Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
MYADML	0	genome.wustl.edu	37	2	33952223	33952223	+	R	SNP	G	G	T			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	2	33952223	33952223	G	T	SNP	MYADML	ENST00000474610	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	MYADML	HGNC	ENSG00000239649	tier1	-	-	43	0	0.00	33	8	19.51	116	0	0.00	81	13	13.83
CEP350	0	genome.wustl.edu	37	1	179966060	179966060	+	Silent	SNP	C	C	T			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	1	179966060	179966060	C	T	SNP	CEP350	ENST00000367607	human	ensembl	74_37	+1	known	silent	c.768	p.D256	0.938	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	-	no_errors	CEP350	HGNC	ENSG00000135837	tier1	-	-	39	0	0.00	63	10	13.70	107	0	0.00	148	23	13.45
NME1-NME2	0	genome.wustl.edu	37	17	49245607	49245607	+	Missense_Mutation	SNP	C	C	G			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	17	49245607	49245607	C	G	SNP	NME1-NME2	ENST00000608447	human	ensembl	74_37	+1	known	missense	c.551	p.S184C	0.999	pfam_Nucleoside_diP_kinase,superfamily_Nucleoside_diP_kinase,smart_Nucleoside_diP_kinase	pfam_Nucleoside_diP_kinase,superfamily_Nucleoside_diP_kinase,smart_Nucleoside_diP_kinase,prints_Nucleoside_diP_kinase	-	no_errors	NME1-NME2	HGNC	ENSG00000243678	tier1	-	-	66	0	0.00	93	15	13.89	113	0	0.00	113	23	16.79
RASGEF1C	0	genome.wustl.edu	37	5	179528441	179528441	+	R	SNP	G	G	A			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	5	179528441	179528441	G	A	SNP	RASGEF1C	ENST00000519456	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.918	-	-	-	no_errors	RASGEF1C	HGNC	ENSG00000146090	tier1	-	-	57	0	0.00	23	8	25.00	20	0	0.00	19	6	24.00
CCNT2	0	genome.wustl.edu	37	2	135694493	135694493	+	Missense_Mutation	SNP	A	A	G			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	2	135694493	135694493	A	G	SNP	CCNT2	ENST00000264157	human	ensembl	74_37	+1	known	missense	c.323	p.H108R	1.000	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNT2	HGNC	ENSG00000082258	tier1	-	-	21	0	0.00	32	18	36.00	94	0	0.00	92	52	35.86
OBSCN	0	genome.wustl.edu	37	1	228401199	228401199	+	Missense_Mutation	SNP	C	C	T			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	1	228401199	228401199	C	T	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.1046	p.S349L	0.992	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	tier1	-	-	70	0	0.00	34	20	37.04	39	0	0.00	25	11	30.56
ANKRA2	0	genome.wustl.edu	37	5	72858439	72858439	+	Missense_Mutation	SNP	C	C	T			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	5	72858439	72858439	C	T	SNP	ANKRA2	ENST00000296785	human	ensembl	74_37	-1	known	missense	c.268	p.V90M	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRA2	HGNC	ENSG00000164331	tier1	-	-	68	0	0.00	62	22	26.19	97	0	0.00	58	22	27.50
ANKRD36BP1	0	genome.wustl.edu	37	1	168215941	168215941	+	R	SNP	G	G	C			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	1	168215941	168215941	G	C	SNP	ANKRD36BP1	ENST00000358576	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.987	-	-	-	no_errors	ANKRD36BP1	HGNC	ENSG00000214262	tier1	-	-	68	0	0.00	103	20	16.26	106	0	0.00	189	30	13.70
CUL4B	0	genome.wustl.edu	37	X	119670866	119670866	+	Silent	SNP	C	C	G			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	X	119670866	119670866	C	G	SNP	CUL4B	ENST00000404115	human	ensembl	74_37	-1	known	silent	c.2016	p.P672	1.000	pfam_Cullin_N,superfamily_Cullin_homology,smart_Cullin_homology,pfscan_Cullin_homology	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL4B	HGNC	ENSG00000158290	tier1	-	-	31	0	0.00	6	32	84.21	41	0	0.00	15	37	71.15
