Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
DUSP1	0	genome.wustl.edu	37	5	172195870	172195870	+	Silent	SNP	G	G	A			TCGA-SI-A71P-01A-12D-A33E-09	TCGA-SI-A71P-10A-01D-A33H-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	666434c3-057c-46d5-875f-5243314915c1	a4b6f436-9bf6-4964-a64b-b792e75e0697	5	172195870	172195870	G	A	SNP	DUSP1	ENST00000239223	human	ensembl	74_37	-1	known	silent	c.999	p.T333	0.773	pirsf_MKP	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,smart_Tyr_Pase_cat,pirsf_MKP,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP,prints_Atypical_DUSP	-	no_errors	DUSP1	HGNC	ENSG00000120129	tier1	-	-	78	0	0.00	33	6	15.38	100	0	0.00	82	12	12.77
SCAND3	0	genome.wustl.edu	37	6	28540383	28540383	+	Missense_Mutation	SNP	C	C	A			TCGA-SI-A71P-01A-12D-A33E-09	TCGA-SI-A71P-10A-01D-A33H-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	666434c3-057c-46d5-875f-5243314915c1	a4b6f436-9bf6-4964-a64b-b792e75e0697	6	28540383	28540383	C	A	SNP	SCAND3	ENST00000452236	human	ensembl	74_37	-1	known	missense	c.3283	p.D1095Y	1.000	superfamily_RNaseH-like_dom	pfam_Tscrpt_reg_SCAN,pfam_Integrase_cat-core,pfam_HATC_dom_C,superfamily_Retrov_capsid_C,superfamily_RNaseH-like_dom,smart_Tscrpt_reg_SCAN,pfscan_Integrase_cat-core,pfscan_Tscrpt_reg_SCAN	-	no_errors	SCAND3	HGNC	ENSG00000232040	tier1	-	-	62	0	0.00	44	7	13.73	100	1	0.99	58	16	21.62
MYH9	0	genome.wustl.edu	37	22	36688042	36688042	+	Missense_Mutation	SNP	T	T	G			TCGA-SI-A71P-01A-12D-A33E-09	TCGA-SI-A71P-10A-01D-A33H-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	666434c3-057c-46d5-875f-5243314915c1	a4b6f436-9bf6-4964-a64b-b792e75e0697	22	36688042	36688042	T	G	SNP	MYH9	ENST00000216181	human	ensembl	74_37	-1	known	missense	c.4334	p.K1445T	1.000	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tR-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH9	HGNC	ENSG00000100345	tier1	-	-	67	0	0.00	28	13	31.71	80	0	0.00	50	16	24.24
PTTG1IP	0	genome.wustl.edu	37	21	46276197	46276197	+	Silent	SNP	G	G	A			TCGA-SI-A71P-01A-12D-A33E-09	TCGA-SI-A71P-10A-01D-A33H-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	666434c3-057c-46d5-875f-5243314915c1	a4b6f436-9bf6-4964-a64b-b792e75e0697	21	46276197	46276197	G	A	SNP	PTTG1IP	ENST00000330938	human	ensembl	74_37	-1	known	silent	c.360	p.C120	1.000	NULL	smart_Plexin-like_fold	-	no_errors	PTTG1IP	HGNC	ENSG00000183255	tier1	-	-	107	0	0.00	77	9	10.34	67	0	0.00	36	6	14.29
ZNF407	0	genome.wustl.edu	37	18	72346148	72346148	+	Missense_Mutation	SNP	G	G	A			TCGA-SI-A71P-01A-12D-A33E-09	TCGA-SI-A71P-10A-01D-A33H-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	666434c3-057c-46d5-875f-5243314915c1	a4b6f436-9bf6-4964-a64b-b792e75e0697	18	72346148	72346148	G	A	SNP	ZNF407	ENST00000299687	human	ensembl	74_37	+1	known	missense	c.3173	p.R1058H	0.994	smart_Znf_C2H2-like,smart_Znf_U1	pfam_Znf_C2H2,smart_Znf_C2H2-like,smart_Znf_U1,pfscan_Znf_C2H2	-	no_errors	ZNF407	HGNC	ENSG00000215421	tier1	-	-	22	0	0.00	21	12	36.36	125	0	0.00	67	21	23.86
