Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
USP13	0	genome.wustl.edu	37	3	179499580	179499580	+	Missense_Mutation	SNP	C	C	T			TCGA-IW-A3M4-01A-11D-A21Q-09	TCGA-IW-A3M4-10B-01D-A21Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6aa00162-6294-4ce7-b6b7-0c3452e24cd6	8475f0ef-158e-493e-82b5-44e895dfc0a7	3	179499580	179499580	C	T	SNP	USP13	ENST00000263966	human	ensembl	74_37	+1	known	missense	c.2467	p.H823Y	1.000	pfam_Peptidase_C19/C67,pirsf_Ubiquitinyl_hydrolase,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_UBA/Ts_N,pfam_Znf_UBP,superfamily_UBA-like,smart_Znf_UBP,smart_UBA/transl_elong_EF1B_N_euk,pirsf_Ubiquitinyl_hydrolase,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP13	HGNC	ENSG00000058056	tier1	-	-	61	0	0.00	43	26	37.68	119	0	0.00	88	52	37.14
PATZ1	0	genome.wustl.edu	37	22	31740715	31740715	+	Missense_Mutation	SNP	G	G	T			TCGA-IW-A3M4-01A-11D-A21Q-09	TCGA-IW-A3M4-10B-01D-A21Q-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6aa00162-6294-4ce7-b6b7-0c3452e24cd6	8475f0ef-158e-493e-82b5-44e895dfc0a7	22	31740715	31740715	G	T	SNP	PATZ1	ENST00000266269	human	ensembl	74_37	-1	known	missense	c.874	p.L292I	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	PATZ1	HGNC	ENSG00000100105	tier1	-	-	39	0	0.00	22	13	37.14	87	0	0.00	65	38	36.89
FRY	0	genome.wustl.edu	37	13	32802785	32802785	+	Missense_Mutation	SNP	C	C	A			TCGA-IW-A3M4-01A-11D-A21Q-09	TCGA-IW-A3M4-10B-01D-A21Q-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6aa00162-6294-4ce7-b6b7-0c3452e24cd6	8475f0ef-158e-493e-82b5-44e895dfc0a7	13	32802785	32802785	C	A	SNP	FRY	ENST00000380250	human	ensembl	74_37	+1	known	missense	c.5399	p.T1800K	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	FRY	HGNC	ENSG00000073910	tier1	-	-	77	0	0.00	5	30	85.71	107	0	0.00	14	57	80.28
TRAF3IP3	0	genome.wustl.edu	37	1	209955540	209955540	+	R	SNP	C	C	T			TCGA-IW-A3M4-01A-11D-A21Q-09	TCGA-IW-A3M4-10B-01D-A21Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6aa00162-6294-4ce7-b6b7-0c3452e24cd6	8475f0ef-158e-493e-82b5-44e895dfc0a7	1	209955540	209955540	C	T	SNP	TRAF3IP3	ENST00000480569	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	TRAF3IP3	HGNC	ENSG00000009790	tier1	-	-	22	0	0.00	14	18	56.25	170	1	0.58	80	50	38.46
ACE2	0	genome.wustl.edu	37	X	15579864	15579864	+	R	SNP	G	G	T			TCGA-IW-A3M4-01A-11D-A21Q-09	TCGA-IW-A3M4-10B-01D-A21Q-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6aa00162-6294-4ce7-b6b7-0c3452e24cd6	8475f0ef-158e-493e-82b5-44e895dfc0a7	X	15579864	15579864	G	T	SNP	ACE2	ENST00000471548	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ACE2	HGNC	ENSG00000130234	tier1	-	-	36	0	0.00	27	19	41.30	101	0	0.00	57	64	52.89
