Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
TENM1	0	genome.wustl.edu	37	X	124097514	124097514	+	Missense_Mutation	SNP	C	C	G			TCGA-IE-A4EH-01A-11D-A24N-09	TCGA-IE-A4EH-10A-01D-A24N-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	bfcee5bd-7c24-4f45-a3a6-2aefd4849b0e	cd00cebf-c6ff-4950-9836-85300c25b19b	X	124097514	124097514	C	G	SNP	TENM1	ENST00000422452	human	ensembl	74_37	-1	known	missense	c.89	p.S30T	1.000	pfam_Ten_N	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	TENM1	HGNC	ENSG00000009694	tier1	-	-	56	0	0.00	36	30	45.45	100	0	0.00	72	43	37.39
MICU2	0	genome.wustl.edu	37	13	22067469	22067469	+	Silent	SNP	T	T	C			TCGA-IE-A4EH-01A-11D-A24N-09	TCGA-IE-A4EH-10A-01D-A24N-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	bfcee5bd-7c24-4f45-a3a6-2aefd4849b0e	cd00cebf-c6ff-4950-9836-85300c25b19b	13	22067469	22067469	T	C	SNP	MICU2	ENST00000382374	human	ensembl	74_37	-1	known	silent	c.1224	p.Q408	0.998	NULL	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	MICU2	HGNC	ENSG00000165487	tier1	-	-	116	1	0.85	68	64	48.48	146	0	0.00	119	74	37.56
BIRC8	0	genome.wustl.edu	37	19	53793609	53793609	+	Missense_Mutation	SNP	G	G	A			TCGA-IE-A4EH-01A-11D-A24N-09	TCGA-IE-A4EH-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	bfcee5bd-7c24-4f45-a3a6-2aefd4849b0e	cd00cebf-c6ff-4950-9836-85300c25b19b	19	53793609	53793609	G	A	SNP	BIRC8	ENST00000426466	human	ensembl	74_37	-1	known	missense	c.19	p.R7W	0.904	pfam_BIR,smart_BIR,pfscan_BIR	pfam_BIR,smart_BIR,smart_Znf_RING,pfscan_BIR,pfscan_Znf_RING	-	no_errors	BIRC8	HGNC	ENSG00000163098	tier1	-	-	39	0	0.00	24	11	31.43	125	0	0.00	50	54	51.92
NCK2	0	genome.wustl.edu	37	2	106471560	106471560	+	Missense_Mutation	SNP	C	C	G			TCGA-IE-A4EH-01A-11D-A24N-09	TCGA-IE-A4EH-10A-01D-A24N-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	bfcee5bd-7c24-4f45-a3a6-2aefd4849b0e	cd00cebf-c6ff-4950-9836-85300c25b19b	2	106471560	106471560	C	G	SNP	NCK2	ENST00000233154	human	ensembl	74_37	+1	known	missense	c.41	p.T14S	0.997	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pirsf_Cytoplasmic_NCK,pfscan_SH3_domain,prints_SH3_domain	pfam_SH3_domain,pfam_SH3_2,pfam_SH2,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,pirsf_Cytoplasmic_NCK,pfscan_SH2,pfscan_SH3_domain,prints_SH2,prints_SH3_domain	-	no_errors	NCK2	HGNC	ENSG00000071051	tier1	-	-	42	0	0.00	19	26	57.78	81	0	0.00	51	40	43.96
LOC100652824	0	genome.wustl.edu	37	2	202970560	202970560	+	Silent	SNP	G	G	A			TCGA-IE-A4EH-01A-11D-A24N-09	TCGA-IE-A4EH-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	bfcee5bd-7c24-4f45-a3a6-2aefd4849b0e	cd00cebf-c6ff-4950-9836-85300c25b19b	2	202970560	202970560	G	A	SNP	LOC100652824	ENST00000541917	human	ensembl	74_37	+1	known	silent	c.1401	p.A467	0.000	NULL	NULL	-	no_errors	AC079354.1	Clone_based_vega_gene	ENSG00000182329	tier1	-	-	48	0	0.00	26	31	54.39	81	0	0.00	36	31	45.59