EPHX1	0	genome.wustl.edu	37	1	226026987	226026987	+	Missense_Mutation	SNP	A	A	G			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	1	226026987	226026987	A	G	SNP	EPHX1	ENST00000272167	human	ensembl	74_37	+1	known	missense	c.662	p.Y221C	0.992	pfam_AB_hydrolase_1,pirsf_Epoxide_hydrolase	pfam_Epoxide_hydro_N,pfam_AB_hydrolase_1,pirsf_Epoxide_hydrolase,prints_Epox_hydrolase-like	-	no_errors	EPHX1	HGNC	ENSG00000143819	tier1	-	-	69	0	0.00	36	19	34.55	44	0	0.00	16	13	44.83
PRKDC	0	genome.wustl.edu	37	8	48739410	48739410	+	Nonsense_Mutation	SNP	G	G	A			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	8	48739410	48739410	G	A	SNP	PRKDC	ENST00000314191	human	ensembl	74_37	-1	known	nonsense	c.8587	p.Q2863*	0.998	NULL	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729	tier1	-	-	96	0	0.00	23	6	20.69	56	0	0.00	18	2	10.00
A2MP1	0	genome.wustl.edu	37	12	9416382	9416382	+	R	SNP	T	T	C			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	12	9416382	9416382	T	C	SNP	A2MP1	ENST00000544183	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	A2MP1	HGNC	ENSG00000256069	tier1	-	-	80	0	0.00	52	14	21.21	95	0	0.00	67	22	24.44
MYH3	0	genome.wustl.edu	37	17	10541189	10541189	+	Nonsense_Mutation	SNP	C	C	A			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	17	10541189	10541189	C	A	SNP	MYH3	ENST00000226209	human	ensembl	74_37	-1	known	nonsense	c.3793	p.E1265*	1.000	pfam_Myosin_tail,superfamily_Prefoldin	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH3	HGNC	ENSG00000109063	tier1	-	-	59	0	0.00	11	7	38.89	118	0	0.00	21	16	43.24
LCN	0	genome.wustl.edu	37	13	101763479	101763479	+	Missense_Mutation	SNP	C	C	T			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	13	101763479	101763479	C	T	SNP	LCN	ENST00000251127	human	ensembl	74_37	-1	known	missense	c.2291	p.R764H	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	LCN	HGNC	ENSG00000102452	tier1	-	-	45	0	0.00	10	34	77.27	68	0	0.00	10	36	78.26
SCUBE1	0	genome.wustl.edu	37	22	43600071	43600071	+	Missense_Mutation	SNP	T	T	C			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	22	43600071	43600071	T	C	SNP	SCUBE1	ENST00000360835	human	ensembl	74_37	-1	known	missense	c.2899	p.M967V	1.000	NULL	pfam_EGF-like_Ca-bd_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_EG-like_dom,pfam_CUB_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	SCUBE1	HGNC	ENSG00000159307	tier1	-	-	71	0	0.00	48	15	23.81	141	0	0.00	100	22	18.03
MYH3	0	genome.wustl.edu	37	17	10541190	10541190	+	Missense_Mutation	SNP	A	A	T			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	17	10541190	10541190	A	T	SNP	MYH3	ENST00000226209	human	ensembl	74_37	-1	known	missense	c.3792	p.N1264K	0.050	pfam_Myosin_tail,superfamily_Prefoldin	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH3	HGNC	ENSG00000109063	tier1	-	-	59	0	0.00	11	7	38.89	117	0	0.00	21	17	44.74
MAT2B	0	genome.wustl.edu	37	5	162943725	162943725	+	Missense_Mutation	SNP	G	G	C			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	5	162943725	162943725	G	C	SNP	MAT2B	ENST00000518095	human	ensembl	74_37	+1	known	missense	c.728	p.R243T	0.000	NULL	pfam_dTDP_dehydrorham_reduct,pfam_Epimerase_deHydtase,pfam_Polysac_CapD-like	-	no_errors	MAT2B	HGNC	ENSG00000038274	tier1	-	-	60	0	0.00	43	17	28.33	82	0	0.00	86	21	19.63
