Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
F8	0	genome.wustl.edu	37	X	154124375	154124375	+	Missense_Mutation	SNP	C	C	T			TCGA-SI-AA8B-01A-11D-A387-09	TCGA-SI-AA8B-10A-01D-A38A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4e8ac125-c26a-4677-9ddb-c0b6c8fa4ddb	47631d66-5a15-4dbc-a27c-c9505a24e1a8	X	154124375	154124375	C	T	SNP	F8	ENST00000360256	human	ensembl	74_37	-1	known	missense	c.6406	p.G2136R	1.000	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F8	HGNC	ENSG00000185010	tier1	-	-	101	0	0.00	104	20	16.13	108	0	0.00	90	19	17.43
TAF1	0	genome.wustl.edu	37	X	70598812	70598812	+	Missense_Mutation	SNP	C	C	T			TCGA-SI-AA8B-01A-11D-A387-09	TCGA-SI-AA8B-10A-01D-A38A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4e8ac125-c26a-4677-9ddb-c0b6c8fa4ddb	47631d66-5a15-4dbc-a27c-c9505a24e1a8	X	70598812	70598812	C	T	SNP	TAF1	ENST00000449580	human	ensembl	74_37	+1	known	missense	c.1288	p.R430C	1.000	pirsf_TAF1_animal	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1	HGNC	ENSG00000147133	tier1	-	-	60	0	0.00	52	27	34.18	17	0	0.00	21	6	22.22
C15orf52	0	genome.wustl.edu	37	15	40630782	40630782	+	Missense_Mutation	SNP	C	C	T			TCGA-SI-AA8B-01A-11D-A387-09	TCGA-SI-AA8B-10A-01D-A38A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4e8ac125-c26a-4677-9ddb-c0b6c8fa4ddb	47631d66-5a15-4dbc-a27c-c9505a24e1a8	15	40630782	40630782	C	T	SNP	C15orf52	ENST00000559313	human	ensembl	74_37	-1	known	missense	c.599	p.R200Q	0.000	NULL	NULL	-	no_errors	C15orf52	HGNC	ENSG00000188549	tier1	-	-	87	0	0.00	94	42	30.88	42	0	0.00	26	13	33.33
BAP1	0	genome.wustl.edu	37	3	52438591	52438591	+	Silent	SNP	G	G	A			TCGA-SI-AA8B-01A-11D-A387-09	TCGA-SI-AA8B-10A-01D-A38A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4e8ac125-c26a-4677-9ddb-c0b6c8fa4ddb	47631d66-5a15-4dbc-a27c-c9505a24e1a8	3	52438591	52438591	G	A	SNP	BAP1	ENST00000460680	human	ensembl	74_37	-1	known	silent	c.1128	p.D376	1.000	NULL	pfam_Peptidase_C12,prints_Peptidase_C12	-	no_errors	BAP1	HGNC	ENSG00000163930	tier1	-	-	52	0	0.00	51	16	23.88	29	0	0.00	20	7	25.93
WHSC1	0	genome.wustl.edu	37	4	1918632	1918632	+	Silent	SNP	G	G	A			TCGA-SI-AA8B-01A-11D-A387-09	TCGA-SI-AA8B-10A-01D-A38A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4e8ac125-c26a-4677-9ddb-c0b6c8fa4ddb	47631d66-5a15-4dbc-a27c-c9505a24e1a8	4	1918632	1918632	G	A	SNP	WHSC1	ENST00000382891	human	ensembl	74_37	+1	known	silent	c.795	p.Q265	1.000	pfam_PWWP_dom,smart_PWWP_dom,pfscan_PWWP_dom	pfam_PWWP_dom,pfam_SET_dom,pfam_Znf_PHD-finger,pfam_HMG_box_dom,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_PWWP_dom,smart_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_HMG_box_dom	-	no_errors	WHSC1	HGNC	ENSG00000109685	tier1	-	-	80	0	0.00	50	62	55.36	84	0	0.00	57	59	50.86
OR52M1	0	genome.wustl.edu	37	11	4566606	4566606	+	Nonsense_Mutation	SNP	C	C	G			TCGA-SI-AA8B-01A-11D-A387-09	TCGA-SI-AA8B-10A-01D-A38A-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4e8ac125-c26a-4677-9ddb-c0b6c8fa4ddb	47631d66-5a15-4dbc-a27c-c9505a24e1a8	11	4566606	4566606	C	G	SNP	OR52M1	ENST00000360213	human	ensembl	74_37	+1	known	nonsense	c.186	p.Y62*	0.685	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52M1	HGNC	ENSG00000197790	tier1	-	-	66	0	0.00	91	20	18.02	85	0	0.00	60	9	12.86
TRIM9	0	genome.wustl.edu	37	14	51452697	51452697	+	Missense_Mutation	SNP	G	G	C			TCGA-SI-AA8B-01A-11D-A387-09	TCGA-SI-AA8B-10A-01D-A38A-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4e8ac125-c26a-4677-9ddb-c0b6c8fa4ddb	47631d66-5a15-4dbc-a27c-c9505a24e1a8	14	51452697	51452697	G	C	SNP	TRIM9	ENST00000338969	human	ensembl	74_37	-1	known	missense	c.1757	p.S586C	1.000	superfamily_ConA-like_lec_gl_sf	pfam_SPRY_rcpt,pfam_Fibronectin_type3,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM9	HGNC	ENSG00000100505	tier1	-	-	69	0	0.00	51	17	25.00	86	0	0.00	54	16	22.86