C14orf39	0	genome.wustl.edu	37	14	60945096	60945096	+	Missense_Mutation	SNP	G	G	A			TCGA-IE-A4EH-01A-11D-A24N-09	TCGA-IE-A4EH-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	bfcee5bd-7c24-4f45-a3a6-2aefd4849b0e	cd00cebf-c6ff-4950-9836-85300c25b19b	14	60945096	60945096	G	A	SNP	C14orf39	ENST00000321731	human	ensembl	74_37	-1	known	missense	c.245	p.T82I	1.000	NULL	NULL	-	no_errors	C14orf39	HGNC	ENSG00000179008	tier1	-	-	67	0	0.00	48	27	36.00	73	0	0.00	47	39	45.35
CLCA2	0	genome.wustl.edu	37	1	86913457	86913457	+	Silent	SNP	A	A	G			TCGA-IE-A4EH-01A-11D-A24N-09	TCGA-IE-A4EH-10A-01D-A24N-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	bfcee5bd-7c24-4f45-a3a6-2aefd4849b0e	cd00cebf-c6ff-4950-9836-85300c25b19b	1	86913457	86913457	A	G	SNP	CLCA2	ENST00000370565	human	ensembl	74_37	+1	known	silent	c.1980	p.G660	0.998	pfam_DUF1973,tigrfam_CaCC_prot	pfam_Cl_channel_Ca,pfam_DUF1973,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A,tigrfam_CaCC_prot	-	no_errors	CLCA2	HGNC	ENSG00000137975	tier1	-	-	67	0	0.00	38	18	32.14	46	0	0.00	39	26	39.39
KIF4A	0	genome.wustl.edu	37	X	69550144	69550144	+	Missense_Mutation	SNP	G	G	A			TCGA-IE-A4EH-01A-11D-A24N-09	TCGA-IE-A4EH-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	bfcee5bd-7c24-4f45-a3a6-2aefd4849b0e	cd00cebf-c6ff-4950-9836-85300c25b19b	X	69550144	69550144	G	A	SNP	KIF4A	ENST00000374403	human	ensembl	74_37	+1	known	missense	c.1033	p.D345N	1.000	superfamily_P-loop_NTPase	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF4A	HGNC	ENSG00000090889	tier1	-	-	51	0	0.00	30	27	47.37	33	0	0.00	24	12	33.33
ENSG00000228302	0	genome.wustl.edu	37	10	12288380	12288380	+	R	SNP	G	G	A			TCGA-IE-A4EH-01A-11D-A24N-09	TCGA-IE-A4EH-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	bfcee5bd-7c24-4f45-a3a6-2aefd4849b0e	cd00cebf-c6ff-4950-9836-85300c25b19b	10	12288380	12288380	G	A	SNP	ENSG00000228302	ENST00000421657	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-186N15.3	Clone_based_vega_gene	ENSG00000228302	tier1	-	-	9	0	0.00	4	7	63.64	83	0	0.00	64	42	39.62
SETD5	0	genome.wustl.edu	37	3	9476152	9476152	+	Silent	SNP	C	C	T			TCGA-IE-A4EH-01A-11D-A24N-09	TCGA-IE-A4EH-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	bfcee5bd-7c24-4f45-a3a6-2aefd4849b0e	cd00cebf-c6ff-4950-9836-85300c25b19b	3	9476152	9476152	C	T	SNP	SETD5	ENST00000402198	human	ensembl	74_37	+1	known	silent	c.312	p.L104	1.000	NULL	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	-	no_errors	SETD5	HGNC	ENSG00000168137	tier1	-	-	60	0	0.00	44	55	55.56	134	0	0.00	70	74	51.39
