Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
MMP10	0	genome.wustl.edu	37	11	102647402	102647402	+	Missense_Mutation	SNP	G	G	C			TCGA-WK-A8XY-01A-11D-A37C-09	TCGA-WK-A8XY-10A-01D-A37F-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec1ddc84-64c1-4852-a98e-5a8406e0df9a	d9bcdaa1-d682-4750-a6d0-14155e7e1ac5	11	102647402	102647402	G	C	SNP	MMP10	ENST00000279441	human	ensembl	74_37	-1	known	missense	c.728	p.T243R	0.012	pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo	pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP10	HGNC	ENSG00000166670	tier1	-	-	39	0	0.00	5	19	79.17	105	0	0.00	10	33	76.74
SETDB1	0	genome.wustl.edu	37	1	150917627	150917627	+	Missense_Mutation	SNP	G	G	C			TCGA-WK-A8XY-01A-11D-A37C-09	TCGA-WK-A8XY-10A-01D-A37F-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec1ddc84-64c1-4852-a98e-5a8406e0df9a	d9bcdaa1-d682-4750-a6d0-14155e7e1ac5	1	150917627	150917627	G	C	SNP	SETDB1	ENST00000368962	human	ensembl	74_37	+1	known	missense	c.1183	p.G395R	0.000	smart_Tudor	smart_Tudor	-	no_errors	SETDB1	HGNC	ENSG00000143379	tier1	-	-	43	0	0.00	39	23	37.10	94	0	0.00	97	58	37.42
SLC19A2	0	genome.wustl.edu	37	1	169446394	169446394	+	Missense_Mutation	SNP	G	G	A			TCGA-WK-A8XY-01A-11D-A37C-09	TCGA-WK-A8XY-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec1ddc84-64c1-4852-a98e-5a8406e0df9a	d9bcdaa1-d682-4750-a6d0-14155e7e1ac5	1	169446394	169446394	G	A	SNP	SLC19A2	ENST00000236137	human	ensembl	74_37	-1	known	missense	c.806	p.P269L	0.543	pfam_Folate_carrier,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pirsf_Folate_carrier	pfam_Folate_carrier,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pirsf_Folate_carrier	-	no_errors	SLC19A2	HGNC	ENSG00000117479	tier1	-	-	35	0	0.00	27	22	44.00	96	0	0.00	66	72	51.80
BNC1	0	genome.wustl.edu	37	15	83932303	83932303	+	Missense_Mutation	SNP	A	A	T			TCGA-WK-A8XY-01A-11D-A37C-09	TCGA-WK-A8XY-10A-01D-A37F-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec1ddc84-64c1-4852-a98e-5a8406e0df9a	d9bcdaa1-d682-4750-a6d0-14155e7e1ac5	15	83932303	83932303	A	T	SNP	BNC1	ENST00000345382	human	ensembl	74_37	-1	known	missense	c.1700	p.M567K	0.001	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BNC1	HGNC	ENSG00000169594	tier1	-	-	46	0	0.00	25	33	56.90	67	0	0.00	54	45	45.45
ZNF574	0	genome.wustl.edu	37	19	42584298	42584298	+	Missense_Mutation	SNP	C	C	G			TCGA-WK-A8XY-01A-11D-A37C-09	TCGA-WK-A8XY-10A-01D-A37F-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec1ddc84-64c1-4852-a98e-5a8406e0df9a	d9bcdaa1-d682-4750-a6d0-14155e7e1ac5	19	42584298	42584298	C	G	SNP	ZNF574	ENST00000222339	human	ensembl	74_37	+1	known	missense	c.1810	p.L604V	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF574	HGNC	ENSG00000105732	tier1	-	-	34	0	0.00	20	26	55.32	59	0	0.00	40	37	48.05
MUC16	0	genome.wustl.edu	37	19	9076289	9076289	+	Silent	SNP	A	A	T			TCGA-WK-A8XY-01A-11D-A37C-09	TCGA-WK-A8XY-10A-01D-A37F-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec1ddc84-64c1-4852-a98e-5a8406e0df9a	d9bcdaa1-d682-4750-a6d0-14155e7e1ac5	19	9076289	9076289	A	T	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	silent	c.11157	p.T3719	0.001	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143	tier1	-	-	42	0	0.00	24	20	45.45	94	0	0.00	68	49	41.88
ADAMTS6	0	genome.wustl.edu	37	5	64748637	64748637	+	Missense_Mutation	SNP	C	C	A			TCGA-WK-A8XY-01A-11D-A37C-09	TCGA-WK-A8XY-10A-01D-A37F-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec1ddc84-64c1-4852-a98e-5a8406e0df9a	d9bcdaa1-d682-4750-a6d0-14155e7e1ac5	5	64748637	64748637	C	A	SNP	ADAMTS6	ENST00000381055	human	ensembl	74_37	-1	known	missense	c.740	p.S247I	1.000	NULL	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS6	HGNC	ENSG00000049192	tier1	-	-	34	0	0.00	23	16	41.03	56	0	0.00	53	53	49.53