ENSG00000272356	0	genome.wustl.edu	37	6	111630922	111630922	+	R	SNP	T	T	C			TCGA-IW-A3M4-01A-11D-A21Q-09	TCGA-IW-A3M4-10B-01D-A21Q-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6aa00162-6294-4ce7-b6b7-0c3452e24cd6	8475f0ef-158e-493e-82b5-44e895dfc0a7	6	111630922	111630922	T	C	SNP	ENSG00000272356	ENST00000607434	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	RP5-1112D6.8	Clone_based_vega_gene	ENSG00000272356	tier1	-	-	28	0	0.00	12	13	52.00	46	0	0.00	29	24	45.28
SLC24A4	0	genome.wustl.edu	37	14	92959954	92959954	+	Missense_Mutation	SNP	G	G	T			TCGA-IW-A3M4-01A-11D-A21Q-09	TCGA-IW-A3M4-10B-01D-A21Q-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6aa00162-6294-4ce7-b6b7-0c3452e24cd6	8475f0ef-158e-493e-82b5-44e895dfc0a7	14	92959954	92959954	G	T	SNP	SLC24A4	ENST00000532405	human	ensembl	74_37	+1	known	missense	c.1851	p.M617I	1.000	NULL	pfam_NaCa_Exmemb,tigrfam_K/Na/Ca-exchanger	-	no_errors	SLC24A4	HGNC	ENSG00000140090	tier1	-	-	151	0	0.00	12	66	84.62	52	0	0.00	10	16	61.54
IRS4	0	genome.wustl.edu	37	X	107975899	107975899	+	Missense_Mutation	SNP	G	G	A			TCGA-IW-A3M4-01A-11D-A21Q-09	TCGA-IW-A3M4-10B-01D-A21Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6aa00162-6294-4ce7-b6b7-0c3452e24cd6	8475f0ef-158e-493e-82b5-44e895dfc0a7	X	107975899	107975899	G	A	SNP	IRS4	ENST00000372129	human	ensembl	74_37	-1	known	missense	c.3676	p.P1226S	0.702	NULL	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1,prints_Insln_rcpt_S1	-	no_errors	IRS4	HGNC	ENSG00000133124	tier1	-	-	72	0	0.00	43	46	51.11	82	0	0.00	44	23	34.33
MUC17	0	genome.wustl.edu	37	7	100687050	100687050	+	Missense_Mutation	SNP	C	C	A			TCGA-IW-A3M4-01A-11D-A21Q-09	TCGA-IW-A3M4-10B-01D-A21Q-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6aa00162-6294-4ce7-b6b7-0c3452e24cd6	8475f0ef-158e-493e-82b5-44e895dfc0a7	7	100687050	100687050	C	A	SNP	MUC17	ENST00000306151	human	ensembl	74_37	+1	known	missense	c.12353	p.T4118K	0.001	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	MUC17	HGNC	ENSG00000169876	tier1	rs200507888	GMAF=0.0005	35	0	0.00	10	14	58.33	98	0	0.00	47	61	56.48
DH14	0	genome.wustl.edu	37	1	225534313	225534313	+	Missense_Mutation	SNP	A	A	G			TCGA-IW-A3M4-01A-11D-A21Q-09	TCGA-IW-A3M4-10B-01D-A21Q-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6aa00162-6294-4ce7-b6b7-0c3452e24cd6	8475f0ef-158e-493e-82b5-44e895dfc0a7	1	225534313	225534313	A	G	SNP	DH14	ENST00000430092	human	ensembl	74_37	+1	known	missense	c.10974	p.I3658M	0.002	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase,superfamily_Tautomerase/MIF_sf,smart_AAA+_ATPase	-	no_errors	DH14	HGNC	ENSG00000185842	tier1	-	-	24	0	0.00	12	12	50.00	99	0	0.00	49	51	51.00
LYST	0	genome.wustl.edu	37	1	235950617	235950617	+	Nonsense_Mutation	SNP	G	G	T			TCGA-IW-A3M4-01A-11D-A21Q-09	TCGA-IW-A3M4-10B-01D-A21Q-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6aa00162-6294-4ce7-b6b7-0c3452e24cd6	8475f0ef-158e-493e-82b5-44e895dfc0a7	1	235950617	235950617	G	T	SNP	LYST	ENST00000389793	human	ensembl	74_37	-1	known	nonsense	c.4745	p.S1582*	1.000	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669	tier1	-	-	100	1	0.99	46	38	45.24	92	0	0.00	53	41	43.62
