Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
TADA1	0	genome.wustl.edu	37	1	166829516	166829516	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4183-01A-02D-1126-08	TCGA-BR-4183-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	08e915c4-e7ca-40b9-9175-8967169c7019	f03b244a-cd1c-4101-b0fe-2ced7638bb2a	1	166829516	166829516	C	T	SNP	TADA1	ENST00000367874	human	ensembl	74_37	-1	known	missense	c.599	p.R200Q	1.000	NULL	superfamily_Histone-fold	-	no_errors	TADA1	HGNC	ENSG00000152382				71	0	0	63	11	14.8649
CACNA1E	0	genome.wustl.edu	37	1	181695296	181695296	+	Silent	SNP	C	C	T			TCGA-BR-4183-01A-02D-1126-08	TCGA-BR-4183-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	08e915c4-e7ca-40b9-9175-8967169c7019	f03b244a-cd1c-4101-b0fe-2ced7638bb2a	1	181695296	181695296	C	T	SNP	CACNA1E	ENST00000367573	human	ensembl	74_37	+1	known	silent	c.2238	p.I746	0.993	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216				23	0	0	24	6	20
CACNA1E	0	genome.wustl.edu	37	1	181724463	181724463	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4183-01A-02D-1126-08	TCGA-BR-4183-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	08e915c4-e7ca-40b9-9175-8967169c7019	f03b244a-cd1c-4101-b0fe-2ced7638bb2a	1	181724463	181724463	G	A	SNP	CACNA1E	ENST00000367573	human	ensembl	74_37	+1	known	missense	c.3919	p.A1307T	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216				169	0	0	148	35	19.1257
LRRN2	0	genome.wustl.edu	37	1	204587180	204587180	+	Silent	SNP	C	C	T			TCGA-BR-4183-01A-02D-1126-08	TCGA-BR-4183-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	08e915c4-e7ca-40b9-9175-8967169c7019	f03b244a-cd1c-4101-b0fe-2ced7638bb2a	1	204587180	204587180	C	T	SNP	LRRN2	ENST00000367175	human	ensembl	74_37	-1	known	silent	c.1941	p.A647	0.039	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRN2	HGNC	ENSG00000170382				24	0	0	31	4	11.4286
OR2T12	0	genome.wustl.edu	37	1	248457952	248457952	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4183-01A-02D-1126-08	TCGA-BR-4183-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	08e915c4-e7ca-40b9-9175-8967169c7019	f03b244a-cd1c-4101-b0fe-2ced7638bb2a	1	248457952	248457952	T	G	SNP	OR2T12	ENST00000317996	human	ensembl	74_37	-1	known	missense	c.929	p.K310T	0.008	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T12	HGNC	ENSG00000177201				218	0	0	166	26	13.5417
TMPRSS13	0	genome.wustl.edu	37	11	117789342	117789342	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4183-01A-02D-1126-08	TCGA-BR-4183-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	08e915c4-e7ca-40b9-9175-8967169c7019	f03b244a-cd1c-4101-b0fe-2ced7638bb2a	11	117789342	117789342	T	C	SNP	TMPRSS13	ENST00000445164	human	ensembl	74_37	-1	known	missense	c.233	p.Q78R	0.000	pirsf_Peptidase_S1A_TMPRSS13	pirsf_Peptidase_S1A_TMPRSS13,pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,superfamily_Srcr_rcpt-rel,superfamily_LDrepeatLR_classA_rpt,smart_Srcr_rcpt-rel,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_SRCR,pfscan_Peptidase_S1	-	no_errors	TMPRSS13	HGNC	ENSG00000137747				21	0	0	10	16	61.5385
SOX6	0	genome.wustl.edu	37	11	16340111	16340111	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4183-01A-02D-1126-08	TCGA-BR-4183-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	08e915c4-e7ca-40b9-9175-8967169c7019	f03b244a-cd1c-4101-b0fe-2ced7638bb2a	11	16340111	16340111	C	T	SNP	SOX6	ENST00000352083	human	ensembl	74_37	-1	known	missense	c.326	p.R109H	1.000	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX6	HGNC	ENSG00000110693				171	1	0.581395	102	16	13.5593
