Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
TMPRSS9	0	genome.wustl.edu	37	19	2425956	2425956	+	Missense_Mutation	SNP	A	A	C			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	19	2425956	2425956	A	C	SNP	TMPRSS9	ENST00000332578	human	ensembl	74_37	+1	known	missense	c.3050	p.E1017A	1.000	pirsf_Pept_S1A_polyserase-1,pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pirsf_Pept_S1A_polyserase-1,pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,pfam_LDrepeatLR_classA_rpt,superfamily_Trypsin-like_Pept_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1	-	no_errors	TMPRSS9	HGNC	ENSG00000178297	tier1	-	-	175	0	0.00	63	40	38.83	57	0	0.00	31	14	31.11
ABHD15	0	genome.wustl.edu	37	17	27889595	27889595	+	Missense_Mutation	SNP	C	C	T			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	17	27889595	27889595	C	T	SNP	ABHD15	ENST00000307201	human	ensembl	74_37	-1	known	missense	c.1391	p.R464Q	1.000	NULL	pirsf_AB-Hydro_YheT	-	no_errors	ABHD15	HGNC	ENSG00000168792	tier1	-	-	37	0	0.00	20	18	47.37	79	1	1.25	42	31	42.47
NRXN2	0	genome.wustl.edu	37	11	64418820	64418820	+	Missense_Mutation	SNP	A	A	G			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	11	64418820	64418820	A	G	SNP	NRXN2	ENST00000265459	human	ensembl	74_37	-1	known	missense	c.2825	p.L942P	1.000	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN2	HGNC	ENSG00000110076	tier1	-	-	39	0	0.00	37	4	9.76	71	0	0.00	69	8	10.39
WNT5A	0	genome.wustl.edu	37	3	55514826	55514826	+	Missense_Mutation	SNP	C	C	T			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	3	55514826	55514826	C	T	SNP	WNT5A	ENST00000264634	human	ensembl	74_37	-1	known	missense	c.127	p.A43T	1.000	NULL	pfam_Wnt,smart_Wnt,prints_Wnt	-	no_errors	WNT5A	HGNC	ENSG00000114251	tier1	-	-	46	0	0.00	25	23	46.94	106	0	0.00	67	39	36.79
B3GNT2	0	genome.wustl.edu	37	2	62449968	62449968	+	Missense_Mutation	SNP	C	C	T			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	2	62449968	62449968	C	T	SNP	B3GNT2	ENST00000301998	human	ensembl	74_37	+1	known	missense	c.613	p.H205Y	1.000	pfam_Glyco_trans_31	pfam_Glyco_trans_31	-	no_errors	B3GNT2	HGNC	ENSG00000170340	tier1	-	-	29	0	0.00	26	16	38.10	75	0	0.00	44	36	45.00
PHF21B	0	genome.wustl.edu	37	22	45312449	45312449	+	Missense_Mutation	SNP	G	G	T			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	22	45312449	45312449	G	T	SNP	PHF21B	ENST00000313237	human	ensembl	74_37	-1	known	missense	c.275	p.P92H	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF21B	HGNC	ENSG00000056487	tier1	-	-	84	0	0.00	85	41	32.54	16	0	0.00	27	13	32.50
PTPRU	0	genome.wustl.edu	37	1	29602104	29602104	+	Missense_Mutation	SNP	G	G	C			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	1	29602104	29602104	G	C	SNP	PTPRU	ENST00000345512	human	ensembl	74_37	+1	known	missense	c.1289	p.S430T	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRU	HGNC	ENSG00000060656	tier1	-	-	45	0	0.00	14	46	76.67	58	0	0.00	30	30	50.00
DBN1	0	genome.wustl.edu	37	5	176887695	176887695	+	Missense_Mutation	SNP	G	G	A			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	5	176887695	176887695	G	A	SNP	DBN1	ENST00000292385	human	ensembl	74_37	-1	known	missense	c.787	p.R263W	0.985	NULL	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin	-	no_errors	DBN1	HGNC	ENSG00000113758	tier1	-	-	67	0	0.00	38	28	42.42	156	0	0.00	83	46	35.66
