Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
AGL	0	genome.wustl.edu	37	1	100340251	100340251	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	100340251	100340251	C	T	SNP	AGL	ENST00000294724	human	ensembl	74_37	+1	known	nonsense	c.967	p.R323*	0.081	superfamily_Glycoside_hydrolase_SF,tigrfam_Glycogen_debranch_met	pfam_AGL/Gdb1,superfamily_6-hairpin_glycosidase-like,superfamily_Glycoside_hydrolase_SF,tigrfam_Glycogen_debranch_met	-	no_errors	AGL	HGNC	ENSG00000162688				36	0	0	38	5	11.6279
TRMT13	0	genome.wustl.edu	37	1	100606013	100606013	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	100606013	100606013	C	T	SNP	TRMT13	ENST00000370141	human	ensembl	74_37	+1	known	silent	c.444	p.H148	0.630	NULL	pfam_Methyltransferase_TRM13,pfam_Znf_CCCH-type_TRM13,pfam_TRM13/UPF0224_CHHC_Znf_dom	-	no_errors	TRMT13	HGNC	ENSG00000122435				134	0	0	132	7	5.03597
RTCA	0	genome.wustl.edu	37	1	100740462	100740462	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	100740462	100740462	C	T	SNP	RTCA	ENST00000260563	human	ensembl	74_37	+1	known	missense	c.595	p.R199C	0.985	pfam_RNA3'_phos_cyclase_dom,pfam_RNA3'-term_phos_cycl_insert,superfamily_RNA3'P_cycl/enolpyr_Trfase_a/b,superfamily_RNA3'-term_phos_cycl_insert,tigrfam_RNA3'_term_phos_cyc_type_1	pfam_RNA3'_phos_cyclase_dom,pfam_RNA3'-term_phos_cycl_insert,superfamily_RNA3'P_cycl/enolpyr_Trfase_a/b,superfamily_RNA3'-term_phos_cycl_insert,tigrfam_RNA3'_term_phos_cyc_type_1	-	no_errors	RTCA	HGNC	ENSG00000137996				102	0	0	64	8	11.1111
VCAM1	0	genome.wustl.edu	37	1	101194751	101194751	+	Silent	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	101194751	101194751	C	A	SNP	VCAM1	ENST00000294728	human	ensembl	74_37	+1	known	silent	c.1017	p.G339	0.971	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_C2-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom,prints_VCAM-1,prints_ICAM_VCAM_N	-	no_errors	VCAM1	HGNC	ENSG00000162692				121	0	0	67	27	28.7234
UBE4B	0	genome.wustl.edu	37	1	10155571	10155571	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	10155571	10155571	G	A	SNP	UBE4B	ENST00000343090	human	ensembl	74_37	+1	known	silent	c.264	p.S88	0.995	NULL	pfam_Ub_conjug_fac_E4_core,pfam_Ubox_domain,smart_Ubox_domain	-	no_errors	UBE4B	HGNC	ENSG00000130939				105	0	0	68	32	32
UBE4B	0	genome.wustl.edu	37	1	10197233	10197233	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	10197233	10197233	G	A	SNP	UBE4B	ENST00000343090	human	ensembl	74_37	+1	known	missense	c.2333	p.R778H	1.000	pfam_Ub_conjug_fac_E4_core	pfam_Ub_conjug_fac_E4_core,pfam_Ubox_domain,smart_Ubox_domain	-	no_errors	UBE4B	HGNC	ENSG00000130939				135	0	0	121	12	9.02256
AMY2A	0	genome.wustl.edu	37	1	104162234	104162234	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	104162234	104162234	G	A	SNP	AMY2A	ENST00000414303	human	ensembl	74_37	+1	known	missense	c.572	p.R191H	1.000	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	pfam_Glyco_hydro_13_cat_dom,pfam_A-amylase_b_C,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom,smart_A-amylase_b_C,prints_Alpha_amylase	-	no_errors	AMY2A	HGNC	ENSG00000243480				116	0	0	84	20	19.2308
CASZ1	0	genome.wustl.edu	37	1	10706370	10706370	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	10706370	10706370	C	T	SNP	CASZ1	ENST00000377022	human	ensembl	74_37	-1	known	missense	c.3511	p.A1171T	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CASZ1	HGNC	ENSG00000130940				47	0	0	20	6	23.0769
NTNG1	0	genome.wustl.edu	37	1	107867347	107867347	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	107867347	107867347	G	A	SNP	NTNG1	ENST00000370068	human	ensembl	74_37	+1	known	silent	c.690	p.A230	0.001	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_Laminin_N,pfam_EGF_laminin,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	NTNG1	HGNC	ENSG00000162631				58	0	0	58	6	9.375
FAM102B	0	genome.wustl.edu	37	1	109154858	109154858	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	109154858	109154858	G	A	SNP	FAM102B	ENST00000370035	human	ensembl	74_37	+1	known	missense	c.347	p.R116H	1.000	pfam_NT-C2	pfam_NT-C2	-	no_errors	FAM102B	HGNC	ENSG00000162636				128	0	0	87	36	29.2683
GPSM2	0	genome.wustl.edu	37	1	109461284	109461284	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	109461284	109461284	C	T	SNP	GPSM2	ENST00000264126	human	ensembl	74_37	+1	known	missense	c.1313	p.A438V	1.000	NULL	pfam_GoLoco_motif,pfam_TPR_1,pfam_TPR-4,smart_TPR_repeat,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	GPSM2	HGNC	ENSG00000121957				115	0	0	86	7	7.52688
CELSR2	0	genome.wustl.edu	37	1	109811556	109811556	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	109811556	109811556	G	A	SNP	CELSR2	ENST00000271332	human	ensembl	74_37	+1	known	missense	c.6557	p.R2186H	1.000	pfam_DUF3497	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR2	HGNC	ENSG00000143126				59	0	0	31	9	22.5
MYBPHL	0	genome.wustl.edu	37	1	109840068	109840068	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	109840068	109840068	C	T	SNP	MYBPHL	ENST00000357155	human	ensembl	74_37	-1	known	missense	c.406	p.A136T	0.905	pfam_Ig_I-set,smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYBPHL	HGNC	ENSG00000221986				57	0	0	36	9	20
AMPD2	0	genome.wustl.edu	37	1	110172028	110172028	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	110172028	110172028	C	T	SNP	AMPD2	ENST00000256578	human	ensembl	74_37	+1	known	missense	c.1940	p.A647V	0.975	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	-	no_errors	AMPD2	HGNC	ENSG00000116337				180	0	0	118	41	25.7862
ALX3	0	genome.wustl.edu	37	1	110603359	110603359	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	110603359	110603359	G	A	SNP	ALX3	ENST00000369792	human	ensembl	74_37	-1	known	missense	c.1028	p.T343M	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	ALX3	HGNC	ENSG00000156150				61	0	0	44	13	22.807
SLC6A17	0	genome.wustl.edu	37	1	110737374	110737374	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	110737374	110737374	G	A	SNP	SLC6A17	ENST00000331565	human	ensembl	74_37	+1	known	silent	c.1473	p.V491	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_orphan	-	no_errors	SLC6A17	HGNC	ENSG00000197106				59	0	0	50	4	7.40741
RBM15	0	genome.wustl.edu	37	1	110884009	110884009	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	110884009	110884009	G	A	SNP	RBM15	ENST00000369784	human	ensembl	74_37	+1	known	missense	c.1982	p.R661H	0.968	NULL	pfam_SPOC_C,pfam_RRM_dom,superfamily_SPOC_like_C_dom,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	RBM15	HGNC	ENSG00000162775				51	0	0	29	7	19.4444
KCNA3	0	genome.wustl.edu	37	1	111216253	111216253	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	111216253	111216253	C	T	SNP	KCNA3	ENST00000369769	human	ensembl	74_37	-1	known	silent	c.1179	p.A393	0.992	pfam_Ion_trans_dom,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.3,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA3	HGNC	ENSG00000177272				114	0	0	87	8	8.42105
LRIF1	0	genome.wustl.edu	37	1	111495126	111495126	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	111495126	111495126	T	A	SNP	LRIF1	ENST00000369763	human	ensembl	74_37	-1	known	missense	c.380	p.N127I	0.895	NULL	NULL	-	no_errors	LRIF1	HGNC	ENSG00000121931				113	0	0	79	25	24.0385
OVGP1	0	genome.wustl.edu	37	1	111969183	111969183	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	111969183	111969183	G	A	SNP	OVGP1	ENST00000369732	human	ensembl	74_37	-1	known	silent	c.136	p.L46	1.000	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	-	no_errors	OVGP1	HGNC	ENSG00000085465				64	0	0	30	10	25
KCND3	0	genome.wustl.edu	37	1	112524688	112524688	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	112524688	112524688	G	A	SNP	KCND3	ENST00000315987	human	ensembl	74_37	-1	known	missense	c.661	p.R221C	1.000	prints_K_chnl_volt-dep_Kv4	pfam_K_chnl_volt-dep_Kv4_C,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Shal-type,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv4,prints_K_chnl_volt-dep_Kv4.3,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCND3	HGNC	ENSG00000171385				25	0	0	11	9	45
ANGPTL7	0	genome.wustl.edu	37	1	11253813	11253813	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	11253813	11253813	G	A	SNP	ANGPTL7	ENST00000376819	human	ensembl	74_37	+1	known	silent	c.654	p.R218	0.999	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	ANGPTL7	HGNC	ENSG00000171819				33	0	0	21	9	30
MTOR	0	genome.wustl.edu	37	1	11308151	11308151	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	11308151	11308151	G	A	SNP	MTOR	ENST00000361445	human	ensembl	74_37	-1	known	missense	c.841	p.R281C	1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_DUF3385_TOR,pfam_Rapamycin-bd_dom,pfam_FATC,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,superfamily_Rapamycin-bd_dom,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	MTOR	HGNC	ENSG00000198793				98	0	0	72	16	18.1818
CAPZA1	0	genome.wustl.edu	37	1	113189836	113189836	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	113189836	113189836	G	A	SNP	CAPZA1	ENST00000263168	human	ensembl	74_37	+1	known	missense	c.44	p.R15H	1.000	pfam_CapZ_alpha	pfam_CapZ_alpha,prints_CapZ_alpha	-	no_errors	CAPZA1	HGNC	ENSG00000116489				121	0	0	86	14	14
HIPK1	0	genome.wustl.edu	37	1	114499899	114499899	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	114499899	114499899	G	A	SNP	HIPK1	ENST00000369558	human	ensembl	74_37	+1	known	silent	c.1746	p.V582	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	HIPK1	HGNC	ENSG00000163349				89	0	0	42	19	31.1475
TRIM33	0	genome.wustl.edu	37	1	114967378	114967378	+	Splice_Site	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	114967378	114967378	C	T	SNP	TRIM33	ENST00000358465	human	ensembl	74_37	-1	known	splice_site	c.1696-1	e10-1	1.000	-	-	-	no_errors	TRIM33	HGNC	ENSG00000197323				29	0	0	31	3	8.82353
PTCHD2	0	genome.wustl.edu	37	1	11562098	11562098	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	11562098	11562098	G	A	SNP	PTCHD2	ENST00000294484	human	ensembl	74_37	+1	known	missense	c.1049	p.G350D	1.000	NULL	pfam_Patched,pfam_MMPL_dom,pfscan_SSD	-	no_errors	PTCHD2	HGNC	ENSG00000204624				39	0	0	11	7	38.8889
PTCHD2	0	genome.wustl.edu	37	1	11574496	11574496	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	11574496	11574496	C	T	SNP	PTCHD2	ENST00000294484	human	ensembl	74_37	+1	known	missense	c.1366	p.R456C	1.000	pfam_Patched,pfam_MMPL_dom	pfam_Patched,pfam_MMPL_dom,pfscan_SSD	-	no_errors	PTCHD2	HGNC	ENSG00000204624				102	0	0	59	26	30.5882
NGF	0	genome.wustl.edu	37	1	115828756	115828756	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	115828756	115828756	G	A	SNP	NGF	ENST00000369512	human	ensembl	74_37	-1	known	missense	c.661	p.R221W	1.000	pirsf_Nerve_growth_factor-like,pfam_Nerve_growth_factor-rel,smart_Nerve_growth_factor-rel,prints_Nerve_growth_factor-rel,pfscan_Nerve_growth_factor-rel	pirsf_Nerve_growth_factor-like,pfam_Nerve_growth_factor-rel,smart_Nerve_growth_factor-rel,prints_Nerve_growth_factor-rel,prints_Nerve_growth_factor_bsu_mml,prints_Nerve_growth_factor_bsu,pfscan_Nerve_growth_factor-rel	-	no_errors	NGF	HGNC	ENSG00000134259				75	0	0	47	13	21.6667
IGSF3	0	genome.wustl.edu	37	1	117156493	117156493	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	117156493	117156493	G	A	SNP	IGSF3	ENST00000318837	human	ensembl	74_37	-1	known	silent	c.726	p.G242	1.000	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	IGSF3	HGNC	ENSG00000143061				28	0	0	24	9	27.2727
CD101	0	genome.wustl.edu	37	1	117556343	117556343	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	117556343	117556343	G	A	SNP	CD101	ENST00000256652	human	ensembl	74_37	+1	known	missense	c.1157	p.R386H	0.000	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	CD101	HGNC	ENSG00000134256				32	0	0	18	9	33.3333
SPAG17	0	genome.wustl.edu	37	1	118634571	118634571	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	118634571	118634571	G	A	SNP	SPAG17	ENST00000336338	human	ensembl	74_37	-1	known	missense	c.1228	p.P410S	0.000	NULL	NULL	-	no_errors	SPAG17	HGNC	ENSG00000155761				292	0	0	191	52	21.3992
NPPA	0	genome.wustl.edu	37	1	11907202	11907202	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	11907202	11907202	C	T	SNP	NPPA	ENST00000376480	human	ensembl	74_37	-1	known	missense	c.418	p.A140T	1.000	pfam_Natr_peptide,smart_Natr_peptide,prints_Natriuretic_peptide_atrial,prints_Natr_peptide	pfam_Natr_peptide,smart_Natr_peptide,prints_Natriuretic_peptide_atrial,prints_Natr_peptide	-	no_errors	NPPA	HGNC	ENSG00000175206				234	0	0	154	48	23.7624
HSD3B2	0	genome.wustl.edu	37	1	119965056	119965056	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	119965056	119965056	A	G	SNP	HSD3B2	ENST00000369416	human	ensembl	74_37	+1	known	missense	c.932	p.Q311R	0.000	NULL	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_Male_sterile_NAD-bd,pfam_Polysac_CapD-like,pfam_DH_sc/Rdtase_SDR,pfam_dTDP_dehydrorham_reduct,pfam_NmrA,pfam_PKS_KR	-	no_errors	HSD3B2	HGNC	ENSG00000203859				72	0	0	49	7	12.5
PLOD1	0	genome.wustl.edu	37	1	12024350	12024350	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	12024350	12024350	C	T	SNP	PLOD1	ENST00000376369	human	ensembl	74_37	+1	known	missense	c.1462	p.R488W	1.000	NULL	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	PLOD1	HGNC	ENSG00000083444				138	0	0	75	29	27.8846
NOTCH2	0	genome.wustl.edu	37	1	120462077	120462077	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	120462077	120462077	G	A	SNP	NOTCH2	ENST00000256646	human	ensembl	74_37	-1	known	missense	c.5639	p.A1880V	1.000	pirsf_Notch,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pirsf_Notch,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,pfam_EGF_extracell,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_2,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH2	HGNC	ENSG00000134250				32	0	0	39	5	11.3636
NOTCH2	0	genome.wustl.edu	37	1	120483245	120483245	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	120483245	120483245	G	A	SNP	NOTCH2	ENST00000256646	human	ensembl	74_37	-1	known	missense	c.3116	p.T1039M	0.025	pirsf_Notch,pfam_EG-like_dom,pfam_EGF_extracell,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pirsf_Notch,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,pfam_EGF_extracell,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_2,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH2	HGNC	ENSG00000134250				129	0	0	94	26	21.6667
VPS13D	0	genome.wustl.edu	37	1	12387789	12387789	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	12387789	12387789	G	A	SNP	VPS13D	ENST00000358136	human	ensembl	74_37	+1	known	missense	c.8075	p.S2692N	0.216	NULL	pfam_VPSAP_dom,pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	VPS13D	HGNC	ENSG00000048707				148	0	0	107	37	25.6944
DHRS3	0	genome.wustl.edu	37	1	12640620	12640620	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	12640620	12640620	G	A	SNP	DHRS3	ENST00000376223	human	ensembl	74_37	-1	known	silent	c.270	p.C90	1.000	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Polysac_CapD-like,smart_PKS/FAS_KR	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Polysac_CapD-like,smart_PKS/FAS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	DHRS3	HGNC	ENSG00000162496				53	0	0	39	10	20.4082
PRAMEF12	0	genome.wustl.edu	37	1	12836065	12836065	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	12836065	12836065	G	A	SNP	PRAMEF12	ENST00000357726	human	ensembl	74_37	+1	known	missense	c.667	p.A223T	0.836	NULL	NULL	-	no_errors	PRAMEF12	HGNC	ENSG00000116726				144	0	0	95	33	25.7812
PRAMEF11	0	genome.wustl.edu	37	1	12884930	12884930	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	12884930	12884930	A	C	SNP	PRAMEF11	ENST00000535591	human	ensembl	74_37	-1	known	missense	c.1181	p.I394S	0.000	NULL	NULL	-	no_errors	PRAMEF11	HGNC	ENSG00000204513				332	0	0	259	20	7.16846
HNRNPCL1	0	genome.wustl.edu	37	1	12907861	12907861	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	12907861	12907861	G	A	SNP	HNRNPCL1	ENST00000317869	human	ensembl	74_37	-1	known	silent	c.282	p.N94	0.009	pirsf_hnRNP_C_Raly	pfam_RRM_dom,smart_RRM_dom,pirsf_hnRNP_C_Raly,pfscan_RRM_dom	-	no_errors	HNRNPCL1	HGNC	ENSG00000179172				183	0	0	135	18	11.7647
PRAMEF13	0	genome.wustl.edu	37	1	13448474	13448474	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	13448474	13448474	C	T	SNP	PRAMEF13	ENST00000376132	human	ensembl	74_37	-1	known	missense	c.1001	p.R334H	0.000	NULL	NULL	-	no_errors	PRAMEF13	HGNC	ENSG00000204495				34	0	0	18	5	21.7391
PRAMEF14	0	genome.wustl.edu	37	1	13669154	13669154	+	Silent	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	13669154	13669154	A	G	SNP	PRAMEF14	ENST00000344998	human	ensembl	74_37	-1	known	silent	c.1032	p.G344	0.003	NULL	NULL	-	no_errors	PRAMEF14	HGNC	ENSG00000204481				131	0	0	82	11	11.828
PRAMEF20	0	genome.wustl.edu	37	1	13742962	13742962	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	13742962	13742962	G	A	SNP	PRAMEF20	ENST00000316412	human	ensembl	74_37	+1	known	missense	c.151	p.A51T	0.001	NULL	NULL	-	no_errors	PRAMEF20	HGNC	ENSG00000204478				31	0	0	32	10	23.8095
ATAD3C	0	genome.wustl.edu	37	1	1397993	1397993	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	1397993	1397993	G	A	SNP	ATAD3C	ENST00000378785	human	ensembl	74_37	+1	known	missense	c.994	p.A332T	1.000	superfamily_P-loop_NTPase	pfam_DUF3523,pfam_ATPase_AAA_core,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	ATAD3C	HGNC	ENSG00000215915				21	0	0	16	4	20
PRDM2	0	genome.wustl.edu	37	1	14105372	14105372	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	14105372	14105372	C	T	SNP	PRDM2	ENST00000235372	human	ensembl	74_37	+1	known	missense	c.1082	p.P361L	0.998	smart_Znf_C2H2-like,pirsf_RIZ_retinblastoma-bd_prot,pfscan_Znf_C2H2	pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pirsf_RIZ_retinblastoma-bd_prot,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM2	HGNC	ENSG00000116731				124	0	0	76	30	28.3019
PRDM2	0	genome.wustl.edu	37	1	14105506	14105506	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	14105506	14105506	C	T	SNP	PRDM2	ENST00000235372	human	ensembl	74_37	+1	known	missense	c.1216	p.R406W	0.945	smart_Znf_C2H2-like,pirsf_RIZ_retinblastoma-bd_prot,pfscan_Znf_C2H2	pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pirsf_RIZ_retinblastoma-bd_prot,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM2	HGNC	ENSG00000116731				68	0	0	54	16	22.8571
ENSG00000203849	0	genome.wustl.edu	37	1	142713336	142713336	+	RNA	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	142713336	142713336	C	A	SNP	ENSG00000203849	ENST00000369381	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.661	-	-	-	no_errors	RP11-417J8.6	Clone_based_vega_gene	ENSG00000203849				53	0	0	31	15	32.6087
ENSG00000234978	0	genome.wustl.edu	37	1	142804606	142804606	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	142804606	142804606	G	A	SNP	ENSG00000234978	ENST00000423385	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	RP11-423O2.5	Clone_based_vega_gene	ENSG00000234978				23	0	0	11	3	21.4286
ENSG00000242569	0	genome.wustl.edu	37	1	143364977	143364977	+	RNA	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	143364977	143364977	T	C	SNP	ENSG00000242569	ENST00000411775	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	RP11-435B5.3	Clone_based_vega_gene	ENSG00000242569				43	0	0	29	27	48.2143
PDE4DIP	0	genome.wustl.edu	37	1	144917533	144917533	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	144917533	144917533	C	T	SNP	PDE4DIP	ENST00000369356	human	ensembl	74_37	-1	known	missense	c.1571	p.R524H	0.993	NULL	pfam_Spindle_assoc,superfamily_ARM-type_fold	-	no_errors	PDE4DIP	HGNC	ENSG00000178104				502	0	0	398	57	12.5275
PDZK1	0	genome.wustl.edu	37	1	145748554	145748554	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	145748554	145748554	G	T	SNP	PDZK1	ENST00000344770	human	ensembl	74_37	+1	known	missense	c.427	p.G143C	0.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZK1	HGNC	ENSG00000174827				111	0	0	97	7	6.73077
CHD1L	0	genome.wustl.edu	37	1	146756152	146756152	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	146756152	146756152	T	C	SNP	CHD1L	ENST00000369258	human	ensembl	74_37	+1	known	missense	c.1834	p.S612P	0.986	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Macro_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	CHD1L	HGNC	ENSG00000131778				167	0	0	115	39	25.3247
LINC00869	0	genome.wustl.edu	37	1	149284701	149284701	+	RNA	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	149284701	149284701	T	C	SNP	LINC00869	ENST00000424684	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	RP11-403I13.7	Clone_based_vega_gene	ENSG00000226067				9	0	0	5	2	28.5714
HIST2H3PS2	0	genome.wustl.edu	37	1	149400148	149400148	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	149400148	149400148	C	T	SNP	HIST2H3PS2	ENST00000392948	human	ensembl	74_37	-1	putative	missense	c.395	p.R132H	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST2H3PS2	HGNC	ENSG00000203818				89	0	0	42	10	19.2308
SF3B4	0	genome.wustl.edu	37	1	149898418	149898418	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	149898418	149898418	G	A	SNP	SF3B4	ENST00000271628	human	ensembl	74_37	-1	known	missense	c.556	p.R186C	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SF3B4	HGNC	ENSG00000143368				84	0	0	54	24	30.7692
OTUD7B	0	genome.wustl.edu	37	1	149936124	149936124	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	149936124	149936124	C	T	SNP	OTUD7B	ENST00000479905	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	OTUD7B	HGNC	ENSG00000163113				63	0	0	54	16	22.8571
PRPF3	0	genome.wustl.edu	37	1	150305209	150305209	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	150305209	150305209	C	A	SNP	PRPF3	ENST00000324862	human	ensembl	74_37	+1	known	missense	c.478	p.L160M	1.000	NULL	pfam_Pre-mRNA_splic_Prp3,pfam_DUF1115,pfam_PWI_dom,superfamily_PWI_dom,smart_PWI_dom	-	no_errors	PRPF3	HGNC	ENSG00000117360				84	0	0	55	28	33.7349
TARS2	0	genome.wustl.edu	37	1	150476833	150476833	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	150476833	150476833	C	T	SNP	TARS2	ENST00000369064	human	ensembl	74_37	+1	known	missense	c.1640	p.A547V	1.000	pfscan_aa-tRNA-synth_II,prints_Thr-tRNA-ligase_IIa,tigrfam_Thr-tRNA-ligase_IIa	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_TGS,pfam_tRNA_SAD,superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_Anticodon-bd,superfamily_TGS-like,smart_tRNA_SAD,pfscan_aa-tRNA-synth_II,prints_Thr-tRNA-ligase_IIa,tigrfam_Thr-tRNA-ligase_IIa	-	no_errors	TARS2	HGNC	ENSG00000143374				36	0	0	19	5	20.8333
HORMAD1	0	genome.wustl.edu	37	1	150680815	150680815	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	150680815	150680815	C	T	SNP	HORMAD1	ENST00000361824	human	ensembl	74_37	-1	known	missense	c.464	p.R155H	1.000	pfam_HORMA_DNA-bd,superfamily_HORMA_DNA-bd,pfscan_HORMA_DNA-bd	pfam_HORMA_DNA-bd,superfamily_HORMA_DNA-bd,pfscan_HORMA_DNA-bd	-	no_errors	HORMAD1	HGNC	ENSG00000143452				80	0	0	60	13	17.8082
HORMAD1	0	genome.wustl.edu	37	1	150680846	150680846	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	150680846	150680846	C	T	SNP	HORMAD1	ENST00000361824	human	ensembl	74_37	-1	known	missense	c.433	p.D145N	0.976	pfam_HORMA_DNA-bd,superfamily_HORMA_DNA-bd,pfscan_HORMA_DNA-bd	pfam_HORMA_DNA-bd,superfamily_HORMA_DNA-bd,pfscan_HORMA_DNA-bd	-	no_errors	HORMAD1	HGNC	ENSG00000143452				78	0	0	59	17	22.3684
GABPB2	0	genome.wustl.edu	37	1	151076045	151076045	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	151076045	151076045	C	T	SNP	GABPB2	ENST00000368918	human	ensembl	74_37	+1	known	silent	c.630	p.P210	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	GABPB2	HGNC	ENSG00000143458				97	0	0	55	10	15.3846
PI4KB	0	genome.wustl.edu	37	1	151276023	151276023	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	151276023	151276023	T	C	SNP	PI4KB	ENST00000271657	human	ensembl	74_37	-1	known	missense	c.1550	p.D517G	1.000	superfamily_Kinase-like_dom	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PI4KB	HGNC	ENSG00000143393				264	2	0.75188	196	60	23.4375
CGN	0	genome.wustl.edu	37	1	151496719	151496719	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	151496719	151496719	G	A	SNP	CGN	ENST00000271636	human	ensembl	74_37	+1	known	missense	c.1286	p.R429H	0.991	NULL	pfam_Myosin_tail	-	no_errors	CGN	HGNC	ENSG00000143375				33	0	0	17	16	48.4848
CELF3	0	genome.wustl.edu	37	1	151680282	151680282	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	151680282	151680282	C	T	SNP	CELF3	ENST00000290583	human	ensembl	74_37	-1	known	missense	c.616	p.A206T	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CELF3	HGNC	ENSG00000159409				27	0	0	13	4	23.5294
TDRKH	0	genome.wustl.edu	37	1	151747603	151747603	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	151747603	151747603	C	T	SNP	TDRKH	ENST00000368822	human	ensembl	74_37	-1	known	missense	c.1474	p.A492T	0.999	NULL	pfam_KH_dom_type_1,pfam_Tudor,smart_KH_dom,smart_Tudor,pfscan_Tudor,pfscan_KH_dom_type_1	-	no_errors	TDRKH	HGNC	ENSG00000182134				86	0	0	65	15	18.75
TCHH	0	genome.wustl.edu	37	1	152082230	152082230	+	Silent	SNP	T	T	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	152082230	152082230	T	G	SNP	TCHH	ENST00000368804	human	ensembl	74_37	-1	known	silent	c.3463	p.R1155	0.469	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	TCHH	HGNC	ENSG00000159450				62	0	0	52	18	25.7143
TCHH	0	genome.wustl.edu	37	1	152085491	152085491	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	152085491	152085491	G	A	SNP	TCHH	ENST00000368804	human	ensembl	74_37	-1	known	missense	c.202	p.R68C	0.001	pfscan_EF_hand_dom	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	TCHH	HGNC	ENSG00000159450				50	0	0	35	15	30
FLG2	0	genome.wustl.edu	37	1	152325581	152325581	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	152325581	152325581	T	C	SNP	FLG2	ENST00000388718	human	ensembl	74_37	-1	known	missense	c.4681	p.T1561A	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG2	HGNC	ENSG00000143520				257	0	0	217	22	9.20502
KPRP	0	genome.wustl.edu	37	1	152733226	152733226	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	152733226	152733226	C	A	SNP	KPRP	ENST00000368773	human	ensembl	74_37	+1	known	missense	c.1162	p.L388I	0.002	NULL	NULL	-	no_errors	KPRP	HGNC	ENSG00000203786				60	0	0	50	4	7.40741
LCE1F	0	genome.wustl.edu	37	1	152748933	152748933	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	152748933	152748933	G	A	SNP	LCE1F	ENST00000334371	human	ensembl	74_37	+1	known	missense	c.86	p.C29Y	0.950	NULL	NULL	-	no_errors	LCE1F	HGNC	ENSG00000240386				63	0	0	61	7	10.2941
SPRR4	0	genome.wustl.edu	37	1	152944506	152944506	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	152944506	152944506	C	A	SNP	SPRR4	ENST00000328051	human	ensembl	74_37	+1	known	missense	c.140	p.A47D	0.997	pfam_Cornifin	pfam_Cornifin	-	no_errors	SPRR4	HGNC	ENSG00000184148				158	0	0	146	14	8.75
NUP210L	0	genome.wustl.edu	37	1	154125256	154125256	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	154125256	154125256	G	A	SNP	NUP210L	ENST00000368559	human	ensembl	74_37	-1	known	missense	c.296	p.T99M	1.000	NULL	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,smart_Big_2	-	no_errors	NUP210L	HGNC	ENSG00000143552				83	0	0	68	7	9.33333
TPM3	0	genome.wustl.edu	37	1	154145414	154145414	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	154145414	154145414	C	T	SNP	TPM3	ENST00000368530	human	ensembl	74_37	-1	known	missense	c.536	p.R179H	1.000	pfam_Tropomyosin,prints_Tropomyosin	pfam_Tropomyosin,prints_Tropomyosin	-	no_errors	TPM3	HGNC	ENSG00000143549				150	0	0	129	28	17.8344
TDRD10	0	genome.wustl.edu	37	1	154493838	154493838	+	Silent	SNP	A	A	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	154493838	154493838	A	C	SNP	TDRD10	ENST00000368480	human	ensembl	74_37	+1	known	silent	c.252	p.T84	0.003	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_Tudor,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TDRD10	HGNC	ENSG00000163239				208	0	0	132	45	25.4237
TDRD10	0	genome.wustl.edu	37	1	154514474	154514474	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	154514474	154514474	G	A	SNP	TDRD10	ENST00000462871	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TDRD10	HGNC	ENSG00000163239				37	0	0	18	5	21.7391
UBE2Q1	0	genome.wustl.edu	37	1	154523896	154523896	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	154523896	154523896	G	A	SNP	UBE2Q1	ENST00000292211	human	ensembl	74_37	-1	known	nonsense	c.1147	p.R383*	1.000	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2Q1	HGNC	ENSG00000160714				114	0	0	81	33	28.9474
ADAR	0	genome.wustl.edu	37	1	154574691	154574691	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	154574691	154574691	T	A	SNP	ADAR	ENST00000292205	human	ensembl	74_37	-1	known	missense	c.556	p.I186F	0.000	pfam_dsRNA_A_deaminase,smart_dsRNA_A_deaminase,pfscan_dsRNA_A_deaminase	pfam_A_deamin,pfam_dsRNA_A_deaminase,pfam_dsRNA-bd_dom,smart_dsRNA_A_deaminase,smart_dsRNA-bd_dom,smart_A_deamin,pfscan_dsRNA-bd_dom,pfscan_dsRNA_A_deaminase,pfscan_A_deamin	-	no_errors	ADAR	HGNC	ENSG00000160710				97	0	0	67	20	22.9885
KCNN3	0	genome.wustl.edu	37	1	154698441	154698441	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	154698441	154698441	G	A	SNP	KCNN3	ENST00000271915	human	ensembl	74_37	-1	novel	missense	c.1652	p.A551V	1.000	superfamily_CaM-bd_dom	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_2pore_dom_K_chnl_dom,superfamily_CaM-bd_dom,prints_K_chnl_Ca-activ_SK	-	no_errors	KCNN3	HGNC	ENSG00000143603				29	0	0	20	7	25.9259
PBXIP1	0	genome.wustl.edu	37	1	154919108	154919108	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	154919108	154919108	C	T	SNP	PBXIP1	ENST00000542459	human	ensembl	74_37	-1	known	missense	c.577	p.G193S	0.635	NULL	NULL	-	no_errors	PBXIP1	HGNC	ENSG00000163346				27	0	0	25	9	26.4706
SHC1	0	genome.wustl.edu	37	1	154938054	154938054	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	154938054	154938054	G	A	SNP	SHC1	ENST00000368445	human	ensembl	74_37	-1	known	missense	c.1588	p.P530S	1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_PTB/PI_dom,pfam_SH2,smart_PTB/PI_dom,smart_SH2,pfscan_PTB/PI_dom,pfscan_SH2,prints_PID_Shc-like,prints_SH2	-	no_errors	SHC1	HGNC	ENSG00000160691				91	0	0	75	8	9.63855
DCST2	0	genome.wustl.edu	37	1	154999075	154999075	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	154999075	154999075	G	A	SNP	DCST2	ENST00000368424	human	ensembl	74_37	-1	known	missense	c.1459	p.R487C	0.823	pfam_DC_STAMP-like	pfam_DC_STAMP-like	-	no_errors	DCST2	HGNC	ENSG00000163354				132	0	0	123	9	6.81818
DCST1	0	genome.wustl.edu	37	1	155014205	155014205	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	155014205	155014205	C	T	SNP	DCST1	ENST00000295542	human	ensembl	74_37	+1	known	missense	c.764	p.A255V	0.227	NULL	pfam_DC_STAMP-like,pfscan_Znf_RING	-	no_errors	DCST1	HGNC	ENSG00000163357				140	0	0	83	30	26.5487
TRIM46	0	genome.wustl.edu	37	1	155147746	155147746	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	155147746	155147746	C	T	SNP	TRIM46	ENST00000468878	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TRIM46	HGNC	ENSG00000163462				69	0	0	38	3	7.31707
CLK2	0	genome.wustl.edu	37	1	155236574	155236574	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	155236574	155236574	A	G	SNP	CLK2	ENST00000368361	human	ensembl	74_37	-1	known	missense	c.784	p.Y262H	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CLK2	HGNC	ENSG00000176444				53	0	0	33	3	8.33333
ASH1L	0	genome.wustl.edu	37	1	155317653	155317653	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	155317653	155317653	G	A	SNP	ASH1L	ENST00000368346	human	ensembl	74_37	-1	known	missense	c.7612	p.R2538C	1.000	superfamily_Bromodomain,smart_Bromodomain	pfam_SET_dom,pfam_BAH_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_AT_hook_DNA-bd_motif,smart_AWS,smart_SET_dom,smart_Bromodomain,smart_Znf_PHD,smart_BAH_dom,pfscan_AWS,pfscan_BAH_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Bromodomain	-	no_errors	ASH1L	HGNC	ENSG00000116539				112	0	0	107	6	5.30973
LMNA	0	genome.wustl.edu	37	1	156105054	156105054	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	156105054	156105054	G	A	SNP	LMNA	ENST00000368300	human	ensembl	74_37	+1	known	missense	c.887	p.R296H	1.000	pfam_IF	pfam_IF,pfam_Lamin_tail_dom,superfamily_Prefoldin	-	no_errors	LMNA	HGNC	ENSG00000160789				24	0	0	17	8	32
LMNA	0	genome.wustl.edu	37	1	156106043	156106043	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	156106043	156106043	G	A	SNP	LMNA	ENST00000368300	human	ensembl	74_37	+1	known	missense	c.1196	p.R399H	0.275	NULL	pfam_IF,pfam_Lamin_tail_dom,superfamily_Prefoldin	-	no_errors	LMNA	HGNC	ENSG00000160789				37	0	0	15	11	42.3077
TMEM79	0	genome.wustl.edu	37	1	156255748	156255748	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	156255748	156255748	T	C	SNP	TMEM79	ENST00000295694	human	ensembl	74_37	+1	known	missense	c.731	p.V244A	1.000	NULL	NULL	-	no_errors	TMEM79	HGNC	ENSG00000163472				175	0	0	116	7	5.69106
TMEM79	0	genome.wustl.edu	37	1	156256097	156256097	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	156256097	156256097	G	A	SNP	TMEM79	ENST00000357501	human	ensembl	74_37	+1	known	missense	c.88	p.A30T	0.977	NULL	NULL	-	no_errors	TMEM79	HGNC	ENSG00000163472				83	0	0	68	4	5.55556
INSRR	0	genome.wustl.edu	37	1	156812271	156812271	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	156812271	156812271	G	A	SNP	INSRR	ENST00000368195	human	ensembl	74_37	-1	known	silent	c.3156	p.G1052	0.936	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom	-	no_errors	INSRR	HGNC	ENSG00000027644				85	0	0	86	7	7.52688
CD1D	0	genome.wustl.edu	37	1	158151348	158151348	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	158151348	158151348	G	A	SNP	CD1D	ENST00000368171	human	ensembl	74_37	+1	known	silent	c.165	p.T55	0.338	superfamily_MHC_I/II-like_Ag-recog	pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	CD1D	HGNC	ENSG00000158473				98	0	0	78	6	7.14286
CD1B	0	genome.wustl.edu	37	1	158298045	158298045	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	158298045	158298045	G	A	SNP	CD1B	ENST00000368168	human	ensembl	74_37	-1	known	missense	c.983	p.S328L	0.062	NULL	pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	CD1B	HGNC	ENSG00000158485				55	0	0	31	20	39.2157
CD1B	0	genome.wustl.edu	37	1	158298046	158298046	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	158298046	158298046	A	T	SNP	CD1B	ENST00000368168	human	ensembl	74_37	-1	known	missense	c.982	p.S328T	0.064	NULL	pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	CD1B	HGNC	ENSG00000158485				53	0	0	31	21	40.3846
OR6K2	0	genome.wustl.edu	37	1	158669993	158669993	+	Silent	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	158669993	158669993	A	G	SNP	OR6K2	ENST00000359610	human	ensembl	74_37	-1	known	silent	c.450	p.C150	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6K2	HGNC	ENSG00000196171				112	0	0	86	5	5.49451
OR6K6	0	genome.wustl.edu	37	1	158724726	158724726	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	158724726	158724726	C	A	SNP	OR6K6	ENST00000368144	human	ensembl	74_37	+1	known	missense	c.121	p.L41I	0.684	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6K6	HGNC	ENSG00000180433				154	0	0	127	12	8.63309
OR6K6	0	genome.wustl.edu	37	1	158725144	158725144	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	158725144	158725144	G	A	SNP	OR6K6	ENST00000368144	human	ensembl	74_37	+1	known	missense	c.539	p.G180D	0.977	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6K6	HGNC	ENSG00000180433				81	0	0	95	6	5.94059
OR6K6	0	genome.wustl.edu	37	1	158725344	158725344	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	158725344	158725344	C	T	SNP	OR6K6	ENST00000368144	human	ensembl	74_37	+1	known	missense	c.739	p.R247W	0.062	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6K6	HGNC	ENSG00000180433				84	0	0	67	15	18.2927
OR6N1	0	genome.wustl.edu	37	1	158735692	158735692	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	158735692	158735692	G	A	SNP	OR6N1	ENST00000335094	human	ensembl	74_37	-1	known	nonsense	c.781	p.Q261*	0.078	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6N1	HGNC	ENSG00000197403				256	0	0	174	20	10.3093
MNDA	0	genome.wustl.edu	37	1	158813117	158813117	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	158813117	158813117	A	G	SNP	MNDA	ENST00000368141	human	ensembl	74_37	+1	known	missense	c.314	p.N105S	0.000	NULL	pfam_HIN200/IF120x,pfam_DAPIN,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	MNDA	HGNC	ENSG00000163563				53	0	0	29	8	21.6216
OR10J1	0	genome.wustl.edu	37	1	159409955	159409955	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	159409955	159409955	C	T	SNP	OR10J1	ENST00000423932	human	ensembl	74_37	+1	known	missense	c.407	p.A136V	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10J1	HGNC	ENSG00000196184				127	0	0	96	7	6.79612
CCDC19	0	genome.wustl.edu	37	1	159850438	159850438	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	159850438	159850438	C	T	SNP	CCDC19	ENST00000368099	human	ensembl	74_37	-1	known	missense	c.950	p.R317H	0.998	NULL	NULL	-	no_errors	CCDC19	HGNC	ENSG00000213085				70	0	0	82	23	21.9048
IGSF9	0	genome.wustl.edu	37	1	159907504	159907504	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	159907504	159907504	G	A	SNP	IGSF9	ENST00000368094	human	ensembl	74_37	-1	known	silent	c.372	p.N124	0.998	smart_Ig_sub	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	IGSF9	HGNC	ENSG00000085552				99	0	0	63	14	18.1818
KCNJ10	0	genome.wustl.edu	37	1	160011659	160011659	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	160011659	160011659	G	T	SNP	KCNJ10	ENST00000368089	human	ensembl	74_37	-1	known	missense	c.664	p.Q222K	0.841	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir1.2,prints_K_chnl_inward-rec_Kir1.1	-	no_errors	KCNJ10	HGNC	ENSG00000177807				69	0	0	37	23	38.3333
KCNJ10	0	genome.wustl.edu	37	1	160011933	160011933	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	160011933	160011933	G	A	SNP	KCNJ10	ENST00000368089	human	ensembl	74_37	-1	known	silent	c.390	p.G130	1.000	pfam_K_chnl_inward-rec_Kir,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir1.2,prints_K_chnl_inward-rec_Kir1.1	-	no_errors	KCNJ10	HGNC	ENSG00000177807				73	0	0	53	20	27.3973
KCNJ9	0	genome.wustl.edu	37	1	160053993	160053993	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	160053993	160053993	G	A	SNP	KCNJ9	ENST00000368088	human	ensembl	74_37	+1	known	missense	c.173	p.R58H	1.000	pfam_K_chnl_inward-rec_Kir,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir3.3	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir3.3	-	no_errors	KCNJ9	HGNC	ENSG00000162728				26	0	0	12	4	25
IGSF8	0	genome.wustl.edu	37	1	160062178	160062178	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	160062178	160062178	G	A	SNP	IGSF8	ENST00000314485	human	ensembl	74_37	-1	known	silent	c.1620	p.G540	0.802	smart_Ig_sub	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	IGSF8	HGNC	ENSG00000162729				40	0	0	27	6	18.1818
ATP1A4	0	genome.wustl.edu	37	1	160151577	160151577	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	160151577	160151577	G	A	SNP	ATP1A4	ENST00000368081	human	ensembl	74_37	+1	known	missense	c.2840	p.R947H	0.986	pfam_ATPase_P-typ_cation-transptr_C,tigrfam_ATPase_P-typ_Na/K_IIC	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP1A4	HGNC	ENSG00000132681				105	0	0	74	23	23.7113
COPA	0	genome.wustl.edu	37	1	160261166	160261166	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	160261166	160261166	G	A	SNP	COPA	ENST00000368069	human	ensembl	74_37	-1	known	missense	c.3406	p.R1136C	1.000	pfam_Coatomer_asu_C,pirsf_Coatomer_asu	pfam_Coatomer_asu_C,pfam_Coatomer_WD-assoc_reg,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Coatomer_asu,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	COPA	HGNC	ENSG00000122218				81	0	0	61	21	25.6098
ARHGAP30	0	genome.wustl.edu	37	1	161022260	161022260	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	161022260	161022260	G	A	SNP	ARHGAP30	ENST00000368013	human	ensembl	74_37	-1	known	missense	c.910	p.R304C	0.968	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP30	HGNC	ENSG00000186517				298	0	0	167	72	30.1255
ARHGAP30	0	genome.wustl.edu	37	1	161039355	161039355	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	161039355	161039355	G	A	SNP	ARHGAP30	ENST00000368013	human	ensembl	74_37	-1	known	silent	c.60	p.C20	0.998	superfamily_Rho_GTPase_activation_prot,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP30	HGNC	ENSG00000186517				79	0	0	43	13	23.2143
USP21	0	genome.wustl.edu	37	1	161130563	161130563	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	161130563	161130563	C	T	SNP	USP21	ENST00000289865	human	ensembl	74_37	+1	known	missense	c.133	p.P45S	1.000	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP21	HGNC	ENSG00000143258				47	0	0	42	15	26.3158
NDUFS2	0	genome.wustl.edu	37	1	161180180	161180180	+	Splice_Site	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	161180180	161180180	G	T	SNP	NDUFS2	ENST00000367993	human	ensembl	74_37	+1	known	splice_site	c.866+1	e8+1	1.000	-	-	-	no_errors	NDUFS2	HGNC	ENSG00000158864				129	0	0	101	9	8.18182
MPZ	0	genome.wustl.edu	37	1	161277190	161277190	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	161277190	161277190	A	G	SNP	MPZ	ENST00000360451	human	ensembl	74_37	-1	known	missense	c.122	p.V41A	1.000	pfam_Ig_V-set,pfscan_Ig-like_dom	pfam_Myelin-PO_C,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom,prints_Myelin_P0	-	no_errors	MPZ	HGNC	ENSG00000158887				36	0	0	21	9	30
HSPA6	0	genome.wustl.edu	37	1	161495324	161495324	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	161495324	161495324	C	T	SNP	HSPA6	ENST00000309758	human	ensembl	74_37	+1	known	silent	c.876	p.G292	0.987	pfam_Hsp_70_fam,pfam_MreB_Mrl	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA6	HGNC	ENSG00000173110				38	0	0	19	8	29.6296
FCGR3A	0	genome.wustl.edu	37	1	161514508	161514508	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	161514508	161514508	T	C	SNP	FCGR3A	ENST00000367969	human	ensembl	74_37	-1	known	missense	c.668	p.N223S	0.000	smart_Ig_sub,pfscan_Ig-like_dom	smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	FCGR3A	HGNC	ENSG00000203747				31	0	0	27	3	10
FCGR3B	0	genome.wustl.edu	37	1	161599810	161599810	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	161599810	161599810	G	A	SNP	FCGR3B	ENST00000294800	human	ensembl	74_37	-1	known	missense	c.77	p.A26V	0.973	pfscan_Ig-like_dom	smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	FCGR3B	HGNC	ENSG00000162747				56	0	0	37	16	30.1887
OLFML2B	0	genome.wustl.edu	37	1	161967927	161967927	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	161967927	161967927	G	A	SNP	OLFML2B	ENST00000294794	human	ensembl	74_37	-1	known	missense	c.1162	p.H388Y	0.002	NULL	pfam_Olfac-like,superfamily_NA-bd_OB-fold,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFML2B	HGNC	ENSG00000162745				119	0	0	73	29	28.4314
UHMK1	0	genome.wustl.edu	37	1	162473601	162473601	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	162473601	162473601	G	A	SNP	UHMK1	ENST00000489294	human	ensembl	74_37	+1	known	missense	c.811	p.A271T	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RRM_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_RRM_dom,pfscan_RRM_dom,pfscan_Prot_kinase_dom	-	no_errors	UHMK1	HGNC	ENSG00000152332				38	0	0	33	15	31.25
SPEN	0	genome.wustl.edu	37	1	16257770	16257770	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	16257770	16257770	G	A	SNP	SPEN	ENST00000375759	human	ensembl	74_37	+1	known	missense	c.5035	p.V1679I	0.000	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC_like_C_dom,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526				202	0	0	127	51	28.6517
ZBTB17	0	genome.wustl.edu	37	1	16272720	16272720	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	16272720	16272720	C	T	SNP	ZBTB17	ENST00000375733	human	ensembl	74_37	-1	known	missense	c.464	p.R155H	0.009	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB17	HGNC	ENSG00000116809				117	0	0	62	23	27.0588
HSD17B7	0	genome.wustl.edu	37	1	162773301	162773301	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	162773301	162773301	G	A	SNP	HSD17B7	ENST00000254521	human	ensembl	74_37	+1	known	silent	c.723	p.T241	0.021	NULL	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH	-	no_errors	HSD17B7	HGNC	ENSG00000132196				68	0	0	52	12	18.75
PBX1	0	genome.wustl.edu	37	1	164769123	164769123	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	164769123	164769123	C	T	SNP	PBX1	ENST00000420696	human	ensembl	74_37	+1	known	missense	c.698	p.A233V	1.000	superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_PBX,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	PBX1	HGNC	ENSG00000185630				33	0	0	18	4	18.1818
LMX1A	0	genome.wustl.edu	37	1	165322399	165322399	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	165322399	165322399	G	A	SNP	LMX1A	ENST00000294816	human	ensembl	74_37	-1	known	silent	c.177	p.C59	0.996	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LMX1A	HGNC	ENSG00000162761				33	0	0	26	11	29.7297
DUSP27	0	genome.wustl.edu	37	1	167096298	167096298	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	167096298	167096298	G	A	SNP	DUSP27	ENST00000271385	human	ensembl	74_37	+1	known	missense	c.1930	p.A644T	0.992	NULL	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP,prints_Atypical_DUSP_famA	-	no_errors	DUSP27	HGNC	ENSG00000198842				23	0	0	13	3	18.75
CD247	0	genome.wustl.edu	37	1	167400950	167400950	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	167400950	167400950	C	T	SNP	CD247	ENST00000362089	human	ensembl	74_37	-1	known	missense	c.463	p.A155T	0.994	pfam_Phos_immunorcpt_sig_ITAM,smart_Phos_immunorcpt_sig_ITAM,pfscan_Phos_immunorcpt_sig_ITAM	pfam_Phos_immunorcpt_sig_ITAM,pfam_CR3_zeta/IgE_Fc_rcpt_gamma,smart_Phos_immunorcpt_sig_ITAM,pfscan_Phos_immunorcpt_sig_ITAM	-	no_errors	CD247	HGNC	ENSG00000198821				78	0	0	54	21	28
GPR161	0	genome.wustl.edu	37	1	168065850	168065850	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	168065850	168065850	C	T	SNP	GPR161	ENST00000537209	human	ensembl	74_37	-1	known	missense	c.1055	p.R352H	1.000	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR161	HGNC	ENSG00000143147				75	0	0	52	7	11.8644
NADK	0	genome.wustl.edu	37	1	1693452	1693452	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	1693452	1693452	G	A	SNP	NADK	ENST00000344463	human	ensembl	74_37	-1	known	missense	c.202	p.P68S	1.000	NULL	pfam_PolyP/ATP_NADK_prd,superfamily_ATP-NAD_kinase_PpnK-typ	-	no_errors	NADK	HGNC	ENSG00000008130				50	0	0	28	4	12.5
CROCCP2	0	genome.wustl.edu	37	1	16952904	16952904	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	16952904	16952904	C	T	SNP	CROCCP2	ENST00000412962	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.996	-	-	-	no_errors	CROCCP2	HGNC	ENSG00000215908				133	0	0	93	6	6.06061
SELL	0	genome.wustl.edu	37	1	169672454	169672454	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	169672454	169672454	C	A	SNP	SELL	ENST00000236147	human	ensembl	74_37	-1	known	missense	c.933	p.K311N	0.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pirsf_L-selectin,pfscan_Sushi_SCR_CCP	pfam_C-type_lectin,pfam_Sushi_SCR_CCP,pfam_EG-like_dom,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_C-type_lectin,smart_EG-like_dom,smart_Sushi_SCR_CCP,pirsf_L-selectin,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Sushi_SCR_CCP,prints_Selectin_superfamily	-	no_errors	SELL	HGNC	ENSG00000188404				57	0	0	56	4	6.66667
SELE	0	genome.wustl.edu	37	1	169697058	169697058	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	169697058	169697058	G	A	SNP	SELE	ENST00000333360	human	ensembl	74_37	-1	known	silent	c.1290	p.C430	0.753	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_C-type_lectin,pfam_EG-like_dom,pfam_EGF_extracell,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_C-type_lectin,smart_EG-like_dom,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Sushi_SCR_CCP,prints_Selectin_superfamily	-	no_errors	SELE	HGNC	ENSG00000007908				68	0	0	72	7	8.86076
MST1L	0	genome.wustl.edu	37	1	17084078	17084078	+	RNA	SNP	G	G	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	17084078	17084078	G	C	SNP	MST1L	ENST00000455405	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MST1L	HGNC	ENSG00000186715				261	0	0	195	17	8.01887
MROH9	0	genome.wustl.edu	37	1	170964609	170964609	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	170964609	170964609	C	T	SNP	MROH9	ENST00000367759	human	ensembl	74_37	+1	known	missense	c.1274	p.T425M	0.845	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	MROH9	HGNC	ENSG00000117501				78	0	0	48	17	26.1538
FMO2	0	genome.wustl.edu	37	1	171178010	171178010	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	171178010	171178010	C	T	SNP	FMO2	ENST00000209929	human	ensembl	74_37	+1	known	missense	c.1334	p.A445V	0.244	pfam_Flavin_mOase-like,prints_Flavin_mOase_2	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,prints_Flavin_mOase,prints_Flavin_mOase_2,prints_Flavin_mOase_1,prints_Flavin_mOase_5	-	no_errors	FMO2	HGNC	ENSG00000094963				242	0	0	222	25	10.1215
FMO1	0	genome.wustl.edu	37	1	171252297	171252297	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	171252297	171252297	C	T	SNP	FMO1	ENST00000354841	human	ensembl	74_37	+1	known	missense	c.1198	p.P400S	0.998	pfam_Flavin_mOase-like,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase_1	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase,prints_Flavin_mOase_1,prints_Flavin_mOase_2	-	no_errors	FMO1	HGNC	ENSG00000010932				170	0	0	165	12	6.77966
PRRC2C	0	genome.wustl.edu	37	1	171509407	171509407	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	171509407	171509407	G	A	SNP	PRRC2C	ENST00000392078	human	ensembl	74_37	+1	known	silent	c.2802	p.T934	0.989	NULL	pfam_BAT2_N	-	no_errors	PRRC2C	HGNC	ENSG00000117523				92	0	0	73	5	6.41026
ENSG00000230239	0	genome.wustl.edu	37	1	17183245	17183245	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	17183245	17183245	G	A	SNP	ENSG00000230239	ENST00000414128	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.928	-	-	-	no_errors	RP11-108M9.2	Clone_based_vega_gene	ENSG00000230239				43	0	0	21	5	19.2308
LOC101927806	0	genome.wustl.edu	37	1	17197929	17197929	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	17197929	17197929	G	A	SNP	LOC101927806	ENST00000438002	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.838	-	-	-	no_errors	U1	RFAM	ENSG00000228549				20	0	0	12	4	25
TNFSF18	0	genome.wustl.edu	37	1	173019955	173019955	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	173019955	173019955	G	A	SNP	TNFSF18	ENST00000404377	human	ensembl	74_37	-1	known	missense	c.148	p.L50F	0.009	NULL	pfam_TNF_dom,superfamily_Tumour_necrosis_fac-like_dom	-	no_errors	TNFSF18	HGNC	ENSG00000120337				53	0	0	42	16	27.5862
ATP13A2	0	genome.wustl.edu	37	1	17314944	17314944	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	17314944	17314944	C	T	SNP	ATP13A2	ENST00000326735	human	ensembl	74_37	-1	known	missense	c.2635	p.G879S	1.000	superfamily_HAD-like_dom,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_Cation_typ_V,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP13A2	HGNC	ENSG00000159363				100	0	0	56	18	24.3243
PADI2	0	genome.wustl.edu	37	1	17413176	17413176	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	17413176	17413176	C	T	SNP	PADI2	ENST00000375486	human	ensembl	74_37	-1	known	missense	c.674	p.R225H	1.000	pfam_Prot_Arg_deaminase_cen_dom,superfamily_Prot_Arg_deaminase_cen_dom,pirsf_Protein-arginine_deiminase_sub	pfam_PAD_C,pfam_Prot_Arg_deaminase_cen_dom,pfam_PAD_N,superfamily_Prot_Arg_deaminase_cen_dom,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	-	no_errors	PADI2	HGNC	ENSG00000117115				80	0	0	63	7	10
GPR52	0	genome.wustl.edu	37	1	174417499	174417499	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	174417499	174417499	G	A	SNP	GPR52	ENST00000367685	human	ensembl	74_37	+1	known	missense	c.250	p.A84T	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR52	HGNC	ENSG00000203737				221	0	0	157	44	21.8905
MRPS14	0	genome.wustl.edu	37	1	174987651	174987651	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	174987651	174987651	C	T	SNP	MRPS14	ENST00000476371	human	ensembl	74_37	-1	known	missense	c.107	p.R36H	1.000	NULL	pfam_Ribosomal_S14	-	no_errors	MRPS14	HGNC	ENSG00000120333				130	0	0	81	15	15.625
TNN	0	genome.wustl.edu	37	1	175046767	175046767	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	175046767	175046767	G	A	SNP	TNN	ENST00000239462	human	ensembl	74_37	+1	known	silent	c.213	p.S71	0.000	NULL	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_Fibronectin_type3	-	no_errors	TNN	HGNC	ENSG00000120332				44	0	0	19	4	17.3913
PADI3	0	genome.wustl.edu	37	1	17596768	17596768	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	17596768	17596768	C	T	SNP	PADI3	ENST00000375460	human	ensembl	74_37	+1	known	silent	c.693	p.G231	0.395	pfam_Prot_Arg_deaminase_cen_dom,superfamily_Prot_Arg_deaminase_cen_dom,pirsf_Protein-arginine_deiminase_sub	pfam_PAD_C,pfam_Prot_Arg_deaminase_cen_dom,pfam_PAD_N,superfamily_Prot_Arg_deaminase_cen_dom,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	-	no_errors	PADI3	HGNC	ENSG00000142619				148	0	0	122	7	5.42636
PAPPA2	0	genome.wustl.edu	37	1	176564697	176564697	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	176564697	176564697	C	T	SNP	PAPPA2	ENST00000367662	human	ensembl	74_37	+1	known	missense	c.1957	p.R653C	0.022	NULL	pfam_Notch_dom,pfam_Sushi_SCR_CCP,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA2	HGNC	ENSG00000116183				46	0	0	32	3	8.57143
ASTN1	0	genome.wustl.edu	37	1	176833575	176833575	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	176833575	176833575	G	A	SNP	ASTN1	ENST00000367654	human	ensembl	74_37	-1	known	missense	c.3754	p.R1252W	1.000	NULL	superfamily_Fibronectin_type3,smart_EG-like_dom,smart_MACPF,pfscan_Fibronectin_type3	-	no_errors	ASTN1	HGNC	ENSG00000152092				66	0	0	42	19	31.1475
RCC2	0	genome.wustl.edu	37	1	17743117	17743117	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	17743117	17743117	G	A	SNP	RCC2	ENST00000375433	human	ensembl	74_37	-1	known	silent	c.885	p.I295	0.106	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,pfscan_Reg_chr_condens	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,prints_Reg_chr_condens,pfscan_Reg_chr_condens	-	no_errors	RCC2	HGNC	ENSG00000179051				71	0	0	55	5	8.33333
RALGPS2	0	genome.wustl.edu	37	1	178855202	178855202	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	178855202	178855202	C	T	SNP	RALGPS2	ENST00000367635	human	ensembl	74_37	+1	known	missense	c.1139	p.A380V	0.990	NULL	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_RasGRF_CDC25	-	no_errors	RALGPS2	HGNC	ENSG00000116191				116	0	0	64	28	30.4348
ABL2	0	genome.wustl.edu	37	1	179078138	179078138	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	179078138	179078138	C	T	SNP	ABL2	ENST00000502732	human	ensembl	74_37	-1	known	missense	c.2264	p.R755H	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_F-actin_binding,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,pfam_SH3-like_bac-type,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_F-actin_binding,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ABL2	HGNC	ENSG00000143322				61	0	0	66	17	20.4819
ABL2	0	genome.wustl.edu	37	1	179112110	179112110	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	179112110	179112110	G	T	SNP	ABL2	ENST00000512653	human	ensembl	74_37	-1	known	missense	c.70	p.L24M	0.981	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_F-actin_binding,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,pfam_SH3-like_bac-type,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_F-actin_binding,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ABL2	HGNC	ENSG00000143322				65	0	0	74	5	6.32911
AXDND1	0	genome.wustl.edu	37	1	179414261	179414261	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	179414261	179414261	C	T	SNP	AXDND1	ENST00000367618	human	ensembl	74_37	+1	known	nonsense	c.1720	p.R574*	0.941	NULL	pfam_Axonemal_dynein_light_chain	-	no_errors	AXDND1	HGNC	ENSG00000162779				103	0	0	76	7	8.43373
TDRD5	0	genome.wustl.edu	37	1	179620046	179620046	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	179620046	179620046	C	T	SNP	TDRD5	ENST00000444136	human	ensembl	74_37	+1	known	silent	c.1845	p.C615	1.000	NULL	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD5	HGNC	ENSG00000162782				120	0	0	90	26	22.4138
CEP350	0	genome.wustl.edu	37	1	180010286	180010286	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	180010286	180010286	G	A	SNP	CEP350	ENST00000367607	human	ensembl	74_37	+1	known	missense	c.4124	p.R1375H	1.000	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	-	no_errors	CEP350	HGNC	ENSG00000135837				40	0	0	30	11	26.8293
XPR1	0	genome.wustl.edu	37	1	180780557	180780557	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	180780557	180780557	G	T	SNP	XPR1	ENST00000367590	human	ensembl	74_37	+1	known	missense	c.696	p.W232C	1.000	NULL	pfam_EXS_C,pfam_SPX_N	-	no_errors	XPR1	HGNC	ENSG00000143324				58	0	0	28	14	33.3333
XPR1	0	genome.wustl.edu	37	1	180849411	180849411	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	180849411	180849411	C	T	SNP	XPR1	ENST00000367590	human	ensembl	74_37	+1	known	missense	c.2008	p.R670C	1.000	NULL	pfam_EXS_C,pfam_SPX_N	-	no_errors	XPR1	HGNC	ENSG00000143324				85	0	0	62	19	23.4568
STX6	0	genome.wustl.edu	37	1	180974435	180974435	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	180974435	180974435	G	A	SNP	STX6	ENST00000258301	human	ensembl	74_37	-1	known	missense	c.200	p.T67I	1.000	pfam_Syntaxin-6_N,superfamily_t-SNARE	pfam_Syntaxin-6_N,pfam_T_SNARE_dom,superfamily_t-SNARE,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX6	HGNC	ENSG00000135823				148	0	0	128	10	7.24638
CACNA1E	0	genome.wustl.edu	37	1	181706782	181706782	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	181706782	181706782	C	T	SNP	CACNA1E	ENST00000367573	human	ensembl	74_37	+1	known	missense	c.3544	p.R1182C	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216				78	0	0	61	13	17.5676
CACNA1E	0	genome.wustl.edu	37	1	181732597	181732597	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	181732597	181732597	G	A	SNP	CACNA1E	ENST00000367573	human	ensembl	74_37	+1	known	missense	c.4745	p.R1582H	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216				61	0	0	41	17	29.3103
RNASEL	0	genome.wustl.edu	37	1	182550411	182550411	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	182550411	182550411	C	T	SNP	RNASEL	ENST00000367559	human	ensembl	74_37	-1	known	silent	c.1854	p.L618	0.003	pfam_KEN_dom	pfam_Ankyrin_rpt,pfam_KEN_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Ankyrin_rpt-contain_dom,superfamily_Kinase-like_dom,smart_Ankyrin_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_PUG-dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_dom,prints_Ankyrin_rpt	-	no_errors	RNASEL	HGNC	ENSG00000135828				215	0	0	129	44	25.4335
SHCBP1L	0	genome.wustl.edu	37	1	182872293	182872293	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	182872293	182872293	C	T	SNP	SHCBP1L	ENST00000367547	human	ensembl	74_37	-1	known	missense	c.1591	p.A531T	1.000	superfamily_Pectin_lyase_fold/virulence,smart_Carb-bd_sugar_hydrolysis-dom,smart_PbH1	superfamily_Pectin_lyase_fold/virulence,smart_Carb-bd_sugar_hydrolysis-dom,smart_PbH1	-	no_errors	SHCBP1L	HGNC	ENSG00000157060				132	0	0	88	29	24.7863
LAMC1	0	genome.wustl.edu	37	1	183105532	183105532	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	183105532	183105532	C	T	SNP	LAMC1	ENST00000258341	human	ensembl	74_37	+1	known	missense	c.4126	p.R1376C	0.999	NULL	pfam_Laminin_N,pfam_EGF_laminin,pfam_Laminin_B_type_IV,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMC1	HGNC	ENSG00000135862				64	0	0	30	9	23.0769
EDEM3	0	genome.wustl.edu	37	1	184671996	184671996	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	184671996	184671996	G	A	SNP	EDEM3	ENST00000318130	human	ensembl	74_37	-1	known	missense	c.2338	p.R780W	1.000	NULL	pfam_Glyco_hydro_47,pfam_Protease-assoc_domain,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	EDEM3	HGNC	ENSG00000116406				75	0	0	51	15	22.7273
EDEM3	0	genome.wustl.edu	37	1	184692925	184692925	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	184692925	184692925	G	A	SNP	EDEM3	ENST00000318130	human	ensembl	74_37	-1	known	silent	c.813	p.G271	0.287	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47	pfam_Glyco_hydro_47,pfam_Protease-assoc_domain,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	EDEM3	HGNC	ENSG00000116406				124	0	0	90	34	27.4194
FAM129A	0	genome.wustl.edu	37	1	184764913	184764913	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	184764913	184764913	T	C	SNP	FAM129A	ENST00000367511	human	ensembl	74_37	-1	known	missense	c.1985	p.D662G	0.002	NULL	NULL	-	no_errors	FAM129A	HGNC	ENSG00000135842				52	0	0	40	12	23.0769
FAM129A	0	genome.wustl.edu	37	1	184777283	184777283	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	184777283	184777283	C	T	SNP	FAM129A	ENST00000367511	human	ensembl	74_37	-1	known	silent	c.1260	p.L420	0.999	NULL	NULL	-	no_errors	FAM129A	HGNC	ENSG00000135842				122	0	0	91	32	26.0163
TRMT1L	0	genome.wustl.edu	37	1	185112528	185112528	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	185112528	185112528	G	A	SNP	TRMT1L	ENST00000367506	human	ensembl	74_37	-1	known	nonsense	c.820	p.R274*	1.000	pfam_TRM1,pfam_tRNA_Trfase_Trm5/Tyw2	pfam_TRM1,pfam_tRNA_Trfase_Trm5/Tyw2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	TRMT1L	HGNC	ENSG00000121486				87	0	0	79	9	10.2273
HMCN1	0	genome.wustl.edu	37	1	185985117	185985117	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	185985117	185985117	C	T	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	missense	c.4937	p.A1646V	0.431	pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				92	0	0	62	15	19.4805
HMCN1	0	genome.wustl.edu	37	1	186092202	186092202	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	186092202	186092202	C	T	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	missense	c.12349	p.R4117C	0.843	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				62	0	0	50	15	23.0769
HMCN1	0	genome.wustl.edu	37	1	186147696	186147696	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	186147696	186147696	C	T	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	silent	c.16092	p.G5364	0.483	superfamily_Growth_fac_rcpt_N_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				267	1	0.373134	208	27	11.4894
HMCN1	0	genome.wustl.edu	37	1	186147722	186147722	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	186147722	186147722	C	T	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	missense	c.16118	p.A5373V	0.782	superfamily_Growth_fac_rcpt_N_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				292	0	0	192	51	20.9877
HMCN1	0	genome.wustl.edu	37	1	186158685	186158685	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	186158685	186158685	C	T	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	missense	c.16583	p.A5528V	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				93	0	0	70	4	5.40541
HMCN1	0	genome.wustl.edu	37	1	186158913	186158913	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	186158913	186158913	G	A	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	missense	c.16811	p.R5604H	1.000	superfamily_Cadherin-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				86	0	0	53	12	18.4615
TPR	0	genome.wustl.edu	37	1	186312540	186312540	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	186312540	186312540	C	T	SNP	TPR	ENST00000367478	human	ensembl	74_37	-1	known	missense	c.3668	p.R1223H	1.000	NULL	pfam_TPR_MLP1_2,superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	TPR	HGNC	ENSG00000047410				129	0	0	114	8	6.55738
TPR	0	genome.wustl.edu	37	1	186313197	186313197	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	186313197	186313197	C	T	SNP	TPR	ENST00000367478	human	ensembl	74_37	-1	known	missense	c.3443	p.R1148H	1.000	pfam_TPR_MLP1_2	pfam_TPR_MLP1_2,superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	TPR	HGNC	ENSG00000047410				44	0	0	32	12	27.2727
PTGS2	0	genome.wustl.edu	37	1	186647441	186647441	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	186647441	186647441	C	A	SNP	PTGS2	ENST00000367468	human	ensembl	74_37	-1	known	missense	c.409	p.A137S	1.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_EG-like_dom,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	PTGS2	HGNC	ENSG00000073756				79	0	0	68	8	10.5263
KLHDC7A	0	genome.wustl.edu	37	1	18808238	18808238	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	18808238	18808238	G	A	SNP	KLHDC7A	ENST00000400664	human	ensembl	74_37	+1	known	missense	c.763	p.A255T	0.011	NULL	pfam_Kelch_1,smart_Kelch_1	-	no_errors	KLHDC7A	HGNC	ENSG00000179023				75	0	0	38	22	36.6667
KLHDC7A	0	genome.wustl.edu	37	1	18808833	18808833	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	18808833	18808833	C	T	SNP	KLHDC7A	ENST00000400664	human	ensembl	74_37	+1	known	missense	c.1358	p.A453V	1.000	NULL	pfam_Kelch_1,smart_Kelch_1	-	no_errors	KLHDC7A	HGNC	ENSG00000179023				55	0	0	34	19	35.8491
BRINP3	0	genome.wustl.edu	37	1	190067862	190067862	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	190067862	190067862	C	T	SNP	BRINP3	ENST00000367462	human	ensembl	74_37	-1	known	nonsense	c.1587	p.W529*	1.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	BRINP3	HGNC	ENSG00000162670				103	0	0	125	7	5.30303
ALDH4A1	0	genome.wustl.edu	37	1	19199402	19199402	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	19199402	19199402	C	T	SNP	ALDH4A1	ENST00000290597	human	ensembl	74_37	-1	known	silent	c.1629	p.S543	0.290	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,tigrfam_1-pyrroline-5-COlate_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,tigrfam_1-pyrroline-5-COlate_DH	-	no_errors	ALDH4A1	HGNC	ENSG00000159423				91	0	0	55	6	9.83607
B3GALT2	0	genome.wustl.edu	37	1	193149563	193149563	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	193149563	193149563	C	T	SNP	B3GALT2	ENST00000367434	human	ensembl	74_37	-1	known	missense	c.1130	p.S377N	1.000	NULL	pfam_Glyco_trans_31	-	no_errors	B3GALT2	HGNC	ENSG00000162630				89	0	0	87	9	9.375
B3GALT2	0	genome.wustl.edu	37	1	193149774	193149774	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	193149774	193149774	G	A	SNP	B3GALT2	ENST00000367434	human	ensembl	74_37	-1	known	missense	c.919	p.R307C	0.991	pfam_Glyco_trans_31	pfam_Glyco_trans_31	-	no_errors	B3GALT2	HGNC	ENSG00000162630				69	0	0	59	10	14.4928
UBR4	0	genome.wustl.edu	37	1	19468163	19468163	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	19468163	19468163	T	C	SNP	UBR4	ENST00000375267	human	ensembl	74_37	-1	known	missense	c.8288	p.D2763G	1.000	superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481				108	0	0	84	17	16.8317
UBR4	0	genome.wustl.edu	37	1	19478277	19478277	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	19478277	19478277	G	A	SNP	UBR4	ENST00000375267	human	ensembl	74_37	-1	known	missense	c.7073	p.T2358I	1.000	superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481				74	0	0	47	22	31.8841
UBR4	0	genome.wustl.edu	37	1	19524463	19524463	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	19524463	19524463	G	A	SNP	UBR4	ENST00000375267	human	ensembl	74_37	-1	known	silent	c.729	p.N243	0.977	NULL	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481				173	0	0	131	24	15.4839
EMC1	0	genome.wustl.edu	37	1	19566419	19566419	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	19566419	19566419	G	A	SNP	EMC1	ENST00000477853	human	ensembl	74_37	-1	known	missense	c.847	p.P283S	0.997	NULL	pfam_DUF1620,superfamily_Quinonprotein_ADH-like_supfam	-	no_errors	EMC1	HGNC	ENSG00000127463				30	0	0	29	3	9.375
CFHR1	0	genome.wustl.edu	37	1	196801062	196801062	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	196801062	196801062	G	A	SNP	CFHR1	ENST00000320493	human	ensembl	74_37	+1	known	missense	c.926	p.R309H	0.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR1	HGNC	ENSG00000244414				90	0	0	60	6	9.09091
CRB1	0	genome.wustl.edu	37	1	197390881	197390881	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	197390881	197390881	C	A	SNP	CRB1	ENST00000543483	human	ensembl	74_37	+1	known	missense	c.812	p.A271D	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,pfscan_Laminin_G	pfam_EG-like_dom,pfam_Laminin_G,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	CRB1	HGNC	ENSG00000134376				171	0	0	138	13	8.60927
DENND1B	0	genome.wustl.edu	37	1	197704823	197704823	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	197704823	197704823	C	T	SNP	DENND1B	ENST00000477581	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DENND1B	HGNC	ENSG00000213047				27	0	0	36	8	18.1818
LHX9	0	genome.wustl.edu	37	1	197889133	197889133	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	197889133	197889133	C	T	SNP	LHX9	ENST00000367387	human	ensembl	74_37	+1	known	missense	c.206	p.A69V	1.000	pfscan_Znf_LIM	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LHX9	HGNC	ENSG00000143355				109	0	0	59	32	35.1648
PTPRC	0	genome.wustl.edu	37	1	198685904	198685904	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	198685904	198685904	A	C	SNP	PTPRC	ENST00000442510	human	ensembl	74_37	+1	known	missense	c.1385	p.Y462S	0.000	pirsf_Leukocyte_common_ag,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Leukocyte_common_ag,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Leukocyte_common_ag,pfam_PTP_recept_N,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRC	HGNC	ENSG00000081237				66	0	0	48	5	9.43396
PTPRC	0	genome.wustl.edu	37	1	198687371	198687371	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	198687371	198687371	G	A	SNP	PTPRC	ENST00000442510	human	ensembl	74_37	+1	known	silent	c.1599	p.S533	0.000	pirsf_Leukocyte_common_ag,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Leukocyte_common_ag,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Leukocyte_common_ag,pfam_PTP_recept_N,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRC	HGNC	ENSG00000081237				47	0	0	27	16	37.2093
KIF21B	0	genome.wustl.edu	37	1	200944027	200944027	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	200944027	200944027	C	T	SNP	KIF21B	ENST00000422435	human	ensembl	74_37	-1	known	silent	c.4629	p.A1543	0.027	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_P-loop_NTPase,superfamily_WD40_repeat_dom,superfamily_Prefoldin,smart_Kinesin_motor_dom,smart_WD40_repeat,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Kinesin_motor_dom	-	no_errors	KIF21B	HGNC	ENSG00000116852				54	0	0	35	13	27.0833
CACNA1S	0	genome.wustl.edu	37	1	201022696	201022696	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	201022696	201022696	C	T	SNP	CACNA1S	ENST00000362061	human	ensembl	74_37	-1	known	missense	c.3686	p.R1229H	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_VDCC_L_a1ssu	-	no_errors	CACNA1S	HGNC	ENSG00000081248				38	0	0	32	9	21.9512
PKP1	0	genome.wustl.edu	37	1	201252935	201252935	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	201252935	201252935	G	A	SNP	PKP1	ENST00000263946	human	ensembl	74_37	+1	known	silent	c.105	p.T35	1.000	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	PKP1	HGNC	ENSG00000081277				42	0	0	36	11	23.4043
NAV1	0	genome.wustl.edu	37	1	201763655	201763655	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	201763655	201763655	C	T	SNP	NAV1	ENST00000367296	human	ensembl	74_37	+1	known	missense	c.3467	p.A1156V	1.000	NULL	superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	NAV1	HGNC	ENSG00000134369				104	0	0	103	6	5.50459
RNPEP	0	genome.wustl.edu	37	1	201972515	201972515	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	201972515	201972515	C	T	SNP	RNPEP	ENST00000295640	human	ensembl	74_37	+1	known	missense	c.1577	p.A526V	0.000	pfam_Peptidase_M1_C,superfamily_ARM-type_fold	pfam_Peptidase_M1_N,pfam_Peptidase_M1_C,superfamily_ARM-type_fold,prints_Peptidase_M1_N	-	no_errors	RNPEP	HGNC	ENSG00000176393				44	0	0	32	3	8.57143
LGR6	0	genome.wustl.edu	37	1	202270002	202270002	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	202270002	202270002	G	A	SNP	LGR6	ENST00000367278	human	ensembl	74_37	+1	known	missense	c.811	p.A271T	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_GPCR_Rhodpsn,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn	-	no_errors	LGR6	HGNC	ENSG00000133067				207	0	0	161	60	27.1493
PPP1R12B	0	genome.wustl.edu	37	1	202418206	202418206	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	202418206	202418206	G	A	SNP	PPP1R12B	ENST00000336894	human	ensembl	74_37	+1	known	missense	c.1757	p.R586H	0.954	pirsf_Pase-1_reg_su_12A/B/C_euk	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pirsf_Pase-1_reg_su_12A/B/C_euk,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	PPP1R12B	HGNC	ENSG00000077157				80	0	0	62	5	7.46269
SYT2	0	genome.wustl.edu	37	1	202573729	202573729	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	202573729	202573729	C	T	SNP	SYT2	ENST00000367267	human	ensembl	74_37	-1	known	missense	c.199	p.A67T	1.000	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT2	HGNC	ENSG00000143858				46	0	0	19	7	26.9231
KDM5B	0	genome.wustl.edu	37	1	202704712	202704712	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	202704712	202704712	G	A	SNP	KDM5B	ENST00000367264	human	ensembl	74_37	-1	known	silent	c.3376	p.L1126	0.977	NULL	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_Znf_PHD-finger,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5B	HGNC	ENSG00000117139				100	0	0	65	31	32.2917
KDM5B	0	genome.wustl.edu	37	1	202746175	202746175	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	202746175	202746175	C	T	SNP	KDM5B	ENST00000367264	human	ensembl	74_37	-1	known	silent	c.252	p.T84	0.305	superfamily_ARID/BRIGHT_DNA-bd	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_Znf_PHD-finger,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5B	HGNC	ENSG00000117139				176	1	0.564972	107	26	19.5489
LOC148709	0	genome.wustl.edu	37	1	202842641	202842641	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	202842641	202842641	G	A	SNP	LOC148709	ENST00000456105	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-480I12.7	Clone_based_vega_gene	ENSG00000234996				59	0	0	54	5	8.47458
KLHL12	0	genome.wustl.edu	37	1	202863757	202863757	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	202863757	202863757	G	A	SNP	KLHL12	ENST00000435533	human	ensembl	74_37	-1	known	missense	c.1370	p.A457V	1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL12	HGNC	ENSG00000117153				215	1	0.462963	168	12	6.66667
ADIPOR1	0	genome.wustl.edu	37	1	202920110	202920110	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	202920110	202920110	A	G	SNP	ADIPOR1	ENST00000340990	human	ensembl	74_37	-1	known	missense	c.89	p.L30P	1.000	NULL	pfam_HlyIII-related	-	no_errors	ADIPOR1	HGNC	ENSG00000159346				112	0	0	83	21	20.1923
CYB5R1	0	genome.wustl.edu	37	1	202932907	202932907	+	RNA	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	202932907	202932907	T	C	SNP	CYB5R1	ENST00000497655	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CYB5R1	HGNC	ENSG00000159348				18	0	0	2	5	71.4286
ADORA1	0	genome.wustl.edu	37	1	203134421	203134421	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	203134421	203134421	C	T	SNP	ADORA1	ENST00000309502	human	ensembl	74_37	+1	known	missense	c.374	p.A125V	0.001	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Adenosn_rcpt,prints_GPCR_Rhodpsn,prints_Adeno_A1_rcpt	-	no_errors	ADORA1	HGNC	ENSG00000163485				14	0	0	10	7	41.1765
ZC3H11A	0	genome.wustl.edu	37	1	203798733	203798733	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	203798733	203798733	G	A	SNP	ZC3H11A	ENST00000332127	human	ensembl	74_37	+1	known	silent	c.453	p.T151	0.998	NULL	smart_Znf_CCCH	-	no_errors	ZC3H11A	HGNC	ENSG00000058673				173	0	0	192	11	5.41872
LINC00303	0	genome.wustl.edu	37	1	204006616	204006616	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	204006616	204006616	G	A	SNP	LINC00303	ENST00000367207	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	LINC00303	HGNC	ENSG00000176754				70	0	0	60	4	6.25
PLEKHA6	0	genome.wustl.edu	37	1	204226501	204226501	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	204226501	204226501	G	A	SNP	PLEKHA6	ENST00000272203	human	ensembl	74_37	-1	known	nonsense	c.1504	p.R502*	0.941	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA6	HGNC	ENSG00000143850				11	0	0	2	3	60
SLC45A3	0	genome.wustl.edu	37	1	205632060	205632060	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	205632060	205632060	T	C	SNP	SLC45A3	ENST00000367145	human	ensembl	74_37	-1	known	missense	c.859	p.T287A	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A3	HGNC	ENSG00000158715				22	0	0	40	4	9.09091
PM20D1	0	genome.wustl.edu	37	1	205814498	205814498	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	205814498	205814498	G	A	SNP	PM20D1	ENST00000367136	human	ensembl	74_37	-1	known	silent	c.444	p.G148	0.872	pfam_Peptidase_M20	pfam_Peptidase_M20,pfam_Peptidase_M20_dimer,superfamily_Peptidase_M20_dimer	-	no_errors	PM20D1	HGNC	ENSG00000162877				124	1	0.8	71	25	26.0417
CD34	0	genome.wustl.edu	37	1	208061099	208061099	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	208061099	208061099	G	A	SNP	CD34	ENST00000310833	human	ensembl	74_37	-1	known	missense	c.1142	p.A381V	1.000	pfam_CD34/Podocalyxin,prints_CD34	pfam_CD34/Podocalyxin,prints_CD34	-	no_errors	CD34	HGNC	ENSG00000174059				88	0	0	54	16	22.8571
PLXNA2	0	genome.wustl.edu	37	1	208212226	208212226	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	208212226	208212226	G	A	SNP	PLXNA2	ENST00000367033	human	ensembl	74_37	-1	known	missense	c.4604	p.A1535V	0.993	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA2	HGNC	ENSG00000076356				129	0	0	72	27	27.2727
MUL1	0	genome.wustl.edu	37	1	20827511	20827511	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	20827511	20827511	G	A	SNP	MUL1	ENST00000264198	human	ensembl	74_37	-1	known	missense	c.731	p.A244V	0.665	pfam_MULAN	pfam_MULAN,pfscan_Znf_RING	-	no_errors	MUL1	HGNC	ENSG00000090432				70	0	0	48	13	21.3115
PINK1	0	genome.wustl.edu	37	1	20975458	20975458	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	20975458	20975458	C	T	SNP	PINK1	ENST00000492302	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PINK1	HGNC	ENSG00000158828				25	0	0	24	8	25
HHAT	0	genome.wustl.edu	37	1	210591562	210591562	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	210591562	210591562	G	A	SNP	HHAT	ENST00000391905	human	ensembl	74_37	+1	known	missense	c.749	p.R250H	1.000	pfam_MBOAT_fam	pfam_MBOAT_fam	-	no_errors	HHAT	HGNC	ENSG00000054392				87	0	0	50	8	13.7931
