Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
MAGEA11	0	genome.wustl.edu	37	X	148798425	148798425	+	Missense_Mutation	SNP	G	G	A			TCGA-K1-A3PN-01A-11D-A228-09	TCGA-K1-A3PN-10A-01D-A22A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0e554430-e3c5-4c9b-9681-3e9c0f4236f1	b24e4a7b-236b-4dbe-9b7a-6c8427f8e423	X	148798425	148798425	G	A	SNP	MAGEA11	ENST00000355220	human	ensembl	74_37	+1	known	missense	c.1279	p.E427K	0.015	NULL	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA11	HGNC	ENSG00000185247	tier1	-	-	43	0	0.00	30	26	46.43	77	0	0.00	51	30	37.04
KIAA1919	0	genome.wustl.edu	37	6	111587229	111587229	+	Missense_Mutation	SNP	A	A	T			TCGA-K1-A3PN-01A-11D-A228-09	TCGA-K1-A3PN-10A-01D-A22A-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0e554430-e3c5-4c9b-9681-3e9c0f4236f1	b24e4a7b-236b-4dbe-9b7a-6c8427f8e423	6	111587229	111587229	A	T	SNP	KIAA1919	ENST00000368847	human	ensembl	74_37	+1	known	missense	c.464	p.E155V	0.273	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	KIAA1919	HGNC	ENSG00000173214	tier1	-	-	24	0	0.00	1	7	87.50	100	0	0.00	50	48	48.98
PVRL3	0	genome.wustl.edu	37	3	110911220	110911220	+	Missense_Mutation	SNP	C	C	T			TCGA-K1-A3PN-01A-11D-A228-09	TCGA-K1-A3PN-10A-01D-A22A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0e554430-e3c5-4c9b-9681-3e9c0f4236f1	b24e4a7b-236b-4dbe-9b7a-6c8427f8e423	3	110911220	110911220	C	T	SNP	PVRL3	ENST00000493615	human	ensembl	74_37	+1	putative	missense	c.1244	p.T415I	1.000	NULL	pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	PVRL3	HGNC	ENSG00000177707	tier1	-	-	45	0	0.00	23	20	46.51	91	0	0.00	57	41	41.84
SPO11	0	genome.wustl.edu	37	20	55917803	55917803	+	Missense_Mutation	SNP	T	T	A			TCGA-K1-A3PN-01A-11D-A228-09	TCGA-K1-A3PN-10A-01D-A22A-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0e554430-e3c5-4c9b-9681-3e9c0f4236f1	b24e4a7b-236b-4dbe-9b7a-6c8427f8e423	20	55917803	55917803	T	A	SNP	SPO11	ENST00000371263	human	ensembl	74_37	+1	known	missense	c.978	p.D326E	0.991	superfamily_Spo11/TopoVI_A,prints_Meiotic_Spo11	pfam_Meiosis_Spo11,pfam_Spo11/TopoVI_A_N,superfamily_Spo11/TopoVI_A,prints_Meiotic_Spo11,prints_Spo11/TopoVI_A,prints_TopoVI_A	-	no_errors	SPO11	HGNC	ENSG00000054796	tier1	-	-	13	0	0.00	14	16	53.33	129	0	0.00	70	69	49.64
PSME4	0	genome.wustl.edu	37	2	54176323	54176323	+	Missense_Mutation	SNP	T	T	C			TCGA-K1-A3PN-01A-11D-A228-09	TCGA-K1-A3PN-10A-01D-A22A-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0e554430-e3c5-4c9b-9681-3e9c0f4236f1	b24e4a7b-236b-4dbe-9b7a-6c8427f8e423	2	54176323	54176323	T	C	SNP	PSME4	ENST00000404125	human	ensembl	74_37	-1	known	missense	c.340	p.S114G	1.000	NULL	pfam_DUF3437,superfamily_ARM-type_fold	-	no_errors	PSME4	HGNC	ENSG00000068878	tier1	-	-	26	0	0.00	16	22	57.89	120	0	0.00	56	54	49.09