MIR1539	0	genome.wustl.edu	37	18	47013943	47013943	+	R	SNP	A	A	C			TCGA-IE-A4EH-01A-11D-A24N-09	TCGA-IE-A4EH-10A-01D-A24N-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	bfcee5bd-7c24-4f45-a3a6-2aefd4849b0e	cd00cebf-c6ff-4950-9836-85300c25b19b	18	47013943	47013943	A	C	SNP	MIR1539	ENST00000581232	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MIR1539	HGNC	ENSG00000265496	tier1	-	-	26	0	0.00	14	7	33.33	101	0	0.00	42	23	35.38
RGAG1	0	genome.wustl.edu	37	X	109695944	109695944	+	Missense_Mutation	SNP	A	A	T			TCGA-IE-A4EH-01A-11D-A24N-09	TCGA-IE-A4EH-10A-01D-A24N-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	bfcee5bd-7c24-4f45-a3a6-2aefd4849b0e	cd00cebf-c6ff-4950-9836-85300c25b19b	X	109695944	109695944	A	T	SNP	RGAG1	ENST00000465301	human	ensembl	74_37	+1	known	missense	c.2099	p.Q700L	0.003	NULL	NULL	-	no_errors	RGAG1	HGNC	ENSG00000243978	tier1	-	-	54	0	0.00	29	24	45.28	96	0	0.00	62	40	39.22
TCEB3B	0	genome.wustl.edu	37	18	44559800	44559800	+	Silent	SNP	C	C	T			TCGA-IE-A4EH-01A-11D-A24N-09	TCGA-IE-A4EH-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	bfcee5bd-7c24-4f45-a3a6-2aefd4849b0e	cd00cebf-c6ff-4950-9836-85300c25b19b	18	44559800	44559800	C	T	SNP	TCEB3B	ENST00000332567	human	ensembl	74_37	-1	known	silent	c.1836	p.P612	0.993	pfam_R_pol_II_trans_fac_SIII_A	pfam_R_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub	-	no_errors	TCEB3B	HGNC	ENSG00000206181	tier1	-	-	66	0	0.00	40	24	37.50	75	0	0.00	57	41	41.84
FAM26D	0	genome.wustl.edu	37	6	116875489	116875489	+	Missense_Mutation	SNP	C	C	A			TCGA-IE-A4EH-01A-11D-A24N-09	TCGA-IE-A4EH-10A-01D-A24N-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	bfcee5bd-7c24-4f45-a3a6-2aefd4849b0e	cd00cebf-c6ff-4950-9836-85300c25b19b	6	116875489	116875489	C	A	SNP	FAM26D	ENST00000368596	human	ensembl	74_37	+1	known	missense	c.533	p.A178D	0.771	NULL	NULL	-	no_errors	FAM26D	HGNC	ENSG00000164451	tier1	-	-	30	0	0.00	14	16	53.33	59	0	0.00	39	36	48.00
TENM1	0	genome.wustl.edu	37	X	124097497	124097497	+	Missense_Mutation	SNP	G	G	C			TCGA-IE-A4EH-01A-11D-A24N-09	TCGA-IE-A4EH-10A-01D-A24N-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	bfcee5bd-7c24-4f45-a3a6-2aefd4849b0e	cd00cebf-c6ff-4950-9836-85300c25b19b	X	124097497	124097497	G	C	SNP	TENM1	ENST00000422452	human	ensembl	74_37	-1	known	missense	c.106	p.P36A	1.000	pfam_Ten_N	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	TENM1	HGNC	ENSG00000009694	tier1	-	-	53	0	0.00	35	30	45.45	101	0	0.00	73	43	37.07
ZNF726	0	genome.wustl.edu	37	19	24102852	24102852	+	Missense_Mutation	SNP	T	T	C			TCGA-IE-A4EH-01A-11D-A24N-09	TCGA-IE-A4EH-10A-01D-A24N-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	bfcee5bd-7c24-4f45-a3a6-2aefd4849b0e	cd00cebf-c6ff-4950-9836-85300c25b19b	19	24102852	24102852	T	C	SNP	ZNF726	ENST00000322487	human	ensembl	74_37	+1	known	missense	c.194	p.M65T	0.000	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF726	HGNC	ENSG00000213967	tier1	-	-	86	0	0.00	58	29	33.33	30	0	0.00	25	22	46.81