SLC22A8	0	genome.wustl.edu	37	11	62782355	62782355	+	Missense_Mutation	SNP	G	G	A			TCGA-SI-A71P-01A-12D-A33E-09	TCGA-SI-A71P-10A-01D-A33H-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	666434c3-057c-46d5-875f-5243314915c1	a4b6f436-9bf6-4964-a64b-b792e75e0697	11	62782355	62782355	G	A	SNP	SLC22A8	ENST00000336232	human	ensembl	74_37	-1	known	missense	c.76	p.L26F	0.008	tigrfam_Orgcat_transp	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A8	HGNC	ENSG00000149452	tier1	-	-	80	0	0.00	54	10	15.38	104	0	0.00	69	10	12.66
ST18	0	genome.wustl.edu	37	8	53084453	53084453	+	Missense_Mutation	SNP	G	G	A			TCGA-SI-A71P-01A-12D-A33E-09	TCGA-SI-A71P-10A-01D-A33H-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	666434c3-057c-46d5-875f-5243314915c1	a4b6f436-9bf6-4964-a64b-b792e75e0697	8	53084453	53084453	G	A	SNP	ST18	ENST00000276480	human	ensembl	74_37	-1	known	missense	c.968	p.T323I	1.000	NULL	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	ST18	HGNC	ENSG00000147488	tier1	-	-	95	0	0.00	47	5	9.62	112	0	0.00	85	10	10.53
NLRP12	0	genome.wustl.edu	37	19	54313886	54313886	+	Missense_Mutation	SNP	G	G	A			TCGA-SI-A71P-01A-12D-A33E-09	TCGA-SI-A71P-10A-01D-A33H-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	666434c3-057c-46d5-875f-5243314915c1	a4b6f436-9bf6-4964-a64b-b792e75e0697	19	54313886	54313886	G	A	SNP	NLRP12	ENST00000324134	human	ensembl	74_37	-1	known	missense	c.1027	p.R343W	0.375	superfamily_P-loop_NTPase,pfscan_CHT_NTPase	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_CHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP12	HGNC	ENSG00000142405	tier1	rs112159191	-	46	0	0.00	19	7	26.92	82	0	0.00	85	14	14.14
LONRF2	0	genome.wustl.edu	37	2	100915748	100915748	+	Missense_Mutation	SNP	G	G	A			TCGA-SI-A71P-01A-12D-A33E-09	TCGA-SI-A71P-10A-01D-A33H-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	666434c3-057c-46d5-875f-5243314915c1	a4b6f436-9bf6-4964-a64b-b792e75e0697	2	100915748	100915748	G	A	SNP	LONRF2	ENST00000393437	human	ensembl	74_37	-1	known	missense	c.1301	p.T434I	0.000	NULL	pfam_Pept_S16_N,pfam_Znf_C3HC4_RING-type,superfamily_PUA-like_domain,smart_Znf_RING,smart_TPR_repeat,smart_Pept_S16_N,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	LONRF2	HGNC	ENSG00000170500	tier1	-	-	71	0	0.00	63	14	17.95	99	0	0.00	62	16	20.51
ATIC	0	genome.wustl.edu	37	2	216197214	216197214	+	Silent	SNP	A	A	G			TCGA-SI-A71P-01A-12D-A33E-09	TCGA-SI-A71P-10A-01D-A33H-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	666434c3-057c-46d5-875f-5243314915c1	a4b6f436-9bf6-4964-a64b-b792e75e0697	2	216197214	216197214	A	G	SNP	ATIC	ENST00000236959	human	ensembl	74_37	+1	known	silent	c.798	p.K266	0.985	pfam_AICARFT_IMPCHas,superfamily_Cytidine_deaminase-like,smart_AICARFT_IMPCHas,pirsf_AICARFT_IMPCHas,tigrfam_AICARFT_IMPCHas	pfam_AICARFT_IMPCHas,pfam_MGS-like_dom,superfamily_Cytidine_deaminase-like,superfamily_MGS-like_dom,smart_MGS-like_dom,smart_AICARFT_IMPCHas,pirsf_AICARFT_IMPCHas,tigrfam_AICARFT_IMPCHas	-	no_errors	ATIC	HGNC	ENSG00000138363	tier1	-	-	56	0	0.00	60	7	10.45	123	0	0.00	102	27	20.93