LRRC38	0	genome.wustl.edu	37	1	13839703	13839703	+	Missense_Mutation	SNP	C	C	T			TCGA-WK-A8XY-01A-11D-A37C-09	TCGA-WK-A8XY-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec1ddc84-64c1-4852-a98e-5a8406e0df9a	d9bcdaa1-d682-4750-a6d0-14155e7e1ac5	1	13839703	13839703	C	T	SNP	LRRC38	ENST00000376085	human	ensembl	74_37	-1	known	missense	c.386	p.R129K	0.997	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRRC38	HGNC	ENSG00000162494	tier1	-	-	68	0	0.00	58	37	38.95	38	0	0.00	27	26	49.06
GAK	0	genome.wustl.edu	37	4	870905	870905	+	Silent	SNP	G	G	T			TCGA-WK-A8XY-01A-11D-A37C-09	TCGA-WK-A8XY-10A-01D-A37F-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec1ddc84-64c1-4852-a98e-5a8406e0df9a	d9bcdaa1-d682-4750-a6d0-14155e7e1ac5	4	870905	870905	G	T	SNP	GAK	ENST00000314167	human	ensembl	74_37	-1	known	silent	c.1947	p.S649	0.997	pfam_Tensin_phosphatase_C2-dom,superfamily_C2_dom,pfscan_Tensin_phosphatase_C2-dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Tensin_phosphatase_C2-dom,pfam_DnaJ_domain,superfamily_Kinase-like_dom,superfamily_DnaJ_domain,superfamily_C2_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_DnaJ_domain,pfscan_Prot_kinase_dom,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom,pfscan_DnaJ_domain	-	no_errors	GAK	HGNC	ENSG00000178950	tier1	-	-	60	0	0.00	37	30	44.78	26	0	0.00	21	12	36.36
CBX4	0	genome.wustl.edu	37	17	77807835	77807835	+	Missense_Mutation	SNP	A	A	G			TCGA-WK-A8XY-01A-11D-A37C-09	TCGA-WK-A8XY-10A-01D-A37F-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec1ddc84-64c1-4852-a98e-5a8406e0df9a	d9bcdaa1-d682-4750-a6d0-14155e7e1ac5	17	77807835	77807835	A	G	SNP	CBX4	ENST00000269397	human	ensembl	74_37	-1	known	missense	c.1606	p.F536L	1.000	NULL	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,prints_Chromo_dom_subgr,pfscan_Chromo_domain/shadow	-	no_errors	CBX4	HGNC	ENSG00000141582	tier1	-	-	43	0	0.00	28	31	52.54	69	0	0.00	42	20	31.75
ADCY10	0	genome.wustl.edu	37	1	167787437	167787437	+	Missense_Mutation	SNP	C	C	G			TCGA-WK-A8XY-01A-11D-A37C-09	TCGA-WK-A8XY-10A-01D-A37F-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec1ddc84-64c1-4852-a98e-5a8406e0df9a	d9bcdaa1-d682-4750-a6d0-14155e7e1ac5	1	167787437	167787437	C	G	SNP	ADCY10	ENST00000367851	human	ensembl	74_37	-1	known	missense	c.4355	p.R1452T	0.876	pirsf_Adenylate_cylcase_typ10	pfam_A/G_cyclase,superfamily_A/G_cyclase,superfamily_P-loop_NTPase,pirsf_Adenylate_cylcase_typ10,pfscan_A/G_cyclase	-	no_errors	ADCY10	HGNC	ENSG00000143199	tier1	-	-	37	0	0.00	36	26	41.94	100	0	0.00	105	74	41.11
TTC37	0	genome.wustl.edu	37	5	94877519	94877519	+	Missense_Mutation	SNP	C	C	T			TCGA-WK-A8XY-01A-11D-A37C-09	TCGA-WK-A8XY-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec1ddc84-64c1-4852-a98e-5a8406e0df9a	d9bcdaa1-d682-4750-a6d0-14155e7e1ac5	5	94877519	94877519	C	T	SNP	TTC37	ENST00000358746	human	ensembl	74_37	-1	known	missense	c.326	p.S109N	1.000	NULL	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC37	HGNC	ENSG00000198677	tier1	-	-	42	0	0.00	35	20	35.71	76	0	0.00	72	59	44.70
AP2A1	0	genome.wustl.edu	37	19	50303321	50303321	+	Missense_Mutation	SNP	G	G	C			TCGA-WK-A8XY-01A-11D-A37C-09	TCGA-WK-A8XY-10A-01D-A37F-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec1ddc84-64c1-4852-a98e-5a8406e0df9a	d9bcdaa1-d682-4750-a6d0-14155e7e1ac5	19	50303321	50303321	G	C	SNP	AP2A1	ENST00000354293	human	ensembl	74_37	+1	known	missense	c.1369	p.V457L	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP2_complex_asu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a-adaptin_app_sub_C,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP2_complex_asu	-	no_errors	AP2A1	HGNC	ENSG00000196961	tier1	-	-	27	0	0.00	23	18	43.90	140	0	0.00	115	78	40.41