LRG1	0	genome.wustl.edu	37	19	4538518	4538518	+	Missense_Mutation	SNP	G	G	C			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	19	4538518	4538518	G	C	SNP	LRG1	ENST00000306390	human	ensembl	74_37	-1	known	missense	c.478	p.L160V	0.324	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRG1	HGNC	ENSG00000171236	tier1	-	-	60	0	0.00	76	14	15.56	96	0	0.00	77	17	18.09
WDFY3	0	genome.wustl.edu	37	4	85731189	85731189	+	Silent	SNP	G	G	A			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	4	85731189	85731189	G	A	SNP	WDFY3	ENST00000295888	human	ensembl	74_37	-1	known	silent	c.2196	p.S732	0.999	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl_sf,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625	tier1	-	-	65	0	0.00	44	12	21.43	81	0	0.00	57	19	25.00
ENSG00000233863	0	genome.wustl.edu	37	8	35650777	35650777	+	Nonsense_Mutation	SNP	C	C	T			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	8	35650777	35650777	C	T	SNP	ENSG00000233863	ENST00000437887	human	ensembl	74_37	+1	known	nonsense	c.379	p.Q127*	0.009	NULL	NULL	-	no_errors	AC012215.1	Clone_based_ensembl_gene	ENSG00000233863	tier1	-	-	39	0	0.00	42	11	20.75	112	0	0.00	106	26	19.70
CLNK	0	genome.wustl.edu	37	4	10542196	10542196	+	Missense_Mutation	SNP	G	G	T			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	4	10542196	10542196	G	T	SNP	CLNK	ENST00000226951	human	ensembl	74_37	-1	known	missense	c.524	p.P175H	0.993	NULL	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	-	no_errors	CLNK	HGNC	ENSG00000109684	tier1	-	-	82	0	0.00	50	35	41.18	70	0	0.00	56	42	42.42
PDE1C	0	genome.wustl.edu	37	7	31855612	31855612	+	Missense_Mutation	SNP	C	C	A			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	7	31855612	31855612	C	A	SNP	PDE1C	ENST00000321453	human	ensembl	74_37	-1	known	missense	c.1739	p.R580L	0.122	NULL	pfam_PDEase_catalytic_dom,pfam_PDEase_N,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE1C	HGNC	ENSG00000154678	tier1	-	-	87	0	0.00	36	41	53.25	78	0	0.00	42	34	44.74
PSPC1	0	genome.wustl.edu	37	13	20325550	20325550	+	Silent	SNP	T	T	C			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	13	20325550	20325550	T	C	SNP	PSPC1	ENST00000338910	human	ensembl	74_37	-1	known	silent	c.828	p.A276	0.983	pfam_NOPS	pfam_RRM_dom,pfam_NOPS,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PSPC1	HGNC	ENSG00000121390	tier1	-	-	68	0	0.00	23	15	39.47	50	0	0.00	18	19	51.35
DOK3	0	genome.wustl.edu	37	5	176936610	176936610	+	Missense_Mutation	SNP	C	C	T			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	5	176936610	176936610	C	T	SNP	DOK3	ENST00000357198	human	ensembl	74_37	-1	known	missense	c.100	p.E34K	1.000	NULL	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	-	no_errors	DOK3	HGNC	ENSG00000146094	tier1	-	-	51	0	0.00	22	34	60.71	72	0	0.00	35	27	43.55
SPHKAP	0	genome.wustl.edu	37	2	228855866	228855866	+	Missense_Mutation	SNP	G	G	T			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	2	228855866	228855866	G	T	SNP	SPHKAP	ENST00000392056	human	ensembl	74_37	-1	known	missense	c.4809	p.S1603R	0.000	pfam_AKAP_110_C	pfam_AKAP_110_C	-	no_errors	SPHKAP	HGNC	ENSG00000153820	tier1	-	-	33	0	0.00	45	6	11.76	117	0	0.00	78	18	18.75