CXXC1	0	genome.wustl.edu	37	18	47810148	47810148	+	Missense_Mutation	SNP	A	A	T			TCGA-SI-A71P-01A-12D-A33E-09	TCGA-SI-A71P-10A-01D-A33H-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	666434c3-057c-46d5-875f-5243314915c1	a4b6f436-9bf6-4964-a64b-b792e75e0697	18	47810148	47810148	A	T	SNP	CXXC1	ENST00000412036	human	ensembl	74_37	-1	known	missense	c.1463	p.I488N	1.000	pfam_CpG-bd_C	pfam_CpG-bd_C,pfam_Znf_CXXC,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	CXXC1	HGNC	ENSG00000154832	tier1	-	-	60	0	0.00	34	6	15.00	116	0	0.00	88	13	12.75
SIN3A	0	genome.wustl.edu	37	15	75684814	75684814	+	Missense_Mutation	SNP	G	G	C			TCGA-SI-A71P-01A-12D-A33E-09	TCGA-SI-A71P-10A-01D-A33H-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	666434c3-057c-46d5-875f-5243314915c1	a4b6f436-9bf6-4964-a64b-b792e75e0697	15	75684814	75684814	G	C	SNP	SIN3A	ENST00000360439	human	ensembl	74_37	-1	known	missense	c.2620	p.Q874E	1.000	NULL	pfam_PAH,pfam_HDAC_interact,superfamily_PAH,smart_HDAC_interact	-	no_errors	SIN3A	HGNC	ENSG00000169375	tier1	-	-	56	0	0.00	57	21	26.92	105	1	0.94	95	19	16.67
ARL6	0	genome.wustl.edu	37	3	97487021	97487021	+	Missense_Mutation	SNP	G	G	A			TCGA-SI-A71P-01A-12D-A33E-09	TCGA-SI-A71P-10A-01D-A33H-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	666434c3-057c-46d5-875f-5243314915c1	a4b6f436-9bf6-4964-a64b-b792e75e0697	3	97487021	97487021	G	A	SNP	ARL6	ENST00000335979	human	ensembl	74_37	+1	known	missense	c.70	p.G24R	1.000	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,pfam_Gtr1_RagA,pfam_MIRO-like,superfamily_P-loop_NTPase,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,prints_Small_GTPase_ARF/SAR,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,pfam_Gprotein_alpha_su,pfam_Gtr1_RagA,pfam_MIRO-like,superfamily_P-loop_NTPase,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,prints_Small_GTPase_ARF/SAR,tigrfam_Small_GTP-bd_dom	-	no_errors	ARL6	HGNC	ENSG00000113966	tier1	-	-	89	0	0.00	51	7	12.07	184	0	0.00	134	16	10.67
TFEC	0	genome.wustl.edu	37	7	115750938	115750938	+	Missense_Mutation	SNP	G	G	A			TCGA-SI-A71P-01A-12D-A33E-09	TCGA-SI-A71P-10A-01D-A33H-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	666434c3-057c-46d5-875f-5243314915c1	a4b6f436-9bf6-4964-a64b-b792e75e0697	7	115750938	115750938	G	A	SNP	TFEC	ENST00000484212	human	ensembl	74_37	-1	novel	missense	c.22	p.L8F	0.373	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	TFEC	HGNC	ENSG00000105967	tier1	-	-	50	0	0.00	59	6	9.23	112	0	0.00	75	9	10.71