MYBPC2	0	genome.wustl.edu	37	19	50962526	50962526	+	Missense_Mutation	SNP	C	C	G			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	19	50962526	50962526	C	G	SNP	MYBPC2	ENST00000357701	human	ensembl	74_37	+1	known	missense	c.2754	p.N918K	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYBPC2	HGNC	ENSG00000086967	tier1	-	-	51	0	0.00	30	6	16.67	16	0	0.00	17	5	21.74
SURF6	0	genome.wustl.edu	37	9	136199122	136199122	+	Missense_Mutation	SNP	C	C	A			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	9	136199122	136199122	C	A	SNP	SURF6	ENST00000372022	human	ensembl	74_37	-1	known	missense	c.669	p.R223S	0.187	pfam_Surf6	pfam_Surf6	-	no_errors	SURF6	HGNC	ENSG00000148296	tier1	-	-	25	0	0.00	21	10	32.26	34	0	0.00	32	20	37.74
GRIA4	0	genome.wustl.edu	37	11	105850542	105850542	+	R	SNP	C	C	T			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	11	105850542	105850542	C	T	SNP	GRIA4	ENST00000533094	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	GRIA4	HGNC	ENSG00000152578	tier1	-	-	26	0	0.00	13	10	43.48	83	0	0.00	58	29	33.33
ENSG00000268845	0	genome.wustl.edu	37	19	6954619	6954619	+	R	SNP	T	T	C			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	19	6954619	6954619	T	C	SNP	ENSG00000268845	ENST00000593558	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.011	-	-	-	no_errors	RP11-1137G4.3	Clone_based_vega_gene	ENSG00000268845	tier1	-	-	84	0	0.00	128	27	17.42	166	0	0.00	125	44	25.88
ABCB1	0	genome.wustl.edu	37	7	87214969	87214969	+	Silent	SNP	A	A	G			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	7	87214969	87214969	A	G	SNP	ABCB1	ENST00000265724	human	ensembl	74_37	-1	known	silent	c.145	p.L49	0.210	superfamily_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB1	HGNC	ENSG00000085563	tier1	-	-	46	0	0.00	23	6	20.00	118	0	0.00	80	22	21.57
NRXN2	0	genome.wustl.edu	37	11	64374700	64374700	+	Missense_Mutation	SNP	T	T	C			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	11	64374700	64374700	T	C	SNP	NRXN2	ENST00000265459	human	ensembl	74_37	-1	known	missense	c.5107	p.K1703E	1.000	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN2	HGNC	ENSG00000110076	tier1	-	-	37	0	0.00	34	12	26.09	30	0	0.00	27	4	12.90
LPXN	0	genome.wustl.edu	37	11	58338061	58338061	+	Missense_Mutation	SNP	G	G	T			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	11	58338061	58338061	G	T	SNP	LPXN	ENST00000528954	human	ensembl	74_37	-1	known	missense	c.154	p.L52I	0.000	pirsf_Leupaxin	pfam_Znf_LIM,smart_Znf_LIM,pirsf_Leupaxin,pfscan_Znf_LIM	-	no_errors	LPXN	HGNC	ENSG00000110031	tier1	-	-	41	0	0.00	31	11	26.19	78	0	0.00	81	25	23.58
KLRG1	0	genome.wustl.edu	37	12	9162633	9162633	+	R	SNP	C	C	G			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	12	9162633	9162633	C	G	SNP	KLRG1	ENST00000538029	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.149	-	-	-	no_errors	KLRG1	HGNC	ENSG00000139187	tier1	-	-	11	0	0.00	16	7	30.43	58	0	0.00	25	13	34.21
DH9	0	genome.wustl.edu	37	17	11593505	11593505	+	Missense_Mutation	SNP	C	C	T			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	17	11593505	11593505	C	T	SNP	DH9	ENST00000262442	human	ensembl	74_37	+1	known	missense	c.4366	p.R1456W	0.951	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DH9	HGNC	ENSG00000007174	tier1	rs141375188	-	66	0	0.00	25	26	50.98	131	0	0.00	23	42	63.64