PODXL	0	genome.wustl.edu	37	7	131190689	131190689	+	Silent	SNP	G	G	A			TCGA-IE-A4EH-01A-11D-A24N-09	TCGA-IE-A4EH-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	bfcee5bd-7c24-4f45-a3a6-2aefd4849b0e	cd00cebf-c6ff-4950-9836-85300c25b19b	7	131190689	131190689	G	A	SNP	PODXL	ENST00000541194	human	ensembl	74_37	-1	known	silent	c.1423	p.L475	1.000	pfam_CD34/Podocalyxin,pirsf_Podocalyxin-like_p1	pfam_CD34/Podocalyxin,pirsf_Podocalyxin-like_p1	-	no_errors	PODXL	HGNC	ENSG00000128567	tier1	-	-	74	0	0.00	51	6	10.53	26	0	0.00	18	3	13.64
WDR87	0	genome.wustl.edu	37	19	38378740	38378740	+	Silent	SNP	T	T	C			TCGA-IE-A4EH-01A-11D-A24N-09	TCGA-IE-A4EH-10A-01D-A24N-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	bfcee5bd-7c24-4f45-a3a6-2aefd4849b0e	cd00cebf-c6ff-4950-9836-85300c25b19b	19	38378740	38378740	T	C	SNP	WDR87	ENST00000447313	human	ensembl	74_37	-1	known	silent	c.5571	p.R1857	0.000	superfamily_ARM-type_fold	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,superfamily_Quinolinate_PRibosylTrfase_C,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR87	HGNC	ENSG00000171804	tier1	-	-	116	0	0.00	13	45	77.59	149	1	0.67	12	67	84.81
RAD54L2	0	genome.wustl.edu	37	3	51669630	51669630	+	Missense_Mutation	SNP	A	A	C			TCGA-IE-A4EH-01A-11D-A24N-09	TCGA-IE-A4EH-10A-01D-A24N-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	bfcee5bd-7c24-4f45-a3a6-2aefd4849b0e	cd00cebf-c6ff-4950-9836-85300c25b19b	3	51669630	51669630	A	C	SNP	RAD54L2	ENST00000409535	human	ensembl	74_37	+1	known	missense	c.1164	p.K388N	1.000	pfam_SNF2_N,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	RAD54L2	HGNC	ENSG00000164080	tier1	-	-	36	0	0.00	28	22	44.00	91	1	1.09	27	22	44.90
LRP2	0	genome.wustl.edu	37	2	169999283	169999283	+	Missense_Mutation	SNP	T	T	C			TCGA-IE-A4EH-01A-11D-A24N-09	TCGA-IE-A4EH-10A-01D-A24N-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	bfcee5bd-7c24-4f45-a3a6-2aefd4849b0e	cd00cebf-c6ff-4950-9836-85300c25b19b	2	169999283	169999283	T	C	SNP	LRP2	ENST00000263816	human	ensembl	74_37	-1	known	missense	c.13009	p.I4337V	0.636	superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479	tier1	-	-	66	0	0.00	45	25	35.71	74	0	0.00	43	41	48.81
KIF9	0	genome.wustl.edu	37	3	47287688	47287688	+	Missense_Mutation	SNP	T	T	A			TCGA-IE-A4EH-01A-11D-A24N-09	TCGA-IE-A4EH-10A-01D-A24N-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	bfcee5bd-7c24-4f45-a3a6-2aefd4849b0e	cd00cebf-c6ff-4950-9836-85300c25b19b	3	47287688	47287688	T	A	SNP	KIF9	ENST00000265529	human	ensembl	74_37	-1	known	missense	c.1288	p.S430C	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF9	HGNC	ENSG00000088727	tier1	-	-	74	0	0.00	31	36	53.73	96	0	0.00	50	46	47.92