OSBPL5	0	genome.wustl.edu	37	11	3114795	3114795	+	Silent	SNP	C	C	T			TCGA-BR-4183-01A-02D-1126-08	TCGA-BR-4183-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	08e915c4-e7ca-40b9-9175-8967169c7019	f03b244a-cd1c-4101-b0fe-2ced7638bb2a	11	3114795	3114795	C	T	SNP	OSBPL5	ENST00000263650	human	ensembl	74_37	-1	known	silent	c.1908	p.T636	0.790	pfam_Oxysterol-bd	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL5	HGNC	ENSG00000021762				79	0	0	36	6	14.2857
EHBP1L1	0	genome.wustl.edu	37	11	65350742	65350742	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4183-01A-02D-1126-08	TCGA-BR-4183-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	08e915c4-e7ca-40b9-9175-8967169c7019	f03b244a-cd1c-4101-b0fe-2ced7638bb2a	11	65350742	65350742	C	T	SNP	EHBP1L1	ENST00000309295	human	ensembl	74_37	+1	known	missense	c.2599	p.R867C	0.003	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	EHBP1L1	HGNC	ENSG00000173442				36	0	0	28	10	26.3158
ANO6	0	genome.wustl.edu	37	12	45795715	45795715	+	Silent	SNP	G	G	A			TCGA-BR-4183-01A-02D-1126-08	TCGA-BR-4183-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	08e915c4-e7ca-40b9-9175-8967169c7019	f03b244a-cd1c-4101-b0fe-2ced7638bb2a	12	45795715	45795715	G	A	SNP	ANO6	ENST00000425752	human	ensembl	74_37	+1	known	silent	c.1524	p.T508	0.005	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO6	HGNC	ENSG00000177119				165	0	0	159	22	12.1547
ACSM4	0	genome.wustl.edu	37	12	7475048	7475048	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4183-01A-02D-1126-08	TCGA-BR-4183-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	08e915c4-e7ca-40b9-9175-8967169c7019	f03b244a-cd1c-4101-b0fe-2ced7638bb2a	12	7475048	7475048	G	A	SNP	ACSM4	ENST00000399422	human	ensembl	74_37	+1	novel	missense	c.1036	p.G346R	0.977	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM4	HGNC	ENSG00000215009				59	0	0	53	7	11.6667
FRY	0	genome.wustl.edu	37	13	32745282	32745282	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4183-01A-02D-1126-08	TCGA-BR-4183-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	08e915c4-e7ca-40b9-9175-8967169c7019	f03b244a-cd1c-4101-b0fe-2ced7638bb2a	13	32745282	32745282	G	A	SNP	FRY	ENST00000380250	human	ensembl	74_37	+1	known	missense	c.2026	p.D676N	0.998	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FRY	HGNC	ENSG00000073910				88	0	0	84	14	14.2857
OR10G2	0	genome.wustl.edu	37	14	22102168	22102168	+	Silent	SNP	C	C	T			TCGA-BR-4183-01A-02D-1126-08	TCGA-BR-4183-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	08e915c4-e7ca-40b9-9175-8967169c7019	f03b244a-cd1c-4101-b0fe-2ced7638bb2a	14	22102168	22102168	C	T	SNP	OR10G2	ENST00000542433	human	ensembl	74_37	-1	known	silent	c.831	p.A277	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10G2	HGNC	ENSG00000255582				71	0	0	57	10	14.9254
OTX2	0	genome.wustl.edu	37	14	57268588	57268588	+	Silent	SNP	A	A	C			TCGA-BR-4183-01A-02D-1126-08	TCGA-BR-4183-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	08e915c4-e7ca-40b9-9175-8967169c7019	f03b244a-cd1c-4101-b0fe-2ced7638bb2a	14	57268588	57268588	A	C	SNP	OTX2	ENST00000339475	human	ensembl	74_37	-1	known	silent	c.759	p.A253	1.000	NULL	pfam_Otx_TF_C,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Otx2_TF,prints_Otx_TF	-	no_errors	OTX2	HGNC	ENSG00000165588				120	0	0	61	7	10.2941