OR52W1	0	genome.wustl.edu	37	11	6221371	6221371	+	Silent	SNP	A	A	G			TCGA-K1-A3PN-01A-11D-A228-09	TCGA-K1-A3PN-10A-01D-A22A-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0e554430-e3c5-4c9b-9681-3e9c0f4236f1	b24e4a7b-236b-4dbe-9b7a-6c8427f8e423	11	6221371	6221371	A	G	SNP	OR52W1	ENST00000311352	human	ensembl	74_37	+1	known	silent	c.918	p.R306	0.072	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	-	no_errors	OR52W1	HGNC	ENSG00000175485	tier1	-	-	44	0	0.00	18	21	53.85	146	0	0.00	53	52	49.52
IK	0	genome.wustl.edu	37	5	140038905	140038905	+	Missense_Mutation	SNP	G	G	T			TCGA-K1-A3PN-01A-11D-A228-09	TCGA-K1-A3PN-10A-01D-A22A-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0e554430-e3c5-4c9b-9681-3e9c0f4236f1	b24e4a7b-236b-4dbe-9b7a-6c8427f8e423	5	140038905	140038905	G	T	SNP	IK	ENST00000417647	human	ensembl	74_37	+1	known	missense	c.1182	p.M394I	0.990	NULL	pfam_RED_N,pfam_RED_C	-	no_errors	IK	HGNC	ENSG00000113141	tier1	-	-	34	0	0.00	23	23	50.00	119	0	0.00	73	50	40.65
DH17	0	genome.wustl.edu	37	17	76503585	76503585	+	Silent	SNP	G	G	A			TCGA-K1-A3PN-01A-11D-A228-09	TCGA-K1-A3PN-10A-01D-A22A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0e554430-e3c5-4c9b-9681-3e9c0f4236f1	b24e4a7b-236b-4dbe-9b7a-6c8427f8e423	17	76503585	76503585	G	A	SNP	DH17	ENST00000389840	human	ensembl	74_37	-1	known	silent	c.4527	p.L1509	0.970	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_HR1_rho-bd	-	no_errors	DH17	HGNC	ENSG00000187775	tier1	-	-	40	0	0.00	15	16	51.61	57	0	0.00	41	42	50.60
ENSG00000244227	0	genome.wustl.edu	37	3	167630632	167630632	+	R	SNP	A	A	T			TCGA-K1-A3PN-01A-11D-A228-09	TCGA-K1-A3PN-10A-01D-A22A-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0e554430-e3c5-4c9b-9681-3e9c0f4236f1	b24e4a7b-236b-4dbe-9b7a-6c8427f8e423	3	167630632	167630632	A	T	SNP	ENSG00000244227	ENST00000459923	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.937	-	-	-	no_errors	RP11-298O21.5	Clone_based_vega_gene	ENSG00000244227	tier1	-	-	77	0	0.00	68	56	45.16	76	0	0.00	42	38	47.50
PRRT3	0	genome.wustl.edu	37	3	9990873	9990873	+	Missense_Mutation	SNP	C	C	A			TCGA-K1-A3PN-01A-11D-A228-09	TCGA-K1-A3PN-10A-01D-A22A-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0e554430-e3c5-4c9b-9681-3e9c0f4236f1	b24e4a7b-236b-4dbe-9b7a-6c8427f8e423	3	9990873	9990873	C	A	SNP	PRRT3	ENST00000295984	human	ensembl	74_37	-1	known	missense	c.927	p.Q309H	0.010	NULL	NULL	-	no_errors	PRRT3	HGNC	ENSG00000163704	tier1	-	-	11	0	0.00	12	14	53.85	36	0	0.00	26	4	13.33
CTTN	0	genome.wustl.edu	37	11	70269070	70269070	+	Missense_Mutation	SNP	A	A	G			TCGA-K1-A3PN-01A-11D-A228-09	TCGA-K1-A3PN-10A-01D-A22A-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0e554430-e3c5-4c9b-9681-3e9c0f4236f1	b24e4a7b-236b-4dbe-9b7a-6c8427f8e423	11	70269070	70269070	A	G	SNP	CTTN	ENST00000301843	human	ensembl	74_37	+1	known	missense	c.926	p.K309R	0.997	pfam_Hs1_Cortactin,pfscan_Hs1_Cortactin	pfam_Hs1_Cortactin,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_Hs1_Cortactin,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox	-	no_errors	CTTN	HGNC	ENSG00000085733	tier1	-	-	99	0	0.00	40	38	48.72	110	0	0.00	48	30	38.46