SMARCAL1	0	genome.wustl.edu	37	2	217343021	217343021	+	Missense_Mutation	SNP	A	A	G			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	2	217343021	217343021	A	G	SNP	SMARCAL1	ENST00000357276	human	ensembl	74_37	+1	known	missense	c.2624	p.K875R	1.000	superfamily_P-loop_NTPase	pfam_HARP_dom,pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCAL1	HGNC	ENSG00000138375	tier1	-	-	40	0	0.00	14	24	63.16	85	1	1.16	45	18	28.57
CCR4	0	genome.wustl.edu	37	3	32995907	32995907	+	Silent	SNP	C	C	T			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	3	32995907	32995907	C	T	SNP	CCR4	ENST00000330953	human	ensembl	74_37	+1	known	silent	c.993	p.Y331	0.627	prints_Chemokine_CCR4	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_CCR4,prints_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Chemokine_CXCR4,prints_ATII_rcpt,prints_Duffy_chemokine_rcpt	-	no_errors	CCR4	HGNC	ENSG00000183813	tier1	-	-	29	0	0.00	28	5	15.15	86	0	0.00	73	13	15.12
CRNKL1	0	genome.wustl.edu	37	20	20024254	20024254	+	Missense_Mutation	SNP	T	T	C			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	20	20024254	20024254	T	C	SNP	CRNKL1	ENST00000377340	human	ensembl	74_37	-1	known	missense	c.1337	p.Q446R	1.000	smart_HAT	pfam_HAT,pfam_Suf,smart_HAT,pfscan_TPR-contain_dom	-	no_errors	CRNKL1	HGNC	ENSG00000101343	tier1	-	-	60	0	0.00	27	20	42.55	139	0	0.00	58	58	50.00
KIAA1244	0	genome.wustl.edu	37	6	138645275	138645275	+	Missense_Mutation	SNP	G	G	A			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	6	138645275	138645275	G	A	SNP	KIAA1244	ENST00000251691	human	ensembl	74_37	+1	known	missense	c.4985	p.R1662Q	1.000	NULL	pfam_DUF1981_Sec7_assoc,superfamily_ARM-type_fold,superfamily_Sec7_dom,smart_Sec7_dom	-	no_errors	KIAA1244	HGNC	ENSG00000112379	tier1	-	-	34	0	0.00	33	8	19.51	31	0	0.00	33	4	10.81
ATP2B1	0	genome.wustl.edu	37	12	90028950	90028950	+	Missense_Mutation	SNP	G	G	C			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	12	90028950	90028950	G	C	SNP	ATP2B1	ENST00000261173	human	ensembl	74_37	-1	known	missense	c.485	p.S162C	1.000	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B1	HGNC	ENSG00000070961	tier1	-	-	71	0	0.00	68	17	20.00	162	0	0.00	166	20	10.75
TC2N	0	genome.wustl.edu	37	14	92251695	92251695	+	Silent	SNP	C	C	A			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	14	92251695	92251695	C	A	SNP	TC2N	ENST00000340892	human	ensembl	74_37	-1	known	silent	c.1173	p.V391	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	TC2N	HGNC	ENSG00000165929	tier1	-	-	39	0	0.00	38	10	20.83	139	0	0.00	133	29	17.90
SLC22A7	0	genome.wustl.edu	37	6	43269949	43269949	+	Missense_Mutation	SNP	A	A	T			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	6	43269949	43269949	A	T	SNP	SLC22A7	ENST00000372585	human	ensembl	74_37	+1	known	missense	c.1073	p.N358I	1.000	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A7	HGNC	ENSG00000137204	tier1	-	-	86	0	0.00	57	20	25.97	109	0	0.00	69	26	27.37
CES5A	0	genome.wustl.edu	37	16	55909115	55909115	+	Missense_Mutation	SNP	G	G	T			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	16	55909115	55909115	G	T	SNP	CES5A	ENST00000290567	human	ensembl	74_37	-1	known	missense	c.19	p.H7N	0.021	NULL	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CES5A	HGNC	ENSG00000159398	tier1	-	-	52	0	0.00	44	10	18.52	88	0	0.00	50	15	23.08
KIF19	0	genome.wustl.edu	37	17	72339230	72339230	+	Silent	SNP	C	C	T			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	17	72339230	72339230	C	T	SNP	KIF19	ENST00000389916	human	ensembl	74_37	+1	known	silent	c.387	p.N129	0.903	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	KIF19	HGNC	ENSG00000196169	tier1	-	-	46	0	0.00	25	7	21.88	47	0	0.00	42	13	23.64