RYR3	0	genome.wustl.edu	37	15	33954925	33954925	+	Silent	SNP	C	C	T			TCGA-SI-A71P-01A-12D-A33E-09	TCGA-SI-A71P-10A-01D-A33H-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	666434c3-057c-46d5-875f-5243314915c1	a4b6f436-9bf6-4964-a64b-b792e75e0697	15	33954925	33954925	C	T	SNP	RYR3	ENST00000389232	human	ensembl	74_37	+1	known	silent	c.5194	p.L1732	0.543	NULL	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	tier1	-	-	98	0	0.00	52	21	28.77	119	0	0.00	92	23	20.00
QKI	0	genome.wustl.edu	37	6	163984490	163984490	+	Missense_Mutation	SNP	G	G	C			TCGA-SI-A71P-01A-12D-A33E-09	TCGA-SI-A71P-10A-01D-A33H-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	666434c3-057c-46d5-875f-5243314915c1	a4b6f436-9bf6-4964-a64b-b792e75e0697	6	163984490	163984490	G	C	SNP	QKI	ENST00000361752	human	ensembl	74_37	+1	known	missense	c.673	p.A225P	1.000	NULL	pfam_KH_dom_type_1,smart_KH_dom	-	no_errors	QKI	HGNC	ENSG00000112531	tier1	-	-	29	0	0.00	34	10	22.73	45	0	0.00	24	11	31.43
CERS2	0	genome.wustl.edu	37	1	150940932	150940932	+	Missense_Mutation	SNP	C	C	T			TCGA-SI-A71P-01A-12D-A33E-09	TCGA-SI-A71P-10A-01D-A33H-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	666434c3-057c-46d5-875f-5243314915c1	a4b6f436-9bf6-4964-a64b-b792e75e0697	1	150940932	150940932	C	T	SNP	CERS2	ENST00000271688	human	ensembl	74_37	-1	known	missense	c.230	p.R77Q	1.000	superfamily_Homeodomain-like,pirsf_Longevity_assurance_LAG1_LAC1,pfscan_Homeobox_dom	pfam_TLC-dom,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_TLC-dom,pirsf_Longevity_assurance_LAG1_LAC1,pfscan_TLC-dom,pfscan_Homeobox_dom	-	no_errors	CERS2	HGNC	ENSG00000143418	tier1	-	-	133	0	0.00	94	15	13.76	140	0	0.00	112	15	11.72
WWC2	0	genome.wustl.edu	37	4	184202086	184202086	+	Missense_Mutation	SNP	A	A	G			TCGA-SI-A71P-01A-12D-A33E-09	TCGA-SI-A71P-10A-01D-A33H-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	666434c3-057c-46d5-875f-5243314915c1	a4b6f436-9bf6-4964-a64b-b792e75e0697	4	184202086	184202086	A	G	SNP	WWC2	ENST00000448232	human	ensembl	74_37	+1	known	missense	c.2720	p.K907R	0.000	NULL	pfam_WW_dom,superfamily_C2_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	WWC2	HGNC	ENSG00000151718	tier1	-	-	42	0	0.00	34	16	32.00	181	1	0.55	124	21	14.48
ZNF133	0	genome.wustl.edu	37	20	18296306	18296306	+	Missense_Mutation	SNP	G	G	A			TCGA-SI-A71P-01A-12D-A33E-09	TCGA-SI-A71P-10A-01D-A33H-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	666434c3-057c-46d5-875f-5243314915c1	a4b6f436-9bf6-4964-a64b-b792e75e0697	20	18296306	18296306	G	A	SNP	ZNF133	ENST00000396026	human	ensembl	74_37	+1	known	missense	c.820	p.V274M	0.891	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF133	HGNC	ENSG00000125846	tier1	-	-	58	0	0.00	50	17	25.37	125	0	0.00	71	19	20.88
FBXO41	0	genome.wustl.edu	37	2	73486154	73486154	+	Missense_Mutation	SNP	C	C	T			TCGA-SI-A71P-01A-12D-A33E-09	TCGA-SI-A71P-10A-01D-A33H-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	666434c3-057c-46d5-875f-5243314915c1	a4b6f436-9bf6-4964-a64b-b792e75e0697	2	73486154	73486154	C	T	SNP	FBXO41	ENST00000295133	human	ensembl	74_37	-1	known	missense	c.2767	p.G923S	1.000	NULL	superfamily_F-box_dom	-	no_errors	FBXO41	HGNC	ENSG00000163013	tier1	-	-	92	0	0.00	57	7	10.94	63	0	0.00	37	6	13.95