CAC1A	0	genome.wustl.edu	37	19	13410062	13410062	+	Silent	SNP	G	G	A			TCGA-SI-AA8B-01A-11D-A387-09	TCGA-SI-AA8B-10A-01D-A38A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4e8ac125-c26a-4677-9ddb-c0b6c8fa4ddb	47631d66-5a15-4dbc-a27c-c9505a24e1a8	19	13410062	13410062	G	A	SNP	CAC1A	ENST00000360228	human	ensembl	74_37	-1	known	silent	c.2385	p.N795	0.916	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_P/Q_a1su	-	no_errors	CAC1A	HGNC	ENSG00000141837	tier1	-	-	117	0	0.00	92	70	43.21	28	0	0.00	13	20	60.61
PSMF1	0	genome.wustl.edu	37	20	1115769	1115769	+	Missense_Mutation	SNP	A	A	G			TCGA-SI-AA8B-01A-11D-A387-09	TCGA-SI-AA8B-10A-01D-A38A-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4e8ac125-c26a-4677-9ddb-c0b6c8fa4ddb	47631d66-5a15-4dbc-a27c-c9505a24e1a8	20	1115769	1115769	A	G	SNP	PSMF1	ENST00000333082	human	ensembl	74_37	+1	known	missense	c.371	p.Y124C	1.000	pfam_FP_dom	pfam_FP_dom,pfam_PI31_Prot_Reg	-	no_errors	PSMF1	HGNC	ENSG00000125818	tier1	-	-	68	0	0.00	17	24	58.54	97	0	0.00	15	13	46.43
PIWIL2	0	genome.wustl.edu	37	8	22138936	22138936	+	Silent	SNP	G	G	A			TCGA-SI-AA8B-01A-11D-A387-09	TCGA-SI-AA8B-10A-01D-A38A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4e8ac125-c26a-4677-9ddb-c0b6c8fa4ddb	47631d66-5a15-4dbc-a27c-c9505a24e1a8	8	22138936	22138936	G	A	SNP	PIWIL2	ENST00000356766	human	ensembl	74_37	+1	known	silent	c.333	p.K111	0.984	NULL	pfam_Piwi,pfam_PAZ_dom,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	PIWIL2	HGNC	ENSG00000197181	tier1	-	-	65	0	0.00	78	18	18.75	95	0	0.00	91	34	27.20
F7	0	genome.wustl.edu	37	13	113765058	113765058	+	Missense_Mutation	SNP	A	A	G			TCGA-SI-AA8B-01A-11D-A387-09	TCGA-SI-AA8B-10A-01D-A38A-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4e8ac125-c26a-4677-9ddb-c0b6c8fa4ddb	47631d66-5a15-4dbc-a27c-c9505a24e1a8	13	113765058	113765058	A	G	SNP	F7	ENST00000375581	human	ensembl	74_37	+1	known	missense	c.185	p.N62S	1.000	pirsf_Pept_S1A_FX,superfamily_GLA_domain,smart_GLA_domain,pfscan_GLA_domain	pirsf_Pept_S1A_FX,pfam_Peptidase_S1,pfam_GLA_domain,pfam_Peptidase_S1A_nudel,pfam_EG-like_dom,superfamily_Trypsin-like_Pept_dom,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Peptidase_S1,prints_Peptidase_S1A,prints_GLA_domain,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Peptidase_S1	-	no_errors	F7	HGNC	ENSG00000057593	tier1	-	-	142	0	0.00	277	29	9.48	15	0	0.00	20	3	13.04
TMEM8C	0	genome.wustl.edu	37	9	136384035	136384035	+	Silent	SNP	G	G	A			TCGA-SI-AA8B-01A-11D-A387-09	TCGA-SI-AA8B-10A-01D-A38A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4e8ac125-c26a-4677-9ddb-c0b6c8fa4ddb	47631d66-5a15-4dbc-a27c-c9505a24e1a8	9	136384035	136384035	G	A	SNP	TMEM8C	ENST00000339996	human	ensembl	74_37	-1	known	silent	c.360	p.G120	0.983	pfam_DUF3522	pfam_DUF3522	-	no_errors	TMEM8C	HGNC	ENSG00000187616	tier1	-	-	60	0	0.00	44	21	32.31	24	0	0.00	18	6	25.00
SNX14	0	genome.wustl.edu	37	6	86215589	86215589	+	R	SNP	A	A	G			TCGA-SI-AA8B-01A-11D-A387-09	TCGA-SI-AA8B-10A-01D-A38A-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4e8ac125-c26a-4677-9ddb-c0b6c8fa4ddb	47631d66-5a15-4dbc-a27c-c9505a24e1a8	6	86215589	86215589	A	G	SNP	SNX14	ENST00000508980	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SNX14	HGNC	ENSG00000135317	tier1	-	-	24	0	0.00	14	4	22.22	51	0	0.00	46	13	21.67