ATP10A	0	genome.wustl.edu	37	15	25972389	25972389	+	Silent	SNP	G	G	A			TCGA-BR-4183-01A-02D-1126-08	TCGA-BR-4183-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	08e915c4-e7ca-40b9-9175-8967169c7019	f03b244a-cd1c-4101-b0fe-2ced7638bb2a	15	25972389	25972389	G	A	SNP	ATP10A	ENST00000356865	human	ensembl	74_37	-1	known	silent	c.765	p.A255	0.187	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP10A	HGNC	ENSG00000206190				67	0	0	67	5	6.94444
CIB2	0	genome.wustl.edu	37	15	78398116	78398116	+	Silent	SNP	G	G	A			TCGA-BR-4183-01A-02D-1126-08	TCGA-BR-4183-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	08e915c4-e7ca-40b9-9175-8967169c7019	f03b244a-cd1c-4101-b0fe-2ced7638bb2a	15	78398116	78398116	G	A	SNP	CIB2	ENST00000258930	human	ensembl	74_37	-1	known	silent	c.507	p.F169	0.985	smart_EF_hand_dom,pfscan_EF_hand_dom	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	CIB2	HGNC	ENSG00000136425				41	0	0	52	6	10.3448
MYH2	0	genome.wustl.edu	37	17	10428137	10428137	+	Silent	SNP	G	G	A			TCGA-BR-4183-01A-02D-1126-08	TCGA-BR-4183-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	08e915c4-e7ca-40b9-9175-8967169c7019	f03b244a-cd1c-4101-b0fe-2ced7638bb2a	17	10428137	10428137	G	A	SNP	MYH2	ENST00000245503	human	ensembl	74_37	-1	known	silent	c.4908	p.N1636	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_Ribosomal_L29,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH2	HGNC	ENSG00000125414				108	0	0	94	23	19.6581
MKS1	0	genome.wustl.edu	37	17	56293543	56293543	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4183-01A-02D-1126-08	TCGA-BR-4183-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	08e915c4-e7ca-40b9-9175-8967169c7019	f03b244a-cd1c-4101-b0fe-2ced7638bb2a	17	56293543	56293543	C	T	SNP	MKS1	ENST00000393119	human	ensembl	74_37	-1	known	missense	c.323	p.R108H	0.996	NULL	pfam_B9_dom	-	no_errors	MKS1	HGNC	ENSG00000011143				150	0	0	121	19	13.5714
MPO	0	genome.wustl.edu	37	17	56350133	56350133	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4183-01A-02D-1126-08	TCGA-BR-4183-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	08e915c4-e7ca-40b9-9175-8967169c7019	f03b244a-cd1c-4101-b0fe-2ced7638bb2a	17	56350133	56350133	G	A	SNP	MPO	ENST00000340482	human	ensembl	74_37	-1	known	missense	c.1864	p.R622C	1.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	MPO	HGNC	ENSG00000005381				72	0	0	68	11	13.9241
TP53	0	genome.wustl.edu	37	17	7578370	7578370	+	Splice_Site	SNP	C	C	T			TCGA-BR-4183-01A-02D-1126-08	TCGA-BR-4183-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	08e915c4-e7ca-40b9-9175-8967169c7019	f03b244a-cd1c-4101-b0fe-2ced7638bb2a	17	7578370	7578370	C	T	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	splice_site	c.559+1	e4+1	1.000	-	-	-	no_errors	TP53	HGNC	ENSG00000141510				24	0	0	15	4	21.0526
ZNF43	0	genome.wustl.edu	37	19	21991815	21991815	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4183-01A-02D-1126-08	TCGA-BR-4183-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	08e915c4-e7ca-40b9-9175-8967169c7019	f03b244a-cd1c-4101-b0fe-2ced7638bb2a	19	21991815	21991815	A	G	SNP	ZNF43	ENST00000354959	human	ensembl	74_37	-1	known	missense	c.1024	p.Y342H	0.014	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF43	HGNC	ENSG00000198521				89	0	0	88	8	8.33333