MUC19	0	genome.wustl.edu	37	12	40867002	40867002	+	Missense_Mutation	SNP	A	A	G			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	12	40867002	40867002	A	G	SNP	MUC19	ENST00000454784	human	ensembl	74_37	+1	novel	missense	c.4009	p.T1337A	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich	-	no_errors	MUC19	HGNC	ENSG00000205592	tier1	-	-	31	0	0.00	33	15	31.25	118	0	0.00	92	41	30.83
MKRN3	0	genome.wustl.edu	37	15	23811912	23811912	+	Missense_Mutation	SNP	G	G	A			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	15	23811912	23811912	G	A	SNP	MKRN3	ENST00000314520	human	ensembl	74_37	+1	known	missense	c.983	p.R328H	1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_C3HC4_RING-type,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	MKRN3	HGNC	ENSG00000179455	tier1	-	-	49	0	0.00	32	18	36.00	128	0	0.00	68	39	36.11
PAQR5	0	genome.wustl.edu	37	15	69682069	69682069	+	Silent	SNP	C	C	A			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	15	69682069	69682069	C	A	SNP	PAQR5	ENST00000340965	human	ensembl	74_37	+1	known	silent	c.462	p.A154	0.213	pfam_HlyIII-related	pfam_HlyIII-related	-	no_errors	PAQR5	HGNC	ENSG00000137819	tier1	-	-	53	0	0.00	34	6	15.00	92	0	0.00	49	24	32.88
UNC79	0	genome.wustl.edu	37	14	94008839	94008839	+	Missense_Mutation	SNP	A	A	C			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	14	94008839	94008839	A	C	SNP	UNC79	ENST00000553484	human	ensembl	74_37	+1	known	missense	c.1552	p.T518P	1.000	NULL	superfamily_P-loop_NTPase,superfamily_ARM-type_fold	-	no_errors	UNC79	HGNC	ENSG00000133958	tier1	-	-	69	0	0.00	75	14	15.73	76	0	0.00	93	14	12.96
ASRGL1	0	genome.wustl.edu	37	11	62156674	62156674	+	Silent	SNP	C	C	T			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	11	62156674	62156674	C	T	SNP	ASRGL1	ENST00000301776	human	ensembl	74_37	+1	known	silent	c.561	p.G187	0.965	pfam_Peptidase_T2	pfam_Peptidase_T2	-	no_errors	ASRGL1	HGNC	ENSG00000162174	tier1	rs150568119	-	86	0	0.00	75	16	17.58	103	0	0.00	72	19	20.88
CHPF	0	genome.wustl.edu	37	2	220405754	220405754	+	Missense_Mutation	SNP	G	G	A			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	2	220405754	220405754	G	A	SNP	CHPF	ENST00000243776	human	ensembl	74_37	-1	known	missense	c.982	p.R328C	0.078	pfam_Chond_Galc	pfam_Chond_Galc	-	no_errors	CHPF	HGNC	ENSG00000123989	tier1	-	-	72	0	0.00	46	12	20.69	72	0	0.00	53	18	25.00
ZNF536	0	genome.wustl.edu	37	19	30935048	30935048	+	Silent	SNP	C	C	T			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	19	30935048	30935048	C	T	SNP	ZNF536	ENST00000355537	human	ensembl	74_37	+1	known	silent	c.579	p.R193	0.622	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF536	HGNC	ENSG00000198597	tier1	-	-	48	0	0.00	55	6	9.84	18	0	0.00	13	2	13.33
SNORD3B-2	0	genome.wustl.edu	37	17	18967187	18967187	+	R	SNP	G	G	A			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	17	18967187	18967187	G	A	SNP	SNORD3B-2	ENST00000571722	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNORD3B-2	HGNC	ENSG00000262074	tier1	-	-	68	0	0.00	133	15	10.07	121	0	0.00	146	24	14.12