KCNH1	0	genome.wustl.edu	37	1	210971031	210971031	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	210971031	210971031	C	A	SNP	KCNH1	ENST00000271751	human	ensembl	74_37	-1	known	missense	c.1734	p.E578D	1.000	superfamily_cNMP-bd-like	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH1	HGNC	ENSG00000143473				57	0	0	37	6	13.9535
RCOR3	0	genome.wustl.edu	37	1	211451507	211451507	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	211451507	211451507	A	G	SNP	RCOR3	ENST00000367005	human	ensembl	74_37	+1	known	missense	c.391	p.K131E	1.000	superfamily_Homeodomain-like,smart_SANT/Myb	pfam_SANT/Myb,pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	RCOR3	HGNC	ENSG00000117625				92	0	0	62	26	29.5455
NEK2	0	genome.wustl.edu	37	1	211842455	211842455	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	211842455	211842455	G	A	SNP	NEK2	ENST00000540251	human	ensembl	74_37	-1	known	nonsense	c.856	p.Q286*	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	NEK2	HGNC	ENSG00000117650				319	0	0	229	70	23.4114
DTL	0	genome.wustl.edu	37	1	212273912	212273912	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	212273912	212273912	C	T	SNP	DTL	ENST00000366991	human	ensembl	74_37	+1	known	missense	c.1580	p.P527L	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DTL	HGNC	ENSG00000143476				115	0	0	81	26	24.2991
RPS6KC1	0	genome.wustl.edu	37	1	213414415	213414415	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	213414415	213414415	G	T	SNP	RPS6KC1	ENST00000366960	human	ensembl	74_37	+1	known	missense	c.1596	p.E532D	0.786	NULL	pfam_Prot_kinase_dom,pfam_MIT,pfam_Phox,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Phox,smart_Phox,smart_MIT,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Phox,pfscan_Prot_kinase_dom	-	no_errors	RPS6KC1	HGNC	ENSG00000136643				58	0	0	46	14	23.3333
PROX1	0	genome.wustl.edu	37	1	214171100	214171100	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	214171100	214171100	C	T	SNP	PROX1	ENST00000261454	human	ensembl	74_37	+1	known	missense	c.1222	p.R408C	1.000	pfam_Homeo_prospero_dom	pfam_Homeo_prospero_dom,superfamily_Homeodomain-like	-	no_errors	PROX1	HGNC	ENSG00000117707				115	0	0	67	26	27.957
PROX1	0	genome.wustl.edu	37	1	214171117	214171117	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	214171117	214171117	C	T	SNP	PROX1	ENST00000261454	human	ensembl	74_37	+1	known	silent	c.1239	p.G413	1.000	pfam_Homeo_prospero_dom	pfam_Homeo_prospero_dom,superfamily_Homeodomain-like	-	no_errors	PROX1	HGNC	ENSG00000117707				111	0	0	103	8	7.20721
KCTD3	0	genome.wustl.edu	37	1	215793881	215793881	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	215793881	215793881	C	T	SNP	KCTD3	ENST00000259154	human	ensembl	74_37	+1	known	missense	c.2369	p.A790V	0.971	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,superfamily_WD40_repeat_dom,smart_BTB/POZ-like,smart_WD40_repeat,pfscan_BTB/POZ-like	-	no_errors	KCTD3	HGNC	ENSG00000136636				131	0	0	88	48	35.2941
USH2A	0	genome.wustl.edu	37	1	216040396	216040396	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	216040396	216040396	G	A	SNP	USH2A	ENST00000366943	human	ensembl	74_37	-1	known	missense	c.8798	p.A2933V	0.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781				85	0	0	56	18	24.3243
USH2A	0	genome.wustl.edu	37	1	216595645	216595645	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	216595645	216595645	A	C	SNP	USH2A	ENST00000366943	human	ensembl	74_37	-1	known	missense	c.34	p.F12V	0.005	NULL	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781				89	0	0	83	7	7.77778
GPATCH2	0	genome.wustl.edu	37	1	217671533	217671533	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	217671533	217671533	G	A	SNP	GPATCH2	ENST00000485274	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	GPATCH2	HGNC	ENSG00000092978				46	0	0	22	9	29.0323
NBPF3	0	genome.wustl.edu	37	1	21795287	21795287	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	21795287	21795287	G	A	SNP	NBPF3	ENST00000318249	human	ensembl	74_37	+1	known	silent	c.240	p.S80	0.000	NULL	pfam_NBPF_dom	-	no_errors	NBPF3	HGNC	ENSG00000142794				160	0	0	101	45	30.8219
TGFB2	0	genome.wustl.edu	37	1	218607501	218607501	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	218607501	218607501	C	T	SNP	TGFB2	ENST00000366929	human	ensembl	74_37	+1	known	silent	c.672	p.G224	0.637	pirsf_TGF-beta,pfam_TGF-b_N,prints_TGF-beta	pirsf_TGF-beta,pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C,prints_TGFb2,prints_TGF-beta	-	no_errors	TGFB2	HGNC	ENSG00000092969				142	0	0	83	84	50.2994
RAP1GAP	0	genome.wustl.edu	37	1	21926080	21926080	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	21926080	21926080	C	T	SNP	RAP1GAP	ENST00000290101	human	ensembl	74_37	-1	known	silent	c.1875	p.A625	0.998	NULL	pfam_Rap_GAP_dom,pfam_GoLoco_motif,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_Rap_GAP_dom	-	no_errors	RAP1GAP	HGNC	ENSG00000076864				31	0	0	16	4	20
USP48	0	genome.wustl.edu	37	1	22030030	22030030	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	22030030	22030030	A	G	SNP	USP48	ENST00000308271	human	ensembl	74_37	-1	known	missense	c.2597	p.V866A	1.000	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67,pfscan_Ubiquitin_supergroup	-	no_errors	USP48	HGNC	ENSG00000090686				142	0	0	80	22	21.5686
RAB3GAP2	0	genome.wustl.edu	37	1	220345285	220345285	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	220345285	220345285	C	T	SNP	RAB3GAP2	ENST00000358951	human	ensembl	74_37	-1	known	silent	c.2523	p.A841	0.014	NULL	superfamily_WD40_repeat_dom	-	no_errors	RAB3GAP2	HGNC	ENSG00000118873				79	0	0	75	22	22.6804
MARC1	0	genome.wustl.edu	37	1	220970031	220970031	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	220970031	220970031	G	A	SNP	MARC1	ENST00000366910	human	ensembl	74_37	+1	known	missense	c.496	p.A166T	0.950	pfam_MOSC_N,superfamily_Pyrv_Knase-like_insert_dom	pfam_MOSC_N,pfam_MoCF_Sase_C,superfamily_Pyrv_Knase-like_insert_dom	-	no_errors	MARC1	HGNC	ENSG00000186205				31	0	0	27	6	18.1818
DUSP10	0	genome.wustl.edu	37	1	221912575	221912575	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	221912575	221912575	C	T	SNP	DUSP10	ENST00000366899	human	ensembl	74_37	-1	known	missense	c.512	p.G171D	1.000	pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,superfamily_Blood-coag_inhib_Disintegrin,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP,prints_Atypical_DUSP	-	no_errors	DUSP10	HGNC	ENSG00000143507				93	0	0	42	15	26.3158
HHIPL2	0	genome.wustl.edu	37	1	222717211	222717211	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	222717211	222717211	G	A	SNP	HHIPL2	ENST00000343410	human	ensembl	74_37	-1	known	silent	c.642	p.N214	0.965	superfamily_Quinoprot_gluc/sorb_DH	pfam_Folate_rcpt-like,pfam_Glc/Sorbosone_DH,superfamily_Quinoprot_gluc/sorb_DH,superfamily_Saposin-like	-	no_errors	HHIPL2	HGNC	ENSG00000143512				38	0	0	28	5	15.1515
MIA3	0	genome.wustl.edu	37	1	222803003	222803003	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	222803003	222803003	G	A	SNP	MIA3	ENST00000344441	human	ensembl	74_37	+1	known	missense	c.2441	p.R814H	0.001	NULL	pfam_SH3_2,superfamily_SH3_domain	-	no_errors	MIA3	HGNC	ENSG00000154305				72	0	0	53	5	8.62069
BROX	0	genome.wustl.edu	37	1	222898866	222898866	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	222898866	222898866	C	T	SNP	BROX	ENST00000539697	human	ensembl	74_37	+1	known	silent	c.453	p.Y151	0.699	pfam_BRO1_dom,pfscan_BRO1_dom	pfam_BRO1_dom,pfscan_BRO1_dom	-	no_errors	BROX	HGNC	ENSG00000162819				61	0	0	40	21	34.4262
DISP1	0	genome.wustl.edu	37	1	223177973	223177973	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	223177973	223177973	C	T	SNP	DISP1	ENST00000284476	human	ensembl	74_37	+1	novel	silent	c.3234	p.R1078	1.000	pfam_Patched,pfam_MMPL_dom	pfam_Patched,pfam_MMPL_dom,pfscan_SSD	-	no_errors	DISP1	HGNC	ENSG00000154309				60	0	0	31	11	26.1905
DISP1	0	genome.wustl.edu	37	1	223178672	223178672	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	223178672	223178672	C	T	SNP	DISP1	ENST00000284476	human	ensembl	74_37	+1	novel	silent	c.3933	p.G1311	0.000	NULL	pfam_Patched,pfam_MMPL_dom,pfscan_SSD	-	no_errors	DISP1	HGNC	ENSG00000154309				123	1	0.806452	101	6	5.60748
CAPN2	0	genome.wustl.edu	37	1	223933116	223933116	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	223933116	223933116	G	A	SNP	CAPN2	ENST00000295006	human	ensembl	74_37	+1	known	missense	c.535	p.A179T	1.000	pfam_Peptidase_C2_calpain_cat,smart_Peptidase_C2_calpain_cat,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,pfscan_EF_hand_dom,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN2	HGNC	ENSG00000162909				58	0	0	39	11	22
EPHX1	0	genome.wustl.edu	37	1	226016576	226016576	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	226016576	226016576	G	A	SNP	EPHX1	ENST00000272167	human	ensembl	74_37	+1	known	missense	c.146	p.R49H	0.972	pfam_Epoxide_hydro_N,pirsf_Epoxide_hydrolase	pfam_Epoxide_hydro_N,pfam_AB_hydrolase_1,pirsf_Epoxide_hydrolase,prints_Epox_hydrolase-like	-	no_errors	EPHX1	HGNC	ENSG00000143819				17	0	0	7	3	30
PYCR2	0	genome.wustl.edu	37	1	226109900	226109900	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	226109900	226109900	G	A	SNP	PYCR2	ENST00000478402	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PYCR2	HGNC	ENSG00000143811				45	0	0	28	8	22.2222
H3F3A	0	genome.wustl.edu	37	1	226253372	226253372	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	226253372	226253372	G	A	SNP	H3F3A	ENST00000366813	human	ensembl	74_37	+1	known	silent	c.144	p.A48	0.996	superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	H3F3A	HGNC	ENSG00000163041				54	0	0	33	11	25
PARP1	0	genome.wustl.edu	37	1	226576444	226576444	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	226576444	226576444	G	A	SNP	PARP1	ENST00000366794	human	ensembl	74_37	-1	known	silent	c.630	p.G210	0.074	pirsf_NAD_ADPRT	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_Poly(ADP-ribose)pol_reg_dom,pfam_Znf_PARP,pfam_PADR1,pfam_WGR_domain,pfam_BRCT_dom,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_WGR_domain,superfamily_BRCT_dom,smart_BRCT_dom,smart_WGR_domain,pirsf_NAD_ADPRT,pfscan_BRCT_dom,pfscan_Znf_PARP,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP1	HGNC	ENSG00000143799				177	0	0	113	45	28.481
ITPKB	0	genome.wustl.edu	37	1	226923286	226923286	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	226923286	226923286	C	T	SNP	ITPKB	ENST00000272117	human	ensembl	74_37	-1	known	missense	c.1874	p.R625H	1.000	NULL	pfam_IPK	-	no_errors	ITPKB	HGNC	ENSG00000143772				90	0	0	77	6	7.22892
OBSCN	0	genome.wustl.edu	37	1	228459736	228459736	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	228459736	228459736	G	A	SNP	OBSCN	ENST00000570156	human	ensembl	74_37	+1	putative	missense	c.5800	p.A1934T	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				91	0	0	69	10	12.6582
OBSCN	0	genome.wustl.edu	37	1	228461716	228461716	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	228461716	228461716	G	A	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.5383	p.A1795T	0.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				17	0	0	7	3	30
OBSCN	0	genome.wustl.edu	37	1	228467553	228467553	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	228467553	228467553	G	A	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	silent	c.7428	p.E2476	1.000	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				15	0	0	4	3	42.8571
OBSCN	0	genome.wustl.edu	37	1	228506834	228506834	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	228506834	228506834	G	A	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.14381	p.R4794H	0.919	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				16	0	0	8	10	55.5556
HIST3H2A	0	genome.wustl.edu	37	1	228645350	228645350	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	228645350	228645350	C	T	SNP	HIST3H2A	ENST00000366695	human	ensembl	74_37	-1	known	missense	c.169	p.E57K	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST3H2A	HGNC	ENSG00000181218				51	0	0	36	4	10
CCSAP	0	genome.wustl.edu	37	1	229462504	229462504	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	229462504	229462504	G	A	SNP	CCSAP	ENST00000284617	human	ensembl	74_37	-1	known	missense	c.617	p.A206V	0.900	NULL	NULL	-	no_errors	CCSAP	HGNC	ENSG00000154429				82	0	0	75	6	7.40741
ABCB10	0	genome.wustl.edu	37	1	229676376	229676376	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	229676376	229676376	C	T	SNP	ABCB10	ENST00000344517	human	ensembl	74_37	-1	known	missense	c.1180	p.A394T	0.971	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB10	HGNC	ENSG00000135776				90	0	0	72	30	29.4118
TAF5L	0	genome.wustl.edu	37	1	229730363	229730363	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	229730363	229730363	G	A	SNP	TAF5L	ENST00000258281	human	ensembl	74_37	-1	known	missense	c.1451	p.A484V	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_TFIID-su_WD40-assoc_reg,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TAF5L	HGNC	ENSG00000135801				109	0	0	71	11	13.4146
URB2	0	genome.wustl.edu	37	1	229771702	229771702	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	229771702	229771702	G	A	SNP	URB2	ENST00000258243	human	ensembl	74_37	+1	known	missense	c.1342	p.A448T	1.000	NULL	pfam_Urb2/Npa2_C	-	no_errors	URB2	HGNC	ENSG00000135763				115	0	0	81	30	27.027
PGBD5	0	genome.wustl.edu	37	1	230492910	230492910	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	230492910	230492910	C	T	SNP	PGBD5	ENST00000321327	human	ensembl	74_37	-1	known	silent	c.579	p.T193	0.433	NULL	NULL	-	no_errors	PGBD5	HGNC	ENSG00000177614				62	0	0	35	9	20.4545
CAPN9	0	genome.wustl.edu	37	1	230910313	230910313	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	230910313	230910313	C	T	SNP	CAPN9	ENST00000271971	human	ensembl	74_37	+1	known	missense	c.889	p.R297C	0.735	pfam_Peptidase_C2_calpain_cat,smart_Peptidase_C2_calpain_cat,pfscan_Peptidase_C2_calpain_cat	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,smart_EF_hand_dom,prints_Calpain_cysteine_protease,pfscan_EF_hand_dom,pfscan_Peptidase_C2_calpain_cat	-	no_errors	CAPN9	HGNC	ENSG00000135773				76	0	0	48	12	20
TTC13	0	genome.wustl.edu	37	1	231090101	231090101	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	231090101	231090101	C	T	SNP	TTC13	ENST00000366661	human	ensembl	74_37	-1	known	missense	c.491	p.R164Q	0.998	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC13	HGNC	ENSG00000143643				34	0	0	30	7	18.9189
EPHB2	0	genome.wustl.edu	37	1	23111526	23111526	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	23111526	23111526	C	T	SNP	EPHB2	ENST00000400191	human	ensembl	74_37	+1	known	silent	c.768	p.C256	1.000	pirsf_Tyr_kinase_ephrin_rcpt,superfamily_Growth_fac_rcpt_N_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHB2	HGNC	ENSG00000133216				44	0	0	25	4	13.7931
EXOC8	0	genome.wustl.edu	37	1	231471819	231471819	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	231471819	231471819	T	C	SNP	EXOC8	ENST00000360394	human	ensembl	74_37	-1	known	missense	c.1673	p.Y558C	1.000	NULL	superfamily_Cullin_repeat-like_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	EXOC8	HGNC	ENSG00000116903				65	0	0	54	20	27.027
EPHB2	0	genome.wustl.edu	37	1	23191488	23191488	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	23191488	23191488	C	T	SNP	EPHB2	ENST00000400191	human	ensembl	74_37	+1	known	silent	c.1086	p.C362	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHB2	HGNC	ENSG00000133216				76	0	0	43	11	20.3704
TARBP1	0	genome.wustl.edu	37	1	234541923	234541923	+	RNA	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	234541923	234541923	A	G	SNP	TARBP1	ENST00000462259	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TARBP1	HGNC	ENSG00000059588				25	0	0	17	8	32
LYST	0	genome.wustl.edu	37	1	235971802	235971802	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	235971802	235971802	G	A	SNP	LYST	ENST00000389793	human	ensembl	74_37	-1	known	silent	c.2316	p.D772	1.000	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669				81	0	0	45	14	23.7288
NID1	0	genome.wustl.edu	37	1	236228195	236228195	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	236228195	236228195	G	A	SNP	NID1	ENST00000264187	human	ensembl	74_37	-1	known	missense	c.185	p.A62V	0.034	NULL	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd_dom,superfamily_GFP,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_G2_nidogen/fibulin_G2F,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID1	HGNC	ENSG00000116962				14	0	0	9	5	35.7143
HEATR1	0	genome.wustl.edu	37	1	236721600	236721600	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	236721600	236721600	G	A	SNP	HEATR1	ENST00000366582	human	ensembl	74_37	-1	known	missense	c.5141	p.A1714V	1.000	superfamily_ARM-type_fold	pfam_BP28_C_dom,pfam_U3snoRNP10,superfamily_ARM-type_fold	-	no_errors	HEATR1	HGNC	ENSG00000119285				75	0	0	61	9	12.8571
MTR	0	genome.wustl.edu	37	1	237054573	237054573	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	237054573	237054573	G	A	SNP	MTR	ENST00000366577	human	ensembl	74_37	+1	known	missense	c.3148	p.A1050T	0.009	superfamily_VitB12-dep_Met_synth_activ_dom,pirsf_MetH,pfscan_VitB12-dep_Met_synth_activ_dom,tigrfam_MetH	pfam_S_MeTrfase,pfam_VitB12-dep_Met_synth_activ_dom,pfam_Pterin-binding,pfam_Cbl-bd_cap,pfam_Cobalamin-bd,superfamily_VitB12-dep_Met_synth_activ_dom,superfamily_S_MeTrfase,superfamily_Dihydropteroate_synth-like,superfamily_Cobalamin-bd,superfamily_Cbl-bd_cap,pirsf_MetH,pfscan_VitB12-dep_Met_synth_activ_dom,pfscan_S_MeTrfase,pfscan_Pterin-binding,tigrfam_MetH	-	no_errors	MTR	HGNC	ENSG00000116984				108	0	0	73	29	28.4314
RYR2	0	genome.wustl.edu	37	1	237664107	237664107	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	237664107	237664107	C	T	SNP	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	missense	c.2294	p.S765L	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626				227	0	0	151	75	33.1858
RYR2	0	genome.wustl.edu	37	1	237774245	237774245	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	237774245	237774245	G	A	SNP	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	missense	c.4861	p.D1621N	0.901	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626				28	0	0	7	4	36.3636
RYR2	0	genome.wustl.edu	37	1	237780631	237780631	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	237780631	237780631	C	G	SNP	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	missense	c.5755	p.R1919G	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626				50	0	0	42	14	25
KMO	0	genome.wustl.edu	37	1	241695795	241695795	+	Silent	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	241695795	241695795	C	A	SNP	KMO	ENST00000366559	human	ensembl	74_37	+1	known	silent	c.51	p.G17	0.965	pfam_mOase_FAD-bd,prints_Rng_hydrolase-like	pfam_mOase_FAD-bd,prints_Rng_hydrolase-like	-	no_errors	KMO	HGNC	ENSG00000117009				115	0	0	96	25	20.6612
MYOM3	0	genome.wustl.edu	37	1	24410941	24410941	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	24410941	24410941	C	T	SNP	MYOM3	ENST00000475306	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MYOM3	HGNC	ENSG00000142661				93	0	0	64	22	25.5814
ZBTB18	0	genome.wustl.edu	37	1	244217659	244217659	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	244217659	244217659	C	T	SNP	ZBTB18	ENST00000358704	human	ensembl	74_37	+1	known	nonsense	c.583	p.R195*	1.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB18	HGNC	ENSG00000179456				58	0	0	45	6	11.7647
DESI2	0	genome.wustl.edu	37	1	244869074	244869074	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	244869074	244869074	C	T	SNP	DESI2	ENST00000302550	human	ensembl	74_37	+1	novel	missense	c.568	p.R190C	1.000	NULL	pfam_PPPDE_dom	-	no_errors	DESI2	HGNC	ENSG00000121644				35	0	0	22	13	37.1429
ZNF124	0	genome.wustl.edu	37	1	247320104	247320104	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	247320104	247320104	C	T	SNP	ZNF124	ENST00000543802	human	ensembl	74_37	-1	known	missense	c.820	p.A274T	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF124	HGNC	ENSG00000196418				89	0	0	104	10	8.77193
ZNF496	0	genome.wustl.edu	37	1	247492570	247492570	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	247492570	247492570	G	A	SNP	ZNF496	ENST00000366498	human	ensembl	74_37	-1	known	missense	c.311	p.A104V	0.994	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF496	HGNC	ENSG00000162714				42	0	0	22	14	38.8889
ZNF496	0	genome.wustl.edu	37	1	247492680	247492680	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	247492680	247492680	G	A	SNP	ZNF496	ENST00000366498	human	ensembl	74_37	-1	known	silent	c.201	p.C67	1.000	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF496	HGNC	ENSG00000162714				37	0	0	27	6	18.1818
OR2W5	0	genome.wustl.edu	37	1	247654661	247654661	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	247654661	247654661	G	A	SNP	OR2W5	ENST00000522351	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	OR2W5	HGNC	ENSG00000203664				53	0	0	37	10	21.2766
OR2L5	0	genome.wustl.edu	37	1	248185270	248185270	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	248185270	248185270	G	A	SNP	OR2L5	ENST00000355281	human	ensembl	74_37	+1	known	silent	c.21	p.T7	0.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2L5	HGNC	ENSG00000197454				113	0	0	92	9	8.91089
OR2M3	0	genome.wustl.edu	37	1	248366705	248366705	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	248366705	248366705	C	T	SNP	OR2M3	ENST00000456743	human	ensembl	74_37	+1	known	silent	c.336	p.C112	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2M3	HGNC	ENSG00000228198				280	0	0	247	16	6.08365
OR2T4	0	genome.wustl.edu	37	1	248525590	248525590	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	248525590	248525590	C	T	SNP	OR2T4	ENST00000366475	human	ensembl	74_37	+1	known	silent	c.708	p.V236	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T4	HGNC	ENSG00000196944				151	0	0	139	8	5.44218
SH3BP5L	0	genome.wustl.edu	37	1	249108714	249108714	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	249108714	249108714	G	A	SNP	SH3BP5L	ENST00000366472	human	ensembl	74_37	-1	known	silent	c.471	p.G157	0.039	pfam_SH3-bd_5	pfam_SH3-bd_5	-	no_errors	SH3BP5L	HGNC	ENSG00000175137				29	0	0	19	6	24
MMEL1	0	genome.wustl.edu	37	1	2527522	2527522	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	2527522	2527522	G	A	SNP	MMEL1	ENST00000378412	human	ensembl	74_37	-1	known	missense	c.1426	p.R476W	1.000	pfam_Peptidase_M13_N	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	MMEL1	HGNC	ENSG00000142606				148	0	0	92	36	28.125
LDLRAP1	0	genome.wustl.edu	37	1	25883728	25883728	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	25883728	25883728	C	T	SNP	LDLRAP1	ENST00000374338	human	ensembl	74_37	+1	known	silent	c.429	p.C143	1.000	pfam_PTB/PI_dom,pfam_PTB,smart_PTB/PI_dom,pfscan_PTB/PI_dom	pfam_PTB/PI_dom,pfam_PTB,smart_PTB/PI_dom,pfscan_PTB/PI_dom	-	no_errors	LDLRAP1	HGNC	ENSG00000157978				59	0	0	33	12	26.6667
EXTL1	0	genome.wustl.edu	37	1	26349584	26349584	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	26349584	26349584	G	A	SNP	EXTL1	ENST00000374280	human	ensembl	74_37	+1	known	missense	c.447	p.M149I	0.822	pfam_Exostosin	pfam_HexNAc_Trfase_a,pfam_Exostosin	-	no_errors	EXTL1	HGNC	ENSG00000158008				45	0	0	38	11	22.449
LIN28A	0	genome.wustl.edu	37	1	26737994	26737994	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	26737994	26737994	G	A	SNP	LIN28A	ENST00000254231	human	ensembl	74_37	+1	known	missense	c.149	p.R50H	1.000	pfam_CSP_DNA-bd,superfamily_NA-bd_OB-fold,smart_Cold_shock_prot,prints_CSP_DNA-bd	pfam_CSP_DNA-bd,pfam_Znf_CCHC,superfamily_NA-bd_OB-fold,superfamily_Znf_CCHC,smart_Cold_shock_prot,smart_Znf_CCHC,pfscan_Znf_CCHC,prints_CSP_DNA-bd	-	no_errors	LIN28A	HGNC	ENSG00000131914				38	0	0	17	5	22.7273
RPS6KA1	0	genome.wustl.edu	37	1	26900639	26900639	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	26900639	26900639	T	C	SNP	RPS6KA1	ENST00000531382	human	ensembl	74_37	+1	known	missense	c.2182	p.S728P	0.993	superfamily_Kinase-like_dom,pirsf_Ribosomal_S6_kinase_II	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RPS6KA1	HGNC	ENSG00000117676				65	0	0	30	8	21.0526
ARID1A	0	genome.wustl.edu	37	1	27105886	27105886	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	27105886	27105886	C	T	SNP	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	missense	c.5497	p.R1833C	0.999	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713				69	0	0	43	16	27.1186
C1orf172	0	genome.wustl.edu	37	1	27278023	27278023	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	27278023	27278023	C	T	SNP	C1orf172	ENST00000320567	human	ensembl	74_37	-1	known	silent	c.849	p.T283	0.119	NULL	NULL	-	no_errors	C1orf172	HGNC	ENSG00000175707				49	0	0	24	7	22.5806
GPR3	0	genome.wustl.edu	37	1	27720703	27720703	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	27720703	27720703	G	A	SNP	GPR3	ENST00000374024	human	ensembl	74_37	+1	known	missense	c.401	p.R134H	1.000	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_GPR_3/6/12_orphan,prints_GPR3,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	GPR3	HGNC	ENSG00000181773				113	0	0	68	15	18.0723
PPP1R8	0	genome.wustl.edu	37	1	28176610	28176610	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	28176610	28176610	C	T	SNP	PPP1R8	ENST00000311772	human	ensembl	74_37	+1	known	missense	c.709	p.R237C	0.983	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	PPP1R8	HGNC	ENSG00000117751				184	1	0.540541	143	29	16.8605
YTHDF2	0	genome.wustl.edu	37	1	29070189	29070189	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	29070189	29070189	C	T	SNP	YTHDF2	ENST00000373812	human	ensembl	74_37	+1	known	silent	c.1407	p.G469	0.990	pfam_YTH_domain,pfscan_YTH_domain	pfam_YTH_domain,pfscan_YTH_domain	-	no_errors	YTHDF2	HGNC	ENSG00000198492				59	0	0	33	12	26.6667
EPB41	0	genome.wustl.edu	37	1	29365769	29365769	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	29365769	29365769	G	C	SNP	EPB41	ENST00000343067	human	ensembl	74_37	+1	known	missense	c.1467	p.L489F	1.000	pirsf_Band_41_protein,pfam_FERM_PH-like_C,pfscan_FERM_domain	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB_dom,pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like,pfscan_FERM_domain	-	no_errors	EPB41	HGNC	ENSG00000159023				111	0	0	60	28	31.8182
MECR	0	genome.wustl.edu	37	1	29533360	29533360	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	29533360	29533360	T	C	SNP	MECR	ENST00000263702	human	ensembl	74_37	-1	known	missense	c.464	p.D155G	1.000	superfamily_GroES-like,smart_PKS_ER	pfam_ADH_C,pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER	-	no_errors	MECR	HGNC	ENSG00000116353				106	0	0	40	8	16.6667
FABP3	0	genome.wustl.edu	37	1	31838774	31838774	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	31838774	31838774	C	T	SNP	FABP3	ENST00000373713	human	ensembl	74_37	-1	known	missense	c.361	p.G121S	0.975	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	-	no_errors	FABP3	HGNC	ENSG00000121769				34	0	0	25	8	24.2424
TINAGL1	0	genome.wustl.edu	37	1	32042850	32042850	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	32042850	32042850	G	A	SNP	TINAGL1	ENST00000271064	human	ensembl	74_37	+1	known	missense	c.101	p.G34D	0.459	NULL	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C,pfscan_Somatomedin_B_dom	-	no_errors	TINAGL1	HGNC	ENSG00000142910				20	0	0	13	5	27.7778
TINAGL1	0	genome.wustl.edu	37	1	32049118	32049118	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	32049118	32049118	G	A	SNP	TINAGL1	ENST00000271064	human	ensembl	74_37	+1	known	missense	c.524	p.R175H	1.000	NULL	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C,pfscan_Somatomedin_B_dom	-	no_errors	TINAGL1	HGNC	ENSG00000142910				21	0	0	15	3	16.6667
SPOCD1	0	genome.wustl.edu	37	1	32265460	32265460	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	32265460	32265460	C	T	SNP	SPOCD1	ENST00000360482	human	ensembl	74_37	-1	known	missense	c.1733	p.G578D	0.000	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,superfamily_TFIIS_cen_dom,smart_TFS2M	-	no_errors	SPOCD1	HGNC	ENSG00000134668				54	0	0	35	5	12.5
EIF3I	0	genome.wustl.edu	37	1	32690021	32690021	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	32690021	32690021	G	A	SNP	EIF3I	ENST00000373586	human	ensembl	74_37	+1	known	silent	c.195	p.K65	0.994	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EIF3I	HGNC	ENSG00000084623				58	0	0	51	5	8.92857
HDAC1	0	genome.wustl.edu	37	1	32793077	32793077	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	32793077	32793077	G	A	SNP	HDAC1	ENST00000490081	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HDAC1	HGNC	ENSG00000116478				59	0	0	31	10	24.3902
SYNC	0	genome.wustl.edu	37	1	33160998	33160998	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	33160998	33160998	C	T	SNP	SYNC	ENST00000409190	human	ensembl	74_37	-1	known	missense	c.701	p.G234D	0.983	pfam_IF	pfam_IF	-	no_errors	SYNC	HGNC	ENSG00000162520				13	0	0	6	3	33.3333
PHC2	0	genome.wustl.edu	37	1	33836643	33836643	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	33836643	33836643	G	A	SNP	PHC2	ENST00000419414	human	ensembl	74_37	-1	known	missense	c.386	p.A129V	0.125	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM,pfscan_Znf_FCS	-	no_errors	PHC2	HGNC	ENSG00000134686				111	0	0	51	30	37.037
PHC2	0	genome.wustl.edu	37	1	33840979	33840979	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	33840979	33840979	C	T	SNP	PHC2	ENST00000419414	human	ensembl	74_37	-1	known	silent	c.162	p.R54	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM,pfscan_Znf_FCS	-	no_errors	PHC2	HGNC	ENSG00000134686				103	0	0	79	18	18.5567
ZSCAN20	0	genome.wustl.edu	37	1	33944899	33944899	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	33944899	33944899	G	A	SNP	ZSCAN20	ENST00000361328	human	ensembl	74_37	+1	known	missense	c.10	p.A4T	0.041	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_SANT/Myb,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN20	HGNC	ENSG00000121903				115	0	0	87	8	8.42105
CSMD2	0	genome.wustl.edu	37	1	33985194	33985194	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	33985194	33985194	T	C	SNP	CSMD2	ENST00000373381	human	ensembl	74_37	-1	known	missense	c.10820	p.D3607G	1.000	NULL	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904				270	0	0	130	58	30.8511
CSMD2	0	genome.wustl.edu	37	1	34128652	34128652	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	34128652	34128652	C	T	SNP	CSMD2	ENST00000373381	human	ensembl	74_37	-1	known	missense	c.4093	p.V1365M	0.997	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904				67	0	0	26	19	42.2222
WRAP73	0	genome.wustl.edu	37	1	3551635	3551635	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	3551635	3551635	G	A	SNP	WRAP73	ENST00000270708	human	ensembl	74_37	-1	known	missense	c.742	p.R248C	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WRAP73	HGNC	ENSG00000116213				152	0	0	119	8	6.29921
ZMYM4	0	genome.wustl.edu	37	1	35855553	35855553	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	35855553	35855553	C	T	SNP	ZMYM4	ENST00000314607	human	ensembl	74_37	+1	known	missense	c.2441	p.A814V	1.000	NULL	pfam_DUF3504,pfam_Znf_MYM,smart_TRASH_dom	-	no_errors	ZMYM4	HGNC	ENSG00000146463				54	0	0	58	9	13.4328
PSMB2	0	genome.wustl.edu	37	1	36074953	36074953	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	36074953	36074953	C	T	SNP	PSMB2	ENST00000373237	human	ensembl	74_37	-1	known	silent	c.342	p.A114	0.486	pfam_Proteasome_sua/b	pfam_Proteasome_sua/b	-	no_errors	PSMB2	HGNC	ENSG00000126067				55	0	0	42	4	8.69565
CLSPN	0	genome.wustl.edu	37	1	36203693	36203693	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	36203693	36203693	C	T	SNP	CLSPN	ENST00000318121	human	ensembl	74_37	-1	known	silent	c.3564	p.Q1188	1.000	NULL	NULL	-	no_errors	CLSPN	HGNC	ENSG00000092853				49	0	0	26	11	29.7297
TP73	0	genome.wustl.edu	37	1	3624161	3624161	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	3624161	3624161	G	A	SNP	TP73	ENST00000378295	human	ensembl	74_37	+1	known	missense	c.235	p.A79T	0.995	NULL	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_SAM_2,superfamily_p53-like_TF_DNA-bd,superfamily_SAM/pointed,superfamily_p53_tetrameristn,smart_SAM,prints_p53_tumour_suppressor	-	no_errors	TP73	HGNC	ENSG00000078900				71	0	0	45	12	21.0526
AGO1	0	genome.wustl.edu	37	1	36367904	36367904	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	36367904	36367904	G	A	SNP	AGO1	ENST00000373204	human	ensembl	74_37	+1	known	missense	c.1363	p.A455T	1.000	NULL	pfam_Piwi,pfam_PAZ_dom,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	AGO1	HGNC	ENSG00000092847				61	0	0	42	13	23.6364
ADPRHL2	0	genome.wustl.edu	37	1	36557565	36557565	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	36557565	36557565	G	A	SNP	ADPRHL2	ENST00000373178	human	ensembl	74_37	+1	known	missense	c.571	p.A191T	1.000	pfam_Ribosyl_crysJ1,superfamily_Ribosyl_crysJ1	pfam_Ribosyl_crysJ1,superfamily_Ribosyl_crysJ1	-	no_errors	ADPRHL2	HGNC	ENSG00000116863				48	0	0	28	4	12.5
CEP104	0	genome.wustl.edu	37	1	3768869	3768869	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	3768869	3768869	G	A	SNP	CEP104	ENST00000378230	human	ensembl	74_37	-1	known	missense	c.103	p.R35W	1.000	superfamily_Galactose-bd-like	superfamily_Galactose-bd-like,superfamily_ARM-type_fold	-	no_errors	CEP104	HGNC	ENSG00000116198				36	0	0	17	5	22.7273
EPHA10	0	genome.wustl.edu	37	1	38227345	38227345	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	38227345	38227345	G	A	SNP	EPHA10	ENST00000427468	human	ensembl	74_37	-1	known	silent	c.582	p.D194	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ephrin_rcpt_lig-bd_dom,superfamily_Galactose-bd-like,smart_Ephrin_rcpt_lig-bd_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_SAM/pointed,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA10	HGNC	ENSG00000183317				38	0	0	18	5	21.7391
MACF1	0	genome.wustl.edu	37	1	39797772	39797772	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	39797772	39797772	G	A	SNP	MACF1	ENST00000567887	human	ensembl	74_37	+1	putative	missense	c.5623	p.A1875T	0.999	pfam_Plectin_repeat,superfamily_RNaseH-like_dom,smart_Plectin_repeat	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_RNaseH-like_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	MACF1	HGNC	ENSG00000127603				106	0	0	54	24	30.7692
PPIE	0	genome.wustl.edu	37	1	40205879	40205879	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	40205879	40205879	C	T	SNP	PPIE	ENST00000324379	human	ensembl	74_37	+1	known	missense	c.74	p.A25V	1.000	pfam_RRM_dom,smart_RRM_dom,pirsf_Cyclophilin-type_PPIase_E,pfscan_RRM_dom	pfam_Cyclophilin-like_PPIase_dom,pfam_RRM_dom,superfamily_Cyclophilin-like_PPIase_dom,smart_RRM_dom,pirsf_Cyclophilin-type_PPIase_E,pfscan_RRM_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPIE	HGNC	ENSG00000084072				65	0	0	35	4	10.2564
MYCL	0	genome.wustl.edu	37	1	40363547	40363547	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	40363547	40363547	G	A	SNP	MYCL	ENST00000372816	human	ensembl	74_37	-1	known	missense	c.592	p.P198S	1.000	pfam_Tscrpt_reg_Myc_N	pfam_Tscrpt_reg_Myc_N,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom,prints_Tscrpt_reg_Myc	-	no_errors	MYCL	HGNC	ENSG00000116990				131	0	0	82	7	7.86517
RLF	0	genome.wustl.edu	37	1	40702413	40702413	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	40702413	40702413	G	A	SNP	RLF	ENST00000372771	human	ensembl	74_37	+1	known	missense	c.2039	p.R680H	0.998	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RLF	HGNC	ENSG00000117000				113	1	0.877193	90	28	23.7288
SMAP2	0	genome.wustl.edu	37	1	40887722	40887722	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	40887722	40887722	C	T	SNP	SMAP2	ENST00000372718	human	ensembl	74_37	+1	known	silent	c.1239	p.G413	0.623	NULL	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	SMAP2	HGNC	ENSG00000084070				94	0	0	62	17	21.519
EXO5	0	genome.wustl.edu	37	1	40981166	40981166	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	40981166	40981166	C	T	SNP	EXO5	ENST00000296380	human	ensembl	74_37	+1	known	missense	c.950	p.A317V	0.009	pfam_EXOV	pfam_EXOV	-	no_errors	EXO5	HGNC	ENSG00000164002				70	0	0	53	7	11.6667
CTPS1	0	genome.wustl.edu	37	1	41463094	41463094	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	41463094	41463094	A	G	SNP	CTPS1	ENST00000372616	human	ensembl	74_37	+1	known	missense	c.901	p.I301V	1.000	tigrfam_CTP_synthase	pfam_CTP_synthase_N,pfam_GATASE,pfam_Peptidase_C26,superfamily_P-loop_NTPase,tigrfam_CTP_synthase	-	no_errors	CTPS1	HGNC	ENSG00000171793				108	0	0	94	8	7.84314
SLFNL1	0	genome.wustl.edu	37	1	41483534	41483534	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	41483534	41483534	G	A	SNP	SLFNL1	ENST00000302946	human	ensembl	74_37	-1	known	missense	c.730	p.R244W	1.000	pfam_ATPase_AAA-4	pfam_ATPase_AAA-4	-	no_errors	SLFNL1	HGNC	ENSG00000171790				30	0	0	14	4	22.2222
FOXJ3	0	genome.wustl.edu	37	1	42664858	42664858	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	42664858	42664858	C	T	SNP	FOXJ3	ENST00000361346	human	ensembl	74_37	-1	known	missense	c.674	p.R225H	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXJ3	HGNC	ENSG00000198815				110	0	0	81	19	19
SLC2A1	0	genome.wustl.edu	37	1	43396803	43396803	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	43396803	43396803	C	T	SNP	SLC2A1	ENST00000426263	human	ensembl	74_37	-1	known	silent	c.189	p.T63	0.021	pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt,prints_Glu_transpt_1,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A1	HGNC	ENSG00000117394				65	0	0	51	4	7.27273
SZT2	0	genome.wustl.edu	37	1	43889992	43889992	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	43889992	43889992	C	T	SNP	SZT2	ENST00000562955	human	ensembl	74_37	+1	known	missense	c.2360	p.A787V	1.000	NULL	NULL	-	no_errors	SZT2	HGNC	ENSG00000198198				50	0	0	28	7	20
SZT2	0	genome.wustl.edu	37	1	43896333	43896333	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	43896333	43896333	C	T	SNP	SZT2	ENST00000562955	human	ensembl	74_37	+1	known	silent	c.4476	p.G1492	0.009	NULL	NULL	-	no_errors	SZT2	HGNC	ENSG00000198198				118	0	0	66	29	30.5263
SZT2	0	genome.wustl.edu	37	1	43904428	43904428	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	43904428	43904428	G	A	SNP	SZT2	ENST00000562955	human	ensembl	74_37	+1	known	silent	c.6396	p.T2132	0.000	NULL	NULL	-	no_errors	SZT2	HGNC	ENSG00000198198				52	0	0	19	10	34.4828
PTPRF	0	genome.wustl.edu	37	1	44086246	44086246	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	44086246	44086246	C	T	SNP	PTPRF	ENST00000359947	human	ensembl	74_37	+1	known	missense	c.5360	p.A1787V	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRF	HGNC	ENSG00000142949				105	0	0	73	22	23.1579
KDM4A	0	genome.wustl.edu	37	1	44128589	44128589	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	44128589	44128589	C	T	SNP	KDM4A	ENST00000372396	human	ensembl	74_37	+1	known	missense	c.454	p.R152W	1.000	smart_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4A	HGNC	ENSG00000066135				108	0	0	61	25	29.0698
KDM4A	0	genome.wustl.edu	37	1	44137305	44137305	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	44137305	44137305	G	A	SNP	KDM4A	ENST00000372396	human	ensembl	74_37	+1	known	missense	c.1493	p.R498H	0.930	NULL	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4A	HGNC	ENSG00000066135				83	0	0	48	31	39.2405
B4GALT2	0	genome.wustl.edu	37	1	44446911	44446911	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	44446911	44446911	G	A	SNP	B4GALT2	ENST00000309519	human	ensembl	74_37	+1	known	missense	c.166	p.A56T	1.000	NULL	pfam_Galactosyl_T_C,prints_Galactosyl_T	-	no_errors	B4GALT2	HGNC	ENSG00000117411				43	0	0	35	13	27.0833
SLC6A9	0	genome.wustl.edu	37	1	44467145	44467145	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	44467145	44467145	C	T	SNP	SLC6A9	ENST00000360584	human	ensembl	74_37	-1	known	missense	c.1336	p.E446K	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_glycine_GLY1	-	no_errors	SLC6A9	HGNC	ENSG00000196517				90	0	0	44	16	26.6667
SLC6A9	0	genome.wustl.edu	37	1	44468044	44468044	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	44468044	44468044	G	A	SNP	SLC6A9	ENST00000360584	human	ensembl	74_37	-1	known	silent	c.1122	p.C374	0.977	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_glycine_GLY1	-	no_errors	SLC6A9	HGNC	ENSG00000196517				67	0	0	50	5	9.09091
RNF220	0	genome.wustl.edu	37	1	44877906	44877906	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	44877906	44877906	G	A	SNP	RNF220	ENST00000355387	human	ensembl	74_37	+1	known	missense	c.137	p.R46Q	1.000	NULL	superfamily_Peptidase_M20_dimer,pfscan_Znf_RING	-	no_errors	RNF220	HGNC	ENSG00000187147				191	0	0	160	14	8.04598
RNF220	0	genome.wustl.edu	37	1	45110700	45110700	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	45110700	45110700	C	T	SNP	RNF220	ENST00000355387	human	ensembl	74_37	+1	known	silent	c.1257	p.G419	0.990	NULL	superfamily_Peptidase_M20_dimer,pfscan_Znf_RING	-	no_errors	RNF220	HGNC	ENSG00000187147				25	0	0	26	6	18.75
BEND5	0	genome.wustl.edu	37	1	49208298	49208298	+	Silent	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	49208298	49208298	G	T	SNP	BEND5	ENST00000371833	human	ensembl	74_37	-1	known	silent	c.891	p.G297	1.000	NULL	pfam_BEN_domain	-	no_errors	BEND5	HGNC	ENSG00000162373				106	0	0	59	22	27.1605
FAF1	0	genome.wustl.edu	37	1	51050377	51050377	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	51050377	51050377	G	A	SNP	FAF1	ENST00000371778	human	ensembl	74_37	-1	known	missense	c.947	p.A316V	1.000	NULL	pfam_UBX,superfamily_UBA-like,smart_UAS,smart_UBX,pfscan_UBX	-	no_errors	FAF1	HGNC	ENSG00000185104				137	0	0	102	31	23.3083
TTC39A	0	genome.wustl.edu	37	1	51767382	51767382	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	51767382	51767382	G	A	SNP	TTC39A	ENST00000447632	human	ensembl	74_37	-1	known	silent	c.1023	p.C341	1.000	pfam_OMP_IML2_mit/TPR_39,smart_TPR_repeat	pfam_OMP_IML2_mit/TPR_39,smart_TPR_repeat	-	no_errors	TTC39A	HGNC	ENSG00000085831				48	0	0	21	9	30
CC2D1B	0	genome.wustl.edu	37	1	52819265	52819265	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	52819265	52819265	G	A	SNP	CC2D1B	ENST00000371586	human	ensembl	74_37	-1	known	missense	c.2503	p.R835W	1.000	NULL	pfam_C2_dom,superfamily_C2_dom,smart_DM14,smart_C2_dom	-	no_errors	CC2D1B	HGNC	ENSG00000154222				19	0	0	14	5	26.3158
ORC1	0	genome.wustl.edu	37	1	52851607	52851607	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	52851607	52851607	C	T	SNP	ORC1	ENST00000371566	human	ensembl	74_37	-1	known	silent	c.1398	p.T466	0.689	NULL	pfam_BAH_dom,pfam_ATPase_AAA_core,pfam_Cdc6_C_dom,pfam_DUF2075,superfamily_P-loop_NTPase,smart_BAH_dom,smart_AAA+_ATPase,pfscan_BAH_dom	-	no_errors	ORC1	HGNC	ENSG00000085840				22	0	0	20	3	13.0435
ORC1	0	genome.wustl.edu	37	1	52861918	52861918	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	52861918	52861918	G	A	SNP	ORC1	ENST00000371566	human	ensembl	74_37	-1	known	missense	c.521	p.A174V	0.848	NULL	pfam_BAH_dom,pfam_ATPase_AAA_core,pfam_Cdc6_C_dom,pfam_DUF2075,superfamily_P-loop_NTPase,smart_BAH_dom,smart_AAA+_ATPase,pfscan_BAH_dom	-	no_errors	ORC1	HGNC	ENSG00000085840				97	0	0	85	7	7.6087
ZCCHC11	0	genome.wustl.edu	37	1	52954594	52954594	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	52954594	52954594	C	T	SNP	ZCCHC11	ENST00000257177	human	ensembl	74_37	-1	known	missense	c.1502	p.R501H	1.000	NULL	pfam_PAP_assoc,pfam_Znf_CCHC,pfam_Nucleotidyltransferase,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC11	HGNC	ENSG00000134744				122	0	0	93	10	9.70874
USP24	0	genome.wustl.edu	37	1	55562761	55562761	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	55562761	55562761	G	A	SNP	USP24	ENST00000407756	human	ensembl	74_37	-1	known	nonsense	c.5320	p.R1774*	0.757	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,superfamily_UBA-like,superfamily_ARM-type_fold,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Peptidase_C19/C67	-	no_errors	USP24	HGNC	ENSG00000162402				60	0	0	37	13	26
CYP2J2	0	genome.wustl.edu	37	1	60375619	60375619	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	60375619	60375619	A	G	SNP	CYP2J2	ENST00000371204	human	ensembl	74_37	-1	known	missense	c.698	p.F233S	1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2J-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B,prints_Cyt_P450_E_grp-I_CYP2D-like	-	no_errors	CYP2J2	HGNC	ENSG00000134716				53	0	0	53	5	8.62069
INADL	0	genome.wustl.edu	37	1	62293227	62293227	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	62293227	62293227	G	A	SNP	INADL	ENST00000371158	human	ensembl	74_37	+1	known	missense	c.1952	p.R651H	0.001	superfamily_PDZ	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_L27,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	INADL	HGNC	ENSG00000132849				139	0	0	118	26	18.0556
DOCK7	0	genome.wustl.edu	37	1	62993865	62993865	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	62993865	62993865	A	G	SNP	DOCK7	ENST00000251157	human	ensembl	74_37	-1	known	missense	c.3893	p.V1298A	1.000	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N,superfamily_ARM-type_fold	-	no_errors	DOCK7	HGNC	ENSG00000116641				52	0	0	38	12	24
DOCK7	0	genome.wustl.edu	37	1	63113777	63113777	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	63113777	63113777	C	T	SNP	DOCK7	ENST00000251157	human	ensembl	74_37	-1	known	silent	c.732	p.E244	1.000	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N,superfamily_ARM-type_fold	-	no_errors	DOCK7	HGNC	ENSG00000116641				110	0	0	101	11	9.82143
GPR153	0	genome.wustl.edu	37	1	6311422	6311422	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	6311422	6311422	C	A	SNP	GPR153	ENST00000377893	human	ensembl	74_37	-1	known	missense	c.955	p.A319S	1.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPR153,prints_GCR_153/162	-	no_errors	GPR153	HGNC	ENSG00000158292				66	0	0	39	17	30.3571
ITGB3BP	0	genome.wustl.edu	37	1	63912521	63912521	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	63912521	63912521	C	T	SNP	ITGB3BP	ENST00000371092	human	ensembl	74_37	-1	known	missense	c.608	p.R203H	0.001	pfam_CENP-R	pfam_CENP-R	-	no_errors	ITGB3BP	HGNC	ENSG00000142856				79	0	0	47	13	21.6667
EFCAB7	0	genome.wustl.edu	37	1	63999206	63999206	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	63999206	63999206	C	T	SNP	EFCAB7	ENST00000371088	human	ensembl	74_37	+1	known	missense	c.568	p.R190C	1.000	NULL	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	EFCAB7	HGNC	ENSG00000203965				256	0	0	205	12	5.52995
EFCAB7	0	genome.wustl.edu	37	1	64034139	64034139	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	64034139	64034139	C	T	SNP	EFCAB7	ENST00000371088	human	ensembl	74_37	+1	known	silent	c.1656	p.I552	0.000	NULL	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	EFCAB7	HGNC	ENSG00000203965				71	0	0	49	10	16.9492
JAK1	0	genome.wustl.edu	37	1	65344791	65344791	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	65344791	65344791	G	A	SNP	JAK1	ENST00000342505	human	ensembl	74_37	-1	known	silent	c.246	p.D82	0.996	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,smart_Band_41_domain,pfscan_FERM_domain	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak1,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_SH2,pfscan_Prot_kinase_dom	-	no_errors	JAK1	HGNC	ENSG00000162434				110	0	0	75	8	9.63855
DNAJC6	0	genome.wustl.edu	37	1	65851520	65851520	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	65851520	65851520	G	A	SNP	DNAJC6	ENST00000371069	human	ensembl	74_37	+1	known	missense	c.926	p.R309H	1.000	pfam_Tensin_phosphatase_C2-dom,superfamily_C2_dom,pfscan_Tensin_phosphatase_C2-dom	pfam_Tensin_phosphatase_C2-dom,pfam_DnaJ_domain,superfamily_DnaJ_domain,superfamily_C2_dom,smart_DnaJ_domain,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom,pfscan_DnaJ_domain	-	no_errors	DNAJC6	HGNC	ENSG00000116675				98	0	0	54	26	32.5
ZBTB48	0	genome.wustl.edu	37	1	6642155	6642155	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	6642155	6642155	G	A	SNP	ZBTB48	ENST00000377674	human	ensembl	74_37	+1	known	missense	c.728	p.G243D	0.937	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB48	HGNC	ENSG00000204859				68	0	0	37	14	27.451
PHF13	0	genome.wustl.edu	37	1	6680350	6680350	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	6680350	6680350	G	A	SNP	PHF13	ENST00000377648	human	ensembl	74_37	+1	known	missense	c.629	p.R210Q	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD	-	no_errors	PHF13	HGNC	ENSG00000116273				24	0	0	19	4	17.3913
IL23R	0	genome.wustl.edu	37	1	67724598	67724598	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	67724598	67724598	T	G	SNP	IL23R	ENST00000347310	human	ensembl	74_37	+1	known	missense	c.1677	p.S559R	0.000	NULL	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL23R	HGNC	ENSG00000162594				108	0	0	75	29	27.8846
IL12RB2	0	genome.wustl.edu	37	1	67838350	67838350	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	67838350	67838350	A	G	SNP	IL12RB2	ENST00000262345	human	ensembl	74_37	+1	known	missense	c.1601	p.K534R	0.005	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_IgC2-like_lig-bd,pfam_IL-6_rcpt_alpha-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL12RB2	HGNC	ENSG00000081985				59	0	0	55	25	31.25
IL12RB2	0	genome.wustl.edu	37	1	67852280	67852280	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	67852280	67852280	C	T	SNP	IL12RB2	ENST00000262345	human	ensembl	74_37	+1	known	missense	c.1874	p.A625V	0.000	NULL	pfam_Fibronectin_type3,pfam_IgC2-like_lig-bd,pfam_IL-6_rcpt_alpha-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL12RB2	HGNC	ENSG00000081985				111	0	0	87	23	20.9091
WLS	0	genome.wustl.edu	37	1	68591897	68591897	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	68591897	68591897	C	T	SNP	WLS	ENST00000498615	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	WLS	HGNC	ENSG00000116729				47	0	0	31	2	6.06061
WLS	0	genome.wustl.edu	37	1	68659743	68659743	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	68659743	68659743	A	C	SNP	WLS	ENST00000540432	human	ensembl	74_37	-1	known	missense	c.274	p.F92V	1.000	NULL	NULL	-	no_errors	WLS	HGNC	ENSG00000116729				85	0	0	49	24	32.8767
LRRC7	0	genome.wustl.edu	37	1	70478695	70478695	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	70478695	70478695	C	T	SNP	LRRC7	ENST00000035383	human	ensembl	74_37	+1	known	silent	c.1059	p.R353	0.999	NULL	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	LRRC7	HGNC	ENSG00000033122				136	0	0	104	26	20
SRSF11	0	genome.wustl.edu	37	1	70700384	70700384	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	70700384	70700384	C	T	SNP	SRSF11	ENST00000370950	human	ensembl	74_37	+1	known	silent	c.453	p.G151	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SRSF11	HGNC	ENSG00000116754				83	0	0	68	12	15
ANKRD13C	0	genome.wustl.edu	37	1	70766510	70766510	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	70766510	70766510	C	T	SNP	ANKRD13C	ENST00000370944	human	ensembl	74_37	-1	known	silent	c.858	p.A286	0.921	pfam_ANKRD13	pfam_ANKRD13,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD13C	HGNC	ENSG00000118454				44	0	0	20	10	33.3333
MSH4	0	genome.wustl.edu	37	1	76272758	76272758	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	76272758	76272758	G	A	SNP	MSH4	ENST00000263187	human	ensembl	74_37	+1	known	missense	c.520	p.A174T	1.000	pfam_DNA_mmatch_repair_MutS_con_dom,superfamily_DNA_mmatch_repair_MutS_con_dom	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mmatch_repair_MutS_con_dom,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_P-loop_NTPase,superfamily_DNA_mmatch_repair_MutS_con_dom,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C	-	no_errors	MSH4	HGNC	ENSG00000057468				131	0	0	77	6	7.22892
ST6GALNAC3	0	genome.wustl.edu	37	1	76877955	76877955	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	76877955	76877955	G	A	SNP	ST6GALNAC3	ENST00000328299	human	ensembl	74_37	+1	known	missense	c.476	p.R159H	1.000	pfam_Glyco_trans_29	pfam_Glyco_trans_29	-	no_errors	ST6GALNAC3	HGNC	ENSG00000184005				148	0	0	109	7	6.03448
CAMTA1	0	genome.wustl.edu	37	1	7700554	7700554	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	7700554	7700554	A	C	SNP	CAMTA1	ENST00000303635	human	ensembl	74_37	+1	known	missense	c.605	p.D202A	1.000	NULL	pfam_CG-1_dom,pfam_IPT,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA1	HGNC	ENSG00000171735				81	0	0	43	26	37.6812
CAMTA1	0	genome.wustl.edu	37	1	7797322	7797322	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	7797322	7797322	C	T	SNP	CAMTA1	ENST00000303635	human	ensembl	74_37	+1	known	missense	c.3350	p.A1117V	1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_CG-1_dom,pfam_IPT,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA1	HGNC	ENSG00000171735				136	0	0	93	5	5.10204
FAM73A	0	genome.wustl.edu	37	1	78272690	78272690	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	78272690	78272690	G	A	SNP	FAM73A	ENST00000370791	human	ensembl	74_37	+1	known	missense	c.541	p.A181T	1.000	pfam_DUF2217	pfam_DUF2217	-	no_errors	FAM73A	HGNC	ENSG00000180488				122	0	0	120	7	5.51181
TNFRSF9	0	genome.wustl.edu	37	1	7993308	7993308	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	7993308	7993308	G	A	SNP	TNFRSF9	ENST00000377507	human	ensembl	74_37	-1	known	missense	c.593	p.A198V	0.000	NULL	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_9	-	no_errors	TNFRSF9	HGNC	ENSG00000049249				47	0	0	34	4	10.5263
RERE	0	genome.wustl.edu	37	1	8425885	8425885	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	8425885	8425885	C	T	SNP	RERE	ENST00000337907	human	ensembl	74_37	-1	known	silent	c.1434	p.P478	0.955	NULL	pfam_Atrophin-like,pfam_BAH_dom,pfam_ELM2_dom,pfam_Znf_GATA,superfamily_Homeodomain-like,smart_BAH_dom,smart_SANT/Myb,smart_Znf_GATA,pfscan_BAH_dom,pfscan_ELM2_dom	-	no_errors	RERE	HGNC	ENSG00000142599				53	0	0	36	15	29.4118
RPF1	0	genome.wustl.edu	37	1	84961086	84961086	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	84961086	84961086	G	A	SNP	RPF1	ENST00000370654	human	ensembl	74_37	+1	known	missense	c.647	p.G216D	1.000	pfam_Brix,superfamily_Anticodon-bd,smart_Brix,pfscan_Brix	pfam_Brix,superfamily_Anticodon-bd,smart_Brix,pfscan_Brix	-	no_errors	RPF1	HGNC	ENSG00000117133				44	0	0	37	6	13.9535
WDR63	0	genome.wustl.edu	37	1	85559307	85559307	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	85559307	85559307	G	A	SNP	WDR63	ENST00000294664	human	ensembl	74_37	+1	known	missense	c.1024	p.V342I	0.021	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR63	HGNC	ENSG00000162643				200	0	0	132	44	25
COL24A1	0	genome.wustl.edu	37	1	86590944	86590944	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	86590944	86590944	C	T	SNP	COL24A1	ENST00000370571	human	ensembl	74_37	-1	known	missense	c.1075	p.A359T	0.002	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL24A1	HGNC	ENSG00000171502				88	0	0	90	6	6.25
COL24A1	0	genome.wustl.edu	37	1	86591810	86591810	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	86591810	86591810	G	A	SNP	COL24A1	ENST00000370571	human	ensembl	74_37	-1	known	missense	c.209	p.P70L	0.982	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL24A1	HGNC	ENSG00000171502				71	0	0	67	18	21.1765
CLCA2	0	genome.wustl.edu	37	1	86900199	86900199	+	Splice_Site	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	86900199	86900199	A	G	SNP	CLCA2	ENST00000370565	human	ensembl	74_37	+1	known	splice_site	c.745-2	e6-2	0.995	-	-	-	no_errors	CLCA2	HGNC	ENSG00000137975				69	0	0	42	24	36.3636
SEP15	0	genome.wustl.edu	37	1	87333766	87333766	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	87333766	87333766	T	C	SNP	SEP15	ENST00000401030	human	ensembl	74_37	-1	known	missense	c.368	p.N123S	1.000	NULL	NULL	-	no_errors	SEP15	Uniprot_gn	ENSG00000183291				69	0	0	47	20	29.8507
NOC2L	0	genome.wustl.edu	37	1	883877	883877	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	883877	883877	G	A	SNP	NOC2L	ENST00000327044	human	ensembl	74_37	-1	known	missense	c.1550	p.A517V	0.991	pfam_Noc2,superfamily_ARM-type_fold	pfam_Noc2,superfamily_ARM-type_fold	-	no_errors	NOC2L	HGNC	ENSG00000188976				57	0	0	27	5	15.625
GBP7	0	genome.wustl.edu	37	1	89630432	89630432	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	89630432	89630432	G	A	SNP	GBP7	ENST00000294671	human	ensembl	74_37	-1	known	silent	c.300	p.G100	1.000	pfam_Guanylate-bd_N,superfamily_P-loop_NTPase	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C,superfamily_P-loop_NTPase	-	no_errors	GBP7	HGNC	ENSG00000213512				71	0	0	79	5	5.95238
KLHL17	0	genome.wustl.edu	37	1	897043	897043	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	897043	897043	G	A	SNP	KLHL17	ENST00000338591	human	ensembl	74_37	+1	known	silent	c.402	p.T134	0.162	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL17	HGNC	ENSG00000187961				16	0	0	11	5	31.25
CA6	0	genome.wustl.edu	37	1	9005999	9005999	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	9005999	9005999	G	A	SNP	CA6	ENST00000377443	human	ensembl	74_37	+1	known	silent	c.54	p.Q18	0.110	NULL	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA6	HGNC	ENSG00000131686				54	0	0	37	6	13.9535
LRRC8D	0	genome.wustl.edu	37	1	90398905	90398905	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	90398905	90398905	G	A	SNP	LRRC8D	ENST00000337338	human	ensembl	74_37	+1	known	missense	c.278	p.R93Q	0.000	NULL	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8D	HGNC	ENSG00000171492				58	0	0	38	15	28.3019
LRRC8D	0	genome.wustl.edu	37	1	90400837	90400837	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	90400837	90400837	G	A	SNP	LRRC8D	ENST00000337338	human	ensembl	74_37	+1	known	missense	c.2210	p.S737N	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8D	HGNC	ENSG00000171492				99	0	0	78	17	17.8947
SLC2A7	0	genome.wustl.edu	37	1	9063462	9063462	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	9063462	9063462	C	T	SNP	SLC2A7	ENST00000400906	human	ensembl	74_37	-1	known	missense	c.1436	p.R479H	0.123	pfam_Sub_transporter	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,prints_Sugar/inositol_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A7	HGNC	ENSG00000197241				84	0	0	46	10	17.8571
SLC2A5	0	genome.wustl.edu	37	1	9097693	9097693	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	9097693	9097693	C	T	SNP	SLC2A5	ENST00000377424	human	ensembl	74_37	-1	known	silent	c.1458	p.P486	0.000	prints_Fru_transpt_5	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt,prints_Fru_transpt_5,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A5	HGNC	ENSG00000142583				153	0	0	87	12	12.1212
HFM1	0	genome.wustl.edu	37	1	91818691	91818691	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	91818691	91818691	G	T	SNP	HFM1	ENST00000370425	human	ensembl	74_37	-1	known	missense	c.1748	p.A583D	0.996	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	HFM1	HGNC	ENSG00000162669				84	0	0	52	16	23.5294
HFM1	0	genome.wustl.edu	37	1	91844024	91844024	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	91844024	91844024	C	T	SNP	HFM1	ENST00000370425	human	ensembl	74_37	-1	known	missense	c.1172	p.S391N	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	HFM1	HGNC	ENSG00000162669				95	0	0	91	7	7.14286
CDC7	0	genome.wustl.edu	37	1	91977470	91977470	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	91977470	91977470	C	T	SNP	CDC7	ENST00000234626	human	ensembl	74_37	+1	known	missense	c.562	p.R188C	0.003	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDC7	HGNC	ENSG00000097046				53	0	0	17	8	32
KIAA1107	0	genome.wustl.edu	37	1	92643912	92643912	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	92643912	92643912	C	T	SNP	KIAA1107	ENST00000409154	human	ensembl	74_37	+1	known	missense	c.1336	p.P446S	0.565	NULL	NULL	-	no_errors	KIAA1107	HGNC	ENSG00000069712				12	0	0	5	3	37.5
H6PD	0	genome.wustl.edu	37	1	9324910	9324910	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	9324910	9324910	C	T	SNP	H6PD	ENST00000377403	human	ensembl	74_37	+1	known	silent	c.2358	p.Y786	0.022	tigrfam_6-phosphogluconolactonase_DevB	pfam_G6P_DH_C,pfam_G6P_DH_NAD-bd,prints_G6P_DH,tigrfam_6-phosphogluconolactonase_DevB	-	no_errors	H6PD	HGNC	ENSG00000049239				36	0	0	18	5	21.7391
FAM69A	0	genome.wustl.edu	37	1	93309348	93309348	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	93309348	93309348	G	A	SNP	FAM69A	ENST00000370310	human	ensembl	74_37	-1	known	silent	c.879	p.C293	0.995	pfam_FAM69_kinase_dom	pfam_FAM69_kinase_dom	-	no_errors	FAM69A	HGNC	ENSG00000154511				10	0	0	8	5	38.4615
MTF2	0	genome.wustl.edu	37	1	93584943	93584943	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	93584943	93584943	G	A	SNP	MTF2	ENST00000370298	human	ensembl	74_37	+1	known	missense	c.782	p.R261H	1.000	superfamily_Znf_FYVE_PHD	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Tudor,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	MTF2	HGNC	ENSG00000143033				51	0	0	34	12	26.087
FNBP1L	0	genome.wustl.edu	37	1	94001888	94001888	+	Splice_Site	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	94001888	94001888	G	A	SNP	FNBP1L	ENST00000271234	human	ensembl	74_37	+1	known	splice_site	c.991-1	e10-1	1.000	-	-	-	no_errors	FNBP1L	HGNC	ENSG00000137942				12	0	0	8	3	27.2727
BCAR3	0	genome.wustl.edu	37	1	94140374	94140374	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	94140374	94140374	C	T	SNP	BCAR3	ENST00000260502	human	ensembl	74_37	-1	known	missense	c.113	p.R38H	0.001	NULL	pfam_SH2,pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_SH2,smart_RasGRF_CDC25,pfscan_SH2,pfscan_RasGRF_CDC25	-	no_errors	BCAR3	HGNC	ENSG00000137936				41	0	0	41	4	8.88889
GCLM	0	genome.wustl.edu	37	1	94360188	94360188	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	94360188	94360188	T	C	SNP	GCLM	ENST00000370238	human	ensembl	74_37	-1	known	missense	c.637	p.T213A	1.000	superfamily_NADP_OxRdtase_dom	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom	-	no_errors	GCLM	HGNC	ENSG00000023909				105	0	0	68	28	29.1667
LPPR5	0	genome.wustl.edu	37	1	99380468	99380468	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	99380468	99380468	G	A	SNP	LPPR5	ENST00000263177	human	ensembl	74_37	-1	known	silent	c.807	p.C269	0.998	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	LPPR5	Uniprot_gn	ENSG00000117598				170	0	0	153	11	6.70732
LOXL4	0	genome.wustl.edu	37	10	100021879	100021879	+	Silent	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	100021879	100021879	A	G	SNP	LOXL4	ENST00000260702	human	ensembl	74_37	-1	known	silent	c.369	p.S123	0.812	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_Lysyl_oxidase,pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_Lysyl_oxidase,prints_SRCR	-	no_errors	LOXL4	HGNC	ENSG00000138131				42	0	0	19	10	34.4828
PYROXD2	0	genome.wustl.edu	37	10	100155209	100155209	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	100155209	100155209	C	T	SNP	PYROXD2	ENST00000370575	human	ensembl	74_37	-1	known	missense	c.626	p.G209D	1.000	NULL	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Amino_oxidase	-	no_errors	PYROXD2	HGNC	ENSG00000119943				81	0	0	45	18	28.5714
GOT1	0	genome.wustl.edu	37	10	101157412	101157412	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	101157412	101157412	C	T	SNP	GOT1	ENST00000370508	human	ensembl	74_37	-1	known	silent	c.1134	p.K378	0.999	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase,prints_Asp_trans	-	no_errors	GOT1	HGNC	ENSG00000120053				91	0	0	58	21	26.5823
ABCC2	0	genome.wustl.edu	37	10	101560202	101560202	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	101560202	101560202	C	T	SNP	ABCC2	ENST00000370449	human	ensembl	74_37	+1	known	missense	c.1091	p.A364V	0.959	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC2	HGNC	ENSG00000023839				316	0	0	244	13	5.05837
DNMBP	0	genome.wustl.edu	37	10	101639731	101639731	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	101639731	101639731	G	A	SNP	DNMBP	ENST00000342239	human	ensembl	74_37	-1	known	missense	c.4457	p.T1486M	0.000	NULL	pfam_BAR_dom,pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_BAR_dom,pfscan_BAR_dom,pfscan_SH3_domain,pfscan_DH-domain,prints_p67phox,prints_Spectrin_alpha_SH3	-	no_errors	DNMBP	HGNC	ENSG00000107554				97	0	0	65	7	9.72222
PKD2L1	0	genome.wustl.edu	37	10	102054822	102054822	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	102054822	102054822	C	T	SNP	PKD2L1	ENST00000318222	human	ensembl	74_37	-1	known	missense	c.1415	p.R472H	1.000	pfam_PKD1_2_channel,pfam_Ion_trans_dom	pfam_PKD1_2_channel,pfam_Ion_trans_dom,prints_PKD_2,prints_PKD_1	-	no_errors	PKD2L1	HGNC	ENSG00000107593				91	0	0	64	22	25.5814
BTRC	0	genome.wustl.edu	37	10	103294488	103294488	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	103294488	103294488	C	T	SNP	BTRC	ENST00000370187	human	ensembl	74_37	+1	known	missense	c.1168	p.R390C	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Beta-TrCP_D,pfam_F-box_dom,superfamily_WD40_repeat_dom,superfamily_F-box_dom,smart_F-box_dom,smart_WD40_repeat,pfscan_F-box_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	BTRC	HGNC	ENSG00000166167				175	0	0	111	41	26.9737
PPRC1	0	genome.wustl.edu	37	10	103899333	103899333	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	103899333	103899333	C	T	SNP	PPRC1	ENST00000278070	human	ensembl	74_37	+1	known	silent	c.1068	p.G356	0.540	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PPRC1	HGNC	ENSG00000148840				113	1	0.877193	92	6	6.12245
GBF1	0	genome.wustl.edu	37	10	104119942	104119942	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	104119942	104119942	C	T	SNP	GBF1	ENST00000369983	human	ensembl	74_37	+1	known	silent	c.1179	p.G393	0.922	superfamily_ARM-type_fold	pfam_Sec7_dom,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	-	no_errors	GBF1	HGNC	ENSG00000107862				340	0	0	247	86	25.8258
GTPBP4	0	genome.wustl.edu	37	10	1043150	1043150	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	1043150	1043150	C	T	SNP	GTPBP4	ENST00000360803	human	ensembl	74_37	+1	known	missense	c.463	p.R155C	1.000	superfamily_P-loop_NTPase	pfam_NOG1_Rossman_fold_dom,pfam_NOG_C,pfam_GTP_binding_domain,pfam_Fe2_transport_prot_B_N,pfam_MIRO-like,superfamily_P-loop_NTPase,prints_GTP_binding_domain,tigrfam_Small_GTP-bd_dom	-	no_errors	GTPBP4	HGNC	ENSG00000107937				224	0	0	173	61	26.0684
CNNM2	0	genome.wustl.edu	37	10	104679242	104679242	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	104679242	104679242	C	T	SNP	CNNM2	ENST00000369878	human	ensembl	74_37	+1	known	silent	c.1005	p.D335	1.000	pfam_DUF21	pfam_DUF21,superfamily_cNMP-bd-like	-	no_errors	CNNM2	HGNC	ENSG00000148842				54	0	0	28	8	22.2222
TAF5	0	genome.wustl.edu	37	10	105147784	105147784	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	105147784	105147784	G	A	SNP	TAF5	ENST00000369839	human	ensembl	74_37	+1	known	missense	c.2207	p.R736Q	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	pfam_WD40_repeat,pfam_TFIID-su_WD40-assoc_reg,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_LisH_dimerisation,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	TAF5	HGNC	ENSG00000148835				126	0	0	100	7	6.54206
CALHM2	0	genome.wustl.edu	37	10	105209370	105209370	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	105209370	105209370	G	A	SNP	CALHM2	ENST00000260743	human	ensembl	74_37	-1	known	missense	c.329	p.A110V	0.887	NULL	NULL	-	no_errors	CALHM2	HGNC	ENSG00000138172				51	0	0	35	8	18.6047
NEURL	0	genome.wustl.edu	37	10	105331403	105331403	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	105331403	105331403	C	T	SNP	NEURL	ENST00000369780	human	ensembl	74_37	+1	known	missense	c.473	p.P158L	1.000	smart_Neu_Z,pfscan_Neu_Z	pfam_Neu_Z,smart_Neu_Z,pfscan_Neu_Z,pfscan_Znf_RING	-	no_errors	NEURL	HGNC	ENSG00000107954				26	0	0	7	4	36.3636
ENSG00000260461	0	genome.wustl.edu	37	10	105639235	105639235	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	105639235	105639235	G	A	SNP	ENSG00000260461	ENST00000568017	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-541N10.3	Clone_based_vega_gene	ENSG00000260461				12	0	0	4	3	42.8571
WDR96	0	genome.wustl.edu	37	10	105967430	105967430	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	105967430	105967430	C	T	SNP	WDR96	ENST00000357060	human	ensembl	74_37	-1	known	silent	c.888	p.S296	0.000	superfamily_WD40_repeat_dom,superfamily_Quino_amine_DH_bsu	superfamily_WD40_repeat_dom,superfamily_Quino_amine_DH_bsu	-	no_errors	WDR96	HGNC	ENSG00000197748				87	0	0	74	8	9.7561
CCDC147	0	genome.wustl.edu	37	10	106130764	106130764	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	106130764	106130764	G	A	SNP	CCDC147	ENST00000369704	human	ensembl	74_37	+1	known	missense	c.1042	p.E348K	0.998	NULL	superfamily_Homeodomain-like	-	no_errors	CCDC147	HGNC	ENSG00000120051				133	0	0	81	31	27.6786
SORCS3	0	genome.wustl.edu	37	10	106960891	106960891	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	106960891	106960891	T	C	SNP	SORCS3	ENST00000369701	human	ensembl	74_37	+1	known	missense	c.2141	p.V714A	1.000	smart_VPS10	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS3	HGNC	ENSG00000156395				56	0	0	50	5	9.09091
ACSL5	0	genome.wustl.edu	37	10	114173039	114173039	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	114173039	114173039	C	T	SNP	ACSL5	ENST00000356116	human	ensembl	74_37	+1	known	nonsense	c.1225	p.R409*	0.993	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSL5	HGNC	ENSG00000197142				135	0	0	115	12	9.44882
HABP2	0	genome.wustl.edu	37	10	115334090	115334090	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	115334090	115334090	A	C	SNP	HABP2	ENST00000351270	human	ensembl	74_37	+1	known	missense	c.149	p.N50T	0.000	NULL	pfam_Peptidase_S1,pfam_Kringle,pfam_EG-like_dom,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Kringle,smart_Peptidase_S1,pfscan_EG-like_dom,pfscan_Kringle,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	HABP2	HGNC	ENSG00000148702				161	0	0	91	23	20.1754
VWA2	0	genome.wustl.edu	37	10	116045881	116045881	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	116045881	116045881	C	T	SNP	VWA2	ENST00000392982	human	ensembl	74_37	+1	known	missense	c.1181	p.A394V	0.218	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_EG-like_dom,pfam_EGF_extracell,smart_VWF_A,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_VWF_A	-	no_errors	VWA2	HGNC	ENSG00000165816				48	0	0	31	11	26.1905
ATRNL1	0	genome.wustl.edu	37	10	117075167	117075167	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	117075167	117075167	G	A	SNP	ATRNL1	ENST00000355044	human	ensembl	74_37	+1	known	missense	c.2958	p.M986I	0.368	pfam_Plexin_repeat,smart_Plexin-like_fold	pfam_Kelch_1,pfam_Kelch_2,pfam_Plexin_repeat,pfam_CUB_dom,pfam_EGF_extracell,superfamily_C-type_lectin_fold,superfamily_CUB_dom,superfamily_Plexin-like_fold,smart_EG-like_dom,smart_CUB_dom,smart_Plexin-like_fold,smart_C-type_lectin,smart_EGF_laminin,pfscan_CUB_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_C-type_lectin	-	no_errors	ATRNL1	HGNC	ENSG00000107518				146	0	0	106	26	19.697
PNLIPRP3	0	genome.wustl.edu	37	10	118215275	118215275	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	118215275	118215275	C	T	SNP	PNLIPRP3	ENST00000369230	human	ensembl	74_37	+1	known	silent	c.498	p.G166	1.000	pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase	pfam_Lipase_N,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase,prints_Lipase_panc	-	no_errors	PNLIPRP3	HGNC	ENSG00000203837				42	0	0	32	11	25.5814
PNLIPRP3	0	genome.wustl.edu	37	10	118228829	118228829	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	118228829	118228829	C	T	SNP	PNLIPRP3	ENST00000369230	human	ensembl	74_37	+1	known	missense	c.1060	p.R354C	0.972	superfamily_Lipase_LipOase,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase	pfam_Lipase_N,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase,prints_Lipase_panc	-	no_errors	PNLIPRP3	HGNC	ENSG00000203837				49	0	0	26	3	10.3448
ENO4	0	genome.wustl.edu	37	10	118639453	118639453	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	118639453	118639453	G	A	SNP	ENO4	ENST00000341276	human	ensembl	74_37	+1	known	missense	c.1688	p.R563H	1.000	pfam_Enolase_C	pfam_Enolase_C,pfam_Enolase_N	-	no_errors	ENO4	HGNC	ENSG00000188316				12	0	0	12	5	29.4118
EIF3A	0	genome.wustl.edu	37	10	120809334	120809334	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	120809334	120809334	G	A	SNP	EIF3A	ENST00000369144	human	ensembl	74_37	-1	known	silent	c.2637	p.G879	0.950	NULL	pfam_PCI_dom,smart_PCI_dom	-	no_errors	EIF3A	HGNC	ENSG00000107581				215	0	0	181	10	5.2356
RGS10	0	genome.wustl.edu	37	10	121275054	121275054	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	121275054	121275054	C	T	SNP	RGS10	ENST00000369103	human	ensembl	74_37	-1	known	silent	c.366	p.P122	0.212	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS10	HGNC	ENSG00000148908				38	0	0	20	15	42.8571
RGS10	0	genome.wustl.edu	37	10	121286870	121286870	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	121286870	121286870	G	A	SNP	RGS10	ENST00000369103	human	ensembl	74_37	-1	known	missense	c.116	p.A39V	0.991	superfamily_Regulat_G_prot_signal_superfam,prints_RGS_dom	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS10	HGNC	ENSG00000148908				49	0	0	36	12	25
DHTKD1	0	genome.wustl.edu	37	10	12136162	12136162	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	12136162	12136162	G	A	SNP	DHTKD1	ENST00000263035	human	ensembl	74_37	+1	known	missense	c.1250	p.R417H	1.000	pfam_DH_E1,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	pfam_Transketolase-like_Pyr-bd,pfam_DH_E1,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	-	no_errors	DHTKD1	HGNC	ENSG00000181192				67	0	0	54	15	21.7391
MCMBP	0	genome.wustl.edu	37	10	121591566	121591566	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	121591566	121591566	C	T	SNP	MCMBP	ENST00000360003	human	ensembl	74_37	-1	known	missense	c.1760	p.S587N	1.000	pfam_MCM_complex-bd	pfam_MCM_complex-bd	-	no_errors	MCMBP	HGNC	ENSG00000197771				99	0	0	86	7	7.52688
SEC23IP	0	genome.wustl.edu	37	10	121658326	121658326	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	121658326	121658326	G	A	SNP	SEC23IP	ENST00000369075	human	ensembl	74_37	+1	known	missense	c.551	p.R184H	1.000	NULL	pfam_DDHD,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_DDHD	-	no_errors	SEC23IP	HGNC	ENSG00000107651				80	0	0	58	14	19.4444
CDC123	0	genome.wustl.edu	37	10	12292370	12292370	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	12292370	12292370	G	A	SNP	CDC123	ENST00000498747	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CDC123	HGNC	ENSG00000151465				30	0	0	14	12	46.1538
TACC2	0	genome.wustl.edu	37	10	123846012	123846012	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	123846012	123846012	C	T	SNP	TACC2	ENST00000334433	human	ensembl	74_37	+1	known	missense	c.3997	p.P1333S	0.134	NULL	pfam_TACC	-	no_errors	TACC2	HGNC	ENSG00000138162				37	0	0	37	5	11.9048
HTRA1	0	genome.wustl.edu	37	10	124268280	124268280	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	124268280	124268280	G	A	SNP	HTRA1	ENST00000368984	human	ensembl	74_37	+1	known	missense	c.1114	p.A372T	1.000	pfscan_PDZ	pfam_Peptidase_S1,pfam_PDZ,pfam_Kazal_dom,pfam_IGFBP-like,superfamily_Trypsin-like_Pept_dom,superfamily_PDZ,smart_IGFBP-like,smart_Kazal_dom,smart_PDZ,pfscan_PDZ,prints_Peptidase_S1C	-	no_errors	HTRA1	HGNC	ENSG00000166033				85	0	0	70	22	23.913
IKZF5	0	genome.wustl.edu	37	10	124757923	124757923	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	124757923	124757923	C	T	SNP	IKZF5	ENST00000479103	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	IKZF5	HGNC	ENSG00000095574				23	0	0	15	7	31.8182
ACADSB	0	genome.wustl.edu	37	10	124800157	124800157	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	124800157	124800157	C	T	SNP	ACADSB	ENST00000358776	human	ensembl	74_37	+1	known	missense	c.479	p.A160V	1.000	pfam_AcylCoA_DH/ox_N,superfamily_AcylCoA_DH/oxidase_NM_dom	pfam_AcylCo_DH/oxidase_C,pfam_AcylCoA_DH/ox_N,pfam_Acyl-CoA_DH_2_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,superfamily_AcylCoA_DH/oxidase_NM_dom,superfamily_AcylCo_DH/oxidase_C	-	no_errors	ACADSB	HGNC	ENSG00000196177				97	0	0	92	7	7.07071
CPXM2	0	genome.wustl.edu	37	10	125528124	125528124	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	125528124	125528124	C	T	SNP	CPXM2	ENST00000241305	human	ensembl	74_37	-1	known	missense	c.1217	p.R406H	1.000	pfam_Peptidase_M14	pfam_Peptidase_M14,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_CarboxyPept-like_regulatory,smart_Coagulation_fac_5/8-C_type_dom,smart_Peptidase_M14,pfscan_Coagulation_fac_5/8-C_type_dom,prints_Peptidase_M14	-	no_errors	CPXM2	HGNC	ENSG00000121898				63	0	0	45	13	22.4138
CHST15	0	genome.wustl.edu	37	10	125780848	125780848	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	125780848	125780848	T	C	SNP	CHST15	ENST00000346248	human	ensembl	74_37	-1	known	missense	c.1271	p.Q424R	1.000	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	CHST15	HGNC	ENSG00000182022				41	0	0	16	12	42.8571
ZRANB1	0	genome.wustl.edu	37	10	126631374	126631374	+	Silent	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	126631374	126631374	T	C	SNP	ZRANB1	ENST00000359653	human	ensembl	74_37	+1	known	silent	c.312	p.C104	0.976	smart_Znf_RanBP2,pfscan_Znf_RanBP2	pfam_OTU,pfam_Znf_RanBP2,smart_Znf_RanBP2,pfscan_OTU,pfscan_Znf_RanBP2	-	no_errors	ZRANB1	HGNC	ENSG00000019995				120	0	0	99	14	12.3894
ZRANB1	0	genome.wustl.edu	37	10	126671767	126671767	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	126671767	126671767	G	A	SNP	ZRANB1	ENST00000359653	human	ensembl	74_37	+1	known	silent	c.1572	p.T524	0.940	pfam_OTU,pfscan_OTU	pfam_OTU,pfam_Znf_RanBP2,smart_Znf_RanBP2,pfscan_OTU,pfscan_Znf_RanBP2	-	no_errors	ZRANB1	HGNC	ENSG00000019995				111	0	0	82	8	8.88889
CTBP2	0	genome.wustl.edu	37	10	126691653	126691653	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	126691653	126691653	G	A	SNP	CTBP2	ENST00000309035	human	ensembl	74_37	-1	known	silent	c.1854	p.G618	0.118	pfam_D-isomer_2_OHA_DH_cat_dom	pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_D-isomer_2_OHA_DH_cat_dom	-	no_errors	CTBP2	HGNC	ENSG00000175029				41	0	0	40	5	11.1111
CTBP2	0	genome.wustl.edu	37	10	126715433	126715433	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	126715433	126715433	G	A	SNP	CTBP2	ENST00000309035	human	ensembl	74_37	-1	known	missense	c.896	p.A299V	0.959	NULL	pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_D-isomer_2_OHA_DH_cat_dom	-	no_errors	CTBP2	HGNC	ENSG00000175029				31	0	0	20	9	31.0345
C10orf137	0	genome.wustl.edu	37	10	127414270	127414270	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	127414270	127414270	G	A	SNP	C10orf137	ENST00000356792	human	ensembl	74_37	+1	known	missense	c.655	p.A219T	0.999	NULL	NULL	-	no_errors	C10orf137	HGNC	ENSG00000107938				48	0	0	34	9	20.9302
C10orf137	0	genome.wustl.edu	37	10	127424342	127424342	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	127424342	127424342	C	T	SNP	C10orf137	ENST00000356792	human	ensembl	74_37	+1	known	missense	c.1627	p.P543S	0.990	NULL	NULL	-	no_errors	C10orf137	HGNC	ENSG00000107938				90	0	0	52	15	22.3881