CYP2C19	0	genome.wustl.edu	37	10	96534925	96534925	+	Missense_Mutation	SNP	G	G	T			TCGA-IW-A3M4-01A-11D-A21Q-09	TCGA-IW-A3M4-10B-01D-A21Q-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6aa00162-6294-4ce7-b6b7-0c3452e24cd6	8475f0ef-158e-493e-82b5-44e895dfc0a7	10	96534925	96534925	G	T	SNP	CYP2C19	ENST00000371321	human	ensembl	74_37	+1	known	missense	c.279	p.E93D	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2C19	HGNC	ENSG00000165841	tier1	-	-	230	0	0.00	118	113	48.92	97	0	0.00	62	46	42.59
LCP2	0	genome.wustl.edu	37	5	169685121	169685121	+	Silent	SNP	G	G	A			TCGA-IW-A3M4-01A-11D-A21Q-09	TCGA-IW-A3M4-10B-01D-A21Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6aa00162-6294-4ce7-b6b7-0c3452e24cd6	8475f0ef-158e-493e-82b5-44e895dfc0a7	5	169685121	169685121	G	A	SNP	LCP2	ENST00000046794	human	ensembl	74_37	-1	known	silent	c.1020	p.N340	1.000	NULL	pfam_SH2,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,smart_SH2,pfscan_SH2	-	no_errors	LCP2	HGNC	ENSG00000043462	tier1	-	-	30	0	0.00	17	11	39.29	128	0	0.00	87	44	33.59
SPINK13	0	genome.wustl.edu	37	5	147653942	147653942	+	Missense_Mutation	SNP	C	C	T			TCGA-IW-A3M4-01A-11D-A21Q-09	TCGA-IW-A3M4-10B-01D-A21Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6aa00162-6294-4ce7-b6b7-0c3452e24cd6	8475f0ef-158e-493e-82b5-44e895dfc0a7	5	147653942	147653942	C	T	SNP	SPINK13	ENST00000398450	human	ensembl	74_37	+1	known	missense	c.103	p.P35S	0.376	NULL	pfam_Kazal_dom,smart_Kazal_dom	-	no_errors	SPINK13	HGNC	ENSG00000214510	tier1	-	-	47	0	0.00	21	19	47.50	91	0	0.00	61	19	23.75
ZNF514	0	genome.wustl.edu	37	2	95815475	95815475	+	Missense_Mutation	SNP	C	C	G			TCGA-IW-A3M4-01A-11D-A21Q-09	TCGA-IW-A3M4-10B-01D-A21Q-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6aa00162-6294-4ce7-b6b7-0c3452e24cd6	8475f0ef-158e-493e-82b5-44e895dfc0a7	2	95815475	95815475	C	G	SNP	ZNF514	ENST00000295208	human	ensembl	74_37	-1	known	missense	c.755	p.R252T	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF514	HGNC	ENSG00000144026	tier1	-	-	85	0	0.00	52	58	52.73	64	0	0.00	40	41	50.62
SAPCD1-AS1	0	genome.wustl.edu	37	6	31732142	31732142	+	R	SNP	A	A	T			TCGA-IW-A3M4-01A-11D-A21Q-09	TCGA-IW-A3M4-10B-01D-A21Q-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6aa00162-6294-4ce7-b6b7-0c3452e24cd6	8475f0ef-158e-493e-82b5-44e895dfc0a7	6	31732142	31732142	A	T	SNP	SAPCD1-AS1	ENST00000419679	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SAPCD1-AS1	HGNC	ENSG00000235663	tier1	-	-	38	0	0.00	24	16	40.00	79	0	0.00	39	46	54.12