LOC101928787	0	genome.wustl.edu	37	17	18857121	18857121	+	R	SNP	G	G	C			TCGA-SI-A71P-01A-12D-A33E-09	TCGA-SI-A71P-10A-01D-A33H-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	666434c3-057c-46d5-875f-5243314915c1	a4b6f436-9bf6-4964-a64b-b792e75e0697	17	18857121	18857121	G	C	SNP	LOC101928787	ENST00000354432	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	AC090286.4	Clone_based_vega_gene	ENSG00000196893	tier1	-	-	78	0	0.00	52	11	17.46	141	0	0.00	111	32	22.38
NF1	0	genome.wustl.edu	37	17	29541587	29541588	+	Frame_Shift_Ins	INS	-	-	A			TCGA-SI-A71P-01A-12D-A33E-09	TCGA-SI-A71P-10A-01D-A33H-09	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	666434c3-057c-46d5-875f-5243314915c1	a4b6f436-9bf6-4964-a64b-b792e75e0697	17	29541587	29541588	-	A	INS	NF1	ENST00000358273	human	ensembl	74_37	+1	known	frame_shift_ins	c.1511_1512	p.L506fs	1.000:0.999	superfamily_ARM-type_fold	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	-	no_errors	NF1	HGNC	ENSG00000196712	tier1			156	0	0.00	175	40	18.60	29	0	0.00	16	10	38.46
MTRNR2L6	0	genome.wustl.edu	37	7	142375121	142375121	+	Missense_Mutation	SNP	T	T	C			TCGA-SI-A71P-01A-12D-A33E-09	TCGA-SI-A71P-10A-01D-A33H-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	666434c3-057c-46d5-875f-5243314915c1	a4b6f436-9bf6-4964-a64b-b792e75e0697	7	142375121	142375121	T	C	SNP	MTRNR2L6	ENST00000604952	human	ensembl	74_37	+1	known	missense	c.59	p.V20A	1.000	NULL	NULL	-	no_errors	MTRNR2L6	HGNC	ENSG00000270672	tier1	-	-	61	0	0.00	53	16	23.19	12	0	0.00	6	5	45.45
FAM208B	0	genome.wustl.edu	37	10	5788196	5788196	+	Missense_Mutation	SNP	T	T	C			TCGA-SI-A71P-01A-12D-A33E-09	TCGA-SI-A71P-10A-01D-A33H-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	666434c3-057c-46d5-875f-5243314915c1	a4b6f436-9bf6-4964-a64b-b792e75e0697	10	5788196	5788196	T	C	SNP	FAM208B	ENST00000328090	human	ensembl	74_37	+1	known	missense	c.2812	p.S938P	0.962	pfam_DUF3715	pfam_DUF3715,pfam_DUF3699	-	no_errors	FAM208B	HGNC	ENSG00000108021	tier1	-	-	174	0	0.00	101	17	14.29	135	0	0.00	66	6	8.33
NCOR1	0	genome.wustl.edu	37	17	16049780	16049780	+	Missense_Mutation	SNP	C	C	T			TCGA-SI-A71P-01A-12D-A33E-09	TCGA-SI-A71P-10A-01D-A33H-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	666434c3-057c-46d5-875f-5243314915c1	a4b6f436-9bf6-4964-a64b-b792e75e0697	17	16049780	16049780	C	T	SNP	NCOR1	ENST00000268712	human	ensembl	74_37	-1	known	missense	c.992	p.R331K	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027	tier1	-	-	86	0	0.00	51	8	13.56	90	0	0.00	79	8	9.20