CAPN7	0	genome.wustl.edu	37	3	15253704	15253704	+	Missense_Mutation	SNP	G	G	A			TCGA-SI-AA8B-01A-11D-A387-09	TCGA-SI-AA8B-10A-01D-A38A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4e8ac125-c26a-4677-9ddb-c0b6c8fa4ddb	47631d66-5a15-4dbc-a27c-c9505a24e1a8	3	15253704	15253704	G	A	SNP	CAPN7	ENST00000253693	human	ensembl	74_37	+1	known	missense	c.196	p.A66T	1.000	pfam_MIT,smart_MIT	pfam_Peptidase_C2_calpain_cat,pfam_MIT,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_MIT,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,prints_Calpain_cysteine_protease,pfscan_Peptidase_C2_calpain_cat	-	no_errors	CAPN7	HGNC	ENSG00000131375	tier1	-	-	65	0	0.00	42	29	40.85	73	0	0.00	44	23	34.33
SCAND3	0	genome.wustl.edu	37	6	28540109	28540109	+	Nonsense_Mutation	SNP	A	A	T			TCGA-SI-AA8B-01A-11D-A387-09	TCGA-SI-AA8B-10A-01D-A38A-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4e8ac125-c26a-4677-9ddb-c0b6c8fa4ddb	47631d66-5a15-4dbc-a27c-c9505a24e1a8	6	28540109	28540109	A	T	SNP	SCAND3	ENST00000452236	human	ensembl	74_37	-1	known	nonsense	c.3557	p.L1186*	0.992	superfamily_RNaseH-like_dom	pfam_Tscrpt_reg_SCAN,pfam_Integrase_cat-core,pfam_HATC_dom_C,superfamily_Retrov_capsid_C,superfamily_RNaseH-like_dom,smart_Tscrpt_reg_SCAN,pfscan_Integrase_cat-core,pfscan_Tscrpt_reg_SCAN	-	no_errors	SCAND3	HGNC	ENSG00000232040	tier1	-	-	91	0	0.00	53	23	30.26	73	0	0.00	49	27	35.53
POF1B	0	genome.wustl.edu	37	X	84614563	84614563	+	Missense_Mutation	SNP	G	G	C			TCGA-SI-AA8B-01A-11D-A387-09	TCGA-SI-AA8B-10A-01D-A38A-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4e8ac125-c26a-4677-9ddb-c0b6c8fa4ddb	47631d66-5a15-4dbc-a27c-c9505a24e1a8	X	84614563	84614563	G	C	SNP	POF1B	ENST00000373145	human	ensembl	74_37	-1	known	missense	c.430	p.P144A	1.000	NULL	NULL	-	no_errors	POF1B	HGNC	ENSG00000124429	tier1	-	-	84	0	0.00	51	52	50.49	98	0	0.00	57	64	52.46
TAOK1	0	genome.wustl.edu	37	17	27822611	27822611	+	Missense_Mutation	SNP	G	G	A			TCGA-SI-AA8B-01A-11D-A387-09	TCGA-SI-AA8B-10A-01D-A38A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4e8ac125-c26a-4677-9ddb-c0b6c8fa4ddb	47631d66-5a15-4dbc-a27c-c9505a24e1a8	17	27822611	27822611	G	A	SNP	TAOK1	ENST00000261716	human	ensembl	74_37	+1	known	missense	c.865	p.V289M	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Homeodomain-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TAOK1	HGNC	ENSG00000160551	tier1	-	-	81	0	0.00	59	19	24.36	53	0	0.00	68	10	12.82
ETV1	0	genome.wustl.edu	37	7	13971306	13971306	+	Missense_Mutation	SNP	C	C	A			TCGA-SI-AA8B-01A-11D-A387-09	TCGA-SI-AA8B-10A-01D-A38A-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4e8ac125-c26a-4677-9ddb-c0b6c8fa4ddb	47631d66-5a15-4dbc-a27c-c9505a24e1a8	7	13971306	13971306	C	A	SNP	ETV1	ENST00000405218	human	ensembl	74_37	-1	known	missense	c.623	p.R208L	1.000	pfam_ETS_PEA3_N	pfam_ETS_PEA3_N,pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ETV1	HGNC	ENSG00000006468	tier1	-	-	90	0	0.00	183	42	18.58	146	0	0.00	174	30	14.56
ATRX	0	genome.wustl.edu	37	X	76938686	76938686	+	Nonsense_Mutation	SNP	T	T	A			TCGA-SI-AA8B-01A-11D-A387-09	TCGA-SI-AA8B-10A-01D-A38A-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4e8ac125-c26a-4677-9ddb-c0b6c8fa4ddb	47631d66-5a15-4dbc-a27c-c9505a24e1a8	X	76938686	76938686	T	A	SNP	ATRX	ENST00000373344	human	ensembl	74_37	-1	known	nonsense	c.2062	p.K688*	0.984	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224	tier1	-	-	28	0	0.00	24	22	47.83	95	0	0.00	31	48	60.76