LRP1B	0	genome.wustl.edu	37	2	141660728	141660728	+	Missense_Mutation	SNP	C	C	T			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	2	141660728	141660728	C	T	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.3527	p.C1176Y	1.000	smart_EG-like_dom	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702	tier1	-	-	20	0	0.00	15	4	21.05	83	0	0.00	31	13	29.55
BNC1	0	genome.wustl.edu	37	15	83926276	83926276	+	Missense_Mutation	SNP	G	G	A			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	15	83926276	83926276	G	A	SNP	BNC1	ENST00000345382	human	ensembl	74_37	-1	known	missense	c.2903	p.S968L	1.000	smart_Znf_C2H2-like	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BNC1	HGNC	ENSG00000169594	tier1	-	-	58	0	0.00	24	32	57.14	130	0	0.00	37	55	59.78
SORBS2	0	genome.wustl.edu	37	4	186544971	186544971	+	Missense_Mutation	SNP	C	C	T			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	4	186544971	186544971	C	T	SNP	SORBS2	ENST00000284776	human	ensembl	74_37	-1	known	missense	c.1600	p.V534I	0.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Sorb,superfamily_SH3_domain,smart_Sorb,smart_SH3_domain,pfscan_Sorb,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox	-	no_errors	SORBS2	HGNC	ENSG00000154556	tier1	-	-	18	0	0.00	23	6	20.69	85	0	0.00	77	13	14.44
FAM183B	0	genome.wustl.edu	37	7	38725207	38725207	+	Silent	SNP	G	G	T			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	7	38725207	38725207	G	T	SNP	FAM183B	ENST00000409072	human	ensembl	74_37	-1	novel	silent	c.399	p.R133	0.019	NULL	NULL	-	no_errors	FAM183B	HGNC	ENSG00000164556	tier1	-	-	38	0	0.00	27	6	18.18	86	0	0.00	59	9	13.24
RIMS2	0	genome.wustl.edu	37	8	105106900	105106900	+	Missense_Mutation	SNP	A	A	G			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	8	105106900	105106900	A	G	SNP	RIMS2	ENST00000436393	human	ensembl	74_37	+1	novel	missense	c.3089	p.E1030G	1.000	NULL	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	RIMS2	HGNC	ENSG00000176406	tier1	-	-	19	0	0.00	17	23	57.50	109	0	0.00	78	57	42.22
GAS2L3	0	genome.wustl.edu	37	12	100994198	100994198	+	Silent	SNP	T	T	C			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	12	100994198	100994198	T	C	SNP	GAS2L3	ENST00000266754	human	ensembl	74_37	+1	known	silent	c.57	p.S19	1.000	NULL	pfam_GAS2_dom,pfam_CH-domain,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_GAS2_dom,pfscan_CH-domain	-	no_errors	GAS2L3	HGNC	ENSG00000139354	tier1	-	-	52	0	0.00	53	6	10.17	51	0	0.00	42	9	17.65
HMBOX1	0	genome.wustl.edu	37	8	28908583	28908583	+	Missense_Mutation	SNP	G	G	A			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	8	28908583	28908583	G	A	SNP	HMBOX1	ENST00000444075	human	ensembl	74_37	+1	known	missense	c.1243	p.V415M	1.000	NULL	pfam_HNF-1_N,pfam_Homeobox_dom,superfamily_Lambda_D-bd_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	HMBOX1	HGNC	ENSG00000147421	tier1	-	-	41	0	0.00	11	5	31.25	52	0	0.00	32	8	20.00
PLX2	0	genome.wustl.edu	37	1	208391096	208391097	+	Frame_Shift_Ins	INS	-	-	A			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	1	208391096	208391097	-	A	INS	PLX2	ENST00000367033	human	ensembl	74_37	-1	known	frame_shift_ins	c.172_171	p.G57fs	0.302:0.070	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLX2	HGNC	ENSG00000076356	tier1			54	0	0.00	51	15	22.73	84	0	0.00	50	14	21.88
ENSG00000218416	0	genome.wustl.edu	37	2	241390284	241390284	+	Frame_Shift_Del	DEL	C	C	-			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	2	241390284	241390284	C	-	DEL	ENSG00000218416	ENST00000404327	human	ensembl	74_37	-1	putative	frame_shift_del	c.123	p.N42fs	0.001	NULL	NULL	-	no_errors	AC110619.2	Clone_based_vega_gene	ENSG00000218416	tier1			56	0	0.00	28	28	50.00	71	0	0.00	35	32	47.76