AP3D1	0	genome.wustl.edu	37	19	2117232	2117232	+	Silent	SNP	T	T	A			TCGA-K1-A3PN-01A-11D-A228-09	TCGA-K1-A3PN-10A-01D-A22A-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0e554430-e3c5-4c9b-9681-3e9c0f4236f1	b24e4a7b-236b-4dbe-9b7a-6c8427f8e423	19	2117232	2117232	T	A	SNP	AP3D1	ENST00000355272	human	ensembl	74_37	-1	known	silent	c.1848	p.P616	0.403	superfamily_ARM-type_fold,pirsf_AP3_complex_dsu	pfam_BLV_receptor,pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_complex_dsu	-	no_errors	AP3D1	HGNC	ENSG00000065000	tier1	-	-	36	0	0.00	5	13	72.22	92	0	0.00	60	30	33.33
DCHS2	0	genome.wustl.edu	37	4	155253963	155253963	+	Missense_Mutation	SNP	A	A	G			TCGA-K1-A3PN-01A-11D-A228-09	TCGA-K1-A3PN-10A-01D-A22A-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0e554430-e3c5-4c9b-9681-3e9c0f4236f1	b24e4a7b-236b-4dbe-9b7a-6c8427f8e423	4	155253963	155253963	A	G	SNP	DCHS2	ENST00000357232	human	ensembl	74_37	-1	known	missense	c.1900	p.F634L	0.998	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_HTH_CenpB_D-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410	tier1	-	-	33	0	0.00	19	15	44.12	52	0	0.00	26	30	53.57
CDHR3	0	genome.wustl.edu	37	7	105671282	105671282	+	Missense_Mutation	SNP	T	T	A			TCGA-K1-A3PN-01A-11D-A228-09	TCGA-K1-A3PN-10A-01D-A22A-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0e554430-e3c5-4c9b-9681-3e9c0f4236f1	b24e4a7b-236b-4dbe-9b7a-6c8427f8e423	7	105671282	105671282	T	A	SNP	CDHR3	ENST00000317716	human	ensembl	74_37	+1	known	missense	c.2349	p.D783E	1.000	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDHR3	HGNC	ENSG00000128536	tier1	-	-	60	0	0.00	47	32	40.51	89	0	0.00	50	25	33.33
PLCG1	0	genome.wustl.edu	37	20	39792474	39792474	+	Splice_Site	SNP	G	G	T			TCGA-K1-A3PN-01A-11D-A228-09	TCGA-K1-A3PN-10A-01D-A22A-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0e554430-e3c5-4c9b-9681-3e9c0f4236f1	b24e4a7b-236b-4dbe-9b7a-6c8427f8e423	20	39792474	39792474	G	T	SNP	PLCG1	ENST00000244007	human	ensembl	74_37	+1	known	splice_site	c.1010+1	e10+1	1.000	-	-	-	no_errors	PLCG1	HGNC	ENSG00000124181	tier1	-	-	53	0	0.00	46	36	43.90	86	0	0.00	73	40	35.40
SEPT14	0	genome.wustl.edu	37	7	55910726	55910726	+	Missense_Mutation	SNP	G	G	T			TCGA-K1-A3PN-01A-11D-A228-09	TCGA-K1-A3PN-10A-01D-A22A-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0e554430-e3c5-4c9b-9681-3e9c0f4236f1	b24e4a7b-236b-4dbe-9b7a-6c8427f8e423	7	55910726	55910726	G	T	SNP	SEPT14	ENST00000388975	human	ensembl	74_37	-1	known	missense	c.467	p.S156Y	0.994	pfam_Cell_div_GTP-bd,superfamily_P-loop_NTPase,pirsf_Septin	pfam_Cell_div_GTP-bd,superfamily_P-loop_NTPase,pirsf_Septin	-	no_errors	SEPT14	HGNC	ENSG00000154997	tier1	-	-	37	0	0.00	10	10	50.00	120	0	0.00	69	48	41.03
HUWE1	0	genome.wustl.edu	37	X	53620560	53620560	+	Missense_Mutation	SNP	T	T	C			TCGA-K1-A3PN-01A-11D-A228-09	TCGA-K1-A3PN-10A-01D-A22A-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0e554430-e3c5-4c9b-9681-3e9c0f4236f1	b24e4a7b-236b-4dbe-9b7a-6c8427f8e423	X	53620560	53620560	T	C	SNP	HUWE1	ENST00000262854	human	ensembl	74_37	-1	known	missense	c.3505	p.T1169A	1.000	NULL	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/Ts_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758	tier1	-	-	27	0	0.00	16	11	40.74	82	0	0.00	53	31	36.90