KANSL1	0	genome.wustl.edu	37	17	44144914	44144914	+	Splice_Site	SNP	C	C	A			TCGA-IW-A3M4-01A-11D-A21Q-09	TCGA-IW-A3M4-10B-01D-A21Q-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6aa00162-6294-4ce7-b6b7-0c3452e24cd6	8475f0ef-158e-493e-82b5-44e895dfc0a7	17	44144914	44144914	C	A	SNP	KANSL1	ENST00000262419	human	ensembl	74_37	-1	known	splice_site	c.1652+1	e4+1	1.000	-	-	-	no_errors	KANSL1	HGNC	ENSG00000120071	tier1	-	-	32	0	0.00	57	16	21.92	115	0	0.00	129	44	25.43
PTPRT	0	genome.wustl.edu	37	20	40979337	40979337	+	Frame_Shift_Del	DEL	G	G	-			TCGA-IW-A3M4-01A-11D-A21Q-09	TCGA-IW-A3M4-10B-01D-A21Q-09	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6aa00162-6294-4ce7-b6b7-0c3452e24cd6	8475f0ef-158e-493e-82b5-44e895dfc0a7	20	40979337	40979337	G	-	DEL	PTPRT	ENST00000373198	human	ensembl	74_37	-1	known	frame_shift_del	c.1796	p.P599fs	0.994	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRT	HGNC	ENSG00000196090	tier1			98	0	0.00	51	42	45.16	38	0	0.00	21	15	41.67
MORC3	0	genome.wustl.edu	37	21	37709262	37709272	+	Frame_Shift_Del	DEL	ATGGGAATGGT	ATGGGAATGGT	-			TCGA-IW-A3M4-01A-11D-A21Q-09	TCGA-IW-A3M4-10B-01D-A21Q-09	ATGGGAATGGT	ATGGGAATGGT	ATGGGAATGGT	-	ATGGGAATGGT	ATGGGAATGGT	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6aa00162-6294-4ce7-b6b7-0c3452e24cd6	8475f0ef-158e-493e-82b5-44e895dfc0a7	21	37709262	37709272	ATGGGAATGGT	-	DEL	MORC3	ENST00000400485	human	ensembl	74_37	+1	known	frame_shift_del	c.203_213	p.G69fs	1.000:0.999:1.000:1.000:0.996:1.000:1.000:0.967:1.000:1.000:0.229	pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd	pfam_Znf_CW,pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,pfscan_Znf_CW	-	no_errors	MORC3	HGNC	ENSG00000159256	tier1			82	0	0.00	87	15	14.71	82	0	0.00	87	15	14.71
TCEB3	0	genome.wustl.edu	37	1	24078180	24078181	+	Frame_Shift_Ins	INS	-	-	G			TCGA-IW-A3M4-01A-11D-A21Q-09	TCGA-IW-A3M4-10B-01D-A21Q-09	-	-	-	G	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6aa00162-6294-4ce7-b6b7-0c3452e24cd6	8475f0ef-158e-493e-82b5-44e895dfc0a7	1	24078180	24078181	-	G	INS	TCEB3	ENST00000418390	human	ensembl	74_37	+1	known	frame_shift_ins	c.1163_1164	p.E389fs	0.995:0.995	NULL	pfam_R_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,pfscan_F-box_dom	-	no_errors	TCEB3	HGNC	ENSG00000011007	tier1			19	0	0.00	3	8	72.73	183	0	0.00	12	86	87.76
OPLAH	0	genome.wustl.edu	37	8	145111873	145111873	+	Silent	SNP	G	G	A			TCGA-IW-A3M4-01A-11D-A21Q-09	TCGA-IW-A3M4-10B-01D-A21Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6aa00162-6294-4ce7-b6b7-0c3452e24cd6	8475f0ef-158e-493e-82b5-44e895dfc0a7	8	145111873	145111873	G	A	SNP	OPLAH	ENST00000426825	human	ensembl	74_37	-1	known	silent	c.1684	p.L562	0.975	NULL	pfam_Hydantoinase_B,pfam_Hydantoinase_A,pfam_Hydant_A_N	-	no_errors	OPLAH	HGNC	ENSG00000178814	tier1	-	-	11	0	0.00	14	9	39.13	15	0	0.00	7	5	41.67