PSG8	0	genome.wustl.edu	37	19	43258502	43258502	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4183-01A-02D-1126-08	TCGA-BR-4183-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	08e915c4-e7ca-40b9-9175-8967169c7019	f03b244a-cd1c-4101-b0fe-2ced7638bb2a	19	43258502	43258502	A	T	SNP	PSG8	ENST00000306511	human	ensembl	74_37	-1	known	missense	c.1226	p.M409K	0.001	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PSG8	HGNC	ENSG00000124467				314	0	0	268	76	22.093
CACNG6	0	genome.wustl.edu	37	19	54502911	54502911	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4183-01A-02D-1126-08	TCGA-BR-4183-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	08e915c4-e7ca-40b9-9175-8967169c7019	f03b244a-cd1c-4101-b0fe-2ced7638bb2a	19	54502911	54502911	A	G	SNP	CACNG6	ENST00000252729	human	ensembl	74_37	+1	known	missense	c.430	p.I144V	0.498	prints_Claudin	prints_VDCC_g6su,prints_VDCC_gsu,prints_Claudin	-	no_errors	CACNG6	HGNC	ENSG00000130433				233	0	0	252	31	10.9541
MISP	0	genome.wustl.edu	37	19	757262	757262	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4183-01A-02D-1126-08	TCGA-BR-4183-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	08e915c4-e7ca-40b9-9175-8967169c7019	f03b244a-cd1c-4101-b0fe-2ced7638bb2a	19	757262	757262	C	T	SNP	MISP	ENST00000215582	human	ensembl	74_37	+1	known	missense	c.316	p.R106C	0.001	NULL	NULL	-	no_errors	MISP	HGNC	ENSG00000099812				18	0	0	19	4	17.3913
UGGT1	0	genome.wustl.edu	37	2	128922385	128922385	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4183-01A-02D-1126-08	TCGA-BR-4183-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	08e915c4-e7ca-40b9-9175-8967169c7019	f03b244a-cd1c-4101-b0fe-2ced7638bb2a	2	128922385	128922385	T	G	SNP	UGGT1	ENST00000259253	human	ensembl	74_37	+1	known	missense	c.2907	p.F969L	0.999	pfam_UDP-g_GGtrans	pfam_UDP-g_GGtrans	-	no_errors	UGGT1	HGNC	ENSG00000136731				60	0	0	37	9	19.5652
TTN	0	genome.wustl.edu	37	2	179424587	179424587	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4183-01A-02D-1126-08	TCGA-BR-4183-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	08e915c4-e7ca-40b9-9175-8967169c7019	f03b244a-cd1c-4101-b0fe-2ced7638bb2a	2	179424587	179424587	T	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.78568	p.S26190G	1.000	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				157	1	0.632911	159	16	9.14286
FAM179A	0	genome.wustl.edu	37	2	29268228	29268228	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4183-01A-02D-1126-08	TCGA-BR-4183-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	08e915c4-e7ca-40b9-9175-8967169c7019	f03b244a-cd1c-4101-b0fe-2ced7638bb2a	2	29268228	29268228	C	T	SNP	FAM179A	ENST00000379558	human	ensembl	74_37	+1	known	missense	c.2674	p.R892C	0.976	superfamily_ARM-type_fold	pfam_CLASP_N_dom,superfamily_ARM-type_fold	-	no_errors	FAM179A	HGNC	ENSG00000189350				102	0	0	62	19	23.4568
ALLC	0	genome.wustl.edu	37	2	3749215	3749215	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4183-01A-02D-1126-08	TCGA-BR-4183-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	08e915c4-e7ca-40b9-9175-8967169c7019	f03b244a-cd1c-4101-b0fe-2ced7638bb2a	2	3749215	3749215	C	T	SNP	ALLC	ENST00000252505	human	ensembl	74_37	+1	known	missense	c.964	p.P322S	0.922	pfam_Allantoicase_dom,superfamily_Galactose-bd-like,tigrfam_Allantoicase	pfam_Allantoicase_dom,superfamily_Galactose-bd-like,tigrfam_Allantoicase	-	no_errors	ALLC	HGNC	ENSG00000151360				41	0	0	26	6	18.75