APC1	0	genome.wustl.edu	37	2	112536331	112536331	+	Missense_Mutation	SNP	T	T	A			TCGA-IE-A4EH-01A-11D-A24N-09	TCGA-IE-A4EH-10A-01D-A24N-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	bfcee5bd-7c24-4f45-a3a6-2aefd4849b0e	cd00cebf-c6ff-4950-9836-85300c25b19b	2	112536331	112536331	T	A	SNP	APC1	ENST00000341068	human	ensembl	74_37	-1	known	missense	c.5306	p.D1769V	1.000	NULL	NULL	-	no_errors	APC1	HGNC	ENSG00000153107	tier1	-	-	159	0	0.00	78	60	43.48	34	0	0.00	29	22	43.14
SCML2	0	genome.wustl.edu	37	X	18257646	18257646	+	R	SNP	T	T	A			TCGA-IE-A4EH-01A-11D-A24N-09	TCGA-IE-A4EH-10A-01D-A24N-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	bfcee5bd-7c24-4f45-a3a6-2aefd4849b0e	cd00cebf-c6ff-4950-9836-85300c25b19b	X	18257646	18257646	T	A	SNP	SCML2	ENST00000491988	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SCML2	HGNC	ENSG00000102098	tier1	-	-	106	0	0.00	66	52	44.07	86	0	0.00	65	62	48.82
COL6A6	0	genome.wustl.edu	37	3	130293060	130293060	+	Missense_Mutation	SNP	G	G	A			TCGA-IE-A4EH-01A-11D-A24N-09	TCGA-IE-A4EH-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	bfcee5bd-7c24-4f45-a3a6-2aefd4849b0e	cd00cebf-c6ff-4950-9836-85300c25b19b	3	130293060	130293060	G	A	SNP	COL6A6	ENST00000358511	human	ensembl	74_37	+1	known	missense	c.3238	p.G1080S	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A6	HGNC	ENSG00000206384	tier1	-	-	16	0	0.00	8	8	50.00	90	0	0.00	70	51	42.15
DRD1	0	genome.wustl.edu	37	5	174869993	174869993	+	Missense_Mutation	SNP	G	G	A			TCGA-IE-A4EH-01A-11D-A24N-09	TCGA-IE-A4EH-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	bfcee5bd-7c24-4f45-a3a6-2aefd4849b0e	cd00cebf-c6ff-4950-9836-85300c25b19b	5	174869993	174869993	G	A	SNP	DRD1	ENST00000393752	human	ensembl	74_37	-1	known	missense	c.110	p.T37M	1.000	pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Dopamine_D1_rcpt,prints_GPCR_Rhodpsn,prints_Dopamine_rcpt,prints_ADR_fam	-	no_errors	DRD1	HGNC	ENSG00000184845	tier1	-	-	36	0	0.00	0	19	100.00	53	0	0.00	5	41	89.13
EPN2	0	genome.wustl.edu	37	17	19189049	19189049	+	Missense_Mutation	SNP	C	C	T			TCGA-IE-A4EH-01A-11D-A24N-09	TCGA-IE-A4EH-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	bfcee5bd-7c24-4f45-a3a6-2aefd4849b0e	cd00cebf-c6ff-4950-9836-85300c25b19b	17	19189049	19189049	C	T	SNP	EPN2	ENST00000314728	human	ensembl	74_37	+1	known	missense	c.712	p.R238C	0.999	NULL	pfam_Epsin_dom_N,pfam_ANTH_dom,superfamily_ENTH_VHS,smart_Epsin-like_N,smart_Ubiquitin-int_motif,pfscan_Epsin-like_N,pfscan_Ubiquitin-int_motif	-	no_errors	EPN2	HGNC	ENSG00000072134	tier1	-	-	42	0	0.00	62	20	24.39	5	0	0.00	3	3	50.00