KMT2C	0	genome.wustl.edu	37	7	151842337	151842337	+	Frame_Shift_Del	DEL	C	C	-			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	7	151842337	151842337	C	-	DEL	KMT2C	ENST00000355193	human	ensembl	74_37	-1	known	frame_shift_del	c.14246	p.G4749fs	1.000	pfam_FYrich_C,smart_FYrich_C	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2C	HGNC	ENSG00000055609	tier1			88	0	0.00	43	11	20.37	134	0	0.00	100	21	17.36
TP53	0	genome.wustl.edu	37	17	7577114	7577114	+	Frame_Shift_Del	DEL	C	C	-			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	17	7577114	7577114	C	-	DEL	TP53	ENST00000269305	human	ensembl	74_37	-1	known	frame_shift_del	c.824	p.C275fs	1.000	pfam_p53_D-bd,superfamily_p53-like_TF_D-bd,prints_p53_tumour_suppressor	pfam_p53_D-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_D-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1			32	0	0.00	12	8	40.00	110	0	0.00	52	63	54.78
PRKDC	0	genome.wustl.edu	37	8	48701570	48701570	+	Frame_Shift_Del	DEL	G	G	-			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	8	48701570	48701570	G	-	DEL	PRKDC	ENST00000314191	human	ensembl	74_37	-1	known	frame_shift_del	c.10796	p.P3599fs	0.002	NULL	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729	tier1			65	0	0.00	32	55	63.22	63	0	0.00	35	53	60.23
PCDHA2	0	genome.wustl.edu	37	5	140175282	140175285	+	Frame_Shift_Del	DEL	TCAG	TCAG	-			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	TCAG	TCAG	TCAG	-	TCAG	TCAG	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	5	140175282	140175285	TCAG	-	DEL	PCDHA2	ENST00000526136	human	ensembl	74_37	+1	known	frame_shift_del	c.733_736	p.S245fs	0.000:0.000:0.000:0.000	superfamily_Cadherin-like,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA2	HGNC	ENSG00000204969	tier1			30	0	0.00	9	7	43.75	101	0	0.00	48	18	27.27
FBXO5	0	genome.wustl.edu	37	6	153293556	153293556	+	Frame_Shift_Del	DEL	T	T	-			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	6	153293556	153293556	T	-	DEL	FBXO5	ENST00000229758	human	ensembl	74_37	-1	known	frame_shift_del	c.943	p.T315fs	1.000	NULL	pfam_F-box_dom,superfamily_F-box_dom	-	no_errors	FBXO5	HGNC	ENSG00000112029	tier1			48	0	0.00	44	7	13.73	98	0	0.00	67	24	26.37
ZNF234	0	genome.wustl.edu	37	19	44653051	44653051	+	Splice_Site	SNP	G	G	A			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	19	44653051	44653051	G	A	SNP	ZNF234	ENST00000426739	human	ensembl	74_37	+1	known	splice_site	c.142+1	e2+1	1.000	-	-	-	no_errors	ZNF234	HGNC	ENSG00000263002	tier1	-	-	87	0	0.00	83	13	13.40	83	0	0.00	91	7	7.14
ANK1	0	genome.wustl.edu	37	8	41519417	41519417	+	Missense_Mutation	SNP	C	C	T			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	8	41519417	41519417	C	T	SNP	ANK1	ENST00000396942	human	ensembl	74_37	-1	known	missense	c.5521	p.D1841N	0.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK1	HGNC	ENSG00000029534	tier1	rs143987736	-	49	0	0.00	61	10	14.08	88	0	0.00	65	7	9.72
SEC22B	0	genome.wustl.edu	37	1	145112520	145112520	+	Splice_Site	SNP	G	G	C			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	1	145112520	145112520	G	C	SNP	SEC22B	ENST00000453618	human	ensembl	74_37	+1	known	splice_site	c.NULL	NULL	1.000	-	-	-	no_errors	SEC22B	HGNC	ENSG00000223380	tier1	-	-	176	0	0.00	175	19	9.79	284	0	0.00	294	25	7.79
