Pipeline Input Name	Archive Result File REF	Comment [TCGA Archive Name]	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
samplestamp	normalized.STAD.2016_01_28__00_00_08.samplestamp.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00312:108	Clinical_Pick_Tier1_2016012800	STAD.clin.merged.picked.txt	ClinicalPick	Level_4	text	gdac.broadinstitute.org_STAD.Clinical_Pick_Tier1.Level_4.2016012800.0.0	yes
samplestamp	normalized.STAD.2016_01_28__00_00_08.samplestamp.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00312:108	Clinical_Pick_Tier1_2016012800	All_CDEs.txt	Clinical	Level_4	text	gdac.broadinstitute.org_STAD.Clinical_Pick_Tier1.Level_4.2016012800.0.0	yes
samplestamp	normalized.STAD.2016_01_28__00_00_08.samplestamp.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00312:108	Clinical_Pick_Tier1_2016012800	stage3_params_clin_selection_STAD.tsv	ClinicalPick	Level_4	text	gdac.broadinstitute.org_STAD.Clinical_Pick_Tier1.Level_4.2016012800.0.0	yes
stage2File	STAD.clin.merged.txt	gdac.broadinstitute.org_STAD.Merge_Clinical.Level_1.2016012800.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00312:108	Clinical_Pick_Tier1_2016012800	STAD.clin.merged.picked.txt	ClinicalPick	Level_4	text	gdac.broadinstitute.org_STAD.Clinical_Pick_Tier1.Level_4.2016012800.0.0	yes
stage2File	STAD.clin.merged.txt	gdac.broadinstitute.org_STAD.Merge_Clinical.Level_1.2016012800.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00312:108	Clinical_Pick_Tier1_2016012800	All_CDEs.txt	Clinical	Level_4	text	gdac.broadinstitute.org_STAD.Clinical_Pick_Tier1.Level_4.2016012800.0.0	yes
stage2File	STAD.clin.merged.txt	gdac.broadinstitute.org_STAD.Merge_Clinical.Level_1.2016012800.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00312:108	Clinical_Pick_Tier1_2016012800	stage3_params_clin_selection_STAD.tsv	ClinicalPick	Level_4	text	gdac.broadinstitute.org_STAD.Clinical_Pick_Tier1.Level_4.2016012800.0.0	yes