KATL1	0	genome.wustl.edu	37	13	30829681	30829681	+	Missense_Mutation	SNP	G	G	A			TCGA-SI-AA8B-01A-11D-A387-09	TCGA-SI-AA8B-10A-01D-A38A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4e8ac125-c26a-4677-9ddb-c0b6c8fa4ddb	47631d66-5a15-4dbc-a27c-c9505a24e1a8	13	30829681	30829681	G	A	SNP	KATL1	ENST00000380615	human	ensembl	74_37	-1	known	missense	c.395	p.A132V	1.000	NULL	pfam_ATPase_AAA_core,pfam_Vps4_C,pfam_D_helicase_Holl-junc_RuvB_N,pfam_ATPase_AAA-2,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	KATL1	HGNC	ENSG00000102781	tier1	-	-	140	0	0.00	53	61	52.59	62	0	0.00	22	16	40.00
CAC2D3	0	genome.wustl.edu	37	3	55107538	55107538	+	Silent	SNP	C	C	G			TCGA-SI-AA8B-01A-11D-A387-09	TCGA-SI-AA8B-10A-01D-A38A-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4e8ac125-c26a-4677-9ddb-c0b6c8fa4ddb	47631d66-5a15-4dbc-a27c-c9505a24e1a8	3	55107538	55107538	C	G	SNP	CAC2D3	ENST00000288197	human	ensembl	74_37	+1	known	silent	c.3054	p.L1018	1.000	NULL	pfam_VWA_N,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CAC2D3	HGNC	ENSG00000157445	tier1	-	-	89	0	0.00	71	59	45.38	100	0	0.00	26	39	60.00
SBNO1	0	genome.wustl.edu	37	12	123812034	123812034	+	Missense_Mutation	SNP	T	T	C			TCGA-SI-AA8B-01A-11D-A387-09	TCGA-SI-AA8B-10A-01D-A38A-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4e8ac125-c26a-4677-9ddb-c0b6c8fa4ddb	47631d66-5a15-4dbc-a27c-c9505a24e1a8	12	123812034	123812034	T	C	SNP	SBNO1	ENST00000420886	human	ensembl	74_37	-1	known	missense	c.1631	p.K544R	1.000	NULL	pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Prismane-like	-	no_errors	SBNO1	HGNC	ENSG00000139697	tier1	-	-	34	0	0.00	29	9	23.68	119	0	0.00	87	26	23.01
SGPL1	0	genome.wustl.edu	37	10	72619225	72619225	+	Missense_Mutation	SNP	T	T	C			TCGA-SI-AA8B-01A-11D-A387-09	TCGA-SI-AA8B-10A-01D-A38A-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4e8ac125-c26a-4677-9ddb-c0b6c8fa4ddb	47631d66-5a15-4dbc-a27c-c9505a24e1a8	10	72619225	72619225	T	C	SNP	SGPL1	ENST00000373202	human	ensembl	74_37	+1	known	missense	c.584	p.L195P	1.000	superfamily_PyrdxlP-dep_Trfase	pfam_PyrdxlP-dep_de-COase,pfam_Aminotrans_V/Cys_dSase,pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	-	no_errors	SGPL1	HGNC	ENSG00000166224	tier1	-	-	153	0	0.00	62	44	41.51	91	0	0.00	37	32	45.71
MLIP	0	genome.wustl.edu	37	6	53986311	53986311	+	Missense_Mutation	SNP	C	C	A			TCGA-SI-AA8B-01A-11D-A387-09	TCGA-SI-AA8B-10A-01D-A38A-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4e8ac125-c26a-4677-9ddb-c0b6c8fa4ddb	47631d66-5a15-4dbc-a27c-c9505a24e1a8	6	53986311	53986311	C	A	SNP	MLIP	ENST00000274897	human	ensembl	74_37	+1	known	missense	c.130	p.P44T	1.000	NULL	NULL	-	no_errors	MLIP	HGNC	ENSG00000146147	tier1	-	-	53	0	0.00	68	13	16.05	106	0	0.00	102	21	17.07
SOX3	0	genome.wustl.edu	37	X	139586763	139586763	+	Missense_Mutation	SNP	G	G	A			TCGA-SI-AA8B-01A-11D-A387-09	TCGA-SI-AA8B-10A-01D-A38A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4e8ac125-c26a-4677-9ddb-c0b6c8fa4ddb	47631d66-5a15-4dbc-a27c-c9505a24e1a8	X	139586763	139586763	G	A	SNP	SOX3	ENST00000370536	human	ensembl	74_37	-1	known	missense	c.463	p.R155C	1.000	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	pfam_HMG_box_dom,pfam_TF_SOX,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX3	HGNC	ENSG00000134595	tier1	-	-	142	0	0.00	194	34	14.91	31	0	0.00	27	4	12.90
TMEM132C	0	genome.wustl.edu	37	12	129190234	129190234	+	Silent	SNP	G	G	C			TCGA-SI-AA8B-01A-11D-A387-09	TCGA-SI-AA8B-10A-01D-A38A-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4e8ac125-c26a-4677-9ddb-c0b6c8fa4ddb	47631d66-5a15-4dbc-a27c-c9505a24e1a8	12	129190234	129190234	G	C	SNP	TMEM132C	ENST00000435159	human	ensembl	74_37	+1	known	silent	c.2721	p.G907	0.049	NULL	NULL	-	no_errors	TMEM132C	HGNC	ENSG00000181234	tier1	-	-	83	0	0.00	78	22	22.00	35	0	0.00	42	11	20.75