BCLAF1	0	genome.wustl.edu	37	6	136596817	136596817	+	Missense_Mutation	SNP	T	T	A			TCGA-WK-A8XY-01A-11D-A37C-09	TCGA-WK-A8XY-10A-01D-A37F-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec1ddc84-64c1-4852-a98e-5a8406e0df9a	d9bcdaa1-d682-4750-a6d0-14155e7e1ac5	6	136596817	136596817	T	A	SNP	BCLAF1	ENST00000531224	human	ensembl	74_37	-1	known	missense	c.1705	p.R569W	1.000	NULL	NULL	-	no_errors	BCLAF1	HGNC	ENSG00000029363	tier1	-	-	36	0	0.00	27	9	25.00	136	0	0.00	76	21	21.65
GYPC	0	genome.wustl.edu	37	2	127447866	127447866	+	Missense_Mutation	SNP	A	A	G			TCGA-WK-A8XY-01A-11D-A37C-09	TCGA-WK-A8XY-10A-01D-A37F-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec1ddc84-64c1-4852-a98e-5a8406e0df9a	d9bcdaa1-d682-4750-a6d0-14155e7e1ac5	2	127447866	127447866	A	G	SNP	GYPC	ENST00000259254	human	ensembl	74_37	+1	known	missense	c.85	p.M29V	0.000	NULL	smart_Neurexin-like	-	no_errors	GYPC	HGNC	ENSG00000136732	tier1	-	-	31	0	0.00	39	19	32.76	55	0	0.00	48	29	37.66
GAK	0	genome.wustl.edu	37	4	871534	871534	+	Silent	SNP	G	G	T			TCGA-WK-A8XY-01A-11D-A37C-09	TCGA-WK-A8XY-10A-01D-A37F-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec1ddc84-64c1-4852-a98e-5a8406e0df9a	d9bcdaa1-d682-4750-a6d0-14155e7e1ac5	4	871534	871534	G	T	SNP	GAK	ENST00000314167	human	ensembl	74_37	-1	known	silent	c.1725	p.I575	0.988	pfam_Tensin_phosphatase_C2-dom,superfamily_C2_dom,pfscan_Tensin_phosphatase_C2-dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Tensin_phosphatase_C2-dom,pfam_DnaJ_domain,superfamily_Kinase-like_dom,superfamily_DnaJ_domain,superfamily_C2_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_DnaJ_domain,pfscan_Prot_kinase_dom,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom,pfscan_DnaJ_domain	-	no_errors	GAK	HGNC	ENSG00000178950	tier1	-	-	41	0	0.00	35	25	41.67	25	0	0.00	27	7	20.59
MDP1	0	genome.wustl.edu	37	14	24683307	24683307	+	Nonsense_Mutation	SNP	G	G	A			TCGA-WK-A8XY-01A-11D-A37C-09	TCGA-WK-A8XY-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec1ddc84-64c1-4852-a98e-5a8406e0df9a	d9bcdaa1-d682-4750-a6d0-14155e7e1ac5	14	24683307	24683307	G	A	SNP	MDP1	ENST00000288087	human	ensembl	74_37	-1	known	nonsense	c.454	p.Q152*	1.000	pfam_NIF,superfamily_HAD-like_dom,tigrfam_MDP_1_eu_arc	pfam_NIF,superfamily_HAD-like_dom,tigrfam_MDP_1_eu_arc,tigrfam_HAD_SF_ppase_IIIC	-	no_errors	MDP1	HGNC	ENSG00000213920	tier1	-	-	22	0	0.00	23	18	43.90	68	0	0.00	74	52	41.27
POTEC	0	genome.wustl.edu	37	18	14542640	14542640	+	Missense_Mutation	SNP	C	C	A			TCGA-WK-A8XY-01A-11D-A37C-09	TCGA-WK-A8XY-10A-01D-A37F-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec1ddc84-64c1-4852-a98e-5a8406e0df9a	d9bcdaa1-d682-4750-a6d0-14155e7e1ac5	18	14542640	14542640	C	A	SNP	POTEC	ENST00000358970	human	ensembl	74_37	-1	known	missense	c.506	p.R169M	0.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	POTEC	HGNC	ENSG00000183206	tier1	-	-	167	0	0.00	107	82	43.39	45	0	0.00	31	26	45.61
DOCK3	0	genome.wustl.edu	37	3	51273843	51273843	+	Nonsense_Mutation	SNP	T	T	A			TCGA-WK-A8XY-01A-11D-A37C-09	TCGA-WK-A8XY-10A-01D-A37F-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec1ddc84-64c1-4852-a98e-5a8406e0df9a	d9bcdaa1-d682-4750-a6d0-14155e7e1ac5	3	51273843	51273843	T	A	SNP	DOCK3	ENST00000266037	human	ensembl	74_37	+1	known	nonsense	c.1985	p.L662*	0.993	superfamily_ARM-type_fold	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538	tier1	-	-	81	0	0.00	48	35	42.17	89	0	0.00	83	70	45.75
ENSG00000263606	0	genome.wustl.edu	37	18	2946496	2946496	+	R	SNP	G	G	C			TCGA-WK-A8XY-01A-11D-A37C-09	TCGA-WK-A8XY-10A-01D-A37F-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec1ddc84-64c1-4852-a98e-5a8406e0df9a	d9bcdaa1-d682-4750-a6d0-14155e7e1ac5	18	2946496	2946496	G	C	SNP	ENSG00000263606	ENST00000581139	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	RP11-737O24.3	Clone_based_vega_gene	ENSG00000263606	tier1	-	-	52	0	0.00	25	28	52.83	83	0	0.00	49	40	43.96