DHX32	0	genome.wustl.edu	37	10	127540971	127540971	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	127540971	127540971	C	T	SNP	DHX32	ENST00000284690	human	ensembl	74_37	-1	known	silent	c.1242	p.T414	0.998	superfamily_P-loop_NTPase	pfam_Helicase-assoc_dom,pfam_DUF1605,superfamily_P-loop_NTPase,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd	-	no_errors	DHX32	HGNC	ENSG00000089876				119	0	0	84	14	14.2857
CAMK1D	0	genome.wustl.edu	37	10	12833171	12833171	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	12833171	12833171	G	A	SNP	CAMK1D	ENST00000378847	human	ensembl	74_37	+1	known	missense	c.580	p.A194T	0.999	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CAMK1D	HGNC	ENSG00000183049				116	1	0.854701	69	17	19.7674
DOCK1	0	genome.wustl.edu	37	10	128823028	128823028	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	128823028	128823028	G	A	SNP	DOCK1	ENST00000280333	human	ensembl	74_37	+1	known	missense	c.1469	p.R490H	1.000	NULL	pfam_DOCK_C,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,superfamily_Cyt_c-like_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK1	HGNC	ENSG00000150760				24	0	0	7	4	36.3636
FAM196A	0	genome.wustl.edu	37	10	128973888	128973888	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	128973888	128973888	C	T	SNP	FAM196A	ENST00000522781	human	ensembl	74_37	-1	known	missense	c.772	p.A258T	0.000	NULL	NULL	-	no_errors	FAM196A	HGNC	ENSG00000188916				21	0	0	12	4	25
MKI67	0	genome.wustl.edu	37	10	129905990	129905990	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	129905990	129905990	G	A	SNP	MKI67	ENST00000368654	human	ensembl	74_37	-1	known	missense	c.4114	p.P1372S	0.000	pfam_K167R	pfam_K167R,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MKI67	HGNC	ENSG00000148773				83	0	0	72	5	6.49351
GLRX3	0	genome.wustl.edu	37	10	131973264	131973264	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	131973264	131973264	C	T	SNP	GLRX3	ENST00000331244	human	ensembl	74_37	+1	known	missense	c.868	p.R290W	1.000	pfam_Glutaredoxin,superfamily_Thioredoxin-like_fold,tigrfam_Monothiol_GRX-rel	pfam_Glutaredoxin,pfam_Thioredoxin_domain,pfam_mRNA_splic_U5,pfam_Phosducin_thioredoxin-like_dom,superfamily_Thioredoxin-like_fold,tigrfam_Monothiol_GRX-rel	-	no_errors	GLRX3	HGNC	ENSG00000108010				81	0	0	42	22	34.375
MCM10	0	genome.wustl.edu	37	10	13213246	13213246	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	13213246	13213246	C	T	SNP	MCM10	ENST00000484800	human	ensembl	74_37	+1	known	missense	c.332	p.T111M	0.468	NULL	pfam_Rep_factor_Mcm10,pfam_Znf_Mcm10/DnaG	-	no_errors	MCM10	HGNC	ENSG00000065328				50	0	0	39	4	9.30233
TCERG1L	0	genome.wustl.edu	37	10	132944908	132944908	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	132944908	132944908	C	T	SNP	TCERG1L	ENST00000368642	human	ensembl	74_37	-1	known	silent	c.1050	p.T350	0.810	pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	pfam_FF_domain,pfam_WW_dom,superfamily_FF_domain,superfamily_WW_dom,smart_WW_dom,smart_FF_domain,pfscan_WW_dom	-	no_errors	TCERG1L	HGNC	ENSG00000176769				98	0	0	60	29	32.5843
BNIP3	0	genome.wustl.edu	37	10	133784260	133784260	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	133784260	133784260	C	T	SNP	BNIP3	ENST00000368636	human	ensembl	74_37	-1	known	missense	c.421	p.A141T	0.064	pfam_BNIP3	pfam_BNIP3	-	no_errors	BNIP3	HGNC	ENSG00000176171				58	0	0	42	4	8.69565
JAKMIP3	0	genome.wustl.edu	37	10	133930823	133930823	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	133930823	133930823	C	T	SNP	JAKMIP3	ENST00000298622	human	ensembl	74_37	+1	known	silent	c.378	p.G126	0.021	NULL	NULL	-	no_errors	JAKMIP3	HGNC	ENSG00000188385				62	0	0	32	13	28.8889
JAKMIP3	0	genome.wustl.edu	37	10	133954021	133954021	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	133954021	133954021	G	A	SNP	JAKMIP3	ENST00000298622	human	ensembl	74_37	+1	known	missense	c.1411	p.V471I	0.970	NULL	NULL	-	no_errors	JAKMIP3	HGNC	ENSG00000188385				36	0	0	4	8	66.6667
LRRC27	0	genome.wustl.edu	37	10	134165170	134165170	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	134165170	134165170	C	T	SNP	LRRC27	ENST00000392638	human	ensembl	74_37	+1	known	nonsense	c.1081	p.R361*	0.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC27	HGNC	ENSG00000148814				199	0	0	153	16	9.46746
INPP5A	0	genome.wustl.edu	37	10	134463965	134463965	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	134463965	134463965	C	T	SNP	INPP5A	ENST00000368594	human	ensembl	74_37	+1	known	nonsense	c.262	p.R88*	0.998	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	-	no_errors	INPP5A	HGNC	ENSG00000068383				319	1	0.3125	249	20	7.43494
KNDC1	0	genome.wustl.edu	37	10	135010567	135010567	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	135010567	135010567	C	T	SNP	KNDC1	ENST00000368572	human	ensembl	74_37	+1	known	silent	c.1740	p.C580	0.000	superfamily_Kinase-like_dom,smart_KIND	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,superfamily_Kinase-like_dom,smart_KIND,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	KNDC1	HGNC	ENSG00000171798				35	0	0	22	10	31.25
KNDC1	0	genome.wustl.edu	37	10	135038246	135038246	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	135038246	135038246	A	G	SNP	KNDC1	ENST00000368572	human	ensembl	74_37	+1	known	missense	c.5108	p.Y1703C	0.965	superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,superfamily_Kinase-like_dom,smart_KIND,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	KNDC1	HGNC	ENSG00000171798				40	0	0	23	6	20.6897
FRG2B	0	genome.wustl.edu	37	10	135439043	135439043	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	135439043	135439043	G	A	SNP	FRG2B	ENST00000425520	human	ensembl	74_37	-1	known	missense	c.397	p.H133Y	0.143	NULL	NULL	-	no_errors	FRG2B	HGNC	ENSG00000225899				121	0	0	54	26	32.5
FAM188A	0	genome.wustl.edu	37	10	15838155	15838155	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	15838155	15838155	G	A	SNP	FAM188A	ENST00000277632	human	ensembl	74_37	-1	known	missense	c.899	p.A300V	1.000	NULL	NULL	-	no_errors	FAM188A	HGNC	ENSG00000148481				154	1	0.645161	133	7	5
CUBN	0	genome.wustl.edu	37	10	16970170	16970170	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	16970170	16970170	G	A	SNP	CUBN	ENST00000377833	human	ensembl	74_37	-1	known	missense	c.6257	p.A2086V	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611				75	0	0	69	16	18.8235
VIM	0	genome.wustl.edu	37	10	17272805	17272805	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	17272805	17272805	C	T	SNP	VIM	ENST00000485947	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	VIM	HGNC	ENSG00000026025				33	0	0	13	6	31.5789
VIM	0	genome.wustl.edu	37	10	17277251	17277251	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	17277251	17277251	C	T	SNP	VIM	ENST00000224237	human	ensembl	74_37	+1	known	silent	c.1092	p.R364	0.991	pfam_IF	pfam_IF,pfam_Intermed_filament_DNA-bd,superfamily_Prefoldin	-	no_errors	VIM	HGNC	ENSG00000026025				127	0	0	101	8	7.33945
CACNB2	0	genome.wustl.edu	37	10	18803962	18803962	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	18803962	18803962	C	T	SNP	CACNB2	ENST00000352115	human	ensembl	74_37	+1	known	missense	c.724	p.R242W	1.000	superfamily_SH3_domain	pfam_GK/Ca_channel_bsu,pfam_VDCC_L_bsu,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_SH3_domain,prints_VDCC_L_bsu,prints_VDCC_L_b2su	-	no_errors	CACNB2	HGNC	ENSG00000165995				60	0	0	42	5	10.6383
CACNB2	0	genome.wustl.edu	37	10	18816561	18816561	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	18816561	18816561	G	A	SNP	CACNB2	ENST00000324631	human	ensembl	74_37	+1	known	missense	c.989	p.R330H	1.000	pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,smart_GK/Ca_channel_bsu,prints_VDCC_L_bsu	pfam_GK/Ca_channel_bsu,pfam_VDCC_L_bsu,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_SH3_domain,prints_VDCC_L_bsu,prints_VDCC_L_b2su	-	no_errors	CACNB2	HGNC	ENSG00000165995				142	0	0	95	38	28.5714
ARL5B	0	genome.wustl.edu	37	10	18957477	18957477	+	Silent	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	18957477	18957477	T	C	SNP	ARL5B	ENST00000377275	human	ensembl	74_37	+1	known	silent	c.126	p.V42	1.000	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,pfam_MIRO-like,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,pfam_MIRO-like,pfam_Gtr1_RagA,pfam_Gprotein_alpha_su,superfamily_P-loop_NTPase,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,prints_Small_GTPase_ARF/SAR,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	ARL5B	HGNC	ENSG00000165997				63	0	0	42	11	20.7547
CASC10	0	genome.wustl.edu	37	10	21785730	21785730	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	21785730	21785730	T	A	SNP	CASC10	ENST00000377113	human	ensembl	74_37	-1	known	missense	c.14	p.E5V	0.305	NULL	NULL	-	no_errors	CASC10	HGNC	ENSG00000204682				11	0	0	10	4	28.5714
COMMD3	0	genome.wustl.edu	37	10	22606821	22606821	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	22606821	22606821	G	T	SNP	COMMD3	ENST00000376836	human	ensembl	74_37	+1	known	missense	c.148	p.D50Y	1.000	pfam_HCaRG	pfam_HCaRG	-	no_errors	COMMD3	HGNC	ENSG00000148444				117	0	0	81	21	20.5882
PIP4K2A	0	genome.wustl.edu	37	10	22898568	22898568	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	22898568	22898568	C	T	SNP	PIP4K2A	ENST00000376573	human	ensembl	74_37	-1	known	missense	c.223	p.D75N	1.000	smart_PInositol-4P-5-kinase_core_sub	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP4K2A	HGNC	ENSG00000150867				86	0	0	51	20	28.169
KIAA1217	0	genome.wustl.edu	37	10	24669946	24669946	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	24669946	24669946	C	T	SNP	KIAA1217	ENST00000376454	human	ensembl	74_37	+1	known	missense	c.503	p.A168V	0.999	NULL	pfam_AIP3_C	-	no_errors	KIAA1217	HGNC	ENSG00000120549				59	0	0	33	12	26.6667
KIAA1217	0	genome.wustl.edu	37	10	24816953	24816953	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	24816953	24816953	C	T	SNP	KIAA1217	ENST00000376454	human	ensembl	74_37	+1	known	missense	c.2987	p.A996V	1.000	NULL	pfam_AIP3_C	-	no_errors	KIAA1217	HGNC	ENSG00000120549				180	0	0	91	40	30.5344
GPR158	0	genome.wustl.edu	37	10	25887280	25887280	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	25887280	25887280	G	A	SNP	GPR158	ENST00000376351	human	ensembl	74_37	+1	known	missense	c.2725	p.A909T	1.000	NULL	pfam_GPCR_3_C,pfscan_GPCR_3_C	-	no_errors	GPR158	HGNC	ENSG00000151025				273	0	0	240	16	6.25
GPR158	0	genome.wustl.edu	37	10	25888009	25888009	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	25888009	25888009	C	T	SNP	GPR158	ENST00000376351	human	ensembl	74_37	+1	known	missense	c.3454	p.R1152C	0.985	NULL	pfam_GPCR_3_C,pfscan_GPCR_3_C	-	no_errors	GPR158	HGNC	ENSG00000151025				107	0	0	65	15	18.75
ANKRD26	0	genome.wustl.edu	37	10	27301829	27301829	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	27301829	27301829	C	T	SNP	ANKRD26	ENST00000436985	human	ensembl	74_37	-1	known	missense	c.4983	p.M1661I	0.000	NULL	pfam_DUF3496,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Polyketide_synth_docking,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD26	HGNC	ENSG00000107890				118	0	0	95	8	7.76699
PTCHD3	0	genome.wustl.edu	37	10	27702400	27702400	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	27702400	27702400	C	T	SNP	PTCHD3	ENST00000438700	human	ensembl	74_37	-1	known	silent	c.780	p.A260	0.000	pfam_Patched	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD3	HGNC	ENSG00000182077				37	0	0	16	7	30.4348
PTCHD3	0	genome.wustl.edu	37	10	27702950	27702950	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	27702950	27702950	C	T	SNP	PTCHD3	ENST00000438700	human	ensembl	74_37	-1	known	missense	c.230	p.R77Q	0.000	NULL	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD3	HGNC	ENSG00000182077				23	0	0	14	6	30
MPP7	0	genome.wustl.edu	37	10	28358714	28358714	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	28358714	28358714	G	A	SNP	MPP7	ENST00000337532	human	ensembl	74_37	-1	known	silent	c.1191	p.G397	0.159	pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,smart_GK/Ca_channel_bsu,pfscan_Guanylate_kin-like	pfam_GK/Ca_channel_bsu,pfam_L27_C,pfam_PDZ,pfam_SH3_2,pfam_SH3_domain,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like,prints_SH3_domain	-	no_errors	MPP7	HGNC	ENSG00000150054				50	0	0	26	13	33.3333
LYZL1	0	genome.wustl.edu	37	10	29580930	29580930	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	29580930	29580930	G	A	SNP	LYZL1	ENST00000375500	human	ensembl	74_37	+1	known	missense	c.272	p.G91E	1.000	pfam_Glyco_hydro_22,superfamily_Lysozyme-like_dom,smart_Glyco_hydro_22,prints_Glyco_hydro_22	pfam_Glyco_hydro_22,superfamily_Lysozyme-like_dom,smart_Glyco_hydro_22,prints_Glyco_hydro_22,prints_Glyco_hydro_22_lys	-	no_errors	LYZL1	HGNC	ENSG00000120563				101	0	0	71	21	22.8261
MAP3K8	0	genome.wustl.edu	37	10	30748327	30748327	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	30748327	30748327	G	A	SNP	MAP3K8	ENST00000263056	human	ensembl	74_37	+1	known	silent	c.1170	p.P390	0.841	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K8	HGNC	ENSG00000107968				60	0	0	43	13	23.2143
ZNF438	0	genome.wustl.edu	37	10	31137485	31137485	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	31137485	31137485	G	A	SNP	ZNF438	ENST00000361310	human	ensembl	74_37	-1	known	nonsense	c.1849	p.R617*	0.001	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF438	HGNC	ENSG00000183621				77	0	0	70	5	6.66667
PFKP	0	genome.wustl.edu	37	10	3124630	3124630	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	3124630	3124630	G	A	SNP	PFKP	ENST00000381125	human	ensembl	74_37	+1	known	missense	c.163	p.A55T	0.999	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,prints_Phosphofructokinase,tigrfam_6-phosphofructokinase_euk	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,prints_Phosphofructokinase,tigrfam_6-phosphofructokinase_euk	-	no_errors	PFKP	HGNC	ENSG00000067057				60	0	0	49	10	16.9492
PFKP	0	genome.wustl.edu	37	10	3154433	3154433	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	3154433	3154433	C	T	SNP	PFKP	ENST00000381125	human	ensembl	74_37	+1	known	missense	c.1109	p.A370V	1.000	superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,tigrfam_6-phosphofructokinase_euk	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,prints_Phosphofructokinase,tigrfam_6-phosphofructokinase_euk	-	no_errors	PFKP	HGNC	ENSG00000067057				99	0	0	86	6	6.52174
PITRM1	0	genome.wustl.edu	37	10	3189835	3189835	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	3189835	3189835	C	T	SNP	PITRM1	ENST00000380989	human	ensembl	74_37	-1	known	missense	c.2167	p.A723T	1.000	pfam_Peptidase_M16C_assoc,superfamily_Metalloenz_LuxS/M16	pfam_Peptidase_M16C_assoc,pfam_Peptidase_M16_C,pfam_Pept_M16_N,superfamily_Metalloenz_LuxS/M16	-	no_errors	PITRM1	HGNC	ENSG00000107959				84	0	0	67	7	9.45946
NRP1	0	genome.wustl.edu	37	10	33496560	33496560	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	33496560	33496560	C	T	SNP	NRP1	ENST00000265371	human	ensembl	74_37	-1	known	missense	c.1699	p.E567K	1.000	pirsf_Neuropilin,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pirsf_Neuropilin,pfam_CUB_dom,pfam_Coagulation_fac_5/8-C_type_dom,pfam_MAM_dom,pfam_Neuropilin1_C,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_CUB_dom,smart_CUB_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_MAM_dom,prints_MAM_dom,pfscan_CUB_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_MAM_dom	-	no_errors	NRP1	HGNC	ENSG00000099250				180	0	0	127	43	25.2941
PARD3	0	genome.wustl.edu	37	10	34626277	34626277	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	34626277	34626277	C	T	SNP	PARD3	ENST00000374789	human	ensembl	74_37	-1	known	missense	c.2495	p.R832H	1.000	NULL	pfam_DUF3534,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PARD3	HGNC	ENSG00000148498				59	0	0	36	14	28
CUL2	0	genome.wustl.edu	37	10	35317808	35317808	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	35317808	35317808	G	T	SNP	CUL2	ENST00000537177	human	ensembl	74_37	-1	known	missense	c.1604	p.A535E	1.000	pfam_Cullin_N,superfamily_Cullin_homology,smart_Cullin_homology,pfscan_Cullin_homology	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL2	HGNC	ENSG00000108094				40	0	0	20	10	33.3333
HSD17B7P2	0	genome.wustl.edu	37	10	38651206	38651206	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	38651206	38651206	C	T	SNP	HSD17B7P2	ENST00000494540	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HSD17B7P2	HGNC	ENSG00000099251				107	0	0	68	16	19.0476
HSD17B7P2	0	genome.wustl.edu	37	10	38651254	38651254	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	38651254	38651254	G	A	SNP	HSD17B7P2	ENST00000494540	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.985	-	-	-	no_errors	HSD17B7P2	HGNC	ENSG00000099251				98	0	0	50	14	21.875
LOC441666	0	genome.wustl.edu	37	10	42832378	42832378	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	42832378	42832378	C	T	SNP	LOC441666	ENST00000609841	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.994	-	-	-	no_errors	RP11-313J2.1	Clone_based_vega_gene	ENSG00000215146				21	0	0	20	5	20
DIP2C	0	genome.wustl.edu	37	10	430000	430000	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	430000	430000	G	A	SNP	DIP2C	ENST00000280886	human	ensembl	74_37	-1	known	nonsense	c.1843	p.R615*	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2C	HGNC	ENSG00000151240				61	0	0	45	15	25
BMS1	0	genome.wustl.edu	37	10	43326400	43326400	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	43326400	43326400	G	A	SNP	BMS1	ENST00000374518	human	ensembl	74_37	+1	known	silent	c.3705	p.E1235	0.979	NULL	pfam_BMS1_TSR1_C,pfam_AARP2CN,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_AARP2CN	-	no_errors	BMS1	HGNC	ENSG00000165733				30	0	0	22	6	21.4286
RET	0	genome.wustl.edu	37	10	43606686	43606686	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	43606686	43606686	C	T	SNP	RET	ENST00000355710	human	ensembl	74_37	+1	known	missense	c.1295	p.A432V	0.691	pirsf_Tyr_kinase_Ret_rcpt,superfamily_Cadherin-like	pirsf_Tyr_kinase_Ret_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Cadherin,superfamily_Kinase-like_dom,superfamily_Cadherin-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Cadherin	-	no_errors	RET	HGNC	ENSG00000165731				77	0	0	52	29	35.8025
ZNF485	0	genome.wustl.edu	37	10	44111987	44111987	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	44111987	44111987	G	A	SNP	ZNF485	ENST00000361807	human	ensembl	74_37	+1	known	missense	c.496	p.A166T	0.008	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF485	HGNC	ENSG00000198298				139	1	0.714286	87	17	16.3462
C10orf10	0	genome.wustl.edu	37	10	45467036	45467036	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	45467036	45467036	C	T	SNP	C10orf10	ENST00000496638	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	C10orf10	HGNC	ENSG00000165507				12	0	0	10	5	33.3333
RASSF4	0	genome.wustl.edu	37	10	45480314	45480314	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	45480314	45480314	G	A	SNP	RASSF4	ENST00000334940	human	ensembl	74_37	+1	known	missense	c.454	p.A152T	1.000	NULL	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SARAH_dom	-	no_errors	RASSF4	HGNC	ENSG00000107551				73	0	0	45	9	16.6667
RASSF4	0	genome.wustl.edu	37	10	45486467	45486467	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	45486467	45486467	G	A	SNP	RASSF4	ENST00000334940	human	ensembl	74_37	+1	known	missense	c.784	p.A262T	0.998	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SARAH_dom	-	no_errors	RASSF4	HGNC	ENSG00000107551				98	0	0	48	6	11.1111
FAM21C	0	genome.wustl.edu	37	10	46224380	46224380	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	46224380	46224380	A	G	SNP	FAM21C	ENST00000374362	human	ensembl	74_37	+1	known	missense	c.197	p.D66G	1.000	NULL	NULL	-	no_errors	FAM21C	HGNC	ENSG00000172661				201	0	0	171	20	10.4712
GPRIN2	0	genome.wustl.edu	37	10	46999760	46999760	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	46999760	46999760	G	A	SNP	GPRIN2	ENST00000374314	human	ensembl	74_37	+1	known	missense	c.880	p.A294T	0.993	NULL	NULL	-	no_errors	GPRIN2	HGNC	ENSG00000204175				95	0	0	88	10	10.2041
NPY4R	0	genome.wustl.edu	37	10	47086901	47086901	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	47086901	47086901	G	A	SNP	NPY4R	ENST00000374312	human	ensembl	74_37	+1	known	missense	c.118	p.V40M	0.000	prints_NPY4_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_NPY4_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	NPY4R	HGNC	ENSG00000204174				175	1	0.568182	129	17	11.6438
NPY4R	0	genome.wustl.edu	37	10	47087502	47087502	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	47087502	47087502	G	A	SNP	NPY4R	ENST00000374312	human	ensembl	74_37	+1	known	missense	c.719	p.R240H	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_NPY4_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	NPY4R	HGNC	ENSG00000204174				158	0	0	127	9	6.61765
RBP3	0	genome.wustl.edu	37	10	48389508	48389508	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	48389508	48389508	G	A	SNP	RBP3	ENST00000224600	human	ensembl	74_37	-1	known	missense	c.1370	p.A457V	0.199	pfam_Interphotoreceptor_retinol-bd,smart_Interphotoreceptor_retinol-bd	pfam_Interphotoreceptor_retinol-bd,pfam_Interphotorcpt_retinol-bd_N,smart_Interphotoreceptor_retinol-bd	-	no_errors	RBP3	HGNC	ENSG00000107618				43	0	0	20	11	35.4839
GDF2	0	genome.wustl.edu	37	10	48414241	48414241	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	48414241	48414241	G	A	SNP	GDF2	ENST00000249598	human	ensembl	74_37	-1	known	silent	c.627	p.S209	0.105	pfam_TGF-b_N	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_asu	-	no_errors	GDF2	HGNC	ENSG00000128802				71	0	0	32	10	23.8095
ARHGAP22	0	genome.wustl.edu	37	10	49654532	49654532	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	49654532	49654532	C	G	SNP	ARHGAP22	ENST00000417912	human	ensembl	74_37	-1	known	missense	c.2047	p.E683Q	0.999	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP22	HGNC	ENSG00000128805				99	0	0	91	7	7.14286
ERCC6	0	genome.wustl.edu	37	10	50701183	50701183	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	50701183	50701183	C	T	SNP	ERCC6	ENST00000355832	human	ensembl	74_37	-1	known	missense	c.1801	p.G601S	1.000	pfam_SNF2_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6	HGNC	ENSG00000225830				56	0	0	37	14	27.451
PGBD3	0	genome.wustl.edu	37	10	50723521	50723521	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	50723521	50723521	C	T	SNP	PGBD3	ENST00000603152	human	ensembl	74_37	-1	known	missense	c.3044	p.R1015H	0.034	NULL	NULL	-	no_errors	PGBD3	HGNC	ENSG00000243251				138	0	0	90	26	22.4138
SLC18A3	0	genome.wustl.edu	37	10	50819068	50819068	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	50819068	50819068	G	A	SNP	SLC18A3	ENST00000374115	human	ensembl	74_37	+1	known	silent	c.282	p.T94	0.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC18A3	HGNC	ENSG00000187714				31	0	0	17	7	29.1667
SLC18A3	0	genome.wustl.edu	37	10	50819793	50819793	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	50819793	50819793	T	C	SNP	SLC18A3	ENST00000374115	human	ensembl	74_37	+1	known	missense	c.1007	p.V336A	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC18A3	HGNC	ENSG00000187714				52	0	0	29	10	25.641
ENSG00000226200	0	genome.wustl.edu	37	10	52390830	52390830	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	52390830	52390830	G	A	SNP	ENSG00000226200	ENST00000443374	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.993	-	-	-	no_errors	RP11-50E11.3	Clone_based_vega_gene	ENSG00000226200				17	0	0	13	8	38.0952
TUBAL3	0	genome.wustl.edu	37	10	5435974	5435974	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	5435974	5435974	C	T	SNP	TUBAL3	ENST00000380419	human	ensembl	74_37	-1	known	missense	c.847	p.V283I	1.000	pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tub_FtsZ_C,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Beta_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Beta_tubulin	-	no_errors	TUBAL3	HGNC	ENSG00000178462				136	0	0	127	8	5.92593
PCDH15	0	genome.wustl.edu	37	10	55582282	55582282	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	55582282	55582282	G	A	SNP	PCDH15	ENST00000320301	human	ensembl	74_37	-1	known	missense	c.5204	p.A1735V	0.999	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275				65	0	0	39	8	17.0213
FAM208B	0	genome.wustl.edu	37	10	5788414	5788414	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	5788414	5788414	G	A	SNP	FAM208B	ENST00000328090	human	ensembl	74_37	+1	known	silent	c.3030	p.V1010	0.000	NULL	pfam_DUF3715,pfam_DUF3699	-	no_errors	FAM208B	HGNC	ENSG00000108021				55	0	0	52	29	35.8025
ANK3	0	genome.wustl.edu	37	10	61844960	61844960	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	61844960	61844960	G	A	SNP	ANK3	ENST00000280772	human	ensembl	74_37	-1	known	missense	c.3800	p.T1267M	1.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150				49	0	0	43	8	15.6863
ZNF365	0	genome.wustl.edu	37	10	64136647	64136647	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	64136647	64136647	T	C	SNP	ZNF365	ENST00000410046	human	ensembl	74_37	+1	known	missense	c.695	p.L232P	1.000	NULL	NULL	-	no_errors	ZNF365	HGNC	ENSG00000138311				140	0	0	105	10	8.69565
EGR2	0	genome.wustl.edu	37	10	64575694	64575694	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	64575694	64575694	G	A	SNP	EGR2	ENST00000242480	human	ensembl	74_37	-1	known	silent	c.96	p.A32	1.000	NULL	pfam_DUF3446,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	EGR2	HGNC	ENSG00000122877				102	0	0	63	5	7.35294
JMJD1C	0	genome.wustl.edu	37	10	64979728	64979728	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	64979728	64979728	G	A	SNP	JMJD1C	ENST00000399262	human	ensembl	74_37	-1	known	silent	c.463	p.L155	1.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	JMJD1C	HGNC	ENSG00000171988				116	0	0	85	23	21.2963
TET1	0	genome.wustl.edu	37	10	70446141	70446141	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	70446141	70446141	G	A	SNP	TET1	ENST00000373644	human	ensembl	74_37	+1	known	missense	c.5081	p.R1694H	1.000	NULL	pfam_Znf_CXXC,pfscan_Znf_CXXC	-	no_errors	TET1	HGNC	ENSG00000138336				76	0	0	47	11	18.9655
STOX1	0	genome.wustl.edu	37	10	70644170	70644170	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	70644170	70644170	G	A	SNP	STOX1	ENST00000298596	human	ensembl	74_37	+1	known	silent	c.618	p.L206	0.002	NULL	pfam_Storkhead-box_winged-helix	-	no_errors	STOX1	HGNC	ENSG00000165730				154	0	0	84	30	26.3158
STOX1	0	genome.wustl.edu	37	10	70644504	70644504	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	70644504	70644504	C	T	SNP	STOX1	ENST00000298596	human	ensembl	74_37	+1	known	missense	c.952	p.R318C	1.000	NULL	pfam_Storkhead-box_winged-helix	-	no_errors	STOX1	HGNC	ENSG00000165730				130	0	0	102	7	6.42202
HKDC1	0	genome.wustl.edu	37	10	71017128	71017128	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	71017128	71017128	A	G	SNP	HKDC1	ENST00000354624	human	ensembl	74_37	+1	known	missense	c.1978	p.T660A	1.000	pfam_Hexokinase_N,prints_Hexokinase	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	HKDC1	HGNC	ENSG00000156510				148	0	0	134	10	6.94444
TACR2	0	genome.wustl.edu	37	10	71174709	71174709	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	71174709	71174709	C	T	SNP	TACR2	ENST00000373306	human	ensembl	74_37	-1	known	silent	c.579	p.T193	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_NK2_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_NK2_rcpt,prints_Neurokn_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	TACR2	HGNC	ENSG00000075073				43	0	0	35	8	18.6047
TSPAN15	0	genome.wustl.edu	37	10	71265925	71265925	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	71265925	71265925	G	A	SNP	TSPAN15	ENST00000373290	human	ensembl	74_37	+1	known	missense	c.664	p.A222T	1.000	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN15	HGNC	ENSG00000099282				75	0	0	72	22	23.4043
SFMBT2	0	genome.wustl.edu	37	10	7247845	7247845	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	7247845	7247845	A	T	SNP	SFMBT2	ENST00000361972	human	ensembl	74_37	-1	known	missense	c.1376	p.M459K	1.000	pfam_Mbt,smart_Mbt,pfscan_Mbt	pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,pfam_Pointed_dom,superfamily_SAM/pointed,superfamily_ARM-type_fold,smart_Mbt,smart_SAM,pfscan_Mbt	-	no_errors	SFMBT2	HGNC	ENSG00000198879				81	0	0	58	5	7.93651
SFMBT2	0	genome.wustl.edu	37	10	7409677	7409677	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	7409677	7409677	C	G	SNP	SFMBT2	ENST00000361972	human	ensembl	74_37	-1	known	missense	c.370	p.V124L	1.000	pfam_Mbt,smart_Mbt,pfscan_Mbt	pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,pfam_Pointed_dom,superfamily_SAM/pointed,superfamily_ARM-type_fold,smart_Mbt,smart_SAM,pfscan_Mbt	-	no_errors	SFMBT2	HGNC	ENSG00000198879				38	0	0	27	10	27.027
MCU	0	genome.wustl.edu	37	10	74628488	74628488	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	74628488	74628488	C	T	SNP	MCU	ENST00000373053	human	ensembl	74_37	+1	known	missense	c.524	p.T175M	0.998	pfam_Coiled-coil-dom_prot_109_C	pfam_Coiled-coil-dom_prot_109_C	-	no_errors	MCU	HGNC	ENSG00000156026				141	0	0	83	17	17
MCU	0	genome.wustl.edu	37	10	74631233	74631233	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	74631233	74631233	G	A	SNP	MCU	ENST00000373053	human	ensembl	74_37	+1	known	silent	c.756	p.R252	1.000	pfam_Coiled-coil-dom_prot_109_C	pfam_Coiled-coil-dom_prot_109_C	-	no_errors	MCU	HGNC	ENSG00000156026				163	1	0.609756	106	42	28.3784
NUDT13	0	genome.wustl.edu	37	10	74879836	74879836	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	74879836	74879836	G	A	SNP	NUDT13	ENST00000357321	human	ensembl	74_37	+1	known	silent	c.144	p.A48	0.467	pfam_NADH_PPase-like_N	pfam_NUDIX_hydrolase_dom,pfam_NADH_PPase-like_N,pfam_Znr_NADH_PPase,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	NUDT13	HGNC	ENSG00000166321				126	1	0.787402	95	11	10.3774
ECD	0	genome.wustl.edu	37	10	74899444	74899444	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	74899444	74899444	T	C	SNP	ECD	ENST00000430082	human	ensembl	74_37	-1	known	missense	c.1278	p.I426M	0.018	pfam_SGT1	pfam_SGT1	-	no_errors	ECD	HGNC	ENSG00000122882				326	0	0	265	20	7.01754
ECD	0	genome.wustl.edu	37	10	74916042	74916042	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	74916042	74916042	C	T	SNP	ECD	ENST00000430082	human	ensembl	74_37	-1	known	missense	c.581	p.R194H	1.000	pfam_SGT1	pfam_SGT1	-	no_errors	ECD	HGNC	ENSG00000122882				111	0	0	83	5	5.68182
TTC18	0	genome.wustl.edu	37	10	75071669	75071669	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	75071669	75071669	C	T	SNP	TTC18	ENST00000310715	human	ensembl	74_37	-1	known	missense	c.1297	p.A433T	0.040	NULL	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC18	HGNC	ENSG00000156042				135	0	0	109	8	6.83761
ITIH5	0	genome.wustl.edu	37	10	7605039	7605039	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	7605039	7605039	C	T	SNP	ITIH5	ENST00000256861	human	ensembl	74_37	-1	known	missense	c.2836	p.A946T	0.000	NULL	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH5	HGNC	ENSG00000123243				306	0	0	186	57	23.4568
ADK	0	genome.wustl.edu	37	10	76287827	76287827	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	76287827	76287827	C	T	SNP	ADK	ENST00000467840	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.979	-	-	-	no_errors	ADK	HGNC	ENSG00000156110				56	0	0	40	9	18.3673
DLG5	0	genome.wustl.edu	37	10	79554687	79554687	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	79554687	79554687	C	T	SNP	DLG5	ENST00000372391	human	ensembl	74_37	-1	known	silent	c.5466	p.P1822	0.426	pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,smart_GK/Ca_channel_bsu,pfscan_Guanylate_kin-like	pfam_PDZ,pfam_DUF622,pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,superfamily_PDZ,superfamily_SH3_domain,superfamily_DEATH-like_dom,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_CARD,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	DLG5	HGNC	ENSG00000151208				27	0	0	24	12	33.3333
NRG3	0	genome.wustl.edu	37	10	83635649	83635649	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	83635649	83635649	C	T	SNP	NRG3	ENST00000404547	human	ensembl	74_37	+1	known	missense	c.553	p.R185W	1.000	NULL	pfscan_EG-like_dom	-	no_errors	NRG3	HGNC	ENSG00000185737				52	0	0	29	9	23.6842
NRG3	0	genome.wustl.edu	37	10	84745044	84745044	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	84745044	84745044	A	G	SNP	NRG3	ENST00000404547	human	ensembl	74_37	+1	known	missense	c.1846	p.I616V	1.000	NULL	pfscan_EG-like_dom	-	no_errors	NRG3	HGNC	ENSG00000185737				134	0	0	90	34	27.4194
LRIT1	0	genome.wustl.edu	37	10	86001151	86001151	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	86001151	86001151	C	T	SNP	LRIT1	ENST00000372105	human	ensembl	74_37	-1	known	nonsense	c.45	p.W15*	0.004	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRIT1	HGNC	ENSG00000148602				8	0	0	5	5	50
OPN4	0	genome.wustl.edu	37	10	88416037	88416037	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	88416037	88416037	G	A	SNP	OPN4	ENST00000372071	human	ensembl	74_37	+1	known	silent	c.270	p.T90	0.999	pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Opsin	-	no_errors	OPN4	HGNC	ENSG00000122375				67	0	0	55	4	6.77966
PAPSS2	0	genome.wustl.edu	37	10	89503193	89503193	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	89503193	89503193	A	G	SNP	PAPSS2	ENST00000456849	human	ensembl	74_37	+1	known	missense	c.1286	p.D429G	1.000	pfam_Sulfurylase_cat_dom,tigrfam_Sulphate_adenylyltransferase	pfam_Sulfurylase_cat_dom,pfam_APS_kinase,superfamily_PUA-like_domain,superfamily_P-loop_NTPase,tigrfam_Sulphate_adenylyltransferase,tigrfam_APS_kinase	-	no_errors	PAPSS2	HGNC	ENSG00000198682				113	0	0	63	10	13.6986
PTEN	0	genome.wustl.edu	37	10	89717713	89717713	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	89717713	89717713	G	A	SNP	PTEN	ENST00000371953	human	ensembl	74_37	+1	known	silent	c.738	p.P246	0.041	pfam_Tensin_phosphatase_C2-dom,superfamily_C2_dom,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tensin_phosphatase_C2-dom	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_dom,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862				108	0	0	66	25	27.4725
LIPJ	0	genome.wustl.edu	37	10	90354523	90354523	+	Silent	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	90354523	90354523	T	C	SNP	LIPJ	ENST00000371939	human	ensembl	74_37	+1	known	silent	c.429	p.G143	1.000	pfam_AB_hydrolase_1	pfam_AB_hydrolase_lipase,pfam_AB_hydrolase_1	-	no_errors	LIPJ	HGNC	ENSG00000204022				54	0	0	52	10	16.129
PCGF5	0	genome.wustl.edu	37	10	93024260	93024260	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	93024260	93024260	C	T	SNP	PCGF5	ENST00000336126	human	ensembl	74_37	+1	known	nonsense	c.646	p.R216*	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PCGF5	HGNC	ENSG00000180628				155	0	0	82	32	28.0702
TNKS2	0	genome.wustl.edu	37	10	93600363	93600363	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	93600363	93600363	C	T	SNP	TNKS2	ENST00000371627	human	ensembl	74_37	+1	known	missense	c.1573	p.R525C	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_SAM_2,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_Poly(ADP-ribose)pol_cat_dom,prints_Ankyrin_rpt	-	no_errors	TNKS2	HGNC	ENSG00000107854				179	0	0	104	31	22.963
BTAF1	0	genome.wustl.edu	37	10	93726433	93726433	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	93726433	93726433	G	A	SNP	BTAF1	ENST00000265990	human	ensembl	74_37	+1	known	nonsense	c.1569	p.W523*	1.000	superfamily_ARM-type_fold	pfam_DUF3535,pfam_SNF2_N,pfam_HEAT,pfam_Helicase_C,superfamily_ARM-type_fold,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	BTAF1	HGNC	ENSG00000095564				114	0	0	78	23	22.7723
MYOF	0	genome.wustl.edu	37	10	95119595	95119595	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	95119595	95119595	C	T	SNP	MYOF	ENST00000359263	human	ensembl	74_37	-1	known	missense	c.3115	p.A1039T	0.610	NULL	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_dom,smart_C2_dom,smart_Peroxin/Ferlin,pfscan_C2_dom	-	no_errors	MYOF	HGNC	ENSG00000138119				110	0	0	77	31	28.7037
PLCE1	0	genome.wustl.edu	37	10	96005833	96005833	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	96005833	96005833	C	T	SNP	PLCE1	ENST00000260766	human	ensembl	74_37	+1	known	silent	c.2551	p.L851	1.000	superfamily_Ras_GEF_dom	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_Ras-assoc,pfam_RasGRF_CDC25,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_Ras_GEF_dom,superfamily_C2_dom,smart_RasGRF_CDC25,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,smart_Ras-assoc,pfscan_C2_dom,pfscan_Ras-assoc,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,pfscan_RasGRF_CDC25,prints_Pinositol_PLipase_C	-	no_errors	PLCE1	HGNC	ENSG00000138193				58	0	0	26	13	33.3333
CYP2C18	0	genome.wustl.edu	37	10	96447543	96447543	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	96447543	96447543	G	A	SNP	CYP2C18	ENST00000285979	human	ensembl	74_37	+1	known	missense	c.185	p.G62D	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2C18	HGNC	ENSG00000108242				180	0	0	116	28	19.4444
CYP2C18	0	genome.wustl.edu	37	10	96495057	96495057	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	96495057	96495057	G	T	SNP	CYP2C18	ENST00000285979	human	ensembl	74_37	+1	known	missense	c.1329	p.M443I	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2C18	HGNC	ENSG00000108242				111	0	0	81	26	24.2991
CYP2C19	0	genome.wustl.edu	37	10	96540303	96540303	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	96540303	96540303	G	A	SNP	CYP2C19	ENST00000371321	human	ensembl	74_37	+1	known	missense	c.529	p.V177M	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2C19	HGNC	ENSG00000165841				160	0	0	129	8	5.83942
CYP2C19	0	genome.wustl.edu	37	10	96602642	96602642	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	96602642	96602642	C	A	SNP	CYP2C19	ENST00000371321	human	ensembl	74_37	+1	known	missense	c.1010	p.P337H	1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2C19	HGNC	ENSG00000165841				120	0	0	73	30	29.1262
ALDH18A1	0	genome.wustl.edu	37	10	97371048	97371048	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	97371048	97371048	C	T	SNP	ALDH18A1	ENST00000371224	human	ensembl	74_37	-1	known	missense	c.2075	p.G692D	1.000	superfamily_Ald_DH/histidinol_DH,pirsf_P5_carboxy_syn,tigrfam_P5_carboxy_syn,tigrfam_G-glutamylP_reductase	pfam_Asp/Glu/Uridylate_kinase,pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,superfamily_Asp/Glu/Uridylate_kinase,pirsf_P5_carboxy_syn,prints_Glu/AcGlu_kinase,tigrfam_P5_carboxy_syn,tigrfam_G-glutamylP_reductase	-	no_errors	ALDH18A1	HGNC	ENSG00000059573				189	0	0	152	11	6.74847
ENTPD1	0	genome.wustl.edu	37	10	97605259	97605259	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	97605259	97605259	G	A	SNP	ENTPD1	ENST00000371207	human	ensembl	74_37	+1	known	missense	c.755	p.R252H	0.993	pfam_GDA1_CD39_NTPase	pfam_GDA1_CD39_NTPase	-	no_errors	ENTPD1	HGNC	ENSG00000138185				188	0	0	153	10	6.13497
CCNJ	0	genome.wustl.edu	37	10	97816981	97816981	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	97816981	97816981	G	A	SNP	CCNJ	ENST00000465148	human	ensembl	74_37	+1	known	silent	c.717	p.V239	0.999	pfam_Cyclin_C-dom,superfamily_Cyclin-like,smart_Cyclin-like	pfam_Cyclin_C-dom,pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNJ	HGNC	ENSG00000107443				125	0	0	94	25	21.0084
TLL2	0	genome.wustl.edu	37	10	98138803	98138803	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	98138803	98138803	G	A	SNP	TLL2	ENST00000357947	human	ensembl	74_37	-1	known	silent	c.2241	p.C747	0.994	pirsf_BMP_1/tolloid-like,pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pirsf_BMP_1/tolloid-like,pfam_CUB_dom,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,smart_Peptidase_Metallo,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,prints_Peptidase_M12A,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	TLL2	HGNC	ENSG00000095587				83	0	0	56	16	22.2222
C10orf12	0	genome.wustl.edu	37	10	98742563	98742563	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	98742563	98742563	C	A	SNP	C10orf12	ENST00000286067	human	ensembl	74_37	+1	known	nonsense	c.1416	p.C472*	0.000	NULL	NULL	-	no_errors	C10orf12	HGNC	ENSG00000155640				268	0	0	156	46	22.7723
ARHGAP19-SLIT1	0	genome.wustl.edu	37	10	99019239	99019239	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	99019239	99019239	C	T	SNP	ARHGAP19-SLIT1	ENST00000453547	human	ensembl	74_37	-1	known	missense	c.760	p.A254T	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP19-SLIT1	HGNC	ENSG00000269891				180	0	0	141	9	6
MMP1	0	genome.wustl.edu	37	11	102665947	102665947	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	102665947	102665947	G	A	SNP	MMP1	ENST00000315274	human	ensembl	74_37	-1	known	missense	c.857	p.A286V	1.000	pfam_Hemopexin-like_repeat,superfamily_Hemopexin-like_dom,smart_Hemopexin-like_repeat,pirsf_Pept_M10A_Metazoans	pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,pirsf_Pept_M10A_Metazoans,prints_Pept_M10A	-	no_errors	MMP1	HGNC	ENSG00000196611				117	0	0	53	21	28.3784
DYNC2H1	0	genome.wustl.edu	37	11	102987424	102987424	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	102987424	102987424	G	A	SNP	DYNC2H1	ENST00000398093	human	ensembl	74_37	+1	known	silent	c.747	p.L249	0.555	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240				194	0	0	139	30	17.7515
MUC6	0	genome.wustl.edu	37	11	1031216	1031216	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	1031216	1031216	C	T	SNP	MUC6	ENST00000421673	human	ensembl	74_37	-1	known	missense	c.527	p.C176Y	1.000	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	MUC6	HGNC	ENSG00000184956				10	0	0	6	3	33.3333
AMPD3	0	genome.wustl.edu	37	11	10524314	10524314	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	10524314	10524314	C	T	SNP	AMPD3	ENST00000396553	human	ensembl	74_37	+1	known	missense	c.1889	p.A630V	1.000	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	-	no_errors	AMPD3	HGNC	ENSG00000133805				204	0	0	150	8	5.06329
AMPD3	0	genome.wustl.edu	37	11	10527345	10527345	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	10527345	10527345	G	A	SNP	AMPD3	ENST00000396553	human	ensembl	74_37	+1	known	missense	c.2218	p.A740T	1.000	pirsf_AMP_deaminase,tigrfam_AMP_deaminase	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	-	no_errors	AMPD3	HGNC	ENSG00000133805				104	0	0	71	36	33.6449
GUCY1A2	0	genome.wustl.edu	37	11	106558464	106558464	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	106558464	106558464	T	A	SNP	GUCY1A2	ENST00000282249	human	ensembl	74_37	-1	known	missense	c.2103	p.E701D	1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase	pfam_Haem_no_assoc-bd,pfam_A/G_cyclase,pfam_Heme_NO-bd,superfamily_A/G_cyclase,superfamily_NO_sig/Golgi_transp_ligand-bd,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	GUCY1A2	HGNC	ENSG00000152402				124	0	0	72	28	28
ALKBH8	0	genome.wustl.edu	37	11	107381715	107381715	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	107381715	107381715	C	T	SNP	ALKBH8	ENST00000417449	human	ensembl	74_37	-1	known	silent	c.1344	p.R448	0.970	pfam_Methyltransf_11,pfam_Methyltransferase-rel	pfam_Methyltransf_11,pfam_AlkB_hom8_N,pfam_Oxoglu/Fe-dep_dioxygenase,pfam_Methyltransferase-rel	-	no_errors	ALKBH8	HGNC	ENSG00000137760				10	0	0	7	2	22.2222
ENSG00000268467	0	genome.wustl.edu	37	11	107462667	107462667	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	107462667	107462667	G	A	SNP	ENSG00000268467	ENST00000600612	human	ensembl	74_37	+1	known	missense	c.184	p.A62T	0.104	NULL	NULL	-	no_errors	AP000889.3	Clone_based_ensembl_gene	ENSG00000268467				11	0	0	8	7	46.6667
CUL5	0	genome.wustl.edu	37	11	107920682	107920682	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	107920682	107920682	C	A	SNP	CUL5	ENST00000393094	human	ensembl	74_37	+1	known	missense	c.300	p.F100L	1.000	pfam_Cullin_N,superfamily_Cullin_repeat-like_dom	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL5	HGNC	ENSG00000166266				69	0	0	56	26	31.7073
ACAT1	0	genome.wustl.edu	37	11	108013239	108013239	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	108013239	108013239	C	T	SNP	ACAT1	ENST00000265838	human	ensembl	74_37	+1	known	missense	c.902	p.A301V	1.000	superfamily_Thiolase-like,pirsf_Thiolase,tigrfam_Thiolase	pfam_Thiolase_N,pfam_Thiolase_C,pfam_Ketoacyl_synth_N,superfamily_Thiolase-like,pirsf_Thiolase,tigrfam_Thiolase	-	no_errors	ACAT1	HGNC	ENSG00000075239				52	0	0	35	8	18.6047
NPAT	0	genome.wustl.edu	37	11	108043647	108043647	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	108043647	108043647	C	T	SNP	NPAT	ENST00000278612	human	ensembl	74_37	-1	known	silent	c.2064	p.T688	0.003	NULL	smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	NPAT	HGNC	ENSG00000149308				56	0	0	51	17	25
EXPH5	0	genome.wustl.edu	37	11	108409786	108409786	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	108409786	108409786	C	A	SNP	EXPH5	ENST00000265843	human	ensembl	74_37	-1	known	missense	c.408	p.K136N	0.984	NULL	superfamily_Znf_FYVE_PHD,pfscan_Znf_FYVE-typ	-	no_errors	EXPH5	HGNC	ENSG00000110723				177	0	0	133	26	16.3522
DDX10	0	genome.wustl.edu	37	11	108577481	108577481	+	Silent	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	108577481	108577481	T	C	SNP	DDX10	ENST00000322536	human	ensembl	74_37	+1	known	silent	c.1239	p.G413	0.970	superfamily_P-loop_NTPase,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX10	HGNC	ENSG00000178105				217	0	0	153	46	23.1156
ZC3H12C	0	genome.wustl.edu	37	11	110035523	110035523	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	110035523	110035523	G	A	SNP	ZC3H12C	ENST00000278590	human	ensembl	74_37	+1	known	silent	c.1713	p.T571	0.997	NULL	pfam_RNase_Zc3h12	-	no_errors	ZC3H12C	HGNC	ENSG00000149289				94	0	0	93	8	7.92079
ZC3H12C	0	genome.wustl.edu	37	11	110035979	110035979	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	110035979	110035979	C	T	SNP	ZC3H12C	ENST00000278590	human	ensembl	74_37	+1	known	silent	c.2169	p.G723	0.056	NULL	pfam_RNase_Zc3h12	-	no_errors	ZC3H12C	HGNC	ENSG00000149289				146	0	0	107	8	6.95652
RDX	0	genome.wustl.edu	37	11	110102620	110102620	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	110102620	110102620	G	A	SNP	RDX	ENST00000530749	human	ensembl	74_37	-1	known	missense	c.1726	p.R576C	1.000	pirsf_ERM,pfam_ERM_C_dom,superfamily_Moesin_tail,prints_Ez/rad/moesin_like	pirsf_ERM,pfam_ERM_C_dom,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,superfamily_Moesin_tail,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Band_41_domain,prints_Ez/rad/moesin_like,prints_Band_41_fam,pfscan_FERM_domain	-	no_errors	RDX	HGNC	ENSG00000137710				257	0	0	233	20	7.90514
ARHGAP20	0	genome.wustl.edu	37	11	110451712	110451712	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	110451712	110451712	C	T	SNP	ARHGAP20	ENST00000260283	human	ensembl	74_37	-1	known	missense	c.1958	p.R653Q	0.000	NULL	pfam_RhoGAP_dom,pfam_Ras-assoc,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Ras-assoc,pfscan_RhoGAP_dom	-	no_errors	ARHGAP20	HGNC	ENSG00000137727				42	0	0	17	11	39.2857
ARHGAP20	0	genome.wustl.edu	37	11	110477373	110477373	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	110477373	110477373	C	A	SNP	ARHGAP20	ENST00000260283	human	ensembl	74_37	-1	known	missense	c.876	p.E292D	0.814	pfscan_Ras-assoc	pfam_RhoGAP_dom,pfam_Ras-assoc,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Ras-assoc,pfscan_RhoGAP_dom	-	no_errors	ARHGAP20	HGNC	ENSG00000137727				164	0	0	133	10	6.99301
SIK2	0	genome.wustl.edu	37	11	111582989	111582989	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	111582989	111582989	C	T	SNP	SIK2	ENST00000304987	human	ensembl	74_37	+1	known	nonsense	c.1156	p.R386*	1.000	pirsf_Ser/Thr_kinase_SIK1/2	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kinase_SIK1/2,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	SIK2	HGNC	ENSG00000170145				91	0	0	50	19	27.5362
TIMM8B	0	genome.wustl.edu	37	11	111956131	111956131	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	111956131	111956131	C	T	SNP	TIMM8B	ENST00000541231	human	ensembl	74_37	-1	known	missense	c.185	p.R62H	0.999	pfam_Tim10/DDP_fam_Znf,superfamily_Tim10/DDP_fam_Znf	pfam_Tim10/DDP_fam_Znf,superfamily_Tim10/DDP_fam_Znf	-	no_errors	TIMM8B	HGNC	ENSG00000150779				67	0	0	41	10	19.6078
BCO2	0	genome.wustl.edu	37	11	112050080	112050080	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	112050080	112050080	G	A	SNP	BCO2	ENST00000357685	human	ensembl	74_37	+1	known	silent	c.168	p.P56	0.018	NULL	pfam_Carotenoid_Oase	-	no_errors	BCO2	HGNC	ENSG00000197580				81	0	0	68	6	8.10811
BCO2	0	genome.wustl.edu	37	11	112071486	112071486	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	112071486	112071486	G	A	SNP	BCO2	ENST00000357685	human	ensembl	74_37	+1	known	missense	c.1016	p.R339H	0.997	pfam_Carotenoid_Oase	pfam_Carotenoid_Oase	-	no_errors	BCO2	HGNC	ENSG00000197580				153	0	0	123	8	6.10687
CLDN25	0	genome.wustl.edu	37	11	113651128	113651128	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	113651128	113651128	T	C	SNP	CLDN25	ENST00000453129	human	ensembl	74_37	+1	known	missense	c.611	p.V204A	0.012	NULL	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin	-	no_errors	CLDN25	HGNC	ENSG00000228607				71	0	0	51	21	29.1667
NNMT	0	genome.wustl.edu	37	11	114182863	114182863	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	114182863	114182863	C	T	SNP	NNMT	ENST00000299964	human	ensembl	74_37	+1	known	silent	c.459	p.P153	0.001	pfam_NNMT_TEMT_trans,pirsf_NNMT_TEMT_trans	pfam_NNMT_TEMT_trans,pirsf_NNMT_TEMT_trans	-	no_errors	NNMT	HGNC	ENSG00000166741				47	0	0	43	6	12.2449
RBM7	0	genome.wustl.edu	37	11	114278293	114278293	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	114278293	114278293	T	C	SNP	RBM7	ENST00000540163	human	ensembl	74_37	+1	known	missense	c.565	p.W189R	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM7	HGNC	ENSG00000076053				123	0	0	62	35	36.0825
NXPE1	0	genome.wustl.edu	37	11	114401373	114401373	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	114401373	114401373	G	A	SNP	NXPE1	ENST00000424269	human	ensembl	74_37	-1	known	silent	c.357	p.D119	0.143	superfamily_Ig_E-set	pfam_NXPH/NXPE,superfamily_Ig_E-set	-	no_errors	NXPE1	HGNC	ENSG00000095110				89	0	0	68	6	8.10811
APOA5	0	genome.wustl.edu	37	11	116661211	116661211	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	116661211	116661211	C	T	SNP	APOA5	ENST00000227665	human	ensembl	74_37	-1	known	missense	c.734	p.R245H	0.701	pfam_ApoA1_A4_E	pfam_ApoA1_A4_E	-	no_errors	APOA5	HGNC	ENSG00000110243				21	0	0	17	4	19.0476
CEP164	0	genome.wustl.edu	37	11	117251377	117251377	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	117251377	117251377	C	T	SNP	CEP164	ENST00000278935	human	ensembl	74_37	+1	known	silent	c.1365	p.S455	0.975	NULL	superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	CEP164	HGNC	ENSG00000110274				16	0	0	10	4	28.5714
CEP164	0	genome.wustl.edu	37	11	117253605	117253605	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	117253605	117253605	G	T	SNP	CEP164	ENST00000278935	human	ensembl	74_37	+1	known	missense	c.1671	p.E557D	0.805	NULL	superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	CEP164	HGNC	ENSG00000110274				34	0	0	24	8	25
DSCAML1	0	genome.wustl.edu	37	11	117308798	117308798	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	117308798	117308798	G	A	SNP	DSCAML1	ENST00000321322	human	ensembl	74_37	-1	known	silent	c.4425	p.G1475	0.999	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DSCAML1	HGNC	ENSG00000177103				50	0	0	25	6	19.3548
DSCAML1	0	genome.wustl.edu	37	11	117332302	117332302	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	117332302	117332302	C	A	SNP	DSCAML1	ENST00000321322	human	ensembl	74_37	-1	known	missense	c.3456	p.Q1152H	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DSCAML1	HGNC	ENSG00000177103				37	0	0	35	13	27.0833
TMPRSS13	0	genome.wustl.edu	37	11	117787928	117787928	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	117787928	117787928	G	A	SNP	TMPRSS13	ENST00000445164	human	ensembl	74_37	-1	known	silent	c.513	p.C171	0.009	pirsf_Peptidase_S1A_TMPRSS13	pirsf_Peptidase_S1A_TMPRSS13,pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,superfamily_Srcr_rcpt-rel,superfamily_LDrepeatLR_classA_rpt,smart_Srcr_rcpt-rel,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_SRCR,pfscan_Peptidase_S1	-	no_errors	TMPRSS13	HGNC	ENSG00000137747				19	0	0	24	11	31.4286
KMT2A	0	genome.wustl.edu	37	11	118369241	118369241	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	118369241	118369241	G	A	SNP	KMT2A	ENST00000389506	human	ensembl	74_37	+1	known	missense	c.5950	p.E1984K	1.000	superfamily_Znf_FYVE_PHD,pirsf_MeTrfase_trithorax	pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_Bromodomain,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pirsf_MeTrfase_trithorax,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC,pfscan_Bromodomain	-	no_errors	KMT2A	HGNC	ENSG00000118058				171	0	0	143	29	16.8605
KMT2A	0	genome.wustl.edu	37	11	118373253	118373253	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	118373253	118373253	A	G	SNP	KMT2A	ENST00000389506	human	ensembl	74_37	+1	known	missense	c.6637	p.M2213V	0.651	pirsf_MeTrfase_trithorax	pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_Bromodomain,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pirsf_MeTrfase_trithorax,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC,pfscan_Bromodomain	-	no_errors	KMT2A	HGNC	ENSG00000118058				76	0	0	57	11	16.1765
PHLDB1	0	genome.wustl.edu	37	11	118501928	118501928	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	118501928	118501928	G	A	SNP	PHLDB1	ENST00000361417	human	ensembl	74_37	+1	known	missense	c.1832	p.R611H	1.000	NULL	pfam_Pleckstrin_homology,superfamily_SMAD_FHA_domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB1	HGNC	ENSG00000019144				227	0	0	179	14	7.25389
PHLDB1	0	genome.wustl.edu	37	11	118512986	118512986	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	118512986	118512986	G	A	SNP	PHLDB1	ENST00000361417	human	ensembl	74_37	+1	known	silent	c.2751	p.L917	0.963	NULL	pfam_Pleckstrin_homology,superfamily_SMAD_FHA_domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB1	HGNC	ENSG00000019144				64	0	0	48	17	26.1538
HYOU1	0	genome.wustl.edu	37	11	118921765	118921765	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	118921765	118921765	G	A	SNP	HYOU1	ENST00000404233	human	ensembl	74_37	-1	known	silent	c.1647	p.G549	0.016	pfam_Hsp_70_fam,prints_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HYOU1	HGNC	ENSG00000149428				53	0	0	38	9	19.1489
VPS11	0	genome.wustl.edu	37	11	118949009	118949009	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	118949009	118949009	C	T	SNP	VPS11	ENST00000300793	human	ensembl	74_37	+1	known	nonsense	c.1885	p.R629*	0.424	superfamily_ARM-type_fold,pirsf_VPS11	pfam_VPS11_C,pfam_Clathrin_H-chain/VPS_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_RING,pirsf_VPS11,pfscan_Znf_RING	-	no_errors	VPS11	HGNC	ENSG00000160695				177	0	0	92	37	28.6822
MFRP	0	genome.wustl.edu	37	11	119213674	119213674	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	119213674	119213674	C	T	SNP	MFRP	ENST00000360167	human	ensembl	74_37	-1	novel	missense	c.938	p.R313H	0.000	NULL	pfam_CUB_dom,pfam_Frizzled_dom,pfam_LDrepeatLR_classA_rpt,superfamily_CUB_dom,superfamily_Frizzled_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,smart_Frizzled_dom,pfscan_CUB_dom,pfscan_Frizzled_dom,pfscan_LDrepeatLR_classA_rpt	-	no_errors	MFRP	HGNC	ENSG00000235718				12	0	0	8	7	46.6667
ARHGEF12	0	genome.wustl.edu	37	11	120317151	120317151	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	120317151	120317151	G	A	SNP	ARHGEF12	ENST00000356641	human	ensembl	74_37	+1	known	missense	c.1328	p.R443H	1.000	pfam_RGS-like_dom,superfamily_Regulat_G_prot_signal_superfam	pfam_RGS-like_dom,pfam_DH-domain,pfam_PDZ,superfamily_Regulat_G_prot_signal_superfam,superfamily_DH-domain,superfamily_PDZ,smart_PDZ,smart_DH-domain,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF12	HGNC	ENSG00000196914				89	0	0	62	14	18.4211
UBASH3B	0	genome.wustl.edu	37	11	122650347	122650347	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	122650347	122650347	C	T	SNP	UBASH3B	ENST00000284273	human	ensembl	74_37	+1	known	missense	c.545	p.A182V	1.000	superfamily_RNA_ligase/cNuc_Pdiesterase	pfam_His_Pase_superF_clade-1,pfam_SH3_domain,pfam_UBA/Ts_N,superfamily_UBA-like,superfamily_SH3_domain,superfamily_RNA_ligase/cNuc_Pdiesterase,smart_UBA/transl_elong_EF1B_N_euk,smart_SH3_domain,pfscan_SH3_domain,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBASH3B	HGNC	ENSG00000154127				111	0	0	65	18	21.6867
CLMP	0	genome.wustl.edu	37	11	122955287	122955287	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	122955287	122955287	G	A	SNP	CLMP	ENST00000448775	human	ensembl	74_37	-1	known	silent	c.321	p.G107	0.996	pfam_Ig_V-set,pfam_Ig_I-set,pfam_CD47_Vset,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Ig_I-set,pfam_CD47_Vset,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	CLMP	HGNC	ENSG00000166250				61	0	0	53	18	25.3521
GRAMD1B	0	genome.wustl.edu	37	11	123479434	123479434	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	123479434	123479434	C	T	SNP	GRAMD1B	ENST00000322282	human	ensembl	74_37	+1	known	silent	c.1152	p.S384	0.462	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD1B	HGNC	ENSG00000023171				14	0	0	18	5	21.7391
ZNF202	0	genome.wustl.edu	37	11	123596942	123596942	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	123596942	123596942	G	A	SNP	ZNF202	ENST00000336139	human	ensembl	74_37	-1	known	silent	c.1710	p.C570	0.998	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF202	HGNC	ENSG00000166261				59	0	0	33	8	19.5122
OR6M1	0	genome.wustl.edu	37	11	123676505	123676505	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	123676505	123676505	C	T	SNP	OR6M1	ENST00000309154	human	ensembl	74_37	-1	known	missense	c.553	p.A185T	0.207	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6M1	HGNC	ENSG00000196099				60	0	0	47	10	17.5439
OR10G8	0	genome.wustl.edu	37	11	123900389	123900389	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	123900389	123900389	G	A	SNP	OR10G8	ENST00000431524	human	ensembl	74_37	+1	known	silent	c.60	p.A20	0.003	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10G8	HGNC	ENSG00000234560				188	0	0	115	26	18.4397
OR10G8	0	genome.wustl.edu	37	11	123900887	123900887	+	Silent	SNP	G	G	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	123900887	123900887	G	C	SNP	OR10G8	ENST00000431524	human	ensembl	74_37	+1	known	silent	c.558	p.L186	0.960	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10G8	HGNC	ENSG00000234560				159	0	0	146	10	6.41026
OR8B2	0	genome.wustl.edu	37	11	124252940	124252940	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	124252940	124252940	C	T	SNP	OR8B2	ENST00000375013	human	ensembl	74_37	-1	known	silent	c.300	p.R100	0.935	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8B2	HGNC	ENSG00000204293				159	1	0.625	113	35	23.6486
OR8B3	0	genome.wustl.edu	37	11	124266483	124266483	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	124266483	124266483	C	T	SNP	OR8B3	ENST00000354597	human	ensembl	74_37	-1	known	silent	c.765	p.A255	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8B3	HGNC	ENSG00000196661				106	0	0	73	36	33.0275
OR8B8	0	genome.wustl.edu	37	11	124310510	124310510	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	124310510	124310510	C	T	SNP	OR8B8	ENST00000328064	human	ensembl	74_37	-1	known	missense	c.472	p.A158T	0.189	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8B8	HGNC	ENSG00000197125				86	0	0	56	21	27.2727
ESAM	0	genome.wustl.edu	37	11	124623849	124623849	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	124623849	124623849	G	A	SNP	ESAM	ENST00000278927	human	ensembl	74_37	-1	known	missense	c.866	p.A289V	0.994	NULL	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	ESAM	HGNC	ENSG00000149564				23	0	0	10	4	28.5714
ESAM	0	genome.wustl.edu	37	11	124624540	124624540	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	124624540	124624540	T	C	SNP	ESAM	ENST00000278927	human	ensembl	74_37	-1	known	missense	c.727	p.T243A	0.999	NULL	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	ESAM	HGNC	ENSG00000149564				181	0	0	119	38	24.2038
ROBO3	0	genome.wustl.edu	37	11	124735609	124735609	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	124735609	124735609	C	T	SNP	ROBO3	ENST00000397801	human	ensembl	74_37	+1	known	missense	c.136	p.P46S	0.913	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO3	HGNC	ENSG00000154134				20	0	0	9	4	30.7692
ROBO3	0	genome.wustl.edu	37	11	124747625	124747625	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	124747625	124747625	G	A	SNP	ROBO3	ENST00000532472	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ROBO3	HGNC	ENSG00000154134				10	0	0	3	6	66.6667
ROBO3	0	genome.wustl.edu	37	11	124749437	124749437	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	124749437	124749437	G	T	SNP	ROBO3	ENST00000397801	human	ensembl	74_37	+1	known	missense	c.3762	p.K1254N	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO3	HGNC	ENSG00000154134				23	0	0	20	6	23.0769
SLC37A2	0	genome.wustl.edu	37	11	124955002	124955002	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	124955002	124955002	C	T	SNP	SLC37A2	ENST00000298280	human	ensembl	74_37	+1	known	missense	c.1129	p.R377C	0.160	pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC37A2	HGNC	ENSG00000134955				57	0	0	26	11	29.7297
CDON	0	genome.wustl.edu	37	11	125853941	125853941	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	125853941	125853941	T	C	SNP	CDON	ENST00000392693	human	ensembl	74_37	-1	known	missense	c.2821	p.T941A	0.992	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CDON	HGNC	ENSG00000064309				58	0	0	33	17	34
FOXRED1	0	genome.wustl.edu	37	11	126144908	126144908	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	126144908	126144908	C	T	SNP	FOXRED1	ENST00000263578	human	ensembl	74_37	+1	known	missense	c.623	p.A208V	0.999	pfam_FAD-dep_OxRdtase	pfam_FAD-dep_OxRdtase	-	no_errors	FOXRED1	HGNC	ENSG00000110074				44	0	0	37	9	19.5652
MUC5B	0	genome.wustl.edu	37	11	1281031	1281031	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	1281031	1281031	G	A	SNP	MUC5B	ENST00000447027	human	ensembl	74_37	+1	known	missense	c.16768	p.V5590I	0.543	pfscan_VWF_C	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983				44	0	0	20	9	31.0345
ETS1	0	genome.wustl.edu	37	11	128350146	128350146	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	128350146	128350146	G	A	SNP	ETS1	ENST00000392668	human	ensembl	74_37	-1	known	missense	c.1063	p.R355C	1.000	pirsf_Transform_prot_C-ets	pfam_Ets_dom,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets_dom,pirsf_Transform_prot_C-ets,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ETS1	HGNC	ENSG00000134954				21	0	0	20	9	31.0345
C11orf45	0	genome.wustl.edu	37	11	128773396	128773396	+	Silent	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	128773396	128773396	G	T	SNP	C11orf45	ENST00000310799	human	ensembl	74_37	-1	known	silent	c.147	p.A49	0.000	NULL	NULL	-	no_errors	C11orf45	HGNC	ENSG00000174370				45	0	0	27	7	20.5882
ARHGAP32	0	genome.wustl.edu	37	11	128993351	128993351	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	128993351	128993351	C	T	SNP	ARHGAP32	ENST00000310343	human	ensembl	74_37	-1	known	missense	c.392	p.G131D	1.000	superfamily_Phox	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,pfam_Phox,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Phox,smart_SH3_domain,smart_RhoGAP_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP32	HGNC	ENSG00000134909				42	0	0	31	10	24.3902
TMEM45B	0	genome.wustl.edu	37	11	129722528	129722528	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	129722528	129722528	G	A	SNP	TMEM45B	ENST00000281441	human	ensembl	74_37	+1	known	missense	c.151	p.A51T	0.000	NULL	pfam_DUF716_TMEM45	-	no_errors	TMEM45B	HGNC	ENSG00000151715				94	0	0	59	20	25.3165
NFRKB	0	genome.wustl.edu	37	11	129740016	129740016	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	129740016	129740016	C	T	SNP	NFRKB	ENST00000524794	human	ensembl	74_37	-1	known	silent	c.2979	p.T993	0.957	NULL	NULL	-	no_errors	NFRKB	HGNC	ENSG00000170322				151	0	0	102	8	7.27273
PRDM10	0	genome.wustl.edu	37	11	129817095	129817095	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	129817095	129817095	C	T	SNP	PRDM10	ENST00000358825	human	ensembl	74_37	-1	known	silent	c.465	p.T155	0.193	NULL	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	PRDM10	HGNC	ENSG00000170325				53	0	0	43	6	12.2449
ZBTB44	0	genome.wustl.edu	37	11	130108387	130108387	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	130108387	130108387	G	A	SNP	ZBTB44	ENST00000357899	human	ensembl	74_37	-1	known	nonsense	c.1219	p.R407*	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB44	HGNC	ENSG00000196323				13	0	0	14	5	26.3158
ADAMTS15	0	genome.wustl.edu	37	11	130341117	130341117	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	130341117	130341117	G	A	SNP	ADAMTS15	ENST00000299164	human	ensembl	74_37	+1	known	silent	c.1917	p.T639	0.000	NULL	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS,prints_Pept_M12B_ADAM-TS8	-	no_errors	ADAMTS15	HGNC	ENSG00000166106				25	0	0	33	12	26.6667
IGSF9B	0	genome.wustl.edu	37	11	133791085	133791085	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	133791085	133791085	C	T	SNP	IGSF9B	ENST00000321016	human	ensembl	74_37	-1	known	silent	c.2535	p.T845	0.477	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	IGSF9B	HGNC	ENSG00000080854				46	0	0	25	6	19.3548
IGSF9B	0	genome.wustl.edu	37	11	133794728	133794728	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	133794728	133794728	G	A	SNP	IGSF9B	ENST00000321016	human	ensembl	74_37	-1	known	silent	c.2106	p.G702	0.294	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	IGSF9B	HGNC	ENSG00000080854				121	0	0	67	13	16.25
ARNTL	0	genome.wustl.edu	37	11	13402723	13402723	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	13402723	13402723	G	A	SNP	ARNTL	ENST00000403290	human	ensembl	74_37	+1	known	silent	c.1539	p.S513	0.003	NULL	pfam_PAS_fold,pfam_PAS_fold_3,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,prints_Nuc_translocat,pfscan_PAS,pfscan_bHLH_dom,tigrfam_PAS	-	no_errors	ARNTL	HGNC	ENSG00000133794				135	0	0	88	31	26.0504
GLB1L2	0	genome.wustl.edu	37	11	134240273	134240273	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	134240273	134240273	G	A	SNP	GLB1L2	ENST00000339772	human	ensembl	74_37	+1	known	missense	c.1195	p.A399T	0.937	NULL	pfam_Glycoside_Hdrlase_35,pfam_Glyco_hydro_42_N,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,prints_Glycoside_Hdrlase_35	-	no_errors	GLB1L2	HGNC	ENSG00000149328				131	0	0	67	25	27.1739
SPON1	0	genome.wustl.edu	37	11	14276113	14276113	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	14276113	14276113	G	A	SNP	SPON1	ENST00000310358	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.067	-	-	-	no_errors	SPON1	HGNC	ENSG00000152268				49	0	0	30	8	21.0526
PLEKHA7	0	genome.wustl.edu	37	11	16837748	16837748	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	16837748	16837748	C	T	SNP	PLEKHA7	ENST00000448080	human	ensembl	74_37	-1	known	missense	c.1930	p.A644T	1.000	NULL	pfam_Pleckstrin_homology,pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_WW_dom	-	no_errors	PLEKHA7	HGNC	ENSG00000166689				27	0	0	23	15	39.4737
PLEKHA7	0	genome.wustl.edu	37	11	16892710	16892710	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	16892710	16892710	C	T	SNP	PLEKHA7	ENST00000448080	human	ensembl	74_37	-1	known	missense	c.241	p.A81T	0.981	pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	pfam_Pleckstrin_homology,pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_WW_dom	-	no_errors	PLEKHA7	HGNC	ENSG00000166689				104	0	0	43	19	30.6452
KRTAP5-6	0	genome.wustl.edu	37	11	1718528	1718528	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	1718528	1718528	G	A	SNP	KRTAP5-6	ENST00000382160	human	ensembl	74_37	+1	known	missense	c.53	p.G18D	0.895	NULL	NULL	-	no_errors	KRTAP5-6	HGNC	ENSG00000205864				98	0	0	86	8	8.51064
TPH1	0	genome.wustl.edu	37	11	18048170	18048170	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	18048170	18048170	G	A	SNP	TPH1	ENST00000341556	human	ensembl	74_37	-1	known	missense	c.670	p.R224C	1.000	pfam_Aromatic-AA_hydroxylase_C,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,tigrfam_Trp_5_mOase	pfam_Aromatic-AA_hydroxylase_C,pfam_ACT_dom,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,prints_Aromatic-AA_hydroxylase_C,tigrfam_Trp_5_mOase	-	no_errors	TPH1	HGNC	ENSG00000129167				69	0	0	63	13	17.1053
SPTY2D1	0	genome.wustl.edu	37	11	18636593	18636593	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	18636593	18636593	G	A	SNP	SPTY2D1	ENST00000336349	human	ensembl	74_37	-1	known	nonsense	c.1228	p.R410*	0.091	NULL	pfam_Chromatin_SPT2,smart_Chromatin_SPT2	-	no_errors	SPTY2D1	HGNC	ENSG00000179119				41	0	0	38	4	9.52381
TMEM86A	0	genome.wustl.edu	37	11	18722705	18722705	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	18722705	18722705	G	A	SNP	TMEM86A	ENST00000280734	human	ensembl	74_37	+1	known	missense	c.247	p.A83T	1.000	pfam_YhhN	pfam_YhhN	-	no_errors	TMEM86A	HGNC	ENSG00000151117				104	0	0	56	20	26.3158
NAV2	0	genome.wustl.edu	37	11	20077375	20077375	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	20077375	20077375	G	A	SNP	NAV2	ENST00000396087	human	ensembl	74_37	+1	known	missense	c.4772	p.S1591N	1.000	NULL	pfam_CH-domain,superfamily_CH-domain,superfamily_P-loop_NTPase,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV2	HGNC	ENSG00000166833				107	0	0	57	11	16.1765
MPPED2	0	genome.wustl.edu	37	11	30601840	30601840	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	30601840	30601840	C	T	SNP	MPPED2	ENST00000358117	human	ensembl	74_37	-1	known	silent	c.81	p.T27	0.287	NULL	pfam_PEstase_dom	-	no_errors	MPPED2	HGNC	ENSG00000066382				80	0	0	52	15	22.3881
EIF3M	0	genome.wustl.edu	37	11	32615446	32615446	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	32615446	32615446	G	A	SNP	EIF3M	ENST00000531120	human	ensembl	74_37	+1	known	missense	c.568	p.G190R	1.000	superfamily_ARM-type_fold	pfam_PCI_dom,superfamily_ARM-type_fold,smart_PCI_dom	-	no_errors	EIF3M	HGNC	ENSG00000149100				96	0	0	67	24	26.3736
QSER1	0	genome.wustl.edu	37	11	32975681	32975681	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	32975681	32975681	C	T	SNP	QSER1	ENST00000399302	human	ensembl	74_37	+1	known	missense	c.4069	p.R1357C	1.000	NULL	NULL	-	no_errors	QSER1	HGNC	ENSG00000060749				94	0	0	79	20	20.202
CSTF3	0	genome.wustl.edu	37	11	33120306	33120306	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	33120306	33120306	C	T	SNP	CSTF3	ENST00000323959	human	ensembl	74_37	-1	known	missense	c.1058	p.R353H	1.000	NULL	pfam_Suf,smart_HAT	-	no_errors	CSTF3	HGNC	ENSG00000176102				195	0	0	164	28	14.5833
KIAA1549L	0	genome.wustl.edu	37	11	33565790	33565790	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	33565790	33565790	A	G	SNP	KIAA1549L	ENST00000389726	human	ensembl	74_37	+1	known	missense	c.1790	p.H597R	0.002	NULL	NULL	-	no_errors	KIAA1549L	HGNC	ENSG00000110427				132	1	0.75188	118	7	5.6
LMO2	0	genome.wustl.edu	37	11	33881013	33881013	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	33881013	33881013	G	A	SNP	LMO2	ENST00000257818	human	ensembl	74_37	-1	known	silent	c.573	p.C191	0.943	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LMO2	HGNC	ENSG00000135363				63	0	0	46	25	35.2113
ABTB2	0	genome.wustl.edu	37	11	34218942	34218942	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	34218942	34218942	G	A	SNP	ABTB2	ENST00000435224	human	ensembl	74_37	-1	known	missense	c.1174	p.R392W	1.000	NULL	pfam_BTB_POZ,pfam_Ankyrin_rpt,superfamily_Histone-fold,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like	-	no_errors	ABTB2	HGNC	ENSG00000166016				40	0	0	30	8	21.0526
ELF5	0	genome.wustl.edu	37	11	34515211	34515211	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	34515211	34515211	C	T	SNP	ELF5	ENST00000312319	human	ensembl	74_37	-1	known	missense	c.200	p.R67H	1.000	pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom	pfam_Ets_dom,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ELF5	HGNC	ENSG00000135374				64	0	0	40	8	16.6667
EHF	0	genome.wustl.edu	37	11	34680177	34680177	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	34680177	34680177	C	T	SNP	EHF	ENST00000257831	human	ensembl	74_37	+1	known	silent	c.705	p.G235	0.998	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	pfam_Ets_dom,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	EHF	HGNC	ENSG00000135373				119	0	0	77	14	15.3846
PDHX	0	genome.wustl.edu	37	11	34988196	34988196	+	Silent	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	34988196	34988196	C	A	SNP	PDHX	ENST00000227868	human	ensembl	74_37	+1	known	silent	c.651	p.L217	0.997	pfam_E3-bd,superfamily_E3-bd	pfam_2-oxoacid_DH_actylTfrase,pfam_Biotin_lipoyl,pfam_E3-bd,superfamily_Single_hybrid_motif,superfamily_E3-bd,pfscan_Biotin_lipoyl	-	no_errors	PDHX	HGNC	ENSG00000110435				181	0	0	107	35	24.6479
PDHX	0	genome.wustl.edu	37	11	34988232	34988232	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	34988232	34988232	C	T	SNP	PDHX	ENST00000227868	human	ensembl	74_37	+1	known	silent	c.687	p.T229	0.046	NULL	pfam_2-oxoacid_DH_actylTfrase,pfam_Biotin_lipoyl,pfam_E3-bd,superfamily_Single_hybrid_motif,superfamily_E3-bd,pfscan_Biotin_lipoyl	-	no_errors	PDHX	HGNC	ENSG00000110435				121	0	0	80	23	22.3301
LDLRAD3	0	genome.wustl.edu	37	11	36250736	36250736	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	36250736	36250736	C	T	SNP	LDLRAD3	ENST00000315571	human	ensembl	74_37	+1	known	missense	c.827	p.P276L	0.996	NULL	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LDLRAD3	HGNC	ENSG00000179241				132	0	0	78	21	21.2121
LDLRAD3	0	genome.wustl.edu	37	11	36250849	36250849	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	36250849	36250849	G	A	SNP	LDLRAD3	ENST00000315571	human	ensembl	74_37	+1	known	missense	c.940	p.V314M	0.012	NULL	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LDLRAD3	HGNC	ENSG00000179241				33	0	0	35	5	12.5
COMMD9	0	genome.wustl.edu	37	11	36300147	36300147	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	36300147	36300147	C	T	SNP	COMMD9	ENST00000263401	human	ensembl	74_37	-1	known	missense	c.197	p.R66H	0.977	pfam_HCaRG	pfam_HCaRG	-	no_errors	COMMD9	HGNC	ENSG00000110442				52	0	0	19	5	20.8333
RAG1	0	genome.wustl.edu	37	11	36595270	36595270	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	36595270	36595270	G	A	SNP	RAG1	ENST00000299440	human	ensembl	74_37	+1	known	missense	c.416	p.G139D	0.019	NULL	pfam_Znf_VDJ_recomb-activ_1,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RAG1	HGNC	ENSG00000166349				101	0	0	60	21	25.9259
PGAP2	0	genome.wustl.edu	37	11	3845179	3845179	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	3845179	3845179	C	T	SNP	PGAP2	ENST00000278243	human	ensembl	74_37	+1	known	missense	c.415	p.R139C	1.000	pfam_Frag1/DRAM/Sfk1	pfam_Frag1/DRAM/Sfk1	-	no_errors	PGAP2	HGNC	ENSG00000148985				54	0	0	57	5	8.06452
LRRC4C	0	genome.wustl.edu	37	11	40136706	40136706	+	Silent	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	40136706	40136706	T	C	SNP	LRRC4C	ENST00000527150	human	ensembl	74_37	-1	known	silent	c.1137	p.T379	0.713	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	LRRC4C	HGNC	ENSG00000148948				104	0	0	54	18	25
TTC17	0	genome.wustl.edu	37	11	43513699	43513699	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	43513699	43513699	G	A	SNP	TTC17	ENST00000039989	human	ensembl	74_37	+1	known	missense	c.3280	p.V1094I	1.000	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC17	HGNC	ENSG00000052841				133	0	0	92	34	26.9841
OR52B4	0	genome.wustl.edu	37	11	4389392	4389392	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	4389392	4389392	C	T	SNP	OR52B4	ENST00000408920	human	ensembl	74_37	-1	known	missense	c.134	p.S45N	0.003	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52B4	HGNC	ENSG00000221996				47	0	0	35	5	12.5
ACCS	0	genome.wustl.edu	37	11	44099449	44099449	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	44099449	44099449	G	A	SNP	ACCS	ENST00000263776	human	ensembl	74_37	+1	known	missense	c.709	p.A237T	0.993	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	-	no_errors	ACCS	HGNC	ENSG00000110455				28	0	0	28	6	17.6471
MAPK8IP1	0	genome.wustl.edu	37	11	45925641	45925641	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	45925641	45925641	G	A	SNP	MAPK8IP1	ENST00000241014	human	ensembl	74_37	+1	known	missense	c.1595	p.R532H	1.000	pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_PTB/PI_dom,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,smart_PTB/PI_dom,pfscan_PTB/PI_dom,pfscan_SH3_domain	-	no_errors	MAPK8IP1	HGNC	ENSG00000121653				65	0	0	39	5	11.3636
PEX16	0	genome.wustl.edu	37	11	45931824	45931824	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	45931824	45931824	T	C	SNP	PEX16	ENST00000378750	human	ensembl	74_37	-1	known	missense	c.992	p.Y331C	1.000	NULL	pfam_Pex16	-	no_errors	PEX16	HGNC	ENSG00000121680				44	0	0	34	7	17.0732
GYLTL1B	0	genome.wustl.edu	37	11	45949545	45949545	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	45949545	45949545	G	A	SNP	GYLTL1B	ENST00000325468	human	ensembl	74_37	+1	known	missense	c.1679	p.R560H	0.993	NULL	pfam_Glyco_trans_8	-	no_errors	GYLTL1B	HGNC	ENSG00000165905				33	0	0	33	3	8.33333
OR52I2	0	genome.wustl.edu	37	11	4608901	4608901	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	4608901	4608901	G	A	SNP	OR52I2	ENST00000312614	human	ensembl	74_37	+1	known	missense	c.859	p.A287T	0.014	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52I2	HGNC	ENSG00000226288				137	1	0.724638	82	30	26.7857
CHRM4	0	genome.wustl.edu	37	11	46408103	46408103	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	46408103	46408103	G	A	SNP	CHRM4	ENST00000433765	human	ensembl	74_37	-1	known	missense	c.5	p.A2V	1.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Musac_Ach_rcpt,prints_GPCR_Rhodpsn,prints_Musac_Ach_M4_rcpt	-	no_errors	CHRM4	HGNC	ENSG00000180720				74	0	0	61	18	22.7848
AMBRA1	0	genome.wustl.edu	37	11	46419227	46419227	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	46419227	46419227	G	A	SNP	AMBRA1	ENST00000458649	human	ensembl	74_37	-1	known	nonsense	c.3670	p.R1224*	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	AMBRA1	HGNC	ENSG00000110497				35	0	0	12	11	47.8261