KCNJ12	0	genome.wustl.edu	37	17	21318772	21318772	+	Missense_Mutation	SNP	C	C	T			TCGA-SI-AA8B-01A-11D-A387-09	TCGA-SI-AA8B-10A-01D-A38A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4e8ac125-c26a-4677-9ddb-c0b6c8fa4ddb	47631d66-5a15-4dbc-a27c-c9505a24e1a8	17	21318772	21318772	C	T	SNP	KCNJ12	ENST00000331718	human	ensembl	74_37	+1	known	missense	c.118	p.R40C	1.000	pfam_K_chnl_inward-rec_Kir_N,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,pfam_K_chnl_inward-rec_Kir_N,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir2.2	-	no_errors	KCNJ12	HGNC	ENSG00000184185	tier1	-	-	129	0	0.00	168	27	13.85	120	0	0.00	72	8	10.00
TUBGCP2	0	genome.wustl.edu	37	10	135094822	135094822	+	Missense_Mutation	SNP	T	T	C			TCGA-SI-AA8B-01A-11D-A387-09	TCGA-SI-AA8B-10A-01D-A38A-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4e8ac125-c26a-4677-9ddb-c0b6c8fa4ddb	47631d66-5a15-4dbc-a27c-c9505a24e1a8	10	135094822	135094822	T	C	SNP	TUBGCP2	ENST00000543663	human	ensembl	74_37	-1	known	missense	c.2612	p.Y871C	1.000	NULL	pfam_TUBGCP,superfamily_Ocr	-	no_errors	TUBGCP2	HGNC	ENSG00000130640	tier1	-	-	76	0	0.00	45	20	30.30	61	0	0.00	14	8	36.36
ENSG00000249275	0	genome.wustl.edu	37	4	158559249	158559249	+	R	SNP	A	A	C			TCGA-SI-AA8B-01A-11D-A387-09	TCGA-SI-AA8B-10A-01D-A38A-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4e8ac125-c26a-4677-9ddb-c0b6c8fa4ddb	47631d66-5a15-4dbc-a27c-c9505a24e1a8	4	158559249	158559249	A	C	SNP	ENSG00000249275	ENST00000507296	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.020	-	-	-	no_errors	RP11-364P22.2	Clone_based_vega_gene	ENSG00000249275	tier1	-	-	8	0	0.00	4	8	66.67	22	0	0.00	20	11	35.48
TTLL9	0	genome.wustl.edu	37	20	30522516	30522516	+	Missense_Mutation	SNP	C	C	T			TCGA-SI-AA8B-01A-11D-A387-09	TCGA-SI-AA8B-10A-01D-A38A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4e8ac125-c26a-4677-9ddb-c0b6c8fa4ddb	47631d66-5a15-4dbc-a27c-c9505a24e1a8	20	30522516	30522516	C	T	SNP	TTLL9	ENST00000375938	human	ensembl	74_37	+1	known	missense	c.829	p.R277C	1.000	pfam_TTL/TTLL_fam	pfam_TTL/TTLL_fam	-	no_errors	TTLL9	HGNC	ENSG00000131044	tier1	-	-	34	0	0.00	43	32	42.11	27	0	0.00	16	10	38.46
TPH2	0	genome.wustl.edu	37	12	72425429	72425429	+	Missense_Mutation	SNP	C	C	T			TCGA-SI-AA8B-01A-11D-A387-09	TCGA-SI-AA8B-10A-01D-A38A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4e8ac125-c26a-4677-9ddb-c0b6c8fa4ddb	47631d66-5a15-4dbc-a27c-c9505a24e1a8	12	72425429	72425429	C	T	SNP	TPH2	ENST00000333850	human	ensembl	74_37	+1	known	missense	c.1427	p.T476I	1.000	pfam_Aromatic-AA_hydroxylase_C,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,tigrfam_Trp_5_mOase	pfam_Aromatic-AA_hydroxylase_C,pfam_ACT_dom,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,prints_Aromatic-AA_hydroxylase_C,tigrfam_Trp_5_mOase	-	no_errors	TPH2	HGNC	ENSG00000139287	tier1	-	-	47	0	0.00	48	9	15.79	124	0	0.00	84	24	22.22
ZNF536	0	genome.wustl.edu	37	19	30935562	30935562	+	Missense_Mutation	SNP	C	C	A			TCGA-SI-AA8B-01A-11D-A387-09	TCGA-SI-AA8B-10A-01D-A38A-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4e8ac125-c26a-4677-9ddb-c0b6c8fa4ddb	47631d66-5a15-4dbc-a27c-c9505a24e1a8	19	30935562	30935562	C	A	SNP	ZNF536	ENST00000355537	human	ensembl	74_37	+1	known	missense	c.1093	p.R365S	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF536	HGNC	ENSG00000198597	tier1	-	-	77	0	0.00	56	14	20.00	56	0	0.00	23	5	17.86