HMGCS1	0	genome.wustl.edu	37	5	43293070	43293070	+	Missense_Mutation	SNP	C	C	A			TCGA-K1-A3PN-01A-11D-A228-09	TCGA-K1-A3PN-10A-01D-A22A-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0e554430-e3c5-4c9b-9681-3e9c0f4236f1	b24e4a7b-236b-4dbe-9b7a-6c8427f8e423	5	43293070	43293070	C	A	SNP	HMGCS1	ENST00000325110	human	ensembl	74_37	-1	known	missense	c.1189	p.A397S	1.000	pfam_HMG_CoA_synt_C,superfamily_Thiolase-like,tigrfam_HMG_CoA_synthase_euk	pfam_HMG_CoA_synt_C,pfam_HMG_CoA_synth_N,superfamily_Thiolase-like,tigrfam_HMG_CoA_synthase_euk	-	no_errors	HMGCS1	HGNC	ENSG00000112972	tier1	-	-	16	0	0.00	5	12	70.59	93	0	0.00	57	41	41.84
WDR78	0	genome.wustl.edu	37	1	67301325	67301325	+	Missense_Mutation	SNP	G	G	A			TCGA-K1-A3PN-01A-11D-A228-09	TCGA-K1-A3PN-10A-01D-A22A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0e554430-e3c5-4c9b-9681-3e9c0f4236f1	b24e4a7b-236b-4dbe-9b7a-6c8427f8e423	1	67301325	67301325	G	A	SNP	WDR78	ENST00000371026	human	ensembl	74_37	-1	known	missense	c.1717	p.P573S	0.425	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR78	HGNC	ENSG00000152763	tier1	-	-	32	0	0.00	12	6	33.33	89	0	0.00	53	51	49.04
SLC15A5	0	genome.wustl.edu	37	12	16392642	16392650	+	In_Frame_Del	DEL	CTCTCTTAG	CTCTCTTAG	-			TCGA-K1-A3PN-01A-11D-A228-09	TCGA-K1-A3PN-10A-01D-A22A-09	CTCTCTTAG	CTCTCTTAG	CTCTCTTAG	-	CTCTCTTAG	CTCTCTTAG	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0e554430-e3c5-4c9b-9681-3e9c0f4236f1	b24e4a7b-236b-4dbe-9b7a-6c8427f8e423	12	16392642	16392650	CTCTCTTAG	-	DEL	SLC15A5	ENST00000344941	human	ensembl	74_37	-1	novel	in_frame_del	c.1135_1127	p.SKRV376in_frame_delF	0.139:0.131:0.134:0.147:0.147:0.137:0.102:0.054:0.068	pfam_POT_fam,superfamily_MFS_dom_general_subst_transpt	pfam_POT_fam,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC15A5	HGNC	ENSG00000188991	tier1			90	0	0.00	65	14	17.72	90	0	0.00	65	14	17.72
AKD1	0	genome.wustl.edu	37	1	109394814	109394816	+	In_Frame_Del	DEL	TTC	TTC	-			TCGA-K1-A3PN-01A-11D-A228-09	TCGA-K1-A3PN-10A-01D-A22A-09	TTC	TTC	TTC	-	TTC	TTC	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0e554430-e3c5-4c9b-9681-3e9c0f4236f1	b24e4a7b-236b-4dbe-9b7a-6c8427f8e423	1	109394814	109394816	TTC	-	DEL	AKD1	ENST00000370001	human	ensembl	74_37	-1	known	in_frame_del	c.473_471	p.K157in_frame_del	0.000:0.009:0.013	NULL	pfam_TF_AT-hook	-	no_errors	AKD1	HGNC	ENSG00000162641	tier1			8	0	0.00	11	4	26.67	101	0	0.00	50	37	42.53
ALOX15B	0	genome.wustl.edu	37	17	7945777	7945777	+	Missense_Mutation	SNP	G	G	T			TCGA-K1-A3PN-01A-11D-A228-09	TCGA-K1-A3PN-10A-01D-A22A-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0e554430-e3c5-4c9b-9681-3e9c0f4236f1	b24e4a7b-236b-4dbe-9b7a-6c8427f8e423	17	7945777	7945777	G	T	SNP	ALOX15B	ENST00000380183	human	ensembl	74_37	+1	known	missense	c.540	p.K180N	0.878	superfamily_LipOase_C	pfam_LipOase_C,pfam_PLAT/LH2_dom,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom,prints_LipOase_mml,prints_LipOase_C	-	no_errors	ALOX15B	HGNC	ENSG00000179593	tier1	-	-	17	0	0.00	1	9	90.00	89	0	0.00	9	54	85.71