SAMD9	0	genome.wustl.edu	37	7	92735360	92735360	+	Silent	SNP	C	C	T			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	7	92735360	92735360	C	T	SNP	SAMD9	ENST00000379958	human	ensembl	74_37	-1	known	silent	c.51	p.E17	0.768	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,superfamily_P-loop_NTPase,smart_SAM,pfscan_SAM	-	no_errors	SAMD9	HGNC	ENSG00000205413	tier1	-	-	56	0	0.00	39	5	11.36	122	0	0.00	41	28	40.58
PLCB4	0	genome.wustl.edu	37	20	9404506	9404506	+	Missense_Mutation	SNP	A	A	C			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	20	9404506	9404506	A	C	SNP	PLCB4	ENST00000334005	human	ensembl	74_37	+1	known	missense	c.2395	p.I799L	1.000	pirsf_PLC-beta,superfamily_C2_dom,smart_C2_dom	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_PLC-beta_CS,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,prints_Pinositol_PLipase_C,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB4	HGNC	ENSG00000101333	tier1	-	-	60	0	0.00	37	17	30.91	136	1	0.73	62	34	35.42
LAMC3	0	genome.wustl.edu	37	9	133954581	133954581	+	Silent	SNP	C	C	T			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	9	133954581	133954581	C	T	SNP	LAMC3	ENST00000361069	human	ensembl	74_37	+1	known	silent	c.3823	p.L1275	0.318	NULL	pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_B_type_IV,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMC3	HGNC	ENSG00000050555	tier1	-	-	61	0	0.00	54	28	34.15	27	0	0.00	29	13	30.95
SOX4	0	genome.wustl.edu	37	6	21595992	21595992	+	Frame_Shift_Del	DEL	C	C	-			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	6	21595992	21595992	C	-	DEL	SOX4	ENST00000244745	human	ensembl	74_37	+1	known	frame_shift_del	c.1227	p.S411fs	1.000	pirsf_SOX-12/11/4a	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pirsf_SOX-12/11/4a,pfscan_HMG_box_dom	-	no_errors	SOX4	HGNC	ENSG00000124766	tier1			95	0	0.00	50	51	50.50	91	0	0.00	47	49	51.04
CTTN	0	genome.wustl.edu	37	11	70265954	70265954	+	Frame_Shift_Del	DEL	C	C	-			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	11	70265954	70265954	C	-	DEL	CTTN	ENST00000301843	human	ensembl	74_37	+1	known	frame_shift_del	c.671	p.Q225fs	1.000	pfam_Hs1_Cortactin,pfscan_Hs1_Cortactin	pfam_Hs1_Cortactin,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_Hs1_Cortactin,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox	-	no_errors	CTTN	HGNC	ENSG00000085733	tier1			64	0	0.00	50	23	31.51	148	0	0.00	82	28	25.45
DBF4B	0	genome.wustl.edu	37	17	42828395	42828395	+	Frame_Shift_Del	DEL	T	T	-			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	17	42828395	42828395	T	-	DEL	DBF4B	ENST00000315005	human	ensembl	74_37	+1	known	frame_shift_del	c.1622	p.G542fs	0.001	NULL	pfam_Znf_DBF,superfamily_BRCT_dom,smart_Znf_DBF	-	no_errors	DBF4B	HGNC	ENSG00000161692	tier1			65	0	0.00	73	22	23.16	92	0	0.00	75	13	14.77
ANKRD20A8P	0	genome.wustl.edu	37	2	95494915	95494915	+	R	SNP	C	C	T			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	2	95494915	95494915	C	T	SNP	ANKRD20A8P	ENST00000432432	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.911	-	-	-	no_errors	ANKRD20A8P	HGNC	ENSG00000229089	tier1	-	-	244	0	0.00	240	63	20.72	0	0	0.00	0	0	0.00
DDX11L9	0	genome.wustl.edu	37	15	102516816	102516816	+	R	SNP	G	G	T			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	15	102516816	102516816	G	T	SNP	DDX11L9	ENST00000559159	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DDX11L9	HGNC	ENSG00000248472	tier1	-	-	13	0	0.00	12	5	29.41	0	0	0.00	0	0	0.00