C2orf71	0	genome.wustl.edu	37	2	29295870	29295870	+	Missense_Mutation	SNP	C	C	A			TCGA-SI-A71P-01A-12D-A33E-09	TCGA-SI-A71P-10A-01D-A33H-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	666434c3-057c-46d5-875f-5243314915c1	a4b6f436-9bf6-4964-a64b-b792e75e0697	2	29295870	29295870	C	A	SNP	C2orf71	ENST00000331664	human	ensembl	74_37	-1	known	missense	c.1258	p.A420S	0.004	NULL	NULL	-	no_errors	C2orf71	HGNC	ENSG00000179270	tier1	-	-	81	0	0.00	44	14	23.73	102	0	0.00	84	5	5.62
LCN2	0	genome.wustl.edu	37	9	130913979	130913979	+	Missense_Mutation	SNP	C	C	T			TCGA-SI-A71P-01A-12D-A33E-09	TCGA-SI-A71P-10A-01D-A33H-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	666434c3-057c-46d5-875f-5243314915c1	a4b6f436-9bf6-4964-a64b-b792e75e0697	9	130913979	130913979	C	T	SNP	LCN2	ENST00000372998	human	ensembl	74_37	+1	known	missense	c.344	p.T115M	0.000	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_N_gelatinase	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_N_gelatinase,prints_PstgldnD_synth,prints_Lipocalin,prints_A1-microglobln	-	no_errors	LCN2	HGNC	ENSG00000148346	tier1	rs150975968	GMAF=0.0005	119	0	0.00	41	9	18.00	92	0	0.00	70	4	5.41
TKT	0	genome.wustl.edu	37	3	53274298	53274298	+	Missense_Mutation	SNP	C	C	G			TCGA-SI-A71P-01A-12D-A33E-09	TCGA-SI-A71P-10A-01D-A33H-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	666434c3-057c-46d5-875f-5243314915c1	a4b6f436-9bf6-4964-a64b-b792e75e0697	3	53274298	53274298	C	G	SNP	TKT	ENST00000423525	human	ensembl	74_37	-1	known	missense	c.406	p.A136P	1.000	pfam_Transketolase_N,pfam_DH_E1	pfam_Transketolase_N,pfam_Transketolase-like_Pyr-bd,pfam_Transketolase_C,pfam_DH_E1,superfamily_Transketo_C/Pyr-ferredox_oxred,smart_Transketolase-like_Pyr-bd	-	no_errors	TKT	HGNC	ENSG00000163931	tier1	-	-	119	0	0.00	66	16	19.51	79	0	0.00	58	5	7.94
APOBR	0	genome.wustl.edu	37	16	28507458	28507458	+	Missense_Mutation	SNP	G	G	A			TCGA-SI-A71P-01A-12D-A33E-09	TCGA-SI-A71P-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	666434c3-057c-46d5-875f-5243314915c1	a4b6f436-9bf6-4964-a64b-b792e75e0697	16	28507458	28507458	G	A	SNP	APOBR	ENST00000564831	human	ensembl	74_37	+1	known	missense	c.1096	p.A366T	0.002	NULL	NULL	-	no_errors	APOBR	HGNC	ENSG00000184730	tier1	-	-	46	0	0.00	33	7	17.50	14	0	0.00	5	0	0.00
KIF1C	0	genome.wustl.edu	37	17	4925906	4925906	+	Missense_Mutation	SNP	C	C	A			TCGA-SI-A71P-01A-12D-A33E-09	TCGA-SI-A71P-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	666434c3-057c-46d5-875f-5243314915c1	a4b6f436-9bf6-4964-a64b-b792e75e0697	17	4925906	4925906	C	A	SNP	KIF1C	ENST00000320785	human	ensembl	74_37	+1	known	missense	c.2530	p.L844M	1.000	NULL	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1C	HGNC	ENSG00000129250	tier1	-	-	45	0	0.00	24	4	14.29	12	0	0.00	8	0	0.00
ODF3	0	genome.wustl.edu	37	11	197587	197587	+	Missense_Mutation	SNP	C	C	A			TCGA-SI-A71P-01A-12D-A33E-09	TCGA-SI-A71P-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	666434c3-057c-46d5-875f-5243314915c1	a4b6f436-9bf6-4964-a64b-b792e75e0697	11	197587	197587	C	A	SNP	ODF3	ENST00000325113	human	ensembl	74_37	+1	known	missense	c.136	p.L46M	0.569	NULL	pfam_SHIPPO-rpt	-	no_errors	ODF3	HGNC	ENSG00000177947	tier1	-	-	84	0	0.00	39	4	9.30	26	0	0.00	8	0	0.00