VPS13A	0	genome.wustl.edu	37	9	79824413	79824413	+	Missense_Mutation	SNP	A	A	G			TCGA-IW-A3M4-01A-11D-A21Q-09	TCGA-IW-A3M4-10B-01D-A21Q-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6aa00162-6294-4ce7-b6b7-0c3452e24cd6	8475f0ef-158e-493e-82b5-44e895dfc0a7	9	79824413	79824413	A	G	SNP	VPS13A	ENST00000360280	human	ensembl	74_37	+1	known	missense	c.460	p.K154E	1.000	NULL	pfam_VPSAP_dom,pfam_Autophagy-rel_C	-	no_errors	VPS13A	HGNC	ENSG00000197969	tier1	-	-	86	0	0.00	59	9	13.24	91	0	0.00	102	8	7.27
FBXO48	0	genome.wustl.edu	37	2	68691360	68691360	+	Missense_Mutation	SNP	T	T	A			TCGA-IW-A3M4-01A-11D-A21Q-09	TCGA-IW-A3M4-10B-01D-A21Q-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6aa00162-6294-4ce7-b6b7-0c3452e24cd6	8475f0ef-158e-493e-82b5-44e895dfc0a7	2	68691360	68691360	T	A	SNP	FBXO48	ENST00000377957	human	ensembl	74_37	-1	known	missense	c.449	p.E150V	1.000	NULL	pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXO48	HGNC	ENSG00000204923	tier1	-	-	85	0	0.00	80	7	8.05	98	0	0.00	122	9	6.87
KRT80	0	genome.wustl.edu	37	12	52566026	52566026	+	Silent	SNP	G	G	T			TCGA-IW-A3M4-01A-11D-A21Q-09	TCGA-IW-A3M4-10B-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6aa00162-6294-4ce7-b6b7-0c3452e24cd6	8475f0ef-158e-493e-82b5-44e895dfc0a7	12	52566026	52566026	G	T	SNP	KRT80	ENST00000394815	human	ensembl	74_37	-1	known	silent	c.1134	p.I378	0.801	pfam_IF	pfam_IF,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT80	HGNC	ENSG00000167767	tier1	-	-	125	0	0.00	89	56	38.62	7	0	0.00	4	1	20.00
ENSG00000215941	0	genome.wustl.edu	37	3	38948847	38948854	+	R	DEL	ATACACAC	ATACACAC	-			TCGA-IW-A3M4-01A-11D-A21Q-09	TCGA-IW-A3M4-10B-01D-A21Q-09	ATACACAC	ATACACAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6aa00162-6294-4ce7-b6b7-0c3452e24cd6	8475f0ef-158e-493e-82b5-44e895dfc0a7	3	38948847	38948854	ATACACAC	-	DEL	ENSG00000215941	ENST00000401122	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.001:0.000:0.000:0.000:0.000:0.000:0.000:0.000	-	-	-	no_errors	AC116038.1	Clone_based_ensembl_gene	ENSG00000215941	tier1			0	0	0.00	0	0	0.00	0	0	0.00	0	0	0.00
FAM230C	0	genome.wustl.edu	37	22	21663321	21663322	+	R	INS	-	-	AGCGA			TCGA-IW-A3M4-01A-11D-A21Q-09	TCGA-IW-A3M4-10B-01D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6aa00162-6294-4ce7-b6b7-0c3452e24cd6	8475f0ef-158e-493e-82b5-44e895dfc0a7	22	21663321	21663322	-	AGCGA	INS	FAM230C	ENST00000436681	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	KB-1183D5.13	Clone_based_vega_gene	ENSG00000206142	tier1			4	0	0.00	1	0	0.00	4	0	0.00	1	0	0.00
LOC100128374	0	genome.wustl.edu	37	7	1888754	1888759	+	R	DEL	ACACAG	ACACAG	-			TCGA-IW-A3M4-01A-11D-A21Q-09	TCGA-IW-A3M4-10B-01D-A21Q-09	ACACAG	ACACAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6aa00162-6294-4ce7-b6b7-0c3452e24cd6	8475f0ef-158e-493e-82b5-44e895dfc0a7	7	1888754	1888759	ACACAG	-	DEL	LOC100128374	ENST00000480694	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003:0.000:0.000:0.000:0.000:0.000	-	-	-	no_errors	AC110781.3	Clone_based_vega_gene	ENSG00000176349	tier1			0	0	0.00	0	0	0.00	0	0	0.00	0	0	0.00