HARBI1	0	genome.wustl.edu	37	11	46637365	46637365	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	46637365	46637365	C	T	SNP	HARBI1	ENST00000326737	human	ensembl	74_37	-1	known	missense	c.423	p.M141I	1.000	pfam_Harbinger_derived_prot_plant	pfam_Harbinger_derived_prot_plant	-	no_errors	HARBI1	HGNC	ENSG00000180423				303	0	0	209	63	23.1618
OR51E1	0	genome.wustl.edu	37	11	4674699	4674699	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	4674699	4674699	G	A	SNP	OR51E1	ENST00000396952	human	ensembl	74_37	+1	known	missense	c.943	p.A315T	0.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51E1	HGNC	ENSG00000180785				89	0	0	57	26	31.3253
CKAP5	0	genome.wustl.edu	37	11	46797803	46797803	+	Splice_Site	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	46797803	46797803	A	G	SNP	CKAP5	ENST00000415402	human	ensembl	74_37	-1	known	splice_site	c.2991+2	e23+2	1.000	-	-	-	no_errors	CKAP5	HGNC	ENSG00000175216				70	0	0	47	5	9.61538
LRP4	0	genome.wustl.edu	37	11	46880599	46880599	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	46880599	46880599	G	A	SNP	LRP4	ENST00000378623	human	ensembl	74_37	-1	known	nonsense	c.5653	p.R1885*	1.000	NULL	pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP4	HGNC	ENSG00000134569				57	0	0	34	10	22.7273
LRP4	0	genome.wustl.edu	37	11	46916311	46916311	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	46916311	46916311	G	A	SNP	LRP4	ENST00000378623	human	ensembl	74_37	-1	known	missense	c.1369	p.R457C	1.000	superfamily_Growth_fac_rcpt_N_dom	pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP4	HGNC	ENSG00000134569				76	0	0	43	12	21.8182
ARFGAP2	0	genome.wustl.edu	37	11	47188378	47188378	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	47188378	47188378	C	T	SNP	ARFGAP2	ENST00000524782	human	ensembl	74_37	-1	known	missense	c.1265	p.R422H	0.849	NULL	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ARFGAP2	HGNC	ENSG00000149182				188	0	0	137	44	24.3094
NR1H3	0	genome.wustl.edu	37	11	47282972	47282972	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	47282972	47282972	G	A	SNP	NR1H3	ENST00000441012	human	ensembl	74_37	+1	known	missense	c.680	p.R227H	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Liver_X_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_ThyrH_rcpt,prints_Ecdystd_rcpt	-	no_errors	NR1H3	HGNC	ENSG00000025434				71	0	0	39	23	37.0968
MADD	0	genome.wustl.edu	37	11	47306937	47306937	+	RNA	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	47306937	47306937	A	G	SNP	MADD	ENST00000524686	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.154	-	-	-	no_errors	MADD	HGNC	ENSG00000110514				127	0	0	82	25	23.3645
MYBPC3	0	genome.wustl.edu	37	11	47367812	47367812	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	47367812	47367812	G	A	SNP	MYBPC3	ENST00000399249	human	ensembl	74_37	-1	known	missense	c.1036	p.R346C	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYBPC3	HGNC	ENSG00000134571				42	0	0	19	5	20.8333
PTPRJ	0	genome.wustl.edu	37	11	48145282	48145282	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	48145282	48145282	G	A	SNP	PTPRJ	ENST00000418331	human	ensembl	74_37	+1	known	missense	c.734	p.S245N	0.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRJ	HGNC	ENSG00000149177				81	0	0	41	20	32.7869
LOC440040	0	genome.wustl.edu	37	11	49598046	49598046	+	RNA	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	49598046	49598046	C	A	SNP	LOC440040	ENST00000527477	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.995	-	-	-	no_errors	RP11-707M1.1	Clone_based_vega_gene	ENSG00000205035				29	0	0	18	9	33.3333
OR51A4	0	genome.wustl.edu	37	11	4967774	4967774	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	4967774	4967774	A	G	SNP	OR51A4	ENST00000380373	human	ensembl	74_37	-1	known	missense	c.557	p.V186A	0.012	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51A4	HGNC	ENSG00000205497				161	0	0	108	32	22.8571
OR51B6	0	genome.wustl.edu	37	11	5373588	5373588	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	5373588	5373588	T	C	SNP	OR51B6	ENST00000380219	human	ensembl	74_37	+1	known	missense	c.851	p.F284S	0.053	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	-	no_errors	OR51B6	HGNC	ENSG00000176239				115	0	0	82	28	25.4545
OR51Q1	0	genome.wustl.edu	37	11	5444163	5444163	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	5444163	5444163	T	A	SNP	OR51Q1	ENST00000300778	human	ensembl	74_37	+1	known	missense	c.733	p.S245T	0.980	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51Q1	HGNC	ENSG00000167360				117	0	0	76	5	6.17284
TRIM48	0	genome.wustl.edu	37	11	55035844	55035844	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	55035844	55035844	T	C	SNP	TRIM48	ENST00000417545	human	ensembl	74_37	+1	known	missense	c.574	p.Y192H	0.183	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM48	HGNC	ENSG00000150244				107	0	0	84	9	9.67742
OR4A16	0	genome.wustl.edu	37	11	55110982	55110982	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	55110982	55110982	A	C	SNP	OR4A16	ENST00000314721	human	ensembl	74_37	+1	known	missense	c.306	p.E102D	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4A16	HGNC	ENSG00000181961				170	0	0	114	53	31.7365
OR4A15	0	genome.wustl.edu	37	11	55136066	55136066	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	55136066	55136066	C	T	SNP	OR4A15	ENST00000314706	human	ensembl	74_37	+1	known	missense	c.707	p.A236V	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4A15	HGNC	ENSG00000181958				108	0	0	89	7	7.29167
OR4C16	0	genome.wustl.edu	37	11	55339888	55339888	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	55339888	55339888	C	T	SNP	OR4C16	ENST00000314634	human	ensembl	74_37	+1	known	silent	c.285	p.C95	0.997	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4C16	HGNC	ENSG00000181935				233	0	0	161	43	21.0784
OR4C11	0	genome.wustl.edu	37	11	55371828	55371828	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	55371828	55371828	G	A	SNP	OR4C11	ENST00000302231	human	ensembl	74_37	-1	known	missense	c.22	p.P8S	0.021	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4C11	HGNC	ENSG00000172188				110	0	0	64	25	28.0899
OR52H1	0	genome.wustl.edu	37	11	5566215	5566215	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	5566215	5566215	C	T	SNP	OR52H1	ENST00000322653	human	ensembl	74_37	-1	known	missense	c.539	p.R180H	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52H1	HGNC	ENSG00000181616				64	0	0	54	6	10
OR10AG1	0	genome.wustl.edu	37	11	55735774	55735774	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	55735774	55735774	T	G	SNP	OR10AG1	ENST00000312345	human	ensembl	74_37	-1	known	missense	c.166	p.N56H	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10AG1	HGNC	ENSG00000174970				121	0	0	80	6	6.97674
OR10AG1	0	genome.wustl.edu	37	11	55735781	55735781	+	Silent	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	55735781	55735781	A	G	SNP	OR10AG1	ENST00000312345	human	ensembl	74_37	-1	known	silent	c.159	p.F53	0.945	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10AG1	HGNC	ENSG00000174970				120	0	0	77	6	7.22892
OR5F1	0	genome.wustl.edu	37	11	55761731	55761731	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	55761731	55761731	G	A	SNP	OR5F1	ENST00000278409	human	ensembl	74_37	-1	known	missense	c.371	p.A124V	0.987	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5F1	HGNC	ENSG00000149133				97	0	0	60	19	24.0506
OR8H2	0	genome.wustl.edu	37	11	55872941	55872941	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	55872941	55872941	C	T	SNP	OR8H2	ENST00000313503	human	ensembl	74_37	+1	known	silent	c.423	p.C141	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8H2	HGNC	ENSG00000181767				226	0	0	142	48	25.2632
ENSG00000254815	0	genome.wustl.edu	37	11	558819	558819	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	558819	558819	G	A	SNP	ENSG00000254815	ENST00000527620	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-496I9.1	Clone_based_vega_gene	ENSG00000254815				11	0	0	6	4	40
OR8H3	0	genome.wustl.edu	37	11	55889929	55889929	+	Silent	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	55889929	55889929	T	C	SNP	OR8H3	ENST00000313472	human	ensembl	74_37	+1	known	silent	c.81	p.A27	0.000	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8H3	HGNC	ENSG00000181761				189	0	0	138	35	20.2312
OR8K1	0	genome.wustl.edu	37	11	56114241	56114241	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	56114241	56114241	G	A	SNP	OR8K1	ENST00000279783	human	ensembl	74_37	+1	known	missense	c.727	p.A243T	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8K1	HGNC	ENSG00000150261				57	0	0	40	10	20
OR8U1	0	genome.wustl.edu	37	11	56143919	56143919	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	56143919	56143919	G	A	SNP	OR8U1	ENST00000302270	human	ensembl	74_37	+1	known	missense	c.820	p.A274T	0.156	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8U1	HGNC	ENSG00000172199				261	0	0	192	17	8.13397
OR5M8	0	genome.wustl.edu	37	11	56258342	56258342	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	56258342	56258342	C	T	SNP	OR5M8	ENST00000327216	human	ensembl	74_37	-1	known	missense	c.505	p.G169S	0.473	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5M8	HGNC	ENSG00000181371				108	0	0	67	28	29.4737
TNKS1BP1	0	genome.wustl.edu	37	11	57076125	57076125	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	57076125	57076125	C	A	SNP	TNKS1BP1	ENST00000358252	human	ensembl	74_37	-1	known	nonsense	c.4060	p.E1354*	0.055	NULL	NULL	-	no_errors	TNKS1BP1	HGNC	ENSG00000149115				129	0	0	77	31	28.7037
SLC43A1	0	genome.wustl.edu	37	11	57252625	57252625	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	57252625	57252625	C	T	SNP	SLC43A1	ENST00000278426	human	ensembl	74_37	-1	known	missense	c.1624	p.A542T	0.000	NULL	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC43A1	HGNC	ENSG00000149150				38	0	0	24	5	17.2414
TRIM22	0	genome.wustl.edu	37	11	5730360	5730360	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	5730360	5730360	C	T	SNP	TRIM22	ENST00000379965	human	ensembl	74_37	+1	known	missense	c.979	p.R327C	0.000	superfamily_ConA-like_lec_gl_sf,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM22	HGNC	ENSG00000132274				133	0	0	87	18	17.1429
CLP1	0	genome.wustl.edu	37	11	57428850	57428850	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	57428850	57428850	G	A	SNP	CLP1	ENST00000525602	human	ensembl	74_37	+1	known	missense	c.1220	p.R407H	1.000	pfam_Pre-mRNA_cleavage_cplxII_Clp1	pfam_Pre-mRNA_cleavage_cplxII_Clp1,superfamily_P-loop_NTPase	-	no_errors	CLP1	HGNC	ENSG00000172409				125	0	0	62	6	8.82353
OR10V1	0	genome.wustl.edu	37	11	59480487	59480487	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	59480487	59480487	C	T	SNP	OR10V1	ENST00000307552	human	ensembl	74_37	-1	known	missense	c.832	p.A278T	0.997	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10V1	HGNC	ENSG00000172289				108	0	0	66	27	29.0323
GIF	0	genome.wustl.edu	37	11	59611434	59611434	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	59611434	59611434	C	T	SNP	GIF	ENST00000257248	human	ensembl	74_37	-1	known	silent	c.174	p.L58	1.000	pfam_Cbl-bd_transpt_euk	pfam_Cbl-bd_transpt_euk	-	no_errors	GIF	HGNC	ENSG00000134812				59	0	0	50	8	13.7931
OR56A3	0	genome.wustl.edu	37	11	5969245	5969245	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	5969245	5969245	C	T	SNP	OR56A3	ENST00000329564	human	ensembl	74_37	+1	known	silent	c.669	p.T223	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR56A3	HGNC	ENSG00000184478				182	0	0	158	9	5.38922
MS4A4E	0	genome.wustl.edu	37	11	59992560	59992560	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	59992560	59992560	G	A	SNP	MS4A4E	ENST00000427611	human	ensembl	74_37	-1	known	missense	c.112	p.R38W	0.937	NULL	NULL	-	no_errors	MS4A4E	HGNC	ENSG00000214787				30	0	0	16	3	15.7895
MS4A4A	0	genome.wustl.edu	37	11	60070111	60070111	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	60070111	60070111	C	T	SNP	MS4A4A	ENST00000337908	human	ensembl	74_37	+1	known	missense	c.467	p.A156V	0.000	pfam_CD20-like	pfam_CD20-like	-	no_errors	MS4A4A	HGNC	ENSG00000110079				64	0	0	50	16	24.2424
PRPF19	0	genome.wustl.edu	37	11	60666093	60666093	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	60666093	60666093	T	C	SNP	PRPF19	ENST00000227524	human	ensembl	74_37	-1	known	missense	c.1060	p.T354A	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_Ricin_B_lectin,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Pre-mRNA_splic_Prp19,pfam_Ubox_domain,superfamily_WD40_repeat_dom,smart_Ubox_domain,smart_WD40_repeat,pfscan_Ricin_B_lectin,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PRPF19	HGNC	ENSG00000110107				58	0	0	43	12	21.8182
PRPF19	0	genome.wustl.edu	37	11	60670217	60670217	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	60670217	60670217	C	T	SNP	PRPF19	ENST00000227524	human	ensembl	74_37	-1	known	missense	c.383	p.R128Q	1.000	pfam_Pre-mRNA_splic_Prp19	pfam_WD40_repeat,pfam_Pre-mRNA_splic_Prp19,pfam_Ubox_domain,superfamily_WD40_repeat_dom,smart_Ubox_domain,smart_WD40_repeat,pfscan_Ricin_B_lectin,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PRPF19	HGNC	ENSG00000110107				22	0	0	12	7	36.8421
CD6	0	genome.wustl.edu	37	11	60785861	60785861	+	Silent	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	60785861	60785861	T	C	SNP	CD6	ENST00000313421	human	ensembl	74_37	+1	known	silent	c.1938	p.C646	0.695	NULL	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_SRCR	-	no_errors	CD6	HGNC	ENSG00000013725				11	0	0	7	4	36.3636
CD5	0	genome.wustl.edu	37	11	60889151	60889151	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	60889151	60889151	C	T	SNP	CD5	ENST00000347785	human	ensembl	74_37	+1	known	missense	c.874	p.R292C	0.998	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_Tcell_CD5	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_Tcell_CD5,prints_SRCR	-	no_errors	CD5	HGNC	ENSG00000110448				24	0	0	12	5	29.4118
TMEM216	0	genome.wustl.edu	37	11	61165323	61165323	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	61165323	61165323	G	A	SNP	TMEM216	ENST00000334888	human	ensembl	74_37	+1	known	missense	c.307	p.A103T	1.000	pfam_Uncharacterised_TM-17	pfam_Uncharacterised_TM-17	-	no_errors	TMEM216	HGNC	ENSG00000187049				130	0	0	121	8	6.20155
SYT7	0	genome.wustl.edu	37	11	61290689	61290689	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	61290689	61290689	G	A	SNP	SYT7	ENST00000263846	human	ensembl	74_37	-1	known	missense	c.965	p.T322M	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT7	HGNC	ENSG00000011347				71	0	0	62	26	29.5455
DAGLA	0	genome.wustl.edu	37	11	61488161	61488161	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	61488161	61488161	C	T	SNP	DAGLA	ENST00000257215	human	ensembl	74_37	+1	known	silent	c.106	p.L36	1.000	NULL	pfam_Lipase_3	-	no_errors	DAGLA	HGNC	ENSG00000134780				47	0	0	24	12	33.3333
FADS2	0	genome.wustl.edu	37	11	61615676	61615676	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	61615676	61615676	G	A	SNP	FADS2	ENST00000278840	human	ensembl	74_37	+1	known	missense	c.664	p.A222T	1.000	pfam_Fatty_acid_desaturase-1,pirsf_Fatty_acid/sphinglp_desaturase	pfam_Fatty_acid_desaturase-1,pfam_Cyt_B5-like_heme/steroid-bd,superfamily_Cyt_B5-like_heme/steroid-bd,pirsf_Fatty_acid/sphinglp_desaturase,pfscan_Cyt_B5-like_heme/steroid-bd	-	no_errors	FADS2	HGNC	ENSG00000134824				99	0	0	66	17	20.4819
OR52W1	0	genome.wustl.edu	37	11	6220850	6220850	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	6220850	6220850	C	T	SNP	OR52W1	ENST00000311352	human	ensembl	74_37	+1	known	missense	c.397	p.R133C	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	-	no_errors	OR52W1	HGNC	ENSG00000175485				45	0	0	33	6	15.3846
OR52W1	0	genome.wustl.edu	37	11	6221355	6221355	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	6221355	6221355	G	A	SNP	OR52W1	ENST00000311352	human	ensembl	74_37	+1	known	missense	c.902	p.R301H	0.749	prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	-	no_errors	OR52W1	HGNC	ENSG00000175485				215	1	0.462963	152	53	25.8537
AHNAK	0	genome.wustl.edu	37	11	62288822	62288822	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	62288822	62288822	G	A	SNP	AHNAK	ENST00000378024	human	ensembl	74_37	-1	known	missense	c.13067	p.A4356V	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942				156	0	0	142	13	8.3871
AHNAK	0	genome.wustl.edu	37	11	62298466	62298466	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	62298466	62298466	G	A	SNP	AHNAK	ENST00000378024	human	ensembl	74_37	-1	known	silent	c.3423	p.G1141	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942				144	0	0	107	34	24.1135
EEF1G	0	genome.wustl.edu	37	11	62338497	62338497	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	62338497	62338497	G	A	SNP	EEF1G	ENST00000378019	human	ensembl	74_37	-1	known	silent	c.612	p.G204	0.181	pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like	pfam_Transl_elong_EF1_G_con,pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Transl_elong_EF1_G_con,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,pfscan_Transl_elong_EF1_G_con	-	no_errors	EEF1G	HGNC	ENSG00000254772				132	1	0.75188	100	30	23.0769
GANAB	0	genome.wustl.edu	37	11	62400959	62400959	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	62400959	62400959	G	A	SNP	GANAB	ENST00000346178	human	ensembl	74_37	-1	known	silent	c.654	p.G218	0.997	superfamily_Gal_mutarotase_SF_dom	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom	-	no_errors	GANAB	HGNC	ENSG00000089597				56	0	0	35	12	25.5319
HNRNPUL2	0	genome.wustl.edu	37	11	62483025	62483025	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	62483025	62483025	G	A	SNP	HNRNPUL2	ENST00000301785	human	ensembl	74_37	-1	known	nonsense	c.2110	p.R704*	0.882	NULL	pfam_SPRY_rcpt,pfam_SAP_dom,pfam_Zeta_toxin_domain,pfam_Chromatin_KTI12,superfamily_ConA-like_lec_gl_sf,superfamily_P-loop_NTPase,smart_SAP_dom,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_SAP_dom	-	no_errors	HNRNPUL2	HGNC	ENSG00000214753				103	0	0	94	5	5.05051
WDR74	0	genome.wustl.edu	37	11	62601368	62601368	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	62601368	62601368	G	A	SNP	WDR74	ENST00000278856	human	ensembl	74_37	-1	known	missense	c.817	p.R273C	0.983	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR74	HGNC	ENSG00000133316				47	0	0	36	16	30.7692
CNGA4	0	genome.wustl.edu	37	11	6261008	6261008	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	6261008	6261008	C	T	SNP	CNGA4	ENST00000379936	human	ensembl	74_37	+1	known	missense	c.259	p.R87C	0.983	pfam_Ion_trans_dom	pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA4	HGNC	ENSG00000132259				38	0	0	27	10	27.027
CNGA4	0	genome.wustl.edu	37	11	6261854	6261854	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	6261854	6261854	C	T	SNP	CNGA4	ENST00000379936	human	ensembl	74_37	+1	known	missense	c.830	p.A277V	0.977	superfamily_cNMP-bd-like	pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA4	HGNC	ENSG00000132259				125	0	0	69	5	6.75676
CNGA4	0	genome.wustl.edu	37	11	6262731	6262731	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	6262731	6262731	C	T	SNP	CNGA4	ENST00000379936	human	ensembl	74_37	+1	known	silent	c.988	p.L330	0.998	superfamily_cNMP-bd-like	pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA4	HGNC	ENSG00000132259				118	0	0	79	34	30.0885
SLC22A8	0	genome.wustl.edu	37	11	62766535	62766535	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	62766535	62766535	G	A	SNP	SLC22A8	ENST00000336232	human	ensembl	74_37	-1	known	missense	c.619	p.R207W	0.997	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A8	HGNC	ENSG00000149452				43	0	0	41	5	10.8696
CCKBR	0	genome.wustl.edu	37	11	6291549	6291549	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	6291549	6291549	C	T	SNP	CCKBR	ENST00000525462	human	ensembl	74_37	+1	known	missense	c.635	p.A212V	0.020	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Gastrin_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Gastrin_rcpt,prints_Cholcskin_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	CCKBR	HGNC	ENSG00000110148				72	0	0	44	16	26.6667
SLC22A10	0	genome.wustl.edu	37	11	63057764	63057764	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	63057764	63057764	G	T	SNP	SLC22A10	ENST00000332793	human	ensembl	74_37	+1	known	missense	c.127	p.A43S	0.473	NULL	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A10	HGNC	ENSG00000184999				69	0	0	52	17	24.6377
RCOR2	0	genome.wustl.edu	37	11	63682282	63682282	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	63682282	63682282	C	T	SNP	RCOR2	ENST00000301459	human	ensembl	74_37	-1	known	missense	c.325	p.G109S	1.000	pfscan_ELM2_dom	pfam_SANT/Myb,pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	RCOR2	HGNC	ENSG00000167771				181	0	0	96	47	32.8671
PLCB3	0	genome.wustl.edu	37	11	64023268	64023268	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	64023268	64023268	G	A	SNP	PLCB3	ENST00000279230	human	ensembl	74_37	+1	known	missense	c.673	p.D225N	0.999	pirsf_PLC-beta,pfam_PLipase_C_EF-hand-like	pirsf_PLC-beta,pfam_PLC-beta_C,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,pfam_PLC-beta_CS,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,prints_Pinositol_PLipase_C,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB3	HGNC	ENSG00000149782				116	0	0	66	18	21.4286
SMPD1	0	genome.wustl.edu	37	11	6413036	6413036	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	6413036	6413036	C	T	SNP	SMPD1	ENST00000342245	human	ensembl	74_37	+1	known	silent	c.741	p.G247	0.805	pfam_PEstase_dom,pirsf_Sphingomy_PDE	pfam_PEstase_dom,superfamily_Saposin-like,smart_SaposinB,pirsf_Sphingomy_PDE,pfscan_SaposinB	-	no_errors	SMPD1	HGNC	ENSG00000166311				42	0	0	36	7	16.2791
NRXN2	0	genome.wustl.edu	37	11	64434955	64434955	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	64434955	64434955	C	T	SNP	NRXN2	ENST00000265459	human	ensembl	74_37	-1	known	missense	c.1565	p.R522H	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN2	HGNC	ENSG00000110076				41	0	0	26	9	25.7143
PYGM	0	genome.wustl.edu	37	11	64522963	64522963	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	64522963	64522963	C	T	SNP	PYGM	ENST00000164139	human	ensembl	74_37	-1	known	missense	c.728	p.R243H	1.000	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	-	no_errors	PYGM	HGNC	ENSG00000068976				58	0	0	47	12	20.339
HPX	0	genome.wustl.edu	37	11	6452540	6452540	+	Silent	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	6452540	6452540	A	G	SNP	HPX	ENST00000265983	human	ensembl	74_37	-1	known	silent	c.1290	p.G430	0.951	superfamily_Hemopexin-like_dom,pirsf_Hemopexin_chordata	pfam_Hemopexin-like_repeat,superfamily_Hemopexin-like_dom,smart_Hemopexin-like_repeat,pirsf_Hemopexin_chordata	-	no_errors	HPX	HGNC	ENSG00000110169				81	0	0	82	7	7.86517
TRIM3	0	genome.wustl.edu	37	11	6472626	6472626	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	6472626	6472626	G	A	SNP	TRIM3	ENST00000345851	human	ensembl	74_37	-1	known	nonsense	c.1576	p.R526*	1.000	pfscan_NHL_repeat_subgr	pfam_NHL_repeat,pfam_Filamin/ABP280_repeat-like,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_Ig_E-set,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Filamin,pfscan_Filamin/ABP280_repeat-like,pfscan_NHL_repeat_subgr,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM3	HGNC	ENSG00000110171				82	0	0	44	6	12
SNX15	0	genome.wustl.edu	37	11	64802341	64802341	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	64802341	64802341	C	T	SNP	SNX15	ENST00000377244	human	ensembl	74_37	+1	known	silent	c.279	p.I93	0.010	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_MIT,pfam_Phox,superfamily_Phox,smart_Phox,smart_MIT,pfscan_Phox	-	no_errors	SNX15	HGNC	ENSG00000110025				34	0	0	41	9	18
VPS51	0	genome.wustl.edu	37	11	64876893	64876893	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	64876893	64876893	C	T	SNP	VPS51	ENST00000279281	human	ensembl	74_37	+1	known	missense	c.1585	p.R529C	1.000	NULL	pfam_COG8,pfam_Vacuolar_sorting-assoc_54,pfam_COG_su2_N,pfam_RZZ-complex_Zw10,superfamily_Cullin_repeat-like_dom	-	no_errors	VPS51	HGNC	ENSG00000149823				52	0	0	21	18	46.1538
CAPN1	0	genome.wustl.edu	37	11	64977874	64977874	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	64977874	64977874	C	T	SNP	CAPN1	ENST00000279247	human	ensembl	74_37	+1	known	silent	c.2010	p.V670	0.982	NULL	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,pfscan_EF_hand_dom,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN1	HGNC	ENSG00000014216				37	0	0	13	4	23.5294
MALAT1	0	genome.wustl.edu	37	11	65273657	65273657	+	RNA	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	65273657	65273657	A	G	SNP	MALAT1	ENST00000534336	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MALAT1	HGNC	ENSG00000251562				54	0	0	29	16	35.5556
MUS81	0	genome.wustl.edu	37	11	65633355	65633355	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	65633355	65633355	C	T	SNP	MUS81	ENST00000308110	human	ensembl	74_37	+1	known	missense	c.1579	p.R527C	0.867	NULL	pfam_ERCC4_domain,superfamily_Restrct_endonuc-II-like,superfamily_DNA_pol_b-like_N,smart_ERCC4_domain	-	no_errors	MUS81	HGNC	ENSG00000172732				85	0	0	57	7	10.9375
SART1	0	genome.wustl.edu	37	11	65743960	65743960	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	65743960	65743960	C	T	SNP	SART1	ENST00000312397	human	ensembl	74_37	+1	known	missense	c.1667	p.T556M	1.000	pfam_SART_1	pfam_SART_1	-	no_errors	SART1	HGNC	ENSG00000175467				35	0	0	18	5	21.7391
KLC2	0	genome.wustl.edu	37	11	66033585	66033585	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	66033585	66033585	C	T	SNP	KLC2	ENST00000316924	human	ensembl	74_37	+1	known	missense	c.1624	p.R542C	1.000	NULL	pfam_Rabaptin_Rab5-bd_dom,pfam_TPR_1,smart_TPR_repeat,prints_Kinesin_light,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	KLC2	HGNC	ENSG00000174996				27	0	0	17	4	19.0476
TMEM151A	0	genome.wustl.edu	37	11	66061810	66061810	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	66061810	66061810	G	A	SNP	TMEM151A	ENST00000327259	human	ensembl	74_37	+1	known	silent	c.93	p.Q31	1.000	NULL	NULL	-	no_errors	TMEM151A	HGNC	ENSG00000179292				38	0	0	33	13	28.2609
TMEM151A	0	genome.wustl.edu	37	11	66061905	66061905	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	66061905	66061905	G	A	SNP	TMEM151A	ENST00000327259	human	ensembl	74_37	+1	known	missense	c.188	p.R63H	1.000	NULL	NULL	-	no_errors	TMEM151A	HGNC	ENSG00000179292				21	0	0	9	4	30.7692
CD248	0	genome.wustl.edu	37	11	66083274	66083274	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	66083274	66083274	C	T	SNP	CD248	ENST00000311330	human	ensembl	74_37	-1	known	missense	c.1225	p.A409T	0.500	NULL	pfam_C-type_lectin,pfam_EGF-like_Ca-bd_dom,superfamily_C-type_lectin_fold,smart_C-type_lectin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_C-type_lectin	-	no_errors	CD248	HGNC	ENSG00000174807				73	0	0	62	5	7.46269
SLC29A2	0	genome.wustl.edu	37	11	66130984	66130984	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	66130984	66130984	C	T	SNP	SLC29A2	ENST00000357440	human	ensembl	74_37	-1	known	missense	c.1294	p.A432T	0.498	pfam_Eqnu_transpt,superfamily_MFS_dom_general_subst_transpt,prints_Eqnu_transpt,tigrfam_Eqnu_transpt	pfam_Eqnu_transpt,superfamily_MFS_dom_general_subst_transpt,prints_Eqnu_transpt,tigrfam_Eqnu_transpt	-	no_errors	SLC29A2	HGNC	ENSG00000174669				17	0	0	13	4	23.5294
PELI3	0	genome.wustl.edu	37	11	66235677	66235677	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	66235677	66235677	C	T	SNP	PELI3	ENST00000320740	human	ensembl	74_37	+1	known	silent	c.78	p.C26	0.001	NULL	pfam_Pellino_fam	-	no_errors	PELI3	HGNC	ENSG00000174516				66	0	0	29	11	27.5
DPP3	0	genome.wustl.edu	37	11	66262922	66262922	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	66262922	66262922	C	T	SNP	DPP3	ENST00000360510	human	ensembl	74_37	+1	known	silent	c.1539	p.S513	0.964	pirsf_Dipeptidyl-peptase3	pirsf_Dipeptidyl-peptase3	-	no_errors	DPP3	HGNC	ENSG00000254986				23	0	0	10	4	28.5714
RBM4	0	genome.wustl.edu	37	11	66411175	66411175	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	66411175	66411175	A	G	SNP	RBM4	ENST00000310092	human	ensembl	74_37	+1	known	missense	c.667	p.K223E	1.000	NULL	pfam_RRM_dom,pfam_Znf_CCHC,smart_RRM_dom,smart_Znf_CCHC,pfscan_Znf_CCHC,pfscan_RRM_dom	-	no_errors	RBM4	HGNC	ENSG00000173933				55	0	0	35	9	20.4545
RBM4B	0	genome.wustl.edu	37	11	66444123	66444123	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	66444123	66444123	G	A	SNP	RBM4B	ENST00000531036	human	ensembl	74_37	-1	putative	missense	c.428	p.A143V	0.404	smart_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM4B	HGNC	ENSG00000173914				92	0	0	68	8	10.5263
SPTBN2	0	genome.wustl.edu	37	11	66456223	66456223	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	66456223	66456223	C	T	SNP	SPTBN2	ENST00000309996	human	ensembl	74_37	-1	known	silent	c.6132	p.T2044	0.420	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN2	HGNC	ENSG00000173898				59	0	0	47	7	12.963
SPTBN2	0	genome.wustl.edu	37	11	66461764	66461764	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	66461764	66461764	G	A	SNP	SPTBN2	ENST00000309996	human	ensembl	74_37	-1	known	missense	c.4349	p.A1450V	1.000	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN2	HGNC	ENSG00000173898				40	0	0	21	7	25
SPTBN2	0	genome.wustl.edu	37	11	66475077	66475077	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	66475077	66475077	G	A	SNP	SPTBN2	ENST00000309996	human	ensembl	74_37	-1	known	silent	c.1563	p.A521	0.039	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN2	HGNC	ENSG00000173898				17	0	0	8	6	42.8571
SPTBN2	0	genome.wustl.edu	37	11	66475138	66475138	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	66475138	66475138	C	T	SNP	SPTBN2	ENST00000309996	human	ensembl	74_37	-1	known	missense	c.1502	p.R501H	1.000	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN2	HGNC	ENSG00000173898				30	0	0	20	6	23.0769
DCHS1	0	genome.wustl.edu	37	11	6654194	6654194	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	6654194	6654194	C	T	SNP	DCHS1	ENST00000299441	human	ensembl	74_37	-1	known	missense	c.2549	p.R850H	0.977	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS1	HGNC	ENSG00000166341				71	0	0	36	10	21.7391
DCHS1	0	genome.wustl.edu	37	11	6661150	6661150	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	6661150	6661150	G	A	SNP	DCHS1	ENST00000299441	human	ensembl	74_37	-1	known	silent	c.1695	p.S565	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS1	HGNC	ENSG00000166341				58	0	0	47	5	9.61538
LRFN4	0	genome.wustl.edu	37	11	66626561	66626561	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	66626561	66626561	A	G	SNP	LRFN4	ENST00000309602	human	ensembl	74_37	+1	known	missense	c.1346	p.Y449C	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRFN4	HGNC	ENSG00000173621				67	0	0	31	11	26.1905
ADRBK1	0	genome.wustl.edu	37	11	67047125	67047125	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	67047125	67047125	T	C	SNP	ADRBK1	ENST00000308595	human	ensembl	74_37	+1	known	missense	c.395	p.V132A	1.000	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RGS_dom,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Regulat_G_prot_signal_superfam,pfscan_Prot_kinase_dom,prints_GPCR_kinase	-	no_errors	ADRBK1	HGNC	ENSG00000173020				67	0	0	49	5	9.25926
ADRBK1	0	genome.wustl.edu	37	11	67052656	67052656	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	67052656	67052656	C	T	SNP	ADRBK1	ENST00000308595	human	ensembl	74_37	+1	known	silent	c.1902	p.C634	0.977	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RGS_dom,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Regulat_G_prot_signal_superfam,pfscan_Prot_kinase_dom,prints_GPCR_kinase	-	no_errors	ADRBK1	HGNC	ENSG00000173020				157	0	0	96	8	7.69231
SSH3	0	genome.wustl.edu	37	11	67077278	67077278	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	67077278	67077278	C	T	SNP	SSH3	ENST00000308127	human	ensembl	74_37	+1	known	silent	c.1248	p.G416	0.029	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,pfam_DEK_C,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	SSH3	HGNC	ENSG00000172830				44	0	0	29	13	30.9524
GSTP1	0	genome.wustl.edu	37	11	67352167	67352167	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	67352167	67352167	G	A	SNP	GSTP1	ENST00000398606	human	ensembl	74_37	+1	known	silent	c.156	p.Q52	1.000	pfam_Glutathione_S-Trfase_N,superfamily_Thioredoxin-like_fold,prints_GST_pi	pfam_GST_C,pfam_Glutathione_S-Trfase_N,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_GST_pi	-	no_errors	GSTP1	HGNC	ENSG00000084207				135	0	0	87	16	15.534
ALDH3B2	0	genome.wustl.edu	37	11	67432886	67432886	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	67432886	67432886	G	A	SNP	ALDH3B2	ENST00000349015	human	ensembl	74_37	-1	known	silent	c.576	p.G192	0.000	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH3B2	HGNC	ENSG00000132746				73	0	0	46	4	8
TCIRG1	0	genome.wustl.edu	37	11	67816417	67816417	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	67816417	67816417	C	T	SNP	TCIRG1	ENST00000265686	human	ensembl	74_37	+1	known	silent	c.1626	p.G542	0.819	pfam_V-ATPase_116kDa_su	pfam_V-ATPase_116kDa_su	-	no_errors	TCIRG1	HGNC	ENSG00000110719				125	0	0	79	28	26.1682
SUV420H1	0	genome.wustl.edu	37	11	67957392	67957392	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	67957392	67957392	G	A	SNP	SUV420H1	ENST00000304363	human	ensembl	74_37	-1	known	missense	c.152	p.S51L	1.000	NULL	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	-	no_errors	SUV420H1	HGNC	ENSG00000110066				249	1	0.4	158	65	29.148
C11orf24	0	genome.wustl.edu	37	11	68029864	68029864	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	68029864	68029864	G	A	SNP	C11orf24	ENST00000304271	human	ensembl	74_37	-1	known	missense	c.599	p.A200V	0.000	NULL	NULL	-	no_errors	C11orf24	HGNC	ENSG00000171067				48	0	0	31	10	24.3902
OR10A5	0	genome.wustl.edu	37	11	6867086	6867086	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	6867086	6867086	G	T	SNP	OR10A5	ENST00000379831	human	ensembl	74_37	+1	known	missense	c.185	p.S62I	0.427	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10A5	HGNC	ENSG00000166363				212	1	0.469484	130	38	22.619
OR2D2	0	genome.wustl.edu	37	11	6913396	6913396	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	6913396	6913396	G	A	SNP	OR2D2	ENST00000299459	human	ensembl	74_37	-1	known	silent	c.336	p.C112	0.997	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Olfact_rcpt	-	no_errors	OR2D2	HGNC	ENSG00000166368				108	0	0	88	10	10.2041
OR2D3	0	genome.wustl.edu	37	11	6942872	6942872	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	6942872	6942872	G	A	SNP	OR2D3	ENST00000317834	human	ensembl	74_37	+1	known	missense	c.640	p.A214T	0.992	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2D3	HGNC	ENSG00000178358				56	0	0	41	12	22.6415
PPFIA1	0	genome.wustl.edu	37	11	70118424	70118424	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	70118424	70118424	G	A	SNP	PPFIA1	ENST00000253925	human	ensembl	74_37	+1	known	missense	c.146	p.R49H	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA1	HGNC	ENSG00000131626				125	0	0	68	33	32.6733
SHANK2	0	genome.wustl.edu	37	11	70332069	70332069	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	70332069	70332069	G	A	SNP	SHANK2	ENST00000338508	human	ensembl	74_37	-1	known	silent	c.4332	p.S1444	0.806	NULL	pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK2	HGNC	ENSG00000162105				87	0	0	63	18	22.2222
SHANK2	0	genome.wustl.edu	37	11	70333124	70333124	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	70333124	70333124	G	A	SNP	SHANK2	ENST00000338508	human	ensembl	74_37	-1	known	missense	c.3277	p.R1093W	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK2	HGNC	ENSG00000162105				27	0	0	18	6	25
RBMXL2	0	genome.wustl.edu	37	11	7111248	7111248	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	7111248	7111248	G	A	SNP	RBMXL2	ENST00000306904	human	ensembl	74_37	+1	known	silent	c.897	p.P299	1.000	NULL	pfam_RRM_dom,pfam_RBM1CTR,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBMXL2	HGNC	ENSG00000170748				16	0	0	9	3	25
DHCR7	0	genome.wustl.edu	37	11	71150017	71150017	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	71150017	71150017	C	T	SNP	DHCR7	ENST00000355527	human	ensembl	74_37	-1	known	missense	c.739	p.A247T	1.000	pfam_Ergosterol_biosynth_ERG4_ERG24	pfam_Ergosterol_biosynth_ERG4_ERG24	-	no_errors	DHCR7	HGNC	ENSG00000172893				70	0	0	34	13	27.6596
NUMA1	0	genome.wustl.edu	37	11	71725378	71725378	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	71725378	71725378	C	T	SNP	NUMA1	ENST00000393695	human	ensembl	74_37	-1	known	silent	c.3171	p.T1057	0.002	NULL	superfamily_Prefoldin	-	no_errors	NUMA1	HGNC	ENSG00000137497				102	0	0	51	22	30.137
NUMA1	0	genome.wustl.edu	37	11	71725779	71725779	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	71725779	71725779	G	A	SNP	NUMA1	ENST00000393695	human	ensembl	74_37	-1	known	missense	c.2770	p.R924C	0.992	NULL	superfamily_Prefoldin	-	no_errors	NUMA1	HGNC	ENSG00000137497				61	0	0	38	12	24
FOLR3	0	genome.wustl.edu	37	11	71850830	71850830	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	71850830	71850830	G	A	SNP	FOLR3	ENST00000456237	human	ensembl	74_37	+1	known	silent	c.819	p.A273	0.000	NULL	pfam_Folate_rcpt-like	-	no_errors	FOLR3	HGNC	ENSG00000110203				46	0	0	25	8	24.2424
INPPL1	0	genome.wustl.edu	37	11	71939260	71939260	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	71939260	71939260	G	A	SNP	INPPL1	ENST00000298229	human	ensembl	74_37	+1	known	missense	c.209	p.R70H	0.999	pfam_SH2,smart_SH2,pfscan_SH2	pfam_Endo/exonuclease/phosphatase,pfam_SH2,pfam_SAM_2,pfam_SAM_type1,superfamily_Endo/exonuclease/phosphatase,superfamily_SAM/pointed,smart_SH2,smart_IPPc,smart_SAM,pfscan_SAM,pfscan_SH2,prints_SH2	-	no_errors	INPPL1	HGNC	ENSG00000165458				95	0	0	40	23	36.5079
EPS8L2	0	genome.wustl.edu	37	11	722405	722405	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	722405	722405	T	C	SNP	EPS8L2	ENST00000318562	human	ensembl	74_37	+1	known	missense	c.1064	p.V355A	0.980	NULL	pfam_PTB,pfam_SH3_domain,pfam_PTB/PI_dom,pfam_SH3_2,superfamily_SH3_domain,superfamily_SAM/pointed,smart_PTB/PI_dom,smart_SH3_domain,pfscan_PTB/PI_dom,pfscan_SH3_domain	-	no_errors	EPS8L2	HGNC	ENSG00000177106				50	0	0	37	7	15.9091
PDE2A	0	genome.wustl.edu	37	11	72295250	72295250	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	72295250	72295250	C	T	SNP	PDE2A	ENST00000334456	human	ensembl	74_37	-1	known	missense	c.1645	p.A549T	1.000	smart_GAF	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE2A	HGNC	ENSG00000186642				20	0	0	14	5	26.3158
ARAP1	0	genome.wustl.edu	37	11	72420943	72420943	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	72420943	72420943	C	T	SNP	ARAP1	ENST00000393609	human	ensembl	74_37	-1	known	missense	c.1495	p.D499N	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_ArfGAP,pfam_SAM_type1,pfam_Ras-assoc,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP1	HGNC	ENSG00000186635				80	0	0	42	16	27.5862
P2RY2	0	genome.wustl.edu	37	11	72945327	72945327	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	72945327	72945327	C	T	SNP	P2RY2	ENST00000311131	human	ensembl	74_37	+1	known	silent	c.123	p.G41	0.641	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_P2Y2_rcpt,prints_GPCR_Rhodpsn,prints_P2Y4_rcpt	-	no_errors	P2RY2	HGNC	ENSG00000175591				103	0	0	50	21	29.5775
ARHGEF17	0	genome.wustl.edu	37	11	73070963	73070963	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	73070963	73070963	G	A	SNP	ARHGEF17	ENST00000263674	human	ensembl	74_37	+1	known	missense	c.4172	p.S1391N	1.000	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,superfamily_Vinculin/catenin,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF17	HGNC	ENSG00000110237				71	0	0	44	13	22.807
RAB6A	0	genome.wustl.edu	37	11	73429910	73429910	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	73429910	73429910	G	A	SNP	RAB6A	ENST00000310653	human	ensembl	74_37	-1	known	missense	c.209	p.A70V	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,pfam_SRP_receptor_beta_su,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,pfam_SRP_receptor_beta_su,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB6A	HGNC	ENSG00000175582				134	0	0	89	35	28.2258
XRRA1	0	genome.wustl.edu	37	11	74563096	74563096	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	74563096	74563096	G	A	SNP	XRRA1	ENST00000340360	human	ensembl	74_37	-1	known	missense	c.1178	p.A393V	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	XRRA1	HGNC	ENSG00000166435				136	0	0	75	33	30.5556
OLFML1	0	genome.wustl.edu	37	11	7509587	7509587	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	7509587	7509587	C	T	SNP	OLFML1	ENST00000329293	human	ensembl	74_37	+1	known	missense	c.359	p.A120V	0.675	NULL	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFML1	HGNC	ENSG00000183801				88	0	0	83	5	5.68182
UVRAG	0	genome.wustl.edu	37	11	75851844	75851844	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	75851844	75851844	T	A	SNP	UVRAG	ENST00000356136	human	ensembl	74_37	+1	known	missense	c.1487	p.I496N	0.948	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom	-	no_errors	UVRAG	HGNC	ENSG00000198382				116	0	0	80	28	25.9259
UVRAG	0	genome.wustl.edu	37	11	75851877	75851877	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	75851877	75851877	C	T	SNP	UVRAG	ENST00000356136	human	ensembl	74_37	+1	known	missense	c.1520	p.A507V	1.000	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom	-	no_errors	UVRAG	HGNC	ENSG00000198382				116	0	0	80	29	26.6055
TSKU	0	genome.wustl.edu	37	11	76507476	76507476	+	Silent	SNP	T	T	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	76507476	76507476	T	G	SNP	TSKU	ENST00000333090	human	ensembl	74_37	+1	known	silent	c.816	p.A272	0.035	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	TSKU	HGNC	ENSG00000182704				45	0	0	24	3	11.1111
NDUFC2	0	genome.wustl.edu	37	11	77784094	77784094	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	77784094	77784094	C	T	SNP	NDUFC2	ENST00000281031	human	ensembl	74_37	-1	known	missense	c.260	p.R87H	0.993	pfam_NADH-UbQ_OxRdtase_b14.5b_su,pirsf_NADH-UbQ_OxRdtase_b14.5b_su	pfam_NADH-UbQ_OxRdtase_b14.5b_su,pirsf_NADH-UbQ_OxRdtase_b14.5b_su	-	no_errors	NDUFC2	HGNC	ENSG00000151366				127	0	0	108	11	9.2437
OR5P3	0	genome.wustl.edu	37	11	7846790	7846790	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	7846790	7846790	G	T	SNP	OR5P3	ENST00000328375	human	ensembl	74_37	-1	known	missense	c.730	p.H244N	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5P3	HGNC	ENSG00000182334				93	0	0	57	15	20.8333
OR5P3	0	genome.wustl.edu	37	11	7847232	7847232	+	Silent	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	7847232	7847232	A	G	SNP	OR5P3	ENST00000328375	human	ensembl	74_37	-1	known	silent	c.288	p.G96	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5P3	HGNC	ENSG00000182334				165	0	0	113	8	6.61157
NLRP10	0	genome.wustl.edu	37	11	7982197	7982197	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	7982197	7982197	G	A	SNP	NLRP10	ENST00000328600	human	ensembl	74_37	-1	known	missense	c.962	p.A321V	0.000	superfamily_P-loop_NTPase,pfscan_NACHT_NTPase	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP10	HGNC	ENSG00000182261				126	0	0	69	33	32.3529
TUB	0	genome.wustl.edu	37	11	8119372	8119372	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	8119372	8119372	C	T	SNP	TUB	ENST00000305253	human	ensembl	74_37	+1	known	missense	c.1162	p.R388W	1.000	pfam_Tubby_C,superfamily_Tubby_C-like,prints_Tubby_C	pfam_Tubby_C,superfamily_Tubby_C-like,prints_Tubby_N,prints_Tubby_C	-	no_errors	TUB	HGNC	ENSG00000166402				116	0	0	67	34	33.6634
LMO1	0	genome.wustl.edu	37	11	8248580	8248580	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	8248580	8248580	G	A	SNP	LMO1	ENST00000335790	human	ensembl	74_37	-1	known	missense	c.307	p.R103W	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LMO1	HGNC	ENSG00000166407				22	0	0	10	10	50
LMO1	0	genome.wustl.edu	37	11	8248591	8248591	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	8248591	8248591	T	C	SNP	LMO1	ENST00000335790	human	ensembl	74_37	-1	known	missense	c.296	p.E99G	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LMO1	HGNC	ENSG00000166407				23	0	0	12	11	47.8261
PCF11	0	genome.wustl.edu	37	11	82868586	82868586	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	82868586	82868586	G	A	SNP	PCF11	ENST00000298281	human	ensembl	74_37	+1	known	silent	c.105	p.P35	1.000	superfamily_ENTH_VHS,smart_CID_dom	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,smart_CID_dom	-	no_errors	PCF11	HGNC	ENSG00000165494				103	0	0	88	9	9.27835
C11orf73	0	genome.wustl.edu	37	11	86048431	86048431	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	86048431	86048431	C	T	SNP	C11orf73	ENST00000278483	human	ensembl	74_37	+1	known	silent	c.279	p.S93	1.000	pfam_DUF775	pfam_DUF775	-	no_errors	C11orf73	HGNC	ENSG00000149196				129	0	0	105	14	11.7647
ME3	0	genome.wustl.edu	37	11	86267716	86267716	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	86267716	86267716	G	A	SNP	ME3	ENST00000359636	human	ensembl	74_37	-1	known	missense	c.346	p.R116W	1.000	pfam_Malic_N	pfam_Malic_NAD-bd,pfam_Malic_N,smart_Malic_NAD-bd,prints_Malic_OxRdtase	-	no_errors	ME3	HGNC	ENSG00000151376				73	0	0	42	18	30
TSPAN4	0	genome.wustl.edu	37	11	865745	865745	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	865745	865745	G	A	SNP	TSPAN4	ENST00000397397	human	ensembl	74_37	+1	known	missense	c.484	p.A162T	0.346	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN4	HGNC	ENSG00000214063				19	0	0	16	13	44.8276
GRM5	0	genome.wustl.edu	37	11	88300351	88300351	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	88300351	88300351	G	A	SNP	GRM5	ENST00000305447	human	ensembl	74_37	-1	known	missense	c.2500	p.R834C	1.000	pfscan_GPCR_3_C	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Metabotropic_Glu_rcpt_Homer-bd,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,prints_GPCR_3_mtglu_rcpt_5,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_1,pfscan_GPCR_3_C	-	no_errors	GRM5	HGNC	ENSG00000168959				75	0	0	40	9	18.3673
CHORDC1	0	genome.wustl.edu	37	11	89938663	89938663	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	89938663	89938663	T	C	SNP	CHORDC1	ENST00000320585	human	ensembl	74_37	-1	known	missense	c.634	p.T212A	1.000	pfam_CHORD,superfamily_HSP20-like_chaperone	pfam_CHORD,pfam_CS_dom,superfamily_HSP20-like_chaperone,pfscan_CS_dom	-	no_errors	CHORDC1	HGNC	ENSG00000110172				86	0	0	61	17	21.7949
FAT3	0	genome.wustl.edu	37	11	92507336	92507336	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	92507336	92507336	C	T	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	missense	c.4325	p.A1442V	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323				46	0	0	38	4	9.52381
MTNR1B	0	genome.wustl.edu	37	11	92715429	92715429	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	92715429	92715429	G	A	SNP	MTNR1B	ENST00000257068	human	ensembl	74_37	+1	known	missense	c.1040	p.S347N	0.983	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Melatonin_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt,prints_Mel_1A_rcpt	-	no_errors	MTNR1B	HGNC	ENSG00000134640				82	0	0	49	19	27.9412
VSTM5	0	genome.wustl.edu	37	11	93554356	93554356	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	93554356	93554356	C	T	SNP	VSTM5	ENST00000409977	human	ensembl	74_37	-1	known	silent	c.225	p.T75	0.017	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_V-set,smart_Ig_sub	-	no_errors	VSTM5	HGNC	ENSG00000214376				10	0	0	15	5	25
HEPHL1	0	genome.wustl.edu	37	11	93796832	93796832	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	93796832	93796832	G	A	SNP	HEPHL1	ENST00000315765	human	ensembl	74_37	+1	known	missense	c.574	p.A192T	1.000	pfam_Cu-oxidase_3,superfamily_Cupredoxin	pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Cupredoxin	-	no_errors	HEPHL1	HGNC	ENSG00000181333				135	0	0	100	6	5.66038
HEPHL1	0	genome.wustl.edu	37	11	93826690	93826690	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	93826690	93826690	G	A	SNP	HEPHL1	ENST00000315765	human	ensembl	74_37	+1	known	missense	c.2318	p.R773H	1.000	superfamily_Cupredoxin	pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Cupredoxin	-	no_errors	HEPHL1	HGNC	ENSG00000181333				224	1	0.444444	112	43	27.7419
PIWIL4	0	genome.wustl.edu	37	11	94326774	94326774	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	94326774	94326774	G	A	SNP	PIWIL4	ENST00000299001	human	ensembl	74_37	+1	known	missense	c.1117	p.A373T	0.277	pfam_PAZ_dom,superfamily_PAZ_dom,smart_PAZ_dom,pfscan_PAZ_dom	pfam_Piwi,pfam_PAZ_dom,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	PIWIL4	HGNC	ENSG00000134627				121	0	0	76	22	22.449
IPO7	0	genome.wustl.edu	37	11	9457899	9457899	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	9457899	9457899	C	T	SNP	IPO7	ENST00000379719	human	ensembl	74_37	+1	known	missense	c.2254	p.R752C	1.000	superfamily_ARM-type_fold	pfam_Importin-beta_N,pfam_Cse1,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	IPO7	HGNC	ENSG00000205339				39	0	0	28	11	28.2051
AMOTL1	0	genome.wustl.edu	37	11	94599243	94599243	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	94599243	94599243	G	A	SNP	AMOTL1	ENST00000433060	human	ensembl	74_37	+1	known	missense	c.2398	p.A800T	0.995	pfam_Angiomotin_C	pfam_Angiomotin_C,prints_Angiomotin	-	no_errors	AMOTL1	HGNC	ENSG00000166025				64	0	0	47	16	25.3968
SBF2	0	genome.wustl.edu	37	11	9838554	9838554	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	9838554	9838554	G	A	SNP	SBF2	ENST00000256190	human	ensembl	74_37	-1	known	missense	c.3811	p.R1271C	1.000	NULL	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotubularin-like_Pase_dom,pfam_dDENN_dom,pfam_Pleckstrin_homology,pfam_GRAM,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF2	HGNC	ENSG00000133812				73	0	0	66	20	23.2558
UHRF1BP1L	0	genome.wustl.edu	37	12	100482858	100482858	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	100482858	100482858	C	T	SNP	UHRF1BP1L	ENST00000279907	human	ensembl	74_37	-1	known	missense	c.856	p.A286T	0.143	NULL	NULL	-	no_errors	UHRF1BP1L	HGNC	ENSG00000111647				98	0	0	82	5	5.74713
GAS2L3	0	genome.wustl.edu	37	12	101018596	101018596	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	101018596	101018596	A	T	SNP	GAS2L3	ENST00000266754	human	ensembl	74_37	+1	known	missense	c.2013	p.K671N	0.000	NULL	pfam_GAS2_dom,pfam_CH-domain,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_GAS2_dom,pfscan_CH-domain	-	no_errors	GAS2L3	HGNC	ENSG00000139354				106	0	0	62	31	33.3333
CLEC1B	0	genome.wustl.edu	37	12	10147759	10147759	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	10147759	10147759	G	A	SNP	CLEC1B	ENST00000298527	human	ensembl	74_37	-1	known	silent	c.525	p.G175	0.824	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CLEC1B	HGNC	ENSG00000165682				287	0	0	164	62	27.4336
SLC5A8	0	genome.wustl.edu	37	12	101588918	101588918	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	101588918	101588918	G	A	SNP	SLC5A8	ENST00000536262	human	ensembl	74_37	-1	known	silent	c.492	p.G164	0.131	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A8	HGNC	ENSG00000256870				47	0	0	27	8	22.8571
UTP20	0	genome.wustl.edu	37	12	101720944	101720944	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	101720944	101720944	C	T	SNP	UTP20	ENST00000261637	human	ensembl	74_37	+1	known	missense	c.3127	p.R1043W	0.999	pfam_DRIM,superfamily_ARM-type_fold	pfam_DRIM,superfamily_ARM-type_fold	-	no_errors	UTP20	HGNC	ENSG00000120800				125	0	0	115	13	10.1562
CLEC9A	0	genome.wustl.edu	37	12	10206943	10206943	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	10206943	10206943	C	T	SNP	CLEC9A	ENST00000355819	human	ensembl	74_37	+1	putative	silent	c.165	p.G55	0.401	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CLEC9A	HGNC	ENSG00000197992				48	0	0	35	5	12.5
RAD52	0	genome.wustl.edu	37	12	1025613	1025613	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	1025613	1025613	C	T	SNP	RAD52	ENST00000536177	human	ensembl	74_37	-1	novel	missense	c.814	p.A272T	0.000	NULL	pfam_Rad52_Rad22,tigrfam_DNA_recomb/repair_Rad52	-	no_errors	RAD52	HGNC	ENSG00000002016				18	0	0	14	4	22.2222
C12orf42	0	genome.wustl.edu	37	12	103699756	103699756	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	103699756	103699756	A	T	SNP	C12orf42	ENST00000378113	human	ensembl	74_37	-1	known	missense	c.627	p.N209K	0.001	NULL	NULL	-	no_errors	C12orf42	HGNC	ENSG00000179088				211	0	0	162	54	25
GABARAPL1	0	genome.wustl.edu	37	12	10370695	10370695	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	10370695	10370695	C	T	SNP	GABARAPL1	ENST00000266458	human	ensembl	74_37	+1	known	missense	c.124	p.P42S	1.000	pfam_Atg8_fam,pfam_Atg12	pfam_Atg8_fam,pfam_Atg12	-	no_errors	GABARAPL1	HGNC	ENSG00000139112				64	0	0	35	14	28.5714
C12orf42	0	genome.wustl.edu	37	12	103872137	103872137	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	103872137	103872137	T	A	SNP	C12orf42	ENST00000378113	human	ensembl	74_37	-1	known	missense	c.68	p.N23I	0.015	NULL	NULL	-	no_errors	C12orf42	HGNC	ENSG00000179088				26	0	0	20	3	13.0435
STAB2	0	genome.wustl.edu	37	12	104136204	104136204	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	104136204	104136204	C	T	SNP	STAB2	ENST00000388887	human	ensembl	74_37	+1	known	missense	c.5903	p.A1968V	0.057	smart_EG-like_dom,smart_EGF_laminin,pfscan_EG-like_dom	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_FAS1_domain,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB2	HGNC	ENSG00000136011				89	0	0	54	19	26.0274
ENSG00000257681	0	genome.wustl.edu	37	12	104157220	104157220	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	104157220	104157220	G	A	SNP	ENSG00000257681	ENST00000550029	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-341G23.4	Clone_based_vega_gene	ENSG00000257681				271	0	0	157	69	30.531
HSP90B1	0	genome.wustl.edu	37	12	104335416	104335416	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	104335416	104335416	C	T	SNP	HSP90B1	ENST00000299767	human	ensembl	74_37	+1	known	missense	c.1240	p.R414C	1.000	pirsf_Hsp90_fam,pfam_Hsp90_fam,superfamily_Ribosomal_S5_D2-typ_fold	pirsf_Hsp90_fam,pfam_Hsp90_fam,pfam_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_HATPase_ATP-bd,smart_HATPase_ATP-bd,prints_Hsp90_N	-	no_errors	HSP90B1	HGNC	ENSG00000166598				71	0	0	60	6	9.09091
TXNRD1	0	genome.wustl.edu	37	12	104682747	104682747	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	104682747	104682747	G	T	SNP	TXNRD1	ENST00000429002	human	ensembl	74_37	+1	known	missense	c.343	p.A115S	0.253	pfam_Glutaredoxin,superfamily_Thioredoxin-like_fold	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_nucl-diS_OxRdtase_dimer,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_FAD_bind_dom,pfam_Glutaredoxin,superfamily_FAD/NAD-linked_Rdtase_dimer,superfamily_Thioredoxin-like_fold,prints_FAD_pyr_nucl-diS_OxRdtase,prints_Hg_reductase,prints_Pyridine_nuc-diS_OxRdtase_2,tigrfam_Thioredoxin/glutathione_Rdtase	-	no_errors	TXNRD1	HGNC	ENSG00000198431				126	0	0	92	37	28.6822
KIAA1033	0	genome.wustl.edu	37	12	105531765	105531765	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	105531765	105531765	G	C	SNP	KIAA1033	ENST00000332180	human	ensembl	74_37	+1	known	missense	c.1428	p.L476F	0.977	NULL	NULL	-	no_errors	KIAA1033	HGNC	ENSG00000136051				75	0	0	44	18	29.0323
PWP1	0	genome.wustl.edu	37	12	108082253	108082253	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	108082253	108082253	G	A	SNP	PWP1	ENST00000412830	human	ensembl	74_37	+1	known	missense	c.101	p.R34H	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PWP1	HGNC	ENSG00000136045				79	0	0	50	26	34.2105
FICD	0	genome.wustl.edu	37	12	108912521	108912521	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	108912521	108912521	C	T	SNP	FICD	ENST00000552695	human	ensembl	74_37	+1	known	missense	c.646	p.R216C	1.000	NULL	pfam_Fido,superfamily_Fido,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	FICD	HGNC	ENSG00000198855				68	0	0	49	9	15.5172
FICD	0	genome.wustl.edu	37	12	108913112	108913112	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	108913112	108913112	C	T	SNP	FICD	ENST00000552695	human	ensembl	74_37	+1	known	missense	c.1237	p.P413S	1.000	superfamily_Fido	pfam_Fido,superfamily_Fido,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	FICD	HGNC	ENSG00000198855				60	0	0	34	17	33.3333
SELPLG	0	genome.wustl.edu	37	12	109017688	109017688	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	109017688	109017688	C	A	SNP	SELPLG	ENST00000550948	human	ensembl	74_37	-1	known	missense	c.396	p.Q132H	0.000	NULL	NULL	-	no_errors	SELPLG	HGNC	ENSG00000110876				77	0	0	60	5	7.69231
SELPLG	0	genome.wustl.edu	37	12	109017769	109017769	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	109017769	109017769	C	A	SNP	SELPLG	ENST00000550948	human	ensembl	74_37	-1	known	missense	c.315	p.E105D	0.000	NULL	NULL	-	no_errors	SELPLG	HGNC	ENSG00000110876				57	0	0	37	11	22.9167
ACACB	0	genome.wustl.edu	37	12	109577464	109577464	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	109577464	109577464	C	T	SNP	ACACB	ENST00000338432	human	ensembl	74_37	+1	known	missense	c.254	p.A85V	0.000	NULL	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACB	HGNC	ENSG00000076555				73	0	0	49	24	32.8767
ACACB	0	genome.wustl.edu	37	12	109639432	109639432	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	109639432	109639432	C	T	SNP	ACACB	ENST00000338432	human	ensembl	74_37	+1	known	missense	c.2839	p.R947C	1.000	pfam_Biotin_lipoyl,superfamily_Single_hybrid_motif,pfscan_Biotin_lipoyl	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACB	HGNC	ENSG00000076555				97	0	0	53	24	31.1688
KCTD10	0	genome.wustl.edu	37	12	109898545	109898545	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	109898545	109898545	C	T	SNP	KCTD10	ENST00000228495	human	ensembl	74_37	-1	known	missense	c.283	p.A95T	1.000	pfam_T1-type_BTB,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_T1-type_BTB,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	KCTD10	HGNC	ENSG00000110906				72	0	0	34	11	24.4444
UBE3B	0	genome.wustl.edu	37	12	109962256	109962256	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	109962256	109962256	A	G	SNP	UBE3B	ENST00000342494	human	ensembl	74_37	+1	known	missense	c.2516	p.D839G	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_IQ_motif_EF-hand-BS,superfamily_HECT,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,smart_HECT,pfscan_HECT,pfscan_IQ_motif_EF-hand-BS	-	no_errors	UBE3B	HGNC	ENSG00000151148				45	0	0	50	4	7.40741
MVK	0	genome.wustl.edu	37	12	110019211	110019211	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	110019211	110019211	G	A	SNP	MVK	ENST00000228510	human	ensembl	74_37	+1	known	missense	c.383	p.S128N	1.000	superfamily_Ribosomal_S5_D2-typ_fold,tigrfam_Mev_gal_kin	pfam_GHMP_kinase_N_dom,pfam_GHMP_kinase_C_dom,superfamily_Ribosomal_S5_D2-typ_fold,prints_Mevalonate/galactokinase,prints_Galkinase,tigrfam_Mev_gal_kin	-	no_errors	MVK	HGNC	ENSG00000110921				74	0	0	44	17	27.8689
TRPV4	0	genome.wustl.edu	37	12	110240894	110240894	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	110240894	110240894	C	T	SNP	TRPV4	ENST00000261740	human	ensembl	74_37	-1	known	missense	c.614	p.G205D	1.000	prints_TRPV1-4_channel,tigrfam_TRP_channel	pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV1-4_channel,prints_TRPV4_channel,tigrfam_TRP_channel	-	no_errors	TRPV4	HGNC	ENSG00000111199				38	0	0	34	8	19.0476
TCHP	0	genome.wustl.edu	37	12	110350854	110350854	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	110350854	110350854	G	A	SNP	TCHP	ENST00000312777	human	ensembl	74_37	+1	known	missense	c.1111	p.A371T	0.990	NULL	NULL	-	no_errors	TCHP	HGNC	ENSG00000139437				22	0	0	26	4	13.3333
GPN3	0	genome.wustl.edu	37	12	110906005	110906005	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	110906005	110906005	G	A	SNP	GPN3	ENST00000537466	human	ensembl	74_37	-1	known	missense	c.4	p.P2S	1.000	NULL	pfam_Uncharacterised_ATP-bd,superfamily_P-loop_NTPase	-	no_errors	GPN3	HGNC	ENSG00000111231				40	0	0	23	12	34.2857
PPP1CC	0	genome.wustl.edu	37	12	111169698	111169698	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	111169698	111169698	A	G	SNP	PPP1CC	ENST00000340766	human	ensembl	74_37	-1	known	missense	c.64	p.S22P	1.000	NULL	pfam_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP1CC	HGNC	ENSG00000186298				126	0	0	101	7	6.48148
ATXN2	0	genome.wustl.edu	37	12	111895132	111895132	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	111895132	111895132	C	T	SNP	ATXN2	ENST00000377617	human	ensembl	74_37	-1	known	silent	c.3402	p.A1134	0.654	NULL	pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom	-	no_errors	ATXN2	HGNC	ENSG00000204842				66	0	0	68	7	9.33333
ALDH2	0	genome.wustl.edu	37	12	112221101	112221101	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	112221101	112221101	C	T	SNP	ALDH2	ENST00000261733	human	ensembl	74_37	+1	known	missense	c.359	p.A120V	1.000	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH2	HGNC	ENSG00000111275				38	0	0	21	6	22.2222
NAA25	0	genome.wustl.edu	37	12	112513574	112513574	+	Silent	SNP	A	A	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	112513574	112513574	A	T	SNP	NAA25	ENST00000261745	human	ensembl	74_37	-1	known	silent	c.684	p.I228	0.950	NULL	pfam_N-acetylTrfase_B_cplx_non-cat,pfscan_TPR-contain_dom	-	no_errors	NAA25	HGNC	ENSG00000111300				55	0	0	41	15	26.7857
TRAFD1	0	genome.wustl.edu	37	12	112589844	112589844	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	112589844	112589844	G	A	SNP	TRAFD1	ENST00000257604	human	ensembl	74_37	+1	known	missense	c.1519	p.A507T	0.027	NULL	superfamily_TRAF-like	-	no_errors	TRAFD1	HGNC	ENSG00000135148				185	0	0	120	46	27.7108
HECTD4	0	genome.wustl.edu	37	12	112632704	112632704	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	112632704	112632704	C	T	SNP	HECTD4	ENST00000377560	human	ensembl	74_37	-1	known	missense	c.8218	p.A2740T	0.991	NULL	pfam_HECT,superfamily_HECT,superfamily_ConA-like_lec_gl_sf,smart_HECT,pfscan_HECT	-	no_errors	HECTD4	HGNC	ENSG00000173064				17	0	0	15	7	31.8182
HECTD4	0	genome.wustl.edu	37	12	112657288	112657288	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	112657288	112657288	G	A	SNP	HECTD4	ENST00000377560	human	ensembl	74_37	-1	known	nonsense	c.6460	p.R2154*	1.000	NULL	pfam_HECT,superfamily_HECT,superfamily_ConA-like_lec_gl_sf,smart_HECT,pfscan_HECT	-	no_errors	HECTD4	HGNC	ENSG00000173064				33	0	0	14	8	36.3636
HECTD4	0	genome.wustl.edu	37	12	112721041	112721041	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	112721041	112721041	G	A	SNP	HECTD4	ENST00000377560	human	ensembl	74_37	-1	known	silent	c.969	p.G323	0.003	NULL	pfam_HECT,superfamily_HECT,superfamily_ConA-like_lec_gl_sf,smart_HECT,pfscan_HECT	-	no_errors	HECTD4	HGNC	ENSG00000173064				45	0	0	45	5	10
DTX1	0	genome.wustl.edu	37	12	113515327	113515327	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	113515327	113515327	G	T	SNP	DTX1	ENST00000257600	human	ensembl	74_37	+1	known	missense	c.358	p.A120S	1.000	pfam_WWE-dom,smart_WWE-dom_subgr,pfscan_WWE-dom	pfam_WWE-dom,smart_WWE-dom_subgr,smart_Znf_RING,pfscan_WWE-dom,pfscan_Znf_RING	-	no_errors	DTX1	HGNC	ENSG00000135144				32	0	0	22	9	29.0323
RASAL1	0	genome.wustl.edu	37	12	113545988	113545988	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	113545988	113545988	G	A	SNP	RASAL1	ENST00000546530	human	ensembl	74_37	-1	known	nonsense	c.1417	p.R473*	1.000	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,smart_RasGAP,pfscan_RasGAP	pfam_RasGAP,pfam_C2_dom,pfam_Znf_Btk_motif,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_C2_dom,smart_RasGAP,smart_Pleckstrin_homology,smart_Znf_Btk_motif,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_Znf_Btk_motif,pfscan_RasGAP	-	no_errors	RASAL1	HGNC	ENSG00000111344				21	0	0	19	7	26.9231
DDX54	0	genome.wustl.edu	37	12	113612541	113612541	+	Silent	SNP	A	A	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	113612541	113612541	A	T	SNP	DDX54	ENST00000314045	human	ensembl	74_37	-1	known	silent	c.972	p.A324	0.228	superfamily_P-loop_NTPase	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_DBP10CT,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX54	HGNC	ENSG00000123064				33	0	0	20	7	25.9259
ERC1	0	genome.wustl.edu	37	12	1137664	1137664	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	1137664	1137664	G	T	SNP	ERC1	ENST00000360905	human	ensembl	74_37	+1	known	missense	c.595	p.A199S	1.000	pfam_CAZ_cplx_RIM-bd_prot	pfam_CAZ_cplx_RIM-bd_prot,pfam_Rab-bd_FIP-RBD,superfamily_Prefoldin	-	no_errors	ERC1	HGNC	ENSG00000082805				82	0	0	51	16	23.8806
PLBD2	0	genome.wustl.edu	37	12	113822727	113822727	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	113822727	113822727	T	C	SNP	PLBD2	ENST00000280800	human	ensembl	74_37	+1	known	missense	c.1190	p.V397A	1.000	pfam_PLipase_B-like	pfam_PLipase_B-like	-	no_errors	PLBD2	HGNC	ENSG00000151176				21	0	0	11	6	35.2941
SDS	0	genome.wustl.edu	37	12	113830802	113830802	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	113830802	113830802	C	T	SNP	SDS	ENST00000257549	human	ensembl	74_37	-1	known	missense	c.931	p.A311T	0.996	superfamily_Trp_syn_b_sub_like_PLP_eny_SF	pfam_Trp_syn_b_sub_like_PLP_eny_SF,superfamily_Trp_syn_b_sub_like_PLP_eny_SF	-	no_errors	SDS	HGNC	ENSG00000135094				110	0	0	74	38	33.9286
SDSL	0	genome.wustl.edu	37	12	113875760	113875760	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	113875760	113875760	G	A	SNP	SDSL	ENST00000345635	human	ensembl	74_37	+1	known	missense	c.866	p.R289Q	0.280	pfam_Trp_syn_b_sub_like_PLP_eny_SF,superfamily_Trp_syn_b_sub_like_PLP_eny_SF	pfam_Trp_syn_b_sub_like_PLP_eny_SF,superfamily_Trp_syn_b_sub_like_PLP_eny_SF	-	no_errors	SDSL	HGNC	ENSG00000139410				184	0	0	112	35	23.8095
FBXO21	0	genome.wustl.edu	37	12	117604880	117604880	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	117604880	117604880	G	A	SNP	FBXO21	ENST00000330622	human	ensembl	74_37	-1	known	missense	c.1016	p.A339V	0.951	superfamily_F-box_dom	pfam_Hemimethylated_DNA-bd_dom,superfamily_Hemimethylated_DNA-bd_dom,superfamily_F-box_dom,tigrfam_Hemimethylated_DNA-bd_dom	-	no_errors	FBXO21	HGNC	ENSG00000135108				43	0	0	20	16	44.4444
NOS1	0	genome.wustl.edu	37	12	117672544	117672544	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	117672544	117672544	G	A	SNP	NOS1	ENST00000317775	human	ensembl	74_37	-1	known	missense	c.3061	p.R1021C	1.000	pfam_FAD-binding_1,superfamily_Riboflavin_synthase-like_b-brl,pirsf_NOS_euk	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,pfam_PDZ,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,superfamily_PDZ,smart_PDZ,pirsf_NOS_euk,pfscan_PDZ,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS1	HGNC	ENSG00000089250				23	0	0	15	5	25
NOS1	0	genome.wustl.edu	37	12	117705930	117705930	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	117705930	117705930	T	C	SNP	NOS1	ENST00000317775	human	ensembl	74_37	-1	known	missense	c.1859	p.N620S	0.993	pfam_NO_synthase_oxygenase_dom,superfamily_NO_synthase_oxygenase_dom,pirsf_NOS_euk	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,pfam_PDZ,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,superfamily_PDZ,smart_PDZ,pirsf_NOS_euk,pfscan_PDZ,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS1	HGNC	ENSG00000089250				57	0	0	51	17	25
KSR2	0	genome.wustl.edu	37	12	118105353	118105353	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	118105353	118105353	C	T	SNP	KSR2	ENST00000339824	human	ensembl	74_37	-1	known	missense	c.1097	p.R366H	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	KSR2	HGNC	ENSG00000171435				33	0	0	21	10	32.2581
KSR2	0	genome.wustl.edu	37	12	118199014	118199014	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	118199014	118199014	C	T	SNP	KSR2	ENST00000339824	human	ensembl	74_37	-1	known	missense	c.788	p.R263H	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	KSR2	HGNC	ENSG00000171435				33	0	0	20	5	20
VSIG10	0	genome.wustl.edu	37	12	118506296	118506296	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	118506296	118506296	G	A	SNP	VSIG10	ENST00000359236	human	ensembl	74_37	-1	known	missense	c.1453	p.R485C	0.000	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	VSIG10	HGNC	ENSG00000176834				60	0	0	52	12	18.75
VSIG10	0	genome.wustl.edu	37	12	118517172	118517172	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	118517172	118517172	C	T	SNP	VSIG10	ENST00000359236	human	ensembl	74_37	-1	known	missense	c.904	p.A302T	0.863	pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	VSIG10	HGNC	ENSG00000176834				63	0	0	46	30	39.4737
TAOK3	0	genome.wustl.edu	37	12	118627718	118627718	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	118627718	118627718	C	T	SNP	TAOK3	ENST00000392533	human	ensembl	74_37	-1	known	missense	c.1223	p.G408D	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TAOK3	HGNC	ENSG00000135090				96	0	0	59	26	30.5882
SUDS3	0	genome.wustl.edu	37	12	118828947	118828947	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	118828947	118828947	G	A	SNP	SUDS3	ENST00000397564	human	ensembl	74_37	+1	known	missense	c.380	p.R127Q	1.000	pfam_Sds3	pfam_Sds3	-	no_errors	SUDS3	HGNC	ENSG00000111707				127	0	0	88	27	23.4783
SRRM4	0	genome.wustl.edu	37	12	119588980	119588980	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	119588980	119588980	C	A	SNP	SRRM4	ENST00000267260	human	ensembl	74_37	+1	known	missense	c.1235	p.A412D	0.998	NULL	NULL	-	no_errors	SRRM4	HGNC	ENSG00000139767				81	0	0	60	28	31.8182
CIT	0	genome.wustl.edu	37	12	120142248	120142248	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	120142248	120142248	G	A	SNP	CIT	ENST00000261833	human	ensembl	74_37	-1	known	missense	c.5098	p.L1700F	1.000	pfam_Citron,smart_Citron,pirsf_Citron_Rho-interacting_kinase	pfam_Citron,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,pirsf_Citron_Rho-interacting_kinase,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	CIT	HGNC	ENSG00000122966				68	0	0	29	17	36.9565
RAB35	0	genome.wustl.edu	37	12	120546405	120546405	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	120546405	120546405	C	T	SNP	RAB35	ENST00000544304	human	ensembl	74_37	-1	known	missense	c.155	p.S52N	0.002	NULL	NULL	-	no_errors	RAB35	HGNC	ENSG00000111737				8	0	0	5	5	50
ACADS	0	genome.wustl.edu	37	12	121175675	121175675	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	121175675	121175675	G	A	SNP	ACADS	ENST00000242592	human	ensembl	74_37	+1	known	missense	c.508	p.A170T	1.000	pfam_Acyl-CoA_Oxase/DH_cen-dom,superfamily_AcylCoA_DH/oxidase_NM_dom	pfam_AcylCo_DH/oxidase_C,pfam_AcylCoA_DH/ox_N,pfam_Acyl-CoA_DH_2_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,superfamily_AcylCoA_DH/oxidase_NM_dom,superfamily_AcylCo_DH/oxidase_C	-	no_errors	ACADS	HGNC	ENSG00000122971				40	0	0	23	9	28.125
ACADS	0	genome.wustl.edu	37	12	121177116	121177116	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	121177116	121177116	C	T	SNP	ACADS	ENST00000242592	human	ensembl	74_37	+1	known	silent	c.1104	p.G368	0.475	pfam_AcylCo_DH/oxidase_C,pfam_Acyl-CoA_DH_2_C,superfamily_AcylCo_DH/oxidase_C	pfam_AcylCo_DH/oxidase_C,pfam_AcylCoA_DH/ox_N,pfam_Acyl-CoA_DH_2_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,superfamily_AcylCoA_DH/oxidase_NM_dom,superfamily_AcylCo_DH/oxidase_C	-	no_errors	ACADS	HGNC	ENSG00000122971				31	0	0	21	6	22.2222
SPPL3	0	genome.wustl.edu	37	12	121205248	121205248	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	121205248	121205248	G	A	SNP	SPPL3	ENST00000353487	human	ensembl	74_37	-1	known	missense	c.922	p.R308C	1.000	pfam_Peptidase_A22B_SPP,smart_Preselin/SPP	pfam_Peptidase_A22B_SPP,smart_Preselin/SPP	-	no_errors	SPPL3	HGNC	ENSG00000157837				38	0	0	39	14	26.4151
ENSG00000271769	0	genome.wustl.edu	37	12	121438773	121438773	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	121438773	121438773	G	A	SNP	ENSG00000271769	ENST00000606238	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.161	-	-	-	no_errors	RP11-216P16.2	Clone_based_vega_gene	ENSG00000271769				15	0	0	9	5	35.7143
WDR66	0	genome.wustl.edu	37	12	122359496	122359496	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	122359496	122359496	A	C	SNP	WDR66	ENST00000288912	human	ensembl	74_37	+1	known	missense	c.285	p.E95D	0.004	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR66	HGNC	ENSG00000158023				106	0	0	98	8	7.54717
WDR66	0	genome.wustl.edu	37	12	122372182	122372182	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	122372182	122372182	C	T	SNP	WDR66	ENST00000288912	human	ensembl	74_37	+1	known	silent	c.918	p.C306	0.353	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR66	HGNC	ENSG00000158023				40	0	0	29	7	19.4444
WDR66	0	genome.wustl.edu	37	12	122396992	122396992	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	122396992	122396992	G	A	SNP	WDR66	ENST00000288912	human	ensembl	74_37	+1	known	missense	c.2125	p.A709T	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR66	HGNC	ENSG00000158023				167	1	0.595238	109	42	27.8146
B3GNT4	0	genome.wustl.edu	37	12	122691165	122691165	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	122691165	122691165	G	A	SNP	B3GNT4	ENST00000324189	human	ensembl	74_37	+1	known	missense	c.367	p.A123T	1.000	NULL	pfam_Glyco_trans_31,pfam_Fringe-like	-	no_errors	B3GNT4	HGNC	ENSG00000176383				200	0	0	160	9	5.32544
VPS33A	0	genome.wustl.edu	37	12	122716928	122716928	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	122716928	122716928	G	A	SNP	VPS33A	ENST00000267199	human	ensembl	74_37	-1	known	silent	c.1656	p.G552	0.010	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	VPS33A	HGNC	ENSG00000139719				92	0	0	68	6	8.10811
HCAR1	0	genome.wustl.edu	37	12	123214781	123214781	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	123214781	123214781	C	T	SNP	HCAR1	ENST00000356987	human	ensembl	74_37	-1	known	missense	c.106	p.A36T	0.997	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	HCAR1	HGNC	ENSG00000196917				45	0	0	32	4	11.1111
LRP6	0	genome.wustl.edu	37	12	12334196	12334196	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	12334196	12334196	C	T	SNP	LRP6	ENST00000261349	human	ensembl	74_37	-1	known	missense	c.1154	p.R385H	1.000	pirsf_Low_density_Lipo_rcpt-rel_p5/6,pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pirsf_Low_density_Lipo_rcpt-rel_p5/6,pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDLR_classB_rpt,smart_EG-like_dom,smart_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP6	HGNC	ENSG00000070018				127	0	0	115	9	7.25806
MPHOSPH9	0	genome.wustl.edu	37	12	123687564	123687564	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	123687564	123687564	C	T	SNP	MPHOSPH9	ENST00000392425	human	ensembl	74_37	-1	known	missense	c.932	p.G311D	0.009	NULL	superfamily_Prefoldin	-	no_errors	MPHOSPH9	HGNC	ENSG00000051825				165	0	0	126	45	26.3158
RILPL2	0	genome.wustl.edu	37	12	123915117	123915117	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	123915117	123915117	C	T	SNP	RILPL2	ENST00000280571	human	ensembl	74_37	-1	known	silent	c.429	p.Q143	1.000	pfam_RILP	pfam_RILP	-	no_errors	RILPL2	HGNC	ENSG00000150977				130	0	0	95	5	5
RILPL1	0	genome.wustl.edu	37	12	123957201	123957201	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	123957201	123957201	G	A	SNP	RILPL1	ENST00000376874	human	ensembl	74_37	-1	known	missense	c.1096	p.R366C	1.000	NULL	pfam_JNK/Rab-associated_protein-1_N,pfam_RILP	-	no_errors	RILPL1	HGNC	ENSG00000188026				19	0	0	8	4	33.3333
GTF2H3	0	genome.wustl.edu	37	12	124144112	124144112	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	124144112	124144112	C	A	SNP	GTF2H3	ENST00000543341	human	ensembl	74_37	+1	known	missense	c.665	p.S222Y	1.000	pfam_TFIIH_Tfb4/p34,tigrfam_TFIIH_Tfb4/p34	pfam_TFIIH_Tfb4/p34,tigrfam_TFIIH_Tfb4/p34	-	no_errors	GTF2H3	HGNC	ENSG00000111358				42	0	0	31	14	31.1111
DNAH10	0	genome.wustl.edu	37	12	124270301	124270301	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	124270301	124270301	G	A	SNP	DNAH10	ENST00000409039	human	ensembl	74_37	+1	known	silent	c.1056	p.T352	0.005	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_PyrdxlP-dep_Trfase,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653				68	0	0	43	12	21.8182
DNAH10	0	genome.wustl.edu	37	12	124337847	124337847	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	124337847	124337847	C	T	SNP	DNAH10	ENST00000409039	human	ensembl	74_37	+1	known	missense	c.6032	p.S2011L	1.000	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_PyrdxlP-dep_Trfase,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653				29	0	0	14	4	22.2222
CCDC92	0	genome.wustl.edu	37	12	124422003	124422003	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	124422003	124422003	C	T	SNP	CCDC92	ENST00000238156	human	ensembl	74_37	-1	known	missense	c.598	p.E200K	1.000	NULL	NULL	-	no_errors	CCDC92	HGNC	ENSG00000119242				33	0	0	27	6	18.1818
FAM101A	0	genome.wustl.edu	37	12	124798908	124798908	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	124798908	124798908	G	A	SNP	FAM101A	ENST00000389727	human	ensembl	74_37	+1	known	missense	c.488	p.R163H	0.475	NULL	NULL	-	no_errors	FAM101A	HGNC	ENSG00000178882				75	0	0	51	4	7.27273
NCOR2	0	genome.wustl.edu	37	12	124857100	124857100	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	124857100	124857100	C	T	SNP	NCOR2	ENST00000356219	human	ensembl	74_37	-1	known	missense	c.2275	p.A759T	0.186	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR2	HGNC	ENSG00000196498				39	0	0	18	16	47.0588
DHX37	0	genome.wustl.edu	37	12	125448952	125448952	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	125448952	125448952	C	T	SNP	DHX37	ENST00000308736	human	ensembl	74_37	-1	known	missense	c.2033	p.G678D	1.000	superfamily_P-loop_NTPase,pfscan_Helicase_C	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_T2SS_protein-E,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX37	HGNC	ENSG00000150990				29	0	0	15	11	42.3077
TMEM132B	0	genome.wustl.edu	37	12	125900205	125900205	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	125900205	125900205	G	A	SNP	TMEM132B	ENST00000299308	human	ensembl	74_37	+1	known	missense	c.1073	p.R358H	0.000	NULL	NULL	-	no_errors	TMEM132B	HGNC	ENSG00000139364				43	0	0	43	12	21.8182
TMEM132B	0	genome.wustl.edu	37	12	126138478	126138478	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	126138478	126138478	G	A	SNP	TMEM132B	ENST00000299308	human	ensembl	74_37	+1	known	missense	c.2459	p.R820H	0.647	NULL	NULL	-	no_errors	TMEM132B	HGNC	ENSG00000139364				85	0	0	61	26	29.8851
DUSP16	0	genome.wustl.edu	37	12	12630760	12630760	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	12630760	12630760	C	T	SNP	DUSP16	ENST00000228862	human	ensembl	74_37	-1	known	silent	c.1005	p.T335	0.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP	-	no_errors	DUSP16	HGNC	ENSG00000111266				59	0	0	45	21	31.8182