POLR1A	0	genome.wustl.edu	37	2	86308050	86308050	+	Silent	SNP	C	C	T			TCGA-BR-4183-01A-02D-1126-08	TCGA-BR-4183-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	08e915c4-e7ca-40b9-9175-8967169c7019	f03b244a-cd1c-4101-b0fe-2ced7638bb2a	2	86308050	86308050	C	T	SNP	POLR1A	ENST00000263857	human	ensembl	74_37	-1	known	silent	c.975	p.T325	0.009	pfam_RNA_pol_Rpb1_1,smart_RNA_pol_N	pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,pfam_RNA_pol_Rpb1_1,smart_RNA_pol_N	-	no_errors	POLR1A	HGNC	ENSG00000068654				78	0	0	90	10	10
DIDO1	0	genome.wustl.edu	37	20	61513050	61513050	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4183-01A-02D-1126-08	TCGA-BR-4183-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	08e915c4-e7ca-40b9-9175-8967169c7019	f03b244a-cd1c-4101-b0fe-2ced7638bb2a	20	61513050	61513050	C	T	SNP	DIDO1	ENST00000266070	human	ensembl	74_37	-1	known	missense	c.4258	p.E1420K	0.410	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	DIDO1	HGNC	ENSG00000101191				125	0	0	107	11	9.32203
UFD1L	0	genome.wustl.edu	37	22	19445627	19445627	+	Silent	SNP	G	G	A			TCGA-BR-4183-01A-02D-1126-08	TCGA-BR-4183-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	08e915c4-e7ca-40b9-9175-8967169c7019	f03b244a-cd1c-4101-b0fe-2ced7638bb2a	22	19445627	19445627	G	A	SNP	UFD1L	ENST00000263202	human	ensembl	74_37	-1	known	silent	c.531	p.D177	0.998	pfam_UFD1	pfam_UFD1	-	no_errors	UFD1L	HGNC	ENSG00000070010				95	0	0	54	11	16.9231
PISD	0	genome.wustl.edu	37	22	32017095	32017095	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4183-01A-02D-1126-08	TCGA-BR-4183-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	08e915c4-e7ca-40b9-9175-8967169c7019	f03b244a-cd1c-4101-b0fe-2ced7638bb2a	22	32017095	32017095	A	G	SNP	PISD	ENST00000439502	human	ensembl	74_37	-1	known	missense	c.731	p.V244A	1.000	pfam_PS_Dcarbxylase,tigrfam_PS_decarb	pfam_PS_Dcarbxylase,tigrfam_PS_decarb	-	no_errors	PISD	HGNC	ENSG00000241878				55	0	0	28	8	22.2222
SREBF2	0	genome.wustl.edu	37	22	42271622	42271622	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4183-01A-02D-1126-08	TCGA-BR-4183-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	08e915c4-e7ca-40b9-9175-8967169c7019	f03b244a-cd1c-4101-b0fe-2ced7638bb2a	22	42271622	42271622	A	G	SNP	SREBF2	ENST00000361204	human	ensembl	74_37	+1	known	missense	c.1280	p.N427S	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	SREBF2	HGNC	ENSG00000198911				157	1	0.632911	140	18	11.3924
TP63	0	genome.wustl.edu	37	3	189612028	189612028	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4183-01A-02D-1126-08	TCGA-BR-4183-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	08e915c4-e7ca-40b9-9175-8967169c7019	f03b244a-cd1c-4101-b0fe-2ced7638bb2a	3	189612028	189612028	C	T	SNP	TP63	ENST00000264731	human	ensembl	74_37	+1	known	nonsense	c.1780	p.R594*	1.000	pfam_SAM_2,superfamily_SAM/pointed,smart_SAM	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_SAM_2,superfamily_p53-like_TF_DNA-bd,superfamily_SAM/pointed,superfamily_p53_tetrameristn,smart_SAM,prints_p53_tumour_suppressor	-	no_errors	TP63	HGNC	ENSG00000073282				74	0	0	55	10	15.3846