ATP5C1	0	genome.wustl.edu	37	10	7844282	7844282	+	Nonsense_Mutation	SNP	C	C	A			TCGA-WK-A8XY-01A-11D-A37C-09	TCGA-WK-A8XY-10A-01D-A37F-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec1ddc84-64c1-4852-a98e-5a8406e0df9a	d9bcdaa1-d682-4750-a6d0-14155e7e1ac5	10	7844282	7844282	C	A	SNP	ATP5C1	ENST00000356708	human	ensembl	74_37	+1	known	nonsense	c.687	p.Y229*	1.000	pfam_ATPase_F1-cplx_gsu,superfamily_ATPase_F1_gsu_dom,tigrfam_ATPase_F1-cplx_gsu	pfam_ATPase_F1-cplx_gsu,superfamily_ATPase_F1_gsu_dom,prints_ATPase_F1-cplx_gsu,tigrfam_ATPase_F1-cplx_gsu	-	no_errors	ATP5C1	HGNC	ENSG00000165629	tier1	-	-	18	0	0.00	10	7	41.18	31	0	0.00	42	29	40.85
RPS15A	0	genome.wustl.edu	37	16	18800247	18800247	+	R	SNP	C	C	T			TCGA-WK-A8XY-01A-11D-A37C-09	TCGA-WK-A8XY-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec1ddc84-64c1-4852-a98e-5a8406e0df9a	d9bcdaa1-d682-4750-a6d0-14155e7e1ac5	16	18800247	18800247	C	T	SNP	RPS15A	ENST00000573554	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	RPS15A	HGNC	ENSG00000134419	tier1	-	-	21	0	0.00	15	12	44.44	59	0	0.00	60	42	40.78
DNM1	0	genome.wustl.edu	37	9	131001728	131001728	+	Missense_Mutation	SNP	T	T	C			TCGA-WK-A8XY-01A-11D-A37C-09	TCGA-WK-A8XY-10A-01D-A37F-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec1ddc84-64c1-4852-a98e-5a8406e0df9a	d9bcdaa1-d682-4750-a6d0-14155e7e1ac5	9	131001728	131001728	T	C	SNP	DNM1	ENST00000372923	human	ensembl	74_37	+1	known	missense	c.1427	p.M476T	1.000	pfam_Dynamin_central	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,pfam_Pleckstrin_homology,superfamily_P-loop_NTPase,smart_Dynamin_GTPase,smart_Pleckstrin_homology,smart_GED,pfscan_Pleckstrin_homology,prints_Dynamin_SF	-	no_errors	DNM1	HGNC	ENSG00000106976	tier1	-	-	33	0	0.00	16	12	42.86	76	0	0.00	52	43	45.26
LRP2	0	genome.wustl.edu	37	2	170042037	170042037	+	Missense_Mutation	SNP	C	C	T			TCGA-WK-A8XY-01A-11D-A37C-09	TCGA-WK-A8XY-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec1ddc84-64c1-4852-a98e-5a8406e0df9a	d9bcdaa1-d682-4750-a6d0-14155e7e1ac5	2	170042037	170042037	C	T	SNP	LRP2	ENST00000263816	human	ensembl	74_37	-1	known	missense	c.9821	p.S3274N	1.000	superfamily_Growth_fac_rcpt_N_dom,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479	tier1	-	-	65	0	0.00	29	30	50.85	62	0	0.00	82	39	32.23
GPR144	0	genome.wustl.edu	37	9	127220913	127220913	+	Silent	SNP	G	G	C			TCGA-WK-A8XY-01A-11D-A37C-09	TCGA-WK-A8XY-10A-01D-A37F-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec1ddc84-64c1-4852-a98e-5a8406e0df9a	d9bcdaa1-d682-4750-a6d0-14155e7e1ac5	9	127220913	127220913	G	C	SNP	GPR144	ENST00000334810	human	ensembl	74_37	+1	known	silent	c.1704	p.V568	1.000	NULL	pfam_GPCR_2_secretin-like,pfam_Pentaxin,pfam_GPS_dom,superfamily_ConA-like_lec_gl_sf,superfamily_C-type_lectin_fold,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_Pentaxin,prints_GPCR_2_secretin-like	-	no_errors	GPR144	HGNC	ENSG00000180264	tier1	-	-	44	0	0.00	27	16	37.21	108	0	0.00	62	75	54.74
EVPL	0	genome.wustl.edu	37	17	74004699	74004699	+	Silent	SNP	G	G	A			TCGA-WK-A8XY-01A-11D-A37C-09	TCGA-WK-A8XY-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec1ddc84-64c1-4852-a98e-5a8406e0df9a	d9bcdaa1-d682-4750-a6d0-14155e7e1ac5	17	74004699	74004699	G	A	SNP	EVPL	ENST00000301607	human	ensembl	74_37	-1	known	silent	c.4587	p.D1529	1.000	NULL	pfam_Plectin_repeat,superfamily_Ferritin-like_SF,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	EVPL	HGNC	ENSG00000167880	tier1	-	-	33	0	0.00	31	27	46.55	54	0	0.00	44	27	38.03
F13A1	0	genome.wustl.edu	37	6	6266904	6266904	+	Missense_Mutation	SNP	C	C	G			TCGA-WK-A8XY-01A-11D-A37C-09	TCGA-WK-A8XY-10A-01D-A37F-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec1ddc84-64c1-4852-a98e-5a8406e0df9a	d9bcdaa1-d682-4750-a6d0-14155e7e1ac5	6	6266904	6266904	C	G	SNP	F13A1	ENST00000264870	human	ensembl	74_37	-1	known	missense	c.458	p.C153S	1.000	pfam_Transglutaminase_N,superfamily_Ig_E-set	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	F13A1	HGNC	ENSG00000124491	tier1	-	-	38	0	0.00	0	18	100.00	127	0	0.00	12	61	83.56