MIR550A3	0	genome.wustl.edu	37	7	29720400	29720400	+	R	SNP	C	C	G			TCGA-IE-A4EH-01A-11D-A24N-09	TCGA-IE-A4EH-10A-01D-A24N-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	bfcee5bd-7c24-4f45-a3a6-2aefd4849b0e	cd00cebf-c6ff-4950-9836-85300c25b19b	7	29720400	29720400	C	G	SNP	MIR550A3	ENST00000390735	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.225	-	-	-	no_errors	MIR550A3	HGNC	ENSG00000212024	tier1	-	-	66	0	0.00	25	48	65.75	7	0	0.00	2	2	50.00
TP53	0	genome.wustl.edu	37	17	7577580	7577580	+	Missense_Mutation	SNP	T	T	C			TCGA-IE-A4EH-01A-11D-A24N-09	TCGA-IE-A4EH-10A-01D-A24N-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	bfcee5bd-7c24-4f45-a3a6-2aefd4849b0e	cd00cebf-c6ff-4950-9836-85300c25b19b	17	7577580	7577580	T	C	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.701	p.Y234C	1.000	pfam_p53_D-bd,superfamily_p53-like_TF_D-bd,prints_p53_tumour_suppressor	pfam_p53_D-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_D-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	-	-	70	0	0.00	3	54	94.74	59	0	0.00	3	27	90.00
PSMB11	0	genome.wustl.edu	37	14	23512330	23512330	+	Missense_Mutation	SNP	C	C	T			TCGA-IE-A4EH-01A-11D-A24N-09	TCGA-IE-A4EH-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	bfcee5bd-7c24-4f45-a3a6-2aefd4849b0e	cd00cebf-c6ff-4950-9836-85300c25b19b	14	23512330	23512330	C	T	SNP	PSMB11	ENST00000408907	human	ensembl	74_37	+1	known	missense	c.896	p.T299M	0.001	NULL	pfam_Proteasome_sua/b,prints_Pept_T1A_subB	-	no_errors	PSMB11	HGNC	ENSG00000222028	tier1	-	-	45	0	0.00	40	8	16.67	69	0	0.00	59	4	6.35
ENSG00000216191	0	genome.wustl.edu	37	2	50923314	50923321	+	R	DEL	GTGTGTGT	GTGTGTGT	-			TCGA-IE-A4EH-01A-11D-A24N-09	TCGA-IE-A4EH-10A-01D-A24N-09	GTGTGTGT	GTGTGTGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bfcee5bd-7c24-4f45-a3a6-2aefd4849b0e	cd00cebf-c6ff-4950-9836-85300c25b19b	2	50923314	50923321	GTGTGTGT	-	DEL	ENSG00000216191	ENST00000401372	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.006:0.004:0.003:0.002:0.002:0.000:0.000:0.000	-	-	-	no_errors	AC009234.2	Clone_based_ensembl_gene	ENSG00000216191	tier1			0	0	0.00	0	0	0.00	0	0	0.00	0	0	0.00
MT-CO1	0	genome.wustl.edu	37	MT	7218	7218	+	Missense_Mutation	SNP	C	C	A			TCGA-IE-A4EH-01A-11D-A24N-09	TCGA-IE-A4EH-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bfcee5bd-7c24-4f45-a3a6-2aefd4849b0e	cd00cebf-c6ff-4950-9836-85300c25b19b	MT	7218	7218	C	A	SNP	MT-CO1	ENST00000361624	human	ensembl	74_37	+1	known	missense	c.1315	p.R439S	NULL	pfam_Cyt_c_Oxase_su1,superfamily_Cyt_c_Oxase_su1_dom,pfscan_Cyt_c_Oxase_su1_dom,prints_Cyt_c_Oxase_su1	pfam_Cyt_c_Oxase_su1,superfamily_Cyt_c_Oxase_su1_dom,pfscan_Cyt_c_Oxase_su1_dom,prints_Cyt_c_Oxase_su1	-	no_errors	MT-CO1	HGNC	ENSG00000198804	tier1	-	-	36	0	0.00	9	2	18.18	3	0	0.00	0	0	0.00