RARB	0	genome.wustl.edu	37	3	25637920	25637920	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4183-01A-02D-1126-08	TCGA-BR-4183-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	08e915c4-e7ca-40b9-9175-8967169c7019	f03b244a-cd1c-4101-b0fe-2ced7638bb2a	3	25637920	25637920	G	C	SNP	RARB	ENST00000404969	human	ensembl	74_37	+1	known	missense	c.1181	p.R394P	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,prints_Retinoic_acid_rcpt,prints_Nuc_orph_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Nuc_orph_rcpt,prints_Retinoid-X_rcpt/HNF4	-	no_errors	RARB	HGNC	ENSG00000077092				110	0	0	95	18	15.9292
COL7A1	0	genome.wustl.edu	37	3	48629354	48629354	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4183-01A-02D-1126-08	TCGA-BR-4183-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	08e915c4-e7ca-40b9-9175-8967169c7019	f03b244a-cd1c-4101-b0fe-2ced7638bb2a	3	48629354	48629354	C	T	SNP	COL7A1	ENST00000328333	human	ensembl	74_37	-1	known	missense	c.1334	p.R445Q	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Collagen,pfam_Fibronectin_type3,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL7A1	HGNC	ENSG00000114270				76	0	0	39	7	15.2174
LAMB2	0	genome.wustl.edu	37	3	49159423	49159423	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4183-01A-02D-1126-08	TCGA-BR-4183-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	08e915c4-e7ca-40b9-9175-8967169c7019	f03b244a-cd1c-4101-b0fe-2ced7638bb2a	3	49159423	49159423	C	T	SNP	LAMB2	ENST00000305544	human	ensembl	74_37	-1	known	missense	c.4877	p.R1626Q	0.000	NULL	pfam_EGF_laminin,pfam_Laminin_N,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB2	HGNC	ENSG00000172037				76	0	0	42	17	28.8136
ITIH1	0	genome.wustl.edu	37	3	52824909	52824909	+	Silent	SNP	G	G	A			TCGA-BR-4183-01A-02D-1126-08	TCGA-BR-4183-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	08e915c4-e7ca-40b9-9175-8967169c7019	f03b244a-cd1c-4101-b0fe-2ced7638bb2a	3	52824909	52824909	G	A	SNP	ITIH1	ENST00000273283	human	ensembl	74_37	+1	known	silent	c.2466	p.R822	0.290	pfam_ITI_HC_C,superfamily_PsdUridine_synth_cat_dom	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,superfamily_PsdUridine_synth_cat_dom,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH1	HGNC	ENSG00000055957				95	0	0	71	13	15.4762
ZNF732	0	genome.wustl.edu	37	4	266387	266387	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4183-01A-02D-1126-08	TCGA-BR-4183-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	08e915c4-e7ca-40b9-9175-8967169c7019	f03b244a-cd1c-4101-b0fe-2ced7638bb2a	4	266387	266387	G	A	SNP	ZNF732	ENST00000419098	human	ensembl	74_37	-1	known	missense	c.259	p.P87S	0.181	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF732	HGNC	ENSG00000186777				23	0	0	24	2	7.69231
NUP54	0	genome.wustl.edu	37	4	77065318	77065318	+	Silent	SNP	C	C	T			TCGA-BR-4183-01A-02D-1126-08	TCGA-BR-4183-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	08e915c4-e7ca-40b9-9175-8967169c7019	f03b244a-cd1c-4101-b0fe-2ced7638bb2a	4	77065318	77065318	C	T	SNP	NUP54	ENST00000264883	human	ensembl	74_37	-1	known	silent	c.279	p.Q93	1.000	NULL	NULL	-	no_errors	NUP54	HGNC	ENSG00000138750				251	0	0	219	34	13.4387