DEPDC1B	0	genome.wustl.edu	37	5	59982797	59982797	+	Missense_Mutation	SNP	G	G	T			TCGA-WK-A8XY-01A-11D-A37C-09	TCGA-WK-A8XY-10A-01D-A37F-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec1ddc84-64c1-4852-a98e-5a8406e0df9a	d9bcdaa1-d682-4750-a6d0-14155e7e1ac5	5	59982797	59982797	G	T	SNP	DEPDC1B	ENST00000265036	human	ensembl	74_37	-1	known	missense	c.306	p.H102Q	0.188	pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	pfam_DEP_dom,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_DEP_dom,pfscan_DEP_dom,pfscan_RhoGAP_dom	-	no_errors	DEPDC1B	HGNC	ENSG00000035499	tier1	-	-	31	0	0.00	17	15	46.88	112	0	0.00	100	59	37.11
SMG8	0	genome.wustl.edu	37	17	57288309	57288309	+	Silent	SNP	G	G	A			TCGA-WK-A8XY-01A-11D-A37C-09	TCGA-WK-A8XY-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec1ddc84-64c1-4852-a98e-5a8406e0df9a	d9bcdaa1-d682-4750-a6d0-14155e7e1ac5	17	57288309	57288309	G	A	SNP	SMG8	ENST00000300917	human	ensembl	74_37	+1	known	silent	c.897	p.R299	0.996	pfam_Smg8/Smg9	pfam_Smg8/Smg9	-	no_errors	SMG8	HGNC	ENSG00000167447	tier1	-	-	33	0	0.00	29	20	40.82	88	0	0.00	56	63	52.94
BCKDHA	0	genome.wustl.edu	37	19	41884369	41884369	+	Missense_Mutation	SNP	C	C	G			TCGA-WK-A8XY-01A-11D-A37C-09	TCGA-WK-A8XY-10A-01D-A37F-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec1ddc84-64c1-4852-a98e-5a8406e0df9a	d9bcdaa1-d682-4750-a6d0-14155e7e1ac5	19	41884369	41884369	C	G	SNP	BCKDHA	ENST00000595085	human	ensembl	74_37	+1	known	missense	c.155	p.P52R	0.644	NULL	pfam_DH_E1,pfam_Transketolase_N	-	no_errors	BCKDHA	HGNC	ENSG00000248098	tier1	-	-	33	0	0.00	28	23	45.10	86	0	0.00	40	52	56.52
PTCHD1	0	genome.wustl.edu	37	X	23410954	23410954	+	Missense_Mutation	SNP	T	T	A			TCGA-WK-A8XY-01A-11D-A37C-09	TCGA-WK-A8XY-10A-01D-A37F-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec1ddc84-64c1-4852-a98e-5a8406e0df9a	d9bcdaa1-d682-4750-a6d0-14155e7e1ac5	X	23410954	23410954	T	A	SNP	PTCHD1	ENST00000379361	human	ensembl	74_37	+1	known	missense	c.1319	p.F440Y	1.000	pfam_Patched	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD1	HGNC	ENSG00000165186	tier1	-	-	21	0	0.00	16	20	55.56	76	0	0.00	78	71	47.65
PSG9	0	genome.wustl.edu	37	19	43763053	43763053	+	Missense_Mutation	SNP	C	C	T			TCGA-WK-A8XY-01A-11D-A37C-09	TCGA-WK-A8XY-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec1ddc84-64c1-4852-a98e-5a8406e0df9a	d9bcdaa1-d682-4750-a6d0-14155e7e1ac5	19	43763053	43763053	C	T	SNP	PSG9	ENST00000270077	human	ensembl	74_37	-1	known	missense	c.944	p.R315Q	0.002	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PSG9	HGNC	ENSG00000183668	tier1	rs147249563	-	145	0	0.00	84	92	52.27	33	0	0.00	13	9	40.91
ENSG00000216116	0	genome.wustl.edu	37	3	79633761	79633762	+	R	DEL	GT	GT	-			TCGA-WK-A8XY-01A-11D-A37C-09	TCGA-WK-A8XY-10A-01D-A37F-09	GT	GT	GT	-	GT	GT	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec1ddc84-64c1-4852-a98e-5a8406e0df9a	d9bcdaa1-d682-4750-a6d0-14155e7e1ac5	3	79633761	79633762	GT	-	DEL	ENSG00000216116	ENST00000401297	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.001:0.000	-	-	-	no_errors	AC117479.1	Clone_based_ensembl_gene	ENSG00000216116	tier1			18	0	0.00	17	5	22.73	26	0	0.00	56	8	12.50
TOR1AIP1	0	genome.wustl.edu	37	1	179887358	179887358	+	Frame_Shift_Del	DEL	G	G	-			TCGA-WK-A8XY-01A-11D-A37C-09	TCGA-WK-A8XY-10A-01D-A37F-09	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec1ddc84-64c1-4852-a98e-5a8406e0df9a	d9bcdaa1-d682-4750-a6d0-14155e7e1ac5	1	179887358	179887358	G	-	DEL	TOR1AIP1	ENST00000528443	human	ensembl	74_37	+1	known	frame_shift_del	c.1739	p.G581fs	0.000	pfam_Lamina-ass_polypeptide_CLAP1C	pfam_Lamina-ass_polypeptide_CLAP1C	-	no_errors	TOR1AIP1	HGNC	ENSG00000143337	tier1			9	0	0.00	6	15	71.43	70	0	0.00	74	50	40.32