MT-TS2	0	genome.wustl.edu	37	MT	12213	12213	+	R	SNP	G	G	T			TCGA-IE-A4EH-01A-11D-A24N-09	TCGA-IE-A4EH-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bfcee5bd-7c24-4f45-a3a6-2aefd4849b0e	cd00cebf-c6ff-4950-9836-85300c25b19b	MT	12213	12213	G	T	SNP	MT-TS2	ENST00000387449	human	ensembl	74_37	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors	MT-TS2	HGNC	ENSG00000210184	tier1	-	-	19	0	0.00	6	2	25.00	1	0	0.00	0	0	0.00
LATS2	0	genome.wustl.edu	37	13	21563188	21563188	+	Missense_Mutation	SNP	G	G	A			TCGA-IE-A4EH-01A-11D-A24N-09	TCGA-IE-A4EH-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bfcee5bd-7c24-4f45-a3a6-2aefd4849b0e	cd00cebf-c6ff-4950-9836-85300c25b19b	13	21563188	21563188	G	A	SNP	LATS2	ENST00000382592	human	ensembl	74_37	-1	known	missense	c.731	p.A244V	0.008	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	LATS2	HGNC	ENSG00000150457	tier1	-	-	18	0	0.00	31	15	31.91	2	0	0.00	2	4	66.67
FANCG	0	genome.wustl.edu	37	9	35078228	35078228	+	Silent	SNP	G	G	A			TCGA-IE-A4EH-01A-11D-A24N-09	TCGA-IE-A4EH-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bfcee5bd-7c24-4f45-a3a6-2aefd4849b0e	cd00cebf-c6ff-4950-9836-85300c25b19b	9	35078228	35078228	G	A	SNP	FANCG	ENST00000378643	human	ensembl	74_37	-1	known	silent	c.420	p.H140	0.952	superfamily_Sig_transdc_His_kin_Hpt_dom	superfamily_Sig_transdc_His_kin_Hpt_dom,smart_TPR_repeat	-	no_errors	FANCG	HGNC	ENSG00000221829	tier1	-	-	28	0	0.00	17	5	22.73	29	0	0.00	26	2	7.14
SGIP1	0	genome.wustl.edu	37	1	67142719	67142719	+	Missense_Mutation	SNP	G	G	T			TCGA-IE-A4EH-01A-11D-A24N-09	TCGA-IE-A4EH-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bfcee5bd-7c24-4f45-a3a6-2aefd4849b0e	cd00cebf-c6ff-4950-9836-85300c25b19b	1	67142719	67142719	G	T	SNP	SGIP1	ENST00000237247	human	ensembl	74_37	+1	known	missense	c.691	p.G231C	1.000	NULL	pfam_Muniscin_C-term_mu_dom,pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C	-	no_errors	SGIP1	HGNC	ENSG00000118473	tier1	-	-	28	0	0.00	42	4	8.70	100	0	0.00	103	2	1.90
FBXO30	0	genome.wustl.edu	37	6	146126375	146126375	+	Missense_Mutation	SNP	G	G	T			TCGA-IE-A4EH-01A-11D-A24N-09	TCGA-IE-A4EH-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bfcee5bd-7c24-4f45-a3a6-2aefd4849b0e	cd00cebf-c6ff-4950-9836-85300c25b19b	6	146126375	146126375	G	T	SNP	FBXO30	ENST00000237281	human	ensembl	74_37	-1	known	missense	c.1167	p.F389L	0.999	NULL	pfam_F-box_dom,superfamily_F-box_dom,superfamily_TRAF-like,pfscan_F-box_dom,pfscan_Znf_TRAF	-	no_errors	FBXO30	HGNC	ENSG00000118496	tier1	-	-	67	0	0.00	44	4	8.33	83	0	0.00	117	2	1.68
