G	SNP	LINC00200	ENST00000425630	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.155	-	-	-	no_errors	LINC00200	HGNC	ENSG00000229205	tier1	rs60415666	-	26	0	0.00	12	4	25.00	0	0	0.00	3	0	0.00
PRAMEF5	0	genome.wustl.edu	37	1	13366043	13366043	+	Missense_Mutation	SNP	T	T	C			TCGA-FX-A8OO-01A-11D-A36J-09	TCGA-FX-A8OO-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3def8194-e7e6-4872-be76-50bedf6b1339	bdc4ce01-8e6f-4cfb-9850-8e48d99cc23d	1	13366043	13366043	T	C	SNP	PRAMEF5	ENST00000376168	human	ensembl	74_37	+1	known	missense	c.487	p.Y163H	0.002	NULL	NULL	-	no_errors	PRAMEF5	HGNC	ENSG00000204502	tier1	-	-	19	0	0.00	9	3	25.00	0	0	0.00	0	0	0.00
R5-8SP6	0	genome.wustl.edu	37	Y	10037863	10037863	+	R	DEL	C	C	-			TCGA-FX-A8OO-01A-11D-A36J-09	TCGA-FX-A8OO-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3def8194-e7e6-4872-be76-50bedf6b1339	bdc4ce01-8e6f-4cfb-9850-8e48d99cc23d	Y	10037863	10037863	C	-	DEL	R5-8SP6	ENST00000515896	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	R5-8SP6	HGNC	ENSG00000251705	tier1			42	0	0.00	56	6	9.68	3	0	0.00	2	0	0.00
CYP11B1	0	genome.wustl.edu	37	8	143961100	143961100	+	Missense_Mutation	SNP	G	G	A			TCGA-FX-A8OO-01A-11D-A36J-09	TCGA-FX-A8OO-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3def8194-e7e6-4872-be76-50bedf6b1339	bdc4ce01-8e6f-4cfb-9850-8e48d99cc23d	8	143961100	143961100	G	A	SNP	CYP11B1	ENST00000292427	human	ensembl	74_37	-1	known	missense	c.130	p.R44C	0.099	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_mitochondrial	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_mitochondrial,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B,prints_Cyt_P450	-	no_errors	CYP11B1	HGNC	ENSG00000160882	tier1	-	-	41	0	0.00	22	20	47.62	3	0	0.00	1	2	66.67
MT-CO2	0	genome.wustl.edu	37	MT	8091	8091	+	Missense_Mutation	SNP	G	G	C			TCGA-FX-A8OO-01A-11D-A36J-09	TCGA-FX-A8OO-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3def8194-e7e6-4872-be76-50bedf6b1339	bdc4ce01-8e6f-4cfb-9850-8e48d99cc23d	MT	8091	8091	G	C	SNP	MT-CO2	ENST00000361739	human	ensembl	74_37	+1	known	missense	c.506	p.G169A	NULL	pfam_Cyt_c_oxidase_su2_C,superfamily_Cupredoxin,pfscan_Cyt_c_oxidase_su2_C,tigrfam_Cyt_c_oxidase_su2	pfam_Cyt_c_oxidase_su2_C,pfam_Cyt_c_oxidase_su2_TM_dom,superfamily_Cupredoxin,superfamily_Cyt_c_oxidase_su2_TM_dom,pfscan_Cyt_c_oxidase_su2_TM_dom,pfscan_Cyt_c_oxidase_su2_C,tigrfam_Cyt_c_oxidase_su2	-	no_errors	MT-CO2	HGNC	ENSG00000198712	tier1	-	-	117	0	0.00	3	83	96.51	0	0	0.00	0	3	100.00