ERC1	0	genome.wustl.edu	37	12	1299205	1299205	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	1299205	1299205	G	A	SNP	ERC1	ENST00000360905	human	ensembl	74_37	+1	known	missense	c.2338	p.A780T	1.000	pfam_CAZ_cplx_RIM-bd_prot	pfam_CAZ_cplx_RIM-bd_prot,pfam_Rab-bd_FIP-RBD,superfamily_Prefoldin	-	no_errors	ERC1	HGNC	ENSG00000082805				97	0	0	84	6	6.66667
FZD10	0	genome.wustl.edu	37	12	130647640	130647640	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	130647640	130647640	T	C	SNP	FZD10	ENST00000539839	human	ensembl	74_37	+1	known	missense	c.55	p.Y19H	1.000	NULL	NULL	-	no_errors	FZD10	HGNC	ENSG00000111432				23	0	0	8	5	38.4615
PIWIL1	0	genome.wustl.edu	37	12	130842068	130842068	+	Silent	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	130842068	130842068	A	G	SNP	PIWIL1	ENST00000245255	human	ensembl	74_37	+1	known	silent	c.1635	p.L545	0.945	superfamily_RNaseH-like_dom	pfam_Piwi,pfam_PAZ_dom,pfam_GAGE,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	PIWIL1	HGNC	ENSG00000125207				103	0	0	64	24	27.2727
RIMBP2	0	genome.wustl.edu	37	12	130919323	130919323	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	130919323	130919323	C	T	SNP	RIMBP2	ENST00000261655	human	ensembl	74_37	-1	known	missense	c.2158	p.A720T	0.980	NULL	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	RIMBP2	HGNC	ENSG00000060709				67	0	0	35	12	25.5319
SFSWAP	0	genome.wustl.edu	37	12	132239022	132239022	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	132239022	132239022	G	A	SNP	SFSWAP	ENST00000261674	human	ensembl	74_37	+1	known	missense	c.1432	p.V478I	1.000	pfam_Surp,superfamily_Surp,smart_Surp,pfscan_Surp	pfam_SWAP_N_domain,pfam_Surp,superfamily_Surp,smart_Surp,pfscan_Surp	-	no_errors	SFSWAP	HGNC	ENSG00000061936				56	0	0	62	4	6.06061
ULK1	0	genome.wustl.edu	37	12	132399917	132399917	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	132399917	132399917	G	A	SNP	ULK1	ENST00000321867	human	ensembl	74_37	+1	known	silent	c.1560	p.T520	0.000	pirsf_Ser/Thr_kin_STPK_Ulk-1/2	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ser/Thr_kinase_C,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kin_STPK_Ulk-1/2,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ULK1	HGNC	ENSG00000177169				24	0	0	19	4	17.3913
GSG1	0	genome.wustl.edu	37	12	13243486	13243486	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	13243486	13243486	G	T	SNP	GSG1	ENST00000324458	human	ensembl	74_37	-1	known	missense	c.315	p.S105R	0.996	pfam_GSG-1	pfam_GSG-1	-	no_errors	GSG1	HGNC	ENSG00000111305				81	0	0	53	23	30.2632
EP400	0	genome.wustl.edu	37	12	132514593	132514593	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	132514593	132514593	C	A	SNP	EP400	ENST00000333577	human	ensembl	74_37	+1	known	missense	c.5752	p.L1918M	1.000	superfamily_P-loop_NTPase,pfscan_Helicase_C	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495				132	0	0	133	8	5.67376
EP400	0	genome.wustl.edu	37	12	132529374	132529374	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	132529374	132529374	C	T	SNP	EP400	ENST00000333577	human	ensembl	74_37	+1	known	silent	c.6768	p.D2256	0.997	NULL	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495				79	0	0	38	13	25.4902
POLE	0	genome.wustl.edu	37	12	133256788	133256788	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	133256788	133256788	C	T	SNP	POLE	ENST00000320574	human	ensembl	74_37	-1	known	silent	c.306	p.P102	0.029	pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom	pfam_DNA_pol_e_suA_C,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_3'-5'_exonuclease_PolB-like,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B	-	no_errors	POLE	HGNC	ENSG00000177084				130	0	0	108	6	5.26316
ANKLE2	0	genome.wustl.edu	37	12	133303972	133303972	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	133303972	133303972	G	A	SNP	ANKLE2	ENST00000357997	human	ensembl	74_37	-1	known	silent	c.2673	p.G891	0.000	NULL	pfam_LEM_dom,superfamily_LEM/LEM-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Ribosomal_L9/RNase_H1_N,pfscan_LEM_dom	-	no_errors	ANKLE2	HGNC	ENSG00000176915				11	0	0	6	5	45.4545
GOLGA3	0	genome.wustl.edu	37	12	133381403	133381403	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	133381403	133381403	G	A	SNP	GOLGA3	ENST00000204726	human	ensembl	74_37	-1	known	missense	c.1496	p.A499V	0.985	NULL	superfamily_Prefoldin	-	no_errors	GOLGA3	HGNC	ENSG00000090615				95	0	0	56	28	33.3333
GOLGA3	0	genome.wustl.edu	37	12	133385136	133385136	+	Splice_Site	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	133385136	133385136	C	T	SNP	GOLGA3	ENST00000204726	human	ensembl	74_37	-1	known	splice_site	c.520-1	e4-1	1.000	-	-	-	no_errors	GOLGA3	HGNC	ENSG00000090615				247	0	0	193	16	7.6555
ZNF140	0	genome.wustl.edu	37	12	133683228	133683228	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	133683228	133683228	A	C	SNP	ZNF140	ENST00000355557	human	ensembl	74_37	+1	known	missense	c.1365	p.E455D	0.810	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF140	HGNC	ENSG00000196387				93	0	0	61	15	19.7368
GRIN2B	0	genome.wustl.edu	37	12	13717182	13717182	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	13717182	13717182	G	A	SNP	GRIN2B	ENST00000609686	human	ensembl	74_37	-1	known	missense	c.2990	p.A997V	0.984	pfam_NMDAR2_C	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2B	HGNC	ENSG00000273079				65	0	0	32	13	28.8889
C12orf60	0	genome.wustl.edu	37	12	14976105	14976105	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	14976105	14976105	A	G	SNP	C12orf60	ENST00000330828	human	ensembl	74_37	+1	known	missense	c.236	p.D79G	0.000	NULL	NULL	-	no_errors	C12orf60	HGNC	ENSG00000182993				128	1	0.775194	92	28	23.3333
C12orf60	0	genome.wustl.edu	37	12	14976279	14976279	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	14976279	14976279	A	G	SNP	C12orf60	ENST00000330828	human	ensembl	74_37	+1	known	missense	c.410	p.E137G	0.588	NULL	NULL	-	no_errors	C12orf60	HGNC	ENSG00000182993				125	0	0	99	6	5.71429
C12orf60	0	genome.wustl.edu	37	12	14976485	14976485	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	14976485	14976485	T	G	SNP	C12orf60	ENST00000330828	human	ensembl	74_37	+1	known	missense	c.616	p.S206A	0.085	NULL	NULL	-	no_errors	C12orf60	HGNC	ENSG00000182993				76	0	0	67	22	24.7191
EPS8	0	genome.wustl.edu	37	12	15819381	15819381	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	15819381	15819381	C	T	SNP	EPS8	ENST00000281172	human	ensembl	74_37	-1	known	missense	c.592	p.A198T	0.971	NULL	pfam_PTB,pfam_SH3_domain,pfam_PTB/PI_dom,pfam_SH3_2,superfamily_SH3_domain,superfamily_SAM/pointed,smart_PTB/PI_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	EPS8	HGNC	ENSG00000151491				52	0	0	39	7	15.2174
LMO3	0	genome.wustl.edu	37	12	16704207	16704207	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	16704207	16704207	C	T	SNP	LMO3	ENST00000541295	human	ensembl	74_37	-1	known	silent	c.441	p.T147	0.993	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LMO3	HGNC	ENSG00000048540				106	0	0	87	8	8.42105
PIK3C2G	0	genome.wustl.edu	37	12	18491429	18491429	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	18491429	18491429	C	T	SNP	PIK3C2G	ENST00000538779	human	ensembl	74_37	+1	known	nonsense	c.1342	p.Q448*	1.000	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_Phox,pfam_PI3K_Ras-bd_dom,pfam_C2_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,superfamily_Phox,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_dom,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2G	HGNC	ENSG00000139144				135	0	0	83	31	27.193
PLEKHA5	0	genome.wustl.edu	37	12	19427794	19427794	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	19427794	19427794	G	A	SNP	PLEKHA5	ENST00000317589	human	ensembl	74_37	+1	known	missense	c.1172	p.R391H	0.884	NULL	pfam_Pleckstrin_homology,superfamily_WW_dom,smart_WW_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_WW_dom	-	no_errors	PLEKHA5	HGNC	ENSG00000052126				72	0	0	66	6	8.33333
CACNA2D4	0	genome.wustl.edu	37	12	2024074	2024074	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	2024074	2024074	G	A	SNP	CACNA2D4	ENST00000382722	human	ensembl	74_37	-1	known	silent	c.255	p.G85	0.259	NULL	pfam_VWA_N,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D4	HGNC	ENSG00000151062				75	0	0	65	7	9.72222
PYROXD1	0	genome.wustl.edu	37	12	21614991	21614991	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	21614991	21614991	C	T	SNP	PYROXD1	ENST00000240651	human	ensembl	74_37	+1	known	silent	c.930	p.C310	0.989	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,prints_FAD_pyr_nucl-diS_OxRdtase	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,prints_FAD_pyr_nucl-diS_OxRdtase	-	no_errors	PYROXD1	HGNC	ENSG00000121350				64	0	0	48	8	14.2857
RECQL	0	genome.wustl.edu	37	12	21630862	21630862	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	21630862	21630862	C	T	SNP	RECQL	ENST00000421138	human	ensembl	74_37	-1	known	missense	c.742	p.A248T	0.021	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd,tigrfam_DNA_helicase_ATP-dep_RecQ	pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_RQC_domain,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	RECQL	HGNC	ENSG00000004700				82	0	0	87	5	5.43478
ETNK1	0	genome.wustl.edu	37	12	22797200	22797200	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	22797200	22797200	G	A	SNP	ETNK1	ENST00000335148	human	ensembl	74_37	+1	known	missense	c.739	p.G247S	0.000	NULL	superfamily_Kinase-like_dom	-	no_errors	ETNK1	HGNC	ENSG00000139163				59	0	0	49	17	25.7576
SOX5	0	genome.wustl.edu	37	12	23687401	23687401	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	23687401	23687401	C	T	SNP	SOX5	ENST00000451604	human	ensembl	74_37	-1	known	missense	c.2044	p.A682T	0.998	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX5	HGNC	ENSG00000134532				45	0	0	18	6	25
SOX5	0	genome.wustl.edu	37	12	23689453	23689453	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	23689453	23689453	C	T	SNP	SOX5	ENST00000451604	human	ensembl	74_37	-1	known	missense	c.1922	p.R641H	1.000	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX5	HGNC	ENSG00000134532				74	0	0	57	8	12.3077
KRAS	0	genome.wustl.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	25398284	25398284	C	T	SNP	KRAS	ENST00000256078	human	ensembl	74_37	-1	known	missense	c.35	p.G12D	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	KRAS	HGNC	ENSG00000133703				29	0	0	21	6	22.2222
IQSEC3	0	genome.wustl.edu	37	12	266244	266244	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	266244	266244	G	A	SNP	IQSEC3	ENST00000326261	human	ensembl	74_37	+1	known	missense	c.2207	p.R736H	1.000	pfam_Sec7_dom,superfamily_Sec7_dom,smart_Sec7_dom,pfscan_Sec7_dom	pfam_Sec7_dom,superfamily_Sec7_dom,smart_Sec7_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7_dom	-	no_errors	IQSEC3	HGNC	ENSG00000120645				17	0	0	8	4	33.3333
CACNA1C	0	genome.wustl.edu	37	12	2788716	2788716	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	2788716	2788716	C	T	SNP	CACNA1C	ENST00000399634	human	ensembl	74_37	+1	known	missense	c.5198	p.A1733V	0.991	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1C	HGNC	ENSG00000151067				19	0	0	9	4	30.7692
FKBP4	0	genome.wustl.edu	37	12	2907922	2907922	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	2907922	2907922	C	T	SNP	FKBP4	ENST00000001008	human	ensembl	74_37	+1	known	silent	c.444	p.G148	0.174	NULL	pfam_PPIase_FKBP_dom,pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP4	HGNC	ENSG00000004478				133	0	0	104	27	20.6107
IPO8	0	genome.wustl.edu	37	12	30837276	30837276	+	Silent	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	30837276	30837276	A	G	SNP	IPO8	ENST00000256079	human	ensembl	74_37	-1	known	silent	c.282	p.D94	0.930	pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	pfam_Importin-beta_N,pfam_Cse1,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	IPO8	HGNC	ENSG00000133704				128	0	0	118	33	21.8543
TSPAN11	0	genome.wustl.edu	37	12	31116918	31116918	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	31116918	31116918	C	T	SNP	TSPAN11	ENST00000261177	human	ensembl	74_37	+1	known	missense	c.242	p.A81V	1.000	pfam_Tetraspanin/Peripherin,prints_Tetraspanin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN11	HGNC	ENSG00000110900				75	0	0	62	8	11.4286
SYT10	0	genome.wustl.edu	37	12	33538169	33538169	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	33538169	33538169	G	A	SNP	SYT10	ENST00000228567	human	ensembl	74_37	-1	known	missense	c.1135	p.R379C	0.980	superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT10	HGNC	ENSG00000110975				76	0	0	53	6	10.1695
KIF21A	0	genome.wustl.edu	37	12	39716590	39716590	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	39716590	39716590	C	T	SNP	KIF21A	ENST00000395670	human	ensembl	74_37	-1	known	missense	c.3551	p.G1184D	1.000	NULL	pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_P-loop_NTPase,superfamily_WD40_repeat_dom,superfamily_Prefoldin,superfamily_ARM-type_fold,smart_Kinesin_motor_dom,smart_WD40_repeat,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Kinesin_motor_dom	-	no_errors	KIF21A	HGNC	ENSG00000139116				162	0	0	114	39	25.4902
KIF21A	0	genome.wustl.edu	37	12	39726490	39726490	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	39726490	39726490	C	T	SNP	KIF21A	ENST00000395670	human	ensembl	74_37	-1	known	missense	c.2759	p.R920H	1.000	NULL	pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_P-loop_NTPase,superfamily_WD40_repeat_dom,superfamily_Prefoldin,superfamily_ARM-type_fold,smart_Kinesin_motor_dom,smart_WD40_repeat,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Kinesin_motor_dom	-	no_errors	KIF21A	HGNC	ENSG00000139116				79	0	0	66	14	17.5
SLC2A13	0	genome.wustl.edu	37	12	40345052	40345052	+	Silent	SNP	T	T	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	40345052	40345052	T	A	SNP	SLC2A13	ENST00000380858	human	ensembl	74_37	-1	putative	silent	c.1041	p.V347	1.000	superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt	-	no_errors	SLC2A13	HGNC	ENSG00000151229				50	0	0	49	13	20.9677
CNTN1	0	genome.wustl.edu	37	12	41408099	41408099	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	41408099	41408099	C	T	SNP	CNTN1	ENST00000347616	human	ensembl	74_37	+1	known	missense	c.2183	p.A728V	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN1	HGNC	ENSG00000018236				54	0	0	40	9	18.3673
KDM5A	0	genome.wustl.edu	37	12	416652	416652	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	416652	416652	G	A	SNP	KDM5A	ENST00000399788	human	ensembl	74_37	-1	known	missense	c.3898	p.L1300F	1.000	NULL	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_Znf_PHD-finger,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5A	HGNC	ENSG00000073614				39	0	0	37	12	24.4898
PDZRN4	0	genome.wustl.edu	37	12	41966851	41966851	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	41966851	41966851	A	G	SNP	PDZRN4	ENST00000402685	human	ensembl	74_37	+1	known	missense	c.2270	p.D757G	1.000	NULL	pfam_PDZ,superfamily_PDZ,superfamily_TRAF-like,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING	-	no_errors	PDZRN4	HGNC	ENSG00000165966				188	0	0	126	41	24.5509
PDZRN4	0	genome.wustl.edu	37	12	41967300	41967300	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	41967300	41967300	C	T	SNP	PDZRN4	ENST00000402685	human	ensembl	74_37	+1	known	nonsense	c.2719	p.R907*	1.000	NULL	pfam_PDZ,superfamily_PDZ,superfamily_TRAF-like,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING	-	no_errors	PDZRN4	HGNC	ENSG00000165966				152	0	0	130	9	6.47482
PRICKLE1	0	genome.wustl.edu	37	12	42858589	42858589	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	42858589	42858589	G	A	SNP	PRICKLE1	ENST00000345127	human	ensembl	74_37	-1	known	missense	c.1247	p.T416M	0.999	NULL	pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	PRICKLE1	HGNC	ENSG00000139174				54	0	0	43	12	21.8182
PRICKLE1	0	genome.wustl.edu	37	12	42858777	42858777	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	42858777	42858777	C	T	SNP	PRICKLE1	ENST00000345127	human	ensembl	74_37	-1	known	silent	c.1059	p.S353	0.174	NULL	pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	PRICKLE1	HGNC	ENSG00000139174				168	1	0.591716	87	49	36.0294
PRICKLE1	0	genome.wustl.edu	37	12	42860064	42860064	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	42860064	42860064	C	T	SNP	PRICKLE1	ENST00000345127	human	ensembl	74_37	-1	known	missense	c.707	p.R236H	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	PRICKLE1	HGNC	ENSG00000139174				76	0	0	35	13	27.0833
ADAMTS20	0	genome.wustl.edu	37	12	43826209	43826209	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	43826209	43826209	G	A	SNP	ADAMTS20	ENST00000389420	human	ensembl	74_37	-1	known	silent	c.2994	p.G998	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS20	HGNC	ENSG00000173157				115	0	0	75	35	31.8182
ADAMTS20	0	genome.wustl.edu	37	12	43944883	43944883	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	43944883	43944883	G	A	SNP	ADAMTS20	ENST00000389420	human	ensembl	74_37	-1	known	silent	c.282	p.T94	0.995	pfam_Peptidase_M12B_N	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS20	HGNC	ENSG00000173157				51	0	0	36	3	7.69231
PUS7L	0	genome.wustl.edu	37	12	44130389	44130389	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	44130389	44130389	C	T	SNP	PUS7L	ENST00000344862	human	ensembl	74_37	-1	known	missense	c.1520	p.R507H	1.000	pfam_PsdUridine_synth_TruD,superfamily_PsdUridine_synth_cat_dom,pirsf_PsdUridine_synth_TruD_euk,pfscan_PsdUridine_synth_TruD_insert,tigrfam_PsdUridine_synth_TruD	pfam_PsdUridine_synth_TruD,superfamily_PsdUridine_synth_cat_dom,pirsf_PsdUridine_synth_TruD_euk,pfscan_PsdUridine_synth_TruD_insert,tigrfam_PsdUridine_synth_TruD	-	no_errors	PUS7L	HGNC	ENSG00000129317				155	0	0	141	8	5.36913
NELL2	0	genome.wustl.edu	37	12	44926433	44926433	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	44926433	44926433	A	G	SNP	NELL2	ENST00000437801	human	ensembl	74_37	-1	known	missense	c.1885	p.Y629H	1.000	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_VWF_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_VWC_out,smart_VWF_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	NELL2	HGNC	ENSG00000184613				106	0	0	113	7	5.83333
ANO6	0	genome.wustl.edu	37	12	45822925	45822925	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	45822925	45822925	C	T	SNP	ANO6	ENST00000320560	human	ensembl	74_37	+1	known	missense	c.2564	p.A855V	0.903	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO6	HGNC	ENSG00000177119				70	0	0	71	6	7.79221
ARID2	0	genome.wustl.edu	37	12	46246417	46246417	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	46246417	46246417	G	A	SNP	ARID2	ENST00000334344	human	ensembl	74_37	+1	known	missense	c.4511	p.R1504Q	1.000	NULL	pfam_ARID/BRIGHT_DNA-bd,pfam_DNA-bd_RFX,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID2	HGNC	ENSG00000189079				147	0	0	101	9	8.18182
SLC38A1	0	genome.wustl.edu	37	12	46602891	46602891	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	46602891	46602891	T	C	SNP	SLC38A1	ENST00000398637	human	ensembl	74_37	-1	known	missense	c.334	p.T112A	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC38A1	HGNC	ENSG00000111371				57	0	0	49	5	9.25926
RPAP3	0	genome.wustl.edu	37	12	48073291	48073291	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	48073291	48073291	C	T	SNP	RPAP3	ENST00000005386	human	ensembl	74_37	-1	known	silent	c.1272	p.P424	0.028	NULL	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	RPAP3	HGNC	ENSG00000005175				38	0	0	29	9	23.6842
HDAC7	0	genome.wustl.edu	37	12	48188645	48188645	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	48188645	48188645	G	A	SNP	HDAC7	ENST00000380610	human	ensembl	74_37	-1	known	silent	c.1407	p.G469	0.005	pirsf_Histone_deAcase_II_euk	pfam_His_deacetylse_dom,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC7	HGNC	ENSG00000061273				48	0	0	25	11	30.5556
VDR	0	genome.wustl.edu	37	12	48240547	48240547	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	48240547	48240547	G	A	SNP	VDR	ENST00000229022	human	ensembl	74_37	-1	known	missense	c.800	p.A267V	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_VitD_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	VDR	HGNC	ENSG00000111424				79	0	0	53	28	34.5679
GALNT8	0	genome.wustl.edu	37	12	4835984	4835984	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	4835984	4835984	G	A	SNP	GALNT8	ENST00000252318	human	ensembl	74_37	+1	known	silent	c.498	p.T166	0.002	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT8	HGNC	ENSG00000130035				106	0	0	64	15	18.9873
TMEM106C	0	genome.wustl.edu	37	12	48361942	48361942	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	48361942	48361942	G	A	SNP	TMEM106C	ENST00000429772	human	ensembl	74_37	+1	known	missense	c.683	p.G228D	1.000	pfam_DUF1356_TMEM106	pfam_DUF1356_TMEM106	-	no_errors	TMEM106C	HGNC	ENSG00000134291				80	0	0	55	5	8.33333
COL2A1	0	genome.wustl.edu	37	12	48369182	48369182	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	48369182	48369182	G	A	SNP	COL2A1	ENST00000380518	human	ensembl	74_37	-1	known	silent	c.3804	p.S1268	1.000	smart_Fib_collagen_C	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL2A1	HGNC	ENSG00000139219				45	0	0	27	15	35.7143
SENP1	0	genome.wustl.edu	37	12	48477397	48477397	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	48477397	48477397	G	A	SNP	SENP1	ENST00000004980	human	ensembl	74_37	-1	known	nonsense	c.529	p.R177*	1.000	NULL	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP1	HGNC	ENSG00000079387				54	0	0	53	12	18.4615
PFKM	0	genome.wustl.edu	37	12	48534513	48534513	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	48534513	48534513	G	A	SNP	PFKM	ENST00000312352	human	ensembl	74_37	+1	known	silent	c.1200	p.S400	0.000	superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,tigrfam_6-phosphofructokinase_euk	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,prints_Phosphofructokinase,tigrfam_6-phosphofructokinase_euk	-	no_errors	PFKM	HGNC	ENSG00000152556				75	0	0	38	17	30.9091
ASB8	0	genome.wustl.edu	37	12	48543596	48543596	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	48543596	48543596	G	A	SNP	ASB8	ENST00000317697	human	ensembl	74_37	-1	known	silent	c.420	p.S140	0.507	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	-	no_errors	ASB8	HGNC	ENSG00000177981				79	0	0	50	13	20.6349
ANP32D	0	genome.wustl.edu	37	12	48866816	48866816	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	48866816	48866816	C	T	SNP	ANP32D	ENST00000266594	human	ensembl	74_37	+1	known	silent	c.369	p.C123	0.997	NULL	NULL	-	no_errors	ANP32D	HGNC	ENSG00000139223				84	0	0	92	5	5.15464
KCNA6	0	genome.wustl.edu	37	12	4919925	4919925	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	4919925	4919925	C	T	SNP	KCNA6	ENST00000280684	human	ensembl	74_37	+1	known	missense	c.718	p.P240S	0.000	prints_K_chnl_volt-dep_Kv1.6	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.6,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA6	HGNC	ENSG00000151079				88	0	0	67	5	6.94444
KCNA6	0	genome.wustl.edu	37	12	4920535	4920535	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	4920535	4920535	C	T	SNP	KCNA6	ENST00000280684	human	ensembl	74_37	+1	known	missense	c.1328	p.A443V	1.000	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.6,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA6	HGNC	ENSG00000151079				74	0	0	50	18	26.4706
DDX23	0	genome.wustl.edu	37	12	49227064	49227064	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	49227064	49227064	C	T	SNP	DDX23	ENST00000308025	human	ensembl	74_37	-1	known	missense	c.1799	p.R600H	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX23	HGNC	ENSG00000174243				108	0	0	78	5	6.0241
PRKAG1	0	genome.wustl.edu	37	12	49397360	49397360	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	49397360	49397360	T	C	SNP	PRKAG1	ENST00000548065	human	ensembl	74_37	-1	known	missense	c.722	p.Y241C	1.000	pfam_CBS_dom,smart_CBS_dom	pfam_CBS_dom,smart_CBS_dom	-	no_errors	PRKAG1	HGNC	ENSG00000181929				69	0	0	52	10	16.129
TUBA1C	0	genome.wustl.edu	37	12	49666675	49666675	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	49666675	49666675	C	T	SNP	TUBA1C	ENST00000301072	human	ensembl	74_37	+1	known	missense	c.1015	p.R339C	1.000	pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tub_FtsZ_C,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Beta_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Beta_tubulin,prints_Delta_tubulin	-	no_errors	TUBA1C	HGNC	ENSG00000167553				103	0	0	62	21	25.3012
TROAP	0	genome.wustl.edu	37	12	49719532	49719532	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	49719532	49719532	T	C	SNP	TROAP	ENST00000551192	human	ensembl	74_37	+1	known	missense	c.400	p.C134R	0.031	NULL	NULL	-	no_errors	TROAP	HGNC	ENSG00000135451				36	0	0	22	11	33.3333
TROAP	0	genome.wustl.edu	37	12	49722962	49722962	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	49722962	49722962	C	T	SNP	TROAP	ENST00000257909	human	ensembl	74_37	+1	known	missense	c.1039	p.R347W	0.092	NULL	NULL	-	no_errors	TROAP	HGNC	ENSG00000135451				254	0	0	197	13	6.19048
MCRS1	0	genome.wustl.edu	37	12	49952676	49952676	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	49952676	49952676	G	A	SNP	MCRS1	ENST00000357123	human	ensembl	74_37	-1	known	missense	c.1291	p.P431S	1.000	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MCRS1	HGNC	ENSG00000187778				64	0	0	35	19	35.1852
FAM186B	0	genome.wustl.edu	37	12	49994713	49994713	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	49994713	49994713	G	A	SNP	FAM186B	ENST00000257894	human	ensembl	74_37	-1	known	missense	c.710	p.A237V	0.943	NULL	NULL	-	no_errors	FAM186B	HGNC	ENSG00000135436				66	0	0	43	18	29.5082
AQP6	0	genome.wustl.edu	37	12	50367132	50367132	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	50367132	50367132	C	T	SNP	AQP6	ENST00000315520	human	ensembl	74_37	+1	known	missense	c.176	p.A59V	1.000	pfam_MIP,superfamily_Aquaporin-like,tigrfam_MIP	pfam_MIP,superfamily_Aquaporin-like,prints_MIP,prints_Aquaporin_6,tigrfam_MIP	-	no_errors	AQP6	HGNC	ENSG00000086159				83	0	0	73	15	17.0455
LIMA1	0	genome.wustl.edu	37	12	50594644	50594644	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	50594644	50594644	G	A	SNP	LIMA1	ENST00000394943	human	ensembl	74_37	-1	known	silent	c.888	p.G296	0.981	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LIMA1	HGNC	ENSG00000050405				183	0	0	159	12	7.01754
LARP4	0	genome.wustl.edu	37	12	50856385	50856385	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	50856385	50856385	G	A	SNP	LARP4	ENST00000429001	human	ensembl	74_37	+1	known	missense	c.1373	p.R458Q	1.000	NULL	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP4	HGNC	ENSG00000161813				87	0	0	53	24	31.1688
DIP2B	0	genome.wustl.edu	37	12	51128878	51128878	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	51128878	51128878	G	A	SNP	DIP2B	ENST00000301180	human	ensembl	74_37	+1	known	missense	c.4066	p.A1356T	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2B	HGNC	ENSG00000066084				86	0	0	60	6	9.09091
DIP2B	0	genome.wustl.edu	37	12	51138606	51138606	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	51138606	51138606	T	C	SNP	DIP2B	ENST00000301180	human	ensembl	74_37	+1	known	missense	c.4715	p.V1572A	1.000	NULL	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2B	HGNC	ENSG00000066084				87	0	0	65	4	5.7971
KCNA5	0	genome.wustl.edu	37	12	5154014	5154014	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	5154014	5154014	G	A	SNP	KCNA5	ENST00000252321	human	ensembl	74_37	+1	known	missense	c.701	p.R234H	0.969	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,pfam_PKD1_2_channel,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.5,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA5	HGNC	ENSG00000130037				86	0	0	58	6	9.375
DAZAP2	0	genome.wustl.edu	37	12	51636174	51636174	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	51636174	51636174	G	A	SNP	DAZAP2	ENST00000549555	human	ensembl	74_37	+1	known	missense	c.362	p.R121H	1.000	NULL	pfam_DAZ_assoc-2	-	no_errors	DAZAP2	HGNC	ENSG00000183283				287	0	0	218	73	25.0859
BIN2	0	genome.wustl.edu	37	12	51693445	51693445	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	51693445	51693445	G	A	SNP	BIN2	ENST00000267012	human	ensembl	74_37	-1	known	silent	c.462	p.H154	1.000	pfam_BAR_dom,smart_BAR_dom,pfscan_BAR_dom,prints_Amphiphysin	pfam_BAR_dom,smart_BAR_dom,pfscan_BAR_dom,prints_Amphiphysin	-	no_errors	BIN2	HGNC	ENSG00000110934				161	0	0	102	40	28.169
GALNT6	0	genome.wustl.edu	37	12	51757930	51757930	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	51757930	51757930	G	A	SNP	GALNT6	ENST00000356317	human	ensembl	74_37	-1	known	missense	c.1024	p.R342C	1.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT6	HGNC	ENSG00000139629				98	0	0	73	24	24.7423
SLC4A8	0	genome.wustl.edu	37	12	51856118	51856118	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	51856118	51856118	G	A	SNP	SLC4A8	ENST00000453097	human	ensembl	74_37	+1	known	missense	c.1126	p.A376T	1.000	pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A8	HGNC	ENSG00000050438				157	0	0	148	8	5.12821
ACVR1B	0	genome.wustl.edu	37	12	52385715	52385715	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	52385715	52385715	C	T	SNP	ACVR1B	ENST00000257963	human	ensembl	74_37	+1	known	nonsense	c.1330	p.R444*	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ACVR1B	HGNC	ENSG00000135503				170	0	0	130	32	19.7531
KRT86	0	genome.wustl.edu	37	12	52695732	52695732	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	52695732	52695732	C	T	SNP	KRT86	ENST00000293525	human	ensembl	74_37	+1	known	missense	c.32	p.A11V	0.976	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT86	HGNC	ENSG00000170442				57	0	0	37	11	22.9167
KRT75	0	genome.wustl.edu	37	12	52822241	52822241	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	52822241	52822241	G	A	SNP	KRT75	ENST00000252245	human	ensembl	74_37	-1	known	missense	c.1181	p.A394V	1.000	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT75	HGNC	ENSG00000170454				45	0	0	16	5	23.8095
KRT6C	0	genome.wustl.edu	37	12	52863220	52863220	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	52863220	52863220	G	A	SNP	KRT6C	ENST00000252250	human	ensembl	74_37	-1	known	silent	c.1434	p.G478	0.006	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT6C	HGNC	ENSG00000170465				53	0	0	33	11	25
KRT6C	0	genome.wustl.edu	37	12	52864995	52864995	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	52864995	52864995	A	T	SNP	KRT6C	ENST00000252250	human	ensembl	74_37	-1	known	missense	c.998	p.I333N	1.000	pfam_IF,superfamily_Prefoldin	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT6C	HGNC	ENSG00000170465				216	0	0	154	60	28.0374
KRT71	0	genome.wustl.edu	37	12	52940272	52940272	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	52940272	52940272	C	T	SNP	KRT71	ENST00000267119	human	ensembl	74_37	-1	known	missense	c.1123	p.A375T	0.883	pfam_IF,superfamily_Prefoldin	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT71	HGNC	ENSG00000139648				34	0	0	23	6	20.6897
KRT8	0	genome.wustl.edu	37	12	53292668	53292668	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	53292668	53292668	C	T	SNP	KRT8	ENST00000293308	human	ensembl	74_37	-1	known	missense	c.997	p.A333T	1.000	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT8	HGNC	ENSG00000170421				47	0	0	31	9	22.5
TENC1	0	genome.wustl.edu	37	12	53446255	53446255	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	53446255	53446255	G	A	SNP	TENC1	ENST00000314276	human	ensembl	74_37	+1	known	silent	c.231	p.T77	0.368	smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH2,smart_PTB/PI_dom,pfscan_SH2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TENC1	HGNC	ENSG00000111077				187	0	0	137	41	23.0337
SP7	0	genome.wustl.edu	37	12	53723085	53723085	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	53723085	53723085	C	T	SNP	SP7	ENST00000303846	human	ensembl	74_37	-1	known	silent	c.141	p.P47	0.939	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP7	HGNC	ENSG00000170374				153	0	0	124	37	22.9814
HOXC10	0	genome.wustl.edu	37	12	54379097	54379097	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	54379097	54379097	G	A	SNP	HOXC10	ENST00000303460	human	ensembl	74_37	+1	known	silent	c.54	p.A18	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXC10	HGNC	ENSG00000180818				125	0	0	63	29	31.5217
HOXC10	0	genome.wustl.edu	37	12	54379557	54379557	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	54379557	54379557	G	A	SNP	HOXC10	ENST00000303460	human	ensembl	74_37	+1	known	missense	c.514	p.A172T	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXC10	HGNC	ENSG00000180818				32	0	0	25	9	26.4706
HOXC9	0	genome.wustl.edu	37	12	54396240	54396240	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	54396240	54396240	G	A	SNP	HOXC9	ENST00000303450	human	ensembl	74_37	+1	known	missense	c.565	p.A189T	1.000	superfamily_Homeodomain-like,pirsf_Homeobox_Hox9	pfam_Hox9_activation_N,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pirsf_Homeobox_Hox9,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXC9	HGNC	ENSG00000180806				106	0	0	62	22	26.1905
HOXC6	0	genome.wustl.edu	37	12	54423569	54423569	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	54423569	54423569	G	A	SNP	HOXC6	ENST00000243108	human	ensembl	74_37	+1	known	silent	c.531	p.A177	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXC6	HGNC	ENSG00000197757				101	0	0	66	21	24.1379
HOXC5	0	genome.wustl.edu	37	12	54428168	54428168	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	54428168	54428168	G	T	SNP	HOXC5	ENST00000312492	human	ensembl	74_37	+1	known	missense	c.561	p.E187D	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa,prints_Homeobox_antennapedia	-	no_errors	HOXC5	HGNC	ENSG00000172789				128	0	0	92	31	25.2033
NEUROD4	0	genome.wustl.edu	37	12	55420335	55420335	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	55420335	55420335	C	T	SNP	NEUROD4	ENST00000242994	human	ensembl	74_37	+1	known	missense	c.112	p.P38S	0.000	pirsf_TF_bHLH_NeuroD	pfam_Neurogenic_DUF,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pirsf_TF_bHLH_NeuroD,pfscan_bHLH_dom	-	no_errors	NEUROD4	HGNC	ENSG00000123307				65	0	0	50	6	10.7143
NEUROD4	0	genome.wustl.edu	37	12	55420539	55420539	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	55420539	55420539	G	A	SNP	NEUROD4	ENST00000242994	human	ensembl	74_37	+1	known	missense	c.316	p.A106T	1.000	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pirsf_TF_bHLH_NeuroD,pfscan_bHLH_dom	pfam_Neurogenic_DUF,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pirsf_TF_bHLH_NeuroD,pfscan_bHLH_dom	-	no_errors	NEUROD4	HGNC	ENSG00000123307				108	0	0	82	9	9.89011
OR6C3	0	genome.wustl.edu	37	12	55726283	55726283	+	Silent	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	55726283	55726283	T	C	SNP	OR6C3	ENST00000379667	human	ensembl	74_37	+1	known	silent	c.799	p.L267	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6C3	HGNC	ENSG00000205329				70	0	0	44	13	22.807
OR6C65	0	genome.wustl.edu	37	12	55794672	55794672	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	55794672	55794672	C	T	SNP	OR6C65	ENST00000379665	human	ensembl	74_37	+1	known	silent	c.360	p.R120	0.860	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR6C65	HGNC	ENSG00000205328				127	0	0	96	33	25.5814
OR6C65	0	genome.wustl.edu	37	12	55794777	55794777	+	Silent	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	55794777	55794777	T	C	SNP	OR6C65	ENST00000379665	human	ensembl	74_37	+1	known	silent	c.465	p.F155	0.000	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR6C65	HGNC	ENSG00000205328				171	0	0	110	37	25.1701
DGKA	0	genome.wustl.edu	37	12	56346910	56346910	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	56346910	56346910	C	T	SNP	DGKA	ENST00000331886	human	ensembl	74_37	+1	known	missense	c.2029	p.R677C	0.996	pfam_Diacylglycerol_kin_accessory,smart_Diacylglycerol_kin_accessory	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_EF_hand_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_EF_hand_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKA	HGNC	ENSG00000065357				89	0	0	64	19	22.8916
ERBB3	0	genome.wustl.edu	37	12	56478854	56478854	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	56478854	56478854	G	A	SNP	ERBB3	ENST00000267101	human	ensembl	74_37	+1	known	missense	c.310	p.V104M	0.994	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_EGF_rcpt_L	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Furin-like_Cys-rich_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB3	HGNC	ENSG00000065361				137	0	0	124	10	7.46269
COQ10A	0	genome.wustl.edu	37	12	56661571	56661571	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	56661571	56661571	G	A	SNP	COQ10A	ENST00000546544	human	ensembl	74_37	+1	known	missense	c.77	p.G26D	0.001	NULL	pfam_Polyket_cyc	-	no_errors	COQ10A	HGNC	ENSG00000135469				136	0	0	81	43	34.6774
PAN2	0	genome.wustl.edu	37	12	56716264	56716264	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	56716264	56716264	G	A	SNP	PAN2	ENST00000425394	human	ensembl	74_37	-1	known	silent	c.2652	p.G884	0.015	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Exonuclease_RNaseT/DNA_pol3,pfam_Peptidase_C19/C67,superfamily_RNaseH-like_dom,superfamily_WD40_repeat_dom,smart_Exonuclease,pfscan_Peptidase_C19/C67	-	no_errors	PAN2	HGNC	ENSG00000135473				102	0	0	67	19	22.093
TIMELESS	0	genome.wustl.edu	37	12	56811784	56811784	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	56811784	56811784	C	T	SNP	TIMELESS	ENST00000553532	human	ensembl	74_37	-1	known	missense	c.3463	p.A1155T	0.000	pfam_TIMELESS_C	pfam_TIMELESS_C,pfam_Timeless	-	no_errors	TIMELESS	HGNC	ENSG00000111602				120	0	0	102	31	23.3083
BAZ2A	0	genome.wustl.edu	37	12	56992460	56992460	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	56992460	56992460	C	T	SNP	BAZ2A	ENST00000551812	human	ensembl	74_37	-1	known	missense	c.5660	p.R1887H	1.000	superfamily_Bromodomain,smart_Bromodomain	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_dom,superfamily_Znf_FYVE_PHD,smart_Methyl_CpG_DNA-bd,smart_AT_hook_DNA-bd_motif,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2A	HGNC	ENSG00000076108				33	0	0	40	8	16.6667
ZBTB39	0	genome.wustl.edu	37	12	57397343	57397343	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	57397343	57397343	G	A	SNP	ZBTB39	ENST00000300101	human	ensembl	74_37	-1	known	silent	c.1359	p.C453	0.986	smart_Znf_C2H2-like	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB39	HGNC	ENSG00000166860				57	0	0	35	13	27.0833
LRP1	0	genome.wustl.edu	37	12	57548147	57548147	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	57548147	57548147	C	T	SNP	LRP1	ENST00000243077	human	ensembl	74_37	+1	known	missense	c.998	p.A333V	0.998	smart_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384				49	0	0	34	4	10.5263
LRP1	0	genome.wustl.edu	37	12	57595585	57595585	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	57595585	57595585	C	T	SNP	LRP1	ENST00000243077	human	ensembl	74_37	+1	known	silent	c.10491	p.D3497	0.922	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384				80	0	0	58	15	20.5479
LRP1	0	genome.wustl.edu	37	12	57605717	57605717	+	Silent	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	57605717	57605717	C	A	SNP	LRP1	ENST00000243077	human	ensembl	74_37	+1	known	silent	c.13266	p.A4422	1.000	NULL	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384				63	0	0	40	10	20
NXPH4	0	genome.wustl.edu	37	12	57619402	57619402	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	57619402	57619402	G	A	SNP	NXPH4	ENST00000349394	human	ensembl	74_37	+1	known	missense	c.799	p.A267T	0.997	pfam_NXPH/NXPE,pirsf_Neurexophilin	pfam_NXPH/NXPE,pirsf_Neurexophilin	-	no_errors	NXPH4	HGNC	ENSG00000182379				33	0	0	17	10	37.037
ARHGEF25	0	genome.wustl.edu	37	12	58009072	58009072	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	58009072	58009072	C	T	SNP	ARHGEF25	ENST00000333972	human	ensembl	74_37	+1	known	missense	c.1130	p.T377M	0.980	superfamily_DH-domain	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF25	HGNC	ENSG00000240771				47	0	0	27	10	27.027
OS9	0	genome.wustl.edu	37	12	58090083	58090083	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	58090083	58090083	G	A	SNP	OS9	ENST00000315970	human	ensembl	74_37	+1	known	missense	c.506	p.R169H	1.000	pfam_PRKCSH	pfam_PRKCSH,superfamily_Man6P_isomerase_rcpt-bd_dom	-	no_errors	OS9	HGNC	ENSG00000135506				75	0	0	39	20	33.8983
AVIL	0	genome.wustl.edu	37	12	58197057	58197057	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	58197057	58197057	G	A	SNP	AVIL	ENST00000257861	human	ensembl	74_37	-1	known	silent	c.1935	p.D645	0.998	pfam_Gelsolin_dom,smart_Villin/Gelsolin,prints_Villin/Gelsolin	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin/Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Villin/Gelsolin	-	no_errors	AVIL	HGNC	ENSG00000135407				175	0	0	124	39	23.9264
SLC16A7	0	genome.wustl.edu	37	12	60168512	60168512	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	60168512	60168512	G	A	SNP	SLC16A7	ENST00000261187	human	ensembl	74_37	+1	known	missense	c.436	p.A146T	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt	-	no_errors	SLC16A7	HGNC	ENSG00000118596				70	0	0	64	7	9.85915
VWF	0	genome.wustl.edu	37	12	6127784	6127784	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	6127784	6127784	C	T	SNP	VWF	ENST00000261405	human	ensembl	74_37	-1	known	silent	c.4800	p.A1600	0.007	pirsf_VWF,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pirsf_VWF,pfam_VWF_type-D,pfam_VWF_A,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_VWF_A,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_A,pfscan_VWF_C	-	no_errors	VWF	HGNC	ENSG00000110799				52	0	0	31	10	24.3902
PPM1H	0	genome.wustl.edu	37	12	63182064	63182064	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	63182064	63182064	C	T	SNP	PPM1H	ENST00000228705	human	ensembl	74_37	-1	known	missense	c.811	p.A271T	1.000	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	-	no_errors	PPM1H	HGNC	ENSG00000111110				20	0	0	21	4	16
AVPR1A	0	genome.wustl.edu	37	12	63543935	63543935	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	63543935	63543935	G	A	SNP	AVPR1A	ENST00000299178	human	ensembl	74_37	-1	known	missense	c.682	p.P228S	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_DUF1856,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Vprs_V1A_rcpt,prints_Vasoprsn_rcpt,prints_GPCR_Rhodpsn	-	no_errors	AVPR1A	HGNC	ENSG00000166148				58	0	0	44	16	26.6667
AVPR1A	0	genome.wustl.edu	37	12	63544099	63544099	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	63544099	63544099	G	A	SNP	AVPR1A	ENST00000299178	human	ensembl	74_37	-1	known	missense	c.518	p.A173V	0.990	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_DUF1856,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Vprs_V1A_rcpt,prints_Vasoprsn_rcpt,prints_GPCR_Rhodpsn	-	no_errors	AVPR1A	HGNC	ENSG00000166148				39	0	0	20	11	35.4839
SRGAP1	0	genome.wustl.edu	37	12	64377886	64377886	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	64377886	64377886	C	T	SNP	SRGAP1	ENST00000355086	human	ensembl	74_37	+1	known	missense	c.227	p.A76V	1.000	pfam_FCH_dom,smart_FCH_dom,pfscan_FCH_dom	pfam_RhoGAP_dom,pfam_FCH_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Fuc/Ara_isomerase_C,smart_FCH_dom,smart_RhoGAP_dom,smart_SH3_domain,pfscan_FCH_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	SRGAP1	HGNC	ENSG00000196935				156	0	0	123	40	24.5399
SRGAP1	0	genome.wustl.edu	37	12	64505708	64505708	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	64505708	64505708	G	T	SNP	SRGAP1	ENST00000355086	human	ensembl	74_37	+1	known	missense	c.2086	p.D696Y	1.000	NULL	pfam_RhoGAP_dom,pfam_FCH_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Fuc/Ara_isomerase_C,smart_FCH_dom,smart_RhoGAP_dom,smart_SH3_domain,pfscan_FCH_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	SRGAP1	HGNC	ENSG00000196935				86	0	0	68	20	22.7273
XPOT	0	genome.wustl.edu	37	12	64812728	64812728	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	64812728	64812728	A	G	SNP	XPOT	ENST00000332707	human	ensembl	74_37	+1	known	missense	c.343	p.T115A	1.000	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	XPOT	HGNC	ENSG00000184575				84	0	0	106	6	5.35714
XPOT	0	genome.wustl.edu	37	12	64812733	64812733	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	64812733	64812733	G	A	SNP	XPOT	ENST00000332707	human	ensembl	74_37	+1	known	silent	c.348	p.E116	0.939	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	XPOT	HGNC	ENSG00000184575				85	0	0	104	8	7.14286
B4GALNT3	0	genome.wustl.edu	37	12	654106	654106	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	654106	654106	G	A	SNP	B4GALNT3	ENST00000266383	human	ensembl	74_37	+1	known	missense	c.506	p.R169H	1.000	pfam_PA14,smart_PA14	pfam_PA14,pfam_Chond_GalNAc,smart_PA14	-	no_errors	B4GALNT3	HGNC	ENSG00000139044				51	0	0	42	28	40
B4GALNT3	0	genome.wustl.edu	37	12	657408	657408	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	657408	657408	C	T	SNP	B4GALNT3	ENST00000266383	human	ensembl	74_37	+1	known	silent	c.798	p.N266	0.949	pfam_PA14,smart_PA14	pfam_PA14,pfam_Chond_GalNAc,smart_PA14	-	no_errors	B4GALNT3	HGNC	ENSG00000139044				74	0	0	57	18	24
HMGA2	0	genome.wustl.edu	37	12	66308662	66308662	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	66308662	66308662	C	T	SNP	HMGA2	ENST00000536545	human	ensembl	74_37	+1	putative	missense	c.412	p.P138S	0.022	NULL	pfam_AT_hook_DNA-bd_motif,smart_AT_hook_DNA-bd_motif,prints_HMGI/HMGY,prints_AT_hook-like	-	no_errors	HMGA2	HGNC	ENSG00000149948				28	0	0	15	4	21.0526
HELB	0	genome.wustl.edu	37	12	66703905	66703905	+	Silent	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	66703905	66703905	T	C	SNP	HELB	ENST00000247815	human	ensembl	74_37	+1	known	silent	c.1197	p.D399	0.000	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	HELB	HGNC	ENSG00000127311				227	0	0	157	52	24.8804
CHD4	0	genome.wustl.edu	37	12	6711240	6711240	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	6711240	6711240	G	A	SNP	CHD4	ENST00000309577	human	ensembl	74_37	-1	known	silent	c.324	p.S108	1.000	NULL	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642				68	0	0	31	15	32.6087
NINJ2	0	genome.wustl.edu	37	12	675296	675296	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	675296	675296	C	T	SNP	NINJ2	ENST00000305108	human	ensembl	74_37	-1	known	missense	c.220	p.A74T	1.000	pfam_Ninjurin	pfam_Ninjurin	-	no_errors	NINJ2	HGNC	ENSG00000171840				31	0	0	17	8	32
CAND1	0	genome.wustl.edu	37	12	67699777	67699777	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	67699777	67699777	C	T	SNP	CAND1	ENST00000545606	human	ensembl	74_37	+1	known	missense	c.2329	p.R777C	1.000	superfamily_ARM-type_fold	pfam_TATA-bd_TIP120,pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	CAND1	HGNC	ENSG00000111530				132	1	0.75188	90	19	17.4312
IFNG	0	genome.wustl.edu	37	12	68551823	68551823	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	68551823	68551823	A	G	SNP	IFNG	ENST00000229135	human	ensembl	74_37	-1	known	missense	c.236	p.L79P	0.997	pfam_Interferon_gamma,superfamily_4_helix_cytokine-like_core,pirsf_Interferon_gamma	pfam_Interferon_gamma,superfamily_4_helix_cytokine-like_core,pirsf_Interferon_gamma	-	no_errors	IFNG	HGNC	ENSG00000111537				66	0	0	42	13	23.6364
RAP1B	0	genome.wustl.edu	37	12	69042508	69042508	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	69042508	69042508	C	T	SNP	RAP1B	ENST00000250559	human	ensembl	74_37	+1	known	missense	c.4	p.R2C	1.000	pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAP1B	HGNC	ENSG00000127314				43	0	0	30	8	21.0526
CPSF6	0	genome.wustl.edu	37	12	69651601	69651601	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	69651601	69651601	C	T	SNP	CPSF6	ENST00000266679	human	ensembl	74_37	+1	known	missense	c.610	p.R204W	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CPSF6	HGNC	ENSG00000111605				131	0	0	97	7	6.73077
BEST3	0	genome.wustl.edu	37	12	70087555	70087555	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	70087555	70087555	G	A	SNP	BEST3	ENST00000330891	human	ensembl	74_37	-1	known	missense	c.380	p.T127M	1.000	pfam_Bestrophin/UPF0187	pfam_Bestrophin/UPF0187	-	no_errors	BEST3	HGNC	ENSG00000127325				62	0	0	31	15	32.6087
ENO2	0	genome.wustl.edu	37	12	7025874	7025874	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	7025874	7025874	C	T	SNP	ENO2	ENST00000229277	human	ensembl	74_37	+1	known	missense	c.221	p.A74V	0.994	pfam_Enolase_N,pirsf_Enolase,tigrfam_Enolase	pfam_Enolase_C,pfam_Enolase_N,pfam_MeAsp_NH4-lyase_C,pirsf_Enolase,prints_Enolase,tigrfam_Enolase	-	no_errors	ENO2	HGNC	ENSG00000111674				85	0	0	66	9	12
CNOT2	0	genome.wustl.edu	37	12	70735907	70735907	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	70735907	70735907	C	T	SNP	CNOT2	ENST00000229195	human	ensembl	74_37	+1	known	missense	c.1199	p.A400V	1.000	pfam_NOT	pfam_NOT	-	no_errors	CNOT2	HGNC	ENSG00000111596				173	0	0	133	12	8.27586
PTPRB	0	genome.wustl.edu	37	12	70964877	70964877	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	70964877	70964877	C	T	SNP	PTPRB	ENST00000334414	human	ensembl	74_37	-1	known	missense	c.3299	p.R1100H	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Ricin_B_lectin,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRB	HGNC	ENSG00000127329				73	0	0	50	19	27.5362
TSPAN8	0	genome.wustl.edu	37	12	71531970	71531970	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	71531970	71531970	G	A	SNP	TSPAN8	ENST00000247829	human	ensembl	74_37	-1	known	missense	c.302	p.A101V	0.000	pfam_Tetraspanin/Peripherin,prints_Tetraspanin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN8	HGNC	ENSG00000127324				195	0	0	165	11	6.25
TPH2	0	genome.wustl.edu	37	12	72416230	72416230	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	72416230	72416230	C	T	SNP	TPH2	ENST00000333850	human	ensembl	74_37	+1	known	missense	c.1120	p.R374W	1.000	pfam_Aromatic-AA_hydroxylase_C,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,tigrfam_Trp_5_mOase	pfam_Aromatic-AA_hydroxylase_C,pfam_ACT_dom,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,prints_Aromatic-AA_hydroxylase_C,tigrfam_Trp_5_mOase	-	no_errors	TPH2	HGNC	ENSG00000139287				83	0	0	57	4	6.55738
RBP5	0	genome.wustl.edu	37	12	7280857	7280857	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	7280857	7280857	G	A	SNP	RBP5	ENST00000266560	human	ensembl	74_37	-1	known	silent	c.231	p.S77	0.000	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	-	no_errors	RBP5	HGNC	ENSG00000139194				52	0	0	37	15	28.8462
TRHDE	0	genome.wustl.edu	37	12	72863686	72863686	+	Silent	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	72863686	72863686	T	C	SNP	TRHDE	ENST00000261180	human	ensembl	74_37	+1	known	silent	c.1329	p.C443	1.000	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	TRHDE	HGNC	ENSG00000072657				74	0	0	49	15	23.4375
CLSTN3	0	genome.wustl.edu	37	12	7288865	7288865	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	7288865	7288865	G	A	SNP	CLSTN3	ENST00000266546	human	ensembl	74_37	+1	known	missense	c.806	p.R269H	1.000	NULL	pfam_Cadherin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CLSTN3	HGNC	ENSG00000139182				85	0	0	62	7	10.1449
CD163L1	0	genome.wustl.edu	37	12	7528533	7528533	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	7528533	7528533	G	A	SNP	CD163L1	ENST00000313599	human	ensembl	74_37	-1	known	missense	c.2449	p.R817C	0.060	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_SRCR	-	no_errors	CD163L1	HGNC	ENSG00000177675				118	0	0	80	29	26.6055
CAPS2	0	genome.wustl.edu	37	12	75676076	75676076	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	75676076	75676076	T	C	SNP	CAPS2	ENST00000409445	human	ensembl	74_37	-1	known	missense	c.1624	p.I542V	1.000	NULL	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	CAPS2	HGNC	ENSG00000180881				91	0	0	75	24	24.2424
BBS10	0	genome.wustl.edu	37	12	76740999	76740999	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	76740999	76740999	G	A	SNP	BBS10	ENST00000393262	human	ensembl	74_37	-1	known	nonsense	c.766	p.R256*	0.365	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom	-	no_errors	BBS10	HGNC	ENSG00000179941				48	0	0	24	5	17.2414
ZDHHC17	0	genome.wustl.edu	37	12	77244672	77244672	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	77244672	77244672	C	T	SNP	ZDHHC17	ENST00000334822	human	ensembl	74_37	+1	known	silent	c.1806	p.C602	1.000	NULL	pfam_Ankyrin_rpt,pfam_Znf_DHHC_palmitoyltrfase,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Znf_DHHC_palmitoyltrfase,prints_Ankyrin_rpt	-	no_errors	ZDHHC17	HGNC	ENSG00000186908				116	0	0	110	21	16.0305
NAV3	0	genome.wustl.edu	37	12	78444840	78444840	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	78444840	78444840	A	G	SNP	NAV3	ENST00000397909	human	ensembl	74_37	+1	known	missense	c.2429	p.D810G	1.000	NULL	pfam_CH-domain,pfam_ATPase_AAA_core,superfamily_CH-domain,superfamily_P-loop_NTPase,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV3	HGNC	ENSG00000067798				65	0	0	36	16	30.7692
PPP1R12A	0	genome.wustl.edu	37	12	80211266	80211266	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	80211266	80211266	C	T	SNP	PPP1R12A	ENST00000261207	human	ensembl	74_37	-1	known	missense	c.1147	p.A383T	0.992	pirsf_Pase-1_reg_su_12A/B/C_euk	pirsf_Pase-1_reg_su_12A/B/C_euk,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	PPP1R12A	HGNC	ENSG00000058272				30	0	0	30	4	11.7647
METTL25	0	genome.wustl.edu	37	12	82870436	82870436	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	82870436	82870436	T	A	SNP	METTL25	ENST00000248306	human	ensembl	74_37	+1	known	missense	c.1586	p.I529N	0.000	NULL	NULL	-	no_errors	METTL25	HGNC	ENSG00000127720				54	0	0	35	20	36.3636
AICDA	0	genome.wustl.edu	37	12	8759609	8759609	+	Splice_Site	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	8759609	8759609	C	T	SNP	AICDA	ENST00000229335	human	ensembl	74_37	-1	known	splice_site	c.9-1	e2-1	1.000	-	-	-	no_errors	AICDA	HGNC	ENSG00000111732				25	0	0	19	5	20.8333
MKRN9P	0	genome.wustl.edu	37	12	88176943	88176943	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	88176943	88176943	G	A	SNP	MKRN9P	ENST00000599191	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MKRN9P	HGNC	ENSG00000258128				30	0	0	14	4	22.2222
TMTC3	0	genome.wustl.edu	37	12	88547228	88547228	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	88547228	88547228	A	G	SNP	TMTC3	ENST00000266712	human	ensembl	74_37	+1	known	missense	c.350	p.N117S	0.038	NULL	pfam_TPR_2,pfam_TPR_1,pfam_DUF1736,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC3	HGNC	ENSG00000139324				72	0	0	50	11	18.0328
RIMKLB	0	genome.wustl.edu	37	12	8866509	8866509	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	8866509	8866509	G	A	SNP	RIMKLB	ENST00000357529	human	ensembl	74_37	+1	known	missense	c.47	p.R16H	1.000	tigrfam_RpS6_RimK/Lys_biosynth_LsyX	pfam_ATP-grasp_RimK-type,pfam_GSHS_ATP-bd,pfam_ATP-grasp_DUF201-type,pfscan_ATP-grasp,tigrfam_RpS6_RimK/Lys_biosynth_LsyX	-	no_errors	RIMKLB	HGNC	ENSG00000166532				81	0	0	57	7	10.9375
KITLG	0	genome.wustl.edu	37	12	88910187	88910187	+	Silent	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	88910187	88910187	A	G	SNP	KITLG	ENST00000228280	human	ensembl	74_37	-1	known	silent	c.444	p.I148	0.961	pfam_SCF,superfamily_4_helix_cytokine-like_core,pirsf_SCF	pfam_SCF,superfamily_4_helix_cytokine-like_core,pirsf_SCF	-	no_errors	KITLG	HGNC	ENSG00000049130				147	0	0	125	7	5.30303
ATP2B1	0	genome.wustl.edu	37	12	89992941	89992941	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	89992941	89992941	G	A	SNP	ATP2B1	ENST00000261173	human	ensembl	74_37	-1	known	missense	c.3304	p.R1102C	1.000	NULL	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B1	HGNC	ENSG00000070961				95	0	0	69	29	29.5918
A2ML1	0	genome.wustl.edu	37	12	9000230	9000230	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	9000230	9000230	C	T	SNP	A2ML1	ENST00000299698	human	ensembl	74_37	+1	known	missense	c.1769	p.A590V	0.888	pfam_A2M_N_2	pfam_A2M_comp,pfam_Macroglobln_a2,pfam_A2M_N_2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_SV_autoAg,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	A2ML1	HGNC	ENSG00000166535				112	0	0	61	24	28.2353
ATP2B1	0	genome.wustl.edu	37	12	90049651	90049651	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	90049651	90049651	C	T	SNP	ATP2B1	ENST00000261173	human	ensembl	74_37	-1	known	missense	c.13	p.A5T	1.000	NULL	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B1	HGNC	ENSG00000070961				110	0	0	66	18	21.4286
LUM	0	genome.wustl.edu	37	12	91498015	91498015	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	91498015	91498015	C	T	SNP	LUM	ENST00000266718	human	ensembl	74_37	-1	known	missense	c.944	p.R315H	0.025	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LUM	HGNC	ENSG00000139329				78	0	0	55	14	20.2899
A2M	0	genome.wustl.edu	37	12	9229462	9229462	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	9229462	9229462	C	T	SNP	A2M	ENST00000318602	human	ensembl	74_37	-1	known	missense	c.3422	p.G1141D	0.005	pfam_A2M_comp,superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,superfamily_Beta-lactam/transpept-like,superfamily_Cupredoxin	-	no_errors	A2M	HGNC	ENSG00000175899				137	0	0	89	18	16.8224
A2M	0	genome.wustl.edu	37	12	9268379	9268379	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	9268379	9268379	C	T	SNP	A2M	ENST00000318602	human	ensembl	74_37	-1	known	missense	c.67	p.A23T	0.594	NULL	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,superfamily_Beta-lactam/transpept-like,superfamily_Cupredoxin	-	no_errors	A2M	HGNC	ENSG00000175899				87	0	0	39	16	29.0909
CLLU1OS	0	genome.wustl.edu	37	12	92814871	92814871	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	92814871	92814871	G	A	SNP	CLLU1OS	ENST00000378487	human	ensembl	74_37	-1	known	missense	c.221	p.A74V	0.000	NULL	NULL	-	no_errors	CLLU1OS	HGNC	ENSG00000205057				200	1	0.497512	169	44	20.6573
C12orf74	0	genome.wustl.edu	37	12	93100872	93100872	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	93100872	93100872	C	T	SNP	C12orf74	ENST00000397833	human	ensembl	74_37	+1	known	silent	c.465	p.G155	0.000	NULL	NULL	-	no_errors	C12orf74	HGNC	ENSG00000214215				34	0	0	24	12	33.3333
EEA1	0	genome.wustl.edu	37	12	93236266	93236266	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	93236266	93236266	A	C	SNP	EEA1	ENST00000322349	human	ensembl	74_37	-1	known	missense	c.890	p.V297G	0.997	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Znf_C2H2	-	no_errors	EEA1	HGNC	ENSG00000102189				34	0	0	27	3	10
TMCC3	0	genome.wustl.edu	37	12	94972205	94972205	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	94972205	94972205	C	T	SNP	TMCC3	ENST00000261226	human	ensembl	74_37	-1	known	missense	c.1096	p.A366T	1.000	pfam_Predicted_TM_coiled-coil_2	pfam_Predicted_TM_coiled-coil_2	-	no_errors	TMCC3	HGNC	ENSG00000057704				69	0	0	55	10	15.3846
LTA4H	0	genome.wustl.edu	37	12	96409440	96409440	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	96409440	96409440	C	T	SNP	LTA4H	ENST00000228740	human	ensembl	74_37	-1	known	missense	c.980	p.R327H	1.000	pfam_Peptidase_M1_N,tigrfam_Leukotriene_A4_hydrolase	pfam_Peptidase_M1_N,pfam_Peptidase_M1_C,superfamily_ARM-type_fold,prints_Peptidase_M1_N,tigrfam_Leukotriene_A4_hydrolase	-	no_errors	LTA4H	HGNC	ENSG00000111144				103	0	0	86	5	5.49451
WNK1	0	genome.wustl.edu	37	12	966394	966394	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	966394	966394	T	C	SNP	WNK1	ENST00000530271	human	ensembl	74_37	+1	known	missense	c.1379	p.I460T	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK1	HGNC	ENSG00000060237				81	0	0	54	21	28
ELK3	0	genome.wustl.edu	37	12	96640801	96640801	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	96640801	96640801	G	A	SNP	ELK3	ENST00000228741	human	ensembl	74_37	+1	known	silent	c.291	p.A97	0.158	NULL	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ELK3	HGNC	ENSG00000111145				54	0	0	27	8	22.8571
C12orf55	0	genome.wustl.edu	37	12	97051724	97051724	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	97051724	97051724	G	A	SNP	C12orf55	ENST00000524981	human	ensembl	74_37	+1	putative	missense	c.5165	p.G1722D	1.000	NULL	superfamily_Fibronectin_type3	-	no_errors	C12orf55	HGNC	ENSG00000188596				160	0	0	174	11	5.94595
ANKS1B	0	genome.wustl.edu	37	12	99166772	99166772	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	99166772	99166772	G	A	SNP	ANKS1B	ENST00000549315	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.001	-	-	-	no_errors	ANKS1B	HGNC	ENSG00000185046				40	0	0	26	17	39.5349
TM9SF2	0	genome.wustl.edu	37	13	100172322	100172322	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	100172322	100172322	G	A	SNP	TM9SF2	ENST00000376387	human	ensembl	74_37	+1	known	missense	c.272	p.R91H	1.000	pfam_EMP70	pfam_EMP70	-	no_errors	TM9SF2	HGNC	ENSG00000125304				70	0	0	52	12	18.75
TM9SF2	0	genome.wustl.edu	37	13	100204534	100204534	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	100204534	100204534	C	T	SNP	TM9SF2	ENST00000376387	human	ensembl	74_37	+1	known	missense	c.1442	p.S481F	1.000	pfam_EMP70	pfam_EMP70	-	no_errors	TM9SF2	HGNC	ENSG00000125304				158	0	0	96	46	32.3944
PCCA	0	genome.wustl.edu	37	13	100909900	100909900	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	100909900	100909900	G	A	SNP	PCCA	ENST00000376285	human	ensembl	74_37	+1	known	missense	c.689	p.R230H	1.000	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_RimK-type,pfam_ATP-grasp_carboxylate-amine,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_RimK-type,pfam_ATP-grasp_carboxylate-amine,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_Biotin_lipoyl	-	no_errors	PCCA	HGNC	ENSG00000175198				41	0	0	19	6	24
NALCN	0	genome.wustl.edu	37	13	101720344	101720344	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	101720344	101720344	C	T	SNP	NALCN	ENST00000251127	human	ensembl	74_37	-1	known	missense	c.4372	p.E1458K	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	NALCN	HGNC	ENSG00000102452				79	0	0	32	18	36
NALCN	0	genome.wustl.edu	37	13	102029307	102029307	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	102029307	102029307	C	T	SNP	NALCN	ENST00000251127	human	ensembl	74_37	-1	known	missense	c.476	p.R159Q	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom	-	no_errors	NALCN	HGNC	ENSG00000102452				70	0	0	46	17	26.9841
ITGBL1	0	genome.wustl.edu	37	13	102359114	102359114	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	102359114	102359114	A	G	SNP	ITGBL1	ENST00000376180	human	ensembl	74_37	+1	known	missense	c.1141	p.T381A	0.016	pfam_EGF_extracell,smart_EG-like_dom	pfam_EGF_extracell,smart_EG-like_dom	-	no_errors	ITGBL1	HGNC	ENSG00000198542				60	0	0	38	9	19.1489
FGF14	0	genome.wustl.edu	37	13	102568812	102568812	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	102568812	102568812	G	A	SNP	FGF14	ENST00000376143	human	ensembl	74_37	-1	known	missense	c.184	p.R62W	1.000	NULL	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam	-	no_errors	FGF14	HGNC	ENSG00000102466				46	0	0	29	8	21.6216
TPP2	0	genome.wustl.edu	37	13	103286332	103286332	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	103286332	103286332	C	T	SNP	TPP2	ENST00000376065	human	ensembl	74_37	+1	known	missense	c.1277	p.A426V	1.000	pfam_Peptidase_S8/S53_dom,superfamily_Peptidase_S8/S53_dom	pfam_Peptidase_S8/S53_dom,pfam_Peptidase_S8A_TPPII,superfamily_Peptidase_S8/S53_dom,prints_Peptidase_S8_subtilisin-rel	-	no_errors	TPP2	HGNC	ENSG00000134900				56	0	0	41	16	28.0702
KDELC1	0	genome.wustl.edu	37	13	103445716	103445716	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	103445716	103445716	G	A	SNP	KDELC1	ENST00000376004	human	ensembl	74_37	-1	known	missense	c.647	p.A216V	1.000	pfam_LipoPS_modifying	pfam_LipoPS_modifying,pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,smart_LipoPS_modifying,pfscan_Filamin/ABP280_repeat-like	-	no_errors	KDELC1	HGNC	ENSG00000134901				100	0	0	62	16	20.5128
MYO16	0	genome.wustl.edu	37	13	109792683	109792683	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	109792683	109792683	C	T	SNP	MYO16	ENST00000356711	human	ensembl	74_37	+1	known	missense	c.4057	p.R1353C	0.928	NULL	pfam_Myosin_head_motor_dom,pfam_Ankyrin_rpt,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Myosin_head_motor_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO16	HGNC	ENSG00000041515				33	0	0	19	4	17.3913
COL4A1	0	genome.wustl.edu	37	13	110827668	110827668	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	110827668	110827668	C	T	SNP	COL4A1	ENST00000375820	human	ensembl	74_37	-1	known	missense	c.3095	p.G1032D	0.997	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A1	HGNC	ENSG00000187498				49	0	0	29	11	27.5
COL4A1	0	genome.wustl.edu	37	13	110839556	110839556	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	110839556	110839556	C	T	SNP	COL4A1	ENST00000375820	human	ensembl	74_37	-1	known	missense	c.1657	p.G553S	0.997	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A1	HGNC	ENSG00000187498				59	0	0	35	16	31.3725
COL4A1	0	genome.wustl.edu	37	13	110859767	110859767	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	110859767	110859767	C	T	SNP	COL4A1	ENST00000375820	human	ensembl	74_37	-1	known	missense	c.763	p.A255T	0.001	NULL	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A1	HGNC	ENSG00000187498				93	0	0	61	8	11.5942
COL4A2	0	genome.wustl.edu	37	13	111130478	111130478	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	111130478	111130478	C	T	SNP	COL4A2	ENST00000360467	human	ensembl	74_37	+1	known	missense	c.2554	p.P852S	0.945	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A2	HGNC	ENSG00000134871				17	0	0	17	5	22.7273
PROZ	0	genome.wustl.edu	37	13	113826043	113826043	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	113826043	113826043	C	T	SNP	PROZ	ENST00000375547	human	ensembl	74_37	+1	known	missense	c.827	p.A276V	0.000	pirsf_Pept_S1A_FX,pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pirsf_Pept_S1A_FX,pfam_Peptidase_S1,pfam_GLA_domain,pfam_EG-like_dom,superfamily_Trypsin-like_Pept_dom,superfamily_GLA_domain,smart_GLA_domain,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Peptidase_S1,prints_GLA_domain,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Peptidase_S1	-	no_errors	PROZ	HGNC	ENSG00000126231				48	0	0	35	9	20.4545
LAMP1	0	genome.wustl.edu	37	13	113975905	113975905	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	113975905	113975905	G	A	SNP	LAMP1	ENST00000332556	human	ensembl	74_37	+1	known	missense	c.977	p.R326Q	0.858	pfam_Lysosome-assoc_membr_glycop	pfam_Lysosome-assoc_membr_glycop,prints_Lysosome-assoc_membr_glycop	-	no_errors	LAMP1	HGNC	ENSG00000185896				53	0	0	41	11	21.1538
GAS6	0	genome.wustl.edu	37	13	114526405	114526405	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	114526405	114526405	G	A	SNP	GAS6	ENST00000357389	human	ensembl	74_37	-1	known	silent	c.1725	p.A575	0.000	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,pfam_GLA_domain,superfamily_ConA-like_lec_gl_sf,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Laminin_G,prints_GLA_domain	-	no_errors	GAS6	HGNC	ENSG00000183087				59	0	0	29	14	32.5581
TPTE2	0	genome.wustl.edu	37	13	20056655	20056655	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	20056655	20056655	T	C	SNP	TPTE2	ENST00000382977	human	ensembl	74_37	-1	known	missense	c.152	p.E51G	0.001	NULL	pfam_Tensin_phosphatase_C2-dom,pfam_Ion_trans_dom,pfam_Dual-sp_phosphatase_cat-dom,superfamily_C2_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TPTE2	HGNC	ENSG00000132958				54	0	0	45	4	8.16327
TPTE2	0	genome.wustl.edu	37	13	20056687	20056687	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	20056687	20056687	A	T	SNP	TPTE2	ENST00000382977	human	ensembl	74_37	-1	known	missense	c.120	p.S40R	0.000	NULL	pfam_Tensin_phosphatase_C2-dom,pfam_Ion_trans_dom,pfam_Dual-sp_phosphatase_cat-dom,superfamily_C2_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TPTE2	HGNC	ENSG00000132958				46	0	0	44	8	15.3846
PSPC1	0	genome.wustl.edu	37	13	20279899	20279899	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	20279899	20279899	G	A	SNP	PSPC1	ENST00000338910	human	ensembl	74_37	-1	known	missense	c.1289	p.A430V	1.000	NULL	pfam_RRM_dom,pfam_NOPS,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PSPC1	HGNC	ENSG00000121390				88	0	0	58	10	14.7059
IFT88	0	genome.wustl.edu	37	13	21189979	21189979	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	21189979	21189979	C	T	SNP	IFT88	ENST00000319980	human	ensembl	74_37	+1	known	missense	c.1187	p.A396V	1.000	NULL	pfam_TPR_1,pfam_TPR_2,pfam_OMP_IML2_mit/TPR_39,smart_TPR_repeat,smart_Sel1-like,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	IFT88	HGNC	ENSG00000032742				70	0	0	81	5	5.81395
LATS2	0	genome.wustl.edu	37	13	21555688	21555688	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	21555688	21555688	G	A	SNP	LATS2	ENST00000382592	human	ensembl	74_37	-1	known	missense	c.2582	p.A861V	1.000	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	LATS2	HGNC	ENSG00000150457				56	0	0	38	7	15.5556
FGF9	0	genome.wustl.edu	37	13	22246290	22246290	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	22246290	22246290	G	A	SNP	FGF9	ENST00000382353	human	ensembl	74_37	+1	known	missense	c.239	p.G80D	1.000	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam	-	no_errors	FGF9	HGNC	ENSG00000102678				93	0	0	43	20	31.746
SACS	0	genome.wustl.edu	37	13	23906034	23906034	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	23906034	23906034	G	A	SNP	SACS	ENST00000382292	human	ensembl	74_37	-1	known	missense	c.11981	p.A3994V	0.999	NULL	pfam_HEPN,pfam_Ubiquitin_dom,superfamily_HATPase_ATP-bd,superfamily_DnaJ_domain,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_domain,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835				121	0	0	99	9	8.33333
SACS	0	genome.wustl.edu	37	13	23908271	23908271	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	23908271	23908271	C	T	SNP	SACS	ENST00000382292	human	ensembl	74_37	-1	known	nonsense	c.9744	p.W3248*	1.000	NULL	pfam_HEPN,pfam_Ubiquitin_dom,superfamily_HATPase_ATP-bd,superfamily_DnaJ_domain,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_domain,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835				104	0	0	67	11	14.1026
SACS	0	genome.wustl.edu	37	13	23909914	23909914	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	23909914	23909914	G	A	SNP	SACS	ENST00000382292	human	ensembl	74_37	-1	known	missense	c.8101	p.P2701S	1.000	superfamily_HATPase_ATP-bd	pfam_HEPN,pfam_Ubiquitin_dom,superfamily_HATPase_ATP-bd,superfamily_DnaJ_domain,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_domain,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835				85	0	0	64	20	23.8095
SACS	0	genome.wustl.edu	37	13	23942607	23942607	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	23942607	23942607	C	T	SNP	SACS	ENST00000382292	human	ensembl	74_37	-1	known	silent	c.279	p.T93	0.773	superfamily_HATPase_ATP-bd	pfam_HEPN,pfam_Ubiquitin_dom,superfamily_HATPase_ATP-bd,superfamily_DnaJ_domain,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_domain,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835				43	0	0	22	12	35.2941
TNFRSF19	0	genome.wustl.edu	37	13	24190110	24190110	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	24190110	24190110	C	T	SNP	TNFRSF19	ENST00000382258	human	ensembl	74_37	+1	known	silent	c.285	p.C95	0.288	smart_TNFR/NGFR_Cys_rich_reg	smart_TNFR/NGFR_Cys_rich_reg,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_19	-	no_errors	TNFRSF19	HGNC	ENSG00000127863				79	0	0	49	17	25.7576
SPATA13	0	genome.wustl.edu	37	13	24860366	24860366	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	24860366	24860366	C	T	SNP	SPATA13	ENST00000382108	human	ensembl	74_37	+1	known	silent	c.2316	p.G772	0.997	superfamily_SH3_domain	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	SPATA13	HGNC	ENSG00000182957				125	0	0	119	16	11.8519
SPATA13	0	genome.wustl.edu	37	13	24871865	24871865	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	24871865	24871865	A	C	SNP	SPATA13	ENST00000382108	human	ensembl	74_37	+1	known	missense	c.3575	p.K1192T	0.910	NULL	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	SPATA13	HGNC	ENSG00000182957				37	0	0	30	3	9.09091
PARP4	0	genome.wustl.edu	37	13	25008533	25008533	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	25008533	25008533	C	A	SNP	PARP4	ENST00000381989	human	ensembl	74_37	-1	known	missense	c.4746	p.E1582D	0.996	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_VIT,pfam_VWF_A,pfam_BRCT_dom,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_BRCT_dom,smart_BRCT_dom,smart_VIT,smart_VWF_A,pfscan_BRCT_dom,pfscan_VWF_A,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP4	HGNC	ENSG00000102699				70	0	0	69	8	10.3896
ENSG00000243008	0	genome.wustl.edu	37	13	25144829	25144829	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	25144829	25144829	G	A	SNP	ENSG00000243008	ENST00000453498	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	RP11-556N21.1	Clone_based_vega_gene	ENSG00000243008				38	0	0	19	9	32.1429
CENPJ	0	genome.wustl.edu	37	13	25480954	25480954	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	25480954	25480954	C	T	SNP	CENPJ	ENST00000381884	human	ensembl	74_37	-1	known	missense	c.1222	p.E408K	0.997	NULL	pfam_Tcp10_C_dom	-	no_errors	CENPJ	HGNC	ENSG00000151849				58	0	0	45	15	25
PABPC3	0	genome.wustl.edu	37	13	25671495	25671495	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	25671495	25671495	G	A	SNP	PABPC3	ENST00000281589	human	ensembl	74_37	+1	known	missense	c.1159	p.A387T	1.000	tigrfam_PABP_1234	pfam_RRM_dom,pfam_PABP_HYD,superfamily_PABP_HYD,smart_RRM_dom,smart_RRM_dom_euk,smart_PABP_HYD,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC3	HGNC	ENSG00000151846				104	0	0	99	22	18.1818
ATP8A2	0	genome.wustl.edu	37	13	26144987	26144987	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	26144987	26144987	T	A	SNP	ATP8A2	ENST00000381655	human	ensembl	74_37	+1	known	missense	c.1556	p.I519N	1.000	superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP8A2	HGNC	ENSG00000132932				66	0	0	40	4	9.09091
RNF6	0	genome.wustl.edu	37	13	26792703	26792703	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	26792703	26792703	G	A	SNP	RNF6	ENST00000346166	human	ensembl	74_37	-1	known	silent	c.234	p.G78	0.991	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF6	HGNC	ENSG00000127870				172	0	0	137	9	6.16438
GPR12	0	genome.wustl.edu	37	13	27333601	27333601	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	27333601	27333601	C	T	SNP	GPR12	ENST00000381436	human	ensembl	74_37	-1	known	missense	c.364	p.A122T	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPR_3/6/12_orphan,prints_GPR12,prints_GPCR_Rhodpsn	-	no_errors	GPR12	HGNC	ENSG00000132975				96	0	0	88	6	6.38298
FLT3	0	genome.wustl.edu	37	13	28592704	28592704	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	28592704	28592704	G	A	SNP	FLT3	ENST00000380982	human	ensembl	74_37	-1	known	missense	c.2441	p.A814V	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	FLT3	HGNC	ENSG00000122025				79	0	0	51	4	7.27273
FLT1	0	genome.wustl.edu	37	13	29002038	29002038	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	29002038	29002038	G	A	SNP	FLT1	ENST00000282397	human	ensembl	74_37	-1	known	missense	c.1127	p.A376V	0.519	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom,prints_VEGFR1_rcpt	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_VEGFR1_rcpt	-	no_errors	FLT1	HGNC	ENSG00000102755				103	0	0	78	5	6.0241
HMGB1	0	genome.wustl.edu	37	13	31037572	31037572	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	31037572	31037572	C	T	SNP	HMGB1	ENST00000468384	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	HMGB1	HGNC	ENSG00000189403				41	0	0	36	7	16.2791
RXFP2	0	genome.wustl.edu	37	13	32355867	32355867	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	32355867	32355867	C	T	SNP	RXFP2	ENST00000298386	human	ensembl	74_37	+1	known	missense	c.845	p.S282L	0.022	smart_Leu-rich_rpt_typical-subtyp	pfam_GPCR_Rhodpsn,pfam_Leu-rich_rpt,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Leu-rich_rpt_typical-subtyp,pfscan_LDrepeatLR_classA_rpt,pfscan_GPCR_Rhodpsn_7TM,prints_Relaxin_rcpt,prints_GPCR_Rhodpsn,prints_Gphrmn_rcpt_fam	-	no_errors	RXFP2	HGNC	ENSG00000133105				40	0	0	41	12	22.6415
FRY	0	genome.wustl.edu	37	13	32747622	32747622	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	32747622	32747622	G	A	SNP	FRY	ENST00000380250	human	ensembl	74_37	+1	known	missense	c.2270	p.R757H	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FRY	HGNC	ENSG00000073910				103	0	0	74	32	30.1887
FRY	0	genome.wustl.edu	37	13	32821627	32821627	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	32821627	32821627	C	T	SNP	FRY	ENST00000380250	human	ensembl	74_37	+1	known	silent	c.6996	p.F2332	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FRY	HGNC	ENSG00000073910				74	0	0	76	8	9.52381
BRCA2	0	genome.wustl.edu	37	13	32912807	32912807	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	32912807	32912807	G	A	SNP	BRCA2	ENST00000380152	human	ensembl	74_37	+1	known	missense	c.4315	p.A1439T	0.868	pfam_BRCA2_repeat,pirsf_BRCA2,pfscan_BRCA2_repeat	pfam_DNA_recomb/repair_BRCA2_hlx,pfam_BRCA2_repeat,pfam_BRCA2_OB_3,pfam_BRCA2_OB_1,pfam_Tower,superfamily_DNA_recomb/repair_BRCA2_hlx,superfamily_NA-bd_OB-fold,pirsf_BRCA2,pfscan_BRCA2_repeat	-	no_errors	BRCA2	HGNC	ENSG00000139618				133	0	0	76	24	24
BRCA2	0	genome.wustl.edu	37	13	32944628	32944628	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	32944628	32944628	G	A	SNP	BRCA2	ENST00000380152	human	ensembl	74_37	+1	known	silent	c.8421	p.S2807	1.000	superfamily_NA-bd_OB-fold,pirsf_BRCA2	pfam_DNA_recomb/repair_BRCA2_hlx,pfam_BRCA2_repeat,pfam_BRCA2_OB_3,pfam_BRCA2_OB_1,pfam_Tower,superfamily_DNA_recomb/repair_BRCA2_hlx,superfamily_NA-bd_OB-fold,pirsf_BRCA2,pfscan_BRCA2_repeat	-	no_errors	BRCA2	HGNC	ENSG00000139618				88	0	0	47	22	31.8841
BRCA2	0	genome.wustl.edu	37	13	32953551	32953551	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	32953551	32953551	C	T	SNP	BRCA2	ENST00000380152	human	ensembl	74_37	+1	known	missense	c.8852	p.A2951V	1.000	superfamily_NA-bd_OB-fold,pirsf_BRCA2	pfam_DNA_recomb/repair_BRCA2_hlx,pfam_BRCA2_repeat,pfam_BRCA2_OB_3,pfam_BRCA2_OB_1,pfam_Tower,superfamily_DNA_recomb/repair_BRCA2_hlx,superfamily_NA-bd_OB-fold,pirsf_BRCA2,pfscan_BRCA2_repeat	-	no_errors	BRCA2	HGNC	ENSG00000139618				114	0	0	72	32	30.7692
N4BP2L2	0	genome.wustl.edu	37	13	33091905	33091905	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	33091905	33091905	G	A	SNP	N4BP2L2	ENST00000511143	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	N4BP2L2	HGNC	ENSG00000244754				28	0	0	27	5	15.625