FAM83B	0	genome.wustl.edu	37	6	54805246	54805246	+	Missense_Mutation	SNP	C	C	T			TCGA-K1-A3PN-01A-11D-A228-09	TCGA-K1-A3PN-10A-01D-A22A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0e554430-e3c5-4c9b-9681-3e9c0f4236f1	b24e4a7b-236b-4dbe-9b7a-6c8427f8e423	6	54805246	54805246	C	T	SNP	FAM83B	ENST00000306858	human	ensembl	74_37	+1	known	missense	c.1477	p.R493C	1.000	NULL	pfam_DUF1669	-	no_errors	FAM83B	HGNC	ENSG00000168143	tier1	-	-	28	0	0.00	3	21	87.50	172	0	0.00	9	78	89.66
KRT32	0	genome.wustl.edu	37	17	39619137	39619137	+	Silent	SNP	G	G	T			TCGA-K1-A3PN-01A-11D-A228-09	TCGA-K1-A3PN-10A-01D-A22A-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0e554430-e3c5-4c9b-9681-3e9c0f4236f1	b24e4a7b-236b-4dbe-9b7a-6c8427f8e423	17	39619137	39619137	G	T	SNP	KRT32	ENST00000225899	human	ensembl	74_37	-1	known	silent	c.1162	p.R388	0.999	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT32	HGNC	ENSG00000108759	tier1	-	-	39	0	0.00	21	26	55.32	8	0	0.00	7	7	50.00
SMCHD1	0	genome.wustl.edu	37	18	2656092	2656092	+	Silent	SNP	C	C	T			TCGA-K1-A3PN-01A-11D-A228-09	TCGA-K1-A3PN-10A-01D-A22A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0e554430-e3c5-4c9b-9681-3e9c0f4236f1	b24e4a7b-236b-4dbe-9b7a-6c8427f8e423	18	2656092	2656092	C	T	SNP	SMCHD1	ENST00000320876	human	ensembl	74_37	+1	known	silent	c.18	p.G6	0.917	NULL	pfam_SMC_hinge,superfamily_SMC_hinge,superfamily_HATPase_ATP-bd,smart_SMC_hinge	-	no_errors	SMCHD1	HGNC	ENSG00000101596	tier1	-	-	34	0	0.00	17	18	47.37	10	0	0.00	9	6	40.00
TP53	0	genome.wustl.edu	37	17	7577568	7577568	+	Missense_Mutation	SNP	C	C	T			TCGA-K1-A3PN-01A-11D-A228-09	TCGA-K1-A3PN-10A-01D-A22A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0e554430-e3c5-4c9b-9681-3e9c0f4236f1	b24e4a7b-236b-4dbe-9b7a-6c8427f8e423	17	7577568	7577568	C	T	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.713	p.C238Y	1.000	pfam_p53_D-bd,superfamily_p53-like_TF_D-bd,prints_p53_tumour_suppressor	pfam_p53_D-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_D-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	-	-	53	0	0.00	0	16	100.00	66	0	0.00	5	44	89.80
ANP32BP1	0	genome.wustl.edu	37	15	75614887	75614887	+	R	SNP	G	G	A			TCGA-K1-A3PN-01A-11D-A228-09	TCGA-K1-A3PN-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0e554430-e3c5-4c9b-9681-3e9c0f4236f1	b24e4a7b-236b-4dbe-9b7a-6c8427f8e423	15	75614887	75614887	G	A	SNP	ANP32BP1	ENST00000564205	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.017	-	-	-	no_errors	ANP32BP1	HGNC	ENSG00000259790	tier1	-	-	42	0	0.00	29	18	38.30	5	0	0.00	7	0	0.00
SRC	0	genome.wustl.edu	37	20	36032316	36032316	+	R	SNP	C	C	T			TCGA-K1-A3PN-01A-11D-A228-09	TCGA-K1-A3PN-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0e554430-e3c5-4c9b-9681-3e9c0f4236f1	b24e4a7b-236b-4dbe-9b7a-6c8427f8e423	20	36032316	36032316	C	T	SNP	SRC	ENST00000477066	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	SRC	HGNC	ENSG00000197122	tier1	-	-	31	0	0.00	36	17	32.08	17	0	0.00	9	0	0.00