RASSF8	0	genome.wustl.edu	37	12	26218075	26218075	+	Nonsense_Mutation	SNP	A	A	T			TCGA-SI-AA8B-01A-11D-A387-09	TCGA-SI-AA8B-10A-01D-A38A-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4e8ac125-c26a-4677-9ddb-c0b6c8fa4ddb	47631d66-5a15-4dbc-a27c-c9505a24e1a8	12	26218075	26218075	A	T	SNP	RASSF8	ENST00000282884	human	ensembl	74_37	+1	known	nonsense	c.748	p.K250*	0.998	NULL	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc	-	no_errors	RASSF8	HGNC	ENSG00000123094	tier1	-	-	40	0	0.00	27	10	27.03	77	0	0.00	56	17	23.29
FAM182B	0	genome.wustl.edu	37	20	25755837	25755837	+	Missense_Mutation	SNP	G	G	A			TCGA-SI-AA8B-01A-11D-A387-09	TCGA-SI-AA8B-10A-01D-A38A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4e8ac125-c26a-4677-9ddb-c0b6c8fa4ddb	47631d66-5a15-4dbc-a27c-c9505a24e1a8	20	25755837	25755837	G	A	SNP	FAM182B	ENST00000376404	human	ensembl	74_37	-1	known	missense	c.110	p.P37L	0.210	NULL	NULL	-	no_errors	FAM182B	HGNC	ENSG00000175170	tier1	-	-	121	0	0.00	60	12	16.67	64	0	0.00	32	7	17.95
ALDH1L1	0	genome.wustl.edu	37	3	125877353	125877353	+	Missense_Mutation	SNP	C	C	A			TCGA-SI-AA8B-01A-11D-A387-09	TCGA-SI-AA8B-10A-01D-A38A-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4e8ac125-c26a-4677-9ddb-c0b6c8fa4ddb	47631d66-5a15-4dbc-a27c-c9505a24e1a8	3	125877353	125877353	C	A	SNP	ALDH1L1	ENST00000393434	human	ensembl	74_37	-1	known	missense	c.257	p.C86F	1.000	pfam_Formyl_transf_N,superfamily_Formyl_transf_N,pirsf_10_FTHF_DH	pfam_Aldehyde_DH_dom,pfam_Formyl_transf_N,pfam_Formyl_trans_C,pfam_Acyl_carrier_prot-like,superfamily_Ald_DH/histidinol_DH,superfamily_Formyl_transf_N,superfamily_Formyl_transferase_C-like,superfamily_Acyl_carrier_prot-like,pirsf_10_FTHF_DH,pfscan_Acyl_carrier_prot-like	-	no_errors	ALDH1L1	HGNC	ENSG00000144908	tier1	-	-	64	0	0.00	60	7	10.29	79	0	0.00	44	8	15.38
NRXN3	0	genome.wustl.edu	37	14	80327832	80327832	+	Missense_Mutation	SNP	C	C	A			TCGA-SI-AA8B-01A-11D-A387-09	TCGA-SI-AA8B-10A-01D-A38A-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4e8ac125-c26a-4677-9ddb-c0b6c8fa4ddb	47631d66-5a15-4dbc-a27c-c9505a24e1a8	14	80327832	80327832	C	A	SNP	NRXN3	ENST00000557594	human	ensembl	74_37	+1	novel	missense	c.1439	p.A480D	1.000	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_Neurexin-like,pfscan_Laminin_G	-	no_errors	NRXN3	HGNC	ENSG00000021645	tier1	-	-	74	0	0.00	34	34	50.00	72	0	0.00	25	29	53.70
CCDC171	0	genome.wustl.edu	37	9	15744289	15744290	+	Frame_Shift_Ins	INS	-	-	A			TCGA-SI-AA8B-01A-11D-A387-09	TCGA-SI-AA8B-10A-01D-A38A-09	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4e8ac125-c26a-4677-9ddb-c0b6c8fa4ddb	47631d66-5a15-4dbc-a27c-c9505a24e1a8	9	15744289	15744290	-	A	INS	CCDC171	ENST00000380701	human	ensembl	74_37	+1	known	frame_shift_ins	c.2068_2069	p.N692fs	1.000:1.000	superfamily_STAT_TF_coiled-coil	superfamily_STAT_TF_coiled-coil	-	no_errors	CCDC171	HGNC	ENSG00000164989	tier1			64	0	0.00	41	7	14.58	56	0	0.00	70	12	14.63
ADAP2	0	genome.wustl.edu	37	17	29233372	29233372	+	R	SNP	G	G	T			TCGA-SI-AA8B-01A-11D-A387-09	TCGA-SI-AA8B-10A-01D-A38A-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4e8ac125-c26a-4677-9ddb-c0b6c8fa4ddb	47631d66-5a15-4dbc-a27c-c9505a24e1a8	17	29233372	29233372	G	T	SNP	ADAP2	ENST00000583688	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	ADAP2	HGNC	ENSG00000184060	tier1	-	-	14	0	0.00	4	8	66.67	7	0	0.00	3	3	50.00
C1orf106	0	genome.wustl.edu	37	1	200880698	200880698	+	Silent	SNP	G	G	A			TCGA-SI-AA8B-01A-11D-A387-09	TCGA-SI-AA8B-10A-01D-A38A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4e8ac125-c26a-4677-9ddb-c0b6c8fa4ddb	47631d66-5a15-4dbc-a27c-c9505a24e1a8	1	200880698	200880698	G	A	SNP	C1orf106	ENST00000367342	human	ensembl	74_37	+1	known	silent	c.1332	p.P444	0.687	NULL	pfam_DUF3338	-	no_errors	C1orf106	HGNC	ENSG00000163362	tier1	-	-	98	0	0.00	50	25	32.89	14	0	0.00	8	2	20.00