PCDHB7	0	genome.wustl.edu	37	5	140553745	140553745	+	Silent	SNP	C	C	T			TCGA-BR-4183-01A-02D-1126-08	TCGA-BR-4183-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	08e915c4-e7ca-40b9-9175-8967169c7019	f03b244a-cd1c-4101-b0fe-2ced7638bb2a	5	140553745	140553745	C	T	SNP	PCDHB7	ENST00000231137	human	ensembl	74_37	+1	known	silent	c.1329	p.D443	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB7	HGNC	ENSG00000113212				244	1	0.408163	138	24	14.8148
RAET1E	0	genome.wustl.edu	37	6	150211239	150211239	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4183-01A-02D-1126-08	TCGA-BR-4183-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	08e915c4-e7ca-40b9-9175-8967169c7019	f03b244a-cd1c-4101-b0fe-2ced7638bb2a	6	150211239	150211239	G	A	SNP	RAET1E	ENST00000357183	human	ensembl	74_37	-1	known	missense	c.128	p.S43F	0.005	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	-	no_errors	RAET1E	HGNC	ENSG00000164520				52	0	0	74	7	8.64198
SRRT	0	genome.wustl.edu	37	7	100481989	100481989	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4183-01A-02D-1126-08	TCGA-BR-4183-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	08e915c4-e7ca-40b9-9175-8967169c7019	f03b244a-cd1c-4101-b0fe-2ced7638bb2a	7	100481989	100481989	C	T	SNP	SRRT	ENST00000388793	human	ensembl	74_37	+1	known	missense	c.758	p.A253V	1.000	pfam_DUF3546	pfam_Arsenite-R_2,pfam_DUF3546	-	no_errors	SRRT	HGNC	ENSG00000087087				22	0	0	29	3	9.375
ATP6V0A4	0	genome.wustl.edu	37	7	138447716	138447716	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4183-01A-02D-1126-08	TCGA-BR-4183-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	08e915c4-e7ca-40b9-9175-8967169c7019	f03b244a-cd1c-4101-b0fe-2ced7638bb2a	7	138447716	138447716	C	T	SNP	ATP6V0A4	ENST00000310018	human	ensembl	74_37	-1	known	missense	c.346	p.A116T	1.000	pfam_V-ATPase_116kDa_su	pfam_V-ATPase_116kDa_su	-	no_errors	ATP6V0A4	HGNC	ENSG00000105929				110	0	0	82	9	9.89011
CRHR2	0	genome.wustl.edu	37	7	30695259	30695259	+	Silent	SNP	G	G	A			TCGA-BR-4183-01A-02D-1126-08	TCGA-BR-4183-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	08e915c4-e7ca-40b9-9175-8967169c7019	f03b244a-cd1c-4101-b0fe-2ced7638bb2a	7	30695259	30695259	G	A	SNP	CRHR2	ENST00000348438	human	ensembl	74_37	-1	known	silent	c.1071	p.P357	0.354	pfam_GPCR_2_secretin-like,prints_GPCR_2_CRF_rcpt,prints_GPCR_2_diuretic_rcpt,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,prints_GPCR_2_CRF_rcpt,prints_GPCR_2_secretin-like,prints_GPCR_2_CRF2_rcpt,prints_GPCR_2_diuretic_rcpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	CRHR2	HGNC	ENSG00000106113				151	0	0	108	16	12.9032
RANBP6	0	genome.wustl.edu	37	9	6015394	6015394	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4183-01A-02D-1126-08	TCGA-BR-4183-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	08e915c4-e7ca-40b9-9175-8967169c7019	f03b244a-cd1c-4101-b0fe-2ced7638bb2a	9	6015394	6015394	C	T	SNP	RANBP6	ENST00000259569	human	ensembl	74_37	-1	known	missense	c.214	p.A72T	1.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	RANBP6	HGNC	ENSG00000137040				125	1	0.793651	90	16	15.0943
LAMP2	0	genome.wustl.edu	37	X	119575715	119575715	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4183-01A-02D-1126-08	TCGA-BR-4183-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	08e915c4-e7ca-40b9-9175-8967169c7019	f03b244a-cd1c-4101-b0fe-2ced7638bb2a	X	119575715	119575715	C	G	SNP	LAMP2	ENST00000434600	human	ensembl	74_37	-1	known	missense	c.963	p.W321C	1.000	pfam_Lysosome-assoc_membr_glycop	pfam_Lysosome-assoc_membr_glycop,prints_Lysosome-assoc_membr_glycop	-	no_errors	LAMP2	HGNC	ENSG00000005893				132	0	0	93	16	14.6789