PDS5B	0	genome.wustl.edu	37	13	33344393	33344393	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	33344393	33344393	C	T	SNP	PDS5B	ENST00000315596	human	ensembl	74_37	+1	known	silent	c.3759	p.G1253	0.885	NULL	superfamily_ARM-type_fold	-	no_errors	PDS5B	HGNC	ENSG00000083642				131	0	0	95	29	23.3871
KL	0	genome.wustl.edu	37	13	33635904	33635904	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	33635904	33635904	C	T	SNP	KL	ENST00000380099	human	ensembl	74_37	+1	known	silent	c.2688	p.N896	0.970	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	KL	HGNC	ENSG00000133116				83	0	0	70	21	23.0769
STARD13	0	genome.wustl.edu	37	13	33686932	33686932	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	33686932	33686932	C	T	SNP	STARD13	ENST00000336934	human	ensembl	74_37	-1	known	silent	c.2418	p.T806	0.046	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_START_lipid-bd_dom,pfam_RhoGAP_dom,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,superfamily_SAM/pointed,smart_RhoGAP_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom,pfscan_RhoGAP_dom	-	no_errors	STARD13	HGNC	ENSG00000133121				127	0	0	68	20	22.7273
CCDC169-SOHLH2	0	genome.wustl.edu	37	13	36767810	36767810	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	36767810	36767810	C	T	SNP	CCDC169-SOHLH2	ENST00000511166	human	ensembl	74_37	-1	known	missense	c.609	p.M203I	0.999	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	CCDC169-SOHLH2	HGNC	ENSG00000250709				122	0	0	59	22	27.1605
SPG20	0	genome.wustl.edu	37	13	36878523	36878523	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	36878523	36878523	C	T	SNP	SPG20	ENST00000355182	human	ensembl	74_37	-1	known	silent	c.1980	p.E660	0.029	NULL	pfam_Senescence/spartin,pfam_MIT,smart_MIT	-	no_errors	SPG20	HGNC	ENSG00000133104				198	0	0	118	42	26.25
CCNA1	0	genome.wustl.edu	37	13	37014191	37014191	+	Silent	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	37014191	37014191	A	G	SNP	CCNA1	ENST00000255465	human	ensembl	74_37	+1	known	silent	c.969	p.Q323	0.720	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	pfam_Cyclin_N,pfam_Cyclin_C-dom,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	-	no_errors	CCNA1	HGNC	ENSG00000133101				99	0	0	68	18	20.9302
FOXO1	0	genome.wustl.edu	37	13	41134254	41134254	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	41134254	41134254	C	T	SNP	FOXO1	ENST00000379561	human	ensembl	74_37	-1	known	silent	c.1374	p.A458	0.739	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXO1	HGNC	ENSG00000150907				76	0	0	41	10	19.6078
KBTBD6	0	genome.wustl.edu	37	13	41705170	41705170	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	41705170	41705170	C	T	SNP	KBTBD6	ENST00000379485	human	ensembl	74_37	-1	known	missense	c.1478	p.R493H	1.000	NULL	pfam_BTB_POZ,pfam_BACK,pfam_Kelch_1,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KBTBD6	HGNC	ENSG00000165572				88	0	0	63	6	8.69565
KBTBD6	0	genome.wustl.edu	37	13	41705357	41705357	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	41705357	41705357	C	T	SNP	KBTBD6	ENST00000379485	human	ensembl	74_37	-1	known	missense	c.1291	p.A431T	1.000	pfam_Kelch_1	pfam_BTB_POZ,pfam_BACK,pfam_Kelch_1,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KBTBD6	HGNC	ENSG00000165572				127	0	0	96	29	23.2
MTRF1	0	genome.wustl.edu	37	13	41834827	41834827	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	41834827	41834827	T	C	SNP	MTRF1	ENST00000430347	human	ensembl	74_37	-1	known	missense	c.256	p.K86E	1.000	NULL	pfam_Pep_chain_release_fac_I_II,pfam_PCRF,smart_PCRF	-	no_errors	MTRF1	HGNC	ENSG00000120662				198	0	0	167	14	7.73481
VWA8	0	genome.wustl.edu	37	13	42465597	42465597	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	42465597	42465597	G	A	SNP	VWA8	ENST00000379310	human	ensembl	74_37	-1	known	missense	c.610	p.R204C	1.000	pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase	pfam_ATPase_dyneun-rel_AAA,pfam_VWF_A,superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA8	HGNC	ENSG00000102763				175	0	0	98	43	30.4965
DGKH	0	genome.wustl.edu	37	13	42793448	42793448	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	42793448	42793448	C	T	SNP	DGKH	ENST00000337343	human	ensembl	74_37	+1	known	missense	c.3296	p.P1099L	0.988	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_SAM_2,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_SAM_type1,superfamily_SAM/pointed,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_SAM,pfscan_Pleckstrin_homology,pfscan_SAM,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKH	HGNC	ENSG00000102780				217	0	0	159	14	8.09249
AKAP11	0	genome.wustl.edu	37	13	42875031	42875031	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	42875031	42875031	G	A	SNP	AKAP11	ENST00000025301	human	ensembl	74_37	+1	known	missense	c.2149	p.A717T	1.000	NULL	NULL	-	no_errors	AKAP11	HGNC	ENSG00000023516				138	0	0	81	45	35.7143
AKAP11	0	genome.wustl.edu	37	13	42876608	42876608	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	42876608	42876608	G	A	SNP	AKAP11	ENST00000025301	human	ensembl	74_37	+1	known	silent	c.3726	p.S1242	0.020	NULL	NULL	-	no_errors	AKAP11	HGNC	ENSG00000023516				108	0	0	78	26	25
SLC25A30	0	genome.wustl.edu	37	13	45983111	45983111	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	45983111	45983111	C	T	SNP	SLC25A30	ENST00000519676	human	ensembl	74_37	-1	known	missense	c.163	p.A55T	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_uncoupling	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_uncoupling,prints_Mit_carrier	-	no_errors	SLC25A30	HGNC	ENSG00000174032				142	0	0	85	25	22.7273
ARL11	0	genome.wustl.edu	37	13	50204926	50204926	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	50204926	50204926	G	A	SNP	ARL11	ENST00000282026	human	ensembl	74_37	+1	known	missense	c.343	p.V115I	0.072	pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_Small_GTPase,pfam_MIRO-like,superfamily_P-loop_NTPase,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,prints_Small_GTPase_ARF/SAR,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_Small_GTPase,pfam_Gtr1_RagA,pfam_MIRO-like,superfamily_P-loop_NTPase,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,prints_Small_GTPase_ARF/SAR,tigrfam_Small_GTP-bd_dom	-	no_errors	ARL11	HGNC	ENSG00000152213				60	0	0	42	31	42.4658
SPRYD7	0	genome.wustl.edu	37	13	50505205	50505205	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	50505205	50505205	C	T	SNP	SPRYD7	ENST00000361840	human	ensembl	74_37	-1	known	missense	c.172	p.A58T	1.000	superfamily_ConA-like_lec_gl_sf,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	-	no_errors	SPRYD7	HGNC	ENSG00000123178				64	0	0	44	12	21.4286
FAM124A	0	genome.wustl.edu	37	13	51855296	51855296	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	51855296	51855296	C	T	SNP	FAM124A	ENST00000280057	human	ensembl	74_37	+1	known	silent	c.1653	p.C551	0.000	NULL	NULL	-	no_errors	FAM124A	HGNC	ENSG00000150510				64	0	0	45	5	10
INTS6	0	genome.wustl.edu	37	13	51953678	51953678	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	51953678	51953678	C	T	SNP	INTS6	ENST00000311234	human	ensembl	74_37	-1	known	missense	c.1306	p.A436T	1.000	NULL	pfam_VWF_A,pfscan_VWF_A	-	no_errors	INTS6	HGNC	ENSG00000102786				113	0	0	68	19	21.8391
CCDC70	0	genome.wustl.edu	37	13	52439935	52439935	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	52439935	52439935	G	A	SNP	CCDC70	ENST00000242819	human	ensembl	74_37	+1	known	missense	c.421	p.A141T	0.005	NULL	NULL	-	no_errors	CCDC70	HGNC	ENSG00000123171				233	0	0	189	10	5.02513
ALG11	0	genome.wustl.edu	37	13	52598400	52598400	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	52598400	52598400	C	T	SNP	ALG11	ENST00000521508	human	ensembl	74_37	+1	known	silent	c.534	p.Y178	0.070	NULL	pfam_Glyco_trans_1	-	no_errors	ALG11	HGNC	ENSG00000253710				128	1	0.775194	90	31	25.6198
UTP14C	0	genome.wustl.edu	37	13	52603935	52603935	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	52603935	52603935	T	C	SNP	UTP14C	ENST00000521776	human	ensembl	74_37	+1	known	missense	c.995	p.L332P	1.000	pfam_SSU_processome_Utp14	pfam_SSU_processome_Utp14	-	no_errors	UTP14C	HGNC	ENSG00000253797				144	0	0	99	24	19.5122
THSD1	0	genome.wustl.edu	37	13	52960256	52960256	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	52960256	52960256	G	A	SNP	THSD1	ENST00000258613	human	ensembl	74_37	-1	known	missense	c.1087	p.R363C	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD1	HGNC	ENSG00000136114				138	0	0	82	30	26.7857
LECT1	0	genome.wustl.edu	37	13	53282677	53282677	+	Silent	SNP	A	A	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	53282677	53282677	A	C	SNP	LECT1	ENST00000377962	human	ensembl	74_37	-1	known	silent	c.783	p.P261	0.989	NULL	pfam_BRICHOS_dom,pfscan_BRICHOS_dom	-	no_errors	LECT1	HGNC	ENSG00000136110				65	0	0	27	16	37.2093
PCDH8	0	genome.wustl.edu	37	13	53418988	53418988	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	53418988	53418988	C	T	SNP	PCDH8	ENST00000377942	human	ensembl	74_37	-1	known	missense	c.2920	p.A974T	0.049	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH8	HGNC	ENSG00000136099				37	0	0	25	21	45.6522
OLFM4	0	genome.wustl.edu	37	13	53624246	53624246	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	53624246	53624246	G	A	SNP	OLFM4	ENST00000219022	human	ensembl	74_37	+1	known	silent	c.873	p.A291	0.202	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	pfam_Olfac-like,superfamily_Quinoprot_gluc/sorb_DH,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFM4	HGNC	ENSG00000102837				100	0	0	68	5	6.84932
PCDH17	0	genome.wustl.edu	37	13	58208511	58208511	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	58208511	58208511	C	T	SNP	PCDH17	ENST00000377918	human	ensembl	74_37	+1	known	missense	c.1831	p.R611C	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH17	HGNC	ENSG00000118946				44	0	0	19	6	24
PCDH20	0	genome.wustl.edu	37	13	61986229	61986229	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	61986229	61986229	G	T	SNP	PCDH20	ENST00000409186	human	ensembl	74_37	-1	known	missense	c.2003	p.A668D	0.998	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH20	HGNC	ENSG00000197991				121	0	0	69	18	20.6897
DACH1	0	genome.wustl.edu	37	13	72049901	72049901	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	72049901	72049901	G	A	SNP	DACH1	ENST00000359684	human	ensembl	74_37	-1	known	missense	c.2113	p.R705C	1.000	NULL	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	-	no_errors	DACH1	HGNC	ENSG00000165659				204	0	0	179	11	5.78947
BORA	0	genome.wustl.edu	37	13	73321194	73321194	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	73321194	73321194	G	A	SNP	BORA	ENST00000390667	human	ensembl	74_37	+1	known	missense	c.1427	p.C476Y	1.000	NULL	prints_Aurora_borealis_protien	-	no_errors	BORA	HGNC	ENSG00000136122				230	0	0	163	39	19.3069
LMO7	0	genome.wustl.edu	37	13	76379754	76379754	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	76379754	76379754	C	T	SNP	LMO7	ENST00000357063	human	ensembl	74_37	+1	known	missense	c.1210	p.R404C	1.000	NULL	pfam_CH-domain,pfam_PDZ,superfamily_CH-domain,superfamily_PDZ,smart_CH-domain,smart_PDZ,pfscan_CH-domain,pfscan_PDZ,prints_SM22_calponin	-	no_errors	LMO7	HGNC	ENSG00000136153				426	0	0	283	75	20.9497
LMO7	0	genome.wustl.edu	37	13	76391408	76391408	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	76391408	76391408	G	A	SNP	LMO7	ENST00000357063	human	ensembl	74_37	+1	known	nonsense	c.2214	p.W738*	1.000	NULL	pfam_CH-domain,pfam_PDZ,superfamily_CH-domain,superfamily_PDZ,smart_CH-domain,smart_PDZ,pfscan_CH-domain,pfscan_PDZ,prints_SM22_calponin	-	no_errors	LMO7	HGNC	ENSG00000136153				135	0	0	84	30	26.3158
LMO7	0	genome.wustl.edu	37	13	76408509	76408509	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	76408509	76408509	G	A	SNP	LMO7	ENST00000357063	human	ensembl	74_37	+1	known	missense	c.3368	p.R1123H	1.000	superfamily_PDZ,smart_PDZ	pfam_CH-domain,pfam_PDZ,superfamily_CH-domain,superfamily_PDZ,smart_CH-domain,smart_PDZ,pfscan_CH-domain,pfscan_PDZ,prints_SM22_calponin	-	no_errors	LMO7	HGNC	ENSG00000136153				91	0	0	91	8	8.08081
LMO7	0	genome.wustl.edu	37	13	76427231	76427231	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	76427231	76427231	C	T	SNP	LMO7	ENST00000357063	human	ensembl	74_37	+1	known	silent	c.4524	p.G1508	0.635	NULL	pfam_CH-domain,pfam_PDZ,superfamily_CH-domain,superfamily_PDZ,smart_CH-domain,smart_PDZ,pfscan_CH-domain,pfscan_PDZ,prints_SM22_calponin	-	no_errors	LMO7	HGNC	ENSG00000136153				70	0	0	31	12	27.907
FBXL3	0	genome.wustl.edu	37	13	77592810	77592810	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	77592810	77592810	C	T	SNP	FBXL3	ENST00000355619	human	ensembl	74_37	-1	known	silent	c.396	p.S132	0.166	NULL	pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom	-	no_errors	FBXL3	HGNC	ENSG00000005812				91	0	0	66	8	10.8108
MYCBP2	0	genome.wustl.edu	37	13	77807298	77807298	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	77807298	77807298	C	T	SNP	MYCBP2	ENST00000407578	human	ensembl	74_37	-1	known	silent	c.2730	p.K910	1.000	superfamily_RCC1/BLIP-II,superfamily_ARM-type_fold	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_RCC1/BLIP-II,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810				232	0	0	181	14	7.17949
SCEL	0	genome.wustl.edu	37	13	78188060	78188060	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	78188060	78188060	T	C	SNP	SCEL	ENST00000349847	human	ensembl	74_37	+1	known	missense	c.1421	p.V474A	0.496	NULL	smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	SCEL	HGNC	ENSG00000136155				141	0	0	110	6	5.17241
SLAIN1	0	genome.wustl.edu	37	13	78318625	78318625	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	78318625	78318625	G	A	SNP	SLAIN1	ENST00000465831	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SLAIN1	HGNC	ENSG00000139737				27	0	0	15	7	31.8182
EDNRB	0	genome.wustl.edu	37	13	78492681	78492681	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	78492681	78492681	G	A	SNP	EDNRB	ENST00000334286	human	ensembl	74_37	-1	known	missense	c.28	p.R10C	0.005	prints_ETB_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_ETB_rcpt,prints_Endthln_rcpt,prints_GPCR_Rhodpsn,prints_Bombsn_rcpt	-	no_errors	EDNRB	HGNC	ENSG00000136160				17	0	0	15	7	31.8182
EDNRB	0	genome.wustl.edu	37	13	78492730	78492730	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	78492730	78492730	C	T	SNP	EDNRB	ENST00000377211	human	ensembl	74_37	-1	putative	silent	c.249	p.T83	0.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_ETB_rcpt,prints_Endthln_rcpt,prints_GPCR_Rhodpsn,prints_Bombsn_rcpt	-	no_errors	EDNRB	HGNC	ENSG00000136160				14	0	0	3	4	57.1429
POU4F1	0	genome.wustl.edu	37	13	79175910	79175910	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	79175910	79175910	G	A	SNP	POU4F1	ENST00000377208	human	ensembl	74_37	-1	known	silent	c.900	p.G300	0.999	pfam_POU_specific,superfamily_Lambda_DNA-bd_dom,smart_POU_specific,pfscan_POU_specific	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU	-	no_errors	POU4F1	HGNC	ENSG00000152192				18	0	0	9	6	40
RBM26	0	genome.wustl.edu	37	13	79943029	79943029	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	79943029	79943029	C	T	SNP	RBM26	ENST00000438724	human	ensembl	74_37	-1	known	missense	c.731	p.G244D	1.000	NULL	pfam_PWI_dom,superfamily_PWI_dom,smart_Znf_CCCH,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM26	HGNC	ENSG00000139746				150	0	0	122	7	5.42636
SLITRK6	0	genome.wustl.edu	37	13	86369760	86369760	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	86369760	86369760	C	T	SNP	SLITRK6	ENST00000400286	human	ensembl	74_37	-1	known	missense	c.884	p.R295H	0.013	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK6	HGNC	ENSG00000184564				116	0	0	90	22	19.6429
SLITRK5	0	genome.wustl.edu	37	13	88329951	88329951	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	88329951	88329951	G	T	SNP	SLITRK5	ENST00000325089	human	ensembl	74_37	+1	known	missense	c.2308	p.G770C	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK5	HGNC	ENSG00000165300				100	0	0	50	5	9.09091
MIR17HG	0	genome.wustl.edu	37	13	92003419	92003419	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	92003419	92003419	G	A	SNP	MIR17HG	ENST00000581816	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.018	-	-	-	no_errors	MIR17HG	HGNC	ENSG00000215417				202	0	0	174	25	12.5628
GPC5	0	genome.wustl.edu	37	13	92345910	92345910	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	92345910	92345910	G	A	SNP	GPC5	ENST00000377067	human	ensembl	74_37	+1	known	silent	c.795	p.A265	0.000	pfam_Glypican	pfam_Glypican	-	no_errors	GPC5	HGNC	ENSG00000179399				44	0	0	49	11	18.3333
GPC6	0	genome.wustl.edu	37	13	94958286	94958286	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	94958286	94958286	G	A	SNP	GPC6	ENST00000377047	human	ensembl	74_37	+1	known	missense	c.1061	p.R354H	1.000	pfam_Glypican	pfam_Glypican	-	no_errors	GPC6	HGNC	ENSG00000183098				169	0	0	144	11	7.09677
DZIP1	0	genome.wustl.edu	37	13	96239899	96239899	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	96239899	96239899	C	T	SNP	DZIP1	ENST00000347108	human	ensembl	74_37	-1	known	silent	c.2112	p.P704	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	DZIP1	HGNC	ENSG00000134874				60	0	0	41	5	10.8696
HS6ST3	0	genome.wustl.edu	37	13	97485082	97485082	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	97485082	97485082	C	T	SNP	HS6ST3	ENST00000376705	human	ensembl	74_37	+1	known	missense	c.1046	p.A349V	1.000	pfam_Sulfotransferase	pfam_Sulfotransferase,superfamily_P-loop_NTPase	-	no_errors	HS6ST3	HGNC	ENSG00000185352				104	0	0	90	5	5.26316
OXGR1	0	genome.wustl.edu	37	13	97639229	97639229	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	97639229	97639229	A	C	SNP	OXGR1	ENST00000298440	human	ensembl	74_37	-1	known	missense	c.785	p.V262G	0.980	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	OXGR1	HGNC	ENSG00000165621				89	0	0	78	5	6.0241
MBNL2	0	genome.wustl.edu	37	13	98009823	98009823	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	98009823	98009823	G	A	SNP	MBNL2	ENST00000376673	human	ensembl	74_37	+1	known	missense	c.892	p.V298I	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	MBNL2	HGNC	ENSG00000139793				146	0	0	103	46	30.8725
RNF113B	0	genome.wustl.edu	37	13	98829385	98829385	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	98829385	98829385	G	A	SNP	RNF113B	ENST00000267291	human	ensembl	74_37	-1	known	missense	c.106	p.R36C	0.975	NULL	pfam_Znf_CCCH,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF113B	HGNC	ENSG00000139797				21	0	0	9	7	43.75
FARP1	0	genome.wustl.edu	37	13	99042215	99042215	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	99042215	99042215	C	T	SNP	FARP1	ENST00000376586	human	ensembl	74_37	+1	known	missense	c.860	p.A287V	0.955	pfam_FERM_PH-like_C,pfscan_FERM_domain	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM-adjacent,pfam_FERM_central,superfamily_DH-domain,superfamily_FERM_central,smart_Band_41_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_FERM_domain,pfscan_Pleckstrin_homology,pfscan_DH-domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	FARP1	HGNC	ENSG00000152767				107	1	0.925926	82	7	7.86517
MIR379	0	genome.wustl.edu	37	14	101488429	101488429	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	101488429	101488429	C	T	SNP	MIR379	ENST00000362218	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR379	HGNC	ENSG00000199088				57	0	0	48	17	26.1538
MIR134	0	genome.wustl.edu	37	14	101521030	101521030	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	101521030	101521030	G	A	SNP	MIR134	ENST00000385258	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR134	HGNC	ENSG00000207993				28	0	0	23	12	34.2857
PPP2R5C	0	genome.wustl.edu	37	14	102349641	102349641	+	Silent	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	102349641	102349641	A	G	SNP	PPP2R5C	ENST00000422945	human	ensembl	74_37	+1	known	silent	c.546	p.Q182	1.000	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	-	no_errors	PPP2R5C	HGNC	ENSG00000078304				60	0	0	49	20	28.9855
PPP2R5C	0	genome.wustl.edu	37	14	102356590	102356590	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	102356590	102356590	G	A	SNP	PPP2R5C	ENST00000422945	human	ensembl	74_37	+1	known	missense	c.739	p.E247K	1.000	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	-	no_errors	PPP2R5C	HGNC	ENSG00000078304				79	0	0	38	24	38.7097
DYNC1H1	0	genome.wustl.edu	37	14	102453010	102453010	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	102453010	102453010	C	T	SNP	DYNC1H1	ENST00000360184	human	ensembl	74_37	+1	known	silent	c.2448	p.I816	0.978	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like,smart_AAA+_ATPase	-	no_errors	DYNC1H1	HGNC	ENSG00000197102				100	1	0.990099	64	13	16.8831
DYNC1H1	0	genome.wustl.edu	37	14	102469005	102469005	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	102469005	102469005	G	T	SNP	DYNC1H1	ENST00000360184	human	ensembl	74_37	+1	known	missense	c.4674	p.K1558N	1.000	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like,smart_AAA+_ATPase	-	no_errors	DYNC1H1	HGNC	ENSG00000197102				124	0	0	103	15	12.7119
CDC42BPB	0	genome.wustl.edu	37	14	103442313	103442313	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	103442313	103442313	G	A	SNP	CDC42BPB	ENST00000361246	human	ensembl	74_37	-1	known	missense	c.1294	p.R432W	1.000	NULL	pfam_Citron,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,smart_CRIB_dom,pfscan_CRIB_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	CDC42BPB	HGNC	ENSG00000198752				75	0	0	70	5	6.66667
CDC42BPB	0	genome.wustl.edu	37	14	103447231	103447231	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	103447231	103447231	G	A	SNP	CDC42BPB	ENST00000361246	human	ensembl	74_37	-1	known	missense	c.1019	p.A340V	0.604	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Citron,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,smart_CRIB_dom,pfscan_CRIB_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	CDC42BPB	HGNC	ENSG00000198752				109	0	0	72	22	23.4043
EXOC3L4	0	genome.wustl.edu	37	14	103574016	103574016	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	103574016	103574016	C	T	SNP	EXOC3L4	ENST00000380069	human	ensembl	74_37	+1	known	missense	c.1750	p.R584W	0.032	pfam_Sec6	pfam_Sec6	-	no_errors	EXOC3L4	HGNC	ENSG00000205436				10	0	0	2	3	60
MARK3	0	genome.wustl.edu	37	14	103941507	103941507	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	103941507	103941507	C	T	SNP	MARK3	ENST00000429436	human	ensembl	74_37	+1	known	missense	c.1442	p.A481V	0.999	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_KA1_dom,superfamily_Kinase-like_dom,superfamily_KA1/Ssp2_C,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MARK3	HGNC	ENSG00000075413				88	0	0	59	14	19.1781
ZFYVE21	0	genome.wustl.edu	37	14	104194182	104194182	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	104194182	104194182	G	A	SNP	ZFYVE21	ENST00000216602	human	ensembl	74_37	+1	known	missense	c.289	p.A97T	0.998	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE21	HGNC	ENSG00000100711				26	0	0	25	8	24.2424
ADSSL1	0	genome.wustl.edu	37	14	105208225	105208225	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	105208225	105208225	C	T	SNP	ADSSL1	ENST00000332972	human	ensembl	74_37	+1	known	silent	c.963	p.G321	0.131	pfam_Adenylosuccinate_synthetase,superfamily_P-loop_NTPase,smart_Adenylosuccinate_synthetase,tigrfam_Adenylosuccinate_synthetase	pfam_Adenylosuccinate_synthetase,superfamily_P-loop_NTPase,smart_Adenylosuccinate_synthetase,tigrfam_Adenylosuccinate_synthetase	-	no_errors	ADSSL1	HGNC	ENSG00000185100				107	0	0	65	29	30.8511
AHNAK2	0	genome.wustl.edu	37	14	105406357	105406357	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	105406357	105406357	C	T	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	missense	c.15431	p.S5144N	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				75	0	0	69	21	23.3333
AHNAK2	0	genome.wustl.edu	37	14	105411840	105411840	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	105411840	105411840	C	T	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	silent	c.9948	p.P3316	0.008	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				338	0	0	235	74	23.9482
AHNAK2	0	genome.wustl.edu	37	14	105413326	105413326	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	105413326	105413326	G	A	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	missense	c.8462	p.P2821L	0.988	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				394	0	0	246	82	25
AHNAK2	0	genome.wustl.edu	37	14	105415885	105415885	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	105415885	105415885	G	A	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	missense	c.5903	p.A1968V	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				257	0	0	162	51	23.9437
CDCA4	0	genome.wustl.edu	37	14	105478028	105478028	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	105478028	105478028	C	T	SNP	CDCA4	ENST00000336219	human	ensembl	74_37	-1	known	missense	c.239	p.R80H	0.588	NULL	pfam_SERTA,pfscan_SERTA	-	no_errors	CDCA4	HGNC	ENSG00000170779				36	0	0	31	4	11.4286
GPR132	0	genome.wustl.edu	37	14	105517738	105517738	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	105517738	105517738	C	T	SNP	GPR132	ENST00000329797	human	ensembl	74_37	-1	known	missense	c.736	p.A246T	0.013	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_G2A_lysphc_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	GPR132	HGNC	ENSG00000183484				69	0	0	33	24	42.1053
JAG2	0	genome.wustl.edu	37	14	105618517	105618517	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	105618517	105618517	G	A	SNP	JAG2	ENST00000331782	human	ensembl	74_37	-1	known	silent	c.900	p.G300	0.969	smart_EG-like_dom	pfam_EG-like_dom,pfam_Notch_ligand_N,pfam_DSL,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,smart_DSL,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_VWC_out,smart_VWF_C,pfscan_DSL,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	JAG2	HGNC	ENSG00000184916				56	0	0	49	9	15.5172
BRF1	0	genome.wustl.edu	37	14	105707625	105707625	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	105707625	105707625	C	T	SNP	BRF1	ENST00000546474	human	ensembl	74_37	-1	known	missense	c.671	p.R224H	1.000	pfam_TFIIB_cyclin,superfamily_Cyclin-like,smart_Cyclin-like,prints_TFIIB	pfam_TFIIB_cyclin,pfam_BRF1_TBP-bd,pfam_Znf_TFIIB,superfamily_Cyclin-like,smart_Cyclin-like,pfscan_Znf_TFIIB,prints_TFIIB	-	no_errors	BRF1	HGNC	ENSG00000185024				20	0	0	7	8	53.3333
BTBD6	0	genome.wustl.edu	37	14	105716187	105716187	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	105716187	105716187	C	T	SNP	BTBD6	ENST00000392554	human	ensembl	74_37	+1	known	silent	c.636	p.D212	0.686	pfam_BACK,smart_BACK	pfam_PHR,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD6	HGNC	ENSG00000184887				19	0	0	20	8	28.5714
ENSG00000244306	0	genome.wustl.edu	37	14	19855474	19855474	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	19855474	19855474	C	T	SNP	ENSG00000244306	ENST00000551334	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.987	-	-	-	no_errors	CTD-2314B22.3	Clone_based_vega_gene	ENSG00000244306				32	0	0	23	4	14.8148
OR4K1	0	genome.wustl.edu	37	14	20404274	20404274	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	20404274	20404274	C	T	SNP	OR4K1	ENST00000285600	human	ensembl	74_37	+1	known	missense	c.449	p.A150V	0.226	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4K1	HGNC	ENSG00000155249				174	0	0	150	12	7.40741
OR4K1	0	genome.wustl.edu	37	14	20404350	20404350	+	Silent	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	20404350	20404350	T	C	SNP	OR4K1	ENST00000285600	human	ensembl	74_37	+1	known	silent	c.525	p.D175	0.171	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4K1	HGNC	ENSG00000155249				200	0	0	170	33	16.2562
TTC5	0	genome.wustl.edu	37	14	20763639	20763639	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	20763639	20763639	C	T	SNP	TTC5	ENST00000258821	human	ensembl	74_37	-1	known	missense	c.890	p.R297H	1.000	NULL	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC5	HGNC	ENSG00000136319				48	0	0	22	12	35.2941
CCNB1IP1	0	genome.wustl.edu	37	14	20784573	20784573	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	20784573	20784573	C	T	SNP	CCNB1IP1	ENST00000353689	human	ensembl	74_37	-1	known	missense	c.110	p.G37D	1.000	NULL	NULL	-	no_errors	CCNB1IP1	HGNC	ENSG00000100814				76	0	0	50	7	12.2807
TEP1	0	genome.wustl.edu	37	14	20836631	20836631	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	20836631	20836631	C	T	SNP	TEP1	ENST00000262715	human	ensembl	74_37	-1	known	missense	c.7849	p.V2617M	0.010	NULL	pfam_TROVE,pfam_TEP1_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pfscan_NACHT_NTPase,pfscan_TROVE,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TEP1	HGNC	ENSG00000129566				79	0	0	47	21	30.8824
TEP1	0	genome.wustl.edu	37	14	20853143	20853143	+	Splice_Site	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	20853143	20853143	C	T	SNP	TEP1	ENST00000262715	human	ensembl	74_37	-1	known	splice_site	c.3107+1	e20+1	1.000	-	-	-	no_errors	TEP1	HGNC	ENSG00000129566				33	0	0	26	7	21.2121
RNASE4	0	genome.wustl.edu	37	14	21167643	21167643	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	21167643	21167643	G	A	SNP	RNASE4	ENST00000304704	human	ensembl	74_37	+1	known	missense	c.113	p.R38Q	0.995	pfam_RNaseA_domain,superfamily_RNaseA_domain,smart_RNaseA_domain	pfam_RNaseA_domain,superfamily_RNaseA_domain,smart_RNaseA_domain,prints_RNaseA	-	no_errors	RNASE4	HGNC	ENSG00000258818				78	0	0	70	5	6.66667
ARHGEF40	0	genome.wustl.edu	37	14	21542396	21542396	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	21542396	21542396	G	A	SNP	ARHGEF40	ENST00000298694	human	ensembl	74_37	+1	known	silent	c.507	p.A169	0.011	NULL	pfam_DH-domain,superfamily_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF40	HGNC	ENSG00000165801				50	0	0	26	5	16.129
HNRNPC	0	genome.wustl.edu	37	14	21702318	21702318	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	21702318	21702318	C	T	SNP	HNRNPC	ENST00000320084	human	ensembl	74_37	-1	known	missense	c.35	p.R12H	1.000	pirsf_hnRNP_C_Raly	pfam_RRM_dom,superfamily_Regulat_G_prot_signal_superfam,smart_RRM_dom,pirsf_hnRNP_C_Raly,pfscan_RRM_dom	-	no_errors	HNRNPC	HGNC	ENSG00000092199				118	1	0.840336	59	28	32.1839
CHD8	0	genome.wustl.edu	37	14	21873401	21873401	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	21873401	21873401	G	A	SNP	CHD8	ENST00000399982	human	ensembl	74_37	-1	known	missense	c.3274	p.R1092C	1.000	pfam_SNF2_N,superfamily_P-loop_NTPase	pfam_SNF2_N,pfam_Chromo_domain,pfam_BRK_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD8	HGNC	ENSG00000100888				36	0	0	21	10	32.2581
OR10G3	0	genome.wustl.edu	37	14	22038134	22038134	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	22038134	22038134	C	T	SNP	OR10G3	ENST00000303532	human	ensembl	74_37	-1	known	missense	c.742	p.V248M	0.773	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10G3	HGNC	ENSG00000169208				102	0	0	71	28	28.2828
IL25	0	genome.wustl.edu	37	14	23845030	23845030	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	23845030	23845030	C	T	SNP	IL25	ENST00000329715	human	ensembl	74_37	+1	known	missense	c.475	p.R159C	1.000	pfam_IL-17_fam	pfam_IL-17_fam	-	no_errors	IL25	HGNC	ENSG00000166090				57	0	0	41	11	21.1538
MYH6	0	genome.wustl.edu	37	14	23862233	23862233	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	23862233	23862233	G	A	SNP	MYH6	ENST00000356287	human	ensembl	74_37	-1	known	missense	c.3139	p.R1047C	1.000	NULL	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH6	HGNC	ENSG00000197616				70	0	0	67	8	10.6667
MYH7	0	genome.wustl.edu	37	14	23886441	23886441	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	23886441	23886441	C	A	SNP	MYH7	ENST00000355349	human	ensembl	74_37	-1	known	missense	c.4440	p.E1480D	1.000	pfam_Myosin_tail,superfamily_Prefoldin	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7	HGNC	ENSG00000092054				140	0	0	110	7	5.98291
PCK2	0	genome.wustl.edu	37	14	24572751	24572751	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	24572751	24572751	C	T	SNP	PCK2	ENST00000216780	human	ensembl	74_37	+1	known	missense	c.1501	p.R501W	1.000	pfam_PEP_carboxykinase_GTP,pirsf_PEP_carboxykinase_GTP	pfam_PEP_carboxykinase_GTP,superfamily_PEP_carboxykinase_N,pirsf_PEP_carboxykinase_GTP	-	no_errors	PCK2	HGNC	ENSG00000100889				113	0	0	48	22	31.4286
RNF31	0	genome.wustl.edu	37	14	24618731	24618731	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	24618731	24618731	C	T	SNP	RNF31	ENST00000324103	human	ensembl	74_37	+1	known	missense	c.748	p.R250C	1.000	NULL	pfam_PUB_domain,pfam_Znf_C6HC,superfamily_UBA-like,superfamily_DEATH-like_dom,superfamily_Znf_FYVE_PHD,smart_Znf_RanBP2,smart_Znf_C6HC,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_RanBP2	-	no_errors	RNF31	HGNC	ENSG00000092098				83	0	0	56	21	27.2727
RNF31	0	genome.wustl.edu	37	14	24620776	24620776	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	24620776	24620776	G	A	SNP	RNF31	ENST00000324103	human	ensembl	74_37	+1	known	missense	c.1820	p.R607Q	0.997	superfamily_UBA-like,superfamily_DEATH-like_dom,pfscan_UBA/transl_elong_EF1B_N_euk	pfam_PUB_domain,pfam_Znf_C6HC,superfamily_UBA-like,superfamily_DEATH-like_dom,superfamily_Znf_FYVE_PHD,smart_Znf_RanBP2,smart_Znf_C6HC,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_RanBP2	-	no_errors	RNF31	HGNC	ENSG00000092098				44	0	0	28	10	26.3158
REC8	0	genome.wustl.edu	37	14	24642219	24642219	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	24642219	24642219	C	T	SNP	REC8	ENST00000311457	human	ensembl	74_37	+1	known	silent	c.237	p.R79	0.858	pfam_Rad21_Rec8_N	pfam_Rad21_Rec8_N,pfam_Rad21/Rec8_C_eu	-	no_errors	REC8	HGNC	ENSG00000100918				102	0	0	67	22	24.7191
IPO4	0	genome.wustl.edu	37	14	24654160	24654160	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	24654160	24654160	C	T	SNP	IPO4	ENST00000354464	human	ensembl	74_37	-1	known	missense	c.1435	p.E479K	0.991	superfamily_ARM-type_fold	pfam_HEAT,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_HEAT_type_2,pfscan_Importin-beta_N	-	no_errors	IPO4	HGNC	ENSG00000196497				30	0	0	22	3	12
ADCY4	0	genome.wustl.edu	37	14	24791279	24791279	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	24791279	24791279	C	T	SNP	ADCY4	ENST00000310677	human	ensembl	74_37	-1	known	missense	c.2579	p.R860H	1.000	smart_A/G_cyclase	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY4	HGNC	ENSG00000129467				104	0	0	43	23	34.8485
ADCY4	0	genome.wustl.edu	37	14	24792217	24792217	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	24792217	24792217	C	T	SNP	ADCY4	ENST00000310677	human	ensembl	74_37	-1	known	silent	c.2235	p.L745	1.000	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY4	HGNC	ENSG00000129467				21	0	0	25	4	13.7931
KHNYN	0	genome.wustl.edu	37	14	24900835	24900835	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	24900835	24900835	G	A	SNP	KHNYN	ENST00000251343	human	ensembl	74_37	+1	known	missense	c.368	p.G123D	1.000	NULL	pfam_RNase_Zc3h12	-	no_errors	KHNYN	HGNC	ENSG00000100441				48	0	0	33	9	21.4286
LOC100506071	0	genome.wustl.edu	37	14	31354324	31354324	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	31354324	31354324	C	T	SNP	LOC100506071	ENST00000555421	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-829H16.3	Clone_based_vega_gene	ENSG00000258525				104	0	0	74	35	32.1101
HECTD1	0	genome.wustl.edu	37	14	31604296	31604296	+	Silent	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	31604296	31604296	A	G	SNP	HECTD1	ENST00000399332	human	ensembl	74_37	-1	known	silent	c.3360	p.R1120	1.000	pfam_Sad1_UNC_C,superfamily_Galactose-bd-like	pfam_HECT,pfam_Sad1_UNC_C,pfam_Mib_Herc2,pfam_Ankyrin_rpt,superfamily_HECT,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,superfamily_Galactose-bd-like,smart_Ankyrin_rpt,smart_HECT,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_HECT	-	no_errors	HECTD1	HGNC	ENSG00000092148				124	0	0	113	41	26.6234
BAZ1A	0	genome.wustl.edu	37	14	35240741	35240741	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	35240741	35240741	G	A	SNP	BAZ1A	ENST00000360310	human	ensembl	74_37	-1	known	missense	c.3277	p.R1093W	1.000	NULL	pfam_WSTF_Acf1_Cbp146,pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_WSTF_Acf1_Cbp146,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ1A	HGNC	ENSG00000198604				235	0	0	222	20	8.26446
KIAA0391	0	genome.wustl.edu	37	14	35739649	35739649	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	35739649	35739649	C	T	SNP	KIAA0391	ENST00000534898	human	ensembl	74_37	+1	known	silent	c.1467	p.S489	0.078	NULL	NULL	-	no_errors	KIAA0391	HGNC	ENSG00000100890				118	0	0	69	30	30.303
SSTR1	0	genome.wustl.edu	37	14	38678974	38678974	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	38678974	38678974	C	T	SNP	SSTR1	ENST00000267377	human	ensembl	74_37	+1	known	missense	c.380	p.A127V	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Somatstn_rcpt_1,prints_GPCR_Rhodpsn,prints_Somatstn_rcpt,prints_Opioid_rcpt,prints_NPY_rcpt,prints_Neuropept_B/W_rcpt	-	no_errors	SSTR1	HGNC	ENSG00000139874				137	0	0	103	30	22.5564
SSTR1	0	genome.wustl.edu	37	14	38679346	38679346	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	38679346	38679346	G	A	SNP	SSTR1	ENST00000267377	human	ensembl	74_37	+1	known	missense	c.752	p.R251H	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Somatstn_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Somatstn_rcpt_1,prints_GPCR_Rhodpsn,prints_Somatstn_rcpt,prints_Opioid_rcpt,prints_NPY_rcpt,prints_Neuropept_B/W_rcpt	-	no_errors	SSTR1	HGNC	ENSG00000139874				59	0	0	44	4	8.33333
CLEC14A	0	genome.wustl.edu	37	14	38724733	38724733	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	38724733	38724733	G	A	SNP	CLEC14A	ENST00000342213	human	ensembl	74_37	-1	known	silent	c.495	p.R165	0.960	superfamily_C-type_lectin_fold,smart_C-type_lectin	superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CLEC14A	HGNC	ENSG00000176435				24	0	0	23	9	28.125
CLEC14A	0	genome.wustl.edu	37	14	38724747	38724747	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	38724747	38724747	G	A	SNP	CLEC14A	ENST00000342213	human	ensembl	74_37	-1	known	nonsense	c.481	p.R161*	0.920	superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CLEC14A	HGNC	ENSG00000176435				19	0	0	23	3	11.5385
KLHL28	0	genome.wustl.edu	37	14	45400591	45400591	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	45400591	45400591	G	A	SNP	KLHL28	ENST00000396128	human	ensembl	74_37	-1	known	silent	c.1497	p.Y499	0.993	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL28	HGNC	ENSG00000179454				67	0	0	46	18	28.125
FAM179B	0	genome.wustl.edu	37	14	45473399	45473399	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	45473399	45473399	C	G	SNP	FAM179B	ENST00000361577	human	ensembl	74_37	+1	known	missense	c.2474	p.T825S	0.997	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FAM179B	HGNC	ENSG00000198718				139	0	0	81	24	22.8571
PRPF39	0	genome.wustl.edu	37	14	45579902	45579902	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	45579902	45579902	C	T	SNP	PRPF39	ENST00000355765	human	ensembl	74_37	+1	known	missense	c.1454	p.A485V	1.000	NULL	smart_HAT	-	no_errors	PRPF39	HGNC	ENSG00000185246				29	0	0	17	4	19.0476
FANCM	0	genome.wustl.edu	37	14	45667954	45667954	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	45667954	45667954	G	A	SNP	FANCM	ENST00000267430	human	ensembl	74_37	+1	known	missense	c.5824	p.A1942T	1.000	superfamily_Restrct_endonuc-II-like	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Restrct_endonuc-II-like,superfamily_RuvA_2-like,smart_Helicase_ATP-bd,smart_Helicase_C,smart_ERCC4_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	FANCM	HGNC	ENSG00000187790				105	0	0	69	19	21.5909
NIN	0	genome.wustl.edu	37	14	51210171	51210171	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	51210171	51210171	G	A	SNP	NIN	ENST00000245441	human	ensembl	74_37	-1	known	missense	c.5264	p.A1755V	0.753	NULL	superfamily_tRNA-bd_arm,pfscan_EF_hand_dom	-	no_errors	NIN	HGNC	ENSG00000100503				50	0	0	31	29	48.3333
TRIM9	0	genome.wustl.edu	37	14	51448575	51448575	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	51448575	51448575	G	A	SNP	TRIM9	ENST00000338969	human	ensembl	74_37	-1	known	missense	c.2093	p.A698V	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Fibronectin_type3,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM9	HGNC	ENSG00000100505				162	0	0	123	10	7.5188
TRIM9	0	genome.wustl.edu	37	14	51560869	51560869	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	51560869	51560869	G	A	SNP	TRIM9	ENST00000338969	human	ensembl	74_37	-1	known	silent	c.789	p.V263	1.000	pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box	pfam_SPRY_rcpt,pfam_Fibronectin_type3,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM9	HGNC	ENSG00000100505				92	0	0	66	16	19.5122
TRIM9	0	genome.wustl.edu	37	14	51561103	51561103	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	51561103	51561103	G	A	SNP	TRIM9	ENST00000338969	human	ensembl	74_37	-1	known	silent	c.555	p.C185	1.000	superfamily_Znf_FYVE_PHD,smart_Znf_B-box,pfscan_Znf_B-box	pfam_SPRY_rcpt,pfam_Fibronectin_type3,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM9	HGNC	ENSG00000100505				37	0	0	11	4	26.6667
FRMD6	0	genome.wustl.edu	37	14	52169261	52169261	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	52169261	52169261	T	A	SNP	FRMD6	ENST00000344768	human	ensembl	74_37	+1	known	missense	c.326	p.I109N	1.000	pfam_FERM_N,smart_Band_41_domain,pfscan_FERM_domain	pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	-	no_errors	FRMD6	HGNC	ENSG00000139926				181	0	0	125	29	18.8312
NID2	0	genome.wustl.edu	37	14	52477679	52477679	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	52477679	52477679	C	T	SNP	NID2	ENST00000216286	human	ensembl	74_37	-1	known	missense	c.3637	p.A1213T	0.986	pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd_dom,superfamily_GFP,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EG-like_dom,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID2	HGNC	ENSG00000087303				113	0	0	70	22	23.913
TXNDC16	0	genome.wustl.edu	37	14	52981604	52981604	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	52981604	52981604	C	T	SNP	TXNDC16	ENST00000281741	human	ensembl	74_37	-1	known	missense	c.599	p.S200N	0.980	NULL	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TXNDC16	HGNC	ENSG00000087301				214	0	0	141	44	23.7838
ERO1L	0	genome.wustl.edu	37	14	53130502	53130502	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	53130502	53130502	G	A	SNP	ERO1L	ENST00000554019	human	ensembl	74_37	-1	known	silent	c.693	p.C231	0.004	pfam_Ero1	pfam_Ero1	-	no_errors	ERO1L	HGNC	ENSG00000197930				42	0	0	33	12	26.6667
DDHD1	0	genome.wustl.edu	37	14	53525293	53525293	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	53525293	53525293	G	A	SNP	DDHD1	ENST00000323669	human	ensembl	74_37	-1	known	missense	c.1894	p.R632C	1.000	pfam_DDHD,pfscan_DDHD	pfam_DDHD,pfscan_DDHD	-	no_errors	DDHD1	HGNC	ENSG00000100523				72	0	0	57	22	27.8481
SAMD4A	0	genome.wustl.edu	37	14	55251329	55251329	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	55251329	55251329	G	A	SNP	SAMD4A	ENST00000392067	human	ensembl	74_37	+1	known	missense	c.2119	p.A707T	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM	-	no_errors	SAMD4A	HGNC	ENSG00000020577				102	0	0	105	8	7.07965
ATG14	0	genome.wustl.edu	37	14	55836529	55836529	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	55836529	55836529	G	A	SNP	ATG14	ENST00000247178	human	ensembl	74_37	-1	known	silent	c.1287	p.T429	0.018	NULL	pfam_UV_resistance/autophagy_Atg14	-	no_errors	ATG14	HGNC	ENSG00000126775				57	0	0	37	27	42.1875
ATG14	0	genome.wustl.edu	37	14	55836547	55836547	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	55836547	55836547	G	A	SNP	ATG14	ENST00000247178	human	ensembl	74_37	-1	known	silent	c.1269	p.R423	0.000	NULL	pfam_UV_resistance/autophagy_Atg14	-	no_errors	ATG14	HGNC	ENSG00000126775				72	0	0	52	25	32.4675
TBPL2	0	genome.wustl.edu	37	14	55903506	55903506	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	55903506	55903506	G	A	SNP	TBPL2	ENST00000247219	human	ensembl	74_37	-1	known	silent	c.381	p.S127	0.002	NULL	pfam_TBP,prints_TBP	-	no_errors	TBPL2	HGNC	ENSG00000182521				81	0	0	54	25	31.6456
TMEM260	0	genome.wustl.edu	37	14	57085368	57085368	+	Silent	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	57085368	57085368	T	C	SNP	TMEM260	ENST00000261556	human	ensembl	74_37	+1	known	silent	c.1113	p.G371	0.147	NULL	pfam_DUF2723	-	no_errors	TMEM260	HGNC	ENSG00000070269				82	0	0	57	16	21.9178
KIAA0586	0	genome.wustl.edu	37	14	58934588	58934588	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	58934588	58934588	C	T	SNP	KIAA0586	ENST00000556134	human	ensembl	74_37	+1	known	missense	c.2345	p.A782V	1.000	NULL	NULL	-	no_errors	KIAA0586	HGNC	ENSG00000100578				174	0	0	118	19	13.8686
L3HYPDH	0	genome.wustl.edu	37	14	59939804	59939804	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	59939804	59939804	G	A	SNP	L3HYPDH	ENST00000247194	human	ensembl	74_37	-1	known	missense	c.944	p.A315V	0.973	pfam_Pro_racemase_fam,pirsf_Pro_racemase_fam	pfam_Pro_racemase_fam,pirsf_Pro_racemase_fam	-	no_errors	L3HYPDH	HGNC	ENSG00000126790				117	0	0	88	30	25.4237
PCNXL4	0	genome.wustl.edu	37	14	60574805	60574805	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	60574805	60574805	C	T	SNP	PCNXL4	ENST00000404681	human	ensembl	74_37	+1	known	missense	c.449	p.A150V	0.021	NULL	pfam_Pecanex	-	no_errors	PCNXL4	HGNC	ENSG00000126773				73	0	0	44	16	26.6667
PPM1A	0	genome.wustl.edu	37	14	60749747	60749747	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	60749747	60749747	A	G	SNP	PPM1A	ENST00000325642	human	ensembl	74_37	+1	known	missense	c.545	p.D182G	1.000	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	pfam_PP2C-like_dom,pfam_PP2C_C,superfamily_PP2C-like_dom,superfamily_PP2C_C,smart_PP2C-like_dom	-	no_errors	PPM1A	HGNC	ENSG00000100614				138	0	0	97	34	25.9542
PPM1A	0	genome.wustl.edu	37	14	60756574	60756574	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	60756574	60756574	C	T	SNP	PPM1A	ENST00000325642	human	ensembl	74_37	+1	known	missense	c.1222	p.R408C	1.000	pfam_PP2C_C,superfamily_PP2C_C	pfam_PP2C-like_dom,pfam_PP2C_C,superfamily_PP2C-like_dom,superfamily_PP2C_C,smart_PP2C-like_dom	-	no_errors	PPM1A	HGNC	ENSG00000100614				50	0	0	49	11	18.3333
PRKCH	0	genome.wustl.edu	37	14	61997194	61997194	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	61997194	61997194	C	T	SNP	PRKCH	ENST00000332981	human	ensembl	74_37	+1	known	missense	c.1642	p.L548F	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Prot_kin_PKC_delta,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,pfam_C2_dom,superfamily_Kinase-like_dom,superfamily_C2_dom,smart_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	PRKCH	HGNC	ENSG00000027075				188	0	0	163	17	9.44444
PPP2R5E	0	genome.wustl.edu	37	14	63856359	63856359	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	63856359	63856359	C	T	SNP	PPP2R5E	ENST00000337537	human	ensembl	74_37	-1	known	missense	c.1045	p.A349T	1.000	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	-	no_errors	PPP2R5E	HGNC	ENSG00000154001				70	0	0	57	8	12.3077
SYNE2	0	genome.wustl.edu	37	14	64518405	64518405	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	64518405	64518405	G	A	SNP	SYNE2	ENST00000358025	human	ensembl	74_37	+1	known	missense	c.7774	p.D2592N	1.000	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654				108	0	0	55	14	20.2899
SYNE2	0	genome.wustl.edu	37	14	64519034	64519034	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	64519034	64519034	C	T	SNP	SYNE2	ENST00000358025	human	ensembl	74_37	+1	known	silent	c.8403	p.G2801	0.000	smart_Spectrin/alpha-actinin	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654				118	0	0	75	26	25.7426
SYNE2	0	genome.wustl.edu	37	14	64542723	64542723	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	64542723	64542723	C	T	SNP	SYNE2	ENST00000358025	human	ensembl	74_37	+1	known	nonsense	c.10927	p.R3643*	0.995	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654				81	0	0	41	20	32.7869
SYNE2	0	genome.wustl.edu	37	14	64676162	64676162	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	64676162	64676162	C	T	SNP	SYNE2	ENST00000358025	human	ensembl	74_37	+1	known	missense	c.18406	p.R6136C	1.000	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654				56	0	0	33	11	25
SYNE2	0	genome.wustl.edu	37	14	64678805	64678805	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	64678805	64678805	C	T	SNP	SYNE2	ENST00000358025	human	ensembl	74_37	+1	known	missense	c.18850	p.R6284C	1.000	smart_Spectrin/alpha-actinin	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654				139	0	0	100	34	25.3731
HSPA2	0	genome.wustl.edu	37	14	65008477	65008477	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	65008477	65008477	C	T	SNP	HSPA2	ENST00000247207	human	ensembl	74_37	+1	known	missense	c.910	p.R304C	1.000	pfam_Hsp_70_fam,pfam_MreB_Mrl	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA2	HGNC	ENSG00000126803				22	0	0	13	13	50
GPHN	0	genome.wustl.edu	37	14	67389441	67389441	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	67389441	67389441	C	T	SNP	GPHN	ENST00000478722	human	ensembl	74_37	+1	known	missense	c.515	p.A172V	1.000	NULL	pfam_Mopterin-bd_dom,pfam_MoeA_linker/N,pfam_MoeA_C_domain_IV,superfamily_MoeA_linker/N,superfamily_Mopterin-bd_dom,superfamily_MoeA_C_domain_IV,smart_Mopterin-bd_dom,tigrfam_Mo_cofactor_synthesis	-	no_errors	GPHN	HGNC	ENSG00000171723				157	1	0.632911	146	32	17.9775
DCAF5	0	genome.wustl.edu	37	14	69521638	69521638	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	69521638	69521638	G	A	SNP	DCAF5	ENST00000341516	human	ensembl	74_37	-1	known	missense	c.1765	p.R589C	0.998	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF5	HGNC	ENSG00000139990				87	0	0	57	28	32.9412
GALNT16	0	genome.wustl.edu	37	14	69726992	69726992	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	69726992	69726992	C	T	SNP	GALNT16	ENST00000554317	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.011	-	-	-	no_errors	GALNT16	HGNC	ENSG00000100626				14	0	0	4	6	60
GALNT16	0	genome.wustl.edu	37	14	69791495	69791495	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	69791495	69791495	G	A	SNP	GALNT16	ENST00000337827	human	ensembl	74_37	+1	known	missense	c.422	p.R141H	1.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT16	HGNC	ENSG00000100626				40	0	0	27	14	34.1463
GALNT16	0	genome.wustl.edu	37	14	69795264	69795264	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	69795264	69795264	G	A	SNP	GALNT16	ENST00000337827	human	ensembl	74_37	+1	known	silent	c.666	p.P222	1.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT16	HGNC	ENSG00000100626				34	0	0	23	7	23.3333
SLC39A9	0	genome.wustl.edu	37	14	69908873	69908873	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	69908873	69908873	G	A	SNP	SLC39A9	ENST00000555840	human	ensembl	74_37	+1	known	missense	c.293	p.S98N	1.000	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A9	HGNC	ENSG00000029364				138	0	0	110	6	5.17241
SLC39A9	0	genome.wustl.edu	37	14	69925158	69925158	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	69925158	69925158	G	A	SNP	SLC39A9	ENST00000555840	human	ensembl	74_37	+1	known	missense	c.772	p.A258T	1.000	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A9	HGNC	ENSG00000029364				93	0	0	91	7	7.14286
KIAA0247	0	genome.wustl.edu	37	14	70171413	70171413	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	70171413	70171413	C	A	SNP	KIAA0247	ENST00000342745	human	ensembl	74_37	+1	known	missense	c.412	p.L138M	1.000	NULL	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	KIAA0247	HGNC	ENSG00000100647				46	0	0	30	13	30.2326
SMOC1	0	genome.wustl.edu	37	14	70496965	70496965	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	70496965	70496965	G	A	SNP	SMOC1	ENST00000361956	human	ensembl	74_37	+1	known	missense	c.1298	p.R433H	1.000	NULL	pfam_Thyroglobulin_1,pfam_SPARC/Testican_Ca-bd-dom,pfam_Kazal_dom,superfamily_Thyroglobulin_1,smart_Kazal_dom,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	-	no_errors	SMOC1	HGNC	ENSG00000198732				70	0	0	61	6	8.95522
SLC8A3	0	genome.wustl.edu	37	14	70634125	70634125	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	70634125	70634125	C	T	SNP	SLC8A3	ENST00000381269	human	ensembl	74_37	-1	known	missense	c.1015	p.A339T	1.000	tigrfam_Na_Ca_Ex	pfam_NaCa_Exmemb,pfam_Calx_beta,smart_Calx_beta,prints_Na_Ca_Ex,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A3	HGNC	ENSG00000100678				64	0	0	64	14	17.9487
ADAM21P1	0	genome.wustl.edu	37	14	70712602	70712602	+	RNA	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	70712602	70712602	A	G	SNP	ADAM21P1	ENST00000530196	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.439	-	-	-	no_errors	ADAM21P1	HGNC	ENSG00000235812				86	0	0	63	7	10
ADAM21	0	genome.wustl.edu	37	14	70925992	70925992	+	Silent	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	70925992	70925992	T	C	SNP	ADAM21	ENST00000267499	human	ensembl	74_37	+1	known	silent	c.1776	p.G592	0.424	pfam_ADAM_Cys-rich,smart_ADAM_Cys-rich	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM21	HGNC	ENSG00000139985				86	0	0	63	25	28.4091
MAP3K9	0	genome.wustl.edu	37	14	71199485	71199485	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	71199485	71199485	G	A	SNP	MAP3K9	ENST00000555993	human	ensembl	74_37	-1	known	silent	c.2643	p.V881	0.000	pirsf_MAPKKK9/10/11	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,superfamily_Regulat_G_prot_signal_superfam,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_dom	-	no_errors	MAP3K9	HGNC	ENSG00000006432				58	0	0	21	18	46.1538
SIPA1L1	0	genome.wustl.edu	37	14	72137841	72137841	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	72137841	72137841	C	A	SNP	SIPA1L1	ENST00000555818	human	ensembl	74_37	+1	known	missense	c.2261	p.A754D	1.000	pfam_Rap_GAP_dom,pfscan_Rap_GAP_dom	pfam_DUF3401,pfam_Rap_GAP_dom,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L1	HGNC	ENSG00000197555				318	0	0	319	21	6.17647
SIPA1L1	0	genome.wustl.edu	37	14	72190523	72190523	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	72190523	72190523	G	T	SNP	SIPA1L1	ENST00000555818	human	ensembl	74_37	+1	known	missense	c.4431	p.Q1477H	1.000	NULL	pfam_DUF3401,pfam_Rap_GAP_dom,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L1	HGNC	ENSG00000197555				192	0	0	151	25	14.2045
SIPA1L1	0	genome.wustl.edu	37	14	72191399	72191399	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	72191399	72191399	C	T	SNP	SIPA1L1	ENST00000555818	human	ensembl	74_37	+1	known	silent	c.4524	p.S1508	1.000	pfam_DUF3401	pfam_DUF3401,pfam_Rap_GAP_dom,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L1	HGNC	ENSG00000197555				67	0	0	47	21	30.8824
DPF3	0	genome.wustl.edu	37	14	73140989	73140989	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	73140989	73140989	C	T	SNP	DPF3	ENST00000366353	human	ensembl	74_37	-1	known	missense	c.995	p.R332Q	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	DPF3	HGNC	ENSG00000205683				25	0	0	14	3	17.6471
DPF3	0	genome.wustl.edu	37	14	73159844	73159844	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	73159844	73159844	C	T	SNP	DPF3	ENST00000366353	human	ensembl	74_37	-1	known	missense	c.847	p.D283N	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	DPF3	HGNC	ENSG00000205683				109	0	0	63	28	30.7692
HEATR4	0	genome.wustl.edu	37	14	73989372	73989372	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	73989372	73989372	C	T	SNP	HEATR4	ENST00000334988	human	ensembl	74_37	-1	known	missense	c.485	p.R162H	0.000	NULL	pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	HEATR4	HGNC	ENSG00000187105				55	0	0	33	15	31.25
ELMSAN1	0	genome.wustl.edu	37	14	74186094	74186094	+	Silent	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	74186094	74186094	T	C	SNP	ELMSAN1	ENST00000286523	human	ensembl	74_37	-1	known	silent	c.3048	p.L1016	0.000	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	ELMSAN1	HGNC	ENSG00000156030				24	0	0	19	7	26.9231
FAM161B	0	genome.wustl.edu	37	14	74407705	74407705	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	74407705	74407705	C	T	SNP	FAM161B	ENST00000286544	human	ensembl	74_37	-1	known	missense	c.1513	p.G505S	1.000	pfam_UPF0564	pfam_UPF0564	-	no_errors	FAM161B	HGNC	ENSG00000156050				122	0	0	69	31	31
ENSG00000258559	0	genome.wustl.edu	37	14	74760048	74760048	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	74760048	74760048	G	A	SNP	ENSG00000258559	ENST00000554532	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.137	-	-	-	no_errors	AC005519.4	Clone_based_vega_gene	ENSG00000258559				17	0	0	5	6	54.5455
ABCD4	0	genome.wustl.edu	37	14	74763144	74763144	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	74763144	74763144	C	T	SNP	ABCD4	ENST00000356924	human	ensembl	74_37	-1	known	missense	c.434	p.R145H	1.000	pfam_ABC_Peroxi_TM,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_Peroxi_TM,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCD4	HGNC	ENSG00000119688				52	0	0	45	13	22.4138
LTBP2	0	genome.wustl.edu	37	14	74971792	74971792	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	74971792	74971792	C	T	SNP	LTBP2	ENST00000261978	human	ensembl	74_37	-1	known	silent	c.4263	p.A1421	0.000	superfamily_TB_dom	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	LTBP2	HGNC	ENSG00000119681				37	0	0	27	8	22.8571
LTBP2	0	genome.wustl.edu	37	14	74973512	74973512	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	74973512	74973512	C	T	SNP	LTBP2	ENST00000261978	human	ensembl	74_37	-1	known	missense	c.3922	p.A1308T	0.997	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	LTBP2	HGNC	ENSG00000119681				34	0	0	20	7	25.9259
YLPM1	0	genome.wustl.edu	37	14	75265781	75265781	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	75265781	75265781	C	T	SNP	YLPM1	ENST00000325680	human	ensembl	74_37	+1	known	nonsense	c.3781	p.R1261*	1.000	NULL	superfamily_P-loop_NTPase	-	no_errors	YLPM1	HGNC	ENSG00000119596				55	0	0	37	14	27.451
BATF	0	genome.wustl.edu	37	14	76012964	76012964	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	76012964	76012964	G	A	SNP	BATF	ENST00000286639	human	ensembl	74_37	+1	known	missense	c.328	p.A110T	0.017	NULL	pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP,prints_Leuzip_Fos	-	no_errors	BATF	HGNC	ENSG00000156127				18	0	0	8	3	27.2727
TTLL5	0	genome.wustl.edu	37	14	76135826	76135826	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	76135826	76135826	G	A	SNP	TTLL5	ENST00000298832	human	ensembl	74_37	+1	known	missense	c.142	p.A48T	1.000	NULL	pfam_TTL/TTLL_fam	-	no_errors	TTLL5	HGNC	ENSG00000119685				140	0	0	81	28	25.6881
IFT43	0	genome.wustl.edu	37	14	76542994	76542994	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	76542994	76542994	G	A	SNP	IFT43	ENST00000238628	human	ensembl	74_37	+1	known	silent	c.270	p.T90	0.000	NULL	NULL	-	no_errors	IFT43	HGNC	ENSG00000119650				63	0	0	45	17	27.4194
ANGEL1	0	genome.wustl.edu	37	14	77255579	77255579	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	77255579	77255579	C	T	SNP	ANGEL1	ENST00000251089	human	ensembl	74_37	-1	known	missense	c.2005	p.A669T	0.997	NULL	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	-	no_errors	ANGEL1	HGNC	ENSG00000013523				157	0	0	147	10	6.36943
VIPAS39	0	genome.wustl.edu	37	14	77910662	77910662	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	77910662	77910662	C	T	SNP	VIPAS39	ENST00000343765	human	ensembl	74_37	-1	known	missense	c.527	p.R176H	1.000	pfam_Golgin_subfamily_A_member_5	pfam_Golgin_subfamily_A_member_5	-	no_errors	VIPAS39	HGNC	ENSG00000151445				62	0	0	48	5	9.43396
ALKBH1	0	genome.wustl.edu	37	14	78146264	78146264	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	78146264	78146264	G	A	SNP	ALKBH1	ENST00000216489	human	ensembl	74_37	-1	known	missense	c.505	p.R169C	1.000	tigrfam_Alkb	tigrfam_Alkb	-	no_errors	ALKBH1	HGNC	ENSG00000100601				98	0	0	74	8	9.7561
ADCK1	0	genome.wustl.edu	37	14	78397931	78397931	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	78397931	78397931	G	A	SNP	ADCK1	ENST00000238561	human	ensembl	74_37	+1	known	missense	c.1277	p.R426H	1.000	NULL	pfam_UbiB_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom	-	no_errors	ADCK1	HGNC	ENSG00000063761				36	0	0	30	11	26.8293
CEP128	0	genome.wustl.edu	37	14	81329141	81329141	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	81329141	81329141	C	T	SNP	CEP128	ENST00000281129	human	ensembl	74_37	-1	known	missense	c.722	p.R241H	0.894	NULL	NULL	-	no_errors	CEP128	HGNC	ENSG00000100629				103	0	0	83	23	21.6981
TSHR	0	genome.wustl.edu	37	14	81422084	81422084	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	81422084	81422084	C	T	SNP	TSHR	ENST00000298171	human	ensembl	74_37	+1	known	silent	c.60	p.G20	0.000	prints_TSH_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_TSH_rcpt,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn,prints_FSH_rcpt,prints_LSH_rcpt	-	no_errors	TSHR	HGNC	ENSG00000165409				114	0	0	73	5	6.41026
SEL1L	0	genome.wustl.edu	37	14	81952724	81952724	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	81952724	81952724	G	A	SNP	SEL1L	ENST00000336735	human	ensembl	74_37	-1	known	silent	c.1707	p.G569	0.000	NULL	pfam_Sel1-like,pfam_FN_type2_col-bd,superfamily_Kringle-like,smart_FN_type2_col-bd,smart_Sel1-like,pfscan_FN_type2_col-bd	-	no_errors	SEL1L	HGNC	ENSG00000071537				273	0	0	250	17	6.36704
FLRT2	0	genome.wustl.edu	37	14	86089506	86089506	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	86089506	86089506	G	A	SNP	FLRT2	ENST00000330753	human	ensembl	74_37	+1	known	missense	c.1648	p.A550T	0.997	NULL	pfam_Leu-rich_rpt,pfam_Fibronectin_type3,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Fibronectin_type3	-	no_errors	FLRT2	HGNC	ENSG00000185070				85	0	0	48	31	39.2405
GALC	0	genome.wustl.edu	37	14	88401080	88401080	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	88401080	88401080	C	T	SNP	GALC	ENST00000261304	human	ensembl	74_37	-1	known	missense	c.2054	p.R685H	0.000	pfam_Glyco_hydro_59	pfam_Glyco_hydro_59,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_59	-	no_errors	GALC	HGNC	ENSG00000054983				104	0	0	70	11	13.5802
GALC	0	genome.wustl.edu	37	14	88434718	88434718	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	88434718	88434718	C	T	SNP	GALC	ENST00000261304	human	ensembl	74_37	-1	known	missense	c.869	p.R290H	1.000	pfam_Glyco_hydro_59,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_59	pfam_Glyco_hydro_59,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_59	-	no_errors	GALC	HGNC	ENSG00000054983				146	1	0.680272	103	25	19.5312
FOXN3	0	genome.wustl.edu	37	14	89647121	89647121	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	89647121	89647121	G	A	SNP	FOXN3	ENST00000261302	human	ensembl	74_37	-1	known	missense	c.841	p.R281W	0.964	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXN3	HGNC	ENSG00000053254				10	0	0	11	5	31.25
NRDE2	0	genome.wustl.edu	37	14	90755095	90755095	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	90755095	90755095	C	T	SNP	NRDE2	ENST00000354366	human	ensembl	74_37	-1	known	missense	c.2624	p.R875Q	1.000	NULL	pfam_NRDE-2	-	no_errors	NRDE2	HGNC	ENSG00000119720				67	0	0	57	13	18.5714
NRDE2	0	genome.wustl.edu	37	14	90769464	90769464	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	90769464	90769464	C	A	SNP	NRDE2	ENST00000354366	human	ensembl	74_37	-1	known	missense	c.1011	p.E337D	1.000	pfam_NRDE-2	pfam_NRDE-2	-	no_errors	NRDE2	HGNC	ENSG00000119720				60	0	0	46	12	20.6897
NRDE2	0	genome.wustl.edu	37	14	90784357	90784357	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	90784357	90784357	C	T	SNP	NRDE2	ENST00000354366	human	ensembl	74_37	-1	known	silent	c.165	p.P55	0.000	NULL	pfam_NRDE-2	-	no_errors	NRDE2	HGNC	ENSG00000119720				111	0	0	84	11	11.5789
CATSPERB	0	genome.wustl.edu	37	14	92076988	92076988	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	92076988	92076988	C	T	SNP	CATSPERB	ENST00000256343	human	ensembl	74_37	-1	known	missense	c.2434	p.A812T	0.454	NULL	superfamily_Sialidases	-	no_errors	CATSPERB	HGNC	ENSG00000133962				68	0	0	44	13	22.807
RIN3	0	genome.wustl.edu	37	14	93125612	93125612	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	93125612	93125612	G	C	SNP	RIN3	ENST00000216487	human	ensembl	74_37	+1	known	missense	c.2133	p.Q711H	1.000	pfscan_VPS9	pfam_VPS9,smart_SH2,smart_VPS9_subgr,pfscan_Ras-assoc,pfscan_SH2,pfscan_VPS9	-	no_errors	RIN3	HGNC	ENSG00000100599				170	0	0	167	14	7.73481
RIN3	0	genome.wustl.edu	37	14	93125643	93125643	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	93125643	93125643	A	G	SNP	RIN3	ENST00000216487	human	ensembl	74_37	+1	known	missense	c.2164	p.T722A	1.000	pfscan_VPS9	pfam_VPS9,smart_SH2,smart_VPS9_subgr,pfscan_Ras-assoc,pfscan_SH2,pfscan_VPS9	-	no_errors	RIN3	HGNC	ENSG00000100599				123	1	0.806452	103	31	23.1343
UNC79	0	genome.wustl.edu	37	14	94088106	94088106	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	94088106	94088106	G	A	SNP	UNC79	ENST00000553484	human	ensembl	74_37	+1	known	silent	c.4593	p.S1531	1.000	superfamily_ARM-type_fold	superfamily_P-loop_NTPase,superfamily_ARM-type_fold	-	no_errors	UNC79	HGNC	ENSG00000133958				102	0	0	94	12	11.3208
UNC79	0	genome.wustl.edu	37	14	94103626	94103626	+	Silent	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	94103626	94103626	A	G	SNP	UNC79	ENST00000553484	human	ensembl	74_37	+1	known	silent	c.5964	p.G1988	0.995	superfamily_ARM-type_fold	superfamily_P-loop_NTPase,superfamily_ARM-type_fold	-	no_errors	UNC79	HGNC	ENSG00000133958				59	0	0	60	4	6.25
UNC79	0	genome.wustl.edu	37	14	94120164	94120164	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	94120164	94120164	G	A	SNP	UNC79	ENST00000553484	human	ensembl	74_37	+1	known	missense	c.6343	p.G2115S	1.000	superfamily_ARM-type_fold	superfamily_P-loop_NTPase,superfamily_ARM-type_fold	-	no_errors	UNC79	HGNC	ENSG00000133958				174	0	0	122	40	24.6914
FAM181A	0	genome.wustl.edu	37	14	94394715	94394715	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	94394715	94394715	C	T	SNP	FAM181A	ENST00000267594	human	ensembl	74_37	+1	known	silent	c.270	p.S90	0.000	NULL	NULL	-	no_errors	FAM181A	HGNC	ENSG00000140067				23	0	0	20	5	20
ASB2	0	genome.wustl.edu	37	14	94405768	94405768	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	94405768	94405768	C	T	SNP	ASB2	ENST00000315988	human	ensembl	74_37	-1	known	missense	c.1159	p.A387T	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C,prints_Ankyrin_rpt	-	no_errors	ASB2	HGNC	ENSG00000100628				14	0	0	8	7	46.6667
ASB2	0	genome.wustl.edu	37	14	94417565	94417565	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	94417565	94417565	G	A	SNP	ASB2	ENST00000315988	human	ensembl	74_37	-1	known	silent	c.516	p.A172	0.011	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C,prints_Ankyrin_rpt	-	no_errors	ASB2	HGNC	ENSG00000100628				56	0	0	45	5	10
DDX24	0	genome.wustl.edu	37	14	94528700	94528700	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	94528700	94528700	G	A	SNP	DDX24	ENST00000330836	human	ensembl	74_37	-1	known	missense	c.986	p.A329V	0.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX24	HGNC	ENSG00000089737				168	0	0	104	43	29.2517
SERPINA11	0	genome.wustl.edu	37	14	94914995	94914995	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	94914995	94914995	C	T	SNP	SERPINA11	ENST00000334708	human	ensembl	74_37	-1	known	silent	c.117	p.Q39	0.001	superfamily_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINA11	HGNC	ENSG00000186910				124	0	0	108	6	5.26316
SERPINA12	0	genome.wustl.edu	37	14	94964324	94964324	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	94964324	94964324	C	T	SNP	SERPINA12	ENST00000341228	human	ensembl	74_37	-1	known	silent	c.411	p.T137	0.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINA12	HGNC	ENSG00000165953				101	0	0	71	16	18.3908
CLMN	0	genome.wustl.edu	37	14	95682030	95682030	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	95682030	95682030	C	T	SNP	CLMN	ENST00000298912	human	ensembl	74_37	-1	known	missense	c.365	p.G122D	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	CLMN	HGNC	ENSG00000165959				89	0	0	65	5	7.14286
SYNE3	0	genome.wustl.edu	37	14	95922035	95922035	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	95922035	95922035	G	A	SNP	SYNE3	ENST00000334258	human	ensembl	74_37	-1	known	silent	c.816	p.G272	0.001	smart_Spectrin/alpha-actinin	pfam_KASH,pfam_Spectrin_repeat,superfamily_Retrov_capsid_C,smart_Spectrin/alpha-actinin,pfscan_KASH	-	no_errors	SYNE3	HGNC	ENSG00000176438				99	0	0	89	8	8.24742
BDKRB2	0	genome.wustl.edu	37	14	96707401	96707401	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	96707401	96707401	C	T	SNP	BDKRB2	ENST00000306005	human	ensembl	74_37	+1	known	nonsense	c.736	p.Q246*	0.013	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Brdyknn_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Brdyknn_2_rcpt,prints_GPCR_Rhodpsn,prints_Brdyknn_rcpt,prints_ATII_rcpt	-	no_errors	BDKRB2	HGNC	ENSG00000168398				41	0	0	37	7	15.9091
BDKRB1	0	genome.wustl.edu	37	14	96730746	96730746	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	96730746	96730746	C	T	SNP	BDKRB1	ENST00000216629	human	ensembl	74_37	+1	known	missense	c.727	p.R243C	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Brdyknn_1_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Brdyknn_1_rcpt,prints_GPCR_Rhodpsn,prints_Brdyknn_rcpt	-	no_errors	BDKRB1	HGNC	ENSG00000100739				51	0	0	35	6	14.6341
ATG2B	0	genome.wustl.edu	37	14	96756089	96756089	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	96756089	96756089	C	T	SNP	ATG2B	ENST00000359933	human	ensembl	74_37	-1	known	silent	c.5910	p.E1970	0.998	NULL	pfam_Autophagy-rel_C	-	no_errors	ATG2B	HGNC	ENSG00000066739				83	0	0	73	12	14.1176
SETD3	0	genome.wustl.edu	37	14	99865307	99865307	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	99865307	99865307	C	T	SNP	SETD3	ENST00000331768	human	ensembl	74_37	-1	known	silent	c.1494	p.P498	0.430	superfamily_Rubisco_LSMT_subst-bd	pfam_Rubisco_LSMT_subst-bd,pfam_SET_dom,superfamily_Rubisco_LSMT_subst-bd	-	no_errors	SETD3	HGNC	ENSG00000183576				160	0	0	121	7	5.46875
SETD3	0	genome.wustl.edu	37	14	99932082	99932082	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	99932082	99932082	A	G	SNP	SETD3	ENST00000331768	human	ensembl	74_37	-1	known	missense	c.61	p.S21P	1.000	NULL	pfam_Rubisco_LSMT_subst-bd,pfam_SET_dom,superfamily_Rubisco_LSMT_subst-bd	-	no_errors	SETD3	HGNC	ENSG00000183576				58	0	0	56	7	11.1111
LRRK1	0	genome.wustl.edu	37	15	101567506	101567506	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	101567506	101567506	C	T	SNP	LRRK1	ENST00000388948	human	ensembl	74_37	+1	known	nonsense	c.2446	p.R816*	1.000	superfamily_P-loop_NTPase	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Leu-rich_rpt,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,superfamily_WD40_repeat_dom,smart_Ankyrin_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_dom	-	no_errors	LRRK1	HGNC	ENSG00000154237				44	0	0	29	21	42
WASH3P	0	genome.wustl.edu	37	15	102515299	102515299	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	102515299	102515299	G	A	SNP	WASH3P	ENST00000557932	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	WASH3P	HGNC	ENSG00000185596				16	0	0	15	4	21.0526
CHEK2P2	0	genome.wustl.edu	37	15	20496632	20496632	+	RNA	SNP	A	A	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	20496632	20496632	A	C	SNP	CHEK2P2	ENST00000555186	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.365	-	-	-	no_errors	CHEK2P2	HGNC	ENSG00000259156				93	0	0	62	5	7.46269
OR4N4	0	genome.wustl.edu	37	15	22383015	22383015	+	Silent	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	22383015	22383015	C	A	SNP	OR4N4	ENST00000328795	human	ensembl	74_37	+1	known	silent	c.543	p.V181	0.234	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4N4	HGNC	ENSG00000183706				142	0	0	100	16	13.7931
CYFIP1	0	genome.wustl.edu	37	15	22945147	22945147	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	22945147	22945147	G	A	SNP	CYFIP1	ENST00000313077	human	ensembl	74_37	+1	known	silent	c.1218	p.A406	0.003	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub,prints_Cytoplasmic_FMR1-int	-	no_errors	CYFIP1	HGNC	ENSG00000068793				14	0	0	11	7	38.8889
CYFIP1	0	genome.wustl.edu	37	15	22997826	22997826	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	22997826	22997826	C	T	SNP	CYFIP1	ENST00000313077	human	ensembl	74_37	+1	known	silent	c.3072	p.H1024	0.265	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub,prints_Cytoplasmic_FMR1-int	-	no_errors	CYFIP1	HGNC	ENSG00000068793				196	1	0.507614	186	14	7
HERC2P2	0	genome.wustl.edu	37	15	23285440	23285440	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	23285440	23285440	G	A	SNP	HERC2P2	ENST00000558398	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	HERC2P2	HGNC	ENSG00000140181				19	0	0	15	5	25
HERC2P2	0	genome.wustl.edu	37	15	23300044	23300044	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	23300044	23300044	G	A	SNP	HERC2P2	ENST00000560464	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HERC2P2	HGNC	ENSG00000140181				24	0	0	11	3	21.4286
GOLGA6L2	0	genome.wustl.edu	37	15	23687625	23687625	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	23687625	23687625	C	T	SNP	GOLGA6L2	ENST00000312015	human	ensembl	74_37	-1	known	missense	c.622	p.A208T	0.000	NULL	prints_Tropomyosin	-	no_errors	GOLGA6L2	HGNC	ENSG00000174450				50	0	0	32	5	13.5135
MKRN3	0	genome.wustl.edu	37	15	23812066	23812066	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	23812066	23812066	G	T	SNP	MKRN3	ENST00000314520	human	ensembl	74_37	+1	known	missense	c.1137	p.E379D	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	MKRN3	HGNC	ENSG00000179455				98	0	0	88	9	9.27835
NDN	0	genome.wustl.edu	37	15	23931741	23931741	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	23931741	23931741	G	A	SNP	NDN	ENST00000331837	human	ensembl	74_37	-1	known	silent	c.624	p.S208	0.731	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	NDN	HGNC	ENSG00000182636				31	0	0	17	4	19.0476
NPAP1	0	genome.wustl.edu	37	15	24922492	24922492	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	24922492	24922492	T	A	SNP	NPAP1	ENST00000329468	human	ensembl	74_37	+1	known	missense	c.1478	p.L493H	0.000	NULL	NULL	-	no_errors	NPAP1	HGNC	ENSG00000185823				291	0	0	169	66	28.0851
SNORD116-8	0	genome.wustl.edu	37	15	25315649	25315649	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	25315649	25315649	G	A	SNP	SNORD116-8	ENST00000384365	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.143	-	-	-	no_errors	SNORD116-8	HGNC	ENSG00000207093				157	0	0	100	43	30.0699
SNORD116-9	0	genome.wustl.edu	37	15	25318322	25318322	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	25318322	25318322	C	T	SNP	SNORD116-9	ENST00000384000	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SNORD116-9	HGNC	ENSG00000206727				198	1	0.502513	148	11	6.91824
ATP10A	0	genome.wustl.edu	37	15	25932965	25932965	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	25932965	25932965	G	A	SNP	ATP10A	ENST00000356865	human	ensembl	74_37	-1	known	missense	c.3176	p.A1059V	1.000	superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP10A	HGNC	ENSG00000206190				173	0	0	130	7	5.10949
HERC2	0	genome.wustl.edu	37	15	28366571	28366571	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	28366571	28366571	G	A	SNP	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	missense	c.13193	p.A4398V	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731				56	0	0	28	16	36.3636
HERC2	0	genome.wustl.edu	37	15	28389918	28389918	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	28389918	28389918	G	A	SNP	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	missense	c.11041	p.R3681C	1.000	superfamily_CUB_dom	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731				35	0	0	27	4	12.9032
HERC2	0	genome.wustl.edu	37	15	28447611	28447611	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	28447611	28447611	C	T	SNP	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	silent	c.7362	p.S2454	0.029	superfamily_UBA-like	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731				8	0	0	6	4	40
HERC2	0	genome.wustl.edu	37	15	28501354	28501354	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	28501354	28501354	G	A	SNP	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	missense	c.2627	p.A876V	0.986	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731				23	0	0	18	7	28
APBA2	0	genome.wustl.edu	37	15	29397673	29397673	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	29397673	29397673	G	A	SNP	APBA2	ENST00000558259	human	ensembl	74_37	+1	known	missense	c.1616	p.S539N	1.000	superfamily_PDZ,pfscan_PTB/PI_dom	pfam_PTB/PI_dom,pfam_PDZ,superfamily_PDZ,smart_PTB/PI_dom,smart_PDZ,pfscan_PDZ,pfscan_PTB/PI_dom	-	no_errors	APBA2	HGNC	ENSG00000034053				66	0	0	31	6	16.2162
MTMR10	0	genome.wustl.edu	37	15	31253201	31253201	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	31253201	31253201	C	T	SNP	MTMR10	ENST00000435680	human	ensembl	74_37	-1	known	missense	c.641	p.S214N	0.014	NULL	pfam_Myotubularin_assoc,pfam_Myotubularin-like_Pase_dom	-	no_errors	MTMR10	HGNC	ENSG00000166912				20	0	0	12	3	20
TRPM1	0	genome.wustl.edu	37	15	31362319	31362319	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	31362319	31362319	G	T	SNP	TRPM1	ENST00000542188	human	ensembl	74_37	-1	known	missense	c.245	p.S82Y	0.702	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM1	HGNC	ENSG00000134160				471	0	0	417	29	6.50224
RYR3	0	genome.wustl.edu	37	15	34072492	34072492	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	34072492	34072492	G	A	SNP	RYR3	ENST00000389232	human	ensembl	74_37	+1	known	missense	c.9218	p.R3073H	0.564	superfamily_ARM-type_fold	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838				42	0	0	35	8	18.6047
RYR3	0	genome.wustl.edu	37	15	34130165	34130165	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	34130165	34130165	C	T	SNP	RYR3	ENST00000389232	human	ensembl	74_37	+1	known	missense	c.11984	p.A3995V	1.000	superfamily_ARM-type_fold	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838				166	0	0	157	14	8.18713
RYR3	0	genome.wustl.edu	37	15	34134153	34134153	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	34134153	34134153	C	T	SNP	RYR3	ENST00000389232	human	ensembl	74_37	+1	known	missense	c.13126	p.R4376W	0.018	pfam_Ryanrecept_TM4-6,superfamily_4_helix_cytokine-like_core	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838				15	0	0	23	6	20.6897
EMC7	0	genome.wustl.edu	37	15	34393956	34393956	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	34393956	34393956	C	T	SNP	EMC7	ENST00000256545	human	ensembl	74_37	-1	known	missense	c.85	p.A29T	0.925	NULL	pfam_DUF2012,superfamily_Carb-bd-like_fold	-	no_errors	EMC7	HGNC	ENSG00000134153				95	0	0	62	25	28.7356