PPM1B	0	genome.wustl.edu	37	2	44396279	44396280	+	R	INS	-	-	CGGAGGCGG			TCGA-IW-A3M4-01A-11D-A21Q-09	TCGA-IW-A3M4-10B-01D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6aa00162-6294-4ce7-b6b7-0c3452e24cd6	8475f0ef-158e-493e-82b5-44e895dfc0a7	2	44396279	44396280	-	CGGAGGCGG	INS	PPM1B	ENST00000378540	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000:0.999	-	-	-	no_errors	PPM1B	HGNC	ENSG00000138032	tier1			0	0	0.00	2	0	0.00	0	0	0.00	2	0	0.00
RPH3AL	0	genome.wustl.edu	37	17	185813	185874	+	R	DEL	AGGGCGACAGGGAGGAGATGGGGTTTAGAGGAGGGAAAAGAAGCTGGGACAAACATAAAAGA	AGGGCGACAGGGAGGAGATGGGGTTTAGAGGAGGGAAAAGAAGCTGGGACAAACATAAAAGA	-			TCGA-IW-A3M4-01A-11D-A21Q-09	TCGA-IW-A3M4-10B-01D-A21Q-09	AGGGCGACAGGGAGGAGATGGGGTTTAGAGGAGGGAAAAGAAGCTGGGACAAACATAAAAGA	AGGGCGACAGGGAGGAGATGGGGTTTAGAGGAGGGAAAAGAAGCTGGGACAAACATAAAAGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6aa00162-6294-4ce7-b6b7-0c3452e24cd6	8475f0ef-158e-493e-82b5-44e895dfc0a7	17	185813	185874	AGGGCGACAGGGAGGAGATGGGGTTTAGAGGAGGGAAAAGAAGCTGGGACAAACATAAAAGA	-	DEL	RPH3AL	ENST00000574011	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.001:0.001:0.001:0.000:0.000:0.000:0.001:0.001:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.001:0.000:0.005:0.007:0.006:0.001:0.000:0.000:0.000:0.000:0.001:0.001:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.008:0.009:0.053	-	-	-	no_errors	RPH3AL	HGNC	ENSG00000181031	tier1			1	0	0.00	1	0	0.00	1	0	0.00	1	0	0.00
ANKRD17	0	genome.wustl.edu	37	4	74012985	74012985	+	Nonsense_Mutation	SNP	C	C	A			TCGA-IW-A3M4-01A-11D-A21Q-09	TCGA-IW-A3M4-10B-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6aa00162-6294-4ce7-b6b7-0c3452e24cd6	8475f0ef-158e-493e-82b5-44e895dfc0a7	4	74012985	74012985	C	A	SNP	ANKRD17	ENST00000358602	human	ensembl	74_37	-1	known	nonsense	c.1732	p.E578*	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_KH_dom_type_1,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_KH_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_KH_dom_type_1,prints_Ankyrin_rpt	-	no_errors	ANKRD17	HGNC	ENSG00000132466	tier1	-	-	48	0	0.00	40	5	11.11	136	0	0.00	118	2	1.67
ENSG00000236295	0	genome.wustl.edu	37	2	217735201	217735202	+	R	INS	-	-	A			TCGA-IW-A3M4-01A-11D-A21Q-09	TCGA-IW-A3M4-10B-01D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6aa00162-6294-4ce7-b6b7-0c3452e24cd6	8475f0ef-158e-493e-82b5-44e895dfc0a7	2	217735201	217735202	-	A	INS	ENSG00000236295	ENST00000418591	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002:0.002	-	-	-	no_errors	AC007563.1	Clone_based_vega_gene	ENSG00000236295	tier1			9	0	0.00	16	4	20.00	37	0	0.00	30	3	9.09