FRMD7	0	genome.wustl.edu	37	X	131212786	131212786	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4183-01A-02D-1126-08	TCGA-BR-4183-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	08e915c4-e7ca-40b9-9175-8967169c7019	f03b244a-cd1c-4101-b0fe-2ced7638bb2a	X	131212786	131212786	T	C	SNP	FRMD7	ENST00000298542	human	ensembl	74_37	-1	known	missense	c.1259	p.D420G	0.461	NULL	pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM-adjacent,pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,prints_Band_41_fam,pfscan_FERM_domain	-	no_errors	FRMD7	HGNC	ENSG00000165694				213	0	0	182	26	12.5
SH3KBP1	0	genome.wustl.edu	37	X	19725084	19725084	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4183-01A-02D-1126-08	TCGA-BR-4183-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	08e915c4-e7ca-40b9-9175-8967169c7019	f03b244a-cd1c-4101-b0fe-2ced7638bb2a	X	19725084	19725084	C	T	SNP	SH3KBP1	ENST00000397821	human	ensembl	74_37	-1	known	missense	c.305	p.R102Q	1.000	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_p67phox,prints_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SH3KBP1	HGNC	ENSG00000147010				36	0	0	22	5	18.5185
MXRA5	0	genome.wustl.edu	37	X	3229245	3229245	+	Silent	SNP	G	G	A			TCGA-BR-4183-01A-02D-1126-08	TCGA-BR-4183-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	08e915c4-e7ca-40b9-9175-8967169c7019	f03b244a-cd1c-4101-b0fe-2ced7638bb2a	X	3229245	3229245	G	A	SNP	MXRA5	ENST00000217939	human	ensembl	74_37	-1	known	silent	c.6999	p.D2333	0.950	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MXRA5	HGNC	ENSG00000101825				172	1	0.578035	104	23	18.1102
BRWD3	0	genome.wustl.edu	37	X	79975125	79975125	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4183-01A-02D-1126-08	TCGA-BR-4183-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	08e915c4-e7ca-40b9-9175-8967169c7019	f03b244a-cd1c-4101-b0fe-2ced7638bb2a	X	79975125	79975125	C	T	SNP	BRWD3	ENST00000373275	human	ensembl	74_37	-1	known	missense	c.1907	p.G636E	1.000	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quino_amine_DH_bsu,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	BRWD3	HGNC	ENSG00000165288				140	0	0	109	9	7.62712
NAP1L3	0	genome.wustl.edu	37	X	92926799	92926799	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4183-01A-02D-1126-08	TCGA-BR-4183-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	08e915c4-e7ca-40b9-9175-8967169c7019	f03b244a-cd1c-4101-b0fe-2ced7638bb2a	X	92926799	92926799	T	G	SNP	NAP1L3	ENST00000373079	human	ensembl	74_37	-1	known	missense	c.1505	p.K502T	0.003	NULL	pfam_NAP_family	-	no_errors	NAP1L3	HGNC	ENSG00000186310				42	0	0	41	8	16.3265
ALG10	0	genome.wustl.edu	37	12	34179403	34179404	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4183-01A-02D-1126-08	TCGA-BR-4183-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	08e915c4-e7ca-40b9-9175-8967169c7019	f03b244a-cd1c-4101-b0fe-2ced7638bb2a	12	34179403	34179404	-	T	INS	ALG10	ENST00000266483	human	ensembl	74_37	+1	known	frame_shift_ins	c.975_976	p.V327fs	0.003:0.069	pfam_Alg10,pirsf_Alg10	pfam_Alg10,pirsf_Alg10	-	no_errors	ALG10	HGNC	ENSG00000139133				177	0	0	197	17	7.94393