CCR3	0	genome.wustl.edu	37	3	46306890	46306890	+	Silent	SNP	C	C	T			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	3	46306890	46306890	C	T	SNP	CCR3	ENST00000545097	human	ensembl	74_37	+1	known	silent	c.304	p.L102	0.999	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Chemokine_CCR3,prints_Chemokine_CCR1	-	no_errors	CCR3	HGNC	ENSG00000183625	tier1	-	-	21	0	0.00	15	3	16.67	120	0	0.00	115	5	4.17
MYOM3	0	genome.wustl.edu	37	1	24400760	24400760	+	Splice_Site	SNP	C	C	G			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	1	24400760	24400760	C	G	SNP	MYOM3	ENST00000330966	human	ensembl	74_37	-1	known	splice_site	c.2862-1	e22-1	1.000	-	-	-	no_errors	MYOM3	HGNC	ENSG00000142661	tier1	-	-	51	0	0.00	32	7	17.95	91	0	0.00	77	4	4.94
KMT2C	0	genome.wustl.edu	37	7	151874147	151874148	+	Frame_Shift_Ins	INS	-	-	T			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	7	151874147	151874148	-	T	INS	KMT2C	ENST00000355193	human	ensembl	74_37	-1	known	frame_shift_ins	c.8391_8390	p.E2798fs	0.017:0.019	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2C	HGNC	ENSG00000055609	tier1			35	0	0.00	29	4	12.12	95	0	0.00	101	4	3.81
MYH7B	0	genome.wustl.edu	37	20	33583296	33583296	+	Missense_Mutation	SNP	A	A	G			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	20	33583296	33583296	A	G	SNP	MYH7B	ENST00000262873	human	ensembl	74_37	+1	novel	missense	c.2984	p.E995G	1.000	superfamily_tR-bd_arm	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Myosin_S1_N,superfamily_Prefoldin,superfamily_tR-bd_arm,superfamily_t-SRE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7B	HGNC	ENSG00000078814	tier1	-	-	48	0	0.00	40	4	9.09	9	0	0.00	6	0	0.00
AKR7A2	0	genome.wustl.edu	37	1	19638441	19638441	+	Missense_Mutation	SNP	C	C	A			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	1	19638441	19638441	C	A	SNP	AKR7A2	ENST00000235835	human	ensembl	74_37	-1	known	missense	c.178	p.V60L	0.994	pfam_DP_OxRdtase_dom,superfamily_DP_OxRdtase_dom	pfam_DP_OxRdtase_dom,superfamily_DP_OxRdtase_dom	-	no_errors	AKR7A2	HGNC	ENSG00000053371	tier1	-	-	12	0	0.00	9	4	30.77	0	0	0.00	2	0	0.00
DNM1P46	0	genome.wustl.edu	37	15	100340186	100340186	+	R	SNP	C	C	A			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	15	100340186	100340186	C	A	SNP	DNM1P46	ENST00000341853	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.981	-	-	-	no_errors	DNM1P46	HGNC	ENSG00000182397	tier1	rs200975818	-	29	0	0.00	18	5	21.74	0	0	0.00	0	0	0.00
ENSG00000216191	0	genome.wustl.edu	37	2	50923314	50923319	+	R	DEL	GTGTGT	GTGTGT	-			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	GTGTGT	GTGTGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	2	50923314	50923319	GTGTGT	-	DEL	ENSG00000216191	ENST00000401372	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.006:0.004:0.003:0.002:0.002:0.000	-	-	-	no_errors	AC009234.2	Clone_based_ensembl_gene	ENSG00000216191	tier1			0	0	0.00	0	0	0.00	0	0	0.00	0	0	0.00
ENSG00000221280	0	genome.wustl.edu	37	12	118604619	118604619	+	R	SNP	G	G	A			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	12	118604619	118604619	G	A	SNP	ENSG00000221280	ENST00000408353	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors	AC026366.1	Clone_based_ensembl_gene	ENSG00000221280	tier1	-	-	29	0	0.00	22	5	18.52	0	0	0.00	0	0	0.00