ERG	0	genome.wustl.edu	37	21	39947669	39947669	+	R	SNP	C	C	T			TCGA-SI-AA8B-01A-11D-A387-09	TCGA-SI-AA8B-10A-01D-A38A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4e8ac125-c26a-4677-9ddb-c0b6c8fa4ddb	47631d66-5a15-4dbc-a27c-c9505a24e1a8	21	39947669	39947669	C	T	SNP	ERG	ENST00000485493	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.073	-	-	-	no_errors	ERG	HGNC	ENSG00000157554	tier1	-	-	40	0	0.00	3	26	89.66	84	0	0.00	8	48	85.71
INPP5D	0	genome.wustl.edu	37	2	234055015	234055015	+	Silent	SNP	C	C	G			TCGA-SI-AA8B-01A-11D-A387-09	TCGA-SI-AA8B-10A-01D-A38A-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4e8ac125-c26a-4677-9ddb-c0b6c8fa4ddb	47631d66-5a15-4dbc-a27c-c9505a24e1a8	2	234055015	234055015	C	G	SNP	INPP5D	ENST00000359570	human	ensembl	74_37	+1	known	silent	c.801	p.V267	1.000	NULL	pfam_Endo/exonuclease/phosphatase,pfam_SH2,superfamily_Endo/exonuclease/phosphatase,smart_SH2,smart_IPPc,pfscan_SH2,prints_SH2	-	no_errors	INPP5D	HGNC	ENSG00000168918	tier1	-	-	66	0	0.00	10	40	80.00	47	0	0.00	4	27	87.10
MRGPRX4	0	genome.wustl.edu	37	11	18195645	18195645	+	Missense_Mutation	SNP	G	G	A			TCGA-SI-AA8B-01A-11D-A387-09	TCGA-SI-AA8B-10A-01D-A38A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4e8ac125-c26a-4677-9ddb-c0b6c8fa4ddb	47631d66-5a15-4dbc-a27c-c9505a24e1a8	11	18195645	18195645	G	A	SNP	MRGPRX4	ENST00000314254	human	ensembl	74_37	+1	known	missense	c.842	p.R281H	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	MRGPRX4	HGNC	ENSG00000179817	tier1	-	-	67	0	0.00	33	52	61.18	5	0	0.00	7	9	56.25
OPRK1	0	genome.wustl.edu	37	8	54163589	54163589	+	Silent	SNP	G	G	A			TCGA-SI-AA8B-01A-11D-A387-09	TCGA-SI-AA8B-10A-01D-A38A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4e8ac125-c26a-4677-9ddb-c0b6c8fa4ddb	47631d66-5a15-4dbc-a27c-c9505a24e1a8	8	54163589	54163589	G	A	SNP	OPRK1	ENST00000265572	human	ensembl	74_37	-1	known	silent	c.9	p.S3	0.999	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_Kappa_opi_rcpt,prints_GPCR_Rhodpsn,prints_Opioid_rcpt,prints_Neuropept_B/W_rcpt,prints_Somatstn_rcpt,prints_NPY_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OPRK1	HGNC	ENSG00000082556	tier1	-	-	29	0	0.00	25	25	48.08	9	0	0.00	3	7	70.00
OR2T1	0	genome.wustl.edu	37	1	248569970	248569970	+	Missense_Mutation	SNP	C	C	A			TCGA-SI-AA8B-01A-11D-A387-09	TCGA-SI-AA8B-10A-01D-A38A-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4e8ac125-c26a-4677-9ddb-c0b6c8fa4ddb	47631d66-5a15-4dbc-a27c-c9505a24e1a8	1	248569970	248569970	C	A	SNP	OR2T1	ENST00000366474	human	ensembl	74_37	+1	known	missense	c.675	p.N225K	0.054	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T1	HGNC	ENSG00000175143	tier1	-	-	44	0	0.00	5	37	88.10	89	0	0.00	8	45	84.91
SPIB	0	genome.wustl.edu	37	19	50923209	50923209	+	Missense_Mutation	SNP	C	C	A			TCGA-SI-AA8B-01A-11D-A387-09	TCGA-SI-AA8B-10A-01D-A38A-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4e8ac125-c26a-4677-9ddb-c0b6c8fa4ddb	47631d66-5a15-4dbc-a27c-c9505a24e1a8	19	50923209	50923209	C	A	SNP	SPIB	ENST00000595883	human	ensembl	74_37	+1	known	missense	c.30	p.D10E	0.990	NULL	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	SPIB	HGNC	ENSG00000269404	tier1	-	-	240	0	0.00	127	69	35.20	24	0	0.00	1	5	83.33
SLAIN2	0	genome.wustl.edu	37	4	48380035	48380035	+	Nonsense_Mutation	SNP	C	C	T			TCGA-SI-AA8B-01A-11D-A387-09	TCGA-SI-AA8B-10A-01D-A38A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4e8ac125-c26a-4677-9ddb-c0b6c8fa4ddb	47631d66-5a15-4dbc-a27c-c9505a24e1a8	4	48380035	48380035	C	T	SNP	SLAIN2	ENST00000264313	human	ensembl	74_37	+1	known	nonsense	c.661	p.R221*	1.000	NULL	NULL	-	no_errors	SLAIN2	HGNC	ENSG00000109171	tier1	-	-	68	0	0.00	61	7	10.29	117	0	0.00	116	7	5.69