TMIE	0	genome.wustl.edu	37	3	46751074	46751076	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-WK-A8XY-01A-11D-A37C-09	TCGA-WK-A8XY-10A-01D-A37F-09	AAG	AAG	AAG	-	AAG	AAG	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec1ddc84-64c1-4852-a98e-5a8406e0df9a	d9bcdaa1-d682-4750-a6d0-14155e7e1ac5	3	46751074	46751076	AAG	-	DEL	TMIE	ENST00000326431	human	ensembl	74_37	+1	known	in_frame_del	c.367_369	p.K126in_frame_del	0.074:0.151:0.294	NULL	NULL	-	no_errors	TMIE	HGNC	ENSG00000181585	tier1			29	0	0.00	24	4	14.29	32	0	0.00	81	9	10.00
C10orf71	0	genome.wustl.edu	37	10	50534397	50534397	+	Silent	SNP	G	G	A			TCGA-WK-A8XY-01A-11D-A37C-09	TCGA-WK-A8XY-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec1ddc84-64c1-4852-a98e-5a8406e0df9a	d9bcdaa1-d682-4750-a6d0-14155e7e1ac5	10	50534397	50534397	G	A	SNP	C10orf71	ENST00000374144	human	ensembl	74_37	+1	known	silent	c.3807	p.A1269	0.136	NULL	NULL	-	no_errors	C10orf71	HGNC	ENSG00000177354	tier1	-	-	103	0	0.00	4	42	91.30	31	0	0.00	4	19	82.61
HOXC13	0	genome.wustl.edu	37	12	54333237	54333237	+	Nonsense_Mutation	SNP	C	C	T			TCGA-WK-A8XY-01A-11D-A37C-09	TCGA-WK-A8XY-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec1ddc84-64c1-4852-a98e-5a8406e0df9a	d9bcdaa1-d682-4750-a6d0-14155e7e1ac5	12	54333237	54333237	C	T	SNP	HOXC13	ENST00000243056	human	ensembl	74_37	+1	known	nonsense	c.547	p.Q183*	1.000	NULL	pfam_Homeobox_dom,pfam_HoxA13_N,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	HOXC13	HGNC	ENSG00000123364	tier1	-	-	33	0	0.00	7	29	80.56	39	0	0.00	1	13	92.86
PIEZO1	0	genome.wustl.edu	37	16	88808709	88808709	+	Silent	SNP	G	G	A			TCGA-WK-A8XY-01A-11D-A37C-09	TCGA-WK-A8XY-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec1ddc84-64c1-4852-a98e-5a8406e0df9a	d9bcdaa1-d682-4750-a6d0-14155e7e1ac5	16	88808709	88808709	G	A	SNP	PIEZO1	ENST00000301015	human	ensembl	74_37	-1	novel	silent	c.282	p.S94	0.990	NULL	pfam_Piezo	-	no_errors	PIEZO1	HGNC	ENSG00000103335	tier1	-	-	42	0	0.00	6	21	77.78	20	0	0.00	1	12	85.71
POU3F2	0	genome.wustl.edu	37	6	99283560	99283560	+	Missense_Mutation	SNP	G	G	A			TCGA-WK-A8XY-01A-11D-A37C-09	TCGA-WK-A8XY-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec1ddc84-64c1-4852-a98e-5a8406e0df9a	d9bcdaa1-d682-4750-a6d0-14155e7e1ac5	6	99283560	99283560	G	A	SNP	POU3F2	ENST00000328345	human	ensembl	74_37	+1	known	missense	c.811	p.E271K	1.000	pirsf_Transcription_factor_POU,pfam_POU_specific,superfamily_Lambda_D-bd_dom,smart_POU_specific,pfscan_POU_specific	pirsf_Transcription_factor_POU,pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_D-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU	-	no_errors	POU3F2	HGNC	ENSG00000184486	tier1	-	-	54	0	0.00	13	32	71.11	25	0	0.00	4	21	84.00
PTEN	0	genome.wustl.edu	37	10	89653790	89653790	+	Frame_Shift_Del	DEL	C	C	-			TCGA-WK-A8XY-01A-11D-A37C-09	TCGA-WK-A8XY-10A-01D-A37F-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec1ddc84-64c1-4852-a98e-5a8406e0df9a	d9bcdaa1-d682-4750-a6d0-14155e7e1ac5	10	89653790	89653790	C	-	DEL	PTEN	ENST00000371953	human	ensembl	74_37	+1	known	frame_shift_del	c.88	p.P30fs	1.000	smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_dom,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862	tier1			39	0	0.00	4	19	82.61	33	0	0.00	6	33	84.62
SH3TC1	0	genome.wustl.edu	37	4	8229906	8229906	+	Missense_Mutation	SNP	G	G	C			TCGA-WK-A8XY-01A-11D-A37C-09	TCGA-WK-A8XY-10A-01D-A37F-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec1ddc84-64c1-4852-a98e-5a8406e0df9a	d9bcdaa1-d682-4750-a6d0-14155e7e1ac5	4	8229906	8229906	G	C	SNP	SH3TC1	ENST00000245105	human	ensembl	74_37	+1	known	missense	c.2485	p.V829L	0.598	NULL	superfamily_SH3_domain,smart_SH3_domain,smart_TPR_repeat,pfscan_SH3_domain	-	no_errors	SH3TC1	HGNC	ENSG00000125089	tier1	-	-	27	0	0.00	2	18	90.00	22	0	0.00	1	10	90.91