ENSG00000221281	0	genome.wustl.edu	37	6	67069388	67069389	+	R	INS	-	-	ACACACACACAT			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	6	67069388	67069389	-	ACACACACACAT	INS	ENSG00000221281	ENST00000408354	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.005:0.011	-	-	-	no_errors	AC002485.1	Clone_based_ensembl_gene	ENSG00000221281	tier1			0	0	0.00	0	0	0.00	0	0	0.00	0	0	0.00
ENSG00000265002	0	genome.wustl.edu	37	15	20563423	20563423	+	R	DEL	C	C	-			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	15	20563423	20563423	C	-	DEL	ENSG00000265002	ENST00000581090	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.102	-	-	-	no_errors	AC026495.1	Clone_based_ensembl_gene	ENSG00000265002	tier1			44	0	0.00	35	6	14.63	2	0	0.00	7	0	0.00
LOC388882	0	genome.wustl.edu	37	22	23825282	23825282	+	R	SNP	C	C	T			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	22	23825282	23825282	C	T	SNP	LOC388882	ENST00000320372	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AP000345.1	Clone_based_vega_gene	ENSG00000178248	tier1	-	-	313	1	0.32	249	70	21.94	0	0	0.00	0	0	0.00
POTEM	0	genome.wustl.edu	37	14	20012819	20012822	+	Frame_Shift_Del	DEL	AAAG	AAAG	-			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	AAAG	AAAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	14	20012819	20012822	AAAG	-	DEL	POTEM	ENST00000547722	human	ensembl	74_37	-1	known	frame_shift_del	c.937_934	p.I314fs	0.009:0.013:0.017:0.020	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	POTEM	HGNC	ENSG00000187537	tier1			42	0	0.00	52	8	13.33	0	0	0.00	0	0	0.00
C3orf55	0	genome.wustl.edu	37	3	157318056	157318056	+	Missense_Mutation	SNP	G	G	T			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	3	157318056	157318056	G	T	SNP	C3orf55	ENST00000449199	human	ensembl	74_37	+1	known	missense	c.377	p.C126F	0.000	NULL	NULL	-	no_errors	C3orf55	HGNC	ENSG00000174899	tier1	-	-	64	0	0.00	35	4	10.26	128	0	0.00	106	2	1.85
SEC14L5	0	genome.wustl.edu	37	16	5061242	5061242	+	Nonsense_Mutation	SNP	C	C	A			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	16	5061242	5061242	C	A	SNP	SEC14L5	ENST00000251170	human	ensembl	74_37	+1	known	nonsense	c.1947	p.Y649*	1.000	superfamily_GOLD,pfscan_GOLD	pfam_PRELI/MSF1,pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,superfamily_GOLD,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_GOLD,pfscan_PRELI/MSF1,prints_CRAL-bd_toc_tran	-	no_errors	SEC14L5	HGNC	ENSG00000103184	tier1	-	-	81	0	0.00	60	12	16.67	46	0	0.00	34	3	8.11
HUWE1	0	genome.wustl.edu	37	X	53589091	53589093	+	In_Frame_Del	DEL	TCC	TCC	-			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	TCC	TCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	X	53589091	53589093	TCC	-	DEL	HUWE1	ENST00000262854	human	ensembl	74_37	-1	known	in_frame_del	c.7319_7317	p.E2440in_frame_del	1.000:1.000:1.000	NULL	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/Ts_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758	tier1			27	0	0.00	20	3	13.04	25	0	0.00	43	2	4.44
NFAT5	0	genome.wustl.edu	37	16	69726420	69726422	+	In_Frame_Del	DEL	CAG	CAG	-			TCGA-MB-A8JK-01A-11D-A36J-09	TCGA-MB-A8JK-10A-01D-A36M-09	CAG	CAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	307db8e1-7146-4506-b618-eba5076a6860	9be6e5e2-2506-4a0a-9cb7-a0fcb5e7834a	16	69726420	69726422	CAG	-	DEL	NFAT5	ENST00000432919	human	ensembl	74_37	+1	known	in_frame_del	c.2692_2694	p.Q901in_frame_del	0.966:0.976:0.988	NULL	pfam_RHD,superfamily_p53-like_TF_D-bd,superfamily_Ig_E-set,smart_IPT,pfscan_RHD,prints_NFAT	-	no_errors	NFAT5	HGNC	ENSG00000102908	tier1			26	0	0.00	20	3	13.04	42	0	0.00	55	3	5.17