DNM1P47	0	genome.wustl.edu	37	15	102300044	102300044	+	R	SNP	C	C	G			TCGA-SI-A71P-01A-12D-A33E-09	TCGA-SI-A71P-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	666434c3-057c-46d5-875f-5243314915c1	a4b6f436-9bf6-4964-a64b-b792e75e0697	15	102300044	102300044	C	G	SNP	DNM1P47	ENST00000561463	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DNM1P47	HGNC	ENSG00000259660	tier1	-	-	49	0	0.00	27	3	10.00	0	0	0.00	0	0	0.00
KRTAP2-2	0	genome.wustl.edu	37	17	39211139	39211140	+	In_Frame_Ins	INS	-	-	GCAGGGGGGCCGGCA			TCGA-SI-A71P-01A-12D-A33E-09	TCGA-SI-A71P-10A-01D-A33H-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	666434c3-057c-46d5-875f-5243314915c1	a4b6f436-9bf6-4964-a64b-b792e75e0697	17	39211139	39211140	-	GCAGGGGGGCCGGCA	INS	KRTAP2-2	ENST00000542910	human	ensembl	74_37	-1	known	in_frame_ins	c.325_324	p.108in_frame_insCRPPC	1.000:1.000	NULL	pfam_Keratin-assoc	-	no_errors	KRTAP2-2	HGNC	ENSG00000214518	tier1			0	0	0.00	0	0	0.00	0	0	0.00	0	0	0.00
LOC100131347	0	genome.wustl.edu	37	17	37213382	37213382	+	R	SNP	G	G	T			TCGA-SI-A71P-01A-12D-A33E-09	TCGA-SI-A71P-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	666434c3-057c-46d5-875f-5243314915c1	a4b6f436-9bf6-4964-a64b-b792e75e0697	17	37213382	37213382	G	T	SNP	LOC100131347	ENST00000578423	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.986	-	-	-	no_errors	CTD-2206N4.4	Clone_based_vega_gene	ENSG00000263818	tier1	-	-	66	0	0.00	45	4	8.16	0	0	0.00	0	0	0.00
MT-RNR1	0	genome.wustl.edu	37	MT	965	965	+	R	SNP	C	C	A			TCGA-SI-A71P-01A-12D-A33E-09	TCGA-SI-A71P-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	666434c3-057c-46d5-875f-5243314915c1	a4b6f436-9bf6-4964-a64b-b792e75e0697	MT	965	965	C	A	SNP	MT-RNR1	ENST00000389680	human	ensembl	74_37	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors	MT-RNR1	HGNC	ENSG00000211459	tier1	-	-	59	0	0.00	18	2	10.00	1	0	0.00	0	0	0.00
DRC1	0	genome.wustl.edu	37	2	26624902	26624902	+	Missense_Mutation	SNP	C	C	G			TCGA-SI-A71P-01A-12D-A33E-09	TCGA-SI-A71P-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	666434c3-057c-46d5-875f-5243314915c1	a4b6f436-9bf6-4964-a64b-b792e75e0697	2	26624902	26624902	C	G	SNP	DRC1	ENST00000288710	human	ensembl	74_37	+1	known	missense	c.45	p.D15E	0.356	NULL	NULL	-	no_errors	DRC1	HGNC	ENSG00000157856	tier1	-	-	249	0	0.00	178	16	8.21	59	0	0.00	46	3	6.12
DCAF5	0	genome.wustl.edu	37	14	69521851	69521851	+	Missense_Mutation	SNP	G	G	C			TCGA-SI-A71P-01A-12D-A33E-09	TCGA-SI-A71P-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	666434c3-057c-46d5-875f-5243314915c1	a4b6f436-9bf6-4964-a64b-b792e75e0697	14	69521851	69521851	G	C	SNP	DCAF5	ENST00000341516	human	ensembl	74_37	-1	known	missense	c.1552	p.R518G	0.999	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF5	HGNC	ENSG00000139990	tier1	-	-	38	0	0.00	31	4	11.43	58	0	0.00	34	3	8.11