TP53	0	genome.wustl.edu	37	17	7578176	7578176	+	Splice_Site	SNP	C	C	A			TCGA-WK-A8XY-01A-11D-A37C-09	TCGA-WK-A8XY-10A-01D-A37F-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec1ddc84-64c1-4852-a98e-5a8406e0df9a	d9bcdaa1-d682-4750-a6d0-14155e7e1ac5	17	7578176	7578176	C	A	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	splice_site	c.672+1	e5+1	1.000	-	-	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	-	-	37	0	0.00	2	35	94.59	127	0	0.00	7	54	88.52
TRPM3	0	genome.wustl.edu	37	9	73376522	73376522	+	Nonsense_Mutation	SNP	C	C	A			TCGA-WK-A8XY-01A-11D-A37C-09	TCGA-WK-A8XY-10A-01D-A37F-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec1ddc84-64c1-4852-a98e-5a8406e0df9a	d9bcdaa1-d682-4750-a6d0-14155e7e1ac5	9	73376522	73376522	C	A	SNP	TRPM3	ENST00000423814	human	ensembl	74_37	-1	known	nonsense	c.1348	p.E450*	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM3	HGNC	ENSG00000083067	tier1	-	-	41	0	0.00	36	4	10.00	119	0	0.00	182	15	7.58
ZZZ3	0	genome.wustl.edu	37	1	78030138	78030139	+	R	INS	-	-	A			TCGA-WK-A8XY-01A-11D-A37C-09	TCGA-WK-A8XY-10A-01D-A37F-09	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ec1ddc84-64c1-4852-a98e-5a8406e0df9a	d9bcdaa1-d682-4750-a6d0-14155e7e1ac5	1	78030138	78030139	-	A	INS	ZZZ3	ENST00000481346	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.012:0.000	-	-	-	no_errors	ZZZ3	HGNC	ENSG00000036549	tier1			15	0	0.00	24	6	20.00	50	1	1.96	103	8	7.21
F12	0	genome.wustl.edu	37	5	176830374	176830374	+	Missense_Mutation	SNP	G	G	A			TCGA-WK-A8XY-01A-11D-A37C-09	TCGA-WK-A8XY-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ec1ddc84-64c1-4852-a98e-5a8406e0df9a	d9bcdaa1-d682-4750-a6d0-14155e7e1ac5	5	176830374	176830374	G	A	SNP	F12	ENST00000253496	human	ensembl	74_37	-1	known	missense	c.1412	p.A471V	0.000	pirsf_Coagulation_fac_XIIa/HGFA,pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Peptidase_S1	pirsf_Coagulation_fac_XIIa/HGFA,pfam_Peptidase_S1,pfam_Kringle,pfam_FN_type2_col-bd,pfam_EG-like_dom,pfam_Fibronectin_type1,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_FN_type2_col-bd,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Fibronectin_type1,smart_Kringle,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_EG-like_dom,pfscan_Fibronectin_type1,pfscan_FN_type2_col-bd,pfscan_Kringle,pfscan_Peptidase_S1	-	no_errors	F12	HGNC	ENSG00000131187	tier1	-	-	41	0	0.00	36	4	10.00	15	0	0.00	8	0	0.00
NEFM	0	genome.wustl.edu	37	8	24772312	24772312	+	Missense_Mutation	SNP	G	G	A			TCGA-WK-A8XY-01A-11D-A37C-09	TCGA-WK-A8XY-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ec1ddc84-64c1-4852-a98e-5a8406e0df9a	d9bcdaa1-d682-4750-a6d0-14155e7e1ac5	8	24772312	24772312	G	A	SNP	NEFM	ENST00000221166	human	ensembl	74_37	+1	known	missense	c.1006	p.G336S	1.000	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	pfam_IF,pfam_Intermed_filament_D-bd,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	NEFM	HGNC	ENSG00000104722	tier1	rs56902012	-	18	0	0.00	11	12	52.17	6	0	0.00	3	0	0.00
GPR125	0	genome.wustl.edu	37	4	22517302	22517304	+	In_Frame_Del	DEL	CGC	CGC	-			TCGA-WK-A8XY-01A-11D-A37C-09	TCGA-WK-A8XY-10A-01D-A37F-09	CGC	CGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ec1ddc84-64c1-4852-a98e-5a8406e0df9a	d9bcdaa1-d682-4750-a6d0-14155e7e1ac5	4	22517302	22517304	CGC	-	DEL	GPR125	ENST00000334304	human	ensembl	74_37	-1	known	in_frame_del	c.106_104	p.G35in_frame_del	0.040:0.037:0.033	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_GPCR_2_extracellular_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,pfscan_Ig-like_dom	-	no_errors	GPR125	HGNC	ENSG00000152990	tier1			46	0	0.00	27	3	10.00	0	0	0.00	1	0	0.00