ENSG00000260411	0	genome.wustl.edu	37	16	5290016	5290016	+	R	SNP	C	C	G			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	16	5290016	5290016	C	G	SNP	ENSG00000260411	ENST00000569895	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	RP11-420N3.2	Clone_based_vega_gene	ENSG00000260411	tier1	-	-	21	0	0.00	19	7	26.92	0	0	0.00	0	0	0.00
FER1L4	0	genome.wustl.edu	37	20	34171885	34171885	+	R	SNP	A	A	G			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	20	34171885	34171885	A	G	SNP	FER1L4	ENST00000430275	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.482	-	-	-	no_errors	FER1L4	HGNC	ENSG00000088340	tier1	-	-	47	0	0.00	34	7	17.07	4	0	0.00	7	1	12.50
KRTAP10-9	0	genome.wustl.edu	37	21	46048138	46048138	+	R	SNP	C	C	G			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	21	46048138	46048138	C	G	SNP	KRTAP10-9	ENST00000484861	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	KRTAP10-9	HGNC	ENSG00000221837	tier1	rs112351109	-	55	0	0.00	28	5	15.15	1	0	0.00	4	0	0.00
KRTAP4-7	0	genome.wustl.edu	37	17	39240828	39240828	+	Missense_Mutation	SNP	G	G	A			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	17	39240828	39240828	G	A	SNP	KRTAP4-7	ENST00000391417	human	ensembl	74_37	+1	known	missense	c.370	p.V124I	0.993	NULL	pfam_Keratin-assoc	-	no_errors	KRTAP4-7	HGNC	ENSG00000240871	tier1	-	-	104	0	0.00	28	37	56.06	3	0	0.00	3	0	0.00
RPS26	0	genome.wustl.edu	37	12	56436288	56436288	+	Missense_Mutation	SNP	G	G	T			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	12	56436288	56436288	G	T	SNP	RPS26	ENST00000356464	human	ensembl	74_37	+1	known	missense	c.83	p.R28L	1.000	pfam_Ribosomal_S26e	pfam_Ribosomal_S26e	-	no_errors	RPS26	HGNC	ENSG00000197728	tier1	-	-	70	0	0.00	74	11	12.79	0	0	0.00	0	0	0.00
RASA3	0	genome.wustl.edu	37	13	114762103	114762103	+	Missense_Mutation	SNP	C	C	T			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	13	114762103	114762103	C	T	SNP	RASA3	ENST00000334062	human	ensembl	74_37	-1	known	missense	c.2045	p.R682H	1.000	smart_Znf_Btk_motif,pfscan_Znf_Btk_motif,prints_Znf_Btk_motif	pfam_RasGAP,pfam_C2_dom,pfam_Znf_Btk_motif,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_C2_dom,smart_RasGAP,smart_Pleckstrin_homology,smart_Znf_Btk_motif,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_Znf_Btk_motif,pfscan_RasGAP,prints_Znf_Btk_motif	-	no_errors	RASA3	HGNC	ENSG00000185989	tier1	-	-	44	0	0.00	38	11	22.45	74	0	0.00	51	3	5.56
SYNDIG1L	0	genome.wustl.edu	37	14	74876371	74876371	+	Missense_Mutation	SNP	G	G	A			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	14	74876371	74876371	G	A	SNP	SYNDIG1L	ENST00000331628	human	ensembl	74_37	-1	known	missense	c.77	p.P26L	0.047	NULL	pfam_CD225/Dispanin_fam	-	no_errors	SYNDIG1L	HGNC	ENSG00000183379	tier1	-	-	36	0	0.00	54	11	16.92	40	0	0.00	50	3	5.56
SLC6A19	0	genome.wustl.edu	37	5	1217031	1217031	+	Missense_Mutation	SNP	A	A	G			TCGA-QQ-A5VB-01A-11D-A36J-09	TCGA-QQ-A5VB-11B-11D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d400acc7-dfdd-43c8-87ba-7fa730843de4	48693237-2b03-410f-8ac9-7d5ca5a4edb1	5	1217031	1217031	A	G	SNP	SLC6A19	ENST00000304460	human	ensembl	74_37	+1	known	missense	c.1144	p.T382A	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_orphan	-	no_errors	SLC6A19	HGNC	ENSG00000174358	tier1	-	-	37	0	0.00	43	4	8.51	25	0	0.00	33	2	5.71