AMOT	0	genome.wustl.edu	37	X	112022791	112022791	+	Missense_Mutation	SNP	G	G	A			TCGA-SI-AA8B-01A-11D-A387-09	TCGA-SI-AA8B-10A-01D-A38A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4e8ac125-c26a-4677-9ddb-c0b6c8fa4ddb	47631d66-5a15-4dbc-a27c-c9505a24e1a8	X	112022791	112022791	G	A	SNP	AMOT	ENST00000371959	human	ensembl	74_37	-1	known	missense	c.2591	p.T864I	1.000	NULL	pfam_Angiomotin_C,superfamily_Prefoldin,prints_Angiomotin	-	no_errors	AMOT	HGNC	ENSG00000126016	tier1	-	-	70	0	0.00	92	10	9.80	71	0	0.00	84	8	8.70
TEKT4P2	0	genome.wustl.edu	37	21	9908223	9908223	+	R	SNP	G	G	A			TCGA-SI-AA8B-01A-11D-A387-09	TCGA-SI-AA8B-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4e8ac125-c26a-4677-9ddb-c0b6c8fa4ddb	47631d66-5a15-4dbc-a27c-c9505a24e1a8	21	9908223	9908223	G	A	SNP	TEKT4P2	ENST00000416067	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TEKT4P2	HGNC	ENSG00000188681	tier1	-	-	62	0	0.00	8	2	20.00	13	0	0.00	2	1	33.33
ZDHHC13	0	genome.wustl.edu	37	11	19138776	19138776	+	R	SNP	C	C	T			TCGA-SI-AA8B-01A-11D-A387-09	TCGA-SI-AA8B-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4e8ac125-c26a-4677-9ddb-c0b6c8fa4ddb	47631d66-5a15-4dbc-a27c-c9505a24e1a8	11	19138776	19138776	C	T	SNP	ZDHHC13	ENST00000524744	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.003	-	-	-	no_errors	ZDHHC13	HGNC	ENSG00000177054	tier1	-	-	41	0	0.00	33	4	10.81	7	0	0.00	5	0	0.00
ALG1L13P	0	genome.wustl.edu	37	8	8095821	8095821	+	R	SNP	T	T	C			TCGA-SI-AA8B-01A-11D-A387-09	TCGA-SI-AA8B-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4e8ac125-c26a-4677-9ddb-c0b6c8fa4ddb	47631d66-5a15-4dbc-a27c-c9505a24e1a8	8	8095821	8095821	T	C	SNP	ALG1L13P	ENST00000518201	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ALG1L13P	HGNC	ENSG00000253981	tier1	-	-	274	0	0.00	386	44	10.23	0	0	0.00	0	0	0.00
LOC101927345	0	genome.wustl.edu	37	1	143391795	143391795	+	R	SNP	G	G	A			TCGA-SI-AA8B-01A-11D-A387-09	TCGA-SI-AA8B-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4e8ac125-c26a-4677-9ddb-c0b6c8fa4ddb	47631d66-5a15-4dbc-a27c-c9505a24e1a8	1	143391795	143391795	G	A	SNP	LOC101927345	ENST00000412492	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.855	-	-	-	no_errors	RP11-435B5.5	Clone_based_vega_gene	ENSG00000238261	tier1	-	-	392	0	0.00	303	75	19.84	3	0	0.00	3	0	0.00
PNPLA6	0	genome.wustl.edu	37	19	7619936	7619936	+	Missense_Mutation	SNP	T	T	A			TCGA-SI-AA8B-01A-11D-A387-09	TCGA-SI-AA8B-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4e8ac125-c26a-4677-9ddb-c0b6c8fa4ddb	47631d66-5a15-4dbc-a27c-c9505a24e1a8	19	7619936	7619936	T	A	SNP	PNPLA6	ENST00000414982	human	ensembl	74_37	+1	known	missense	c.2822	p.F941Y	1.000	NULL	pfam_cNMP-bd_dom,pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	PNPLA6	HGNC	ENSG00000032444	tier1	-	-	49	0	0.00	39	10	20.41	4	0	0.00	0	0	0.00
SLIT2	0	genome.wustl.edu	37	4	20530661	20530661	+	Missense_Mutation	SNP	G	G	T			TCGA-SI-AA8B-01A-11D-A387-09	TCGA-SI-AA8B-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4e8ac125-c26a-4677-9ddb-c0b6c8fa4ddb	47631d66-5a15-4dbc-a27c-c9505a24e1a8	4	20530661	20530661	G	T	SNP	SLIT2	ENST00000504154	human	ensembl	74_37	+1	known	missense	c.1552	p.D518Y	1.000	pfam_LRR-contain_N,smart_LRR-contain_N	pfam_EG-like_dom,pfam_Laminin_G,pfam_Leu-rich_rpt,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl_sf,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT2	HGNC	ENSG00000145147	tier1	-	-	50	0	0.00	74	8	9.76	113	0	0.00	147	3	2.00