ZNF770	0	genome.wustl.edu	37	15	35274899	35274899	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	35274899	35274899	G	A	SNP	ZNF770	ENST00000356321	human	ensembl	74_37	-1	known	missense	c.737	p.A246V	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF770	HGNC	ENSG00000198146				51	0	0	40	17	29.8246
MEIS2	0	genome.wustl.edu	37	15	37184485	37184485	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	37184485	37184485	G	A	SNP	MEIS2	ENST00000561208	human	ensembl	74_37	-1	known	silent	c.1323	p.H441	1.000	NULL	pfam_Homeobox_dom,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	MEIS2	HGNC	ENSG00000134138				315	0	0	273	15	5.20833
RASGRP1	0	genome.wustl.edu	37	15	38800067	38800067	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	38800067	38800067	C	A	SNP	RASGRP1	ENST00000310803	human	ensembl	74_37	-1	known	missense	c.1102	p.A368S	1.000	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_EF_hand_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_EF_hand_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N,prints_DAG/PE-bd	-	no_errors	RASGRP1	HGNC	ENSG00000172575				44	0	0	23	15	39.4737
C15orf53	0	genome.wustl.edu	37	15	38990598	38990598	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	38990598	38990598	G	A	SNP	C15orf53	ENST00000318792	human	ensembl	74_37	+1	known	missense	c.392	p.R131H	0.000	NULL	NULL	-	no_errors	C15orf53	HGNC	ENSG00000175779				50	0	0	31	8	20.5128
THBS1	0	genome.wustl.edu	37	15	39885659	39885659	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	39885659	39885659	C	T	SNP	THBS1	ENST00000260356	human	ensembl	74_37	+1	known	silent	c.3057	p.D1019	0.999	pfam_Thrombospondin_C,superfamily_ConA-like_lec_gl_sf	pfam_Thrombospondin_C,pfam_Thrombospondin_1_rpt,pfam_VWF_C,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Thrombospondin_1_rpt,smart_Laminin_G,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	THBS1	HGNC	ENSG00000137801				209	0	0	175	18	9.32642
GPR176	0	genome.wustl.edu	37	15	40094085	40094085	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	40094085	40094085	C	T	SNP	GPR176	ENST00000561100	human	ensembl	74_37	-1	known	missense	c.796	p.A266T	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR176	HGNC	ENSG00000166073				55	0	0	36	15	29.4118
PLCB2	0	genome.wustl.edu	37	15	40585208	40585208	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	40585208	40585208	C	T	SNP	PLCB2	ENST00000260402	human	ensembl	74_37	-1	known	missense	c.2245	p.A749T	1.000	pirsf_PLC-beta,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLC-beta_C,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,prints_Pinositol_PLipase_C,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB2	HGNC	ENSG00000137841				100	0	0	57	21	26.9231
PLCB2	0	genome.wustl.edu	37	15	40591154	40591154	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	40591154	40591154	G	A	SNP	PLCB2	ENST00000260402	human	ensembl	74_37	-1	known	missense	c.695	p.A232V	1.000	pirsf_PLC-beta,pfam_PLipase_C_EF-hand-like	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLC-beta_C,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,prints_Pinositol_PLipase_C,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB2	HGNC	ENSG00000137841				131	0	0	84	8	8.69565
INO80	0	genome.wustl.edu	37	15	41276493	41276493	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	41276493	41276493	T	C	SNP	INO80	ENST00000361937	human	ensembl	74_37	-1	known	missense	c.3979	p.I1327V	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	INO80	HGNC	ENSG00000128908				67	0	0	40	11	21.5686
RPAP1	0	genome.wustl.edu	37	15	41829150	41829150	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	41829150	41829150	C	G	SNP	RPAP1	ENST00000304330	human	ensembl	74_37	-1	known	missense	c.174	p.M58I	0.174	NULL	pfam_RNA_pol_II_AP1_C,pfam_RNA_pol_II_AP1_N,superfamily_ARM-type_fold	-	no_errors	RPAP1	HGNC	ENSG00000103932				154	0	0	122	10	7.57576
MGA	0	genome.wustl.edu	37	15	41961288	41961288	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	41961288	41961288	C	T	SNP	MGA	ENST00000219905	human	ensembl	74_37	+1	known	missense	c.196	p.L66F	1.000	NULL	pfam_TF_T-box,pfam_bHLH_dom,superfamily_p53-like_TF_DNA-bd,superfamily_bHLH_dom,smart_TF_T-box,smart_bHLH_dom,pfscan_bHLH_dom,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	MGA	HGNC	ENSG00000174197				129	0	0	85	34	28.5714
MAPKBP1	0	genome.wustl.edu	37	15	42105237	42105237	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	42105237	42105237	T	A	SNP	MAPKBP1	ENST00000456763	human	ensembl	74_37	+1	known	missense	c.757	p.S253T	0.988	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	MAPKBP1	HGNC	ENSG00000137802				125	0	0	123	7	5.38462
JMJD7-PLA2G4B	0	genome.wustl.edu	37	15	42132384	42132384	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	42132384	42132384	C	T	SNP	JMJD7-PLA2G4B	ENST00000382448	human	ensembl	74_37	+1	known	missense	c.731	p.T244M	0.835	pfam_C2_dom,superfamily_C2_dom,smart_JmjC_dom,smart_C2_dom,pfscan_JmjC_dom,pfscan_C2_dom	pfam_LysoPLipase_cat_dom,pfam_C2_dom,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_dom,smart_JmjC_dom,smart_C2_dom,smart_LysoPLipase_cat_dom,pfscan_JmjC_dom,pfscan_C2_dom,pfscan_LysoPLipase_cat_dom	-	no_errors	JMJD7-PLA2G4B	HGNC	ENSG00000168970				33	0	0	23	7	23.3333
PLA2G4F	0	genome.wustl.edu	37	15	42436328	42436328	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	42436328	42436328	C	T	SNP	PLA2G4F	ENST00000397272	human	ensembl	74_37	-1	known	missense	c.1996	p.A666T	0.033	superfamily_Acyl_Trfase/lysoPLipase,smart_LysoPLipase_cat_dom,pfscan_LysoPLipase_cat_dom	pfam_LysoPLipase_cat_dom,pfam_C2_dom,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_dom,smart_C2_dom,smart_LysoPLipase_cat_dom,pfscan_C2_dom,pfscan_LysoPLipase_cat_dom	-	no_errors	PLA2G4F	HGNC	ENSG00000168907				70	0	0	39	10	20.4082
TGM5	0	genome.wustl.edu	37	15	43552444	43552444	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	43552444	43552444	C	T	SNP	TGM5	ENST00000220420	human	ensembl	74_37	-1	known	missense	c.242	p.R81H	0.000	pfam_Transglutaminase_N,superfamily_Ig_E-set	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM5	HGNC	ENSG00000104055				25	0	0	22	5	18.5185
TUBGCP4	0	genome.wustl.edu	37	15	43696001	43696001	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	43696001	43696001	C	T	SNP	TUBGCP4	ENST00000566251	human	ensembl	74_37	+1	known	missense	c.154	p.R52C	0.981	NULL	NULL	-	no_errors	TUBGCP4	HGNC	ENSG00000137822				29	0	0	19	11	36.6667
PPIP5K1	0	genome.wustl.edu	37	15	43826900	43826900	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	43826900	43826900	G	A	SNP	PPIP5K1	ENST00000420765	human	ensembl	74_37	-1	known	missense	c.4274	p.A1425V	0.051	NULL	pfam_His_Pase_superF_clade-2,superfamily_Cys_alpha_HP_mot_SF	-	no_errors	PPIP5K1	HGNC	ENSG00000168781				162	0	0	161	10	5.84795
CATSPER2	0	genome.wustl.edu	37	15	43924939	43924939	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	43924939	43924939	C	T	SNP	CATSPER2	ENST00000321596	human	ensembl	74_37	-1	known	missense	c.1372	p.E458K	0.001	NULL	pfam_Ion_trans_dom	-	no_errors	CATSPER2	HGNC	ENSG00000166762				73	0	0	51	23	31.0811
WDR76	0	genome.wustl.edu	37	15	44120406	44120406	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	44120406	44120406	T	A	SNP	WDR76	ENST00000263795	human	ensembl	74_37	+1	known	missense	c.304	p.S102T	0.259	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR76	HGNC	ENSG00000092470				118	0	0	77	40	34.188
DUOX2	0	genome.wustl.edu	37	15	45391910	45391910	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	45391910	45391910	G	A	SNP	DUOX2	ENST00000389039	human	ensembl	74_37	-1	known	missense	c.3365	p.A1122V	0.998	pfam_Fe3_Rdtase_TM_dom	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF_hand_dom,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr,prints_Recoverin	-	no_errors	DUOX2	HGNC	ENSG00000140279				96	0	0	53	22	29.3333
SLC30A4	0	genome.wustl.edu	37	15	45777398	45777398	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	45777398	45777398	T	C	SNP	SLC30A4	ENST00000261867	human	ensembl	74_37	-1	known	missense	c.1253	p.D418G	0.008	NULL	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A4	HGNC	ENSG00000104154				41	0	0	31	12	27.907
SEMA6D	0	genome.wustl.edu	37	15	48052028	48052028	+	Silent	SNP	G	G	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	48052028	48052028	G	C	SNP	SEMA6D	ENST00000316364	human	ensembl	74_37	+1	known	silent	c.33	p.L11	0.998	NULL	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom	-	no_errors	SEMA6D	HGNC	ENSG00000137872				59	0	0	54	3	5.26316
SEMA6D	0	genome.wustl.edu	37	15	48054484	48054484	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	48054484	48054484	G	A	SNP	SEMA6D	ENST00000316364	human	ensembl	74_37	+1	known	missense	c.626	p.R209H	0.999	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom	-	no_errors	SEMA6D	HGNC	ENSG00000137872				84	0	0	65	5	7.14286
SLC12A1	0	genome.wustl.edu	37	15	48518712	48518712	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	48518712	48518712	C	A	SNP	SLC12A1	ENST00000380993	human	ensembl	74_37	+1	known	missense	c.668	p.T223N	1.000	pfam_AA-permease/SLC12A_dom,tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,pfam_AA_permease_N,prints_Na/K/Cl_cotranspt2,prints_Na/K/Cl_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A1	HGNC	ENSG00000074803				61	0	0	47	17	26.5625
FBN1	0	genome.wustl.edu	37	15	48791196	48791196	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	48791196	48791196	G	A	SNP	FBN1	ENST00000316623	human	ensembl	74_37	-1	known	missense	c.2153	p.T718M	0.998	superfamily_TB_dom,pirsf_FBN	pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147				165	0	0	151	11	6.79012
FBN1	0	genome.wustl.edu	37	15	48936939	48936939	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	48936939	48936939	C	T	SNP	FBN1	ENST00000316623	human	ensembl	74_37	-1	known	missense	c.28	p.A10T	0.845	pirsf_FBN	pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147				52	0	0	28	9	24.3243
SECISBP2L	0	genome.wustl.edu	37	15	49304895	49304895	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	49304895	49304895	C	T	SNP	SECISBP2L	ENST00000559471	human	ensembl	74_37	-1	known	missense	c.1681	p.G561R	1.000	NULL	pfam_Ribosomal_L7Ae/L30e/S12e/Gad45	-	no_errors	SECISBP2L	HGNC	ENSG00000138593				142	0	0	96	32	25
FAM227B	0	genome.wustl.edu	37	15	49903459	49903459	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	49903459	49903459	G	A	SNP	FAM227B	ENST00000299338	human	ensembl	74_37	-1	known	nonsense	c.58	p.Q20*	0.010	NULL	NULL	-	no_errors	FAM227B	HGNC	ENSG00000166262				43	0	0	35	13	27.0833
DTWD1	0	genome.wustl.edu	37	15	49924402	49924402	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	49924402	49924402	G	A	SNP	DTWD1	ENST00000251250	human	ensembl	74_37	+1	known	missense	c.311	p.G104D	1.000	pfam_DTW	pfam_DTW	-	no_errors	DTWD1	HGNC	ENSG00000104047				72	0	0	49	9	15.5172
SLC27A2	0	genome.wustl.edu	37	15	50494717	50494717	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	50494717	50494717	G	A	SNP	SLC27A2	ENST00000267842	human	ensembl	74_37	+1	known	missense	c.722	p.R241H	0.964	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	SLC27A2	HGNC	ENSG00000140284				131	1	0.757576	79	33	29.4643
MAPK6	0	genome.wustl.edu	37	15	52356133	52356133	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	52356133	52356133	C	T	SNP	MAPK6	ENST00000261845	human	ensembl	74_37	+1	known	missense	c.1102	p.P368S	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_MAPK_ERK3/4	-	no_errors	MAPK6	HGNC	ENSG00000069956				88	0	0	81	7	7.95455
BCL2L10	0	genome.wustl.edu	37	15	52402115	52402115	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	52402115	52402115	T	C	SNP	BCL2L10	ENST00000260442	human	ensembl	74_37	-1	known	missense	c.545	p.Q182R	0.001	NULL	pfam_Blc2_fam,pfscan_Bcl2-like	-	no_errors	BCL2L10	HGNC	ENSG00000137875				170	0	0	135	11	7.53425
MYO5C	0	genome.wustl.edu	37	15	52497304	52497304	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	52497304	52497304	G	A	SNP	MYO5C	ENST00000261839	human	ensembl	74_37	-1	known	silent	c.4578	p.S1526	0.220	pfscan_Dilute	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5C	HGNC	ENSG00000128833				98	0	0	50	17	25.3731
MYO5C	0	genome.wustl.edu	37	15	52571811	52571811	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	52571811	52571811	C	T	SNP	MYO5C	ENST00000261839	human	ensembl	74_37	-1	known	missense	c.199	p.V67M	1.000	superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5C	HGNC	ENSG00000128833				47	0	0	30	17	36.1702
DYX1C1	0	genome.wustl.edu	37	15	55724799	55724799	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	55724799	55724799	G	A	SNP	DYX1C1	ENST00000321149	human	ensembl	74_37	-1	known	missense	c.1049	p.A350V	1.000	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,pfam_CS_dom,superfamily_HSP20-like_chaperone,smart_TPR_repeat,pfscan_CS_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	DYX1C1	HGNC	ENSG00000256061				43	0	0	40	14	25.9259
PRTG	0	genome.wustl.edu	37	15	55965785	55965785	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	55965785	55965785	G	A	SNP	PRTG	ENST00000389286	human	ensembl	74_37	-1	known	missense	c.1636	p.R546W	0.990	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	PRTG	HGNC	ENSG00000166450				134	0	0	101	36	26.2774
RFX7	0	genome.wustl.edu	37	15	56386815	56386815	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	56386815	56386815	G	A	SNP	RFX7	ENST00000423270	human	ensembl	74_37	-1	known	silent	c.3111	p.D1037	0.997	NULL	pfam_DNA-bd_RFX	-	no_errors	RFX7	HGNC	ENSG00000181827				100	0	0	63	32	33.6842
GCOM1	0	genome.wustl.edu	37	15	57913876	57913876	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	57913876	57913876	G	A	SNP	GCOM1	ENST00000380569	human	ensembl	74_37	+1	known	missense	c.389	p.R130Q	0.461	NULL	NULL	-	no_errors	GCOM1	HGNC	ENSG00000137878				119	0	0	90	29	24.3697
GCOM1	0	genome.wustl.edu	37	15	57929897	57929897	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	57929897	57929897	G	A	SNP	GCOM1	ENST00000380569	human	ensembl	74_37	+1	known	missense	c.938	p.R313H	1.000	NULL	NULL	-	no_errors	GCOM1	HGNC	ENSG00000137878				27	0	0	33	5	13.1579
ALDH1A2	0	genome.wustl.edu	37	15	58357819	58357819	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	58357819	58357819	G	A	SNP	ALDH1A2	ENST00000249750	human	ensembl	74_37	-1	known	silent	c.30	p.G10	0.998	NULL	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH1A2	HGNC	ENSG00000128918				12	0	0	4	4	50
RNF111	0	genome.wustl.edu	37	15	59323599	59323599	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	59323599	59323599	C	T	SNP	RNF111	ENST00000434298	human	ensembl	74_37	+1	known	missense	c.578	p.S193L	0.441	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF111	HGNC	ENSG00000157450				143	1	0.694444	99	41	29.2857
LDHAL6B	0	genome.wustl.edu	37	15	59499582	59499582	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	59499582	59499582	G	A	SNP	LDHAL6B	ENST00000307144	human	ensembl	74_37	+1	known	missense	c.443	p.R148H	1.000	pfam_Lactate/malate_DH_N,pirsf_L-lactate/malate_DH,tigrfam_L-lactate_DH	pfam_Lactate/malate_DH_N,pfam_Lactate/malate_DH_C,superfamily_Lactate_DH/Glyco_Ohase_4_C,pirsf_L-lactate/malate_DH,prints_L-lactate/malate_DH,tigrfam_L-lactate_DH	-	no_errors	LDHAL6B	HGNC	ENSG00000171989				184	0	0	128	39	23.3533
TLN2	0	genome.wustl.edu	37	15	63009877	63009877	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	63009877	63009877	C	T	SNP	TLN2	ENST00000306829	human	ensembl	74_37	+1	known	nonsense	c.2866	p.Q956*	1.000	NULL	pfam_Talin_cent,pfam_ILWEQ_dom,pfam_Vinculin-bd_dom,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ_dom,pfscan_FERM_domain,pfscan_ILWEQ_dom	-	no_errors	TLN2	HGNC	ENSG00000171914				18	0	0	9	6	40
TLN2	0	genome.wustl.edu	37	15	63019352	63019352	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	63019352	63019352	C	T	SNP	TLN2	ENST00000306829	human	ensembl	74_37	+1	known	silent	c.3322	p.L1108	1.000	superfamily_Vinculin/catenin	pfam_Talin_cent,pfam_ILWEQ_dom,pfam_Vinculin-bd_dom,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ_dom,pfscan_FERM_domain,pfscan_ILWEQ_dom	-	no_errors	TLN2	HGNC	ENSG00000171914				41	0	0	35	12	25.5319
TLN2	0	genome.wustl.edu	37	15	63092928	63092928	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	63092928	63092928	C	T	SNP	TLN2	ENST00000306829	human	ensembl	74_37	+1	known	missense	c.6437	p.A2146V	1.000	NULL	pfam_Talin_cent,pfam_ILWEQ_dom,pfam_Vinculin-bd_dom,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ_dom,pfscan_FERM_domain,pfscan_ILWEQ_dom	-	no_errors	TLN2	HGNC	ENSG00000171914				24	0	0	12	5	29.4118
HERC1	0	genome.wustl.edu	37	15	63943555	63943555	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	63943555	63943555	C	T	SNP	HERC1	ENST00000443617	human	ensembl	74_37	-1	known	silent	c.10443	p.L3481	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657				115	0	0	79	29	26.8519
PIF1	0	genome.wustl.edu	37	15	65114700	65114700	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	65114700	65114700	C	T	SNP	PIF1	ENST00000333425	human	ensembl	74_37	-1	known	missense	c.668	p.S223N	0.991	superfamily_P-loop_NTPase	pfam_DNA_helicase_Pif1,pfam_DNA_helicase,superfamily_P-loop_NTPase	-	no_errors	PIF1	HGNC	ENSG00000140451				39	0	0	33	7	17.5
VWA9	0	genome.wustl.edu	37	15	65892135	65892135	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	65892135	65892135	T	C	SNP	VWA9	ENST00000567744	human	ensembl	74_37	-1	known	missense	c.571	p.M191V	1.000	NULL	NULL	-	no_errors	VWA9	HGNC	ENSG00000138614				91	0	0	64	31	32.6316
MEGF11	0	genome.wustl.edu	37	15	66416298	66416298	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	66416298	66416298	C	T	SNP	MEGF11	ENST00000409699	human	ensembl	74_37	-1	known	missense	c.139	p.D47N	1.000	pfscan_EMI_domain	pfam_EGF_laminin,pfam_EGF_extracell,smart_EG-like_dom,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_EMI_domain	-	no_errors	MEGF11	HGNC	ENSG00000157890				91	0	0	65	19	22.619
LCTL	0	genome.wustl.edu	37	15	66844070	66844070	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	66844070	66844070	C	T	SNP	LCTL	ENST00000341509	human	ensembl	74_37	-1	known	missense	c.1454	p.R485H	1.000	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	LCTL	HGNC	ENSG00000188501				131	0	0	98	30	23.4375
CLN6	0	genome.wustl.edu	37	15	68500592	68500592	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	68500592	68500592	C	T	SNP	CLN6	ENST00000249806	human	ensembl	74_37	-1	known	silent	c.822	p.A274	0.000	NULL	NULL	-	no_errors	CLN6	HGNC	ENSG00000128973				100	0	0	50	20	28.5714
KIF23	0	genome.wustl.edu	37	15	69728955	69728955	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	69728955	69728955	C	T	SNP	KIF23	ENST00000260363	human	ensembl	74_37	+1	known	silent	c.1449	p.C483	0.407	superfamily_P-loop_NTPase	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF23	HGNC	ENSG00000137807				85	0	0	53	17	24.2857
TLE3	0	genome.wustl.edu	37	15	70346947	70346947	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	70346947	70346947	C	T	SNP	TLE3	ENST00000558939	human	ensembl	74_37	-1	known	silent	c.1665	p.T555	0.963	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Groucho/TLE_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Groucho_enhance	-	no_errors	TLE3	HGNC	ENSG00000140332				20	0	0	18	4	18.1818
THSD4	0	genome.wustl.edu	37	15	71433871	71433871	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	71433871	71433871	T	C	SNP	THSD4	ENST00000261862	human	ensembl	74_37	+1	known	missense	c.5	p.V2A	0.002	NULL	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD4	HGNC	ENSG00000187720				19	0	0	16	6	27.2727
THSD4	0	genome.wustl.edu	37	15	71549040	71549040	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	71549040	71549040	A	G	SNP	THSD4	ENST00000261862	human	ensembl	74_37	+1	known	missense	c.1001	p.E334G	1.000	NULL	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD4	HGNC	ENSG00000187720				128	0	0	89	30	25.2101
MYO9A	0	genome.wustl.edu	37	15	72119009	72119009	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	72119009	72119009	A	G	SNP	MYO9A	ENST00000424560	human	ensembl	74_37	-1	known	missense	c.7772	p.V2591A	0.003	NULL	pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO9A	HGNC	ENSG00000066933				109	0	0	114	6	5
PKM	0	genome.wustl.edu	37	15	72494822	72494822	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	72494822	72494822	G	A	SNP	PKM	ENST00000335181	human	ensembl	74_37	-1	known	missense	c.1280	p.A427V	1.000	pfam_Pyrv_Knase_C,superfamily_Pyrv_Knase_C,tigrfam_Pyr_Knase	pfam_Pyrv_Knase_brl,pfam_Pyrv_Knase_C,superfamily_Pyrv/PenolPyrv_Kinase-like_dom,superfamily_Pyrv_Knase_C,superfamily_Pyrv_Knase-like_insert_dom,prints_Pyr_Knase,tigrfam_Pyr_Knase	-	no_errors	PKM	HGNC	ENSG00000067225				12	0	0	13	4	23.5294
PKM	0	genome.wustl.edu	37	15	72502791	72502791	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	72502791	72502791	C	T	SNP	PKM	ENST00000319622	human	ensembl	74_37	-1	known	missense	c.275	p.R92H	1.000	pfam_Pyrv_Knase_brl,superfamily_Pyrv/PenolPyrv_Kinase-like_dom,tigrfam_Pyr_Knase	pfam_Pyrv_Knase_brl,pfam_Pyrv_Knase_C,superfamily_Pyrv/PenolPyrv_Kinase-like_dom,superfamily_Pyrv_Knase_C,superfamily_Pyrv_Knase-like_insert_dom,prints_Pyr_Knase,tigrfam_Pyr_Knase	-	no_errors	PKM	HGNC	ENSG00000067225				91	0	0	61	13	17.5676
TMEM202	0	genome.wustl.edu	37	15	72691176	72691176	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	72691176	72691176	C	T	SNP	TMEM202	ENST00000341689	human	ensembl	74_37	+1	known	silent	c.264	p.G88	0.002	NULL	NULL	-	no_errors	TMEM202	HGNC	ENSG00000187806				88	0	0	63	21	25
NEO1	0	genome.wustl.edu	37	15	73542042	73542042	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	73542042	73542042	C	T	SNP	NEO1	ENST00000261908	human	ensembl	74_37	+1	known	missense	c.1874	p.A625V	1.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	NEO1	HGNC	ENSG00000067141				126	0	0	106	37	25.8741
PML	0	genome.wustl.edu	37	15	74327751	74327751	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	74327751	74327751	C	T	SNP	PML	ENST00000268059	human	ensembl	74_37	+1	known	missense	c.1949	p.A650V	0.002	NULL	pfam_DUF3583,pfam_Znf_B-box,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	PML	HGNC	ENSG00000140464				55	0	0	30	6	16.6667
ISLR2	0	genome.wustl.edu	37	15	74426148	74426148	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	74426148	74426148	C	T	SNP	ISLR2	ENST00000361742	human	ensembl	74_37	+1	known	silent	c.1053	p.G351	0.021	pfscan_Ig-like_dom	pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Ig-like_dom	-	no_errors	ISLR2	HGNC	ENSG00000167178				16	0	0	8	3	27.2727
CLK3	0	genome.wustl.edu	37	15	74919715	74919715	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	74919715	74919715	C	T	SNP	CLK3	ENST00000395066	human	ensembl	74_37	+1	known	silent	c.1284	p.T428	0.712	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CLK3	HGNC	ENSG00000179335				299	1	0.333333	211	44	17.2549
SCAMP5	0	genome.wustl.edu	37	15	75311250	75311250	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	75311250	75311250	G	A	SNP	SCAMP5	ENST00000562212	human	ensembl	74_37	+1	known	missense	c.658	p.A220T	0.988	NULL	pfam_SCAMP	-	no_errors	SCAMP5	HGNC	ENSG00000198794				53	0	0	29	16	35.5556
C15orf39	0	genome.wustl.edu	37	15	75499456	75499456	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	75499456	75499456	G	A	SNP	C15orf39	ENST00000360639	human	ensembl	74_37	+1	known	missense	c.1067	p.G356D	1.000	NULL	NULL	-	no_errors	C15orf39	HGNC	ENSG00000167173				124	0	0	85	10	10.5263
GOLGA6C	0	genome.wustl.edu	37	15	75558555	75558555	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	75558555	75558555	G	A	SNP	GOLGA6C	ENST00000300576	human	ensembl	74_37	+1	known	silent	c.957	p.Q319	0.998	NULL	NULL	-	no_errors	GOLGA6C	HGNC	ENSG00000167195				8	0	0	2	7	77.7778
SIN3A	0	genome.wustl.edu	37	15	75664419	75664419	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	75664419	75664419	G	A	SNP	SIN3A	ENST00000360439	human	ensembl	74_37	-1	known	silent	c.3723	p.G1241	1.000	NULL	pfam_PAH,pfam_HDAC_interact,superfamily_PAH,smart_HDAC_interact	-	no_errors	SIN3A	HGNC	ENSG00000169375				83	0	0	82	5	5.74713
SIN3A	0	genome.wustl.edu	37	15	75692389	75692389	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	75692389	75692389	G	A	SNP	SIN3A	ENST00000360439	human	ensembl	74_37	-1	known	missense	c.1846	p.R616C	1.000	pfam_HDAC_interact,smart_HDAC_interact	pfam_PAH,pfam_HDAC_interact,superfamily_PAH,smart_HDAC_interact	-	no_errors	SIN3A	HGNC	ENSG00000169375				165	0	0	101	47	31.7568
SNX33	0	genome.wustl.edu	37	15	75949483	75949483	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	75949483	75949483	G	A	SNP	SNX33	ENST00000308527	human	ensembl	74_37	+1	known	missense	c.1652	p.R551H	0.998	pfam_Sorting_nexin_WASP-bd-dom,pirsf_Snx9	pfam_Sorting_nexin_WASP-bd-dom,pfam_Phox,pfam_SH3_domain,pfam_SH3_2,superfamily_Phox,superfamily_SH3_domain,smart_SH3_domain,smart_Phox,pirsf_Snx9,pfscan_Phox,pfscan_SH3_domain	-	no_errors	SNX33	HGNC	ENSG00000173548				76	0	0	51	23	31.0811
CSPG4	0	genome.wustl.edu	37	15	75968093	75968093	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	75968093	75968093	T	C	SNP	CSPG4	ENST00000308508	human	ensembl	74_37	-1	known	missense	c.6767	p.D2256G	0.978	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	-	no_errors	CSPG4	HGNC	ENSG00000173546				34	0	0	33	6	15.3846
CSPG4	0	genome.wustl.edu	37	15	75968836	75968836	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	75968836	75968836	G	A	SNP	CSPG4	ENST00000308508	human	ensembl	74_37	-1	known	silent	c.6024	p.G2008	0.008	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	-	no_errors	CSPG4	HGNC	ENSG00000173546				87	0	0	66	6	8.33333
SCAPER	0	genome.wustl.edu	37	15	76696913	76696913	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	76696913	76696913	G	A	SNP	SCAPER	ENST00000324767	human	ensembl	74_37	-1	known	missense	c.3419	p.A1140V	0.412	NULL	smart_Znf_U1	-	no_errors	SCAPER	HGNC	ENSG00000140386				229	0	0	137	62	31.1558
ACSBG1	0	genome.wustl.edu	37	15	78466056	78466056	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	78466056	78466056	G	A	SNP	ACSBG1	ENST00000258873	human	ensembl	74_37	-1	known	silent	c.1968	p.A656	0.013	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSBG1	HGNC	ENSG00000103740				73	0	0	49	12	19.6721
ACSBG1	0	genome.wustl.edu	37	15	78485913	78485913	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	78485913	78485913	C	T	SNP	ACSBG1	ENST00000258873	human	ensembl	74_37	-1	known	missense	c.598	p.A200T	0.869	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSBG1	HGNC	ENSG00000103740				74	0	0	33	13	28.2609
DNAJA4	0	genome.wustl.edu	37	15	78566648	78566648	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	78566648	78566648	C	T	SNP	DNAJA4	ENST00000394855	human	ensembl	74_37	+1	known	silent	c.615	p.T205	0.168	pfam_HSP_DnaJ_Cys-rich_dom,superfamily_HSP40/DnaJ_pept-bd,superfamily_HSP_DnaJ_Cys-rich_dom,pfscan_HSP_DnaJ_Cys-rich_dom	pfam_DnaJ_domain,pfam_DnaJ_C,pfam_HSP_DnaJ_Cys-rich_dom,superfamily_DnaJ_domain,superfamily_HSP40/DnaJ_pept-bd,superfamily_HSP_DnaJ_Cys-rich_dom,smart_DnaJ_domain,pfscan_DnaJ_domain,pfscan_HSP_DnaJ_Cys-rich_dom,prints_DnaJ_domain	-	no_errors	DNAJA4	HGNC	ENSG00000140403				40	0	0	18	4	18.1818
CRABP1	0	genome.wustl.edu	37	15	78635882	78635882	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	78635882	78635882	G	A	SNP	CRABP1	ENST00000299529	human	ensembl	74_37	+1	known	silent	c.291	p.T97	0.954	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	-	no_errors	CRABP1	HGNC	ENSG00000166426				83	0	0	50	6	10.7143
CTSH	0	genome.wustl.edu	37	15	79229690	79229690	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	79229690	79229690	C	T	SNP	CTSH	ENST00000220166	human	ensembl	74_37	-1	known	missense	c.199	p.A67T	0.863	pfam_Prot_inhib_I29,smart_Prot_inhib_I29	pfam_Peptidase_C1A_C,pfam_Prot_inhib_I29,smart_Prot_inhib_I29,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSH	HGNC	ENSG00000103811				83	0	0	60	11	15.493
RASGRF1	0	genome.wustl.edu	37	15	79382811	79382811	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	79382811	79382811	G	A	SNP	RASGRF1	ENST00000419573	human	ensembl	74_37	-1	known	silent	c.30	p.G10	1.000	NULL	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,superfamily_DH-domain,smart_Pleckstrin_homology,smart_DH-domain,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRF1	HGNC	ENSG00000058335				99	0	0	78	17	17.8947
KIAA1024	0	genome.wustl.edu	37	15	79749839	79749839	+	Silent	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	79749839	79749839	A	G	SNP	KIAA1024	ENST00000305428	human	ensembl	74_37	+1	known	silent	c.1350	p.E450	0.606	NULL	pfam_UPF0258	-	no_errors	KIAA1024	HGNC	ENSG00000169330				68	0	0	51	5	8.92857
ZFAND6	0	genome.wustl.edu	37	15	80423565	80423565	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	80423565	80423565	C	T	SNP	ZFAND6	ENST00000261749	human	ensembl	74_37	+1	known	silent	c.408	p.S136	0.987	NULL	pfam_Znf_A20,pfam_Znf_AN1,smart_Znf_A20,smart_Znf_AN1,pfscan_Znf_A20,pfscan_Znf_AN1	-	no_errors	ZFAND6	HGNC	ENSG00000086666				174	0	0	128	46	26.4368
KIAA1199	0	genome.wustl.edu	37	15	81172107	81172107	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	81172107	81172107	C	T	SNP	KIAA1199	ENST00000220244	human	ensembl	74_37	+1	known	missense	c.292	p.H98Y	0.994	pfam_G8_domain	pfam_G8_domain,superfamily_Pectin_lyase_fold/virulence	-	no_errors	KIAA1199	HGNC	ENSG00000103888				68	0	0	51	22	30.137
KIAA1199	0	genome.wustl.edu	37	15	81173308	81173308	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	81173308	81173308	G	A	SNP	KIAA1199	ENST00000220244	human	ensembl	74_37	+1	known	missense	c.448	p.A150T	0.865	pfam_G8_domain	pfam_G8_domain,superfamily_Pectin_lyase_fold/virulence	-	no_errors	KIAA1199	HGNC	ENSG00000103888				128	0	0	72	29	28.7129
KIAA1199	0	genome.wustl.edu	37	15	81213380	81213380	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	81213380	81213380	T	C	SNP	KIAA1199	ENST00000220244	human	ensembl	74_37	+1	known	missense	c.2011	p.S671P	1.000	superfamily_Pectin_lyase_fold/virulence	pfam_G8_domain,superfamily_Pectin_lyase_fold/virulence	-	no_errors	KIAA1199	HGNC	ENSG00000103888				50	0	0	52	3	5.45455
EFTUD1	0	genome.wustl.edu	37	15	82520574	82520574	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	82520574	82520574	C	T	SNP	EFTUD1	ENST00000268206	human	ensembl	74_37	-1	known	missense	c.1027	p.A343T	1.000	superfamily_P-loop_NTPase	pfam_EF_GTP-bd_dom,pfam_EFG_V,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_EFG_III-V,superfamily_Transl_B-barrel,smart_EFG_V,prints_EF_GTP-bd_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	EFTUD1	HGNC	ENSG00000140598				75	0	0	72	5	6.49351
FSD2	0	genome.wustl.edu	37	15	83455633	83455633	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	83455633	83455633	C	A	SNP	FSD2	ENST00000334574	human	ensembl	74_37	-1	known	missense	c.510	p.E170D	0.974	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,prints_Butyrophylin	-	no_errors	FSD2	HGNC	ENSG00000186628				114	0	0	100	6	5.66038
BTBD1	0	genome.wustl.edu	37	15	83698894	83698894	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	83698894	83698894	C	G	SNP	BTBD1	ENST00000261721	human	ensembl	74_37	-1	known	missense	c.1049	p.R350P	1.000	pfam_PHR	pfam_PHR,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD1	HGNC	ENSG00000064726				517	0	0	290	147	33.6384
ALPK3	0	genome.wustl.edu	37	15	85400381	85400381	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	85400381	85400381	G	A	SNP	ALPK3	ENST00000258888	human	ensembl	74_37	+1	known	silent	c.3018	p.P1006	0.000	NULL	pfam_MHCK_EF2_kinase,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase,pfscan_Ig-like_dom	-	no_errors	ALPK3	HGNC	ENSG00000136383				47	0	0	31	15	32.6087
SLC28A1	0	genome.wustl.edu	37	15	85478614	85478614	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	85478614	85478614	C	T	SNP	SLC28A1	ENST00000286749	human	ensembl	74_37	+1	known	silent	c.1446	p.C482	0.993	pfam_Nucleos_tra2_C,tigrfam_C_nuclsd_transpt_met_bac	pfam_Nucleos_tra2_C,pfam_Nuclsd_transpt2,pfam_Nucleoside_recog_Gate,tigrfam_C_nuclsd_transpt_met_bac	-	no_errors	SLC28A1	HGNC	ENSG00000156222				55	0	0	30	9	23.0769
AGBL1	0	genome.wustl.edu	37	15	87099509	87099509	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	87099509	87099509	G	A	SNP	AGBL1	ENST00000441037	human	ensembl	74_37	+1	known	missense	c.2912	p.G971D	0.063	NULL	pfam_Peptidase_M14,superfamily_ARM-type_fold	-	no_errors	AGBL1	HGNC	ENSG00000166748				44	0	0	22	4	15.3846
MRPL46	0	genome.wustl.edu	37	15	89002999	89002999	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	89002999	89002999	C	T	SNP	MRPL46	ENST00000312475	human	ensembl	74_37	-1	known	missense	c.685	p.A229T	1.000	superfamily_NUDIX_hydrolase_dom-like	pfam_Ribosomal_L46,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	MRPL46	HGNC	ENSG00000259494				68	0	0	45	7	13.4615
AEN	0	genome.wustl.edu	37	15	89172498	89172498	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	89172498	89172498	G	A	SNP	AEN	ENST00000379231	human	ensembl	74_37	+1	known	silent	c.582	p.A194	0.239	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	-	no_errors	AEN	HGNC	ENSG00000181026				83	0	0	46	11	19.2982
ACAN	0	genome.wustl.edu	37	15	89382100	89382100	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	89382100	89382100	C	T	SNP	ACAN	ENST00000439576	human	ensembl	74_37	+1	known	missense	c.277	p.R93C	0.722	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_Sushi_SCR_CCP,pfam_EG-like_dom,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,smart_EG-like_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link	-	no_errors	ACAN	HGNC	ENSG00000157766				80	0	0	49	19	27.9412
RHCG	0	genome.wustl.edu	37	15	90039664	90039664	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	90039664	90039664	C	T	SNP	RHCG	ENST00000268122	human	ensembl	74_37	-1	known	missense	c.112	p.A38T	0.012	NULL	pfam_NH4_transpt_AmtB-like_dom,superfamily_NH4_transpt_AmtB-like_dom,prints_RhesusRHD	-	no_errors	RHCG	HGNC	ENSG00000140519				125	0	0	108	20	15.625
FES	0	genome.wustl.edu	37	15	91436365	91436365	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	91436365	91436365	G	A	SNP	FES	ENST00000328850	human	ensembl	74_37	+1	known	missense	c.1862	p.R621H	1.000	pirsf_Tyr_kinase_non-rcpt_Fes_subgr,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_non-rcpt_Fes_subgr,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_FCH_dom,superfamily_Kinase-like_dom,superfamily_t-SNARE,smart_FCH_dom,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,pfscan_FCH_dom,pfscan_SH2,pfscan_Prot_kinase_dom	-	no_errors	FES	HGNC	ENSG00000182511				35	0	0	20	5	20
MAN2A2	0	genome.wustl.edu	37	15	91461902	91461902	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	91461902	91461902	G	A	SNP	MAN2A2	ENST00000360468	human	ensembl	74_37	+1	known	missense	c.3217	p.A1073T	1.000	pfam_Glyco_hydro_38_C,superfamily_Gal_mutarotase_SF_dom	pfam_Glyco_hydro_38_N,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Gal_mutarotase_SF_dom,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2A2	HGNC	ENSG00000196547				32	0	0	26	5	16.129
UNC45A	0	genome.wustl.edu	37	15	91483621	91483621	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	91483621	91483621	G	A	SNP	UNC45A	ENST00000418476	human	ensembl	74_37	+1	known	missense	c.605	p.R202H	1.000	superfamily_ARM-type_fold	pfam_UNC-45/Ring3,superfamily_ARM-type_fold,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	UNC45A	HGNC	ENSG00000140553				77	0	0	56	20	26.3158
PRC1	0	genome.wustl.edu	37	15	91517404	91517404	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	91517404	91517404	G	A	SNP	PRC1	ENST00000394249	human	ensembl	74_37	-1	known	nonsense	c.1423	p.R475*	1.000	pfam_MAP65_Ase1_PRC1	pfam_MAP65_Ase1_PRC1	-	no_errors	PRC1	HGNC	ENSG00000198901				62	0	0	49	17	25.7576
VPS33B	0	genome.wustl.edu	37	15	91549003	91549003	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	91549003	91549003	G	A	SNP	VPS33B	ENST00000333371	human	ensembl	74_37	-1	known	silent	c.951	p.G317	0.999	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	VPS33B	HGNC	ENSG00000184056				94	0	0	57	6	9.52381
SV2B	0	genome.wustl.edu	37	15	91769547	91769547	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	91769547	91769547	C	T	SNP	SV2B	ENST00000330276	human	ensembl	74_37	+1	known	silent	c.54	p.G18	1.000	tigrfam_SV2	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2	-	no_errors	SV2B	HGNC	ENSG00000185518				103	0	0	63	5	7.35294
SLCO3A1	0	genome.wustl.edu	37	15	92669301	92669301	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	92669301	92669301	G	A	SNP	SLCO3A1	ENST00000318445	human	ensembl	74_37	+1	known	silent	c.1185	p.A395	0.003	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO3A1	HGNC	ENSG00000176463				51	0	0	34	12	26.087
CHD2	0	genome.wustl.edu	37	15	93527700	93527700	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	93527700	93527700	G	A	SNP	CHD2	ENST00000557381	human	ensembl	74_37	+1	putative	missense	c.3207	p.M1069I	1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Homeodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD2	HGNC	ENSG00000173575				42	0	0	25	11	30.5556
NR2F2	0	genome.wustl.edu	37	15	96875556	96875556	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	96875556	96875556	G	A	SNP	NR2F2	ENST00000394166	human	ensembl	74_37	+1	known	silent	c.222	p.Q74	1.000	NULL	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_COUP_TF,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Retinoid-X_rcpt/HNF4	-	no_errors	NR2F2	HGNC	ENSG00000185551				11	0	0	12	4	25
IGF1R	0	genome.wustl.edu	37	15	99486223	99486223	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	99486223	99486223	C	T	SNP	IGF1R	ENST00000268035	human	ensembl	74_37	+1	known	missense	c.3529	p.R1177C	1.000	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_Fibronectin_type3,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom	-	no_errors	IGF1R	HGNC	ENSG00000140443				141	0	0	106	9	7.82609
IGF1R	0	genome.wustl.edu	37	15	99500550	99500550	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	99500550	99500550	G	A	SNP	IGF1R	ENST00000268035	human	ensembl	74_37	+1	known	missense	c.3983	p.G1328D	0.998	pirsf_Tyr_kinase_insulin-like_rcpt	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_Fibronectin_type3,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom	-	no_errors	IGF1R	HGNC	ENSG00000140443				28	0	0	8	6	42.8571
SYNM	0	genome.wustl.edu	37	15	99653893	99653893	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	99653893	99653893	G	A	SNP	SYNM	ENST00000336292	human	ensembl	74_37	+1	known	missense	c.905	p.G302D	0.992	pfam_IF	pfam_IF	-	no_errors	SYNM	HGNC	ENSG00000182253				24	0	0	19	7	26.9231
SYNM	0	genome.wustl.edu	37	15	99671250	99671250	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	99671250	99671250	G	A	SNP	SYNM	ENST00000336292	human	ensembl	74_37	+1	known	silent	c.2682	p.A894	0.000	NULL	pfam_IF	-	no_errors	SYNM	HGNC	ENSG00000182253				20	0	0	14	6	30
ATF7IP2	0	genome.wustl.edu	37	16	10524906	10524906	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	10524906	10524906	C	T	SNP	ATF7IP2	ENST00000356427	human	ensembl	74_37	+1	known	silent	c.429	p.N143	0.000	NULL	superfamily_Fibronectin_type3	-	no_errors	ATF7IP2	HGNC	ENSG00000166669				133	0	0	88	28	24.1379
CIITA	0	genome.wustl.edu	37	16	11001033	11001033	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	11001033	11001033	G	A	SNP	CIITA	ENST00000324288	human	ensembl	74_37	+1	known	missense	c.1684	p.A562T	0.014	superfamily_P-loop_NTPase,pfscan_NACHT_NTPase,prints_MHC_II_transact	superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,prints_MHC_II_transact	-	no_errors	CIITA	HGNC	ENSG00000179583				30	0	0	17	5	22.7273
TXNDC11	0	genome.wustl.edu	37	16	11815525	11815525	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	11815525	11815525	G	T	SNP	TXNDC11	ENST00000356957	human	ensembl	74_37	-1	known	missense	c.701	p.P234H	1.000	NULL	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TXNDC11	HGNC	ENSG00000153066				33	0	0	25	9	26.4706
SNX29	0	genome.wustl.edu	37	16	12220513	12220513	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	12220513	12220513	G	T	SNP	SNX29	ENST00000306030	human	ensembl	74_37	+1	known	missense	c.271	p.A91S	1.000	NULL	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX29	HGNC	ENSG00000048471				48	0	0	44	4	8.33333
SNX29	0	genome.wustl.edu	37	16	12618607	12618607	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	12618607	12618607	C	T	SNP	SNX29	ENST00000306030	human	ensembl	74_37	+1	known	missense	c.1072	p.R358C	1.000	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX29	HGNC	ENSG00000048471				50	0	0	40	10	20
ENSG00000262116	0	genome.wustl.edu	37	16	13297142	13297142	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	13297142	13297142	G	A	SNP	ENSG00000262116	ENST00000571939	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	AC009134.1	Clone_based_vega_gene	ENSG00000262116				11	0	0	6	4	40
BAIAP3	0	genome.wustl.edu	37	16	1394700	1394700	+	Splice_Site	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	1394700	1394700	G	A	SNP	BAIAP3	ENST00000324385	human	ensembl	74_37	+1	known	splice_site	c.1862+1	e19+1	1.000	-	-	-	no_errors	BAIAP3	HGNC	ENSG00000007516				105	0	0	56	16	22.2222
PARN	0	genome.wustl.edu	37	16	14576504	14576504	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	14576504	14576504	C	T	SNP	PARN	ENST00000437198	human	ensembl	74_37	-1	known	missense	c.1661	p.R554H	0.000	NULL	pfam_RNase_CAF1,pfam_PolyA-riboNase_RNA_binding,pfam_R3H_ss-bd,superfamily_RNaseH-like_dom,pfscan_R3H_ss-bd	-	no_errors	PARN	HGNC	ENSG00000140694				116	0	0	70	25	26.3158
PARN	0	genome.wustl.edu	37	16	14687198	14687198	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	14687198	14687198	A	G	SNP	PARN	ENST00000437198	human	ensembl	74_37	-1	known	missense	c.878	p.V293A	1.000	pfam_RNase_CAF1,superfamily_RNaseH-like_dom	pfam_RNase_CAF1,pfam_PolyA-riboNase_RNA_binding,pfam_R3H_ss-bd,superfamily_RNaseH-like_dom,pfscan_R3H_ss-bd	-	no_errors	PARN	HGNC	ENSG00000140694				97	0	0	75	4	5.06329
CLCN7	0	genome.wustl.edu	37	16	1510842	1510842	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	1510842	1510842	G	A	SNP	CLCN7	ENST00000382745	human	ensembl	74_37	-1	known	silent	c.459	p.G153	0.999	superfamily_Cl-channel_core,prints_Cl_channel-7	pfam_Cl-channel_volt-gated,pfam_CBS_dom,superfamily_Cl-channel_core,smart_CBS_dom,prints_Cl-channel_volt-gated,prints_Cl_channel-7	-	no_errors	CLCN7	HGNC	ENSG00000103249				33	0	0	35	4	10.2564
KIAA0430	0	genome.wustl.edu	37	16	15714321	15714321	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	15714321	15714321	T	C	SNP	KIAA0430	ENST00000396368	human	ensembl	74_37	-1	known	missense	c.2707	p.I903V	1.000	NULL	pfam_Limkain_b1_cons_dom,pfam_NYN_limkain-b1,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	KIAA0430	HGNC	ENSG00000166783				51	0	0	46	18	28.125
ABCC1	0	genome.wustl.edu	37	16	16208889	16208889	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	16208889	16208889	G	A	SNP	ABCC1	ENST00000399408	human	ensembl	74_37	+1	known	missense	c.3376	p.A1126T	0.987	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC1	HGNC	ENSG00000103222				44	0	0	30	9	23.0769
XYLT1	0	genome.wustl.edu	37	16	17294440	17294440	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	17294440	17294440	C	T	SNP	XYLT1	ENST00000261381	human	ensembl	74_37	-1	known	missense	c.985	p.A329T	1.000	pfam_Glyco_trans_14	pfam_XylT,pfam_Glyco_trans_14	-	no_errors	XYLT1	HGNC	ENSG00000103489				160	0	0	137	9	6.16438
EME2	0	genome.wustl.edu	37	16	1825067	1825067	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	1825067	1825067	C	T	SNP	EME2	ENST00000307394	human	ensembl	74_37	+1	known	missense	c.503	p.P168L	0.771	pfam_ERCC4_domain,smart_ERCC4_domain	pfam_ERCC4_domain,smart_ERCC4_domain	-	no_errors	EME2	HGNC	ENSG00000197774				104	0	0	84	7	7.69231
TMC7	0	genome.wustl.edu	37	16	19070909	19070909	+	Silent	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	19070909	19070909	A	G	SNP	TMC7	ENST00000569532	human	ensembl	74_37	+1	putative	silent	c.2199	p.L733	0.000	NULL	pfam_TMC	-	no_errors	TMC7	HGNC	ENSG00000170537				33	0	0	25	8	24.2424
TMC5	0	genome.wustl.edu	37	16	19483429	19483429	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	19483429	19483429	G	A	SNP	TMC5	ENST00000396229	human	ensembl	74_37	+1	known	missense	c.1802	p.R601H	0.069	NULL	pfam_TMC	-	no_errors	TMC5	HGNC	ENSG00000103534				127	0	0	92	44	32.3529
GPRC5B	0	genome.wustl.edu	37	16	19884011	19884011	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	19884011	19884011	C	T	SNP	GPRC5B	ENST00000537135	human	ensembl	74_37	-1	known	missense	c.235	p.A79T	1.000	NULL	pfam_GPCR_3_C,pfscan_GPCR_3_C	-	no_errors	GPRC5B	HGNC	ENSG00000167191				32	0	0	22	7	24.1379
TBL3	0	genome.wustl.edu	37	16	2024181	2024181	+	Splice_Site	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	2024181	2024181	G	A	SNP	TBL3	ENST00000561907	human	ensembl	74_37	+1	known	splice_site	c.94-1	e3-1	0.003	-	-	-	no_errors	TBL3	HGNC	ENSG00000183751				29	0	0	25	4	13.7931
UMOD	0	genome.wustl.edu	37	16	20362068	20362068	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	20362068	20362068	C	T	SNP	UMOD	ENST00000396138	human	ensembl	74_37	-1	putative	missense	c.139	p.A47T	0.000	NULL	pfam_ZP_dom,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_ZP_dom,pfscan_EG-like_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	UMOD	HGNC	ENSG00000169344				54	0	0	33	10	23.2558
PDILT	0	genome.wustl.edu	37	16	20410510	20410510	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	20410510	20410510	T	C	SNP	PDILT	ENST00000302451	human	ensembl	74_37	-1	known	missense	c.113	p.H38R	0.986	NULL	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	PDILT	HGNC	ENSG00000169340				123	0	0	115	10	8
ZNF598	0	genome.wustl.edu	37	16	2048277	2048277	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	2048277	2048277	C	T	SNP	ZNF598	ENST00000431526	human	ensembl	74_37	-1	known	missense	c.2671	p.D891N	1.000	NULL	superfamily_PAH,smart_Znf_C2H2-like,pfscan_Znf_RING	-	no_errors	ZNF598	HGNC	ENSG00000167962				62	0	0	31	28	47.4576
DNAH3	0	genome.wustl.edu	37	16	21033308	21033308	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	21033308	21033308	A	G	SNP	DNAH3	ENST00000261383	human	ensembl	74_37	-1	known	missense	c.5761	p.Y1921H	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486				44	0	0	41	15	26.7857
DNAH3	0	genome.wustl.edu	37	16	21038392	21038392	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	21038392	21038392	C	T	SNP	DNAH3	ENST00000261383	human	ensembl	74_37	-1	known	missense	c.5497	p.E1833K	1.000	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486				45	0	0	30	4	11.7647
TSC2	0	genome.wustl.edu	37	16	2126084	2126084	+	Silent	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	2126084	2126084	C	A	SNP	TSC2	ENST00000219476	human	ensembl	74_37	+1	known	silent	c.2655	p.I885	0.936	pfam_Tuberin-type_domain,prints_Tuberin	pfam_Tuberin-type_domain,pfam_Tuberin_N,pfam_Rap_GAP_dom,superfamily_ARM-type_fold,pfscan_Rap_GAP_dom,prints_Tuberin	-	no_errors	TSC2	HGNC	ENSG00000103197				57	0	0	23	17	42.5
PKD1	0	genome.wustl.edu	37	16	2152614	2152614	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	2152614	2152614	C	T	SNP	PKD1	ENST00000262304	human	ensembl	74_37	-1	known	missense	c.8969	p.S2990N	0.026	NULL	pfam_PKD_dom,pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_PLAT/LH2_dom,pfam_C-type_lectin,pfam_WSC_carb-bd,pfam_GPS_dom,superfamily_C-type_lectin_fold,superfamily_Lipase_LipOase,superfamily_PKD_dom,superfamily_Fe_hydrogenase,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_WSC_carb-bd_subgr,smart_PKD/Chitinase_dom,smart_C-type_lectin,smart_GPS_dom,smart_PLAT/LH2_dom,prints_PKD_1,pfscan_GPS_dom,pfscan_C-type_lectin,pfscan_PKD_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like,pfscan_WSC_carb-bd,tigrfam_Polycystin_cat	-	no_errors	PKD1	HGNC	ENSG00000008710				22	0	0	14	9	39.1304
PKD1	0	genome.wustl.edu	37	16	2162937	2162937	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	2162937	2162937	C	T	SNP	PKD1	ENST00000262304	human	ensembl	74_37	-1	known	missense	c.3013	p.V1005I	0.930	pfam_PKD_dom,superfamily_PKD_dom,smart_PKD/Chitinase_dom,pfscan_PKD_dom,tigrfam_Polycystin_cat	pfam_PKD_dom,pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_PLAT/LH2_dom,pfam_C-type_lectin,pfam_WSC_carb-bd,pfam_GPS_dom,superfamily_C-type_lectin_fold,superfamily_Lipase_LipOase,superfamily_PKD_dom,superfamily_Fe_hydrogenase,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_WSC_carb-bd_subgr,smart_PKD/Chitinase_dom,smart_C-type_lectin,smart_GPS_dom,smart_PLAT/LH2_dom,prints_PKD_1,pfscan_GPS_dom,pfscan_C-type_lectin,pfscan_PKD_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like,pfscan_WSC_carb-bd,tigrfam_Polycystin_cat	-	no_errors	PKD1	HGNC	ENSG00000008710				44	0	0	20	12	37.5
EEF2K	0	genome.wustl.edu	37	16	22260086	22260086	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	22260086	22260086	G	A	SNP	EEF2K	ENST00000263026	human	ensembl	74_37	+1	known	missense	c.358	p.V120I	0.999	superfamily_Kinase-like_dom,pirsf_Elongation_factor_2_kinase,pfscan_MHCK_EF2_kinase	pfam_MHCK_EF2_kinase,pfam_Sel1-like,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pirsf_Elongation_factor_2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	EEF2K	HGNC	ENSG00000103319				76	0	0	41	6	12.766
MLST8	0	genome.wustl.edu	37	16	2258304	2258304	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	2258304	2258304	G	A	SNP	MLST8	ENST00000397124	human	ensembl	74_37	+1	known	missense	c.667	p.A223T	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	MLST8	HGNC	ENSG00000167965				112	0	0	74	20	21.2766
E4F1	0	genome.wustl.edu	37	16	2284179	2284179	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	2284179	2284179	G	A	SNP	E4F1	ENST00000301727	human	ensembl	74_37	+1	known	silent	c.1383	p.R461	0.932	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	E4F1	HGNC	ENSG00000167967				18	0	0	9	8	47.0588
USP31	0	genome.wustl.edu	37	16	23079707	23079707	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	23079707	23079707	C	T	SNP	USP31	ENST00000219689	human	ensembl	74_37	-1	known	missense	c.3719	p.R1240H	1.000	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP31	HGNC	ENSG00000103404				211	0	0	140	43	23.4973
SCNN1G	0	genome.wustl.edu	37	16	23197805	23197805	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	23197805	23197805	C	T	SNP	SCNN1G	ENST00000300061	human	ensembl	74_37	+1	known	silent	c.213	p.C71	0.761	pfam_Na+channel_ASC,tigrfam_EnaC	pfam_Na+channel_ASC,prints_Na+channel_ASC,tigrfam_EnaC	-	no_errors	SCNN1G	HGNC	ENSG00000166828				43	0	0	46	5	9.80392
SCNN1B	0	genome.wustl.edu	37	16	23364329	23364329	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	23364329	23364329	C	T	SNP	SCNN1B	ENST00000307331	human	ensembl	74_37	+1	known	silent	c.654	p.G218	0.053	pfam_Na+channel_ASC,tigrfam_EnaC	pfam_Na+channel_ASC,prints_Na+channel_ASC,tigrfam_EnaC	-	no_errors	SCNN1B	HGNC	ENSG00000168447				155	0	0	108	29	21.1679
COG7	0	genome.wustl.edu	37	16	23421653	23421653	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	23421653	23421653	G	A	SNP	COG7	ENST00000307149	human	ensembl	74_37	-1	known	missense	c.1438	p.R480W	0.992	pfam_COG7	pfam_COG7	-	no_errors	COG7	HGNC	ENSG00000168434				41	0	0	38	4	9.52381
DCTN5	0	genome.wustl.edu	37	16	23652875	23652875	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	23652875	23652875	C	T	SNP	DCTN5	ENST00000300087	human	ensembl	74_37	+1	known	silent	c.12	p.G4	1.000	superfamily_Trimer_LpxA-like	superfamily_Trimer_LpxA-like	-	no_errors	DCTN5	HGNC	ENSG00000166847				24	0	0	15	6	28.5714
PRKCB	0	genome.wustl.edu	37	16	23847557	23847557	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	23847557	23847557	G	A	SNP	PRKCB	ENST00000303531	human	ensembl	74_37	+1	known	missense	c.61	p.A21T	1.000	pirsf_Protein_kinase_C_a/b/g	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_C2_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd,prints_C2_dom	-	no_errors	PRKCB	HGNC	ENSG00000166501				50	0	0	14	14	50
RBBP6	0	genome.wustl.edu	37	16	24567768	24567768	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	24567768	24567768	C	T	SNP	RBBP6	ENST00000319715	human	ensembl	74_37	+1	known	missense	c.674	p.A225V	1.000	NULL	pfam_DWNN_domain,pfam_Ubox_domain,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,smart_Znf_RING,pfscan_Znf_RING,pfscan_Znf_CCHC	-	no_errors	RBBP6	HGNC	ENSG00000122257				85	0	0	63	6	8.69565
RBBP6	0	genome.wustl.edu	37	16	24583525	24583525	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	24583525	24583525	G	A	SNP	RBBP6	ENST00000319715	human	ensembl	74_37	+1	known	missense	c.5138	p.S1713N	1.000	NULL	pfam_DWNN_domain,pfam_Ubox_domain,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,smart_Znf_RING,pfscan_Znf_RING,pfscan_Znf_CCHC	-	no_errors	RBBP6	HGNC	ENSG00000122257				68	0	0	38	19	33.3333
TNRC6A	0	genome.wustl.edu	37	16	24818069	24818069	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	24818069	24818069	C	T	SNP	TNRC6A	ENST00000395799	human	ensembl	74_37	+1	known	missense	c.4504	p.P1502S	1.000	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6A	HGNC	ENSG00000090905				91	0	0	77	29	27.3585
ARHGAP17	0	genome.wustl.edu	37	16	24942549	24942549	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	24942549	24942549	C	T	SNP	ARHGAP17	ENST00000289968	human	ensembl	74_37	-1	known	missense	c.2071	p.A691T	0.002	NULL	pfam_BAR_dom,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_BAR_dom,smart_RhoGAP_dom,pfscan_BAR_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP17	HGNC	ENSG00000140750				56	0	0	39	5	11.3636
IL4R	0	genome.wustl.edu	37	16	27370284	27370284	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	27370284	27370284	G	A	SNP	IL4R	ENST00000170630	human	ensembl	74_37	+1	known	missense	c.818	p.R273H	0.020	NULL	pfam_IL-4_rcpt-alpha_N,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL4R	HGNC	ENSG00000077238				56	0	0	34	10	22.7273
KIAA0556	0	genome.wustl.edu	37	16	27709701	27709701	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	27709701	27709701	C	T	SNP	KIAA0556	ENST00000261588	human	ensembl	74_37	+1	known	silent	c.993	p.C331	0.000	NULL	superfamily_Thaumatin	-	no_errors	KIAA0556	HGNC	ENSG00000047578				112	0	0	82	25	23.3645
SRRM2	0	genome.wustl.edu	37	16	2816576	2816576	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	2816576	2816576	G	A	SNP	SRRM2	ENST00000301740	human	ensembl	74_37	+1	known	missense	c.6047	p.R2016H	1.000	NULL	pfam_mRNA_splic_Cwf21	-	no_errors	SRRM2	HGNC	ENSG00000167978				77	0	0	47	25	34.7222
FLYWCH1	0	genome.wustl.edu	37	16	2988353	2988353	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	2988353	2988353	G	A	SNP	FLYWCH1	ENST00000399667	human	ensembl	74_37	+1	known	missense	c.2093	p.R698H	0.190	pfam_Znf_FLYWCH	pfam_Znf_FLYWCH	-	no_errors	FLYWCH1	HGNC	ENSG00000059122				12	0	0	5	5	50
TBX6	0	genome.wustl.edu	37	16	30100018	30100018	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	30100018	30100018	G	T	SNP	TBX6	ENST00000279386	human	ensembl	74_37	-1	known	missense	c.764	p.P255Q	1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box,prints_TF_Brachyury	-	no_errors	TBX6	HGNC	ENSG00000149922				135	0	0	97	6	5.82524
ZNF764	0	genome.wustl.edu	37	16	30569345	30569345	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	30569345	30569345	G	A	SNP	ZNF764	ENST00000252797	human	ensembl	74_37	-1	known	silent	c.159	p.D53	1.000	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF764	HGNC	ENSG00000169951				19	0	0	8	6	42.8571
SRCAP	0	genome.wustl.edu	37	16	30732759	30732759	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	30732759	30732759	G	A	SNP	SRCAP	ENST00000262518	human	ensembl	74_37	+1	known	missense	c.3503	p.R1168H	1.000	NULL	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603				81	0	0	60	4	6.25
RNF40	0	genome.wustl.edu	37	16	30780692	30780692	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	30780692	30780692	C	T	SNP	RNF40	ENST00000324685	human	ensembl	74_37	+1	known	silent	c.2433	p.G811	0.979	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF40	HGNC	ENSG00000103549				71	0	0	54	6	10
ZNF629	0	genome.wustl.edu	37	16	30794300	30794300	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	30794300	30794300	C	T	SNP	ZNF629	ENST00000262525	human	ensembl	74_37	-1	known	missense	c.1349	p.R450H	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF629	HGNC	ENSG00000102870				113	0	0	93	8	7.92079
ZNF629	0	genome.wustl.edu	37	16	30794364	30794364	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	30794364	30794364	G	A	SNP	ZNF629	ENST00000262525	human	ensembl	74_37	-1	known	missense	c.1285	p.P429S	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF629	HGNC	ENSG00000102870				63	0	0	43	8	15.6863
SETD1A	0	genome.wustl.edu	37	16	30976445	30976445	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	30976445	30976445	G	A	SNP	SETD1A	ENST00000262519	human	ensembl	74_37	+1	known	missense	c.1382	p.R461H	0.995	NULL	pfam_COMPASS_Set1_N-SET,pfam_SET_dom,pfam_RRM_dom,smart_RRM_dom,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_RRM_dom	-	no_errors	SETD1A	HGNC	ENSG00000099381				30	0	0	15	4	21.0526
ZNF668	0	genome.wustl.edu	37	16	31075337	31075337	+	Silent	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	31075337	31075337	G	T	SNP	ZNF668	ENST00000426488	human	ensembl	74_37	-1	known	silent	c.513	p.A171	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF668	HGNC	ENSG00000167394				9	0	0	4	6	60
ZNF205	0	genome.wustl.edu	37	16	3169748	3169748	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	3169748	3169748	C	T	SNP	ZNF205	ENST00000219091	human	ensembl	74_37	+1	known	missense	c.1087	p.P363S	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF205	HGNC	ENSG00000122386				74	0	0	79	5	5.95238
BMS1P8	0	genome.wustl.edu	37	16	33497986	33497986	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	33497986	33497986	C	T	SNP	BMS1P8	ENST00000565156	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	BMS1P8	HGNC	ENSG00000260518				56	0	0	41	12	22.6415
ZNF75A	0	genome.wustl.edu	37	16	3367335	3367335	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	3367335	3367335	G	A	SNP	ZNF75A	ENST00000574298	human	ensembl	74_37	+1	known	missense	c.357	p.M119I	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF75A	HGNC	ENSG00000162086				77	0	0	68	27	28.4211
AXIN1	0	genome.wustl.edu	37	16	339492	339492	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	339492	339492	C	T	SNP	AXIN1	ENST00000262320	human	ensembl	74_37	-1	known	missense	c.2410	p.A804T	0.058	pfam_DIX,smart_DIX,pfscan_DIX	pfam_DIX,pfam_RGS_dom,pfam_Axin_b-cat-bd,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_DIX,pfscan_DIX,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	AXIN1	HGNC	ENSG00000103126				38	0	0	18	9	33.3333
OR2C1	0	genome.wustl.edu	37	16	3406131	3406131	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	3406131	3406131	G	T	SNP	OR2C1	ENST00000304936	human	ensembl	74_37	+1	known	missense	c.191	p.S64I	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2C1	HGNC	ENSG00000168158				125	0	0	107	10	8.54701
SLX4	0	genome.wustl.edu	37	16	3640237	3640237	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	3640237	3640237	C	T	SNP	SLX4	ENST00000294008	human	ensembl	74_37	-1	known	silent	c.3402	p.S1134	0.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	SLX4	HGNC	ENSG00000188827				75	0	0	71	5	6.57895
CREBBP	0	genome.wustl.edu	37	16	3781373	3781373	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	3781373	3781373	G	A	SNP	CREBBP	ENST00000262367	human	ensembl	74_37	-1	known	silent	c.4992	p.R1664	0.000	NULL	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CREBBP	HGNC	ENSG00000005339				11	0	0	8	4	33.3333
DNAJA3	0	genome.wustl.edu	37	16	4491417	4491417	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	4491417	4491417	C	T	SNP	DNAJA3	ENST00000262375	human	ensembl	74_37	+1	known	silent	c.471	p.Y157	0.688	superfamily_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	pfam_DnaJ_domain,pfam_DnaJ_C,pfam_HSP_DnaJ_Cys-rich_dom,superfamily_DnaJ_domain,superfamily_HSP40/DnaJ_pept-bd,superfamily_HSP_DnaJ_Cys-rich_dom,smart_DnaJ_domain,pfscan_DnaJ_domain,pfscan_HSP_DnaJ_Cys-rich_dom,prints_DnaJ_domain	-	no_errors	DNAJA3	HGNC	ENSG00000103423				64	0	0	29	15	34.0909
VPS35	0	genome.wustl.edu	37	16	46712899	46712899	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	46712899	46712899	G	A	SNP	VPS35	ENST00000299138	human	ensembl	74_37	-1	known	missense	c.676	p.R226C	1.000	pfam_VPS35,superfamily_ARM-type_fold	pfam_VPS35,superfamily_ARM-type_fold	-	no_errors	VPS35	HGNC	ENSG00000069329				167	0	0	126	46	26.7442
ITFG1	0	genome.wustl.edu	37	16	47294547	47294547	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	47294547	47294547	G	A	SNP	ITFG1	ENST00000320640	human	ensembl	74_37	-1	known	missense	c.1130	p.A377V	0.441	NULL	NULL	-	no_errors	ITFG1	HGNC	ENSG00000129636				98	0	0	63	15	19.2308
ABCC12	0	genome.wustl.edu	37	16	48134814	48134814	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	48134814	48134814	C	T	SNP	ABCC12	ENST00000311303	human	ensembl	74_37	-1	known	missense	c.3007	p.A1003T	0.996	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC12	HGNC	ENSG00000140798				58	0	0	29	14	32.5581
ABCC11	0	genome.wustl.edu	37	16	48250120	48250120	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	48250120	48250120	C	T	SNP	ABCC11	ENST00000356608	human	ensembl	74_37	-1	known	missense	c.856	p.A286T	0.000	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC11	HGNC	ENSG00000121270				281	0	0	190	22	10.3774
GLYR1	0	genome.wustl.edu	37	16	4873830	4873830	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	4873830	4873830	C	T	SNP	GLYR1	ENST00000321919	human	ensembl	74_37	-1	known	missense	c.616	p.A206T	0.003	NULL	pfam_6PGDH_NADP-bd,pfam_PWWP_dom,superfamily_6-PGluconate_DH_C-like,smart_PWWP_dom,pfscan_PWWP_dom	-	no_errors	GLYR1	HGNC	ENSG00000140632				160	0	0	133	30	18.4049
CBLN1	0	genome.wustl.edu	37	16	49315138	49315138	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	49315138	49315138	C	T	SNP	CBLN1	ENST00000219197	human	ensembl	74_37	-1	known	missense	c.239	p.R80H	1.000	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	CBLN1	HGNC	ENSG00000102924				79	0	0	48	9	15.7895
PPL	0	genome.wustl.edu	37	16	4933784	4933784	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	4933784	4933784	C	T	SNP	PPL	ENST00000345988	human	ensembl	74_37	-1	known	silent	c.4872	p.R1624	0.998	NULL	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	PPL	HGNC	ENSG00000118898				58	0	0	48	14	22.5806
ADCY7	0	genome.wustl.edu	37	16	50342601	50342601	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	50342601	50342601	G	A	SNP	ADCY7	ENST00000254235	human	ensembl	74_37	+1	known	silent	c.1959	p.T653	0.001	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY7	HGNC	ENSG00000121281				36	0	0	25	8	24.2424
BRD7	0	genome.wustl.edu	37	16	50388806	50388806	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	50388806	50388806	G	A	SNP	BRD7	ENST00000394689	human	ensembl	74_37	-1	known	missense	c.286	p.R96W	0.735	NULL	pfam_DUF3512,pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	BRD7	HGNC	ENSG00000166164				120	0	0	132	9	6.38298
NKD1	0	genome.wustl.edu	37	16	50659407	50659407	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	50659407	50659407	C	T	SNP	NKD1	ENST00000268459	human	ensembl	74_37	+1	known	silent	c.378	p.C126	1.000	NULL	pfscan_EF_hand_dom	-	no_errors	NKD1	HGNC	ENSG00000140807				37	0	0	16	9	36
NOD2	0	genome.wustl.edu	37	16	50763760	50763760	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	50763760	50763760	G	T	SNP	NOD2	ENST00000300589	human	ensembl	74_37	+1	known	missense	c.2998	p.A1000S	0.977	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_CARD	-	no_errors	NOD2	HGNC	ENSG00000167207				88	0	0	58	10	14.7059
RAB11FIP3	0	genome.wustl.edu	37	16	511442	511442	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	511442	511442	C	T	SNP	RAB11FIP3	ENST00000457159	human	ensembl	74_37	+1	known	silent	c.753	p.L251	0.531	NULL	pfam_Rab-bd_FIP-RBD,pfscan_EF_hand_dom	-	no_errors	RAB11FIP3	HGNC	ENSG00000090565				144	0	0	122	10	7.57576
CHD9	0	genome.wustl.edu	37	16	53331022	53331022	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	53331022	53331022	G	A	SNP	CHD9	ENST00000398510	human	ensembl	74_37	+1	known	missense	c.5665	p.A1889T	1.000	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD9	HGNC	ENSG00000177200				135	0	0	116	13	10.0775
CHD9	0	genome.wustl.edu	37	16	53358035	53358035	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	53358035	53358035	C	T	SNP	CHD9	ENST00000398510	human	ensembl	74_37	+1	known	missense	c.7922	p.A2641V	1.000	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD9	HGNC	ENSG00000177200				161	0	0	96	25	20.6612
RPGRIP1L	0	genome.wustl.edu	37	16	53675004	53675004	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	53675004	53675004	G	A	SNP	RPGRIP1L	ENST00000379925	human	ensembl	74_37	-1	known	missense	c.2899	p.R967C	0.230	NULL	pfam_DUF3250,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	RPGRIP1L	HGNC	ENSG00000103494				64	0	0	28	7	20
LPCAT2	0	genome.wustl.edu	37	16	55613142	55613142	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	55613142	55613142	A	G	SNP	LPCAT2	ENST00000262134	human	ensembl	74_37	+1	known	missense	c.1436	p.D479G	1.000	NULL	pfam_EF_hand_dom,pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	-	no_errors	LPCAT2	HGNC	ENSG00000087253				82	0	0	58	22	27.5
SLC6A2	0	genome.wustl.edu	37	16	55730216	55730216	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	55730216	55730216	C	T	SNP	SLC6A2	ENST00000219833	human	ensembl	74_37	+1	known	silent	c.1227	p.F409	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_noradrenaline	-	no_errors	SLC6A2	HGNC	ENSG00000103546				137	0	0	107	11	9.32203
CES1	0	genome.wustl.edu	37	16	55855375	55855375	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	55855375	55855375	G	A	SNP	CES1	ENST00000360526	human	ensembl	74_37	-1	known	missense	c.598	p.R200C	0.980	pfam_CarbesteraseB,pfam_AB_hydrolase_3	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CES1	HGNC	ENSG00000198848				41	0	0	24	8	25
CES1	0	genome.wustl.edu	37	16	55862794	55862794	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	55862794	55862794	C	T	SNP	CES1	ENST00000360526	human	ensembl	74_37	-1	known	missense	c.145	p.A49T	0.371	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CES1	HGNC	ENSG00000198848				61	0	0	47	9	16.0714
CES5A	0	genome.wustl.edu	37	16	55883567	55883567	+	Silent	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	55883567	55883567	A	G	SNP	CES5A	ENST00000521992	human	ensembl	74_37	-1	known	silent	c.1479	p.G493	0.903	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CES5A	HGNC	ENSG00000159398				217	0	0	149	8	5.09554
CES5A	0	genome.wustl.edu	37	16	55907786	55907786	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	55907786	55907786	C	T	SNP	CES5A	ENST00000521992	human	ensembl	74_37	-1	known	silent	c.324	p.S108	0.000	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CES5A	HGNC	ENSG00000159398				39	0	0	23	8	25.8065
MT1JP	0	genome.wustl.edu	37	16	56669778	56669778	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	56669778	56669778	C	T	SNP	MT1JP	ENST00000564564	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MT1JP	HGNC	ENSG00000255986				66	0	0	46	26	36.1111
MT1F	0	genome.wustl.edu	37	16	56693075	56693075	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	56693075	56693075	G	A	SNP	MT1F	ENST00000394501	human	ensembl	74_37	+1	known	silent	c.188	p.*63	0.966	NULL	pfam_Metalthion_sfam_euk,superfamily_Metalthion_dom,prints_Metalthion_vert	-	no_errors	MT1F	HGNC	ENSG00000198417				95	0	0	61	20	24.6914
NLRC5	0	genome.wustl.edu	37	16	57060066	57060066	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	57060066	57060066	C	T	SNP	NLRC5	ENST00000262510	human	ensembl	74_37	+1	known	missense	c.1211	p.A404V	0.081	NULL	pfam_Leu-rich_rpt,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_NACHT_NTPase	-	no_errors	NLRC5	HGNC	ENSG00000140853				116	0	0	68	42	38.1818
NLRC5	0	genome.wustl.edu	37	16	57060074	57060074	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	57060074	57060074	G	A	SNP	NLRC5	ENST00000262510	human	ensembl	74_37	+1	known	missense	c.1219	p.A407T	0.541	NULL	pfam_Leu-rich_rpt,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_NACHT_NTPase	-	no_errors	NLRC5	HGNC	ENSG00000140853				101	0	0	95	6	5.94059
POLR2C	0	genome.wustl.edu	37	16	57503154	57503154	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	57503154	57503154	G	A	SNP	POLR2C	ENST00000219252	human	ensembl	74_37	+1	known	silent	c.336	p.T112	0.000	pfam_DNA-dir_RNA_pol_insert,pfam_RBP11-like_dimer,superfamily_DNA-dir_RNA_pol_insert,superfamily_RBP11-like_dimer,smart_DNA-dir_RNA_pol_RpoA/D/Rpb3	pfam_DNA-dir_RNA_pol_insert,pfam_RBP11-like_dimer,superfamily_DNA-dir_RNA_pol_insert,superfamily_RBP11-like_dimer,smart_DNA-dir_RNA_pol_RpoA/D/Rpb3	-	no_errors	POLR2C	HGNC	ENSG00000102978				82	0	0	60	25	29.4118
CCDC135	0	genome.wustl.edu	37	16	57735853	57735853	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	57735853	57735853	G	A	SNP	CCDC135	ENST00000360716	human	ensembl	74_37	+1	known	silent	c.510	p.S170	0.001	NULL	NULL	-	no_errors	CCDC135	HGNC	ENSG00000159625				87	0	0	66	8	10.8108
KIFC3	0	genome.wustl.edu	37	16	57805529	57805529	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	57805529	57805529	G	A	SNP	KIFC3	ENST00000379655	human	ensembl	74_37	-1	known	missense	c.451	p.R151W	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIFC3	HGNC	ENSG00000140859				16	0	0	9	5	35.7143
CNGB1	0	genome.wustl.edu	37	16	57957240	57957240	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	57957240	57957240	G	A	SNP	CNGB1	ENST00000251102	human	ensembl	74_37	-1	known	missense	c.1580	p.A527V	0.115	NULL	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGB1	HGNC	ENSG00000070729				53	0	0	49	12	19.6721
ZNF319	0	genome.wustl.edu	37	16	58031051	58031051	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	58031051	58031051	G	A	SNP	ZNF319	ENST00000299237	human	ensembl	74_37	-1	known	silent	c.1119	p.C373	0.998	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF319	HGNC	ENSG00000166188				67	0	0	34	16	32
ZNF319	0	genome.wustl.edu	37	16	58031575	58031575	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	58031575	58031575	C	T	SNP	ZNF319	ENST00000299237	human	ensembl	74_37	-1	known	missense	c.595	p.D199N	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF319	HGNC	ENSG00000166188				93	0	0	61	23	27.381
CNOT1	0	genome.wustl.edu	37	16	58570932	58570932	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	58570932	58570932	G	A	SNP	CNOT1	ENST00000317147	human	ensembl	74_37	-1	known	silent	c.5607	p.G1869	1.000	NULL	pfam_CCR4-Not_Not1_C,superfamily_ARM-type_fold	-	no_errors	CNOT1	HGNC	ENSG00000125107				92	0	0	73	13	15.1163
CNOT1	0	genome.wustl.edu	37	16	58622736	58622736	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	58622736	58622736	G	A	SNP	CNOT1	ENST00000317147	human	ensembl	74_37	-1	known	silent	c.177	p.G59	1.000	NULL	pfam_CCR4-Not_Not1_C,superfamily_ARM-type_fold	-	no_errors	CNOT1	HGNC	ENSG00000125107				47	0	0	20	11	35.4839
SLC38A7	0	genome.wustl.edu	37	16	58712668	58712668	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	58712668	58712668	G	A	SNP	SLC38A7	ENST00000219320	human	ensembl	74_37	-1	known	missense	c.401	p.A134V	1.000	pfam_AA_transpt_TM,pfam_Tryptophan/tyrosine_permease	pfam_AA_transpt_TM,pfam_Tryptophan/tyrosine_permease	-	no_errors	SLC38A7	HGNC	ENSG00000103042				56	0	0	26	13	33.3333
LINC00922	0	genome.wustl.edu	37	16	65319329	65319329	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	65319329	65319329	C	T	SNP	LINC00922	ENST00000564041	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LINC00922	HGNC	ENSG00000261742				61	0	0	32	10	23.8095
CDH5	0	genome.wustl.edu	37	16	66420974	66420974	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	66420974	66420974	C	T	SNP	CDH5	ENST00000341529	human	ensembl	74_37	+1	known	missense	c.473	p.A158V	0.864	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH5	HGNC	ENSG00000179776				34	0	0	30	5	14.2857
CMTM2	0	genome.wustl.edu	37	16	66613521	66613521	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	66613521	66613521	A	C	SNP	CMTM2	ENST00000268595	human	ensembl	74_37	+1	known	missense	c.11	p.K4T	0.018	NULL	NULL	-	no_errors	CMTM2	HGNC	ENSG00000140932				51	0	0	27	13	32.5
NAE1	0	genome.wustl.edu	37	16	66852491	66852491	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	66852491	66852491	C	T	SNP	NAE1	ENST00000290810	human	ensembl	74_37	-1	known	silent	c.561	p.K187	0.996	superfamily_Molybdenum_cofac_synth_MoeB	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB	-	no_errors	NAE1	HGNC	ENSG00000159593				66	0	0	52	4	7.14286
CBFB	0	genome.wustl.edu	37	16	67116168	67116168	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	67116168	67116168	G	A	SNP	CBFB	ENST00000290858	human	ensembl	74_37	+1	known	missense	c.452	p.R151H	1.000	pfam_CBF_beta	pfam_CBF_beta,superfamily_CBF_beta	-	no_errors	CBFB	HGNC	ENSG00000067955				72	0	0	36	18	33.3333
C16orf70	0	genome.wustl.edu	37	16	67168349	67168349	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	67168349	67168349	C	T	SNP	C16orf70	ENST00000219139	human	ensembl	74_37	+1	known	nonsense	c.640	p.R214*	1.000	pfam_UPF0183	pfam_UPF0183	-	no_errors	C16orf70	HGNC	ENSG00000125149				223	1	0.446429	151	46	23.3503
ELMO3	0	genome.wustl.edu	37	16	67234673	67234673	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	67234673	67234673	C	T	SNP	ELMO3	ENST00000393997	human	ensembl	74_37	+1	known	silent	c.786	p.S262	0.993	pfam_DUF3361,superfamily_ARM-type_fold	pfam_DUF3361,pfam_Engulfment_cell_motility_ELMO,superfamily_ARM-type_fold	-	no_errors	ELMO3	HGNC	ENSG00000102890				20	0	0	15	5	25
ELMO3	0	genome.wustl.edu	37	16	67236873	67236873	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	67236873	67236873	G	A	SNP	ELMO3	ENST00000393997	human	ensembl	74_37	+1	known	silent	c.1800	p.T600	0.541	NULL	pfam_DUF3361,pfam_Engulfment_cell_motility_ELMO,superfamily_ARM-type_fold	-	no_errors	ELMO3	HGNC	ENSG00000102890				25	0	0	27	6	18.1818
TPPP3	0	genome.wustl.edu	37	16	67424250	67424250	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	67424250	67424250	C	T	SNP	TPPP3	ENST00000290942	human	ensembl	74_37	-1	known	missense	c.358	p.G120S	0.723	pfam_P25-alpha	pfam_P25-alpha	-	no_errors	TPPP3	HGNC	ENSG00000159713				99	0	0	69	21	23.3333
ZDHHC1	0	genome.wustl.edu	37	16	67432185	67432185	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	67432185	67432185	C	T	SNP	ZDHHC1	ENST00000348579	human	ensembl	74_37	-1	known	missense	c.857	p.R286H	1.000	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC1	HGNC	ENSG00000159714				77	0	0	69	5	6.75676
HSD11B2	0	genome.wustl.edu	37	16	67470767	67470767	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	67470767	67470767	G	A	SNP	HSD11B2	ENST00000326152	human	ensembl	74_37	+1	known	missense	c.1079	p.R360H	1.000	NULL	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH	-	no_errors	HSD11B2	HGNC	ENSG00000176387				92	0	0	43	24	35.8209
RANBP10	0	genome.wustl.edu	37	16	67763353	67763353	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	67763353	67763353	C	T	SNP	RANBP10	ENST00000317506	human	ensembl	74_37	-1	known	silent	c.1182	p.A394	0.004	NULL	pfam_SPRY_rcpt,pfam_CTLH/CRA,pfam_LisH_dimerisation_subgr,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,smart_CTLH_C,smart_CRA_dom,pfscan_B30.2/SPRY,pfscan_LisH_dimerisation,pfscan_CTLH_C	-	no_errors	RANBP10	HGNC	ENSG00000141084				57	0	0	29	7	19.4444
NRN1L	0	genome.wustl.edu	37	16	67920119	67920119	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	67920119	67920119	C	T	SNP	NRN1L	ENST00000339176	human	ensembl	74_37	+1	known	missense	c.455	p.A152V	0.971	NULL	NULL	-	no_errors	NRN1L	HGNC	ENSG00000188038				21	0	0	7	4	36.3636
CTRL	0	genome.wustl.edu	37	16	67964654	67964654	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	67964654	67964654	G	T	SNP	CTRL	ENST00000574481	human	ensembl	74_37	-1	known	missense	c.293	p.P98H	0.007	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	CTRL	HGNC	ENSG00000141086				67	0	0	38	15	28.3019
DDX28	0	genome.wustl.edu	37	16	68055612	68055612	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	68055612	68055612	G	A	SNP	DDX28	ENST00000332395	human	ensembl	74_37	-1	known	silent	c.1494	p.T498	0.001	superfamily_P-loop_NTPase,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX28	HGNC	ENSG00000182810				40	0	0	36	3	7.69231
PLA2G15	0	genome.wustl.edu	37	16	68289879	68289879	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	68289879	68289879	G	A	SNP	PLA2G15	ENST00000219345	human	ensembl	74_37	+1	known	missense	c.713	p.R238H	0.996	pfam_LACT/PDAT_acylTrfase	pfam_LACT/PDAT_acylTrfase	-	no_errors	PLA2G15	HGNC	ENSG00000103066				13	0	0	6	3	33.3333
SLC7A6OS	0	genome.wustl.edu	37	16	68336334	68336334	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	68336334	68336334	C	T	SNP	SLC7A6OS	ENST00000263997	human	ensembl	74_37	-1	known	missense	c.749	p.R250H	0.998	NULL	NULL	-	no_errors	SLC7A6OS	HGNC	ENSG00000103061				138	0	0	116	12	9.375
CDH3	0	genome.wustl.edu	37	16	68725731	68725731	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	68725731	68725731	C	T	SNP	CDH3	ENST00000264012	human	ensembl	74_37	+1	known	missense	c.1904	p.A635V	0.996	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH3	HGNC	ENSG00000062038				108	0	0	76	14	15.5556
TERF2	0	genome.wustl.edu	37	16	69390889	69390889	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	69390889	69390889	G	A	SNP	TERF2	ENST00000254942	human	ensembl	74_37	-1	known	missense	c.1541	p.A514V	1.000	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pirsf_Telomere_repeat-bd-1/2,pfscan_Myb-like_dom	pfam_Telomere_rpt-bd_fac_dimer_dom,pfam_SANT/Myb,superfamily_Telomere_rpt-bd_fac_dimer_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pirsf_Telomere_repeat-bd-1/2,pfscan_Myb-like_dom	-	no_errors	TERF2	HGNC	ENSG00000132604				117	0	0	86	24	21.8182
WWP2	0	genome.wustl.edu	37	16	69874131	69874131	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	69874131	69874131	T	G	SNP	WWP2	ENST00000356003	human	ensembl	74_37	+1	known	missense	c.443	p.L148R	1.000	NULL	pfam_HECT,pfam_WW_dom,superfamily_HECT,superfamily_C2_dom,superfamily_WW_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_WW_dom	-	no_errors	WWP2	HGNC	ENSG00000198373				86	0	0	56	28	33.3333
WWP2	0	genome.wustl.edu	37	16	69942692	69942692	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	69942692	69942692	C	T	SNP	WWP2	ENST00000356003	human	ensembl	74_37	+1	known	missense	c.943	p.R315C	0.993	pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	pfam_HECT,pfam_WW_dom,superfamily_HECT,superfamily_C2_dom,superfamily_WW_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_WW_dom	-	no_errors	WWP2	HGNC	ENSG00000198373				97	0	0	80	35	30.4348