CYP2A6	0	genome.wustl.edu	37	19	41354534	41354534	+	Missense_Mutation	SNP	G	G	T			TCGA-K1-A3PN-01A-11D-A228-09	TCGA-K1-A3PN-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0e554430-e3c5-4c9b-9681-3e9c0f4236f1	b24e4a7b-236b-4dbe-9b7a-6c8427f8e423	19	41354534	41354534	G	T	SNP	CYP2A6	ENST00000301141	human	ensembl	74_37	-1	known	missense	c.478	p.L160I	0.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2A-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP2A6	HGNC	ENSG00000255974	tier1	rs60563539	-	66	0	0.00	52	7	11.86	0	0	0.00	0	0	0.00
DNM1P46	0	genome.wustl.edu	37	15	100340305	100340305	+	R	SNP	T	T	A			TCGA-K1-A3PN-01A-11D-A228-09	TCGA-K1-A3PN-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0e554430-e3c5-4c9b-9681-3e9c0f4236f1	b24e4a7b-236b-4dbe-9b7a-6c8427f8e423	15	100340305	100340305	T	A	SNP	DNM1P46	ENST00000341853	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.986	-	-	-	no_errors	DNM1P46	HGNC	ENSG00000182397	tier1	-	-	46	0	0.00	37	4	9.76	0	0	0.00	0	0	0.00
ENSG00000221492	0	genome.wustl.edu	37	1	51656628	51656629	+	R	INS	-	-	A			TCGA-K1-A3PN-01A-11D-A228-09	TCGA-K1-A3PN-10A-01D-A22A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0e554430-e3c5-4c9b-9681-3e9c0f4236f1	b24e4a7b-236b-4dbe-9b7a-6c8427f8e423	1	51656628	51656629	-	A	INS	ENSG00000221492	ENST00000408565	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.273:0.275	-	-	-	no_errors	AL162430.1	Clone_based_ensembl_gene	ENSG00000221492	tier1			30	0	0.00	16	14	46.67	0	0	0.00	0	0	0.00
KCP	0	genome.wustl.edu	37	7	128547390	128547390	+	R	SNP	G	G	A			TCGA-K1-A3PN-01A-11D-A228-09	TCGA-K1-A3PN-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0e554430-e3c5-4c9b-9681-3e9c0f4236f1	b24e4a7b-236b-4dbe-9b7a-6c8427f8e423	7	128547390	128547390	G	A	SNP	KCP	ENST00000297801	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.180	-	-	-	no_errors	KCP	HGNC	ENSG00000135253	tier1	-	-	16	0	0.00	11	9	45.00	4	0	0.00	0	1	100.00
DLGAP1	0	genome.wustl.edu	37	18	3729210	3729210	+	Missense_Mutation	SNP	C	C	T			TCGA-K1-A3PN-01A-11D-A228-09	TCGA-K1-A3PN-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0e554430-e3c5-4c9b-9681-3e9c0f4236f1	b24e4a7b-236b-4dbe-9b7a-6c8427f8e423	18	3729210	3729210	C	T	SNP	DLGAP1	ENST00000315677	human	ensembl	74_37	-1	known	missense	c.1516	p.D506N	1.000	NULL	pfam_GKAP	-	no_errors	DLGAP1	HGNC	ENSG00000170579	tier1	-	-	43	0	0.00	38	41	51.90	4	0	0.00	8	8	50.00
ATXN1L	0	genome.wustl.edu	37	16	71884767	71884768	+	Frame_Shift_Ins	INS	-	-	G			TCGA-K1-A3PN-01A-11D-A228-09	TCGA-K1-A3PN-10A-01D-A22A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0e554430-e3c5-4c9b-9681-3e9c0f4236f1	b24e4a7b-236b-4dbe-9b7a-6c8427f8e423	16	71884767	71884768	-	G	INS	ATXN1L	ENST00000427980	human	ensembl	74_37	+1	known	frame_shift_ins	c.1124_1125	p.R377fs	1.000:0.993	NULL	pfam_Ataxin-1_HBP1,superfamily_Ataxin-1_HBP1,smart_Ataxin_AXH_dom,pfscan_Ataxin-1_HBP1	-	no_errors	ATXN1L	HGNC	ENSG00000224470	tier1			25	0	0.00	4	13	76.47	99	0	0.00	63	2	3.08