GRAMD1A	0	genome.wustl.edu	37	19	35491315	35491319	+	R	DEL	CCGCG	CCGCG	-			TCGA-WK-A8XY-01A-11D-A37C-09	TCGA-WK-A8XY-10A-01D-A37F-09	CCGCG	CCGCG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ec1ddc84-64c1-4852-a98e-5a8406e0df9a	d9bcdaa1-d682-4750-a6d0-14155e7e1ac5	19	35491315	35491319	CCGCG	-	DEL	GRAMD1A	ENST00000603669	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.983:0.943:0.936:0.899:0.860	-	-	-	no_errors	GRAMD1A	HGNC	ENSG00000089351	tier1			0	0	0.00	0	0	0.00	0	0	0.00	0	0	0.00
LTBP3	0	genome.wustl.edu	37	11	65325325	65325326	+	In_Frame_Ins	INS	-	-	CAGCAG			TCGA-WK-A8XY-01A-11D-A37C-09	TCGA-WK-A8XY-10A-01D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ec1ddc84-64c1-4852-a98e-5a8406e0df9a	d9bcdaa1-d682-4750-a6d0-14155e7e1ac5	11	65325325	65325326	-	CAGCAG	INS	LTBP3	ENST00000301873	human	ensembl	74_37	-1	known	in_frame_ins	c.106_105	p.35in_frame_insLL	1.000:0.996	NULL	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	LTBP3	HGNC	ENSG00000168056	tier1			0	0	0.00	0	0	0.00	0	0	0.00	0	0	0.00
RN7SL417P	0	genome.wustl.edu	37	15	84949016	84949016	+	R	SNP	G	G	C			TCGA-WK-A8XY-01A-11D-A37C-09	TCGA-WK-A8XY-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ec1ddc84-64c1-4852-a98e-5a8406e0df9a	d9bcdaa1-d682-4750-a6d0-14155e7e1ac5	15	84949016	84949016	G	C	SNP	RN7SL417P	ENST00000459938	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.044	-	-	-	no_errors	RN7SL417P	HGNC	ENSG00000244056	tier1	-	-	15	0	0.00	12	10	45.45	0	0	0.00	0	0	0.00
SNORD3A	0	genome.wustl.edu	37	17	19091699	19091699	+	R	SNP	T	T	A			TCGA-WK-A8XY-01A-11D-A37C-09	TCGA-WK-A8XY-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ec1ddc84-64c1-4852-a98e-5a8406e0df9a	d9bcdaa1-d682-4750-a6d0-14155e7e1ac5	17	19091699	19091699	T	A	SNP	SNORD3A	ENST00000584923	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNORD3A	HGNC	ENSG00000263934	tier1	rs202002668	-	13	0	0.00	27	10	27.03	2	0	0.00	7	0	0.00
SYTL1	0	genome.wustl.edu	37	1	27679961	27679961	+	Missense_Mutation	SNP	C	C	A			TCGA-WK-A8XY-01A-11D-A37C-09	TCGA-WK-A8XY-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ec1ddc84-64c1-4852-a98e-5a8406e0df9a	d9bcdaa1-d682-4750-a6d0-14155e7e1ac5	1	27679961	27679961	C	A	SNP	SYTL1	ENST00000543823	human	ensembl	74_37	+1	known	missense	c.1531	p.R511S	1.000	superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,smart_C2_dom,pfscan_C2_dom,pfscan_Znf_FYVE-typ	-	no_errors	SYTL1	HGNC	ENSG00000142765	tier1	-	-	23	0	0.00	16	14	46.67	4	0	0.00	8	2	20.00
CENPE	0	genome.wustl.edu	37	4	104062023	104062023	+	Missense_Mutation	SNP	A	A	T			TCGA-WK-A8XY-01A-11D-A37C-09	TCGA-WK-A8XY-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ec1ddc84-64c1-4852-a98e-5a8406e0df9a	d9bcdaa1-d682-4750-a6d0-14155e7e1ac5	4	104062023	104062023	A	T	SNP	CENPE	ENST00000265148	human	ensembl	74_37	-1	known	missense	c.5702	p.L1901H	0.606	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,superfamily_STAT_TF_coiled-coil,superfamily_Signal_recog_particl_SRP54_hlx,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	CENPE	HGNC	ENSG00000138778	tier1	-	-	36	0	0.00	41	4	8.89	81	0	0.00	122	2	1.61
ENSG00000254913	0	genome.wustl.edu	37	1	144877290	144877304	+	Splice_Site	DEL	GGAAAGAGTAAGTAT	GGAAAGAGTAAGTAT	-			TCGA-WK-A8XY-01A-11D-A37C-09	TCGA-WK-A8XY-10A-01D-A37F-09	GGAAAGAGTAAGTAT	GGAAAGAGTAAGTAT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ec1ddc84-64c1-4852-a98e-5a8406e0df9a	d9bcdaa1-d682-4750-a6d0-14155e7e1ac5	1	144877290	144877304	GGAAAGAGTAAGTAT	-	DEL	ENSG00000254913	ENST00000531288	human	ensembl	74_37	+1	known	splice_site_del	c.NULL	NULL	0.000:0.000:0.001:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.001:0.003:0.000:0.000	-	-	-	no_errors	RP4-791M13.5	Clone_based_vega_gene	ENSG00000254913	tier1			45	0	0.00	60	3	4.76	45	0	0.00	60	3	4.76