PDXDC2P	0	genome.wustl.edu	37	16	70029986	70029986	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	70029986	70029986	C	T	SNP	PDXDC2P	ENST00000325845	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.514	-	-	-	no_errors	PDXDC2P	HGNC	ENSG00000196696				29	0	0	9	3	25
HYDIN	0	genome.wustl.edu	37	16	70867804	70867804	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	70867804	70867804	G	A	SNP	HYDIN	ENST00000393567	human	ensembl	74_37	-1	putative	silent	c.13665	p.G4555	0.583	NULL	superfamily_P-loop_NTPase,superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423				20	0	0	17	6	26.087
HYDIN	0	genome.wustl.edu	37	16	70989429	70989429	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	70989429	70989429	G	A	SNP	HYDIN	ENST00000393567	human	ensembl	74_37	-1	putative	silent	c.6165	p.S2055	0.013	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase,superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423				26	0	0	26	12	31.5789
CHST4	0	genome.wustl.edu	37	16	71570901	71570901	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	71570901	71570901	C	T	SNP	CHST4	ENST00000338482	human	ensembl	74_37	+1	known	silent	c.321	p.S107	0.582	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST4	HGNC	ENSG00000140835				60	0	0	41	16	28.0702
WDR90	0	genome.wustl.edu	37	16	716352	716352	+	Splice_Site	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	716352	716352	T	C	SNP	WDR90	ENST00000315764	human	ensembl	74_37	+1	known	splice_site	c.537+2	e3+2	0.990	-	-	-	no_errors	WDR90	HGNC	ENSG00000161996				51	0	0	31	12	27.907
DHX38	0	genome.wustl.edu	37	16	72130190	72130190	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	72130190	72130190	G	A	SNP	DHX38	ENST00000268482	human	ensembl	74_37	+1	known	missense	c.134	p.R45H	1.000	NULL	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX38	HGNC	ENSG00000140829				46	0	0	27	9	25
DHX38	0	genome.wustl.edu	37	16	72130838	72130838	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	72130838	72130838	G	A	SNP	DHX38	ENST00000268482	human	ensembl	74_37	+1	known	silent	c.441	p.S147	0.089	NULL	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX38	HGNC	ENSG00000140829				117	0	0	66	35	34.6535
DHX38	0	genome.wustl.edu	37	16	72138392	72138392	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	72138392	72138392	C	T	SNP	DHX38	ENST00000268482	human	ensembl	74_37	+1	known	missense	c.2018	p.A673V	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX38	HGNC	ENSG00000140829				36	0	0	36	9	20
PMFBP1	0	genome.wustl.edu	37	16	72162994	72162994	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	72162994	72162994	G	A	SNP	PMFBP1	ENST00000537465	human	ensembl	74_37	-1	known	missense	c.1936	p.R646W	0.001	NULL	NULL	-	no_errors	PMFBP1	HGNC	ENSG00000118557				202	0	0	136	45	24.8619
RHOT2	0	genome.wustl.edu	37	16	721922	721922	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	721922	721922	G	A	SNP	RHOT2	ENST00000315082	human	ensembl	74_37	+1	known	silent	c.1017	p.A339	0.731	pirsf_Rho_GTPase_Mt,pfscan_EF_hand_dom	pirsf_Rho_GTPase_Mt,pfam_EF_hand_assoc_2,pfam_MIRO-like,pfam_EF_hand_assoc_1,pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,pfscan_EF_hand_dom	-	no_errors	RHOT2	HGNC	ENSG00000140983				38	0	0	25	9	26.4706
ZFHX3	0	genome.wustl.edu	37	16	72822480	72822480	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	72822480	72822480	C	T	SNP	ZFHX3	ENST00000268489	human	ensembl	74_37	-1	known	missense	c.9695	p.R3232H	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836				158	0	0	100	38	27.5362
ZFHX3	0	genome.wustl.edu	37	16	72830135	72830135	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	72830135	72830135	C	T	SNP	ZFHX3	ENST00000268489	human	ensembl	74_37	-1	known	missense	c.6446	p.R2149H	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836				52	0	0	35	3	7.89474
ZFHX3	0	genome.wustl.edu	37	16	72991508	72991508	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	72991508	72991508	C	T	SNP	ZFHX3	ENST00000268489	human	ensembl	74_37	-1	known	missense	c.2537	p.R846H	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836				62	0	0	35	13	27.0833
NPIPB15	0	genome.wustl.edu	37	16	74415485	74415485	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	74415485	74415485	C	T	SNP	NPIPB15	ENST00000429990	human	ensembl	74_37	+1	known	silent	c.138	p.G46	0.031	NULL	NULL	-	no_errors	NPIPB15	HGNC	ENSG00000196436				34	0	0	24	7	22.5806
CLEC18B	0	genome.wustl.edu	37	16	74455114	74455114	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	74455114	74455114	C	T	SNP	CLEC18B	ENST00000339953	human	ensembl	74_37	-1	known	missense	c.55	p.A19T	0.970	NULL	pfam_CAP_domain,pfam_C-type_lectin,superfamily_CAP_domain,superfamily_C-type_lectin_fold,smart_Allrgn_V5/Tpx1,smart_EG-like_dom,smart_C-type_lectin,pfscan_EG-like_dom,pfscan_C-type_lectin,prints_Allrgn_V5/Tpx1	-	no_errors	CLEC18B	HGNC	ENSG00000140839				69	0	0	55	7	11.2903
LDHD	0	genome.wustl.edu	37	16	75149234	75149234	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	75149234	75149234	G	A	SNP	LDHD	ENST00000300051	human	ensembl	74_37	-1	known	silent	c.189	p.C63	0.616	superfamily_FAD-bd_2	pfam_FAD-linked_oxidase_C,pfam_Oxid_FAD_bind_N,superfamily_FAD-linked_Oxase-like_C,superfamily_FAD-bd_2	-	no_errors	LDHD	HGNC	ENSG00000166816				85	0	0	84	10	10.6383
ADAT1	0	genome.wustl.edu	37	16	75654554	75654554	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	75654554	75654554	G	A	SNP	ADAT1	ENST00000307921	human	ensembl	74_37	-1	known	silent	c.144	p.C48	0.000	smart_A_deamin	pfam_A_deamin,smart_A_deamin,pfscan_A_deamin	-	no_errors	ADAT1	HGNC	ENSG00000065457				61	0	0	62	7	10.1449
CNTNAP4	0	genome.wustl.edu	37	16	76569665	76569665	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	76569665	76569665	G	A	SNP	CNTNAP4	ENST00000307431	human	ensembl	74_37	+1	known	silent	c.2976	p.G992	1.000	superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,pfscan_EG-like_dom	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP4	HGNC	ENSG00000152910				31	0	0	23	8	25.8065
NARFL	0	genome.wustl.edu	37	16	780500	780500	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	780500	780500	C	T	SNP	NARFL	ENST00000251588	human	ensembl	74_37	-1	known	missense	c.1348	p.D450N	0.594	pfam_Fe_hydrogenase_ssu-like,superfamily_Fe_hydrogenase,smart_Fe_hydrogenase_ssu-like	pfam_Fe_hydrogenase_lsu_C,pfam_Fe_hydrogenase_ssu-like,superfamily_Fe_hydrogenase,smart_Fe_hydrogenase_ssu-like	-	no_errors	NARFL	HGNC	ENSG00000103245				54	0	0	35	11	23.913
C16orf46	0	genome.wustl.edu	37	16	81095510	81095510	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	81095510	81095510	G	A	SNP	C16orf46	ENST00000299578	human	ensembl	74_37	-1	known	silent	c.444	p.S148	0.774	NULL	NULL	-	no_errors	C16orf46	HGNC	ENSG00000166455				187	0	0	100	32	24.2424
BCMO1	0	genome.wustl.edu	37	16	81279097	81279097	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	81279097	81279097	C	T	SNP	BCMO1	ENST00000425577	human	ensembl	74_37	+1	known	missense	c.5	p.A2V	1.000	NULL	pfam_Carotenoid_Oase	-	no_errors	BCMO1	HGNC	ENSG00000135697				195	0	0	136	46	25.2747
PLCG2	0	genome.wustl.edu	37	16	81957177	81957177	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	81957177	81957177	G	A	SNP	PLCG2	ENST00000359376	human	ensembl	74_37	+1	known	missense	c.2395	p.V799I	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_SH3_domain,smart_SH3_domain,smart_Pleckstrin_homology,pirsf_PLC-gamma,pfscan_SH3_domain,prints_SH3_domain	pfam_PLipase_C_PInositol-sp_X_dom,pfam_SH2,pfam_PLipase_C_Pinositol-sp_Y,pfam_SH3_domain,pfam_C2_dom,pfam_PLipase_C_EF-hand-like,pfam_SH3_2,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_SH2,smart_SH3_domain,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pirsf_PLC-gamma,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C,prints_SH2,prints_SH3_domain	-	no_errors	PLCG2	HGNC	ENSG00000197943				34	0	0	18	5	21.7391
PLCG2	0	genome.wustl.edu	37	16	81973507	81973507	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	81973507	81973507	C	T	SNP	PLCG2	ENST00000359376	human	ensembl	74_37	+1	known	silent	c.3324	p.G1108	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pirsf_PLC-gamma,pfscan_C2_dom	pfam_PLipase_C_PInositol-sp_X_dom,pfam_SH2,pfam_PLipase_C_Pinositol-sp_Y,pfam_SH3_domain,pfam_C2_dom,pfam_PLipase_C_EF-hand-like,pfam_SH3_2,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_SH2,smart_SH3_domain,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pirsf_PLC-gamma,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C,prints_SH2,prints_SH3_domain	-	no_errors	PLCG2	HGNC	ENSG00000197943				97	0	0	80	7	8.04598
HSD17B2	0	genome.wustl.edu	37	16	82131906	82131906	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	82131906	82131906	C	T	SNP	HSD17B2	ENST00000199936	human	ensembl	74_37	+1	known	silent	c.1029	p.G343	0.000	NULL	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	HSD17B2	HGNC	ENSG00000086696				159	0	0	144	18	11.1111
DNAAF1	0	genome.wustl.edu	37	16	84211351	84211351	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	84211351	84211351	C	T	SNP	DNAAF1	ENST00000378553	human	ensembl	74_37	+1	known	silent	c.2082	p.A694	0.000	NULL	NULL	-	no_errors	DNAAF1	HGNC	ENSG00000154099				86	0	0	68	16	19.0476
ENSG00000261286	0	genome.wustl.edu	37	16	84494133	84494133	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	84494133	84494133	C	T	SNP	ENSG00000261286	ENST00000565700	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-517C16.2	Clone_based_vega_gene	ENSG00000261286				40	0	0	33	12	26.6667
FOXF1	0	genome.wustl.edu	37	16	86544554	86544554	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	86544554	86544554	G	A	SNP	FOXF1	ENST00000262426	human	ensembl	74_37	+1	known	missense	c.379	p.A127T	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXF1	HGNC	ENSG00000103241				91	0	0	60	25	29.4118
MTHFSD	0	genome.wustl.edu	37	16	86575334	86575334	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	86575334	86575334	C	T	SNP	MTHFSD	ENST00000360900	human	ensembl	74_37	-1	known	missense	c.650	p.R217H	0.911	NULL	pfam_FTHF_cligase,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	MTHFSD	HGNC	ENSG00000103248				32	0	0	22	8	26.6667
FOXL1	0	genome.wustl.edu	37	16	86612374	86612374	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	86612374	86612374	G	A	SNP	FOXL1	ENST00000320241	human	ensembl	74_37	+1	known	silent	c.45	p.S15	0.223	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXL1	HGNC	ENSG00000176678				41	0	0	37	15	28.8462
SNAI3	0	genome.wustl.edu	37	16	88744868	88744868	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	88744868	88744868	G	A	SNP	SNAI3	ENST00000332281	human	ensembl	74_37	-1	known	silent	c.867	p.C289	0.988	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SNAI3	HGNC	ENSG00000185669				8	0	0	10	7	41.1765
CDT1	0	genome.wustl.edu	37	16	88872194	88872194	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	88872194	88872194	G	A	SNP	CDT1	ENST00000301019	human	ensembl	74_37	+1	known	missense	c.749	p.R250H	1.000	pfam_CDT1_Gemini-bd-like	pfam_CDT1_Gemini-bd-like	-	no_errors	CDT1	HGNC	ENSG00000167513				24	0	0	21	5	19.2308
APRT	0	genome.wustl.edu	37	16	88876190	88876190	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	88876190	88876190	G	A	SNP	APRT	ENST00000378364	human	ensembl	74_37	-1	known	silent	c.459	p.C153	0.592	pfam_PRibTrfase_dom,tigrfam_Ade_phspho_trans	pfam_PRibTrfase_dom,tigrfam_Ade_phspho_trans	-	no_errors	APRT	HGNC	ENSG00000198931				40	0	0	28	10	26.3158
ANKRD11	0	genome.wustl.edu	37	16	89348895	89348895	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	89348895	89348895	T	C	SNP	ANKRD11	ENST00000301030	human	ensembl	74_37	-1	known	missense	c.4055	p.H1352R	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD11	HGNC	ENSG00000167522				68	0	0	51	7	12.069
FANCA	0	genome.wustl.edu	37	16	89857839	89857839	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	89857839	89857839	G	A	SNP	FANCA	ENST00000389301	human	ensembl	74_37	-1	known	missense	c.1331	p.A444V	0.001	NULL	pfam_Fanconia,prints_Fanconia	-	no_errors	FANCA	HGNC	ENSG00000187741				34	0	0	8	7	46.6667
USP7	0	genome.wustl.edu	37	16	8994445	8994445	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	8994445	8994445	C	T	SNP	USP7	ENST00000344836	human	ensembl	74_37	-1	known	missense	c.2251	p.V751M	1.000	NULL	pfam_Peptidase_C19/C67,pfam_MATH,pfam_USP7_ICP0-binding_dom,superfamily_TRAF-like,smart_MATH,pfscan_MATH,pfscan_Peptidase_C19/C67	-	no_errors	USP7	HGNC	ENSG00000187555				89	0	0	59	27	31.3953
MC1R	0	genome.wustl.edu	37	16	89986038	89986038	+	Silent	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	89986038	89986038	C	A	SNP	MC1R	ENST00000555147	human	ensembl	74_37	+1	known	silent	c.372	p.T124	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_MSH_rcpt,prints_Melcrt_ACTH_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_MSH_rcpt,prints_Melcrt_ACTH_rcpt,prints_GPCR_Rhodpsn,prints_Melancort_rcpt	-	no_errors	MC1R	HGNC	ENSG00000258839				30	0	0	34	5	12.8205
TUBB3	0	genome.wustl.edu	37	16	90001913	90001913	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	90001913	90001913	G	A	SNP	TUBB3	ENST00000315491	human	ensembl	74_37	+1	known	missense	c.1054	p.A352T	1.000	pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tub_FtsZ_C,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Gamma_tubulin,prints_Alpha_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB3	Uniprot_gn	ENSG00000258947				176	0	0	108	33	23.4043
GAS8	0	genome.wustl.edu	37	16	90099232	90099232	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	90099232	90099232	G	A	SNP	GAS8	ENST00000268699	human	ensembl	74_37	+1	known	missense	c.395	p.R132H	0.274	NULL	NULL	-	no_errors	GAS8	HGNC	ENSG00000141013				63	0	0	49	11	18.3333
MYH13	0	genome.wustl.edu	37	17	10231321	10231321	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	10231321	10231321	C	A	SNP	MYH13	ENST00000252172	human	ensembl	74_37	-1	known	missense	c.2553	p.K851N	0.995	NULL	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH13	HGNC	ENSG00000006788				68	0	0	43	6	12.2449
ABR	0	genome.wustl.edu	37	17	1028590	1028590	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	1028590	1028590	C	T	SNP	ABR	ENST00000302538	human	ensembl	74_37	-1	known	silent	c.174	p.P58	1.000	NULL	pfam_RhoGAP_dom,pfam_DH-domain,pfam_Pleckstrin_homology,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_DH-domain,superfamily_C2_dom,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_dom,smart_RhoGAP_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom,pfscan_DH-domain	-	no_errors	ABR	HGNC	ENSG00000159842				54	0	0	33	15	31.25
ABR	0	genome.wustl.edu	37	17	1028600	1028600	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	1028600	1028600	G	A	SNP	ABR	ENST00000302538	human	ensembl	74_37	-1	known	missense	c.164	p.T55I	1.000	NULL	pfam_RhoGAP_dom,pfam_DH-domain,pfam_Pleckstrin_homology,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_DH-domain,superfamily_C2_dom,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_dom,smart_RhoGAP_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom,pfscan_DH-domain	-	no_errors	ABR	HGNC	ENSG00000159842				63	0	0	42	5	10.6383
MYH4	0	genome.wustl.edu	37	17	10353795	10353795	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	10353795	10353795	G	A	SNP	MYH4	ENST00000255381	human	ensembl	74_37	-1	known	missense	c.4156	p.R1386C	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH4	HGNC	ENSG00000264424				142	0	0	103	30	22.5564
MYH2	0	genome.wustl.edu	37	17	10438444	10438444	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	10438444	10438444	C	T	SNP	MYH2	ENST00000245503	human	ensembl	74_37	-1	known	missense	c.2126	p.R709H	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_Ribosomal_L29,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH2	HGNC	ENSG00000125414				98	0	0	72	20	21.7391
MYH2	0	genome.wustl.edu	37	17	10442798	10442798	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	10442798	10442798	C	T	SNP	MYH2	ENST00000245503	human	ensembl	74_37	-1	known	missense	c.1229	p.G410D	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_Ribosomal_L29,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH2	HGNC	ENSG00000125414				188	0	0	141	31	18.0233
MYH3	0	genome.wustl.edu	37	17	10532947	10532947	+	Silent	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	10532947	10532947	G	T	SNP	MYH3	ENST00000226209	human	ensembl	74_37	-1	known	silent	c.5763	p.L1921	0.565	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH3	HGNC	ENSG00000109063				61	0	0	48	5	9.43396
MYH3	0	genome.wustl.edu	37	17	10554850	10554850	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	10554850	10554850	C	T	SNP	MYH3	ENST00000226209	human	ensembl	74_37	-1	known	missense	c.484	p.A162T	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH3	HGNC	ENSG00000109063				235	0	0	171	16	8.55615
MYOCD	0	genome.wustl.edu	37	17	12656117	12656117	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	12656117	12656117	C	T	SNP	MYOCD	ENST00000425538	human	ensembl	74_37	+1	known	silent	c.1512	p.G504	0.004	NULL	pfam_RPEL_repeat,pfam_SAP_dom,smart_RPEL_repeat,smart_SAP_dom,pfscan_RPEL_repeat,pfscan_SAP_dom	-	no_errors	MYOCD	HGNC	ENSG00000141052				38	0	0	25	4	13.7931
MYOCD	0	genome.wustl.edu	37	17	12666430	12666430	+	Silent	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	12666430	12666430	A	G	SNP	MYOCD	ENST00000425538	human	ensembl	74_37	+1	known	silent	c.2430	p.Q810	0.323	NULL	pfam_RPEL_repeat,pfam_SAP_dom,smart_RPEL_repeat,smart_SAP_dom,pfscan_RPEL_repeat,pfscan_SAP_dom	-	no_errors	MYOCD	HGNC	ENSG00000141052				147	0	0	81	33	28.9474
TVP23C	0	genome.wustl.edu	37	17	15441469	15441469	+	Splice_Site	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	15441469	15441469	C	T	SNP	TVP23C	ENST00000523573	human	ensembl	74_37	-1	known	splice_site	c.162-2	e5-2	0.998	-	-	-	no_errors	TVP23C	HGNC	ENSG00000175106				88	0	0	98	24	19.6721
101928503	0	genome.wustl.edu	37	17	15469094	15469094	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	15469094	15469094	C	T	SNP	101928503	ENST00000312127	human	ensembl	74_37	-1	known	missense	c.485	p.R162H	0.000	NULL	NULL	-	no_errors	CDRT1	Uniprot_gn	ENSG00000181464				84	0	0	30	43	58.9041
TRIM16	0	genome.wustl.edu	37	17	15532000	15532000	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	15532000	15532000	C	T	SNP	TRIM16	ENST00000336708	human	ensembl	74_37	-1	known	missense	c.1624	p.A542T	0.006	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl_sf,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,prints_Butyrophylin	-	no_errors	TRIM16	HGNC	ENSG00000221926				37	0	0	31	5	13.8889
ZSWIM7	0	genome.wustl.edu	37	17	15881300	15881300	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	15881300	15881300	G	A	SNP	ZSWIM7	ENST00000399280	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZSWIM7	HGNC	ENSG00000214941				43	0	0	32	10	23.8095
NCOR1	0	genome.wustl.edu	37	17	15968937	15968937	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	15968937	15968937	C	T	SNP	NCOR1	ENST00000268712	human	ensembl	74_37	-1	known	missense	c.4813	p.A1605T	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027				76	0	0	61	9	12.8571
NCOR1	0	genome.wustl.edu	37	17	15974755	15974755	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	15974755	15974755	T	C	SNP	NCOR1	ENST00000268712	human	ensembl	74_37	-1	known	missense	c.4120	p.T1374A	0.406	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027				164	1	0.606061	120	33	21.5686
NCOR1	0	genome.wustl.edu	37	17	16024413	16024413	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	16024413	16024413	G	A	SNP	NCOR1	ENST00000268712	human	ensembl	74_37	-1	known	missense	c.1805	p.A602V	0.997	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027				30	0	0	27	6	18.1818
WDR81	0	genome.wustl.edu	37	17	1634494	1634494	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	1634494	1634494	C	T	SNP	WDR81	ENST00000409644	human	ensembl	74_37	+1	known	missense	c.4099	p.R1367W	1.000	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Kinase-like_dom,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR81	HGNC	ENSG00000167716				36	0	0	26	4	13.3333
WDR81	0	genome.wustl.edu	37	17	1636038	1636038	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	1636038	1636038	G	A	SNP	WDR81	ENST00000409644	human	ensembl	74_37	+1	known	missense	c.4402	p.V1468M	0.997	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Kinase-like_dom,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR81	HGNC	ENSG00000167716				20	0	0	8	10	55.5556
ZNF624	0	genome.wustl.edu	37	17	16538059	16538059	+	Silent	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	16538059	16538059	T	C	SNP	ZNF624	ENST00000311331	human	ensembl	74_37	-1	known	silent	c.165	p.T55	0.913	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF624	HGNC	ENSG00000197566				114	0	0	80	5	5.88235
USP32P1	0	genome.wustl.edu	37	17	16701462	16701462	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	16701462	16701462	C	T	SNP	USP32P1	ENST00000341745	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.470	-	-	-	no_errors	USP32P1	HGNC	ENSG00000188933				22	0	0	18	4	18.1818
SMYD4	0	genome.wustl.edu	37	17	1703996	1703996	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	1703996	1703996	G	A	SNP	SMYD4	ENST00000305513	human	ensembl	74_37	-1	known	missense	c.692	p.A231V	0.434	NULL	pfam_SET_dom,pfam_Znf_MYND,pfscan_SET_dom,pfscan_Znf_MYND	-	no_errors	SMYD4	HGNC	ENSG00000186532				154	1	0.645161	145	8	5.22876
MPRIP	0	genome.wustl.edu	37	17	17062260	17062260	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	17062260	17062260	G	A	SNP	MPRIP	ENST00000395811	human	ensembl	74_37	+1	known	missense	c.1990	p.E664K	0.972	NULL	pfam_Pleckstrin_homology,superfamily_Ferritin-like_SF,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	MPRIP	HGNC	ENSG00000133030				26	0	0	20	5	20
TOM1L2	0	genome.wustl.edu	37	17	17766053	17766053	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	17766053	17766053	C	T	SNP	TOM1L2	ENST00000379504	human	ensembl	74_37	-1	known	silent	c.1194	p.Q398	0.870	pirsf_TOM1	pfam_VHS,pfam_GAT,superfamily_ENTH_VHS,smart_VHS_subgr,pirsf_TOM1,pfscan_GAT,pfscan_VHS	-	no_errors	TOM1L2	HGNC	ENSG00000175662				288	0	0	173	62	26.383
MYO15A	0	genome.wustl.edu	37	17	18039937	18039937	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	18039937	18039937	C	T	SNP	MYO15A	ENST00000205890	human	ensembl	74_37	+1	known	silent	c.4716	p.N1572	0.967	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_SH3_2,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_SH3_domain,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO15A	HGNC	ENSG00000091536				30	0	0	23	6	20.6897
MYO15A	0	genome.wustl.edu	37	17	18054496	18054496	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	18054496	18054496	G	T	SNP	MYO15A	ENST00000205890	human	ensembl	74_37	+1	known	missense	c.7546	p.A2516S	0.000	NULL	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_SH3_2,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_SH3_domain,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO15A	HGNC	ENSG00000091536				93	0	0	51	5	8.92857
TOP3A	0	genome.wustl.edu	37	17	18205934	18205934	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	18205934	18205934	G	A	SNP	TOP3A	ENST00000321105	human	ensembl	74_37	-1	known	silent	c.603	p.S201	0.704	pfam_Topo_IA_cen,superfamily_Topo_IA_core_domain,smart_Topo_IA_2	pfam_Topo_IA_cen,pfam_Znf_GRF,pfam_Toprim_domain,pfam_Topo_IA_Znf,superfamily_Topo_IA_core_domain,superfamily_Znf_CCHC,smart_Toprim_domain,smart_Topo_IA_2,smart_Topo_IA_DNA-bd,prints_Topo_IA	-	no_errors	TOP3A	HGNC	ENSG00000177302				68	0	0	42	14	25
KRT16P1	0	genome.wustl.edu	37	17	18345182	18345182	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	18345182	18345182	C	T	SNP	KRT16P1	ENST00000581027	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	KRT16P1	HGNC	ENSG00000214856				12	0	0	6	4	40
FBXW10	0	genome.wustl.edu	37	17	18668087	18668087	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	18668087	18668087	G	A	SNP	FBXW10	ENST00000308799	human	ensembl	74_37	+1	known	missense	c.1553	p.R518Q	0.913	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_F-box_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	FBXW10	HGNC	ENSG00000171931				99	0	0	66	22	25
PRPSAP2	0	genome.wustl.edu	37	17	18770597	18770597	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	18770597	18770597	G	A	SNP	PRPSAP2	ENST00000268835	human	ensembl	74_37	+1	known	missense	c.122	p.R41Q	1.000	tigrfam_Rib-P_diPkinase	tigrfam_Rib-P_diPkinase	-	no_errors	PRPSAP2	HGNC	ENSG00000141127				49	0	0	25	4	13.7931
PRPSAP2	0	genome.wustl.edu	37	17	18781095	18781095	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	18781095	18781095	A	G	SNP	PRPSAP2	ENST00000268835	human	ensembl	74_37	+1	known	missense	c.324	p.I108M	0.779	tigrfam_Rib-P_diPkinase	tigrfam_Rib-P_diPkinase	-	no_errors	PRPSAP2	HGNC	ENSG00000141127				122	0	0	89	27	23.2759
MAPK7	0	genome.wustl.edu	37	17	19283208	19283208	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	19283208	19283208	G	A	SNP	MAPK7	ENST00000308406	human	ensembl	74_37	+1	known	missense	c.346	p.A116T	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAPK7	HGNC	ENSG00000166484				96	0	0	90	10	10
MAPK7	0	genome.wustl.edu	37	17	19284190	19284190	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	19284190	19284190	C	T	SNP	MAPK7	ENST00000308406	human	ensembl	74_37	+1	known	missense	c.668	p.A223V	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAPK7	HGNC	ENSG00000166484				31	0	0	12	10	45.4545
MAPK7	0	genome.wustl.edu	37	17	19286236	19286236	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	19286236	19286236	C	T	SNP	MAPK7	ENST00000308406	human	ensembl	74_37	+1	known	silent	c.2274	p.G758	0.352	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAPK7	HGNC	ENSG00000166484				88	0	0	51	15	22.7273
SLC47A2	0	genome.wustl.edu	37	17	19584902	19584902	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	19584902	19584902	C	T	SNP	SLC47A2	ENST00000325411	human	ensembl	74_37	-1	known	missense	c.1354	p.G452S	0.919	pfam_MATE,tigrfam_MATE	pfam_MATE,tigrfam_MATE	-	no_errors	SLC47A2	HGNC	ENSG00000180638				62	0	0	37	22	37.2881
SMG6	0	genome.wustl.edu	37	17	1964860	1964860	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	1964860	1964860	G	A	SNP	SMG6	ENST00000263073	human	ensembl	74_37	-1	known	missense	c.4186	p.R1396C	1.000	smart_PIN_dom	pfam_EST1,smart_PIN_dom	-	no_errors	SMG6	HGNC	ENSG00000070366				11	0	0	4	3	42.8571
CCDC144CP	0	genome.wustl.edu	37	17	20224852	20224852	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	20224852	20224852	G	A	SNP	CCDC144CP	ENST00000340196	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	CCDC144CP	HGNC	ENSG00000154898				130	0	0	97	20	17.094
LOC440416	0	genome.wustl.edu	37	17	20884809	20884809	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	20884809	20884809	G	A	SNP	LOC440416	ENST00000439794	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.576	-	-	-	no_errors	RP11-344E13.3	Clone_based_vega_gene	ENSG00000233098				12	0	0	8	3	27.2727
TMEM11	0	genome.wustl.edu	37	17	21101798	21101798	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	21101798	21101798	C	T	SNP	TMEM11	ENST00000317635	human	ensembl	74_37	-1	known	missense	c.418	p.A140T	1.000	NULL	NULL	-	no_errors	TMEM11	HGNC	ENSG00000178307				60	0	0	54	4	6.89655
KCNJ12	0	genome.wustl.edu	37	17	21319358	21319358	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	21319358	21319358	C	T	SNP	KCNJ12	ENST00000331718	human	ensembl	74_37	+1	known	missense	c.704	p.P235L	0.999	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir2.2	pfam_K_chnl_inward-rec_Kir,pfam_K_chnl_inward-rec_Kir_N,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir2.2	-	no_errors	KCNJ12	HGNC	ENSG00000184185				61	0	0	48	6	11.1111
SMG6	0	genome.wustl.edu	37	17	2202208	2202208	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	2202208	2202208	C	T	SNP	SMG6	ENST00000263073	human	ensembl	74_37	-1	known	silent	c.1839	p.A613	1.000	NULL	pfam_EST1,smart_PIN_dom	-	no_errors	SMG6	HGNC	ENSG00000070366				223	0	0	172	14	7.52688
KSR1	0	genome.wustl.edu	37	17	25934953	25934953	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	25934953	25934953	C	T	SNP	KSR1	ENST00000319524	human	ensembl	74_37	+1	known	missense	c.2074	p.R692W	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	KSR1	HGNC	ENSG00000141068				15	0	0	9	5	35.7143
KSR1	0	genome.wustl.edu	37	17	25950388	25950388	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	25950388	25950388	C	T	SNP	KSR1	ENST00000578981	human	ensembl	74_37	+1	putative	missense	c.110	p.A37V	0.726	NULL	NULL	-	no_errors	KSR1	HGNC	ENSG00000141068				27	0	0	17	8	32
CLUH	0	genome.wustl.edu	37	17	2605316	2605316	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	2605316	2605316	G	A	SNP	CLUH	ENST00000435359	human	ensembl	74_37	-1	known	missense	c.397	p.R133C	1.000	NULL	superfamily_GSKIP_dom	-	no_errors	CLUH	HGNC	ENSG00000132361				38	0	0	25	3	10.7143
C17orf97	0	genome.wustl.edu	37	17	263122	263122	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	263122	263122	C	T	SNP	C17orf97	ENST00000360127	human	ensembl	74_37	+1	known	missense	c.488	p.A163V	0.002	NULL	NULL	-	no_errors	C17orf97	HGNC	ENSG00000187624				107	0	0	60	30	33.3333
C17orf97	0	genome.wustl.edu	37	17	263194	263194	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	263194	263194	G	A	SNP	C17orf97	ENST00000360127	human	ensembl	74_37	+1	known	missense	c.560	p.R187H	0.894	NULL	NULL	-	no_errors	C17orf97	HGNC	ENSG00000187624				77	0	0	59	23	28.0488
ALDOC	0	genome.wustl.edu	37	17	26900862	26900862	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	26900862	26900862	G	A	SNP	ALDOC	ENST00000226253	human	ensembl	74_37	-1	known	missense	c.890	p.A297V	1.000	pfam_Aldolase_I	pfam_Aldolase_I	-	no_errors	ALDOC	HGNC	ENSG00000109107				73	0	0	55	18	24.6575
SPAG5-AS1	0	genome.wustl.edu	37	17	26944355	26944355	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	26944355	26944355	C	T	SNP	SPAG5-AS1	ENST00000414744	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SPAG5-AS1	HGNC	ENSG00000227543				42	0	0	45	5	10
ERAL1	0	genome.wustl.edu	37	17	27187476	27187476	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	27187476	27187476	G	A	SNP	ERAL1	ENST00000254928	human	ensembl	74_37	+1	known	missense	c.1219	p.V407M	0.000	superfamily_KH_prok-type	pfam_GTP_binding_domain,pfam_MIRO-like,pfam_Dynamin_GTPase,pfam_AIG1,pfam_EF_GTP-bd_dom,pfam_Fe2_transport_prot_B_N,superfamily_P-loop_NTPase,superfamily_KH_prok-type,prints_GTP_binding_domain,tigrfam_Small_GTP-bd_dom	-	no_errors	ERAL1	HGNC	ENSG00000132591				92	0	0	53	29	35.3659
CPD	0	genome.wustl.edu	37	17	28754503	28754503	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	28754503	28754503	G	A	SNP	CPD	ENST00000225719	human	ensembl	74_37	+1	known	silent	c.1944	p.T648	0.820	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,superfamily_CarboxyPept-like_regulatory,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPD	HGNC	ENSG00000108582				128	0	0	99	34	25.5639
RAP1GAP2	0	genome.wustl.edu	37	17	2898752	2898752	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	2898752	2898752	G	A	SNP	RAP1GAP2	ENST00000254695	human	ensembl	74_37	+1	known	missense	c.1036	p.A346T	0.998	pfam_Rap_GAP_dom,pfscan_Rap_GAP_dom	pfam_Rap_GAP_dom,pfscan_Rap_GAP_dom	-	no_errors	RAP1GAP2	HGNC	ENSG00000132359				44	0	0	30	15	33.3333
EVI2A	0	genome.wustl.edu	37	17	29645508	29645508	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	29645508	29645508	C	T	SNP	EVI2A	ENST00000247270	human	ensembl	74_37	-1	known	missense	c.593	p.R198H	0.999	pfam_Ectropic_vir_integratn_site_2A,pirsf_Ectropic_vir_integratn_site_2A	pfam_Ectropic_vir_integratn_site_2A,pirsf_Ectropic_vir_integratn_site_2A	-	no_errors	EVI2A	HGNC	ENSG00000126860				59	0	0	45	11	19.6429
EVI2A	0	genome.wustl.edu	37	17	29645522	29645522	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	29645522	29645522	T	A	SNP	EVI2A	ENST00000247270	human	ensembl	74_37	-1	known	missense	c.579	p.K193N	0.991	pfam_Ectropic_vir_integratn_site_2A,pirsf_Ectropic_vir_integratn_site_2A	pfam_Ectropic_vir_integratn_site_2A,pirsf_Ectropic_vir_integratn_site_2A	-	no_errors	EVI2A	HGNC	ENSG00000126860				62	0	0	45	13	22.4138
OR1D5	0	genome.wustl.edu	37	17	2966556	2966556	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	2966556	2966556	C	T	SNP	OR1D5	ENST00000575751	human	ensembl	74_37	-1	known	missense	c.346	p.A116T	0.828	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1D5	HGNC	ENSG00000262628				31	0	0	19	14	42.4242
OR1G1	0	genome.wustl.edu	37	17	3030350	3030350	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	3030350	3030350	G	A	SNP	OR1G1	ENST00000328890	human	ensembl	74_37	-1	known	silent	c.496	p.L166	0.101	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1G1	HGNC	ENSG00000183024				160	0	0	97	41	29.7101
MYO1D	0	genome.wustl.edu	37	17	31087608	31087608	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	31087608	31087608	C	T	SNP	MYO1D	ENST00000318217	human	ensembl	74_37	-1	known	missense	c.1073	p.R358H	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO1D	HGNC	ENSG00000176658				96	0	0	84	5	5.61798
MYO1D	0	genome.wustl.edu	37	17	31087632	31087632	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	31087632	31087632	C	T	SNP	MYO1D	ENST00000318217	human	ensembl	74_37	-1	known	missense	c.1049	p.R350H	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO1D	HGNC	ENSG00000176658				95	0	0	73	22	23.1579
OR3A2	0	genome.wustl.edu	37	17	3181297	3181297	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	3181297	3181297	C	T	SNP	OR3A2	ENST00000408891	human	ensembl	74_37	-1	known	nonsense	c.933	p.W311*	0.003	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR3A2	HGNC	ENSG00000221882				99	0	0	55	21	27.6316
OR3A3	0	genome.wustl.edu	37	17	3324325	3324325	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	3324325	3324325	C	A	SNP	OR3A3	ENST00000291231	human	ensembl	74_37	+1	known	missense	c.464	p.A155D	0.077	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR3A3	HGNC	ENSG00000159961				132	0	0	83	30	26.5487
CCT6B	0	genome.wustl.edu	37	17	33266272	33266272	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	33266272	33266272	C	A	SNP	CCT6B	ENST00000314144	human	ensembl	74_37	-1	known	missense	c.1143	p.K381N	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1,tigrfam_Chap_CCT_zeta	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_zeta	-	no_errors	CCT6B	HGNC	ENSG00000132141				162	0	0	118	25	17.4825
LIG3	0	genome.wustl.edu	37	17	33326437	33326437	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	33326437	33326437	A	G	SNP	LIG3	ENST00000378526	human	ensembl	74_37	+1	known	missense	c.2225	p.Q742R	1.000	pfam_DNA_ligase_ATP-dep_C,superfamily_NA-bd_OB-fold,tigrfam_DNA_ligase_ATP-dep	pfam_DNA_ligase_ATP-dep_cent,pfam_DNA_ligase_ATP-dep_N,pfam_Znf_PARP,pfam_DNA_ligase_ATP-dep_C,superfamily_NA-bd_OB-fold,superfamily_BRCT_dom,superfamily_DNA_ligase_ATP-dep_N,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_Znf_PARP,pfscan_DNA_ligase_ATP-dep_cent,tigrfam_DNA_ligase_ATP-dep	-	no_errors	LIG3	HGNC	ENSG00000005156				33	0	0	33	5	13.1579
OR1E2	0	genome.wustl.edu	37	17	3336709	3336709	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	3336709	3336709	C	T	SNP	OR1E2	ENST00000248384	human	ensembl	74_37	-1	known	missense	c.427	p.A143T	0.008	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1E2	HGNC	ENSG00000127780				67	0	0	33	15	31.25
SLFN5	0	genome.wustl.edu	37	17	33586592	33586592	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	33586592	33586592	G	A	SNP	SLFN5	ENST00000299977	human	ensembl	74_37	+1	known	missense	c.883	p.A295T	0.353	pfam_ATPase_AAA-4	pfam_ATPase_AAA-4,pfam_DUF2075,superfamily_P-loop_NTPase	-	no_errors	SLFN5	HGNC	ENSG00000166750				155	0	0	124	17	12.0567
SLFN5	0	genome.wustl.edu	37	17	33591298	33591298	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	33591298	33591298	G	A	SNP	SLFN5	ENST00000299977	human	ensembl	74_37	+1	known	missense	c.1235	p.R412H	0.018	NULL	pfam_ATPase_AAA-4,pfam_DUF2075,superfamily_P-loop_NTPase	-	no_errors	SLFN5	HGNC	ENSG00000166750				124	0	0	82	21	20.3883
RASL10B	0	genome.wustl.edu	37	17	34068171	34068171	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	34068171	34068171	C	T	SNP	RASL10B	ENST00000268864	human	ensembl	74_37	+1	known	silent	c.459	p.C153	1.000	pfam_Small_GTPase,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type	pfam_Small_GTPase,pfam_MIRO-like,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,prints_Small_GTPase	-	no_errors	RASL10B	HGNC	ENSG00000141150				40	0	0	22	13	37.1429
MMP28	0	genome.wustl.edu	37	17	34106032	34106032	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	34106032	34106032	C	T	SNP	MMP28	ENST00000587639	human	ensembl	74_37	-1	known	missense	c.239	p.R80H	0.001	pfam_Peptidoglycan-bd-like,superfamily_Peptidoglycan-bd-like	pfam_Peptidoglycan-bd-like,superfamily_Peptidoglycan-bd-like	-	no_errors	MMP28	HGNC	ENSG00000129270				45	0	0	30	13	30.2326
TRPV1	0	genome.wustl.edu	37	17	3476959	3476959	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	3476959	3476959	C	T	SNP	TRPV1	ENST00000399756	human	ensembl	74_37	-1	known	missense	c.2071	p.A691T	0.921	tigrfam_TRP_channel	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV1-4_channel,tigrfam_TRP_channel	-	no_errors	TRPV1	HGNC	ENSG00000196689				45	0	0	39	6	13.3333
TRPV1	0	genome.wustl.edu	37	17	3489183	3489183	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	3489183	3489183	C	T	SNP	TRPV1	ENST00000399756	human	ensembl	74_37	-1	known	missense	c.1262	p.R421Q	0.991	prints_TRPV1-4_channel,tigrfam_TRP_channel	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV1-4_channel,tigrfam_TRP_channel	-	no_errors	TRPV1	HGNC	ENSG00000196689				48	0	0	22	13	37.1429
ACACA	0	genome.wustl.edu	37	17	35478337	35478337	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	35478337	35478337	G	A	SNP	ACACA	ENST00000353139	human	ensembl	74_37	-1	known	missense	c.6214	p.R2072W	1.000	pfam_Carboxyl_trans,pfscan_COA_CT_C	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_carboxylate-amine,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACA	HGNC	ENSG00000132142				130	0	0	97	7	6.73077
ACACA	0	genome.wustl.edu	37	17	35603887	35603887	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	35603887	35603887	C	T	SNP	ACACA	ENST00000353139	human	ensembl	74_37	-1	known	missense	c.2315	p.R772H	1.000	NULL	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_carboxylate-amine,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACA	HGNC	ENSG00000132142				126	0	0	106	10	8.62069
HNF1B	0	genome.wustl.edu	37	17	36099531	36099531	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	36099531	36099531	C	T	SNP	HNF1B	ENST00000225893	human	ensembl	74_37	-1	known	silent	c.444	p.S148	0.006	pfam_HNF-1_N,superfamily_Lambda_DNA-bd_dom	pfam_HNF1b_C,pfam_HNF-1_N,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_HNF1_dimer_dom,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	HNF1B	HGNC	ENSG00000108753				66	0	0	50	5	9.09091
ITGAE	0	genome.wustl.edu	37	17	3665218	3665218	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	3665218	3665218	G	A	SNP	ITGAE	ENST00000263087	human	ensembl	74_37	-1	known	silent	c.306	p.H102	0.095	NULL	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_Integrin_alpha_C_CS,smart_VWF_A,smart_Int_alpha_beta-p,prints_Integrin_alpha,pfscan_VWF_A	-	no_errors	ITGAE	HGNC	ENSG00000083457				28	0	0	23	8	25.8065
MED1	0	genome.wustl.edu	37	17	37565282	37565282	+	Silent	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	37565282	37565282	A	G	SNP	MED1	ENST00000300651	human	ensembl	74_37	-1	known	silent	c.3192	p.T1064	0.980	NULL	pfam_Mediator_Med1_met/fun	-	no_errors	MED1	HGNC	ENSG00000125686				114	0	0	113	6	5.04202
CAMKK1	0	genome.wustl.edu	37	17	3773157	3773157	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	3773157	3773157	C	T	SNP	CAMKK1	ENST00000381771	human	ensembl	74_37	-1	known	missense	c.1264	p.D422N	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CAMKK1	HGNC	ENSG00000004660				76	0	0	43	18	29.5082
IKZF3	0	genome.wustl.edu	37	17	37948990	37948990	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	37948990	37948990	G	A	SNP	IKZF3	ENST00000346872	human	ensembl	74_37	-1	known	silent	c.360	p.C120	0.550	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	IKZF3	HGNC	ENSG00000161405				103	0	0	87	32	26.8908
CDC6	0	genome.wustl.edu	37	17	38450699	38450699	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	38450699	38450699	T	C	SNP	CDC6	ENST00000209728	human	ensembl	74_37	+1	known	missense	c.1027	p.F343L	1.000	superfamily_P-loop_NTPase,pirsf_Cell_div_Cdc6/18	pfam_ATPase_AAA_core,pfam_Cdc6_C_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pirsf_Cell_div_Cdc6/18	-	no_errors	CDC6	HGNC	ENSG00000094804				99	0	0	71	9	11.25
TOP2A	0	genome.wustl.edu	37	17	38557134	38557134	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	38557134	38557134	G	A	SNP	TOP2A	ENST00000423485	human	ensembl	74_37	-1	known	missense	c.2632	p.R878C	0.993	pfam_Topo_IIA_A/C,superfamily_Topo_IIA_like_dom,smart_Topo_IIA_A/C	pfam_Topo_IIA_A/C,pfam_Topo_IIA_bsu_dom2,pfam_DTHCT,pfam_HATPase_ATP-bd,superfamily_Topo_IIA_like_dom,superfamily_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,smart_Topo_IIA,smart_Topo_IIA_A/C,prints_TopoII_euk,prints_Topo_IIA,prints_Transcrpt_fac_NFYB/HAP3	-	no_errors	TOP2A	HGNC	ENSG00000131747				304	0	0	195	66	25.2874
KRT222	0	genome.wustl.edu	37	17	38818220	38818220	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	38818220	38818220	G	A	SNP	KRT222	ENST00000394052	human	ensembl	74_37	-1	known	missense	c.173	p.A58V	1.000	pfam_IF	pfam_IF,prints_Keratin_I	-	no_errors	KRT222	HGNC	ENSG00000213424				171	0	0	160	12	6.97674
KRT27	0	genome.wustl.edu	37	17	38936056	38936056	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	38936056	38936056	C	A	SNP	KRT27	ENST00000301656	human	ensembl	74_37	-1	known	missense	c.742	p.A248S	0.998	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT27	HGNC	ENSG00000171446				54	0	0	39	14	26.4151
KRTAP1-3	0	genome.wustl.edu	37	17	39191019	39191019	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	39191019	39191019	T	C	SNP	KRTAP1-3	ENST00000344363	human	ensembl	74_37	-1	known	missense	c.55	p.T19A	0.927	pfam_Keratin-assoc	pfam_Keratin-assoc	-	no_errors	KRTAP1-3	HGNC	ENSG00000221880				41	0	0	28	5	15.1515
KRTAP4-8	0	genome.wustl.edu	37	17	39254140	39254140	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	39254140	39254140	C	T	SNP	KRTAP4-8	ENST00000333822	human	ensembl	74_37	-1	known	missense	c.197	p.R66H	0.000	pfam_Keratin-assoc	pfam_Keratin-assoc	-	no_errors	KRTAP4-8	HGNC	ENSG00000204880				37	0	0	19	13	40.625
KRTAP4-6	0	genome.wustl.edu	37	17	39296288	39296288	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	39296288	39296288	C	T	SNP	KRTAP4-6	ENST00000345847	human	ensembl	74_37	-1	known	missense	c.452	p.R151H	0.004	NULL	pfam_Keratin-assoc	-	no_errors	KRTAP4-6	HGNC	ENSG00000198090				31	0	0	25	6	19.3548
KRT33A	0	genome.wustl.edu	37	17	39502732	39502732	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	39502732	39502732	C	T	SNP	KRT33A	ENST00000007735	human	ensembl	74_37	-1	known	silent	c.1065	p.T355	0.915	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT33A	HGNC	ENSG00000006059				103	0	0	77	10	11.4943
KRT36	0	genome.wustl.edu	37	17	39645870	39645870	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	39645870	39645870	A	G	SNP	KRT36	ENST00000328119	human	ensembl	74_37	-1	known	missense	c.247	p.W83R	0.723	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT36	HGNC	ENSG00000126337				72	0	0	52	5	8.77193
KRT13	0	genome.wustl.edu	37	17	39658842	39658842	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	39658842	39658842	G	A	SNP	KRT13	ENST00000246635	human	ensembl	74_37	-1	known	missense	c.1028	p.A343V	0.747	pfam_IF,prints_Keratin_I	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT13	HGNC	ENSG00000171401				74	0	0	48	24	33.3333
KRT13	0	genome.wustl.edu	37	17	39661466	39661466	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	39661466	39661466	C	T	SNP	KRT13	ENST00000246635	human	ensembl	74_37	-1	known	missense	c.337	p.D113N	1.000	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT13	HGNC	ENSG00000171401				109	0	0	83	20	19.4175
KAT2A	0	genome.wustl.edu	37	17	40265766	40265766	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	40265766	40265766	G	A	SNP	KAT2A	ENST00000225916	human	ensembl	74_37	-1	known	silent	c.2415	p.R805	0.139	pirsf_Hist_acetylase_PCAF,pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	pirsf_Hist_acetylase_PCAF,pfam_PCAF_N,pfam_Bromodomain,pfam_GNAT_dom,superfamily_Bromodomain,superfamily_Acyl_CoA_acyltransferase,smart_Bromodomain,pfscan_Bromodomain,pfscan_GNAT_dom,prints_Bromodomain	-	no_errors	KAT2A	HGNC	ENSG00000108773				50	0	0	30	11	26.8293
RAB5C	0	genome.wustl.edu	37	17	40280741	40280741	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	40280741	40280741	G	A	SNP	RAB5C	ENST00000346213	human	ensembl	74_37	-1	known	missense	c.244	p.R82W	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB5C	HGNC	ENSG00000108774				54	0	0	39	10	20.4082
GHDC	0	genome.wustl.edu	37	17	40344954	40344954	+	Silent	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	40344954	40344954	T	C	SNP	GHDC	ENST00000301671	human	ensembl	74_37	-1	known	silent	c.357	p.S119	0.000	NULL	pfam_GH3	-	no_errors	GHDC	HGNC	ENSG00000167925				131	0	0	89	5	5.31915
STAT3	0	genome.wustl.edu	37	17	40476753	40476753	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	40476753	40476753	T	C	SNP	STAT3	ENST00000264657	human	ensembl	74_37	-1	known	missense	c.1576	p.T526A	1.000	pfam_STAT_TF_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,pfscan_SH2	-	no_errors	STAT3	HGNC	ENSG00000168610				37	0	0	20	10	33.3333
STAT3	0	genome.wustl.edu	37	17	40489528	40489528	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	40489528	40489528	G	T	SNP	STAT3	ENST00000264657	human	ensembl	74_37	-1	known	missense	c.722	p.A241D	0.999	pfam_STAT_TF_alpha,superfamily_STAT_TF_coiled-coil	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,pfscan_SH2	-	no_errors	STAT3	HGNC	ENSG00000168610				88	0	0	49	27	35.5263
CNTNAP1	0	genome.wustl.edu	37	17	40845456	40845456	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	40845456	40845456	G	A	SNP	CNTNAP1	ENST00000264638	human	ensembl	74_37	+1	known	missense	c.2894	p.R965Q	0.000	pfscan_EG-like_dom	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP1	HGNC	ENSG00000108797				81	0	0	41	18	30.5085
WNK4	0	genome.wustl.edu	37	17	40947525	40947525	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	40947525	40947525	C	T	SNP	WNK4	ENST00000246914	human	ensembl	74_37	+1	known	missense	c.3008	p.A1003V	0.522	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK4	HGNC	ENSG00000126562				51	0	0	36	16	30.7692
CNTD1	0	genome.wustl.edu	37	17	40958800	40958800	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	40958800	40958800	C	T	SNP	CNTD1	ENST00000588408	human	ensembl	74_37	+1	known	missense	c.689	p.A230V	0.712	NULL	pfam_Cyclin_N,superfamily_Cyclin-like	-	no_errors	CNTD1	HGNC	ENSG00000176563				83	0	0	82	11	11.828
MPP3	0	genome.wustl.edu	37	17	41891392	41891392	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	41891392	41891392	G	A	SNP	MPP3	ENST00000398389	human	ensembl	74_37	-1	known	silent	c.1242	p.G414	0.141	pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,smart_GK/Ca_channel_bsu,pfscan_Guanylate_kin-like	pfam_GK/Ca_channel_bsu,pfam_L27_C,pfam_PDZ,pfam_SH3_2,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	MPP3	HGNC	ENSG00000161647				137	0	0	79	34	30.0885
C17orf53	0	genome.wustl.edu	37	17	42232005	42232005	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	42232005	42232005	G	A	SNP	C17orf53	ENST00000319977	human	ensembl	74_37	+1	known	missense	c.1534	p.A512T	1.000	NULL	NULL	-	no_errors	C17orf53	HGNC	ENSG00000125319				93	0	0	54	6	10
SLC4A1	0	genome.wustl.edu	37	17	42335832	42335832	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	42335832	42335832	G	A	SNP	SLC4A1	ENST00000262418	human	ensembl	74_37	-1	known	missense	c.1036	p.R346C	0.579	superfamily_PTrfase/Anion_transptr,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange,prints_Anion_exchange_1,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A1	HGNC	ENSG00000004939				120	0	0	60	21	25.9259
GPATCH8	0	genome.wustl.edu	37	17	42476588	42476588	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	42476588	42476588	G	A	SNP	GPATCH8	ENST00000591680	human	ensembl	74_37	-1	known	missense	c.2857	p.R953C	1.000	NULL	pfam_G_patch_dom,pfam_Znf_C2H2_jaz,smart_G_patch_dom,pfscan_Znf_C2H2,pfscan_G_patch_dom	-	no_errors	GPATCH8	HGNC	ENSG00000186566				74	0	0	34	12	26.087
GPATCH8	0	genome.wustl.edu	37	17	42476724	42476724	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	42476724	42476724	G	A	SNP	GPATCH8	ENST00000591680	human	ensembl	74_37	-1	known	silent	c.2721	p.R907	0.334	NULL	pfam_G_patch_dom,pfam_Znf_C2H2_jaz,smart_G_patch_dom,pfscan_Znf_C2H2,pfscan_G_patch_dom	-	no_errors	GPATCH8	HGNC	ENSG00000186566				73	0	0	38	12	24
GPATCH8	0	genome.wustl.edu	37	17	42580708	42580708	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	42580708	42580708	C	T	SNP	GPATCH8	ENST00000591680	human	ensembl	74_37	-1	known	missense	c.31	p.D11N	1.000	NULL	pfam_G_patch_dom,pfam_Znf_C2H2_jaz,smart_G_patch_dom,pfscan_Znf_C2H2,pfscan_G_patch_dom	-	no_errors	GPATCH8	HGNC	ENSG00000186566				10	0	0	7	7	50
EFTUD2	0	genome.wustl.edu	37	17	42956967	42956967	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	42956967	42956967	C	T	SNP	EFTUD2	ENST00000426333	human	ensembl	74_37	-1	known	missense	c.659	p.R220H	1.000	pfam_EF_GTP-bd_dom,pfam_MIRO-like,superfamily_P-loop_NTPase,prints_EF_GTP-bd_dom,tigrfam_Small_GTP-bd_dom	pfam_EF_GTP-bd_dom,pfam_Transl_elong_EFG/EF2_IV,pfam_EFG_V,pfam_Transl_elong_EFTu/EF1A_2,pfam_MIRO-like,superfamily_P-loop_NTPase,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Transl_B-barrel,superfamily_EFG_III-V,smart_Transl_elong_EFG/EF2_IV,smart_EFG_V,prints_EF_GTP-bd_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	EFTUD2	HGNC	ENSG00000108883				102	0	0	61	23	27.381
FMNL1	0	genome.wustl.edu	37	17	43315992	43315992	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	43315992	43315992	A	G	SNP	FMNL1	ENST00000328118	human	ensembl	74_37	+1	known	missense	c.956	p.N319S	1.000	pfam_FH3_dom,superfamily_ARM-type_fold	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FMNL1	HGNC	ENSG00000184922				51	0	0	50	13	20.6349
MAP3K14	0	genome.wustl.edu	37	17	43351908	43351908	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	43351908	43351908	G	A	SNP	MAP3K14	ENST00000344686	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.982	-	-	-	no_errors	MAP3K14	HGNC	ENSG00000006062				41	0	0	27	4	12.9032
KANSL1	0	genome.wustl.edu	37	17	44115975	44115975	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	44115975	44115975	G	A	SNP	KANSL1	ENST00000262419	human	ensembl	74_37	-1	known	nonsense	c.2470	p.R824*	1.000	NULL	NULL	-	no_errors	KANSL1	HGNC	ENSG00000120071				64	0	0	26	15	36.5854
WNT3	0	genome.wustl.edu	37	17	44846086	44846086	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	44846086	44846086	G	A	SNP	WNT3	ENST00000225512	human	ensembl	74_37	-1	known	missense	c.668	p.A223V	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt3	-	no_errors	WNT3	HGNC	ENSG00000108379				68	0	0	50	11	18.0328
WNT3	0	genome.wustl.edu	37	17	44851186	44851186	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	44851186	44851186	C	T	SNP	WNT3	ENST00000225512	human	ensembl	74_37	-1	known	missense	c.170	p.R57H	0.998	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt3	-	no_errors	WNT3	HGNC	ENSG00000108379				30	0	0	14	9	39.1304
ITGB3	0	genome.wustl.edu	37	17	45368350	45368350	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	45368350	45368350	C	T	SNP	ITGB3	ENST00000559488	human	ensembl	74_37	+1	known	missense	c.1156	p.R386C	0.993	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,smart_Integrin_bsu_N	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_cyt_dom,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB3	HGNC	ENSG00000259207				119	1	0.833333	68	26	27.6596
SCRN2	0	genome.wustl.edu	37	17	45915694	45915694	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	45915694	45915694	C	T	SNP	SCRN2	ENST00000290216	human	ensembl	74_37	-1	known	missense	c.1061	p.R354H	1.000	NULL	pfam_Peptidase_C69,pfam_Pept_C45_AAT	-	no_errors	SCRN2	HGNC	ENSG00000141295				80	0	0	33	27	45
HOXB1	0	genome.wustl.edu	37	17	46607897	46607897	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	46607897	46607897	A	G	SNP	HOXB1	ENST00000239174	human	ensembl	74_37	-1	known	missense	c.370	p.S124P	0.398	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXB1	HGNC	ENSG00000120094				47	0	0	32	7	17.9487
PLD2	0	genome.wustl.edu	37	17	4713066	4713066	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	4713066	4713066	G	A	SNP	PLD2	ENST00000263088	human	ensembl	74_37	+1	known	missense	c.695	p.R232H	1.000	smart_Pleckstrin_homology,pirsf_PLipase_D_euk	pfam_Phox,pfam_PLipase_D/transphosphatidylase,superfamily_Phox,smart_Phox,smart_Pleckstrin_homology,smart_PLipase_D/transphosphatidylase,pirsf_PLipase_D_euk,pfscan_Phox,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD2	HGNC	ENSG00000129219				115	0	0	62	24	27.907
PLD2	0	genome.wustl.edu	37	17	4718853	4718853	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	4718853	4718853	C	T	SNP	PLD2	ENST00000263088	human	ensembl	74_37	+1	known	missense	c.1256	p.A419V	0.753	pirsf_PLipase_D_euk	pfam_Phox,pfam_PLipase_D/transphosphatidylase,superfamily_Phox,smart_Phox,smart_Pleckstrin_homology,smart_PLipase_D/transphosphatidylase,pirsf_PLipase_D_euk,pfscan_Phox,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD2	HGNC	ENSG00000129219				183	0	0	124	47	27.4854
B4GALNT2	0	genome.wustl.edu	37	17	47247084	47247084	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	47247084	47247084	C	T	SNP	B4GALNT2	ENST00000300404	human	ensembl	74_37	+1	known	silent	c.1695	p.A565	0.000	pirsf_GM2_synthase	pfam_Glyco_trans_2,pirsf_GM2_synthase	-	no_errors	B4GALNT2	HGNC	ENSG00000167080				54	0	0	41	4	8.88889
ABI3	0	genome.wustl.edu	37	17	47295191	47295191	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	47295191	47295191	G	A	SNP	ABI3	ENST00000225941	human	ensembl	74_37	+1	known	missense	c.376	p.A126T	0.994	pfam_Abl-interactor_HHR_dom	pfam_Abl-interactor_HHR_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	ABI3	HGNC	ENSG00000108798				48	0	0	25	11	30.5556
PHB	0	genome.wustl.edu	37	17	47486737	47486737	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	47486737	47486737	G	A	SNP	PHB	ENST00000300408	human	ensembl	74_37	-1	known	missense	c.349	p.R117C	1.000	pfam_Band_7,smart_Band_7,prints_Prohibitin	pfam_Band_7,smart_Band_7,prints_Prohibitin	-	no_errors	PHB	HGNC	ENSG00000167085				55	0	0	20	14	41.1765
NGFR	0	genome.wustl.edu	37	17	47583719	47583719	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	47583719	47583719	C	T	SNP	NGFR	ENST00000172229	human	ensembl	74_37	+1	known	silent	c.267	p.C89	1.000	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_16	pfam_TNFR/NGFR_Cys_rich_reg,pfam_Death_domain,superfamily_DEATH-like_dom,smart_TNFR/NGFR_Cys_rich_reg,smart_Death_domain,pfscan_Death_domain,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_16	-	no_errors	NGFR	HGNC	ENSG00000064300				28	0	0	9	6	40
KAT7	0	genome.wustl.edu	37	17	47898713	47898713	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	47898713	47898713	G	A	SNP	KAT7	ENST00000259021	human	ensembl	74_37	+1	known	nonsense	c.1170	p.W390*	1.000	pfam_MOZ_SAS,superfamily_Acyl_CoA_acyltransferase	pfam_MOZ_SAS,pfam_Znf_C2HC,superfamily_Acyl_CoA_acyltransferase	-	no_errors	KAT7	HGNC	ENSG00000136504				74	0	0	38	11	22.449
ITGA3	0	genome.wustl.edu	37	17	48145498	48145498	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	48145498	48145498	C	T	SNP	ITGA3	ENST00000320031	human	ensembl	74_37	+1	known	nonsense	c.493	p.R165*	1.000	NULL	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA3	HGNC	ENSG00000005884				109	0	0	83	9	9.78261
PPP1R9B	0	genome.wustl.edu	37	17	48212980	48212980	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	48212980	48212980	G	A	SNP	PPP1R9B	ENST00000316878	human	ensembl	74_37	-1	known	missense	c.2332	p.R778C	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PPP1R9B	HGNC	ENSG00000108819				18	0	0	9	6	40
COL1A1	0	genome.wustl.edu	37	17	48274561	48274561	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	48274561	48274561	G	A	SNP	COL1A1	ENST00000225964	human	ensembl	74_37	-1	known	missense	c.730	p.R244C	1.000	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL1A1	HGNC	ENSG00000108821				59	0	0	32	15	31.9149
XYLT2	0	genome.wustl.edu	37	17	48433538	48433538	+	Silent	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	48433538	48433538	C	A	SNP	XYLT2	ENST00000017003	human	ensembl	74_37	+1	known	silent	c.1398	p.G466	1.000	pfam_Glyco_trans_14	pfam_XylT,pfam_Glyco_trans_14	-	no_errors	XYLT2	HGNC	ENSG00000015532				64	0	0	47	8	14.5455
EPN3	0	genome.wustl.edu	37	17	48614339	48614339	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	48614339	48614339	G	A	SNP	EPN3	ENST00000537145	human	ensembl	74_37	+1	known	missense	c.587	p.R196Q	1.000	superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N	pfam_Epsin_dom_N,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N,pfscan_Ubiquitin-int_motif	-	no_errors	EPN3	HGNC	ENSG00000049283				30	0	0	16	5	23.8095
ABCC3	0	genome.wustl.edu	37	17	48755223	48755223	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	48755223	48755223	G	A	SNP	ABCC3	ENST00000285238	human	ensembl	74_37	+1	known	missense	c.3497	p.R1166H	0.687	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC3	HGNC	ENSG00000108846				172	0	0	130	9	6.47482
SPAG9	0	genome.wustl.edu	37	17	49091605	49091605	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	49091605	49091605	C	A	SNP	SPAG9	ENST00000262013	human	ensembl	74_37	-1	known	missense	c.1201	p.A401S	1.000	NULL	pfam_JNK/Rab-associated_protein-1_N,superfamily_WD40_repeat_dom	-	no_errors	SPAG9	HGNC	ENSG00000008294				75	0	0	103	6	5.50459
SPAG9	0	genome.wustl.edu	37	17	49119004	49119004	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	49119004	49119004	C	T	SNP	SPAG9	ENST00000262013	human	ensembl	74_37	-1	known	missense	c.599	p.R200H	0.989	NULL	pfam_JNK/Rab-associated_protein-1_N,superfamily_WD40_repeat_dom	-	no_errors	SPAG9	HGNC	ENSG00000008294				127	0	0	86	31	26.4957
KIF1C	0	genome.wustl.edu	37	17	4917019	4917019	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	4917019	4917019	C	T	SNP	KIF1C	ENST00000320785	human	ensembl	74_37	+1	known	silent	c.1563	p.G521	0.002	superfamily_SMAD_FHA_domain	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1C	HGNC	ENSG00000129250				35	0	0	28	5	15.1515
USP6	0	genome.wustl.edu	37	17	5041523	5041523	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	5041523	5041523	T	G	SNP	USP6	ENST00000250066	human	ensembl	74_37	+1	known	missense	c.1033	p.S345A	1.000	superfamily_Rab-GTPase-TBC_dom	pfam_Peptidase_C19/C67,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom,pfscan_Peptidase_C19/C67	-	no_errors	USP6	HGNC	ENSG00000129204				133	0	0	111	9	7.5
KIF2B	0	genome.wustl.edu	37	17	51901021	51901021	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	51901021	51901021	G	A	SNP	KIF2B	ENST00000268919	human	ensembl	74_37	+1	known	silent	c.627	p.P209	0.000	superfamily_P-loop_NTPase	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF2B	HGNC	ENSG00000141200				56	0	0	41	15	26.7857
RABEP1	0	genome.wustl.edu	37	17	5264866	5264866	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	5264866	5264866	G	T	SNP	RABEP1	ENST00000262477	human	ensembl	74_37	+1	known	missense	c.1459	p.A487S	0.998	pfam_Rabaptin_coiled-coil,prints_Rabaptin	pfam_Rabaptin_coiled-coil,pfam_Rabaptin_Rab5-bd_dom,prints_Rabaptin	-	no_errors	RABEP1	HGNC	ENSG00000029725				95	0	0	68	24	26.087
VPS53	0	genome.wustl.edu	37	17	526892	526892	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	526892	526892	G	A	SNP	VPS53	ENST00000437048	human	ensembl	74_37	-1	known	missense	c.997	p.R333C	1.000	pfam_Vps53_N	pfam_Vps53_N,pfam_Vacuolar_sorting-assoc_54	-	no_errors	VPS53	HGNC	ENSG00000141252				66	0	0	40	12	23.0769
RABEP1	0	genome.wustl.edu	37	17	5280477	5280477	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	5280477	5280477	G	A	SNP	RABEP1	ENST00000262477	human	ensembl	74_37	+1	known	missense	c.2092	p.V698I	0.949	pfam_Rabaptin_Rab5-bd_dom	pfam_Rabaptin_coiled-coil,pfam_Rabaptin_Rab5-bd_dom,prints_Rabaptin	-	no_errors	RABEP1	HGNC	ENSG00000029725				156	0	0	121	56	31.6384
NUP88	0	genome.wustl.edu	37	17	5312224	5312224	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	5312224	5312224	G	A	SNP	NUP88	ENST00000573584	human	ensembl	74_37	-1	known	missense	c.686	p.A229V	0.985	pfam_Nucleoporin_Nup88	pfam_Nucleoporin_Nup88	-	no_errors	NUP88	HGNC	ENSG00000108559				56	0	0	41	14	25.4545
DHX33	0	genome.wustl.edu	37	17	5365851	5365851	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	5365851	5365851	G	A	SNP	DHX33	ENST00000225296	human	ensembl	74_37	-1	known	missense	c.466	p.R156C	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX33	HGNC	ENSG00000005100				126	0	0	83	7	7.77778
TMEM100	0	genome.wustl.edu	37	17	53798230	53798230	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	53798230	53798230	C	T	SNP	TMEM100	ENST00000424486	human	ensembl	74_37	-1	known	missense	c.202	p.G68S	0.998	NULL	NULL	-	no_errors	TMEM100	HGNC	ENSG00000166292				128	0	0	72	33	31.4286
NLRP1	0	genome.wustl.edu	37	17	5436264	5436264	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	5436264	5436264	G	A	SNP	NLRP1	ENST00000572272	human	ensembl	74_37	-1	known	silent	c.3174	p.C1058	0.000	NULL	pfam_CARD,pfam_DAPIN,pfam_Leu-rich_rpt,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_CARD,pfscan_DAPIN,prints_Disease_R	-	no_errors	NLRP1	HGNC	ENSG00000091592				28	0	0	29	6	17.1429
DGKE	0	genome.wustl.edu	37	17	54925404	54925404	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	54925404	54925404	C	T	SNP	DGKE	ENST00000284061	human	ensembl	74_37	+1	known	missense	c.866	p.A289V	1.000	pfam_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kinase_cat_dom	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKE	HGNC	ENSG00000153933				61	0	0	58	4	6.45161
TRIM25	0	genome.wustl.edu	37	17	54976496	54976496	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	54976496	54976496	C	T	SNP	TRIM25	ENST00000316881	human	ensembl	74_37	-1	known	missense	c.1133	p.R378H	0.000	NULL	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM25	HGNC	ENSG00000121060				66	0	0	45	13	22.4138
LPO	0	genome.wustl.edu	37	17	56326511	56326511	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	56326511	56326511	G	A	SNP	LPO	ENST00000262290	human	ensembl	74_37	+1	known	missense	c.416	p.R139H	1.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	LPO	HGNC	ENSG00000167419				66	0	0	32	19	37.2549
PPM1E	0	genome.wustl.edu	37	17	57058136	57058136	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	57058136	57058136	G	A	SNP	PPM1E	ENST00000308249	human	ensembl	74_37	+1	known	missense	c.2012	p.R671H	0.457	NULL	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	-	no_errors	PPM1E	HGNC	ENSG00000175175				208	0	0	175	58	24.8927
CLTC	0	genome.wustl.edu	37	17	57725723	57725723	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	57725723	57725723	G	A	SNP	CLTC	ENST00000269122	human	ensembl	74_37	+1	known	silent	c.642	p.T214	0.023	pfam_Clathrin_H-chain_propeller_rpt,superfamily_Clathrin_H-chain_propeller_N,pirsf_Clathrin_heavy_chain	pfam_Clathrin_H-chain/VPS_repeat,pfam_Clathrin_H-chain_propeller_rpt,pfam_Clathrin_H-chain_linker_core,superfamily_Clathrin_H-chain_propeller_N,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_Clathrin_heavy_chain	-	no_errors	CLTC	HGNC	ENSG00000141367				151	0	0	99	45	31.25
USP32	0	genome.wustl.edu	37	17	58365944	58365944	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	58365944	58365944	T	C	SNP	USP32	ENST00000300896	human	ensembl	74_37	-1	known	missense	c.511	p.T171A	1.000	NULL	pfam_Peptidase_C19/C67,pfam_Pept_C19_DUSP,smart_EF_hand_dom,smart_Pept_C19_DUSP,pfscan_EF_hand_dom,pfscan_Peptidase_C19/C67,prints_Recoverin	-	no_errors	USP32	HGNC	ENSG00000170832				159	0	0	90	28	23.7288
PPM1D	0	genome.wustl.edu	37	17	58740851	58740851	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	58740851	58740851	G	A	SNP	PPM1D	ENST00000305921	human	ensembl	74_37	+1	known	missense	c.1756	p.G586S	1.000	NULL	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	-	no_errors	PPM1D	HGNC	ENSG00000170836				119	0	0	85	7	7.6087
ENSG00000267449	0	genome.wustl.edu	37	17	59147236	59147236	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	59147236	59147236	C	T	SNP	ENSG00000267449	ENST00000593107	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-264B14.2	Clone_based_vega_gene	ENSG00000267449				64	0	0	36	14	28
BCAS3	0	genome.wustl.edu	37	17	59155837	59155837	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	59155837	59155837	G	A	SNP	BCAS3	ENST00000390652	human	ensembl	74_37	+1	known	silent	c.2319	p.T773	1.000	NULL	pfam_BCAS3,pfam_WD40_repeat	-	no_errors	BCAS3	HGNC	ENSG00000141376				50	0	0	46	6	11.5385
INTS2	0	genome.wustl.edu	37	17	59971251	59971251	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	59971251	59971251	C	T	SNP	INTS2	ENST00000444766	human	ensembl	74_37	-1	known	missense	c.1597	p.A533T	1.000	NULL	NULL	-	no_errors	INTS2	HGNC	ENSG00000108506				17	0	0	11	5	31.25
WSCD1	0	genome.wustl.edu	37	17	6023723	6023723	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	6023723	6023723	C	T	SNP	WSCD1	ENST00000317744	human	ensembl	74_37	+1	known	silent	c.1470	p.Y490	0.935	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_WSC_carb-bd,pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd	-	no_errors	WSCD1	HGNC	ENSG00000179314				95	0	0	63	24	27.5862
TLK2	0	genome.wustl.edu	37	17	60673966	60673966	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	60673966	60673966	G	A	SNP	TLK2	ENST00000326270	human	ensembl	74_37	+1	known	missense	c.1547	p.R516Q	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TLK2	HGNC	ENSG00000146872				170	0	0	129	28	17.8344
MARCH10	0	genome.wustl.edu	37	17	60879031	60879031	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	60879031	60879031	C	T	SNP	MARCH10	ENST00000311269	human	ensembl	74_37	-1	known	silent	c.66	p.Q22	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH	-	no_errors	MARCH10	HGNC	ENSG00000173838				148	0	0	90	23	20.354
ACE	0	genome.wustl.edu	37	17	61559950	61559950	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	61559950	61559950	C	T	SNP	ACE	ENST00000290866	human	ensembl	74_37	+1	known	silent	c.1242	p.P414	0.621	pfam_Peptidase_M2	pfam_Peptidase_M2,prints_Peptidase_M2	-	no_errors	ACE	HGNC	ENSG00000159640				66	0	0	58	14	19.4444
ACE	0	genome.wustl.edu	37	17	61571353	61571353	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	61571353	61571353	C	T	SNP	ACE	ENST00000290866	human	ensembl	74_37	+1	known	silent	c.3207	p.V1069	0.299	pfam_Peptidase_M2,prints_Peptidase_M2	pfam_Peptidase_M2,prints_Peptidase_M2	-	no_errors	ACE	HGNC	ENSG00000159640				53	0	0	44	16	26.6667
KCNH6	0	genome.wustl.edu	37	17	61611628	61611628	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	61611628	61611628	G	A	SNP	KCNH6	ENST00000583023	human	ensembl	74_37	+1	known	missense	c.1057	p.A353T	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,prints_K_chnl_volt-dep_ELK,prints_2pore_dom_K_chnl,pfscan_cNMP-bd_dom	-	no_errors	KCNH6	HGNC	ENSG00000173826				76	0	0	47	20	29.8507
DCAF7	0	genome.wustl.edu	37	17	61666545	61666545	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	61666545	61666545	G	A	SNP	DCAF7	ENST00000577702	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DCAF7	HGNC	ENSG00000136485				69	0	0	29	13	30.9524
DDX42	0	genome.wustl.edu	37	17	61895700	61895700	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	61895700	61895700	C	T	SNP	DDX42	ENST00000389924	human	ensembl	74_37	+1	known	missense	c.2759	p.A920V	0.983	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX42	HGNC	ENSG00000198231				102	0	0	62	25	28.7356
FTSJ3	0	genome.wustl.edu	37	17	61897319	61897319	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	61897319	61897319	C	T	SNP	FTSJ3	ENST00000427159	human	ensembl	74_37	-1	known	missense	c.2387	p.R796H	1.000	pfam_rRNA_MeTfrase_Spb1_C	pfam_rRNA_MeTfrase_Spb1_C,pfam_rRNA_MeTrfase_FtsJ_dom,pfam_rRNA_MeTfrase_Spb1_DUF3381	-	no_errors	FTSJ3	HGNC	ENSG00000108592				70	0	0	50	15	23.0769
CSH1	0	genome.wustl.edu	37	17	61972426	61972426	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	61972426	61972426	G	A	SNP	CSH1	ENST00000316193	human	ensembl	74_37	-1	known	missense	c.610	p.R204C	1.000	pfam_Somatotropin,superfamily_4_helix_cytokine-like_core,prints_Somatotropin	pfam_Somatotropin,superfamily_4_helix_cytokine-like_core,prints_Somatotropin	-	no_errors	CSH1	HGNC	ENSG00000136488				81	0	0	63	14	18.1818
SCN4A	0	genome.wustl.edu	37	17	62026054	62026054	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	62026054	62026054	G	A	SNP	SCN4A	ENST00000435607	human	ensembl	74_37	-1	known	missense	c.3061	p.R1021C	0.925	pfam_Na_trans_assoc	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfscan_IQ_motif_EF-hand-BS,prints_Na_channel_a4su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN4A	HGNC	ENSG00000007314				32	0	0	19	4	17.3913
SMURF2	0	genome.wustl.edu	37	17	62574630	62574630	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	62574630	62574630	C	T	SNP	SMURF2	ENST00000262435	human	ensembl	74_37	-1	known	nonsense	c.837	p.W279*	1.000	pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	pfam_HECT,pfam_WW_dom,pfam_C2_dom,superfamily_HECT,superfamily_C2_dom,superfamily_WW_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_C2_dom,pfscan_WW_dom	-	no_errors	SMURF2	HGNC	ENSG00000108854				59	0	0	56	5	8.19672
RGS9	0	genome.wustl.edu	37	17	63221135	63221135	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	63221135	63221135	G	T	SNP	RGS9	ENST00000262406	human	ensembl	74_37	+1	known	missense	c.1423	p.A475S	0.006	NULL	pfam_RGS_dom,pfam_G-protein_gamma-like_dom,pfam_DEP_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_G-protein_gamma-like_dom,smart_DEP_dom,smart_G-protein_gamma-like_dom,smart_Regulat_G_prot_signal_superfam,pfscan_DEP_dom,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS9	HGNC	ENSG00000108370				80	0	0	79	7	8.13953
PITPNM3	0	genome.wustl.edu	37	17	6358942	6358942	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	6358942	6358942	C	T	SNP	PITPNM3	ENST00000262483	human	ensembl	74_37	-1	known	missense	c.2641	p.A881T	0.089	NULL	pfam_DDHD,pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2,pfscan_DDHD	-	no_errors	PITPNM3	HGNC	ENSG00000091622				11	0	0	8	7	46.6667
GEMIN4	0	genome.wustl.edu	37	17	650203	650203	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	650203	650203	C	T	SNP	GEMIN4	ENST00000319004	human	ensembl	74_37	-1	known	silent	c.1080	p.T360	0.003	NULL	NULL	-	no_errors	GEMIN4	HGNC	ENSG00000179409				90	0	0	34	14	29.1667
TXNDC17	0	genome.wustl.edu	37	17	6544532	6544532	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	6544532	6544532	C	T	SNP	TXNDC17	ENST00000250101	human	ensembl	74_37	+1	known	missense	c.130	p.P44S	1.000	pfam_DUF953_thioredox,superfamily_Thioredoxin-like_fold	pfam_DUF953_thioredox,superfamily_Thioredoxin-like_fold	-	no_errors	TXNDC17	HGNC	ENSG00000129235				42	0	0	24	12	33.3333
BPTF	0	genome.wustl.edu	37	17	65850239	65850239	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	65850239	65850239	G	A	SNP	BPTF	ENST00000321892	human	ensembl	74_37	+1	known	missense	c.797	p.R266H	1.000	pfam_DDT_dom,smart_DDT_dom_subgr,pfscan_DDT_dom_superfamily	pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BPTF	HGNC	ENSG00000171634				132	0	0	91	29	24.1667
BPTF	0	genome.wustl.edu	37	17	65908478	65908478	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	65908478	65908478	C	T	SNP	BPTF	ENST00000321892	human	ensembl	74_37	+1	known	missense	c.4856	p.A1619V	0.133	NULL	pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BPTF	HGNC	ENSG00000171634				107	0	0	71	26	26.8041
BPTF	0	genome.wustl.edu	37	17	65916176	65916176	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	65916176	65916176	G	T	SNP	BPTF	ENST00000321892	human	ensembl	74_37	+1	known	missense	c.5852	p.R1951I	1.000	NULL	pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BPTF	HGNC	ENSG00000171634				141	0	0	110	8	6.77966
BPTF	0	genome.wustl.edu	37	17	65928049	65928049	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	65928049	65928049	G	A	SNP	BPTF	ENST00000321892	human	ensembl	74_37	+1	known	missense	c.6551	p.R2184H	1.000	NULL	pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BPTF	HGNC	ENSG00000171634				109	0	0	75	5	6.25
ARSG	0	genome.wustl.edu	37	17	66343311	66343311	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	66343311	66343311	G	A	SNP	ARSG	ENST00000448504	human	ensembl	74_37	+1	known	missense	c.452	p.R151H	1.000	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSG	HGNC	ENSG00000141337				100	0	0	65	4	5.7971
ARSG	0	genome.wustl.edu	37	17	66391276	66391276	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	66391276	66391276	G	A	SNP	ARSG	ENST00000448504	human	ensembl	74_37	+1	known	missense	c.1154	p.R385H	0.383	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSG	HGNC	ENSG00000141337				69	0	0	42	23	35.3846
WIPI1	0	genome.wustl.edu	37	17	66431771	66431771	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	66431771	66431771	G	A	SNP	WIPI1	ENST00000262139	human	ensembl	74_37	-1	known	missense	c.611	p.A204V	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WIPI1	HGNC	ENSG00000070540				130	0	0	112	8	6.66667
PRKAR1A	0	genome.wustl.edu	37	17	66511578	66511578	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	66511578	66511578	G	A	SNP	PRKAR1A	ENST00000358598	human	ensembl	74_37	+1	known	missense	c.38	p.R13H	1.000	pirsf_cAMP_dep_PK_reg_su	pfam_cNMP-bd_dom,pfam_cAMP_dep_PK_reg_su_I/II_a/b,superfamily_cNMP-bd-like,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,smart_cAMP_dep_PK_reg_su_I/II_a/b,smart_cNMP-bd_dom,pirsf_cAMP_dep_PK_reg_su,pfscan_cNMP-bd_dom,prints_cAMP/cGMP_kin	-	no_errors	PRKAR1A	HGNC	ENSG00000108946				45	0	0	33	6	15.3846
ABCA8	0	genome.wustl.edu	37	17	66864467	66864467	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	66864467	66864467	C	T	SNP	ABCA8	ENST00000430352	human	ensembl	74_37	-1	known	missense	c.4742	p.S1581N	1.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA8	HGNC	ENSG00000141338				64	0	0	40	15	27.2727
ABCA9	0	genome.wustl.edu	37	17	67016615	67016615	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	67016615	67016615	G	A	SNP	ABCA9	ENST00000340001	human	ensembl	74_37	-1	known	silent	c.2514	p.G838	0.987	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA9	HGNC	ENSG00000154258				118	0	0	81	34	29.5652
ABCA6	0	genome.wustl.edu	37	17	67102220	67102220	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	67102220	67102220	G	A	SNP	ABCA6	ENST00000284425	human	ensembl	74_37	-1	known	missense	c.2522	p.A841V	0.338	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA6	HGNC	ENSG00000154262				88	0	0	54	20	27.027
ABCA10	0	genome.wustl.edu	37	17	67212456	67212456	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	67212456	67212456	A	G	SNP	ABCA10	ENST00000269081	human	ensembl	74_37	-1	known	missense	c.574	p.S192P	0.001	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA10	HGNC	ENSG00000154263				178	0	0	118	46	28.0488
ABCA5	0	genome.wustl.edu	37	17	67252377	67252377	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	67252377	67252377	T	G	SNP	ABCA5	ENST00000392677	human	ensembl	74_37	-1	known	missense	c.3782	p.D1261A	0.366	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA5	HGNC	ENSG00000154265				137	0	0	108	41	27.5168
BCL6B	0	genome.wustl.edu	37	17	6927806	6927806	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	6927806	6927806	G	A	SNP	BCL6B	ENST00000293805	human	ensembl	74_37	+1	known	missense	c.488	p.R163H	0.729	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	BCL6B	HGNC	ENSG00000161940				92	0	0	57	16	21.9178
RNMTL1	0	genome.wustl.edu	37	17	694821	694821	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	694821	694821	G	A	SNP	RNMTL1	ENST00000304478	human	ensembl	74_37	+1	known	missense	c.775	p.A259T	1.000	pfam_SpoU_MeTrfase	pfam_SpoU_MeTrfase,pfam_SpoU_subst-bd,smart_SpoU_subst-bd	-	no_errors	RNMTL1	HGNC	ENSG00000171861				49	0	0	37	13	26
NEURL4	0	genome.wustl.edu	37	17	7226176	7226176	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	7226176	7226176	G	A	SNP	NEURL4	ENST00000399464	human	ensembl	74_37	-1	known	missense	c.2603	p.A868V	0.999	superfamily_ConA-like_lec_gl_sf,pfscan_Neu_Z	pfam_Neu_Z,superfamily_ConA-like_lec_gl_sf,smart_Neu_Z,pfscan_Neu_Z	-	no_errors	NEURL4	HGNC	ENSG00000215041				148	0	0	77	23	23
BTBD17	0	genome.wustl.edu	37	17	72352858	72352858	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	72352858	72352858	C	T	SNP	BTBD17	ENST00000375366	human	ensembl	74_37	-1	known	missense	c.1375	p.A459T	1.000	NULL	pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD17	HGNC	ENSG00000204347				31	0	0	21	4	16
GGA3	0	genome.wustl.edu	37	17	73235918	73235918	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	73235918	73235918	G	A	SNP	GGA3	ENST00000245541	human	ensembl	74_37	-1	known	missense	c.1535	p.A512V	0.000	NULL	pfam_VHS,pfam_GAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_Coatomer/clathrin_app_Ig-like,superfamily_ENTH_VHS,smart_VHS_subgr,smart_Clathrin_a/b/g-adaptin_app_Ig,pfscan_Clathrin_g-adaptin_app,pfscan_GAT,pfscan_VHS	-	no_errors	GGA3	HGNC	ENSG00000125447				64	0	0	24	7	22.5806
GGA3	0	genome.wustl.edu	37	17	73236020	73236020	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	73236020	73236020	C	T	SNP	GGA3	ENST00000245541	human	ensembl	74_37	-1	known	missense	c.1433	p.S478N	0.000	NULL	pfam_VHS,pfam_GAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_Coatomer/clathrin_app_Ig-like,superfamily_ENTH_VHS,smart_VHS_subgr,smart_Clathrin_a/b/g-adaptin_app_Ig,pfscan_Clathrin_g-adaptin_app,pfscan_GAT,pfscan_VHS	-	no_errors	GGA3	HGNC	ENSG00000125447				18	0	0	4	4	50
LLGL2	0	genome.wustl.edu	37	17	73566553	73566553	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	73566553	73566553	C	T	SNP	LLGL2	ENST00000392550	human	ensembl	74_37	+1	known	missense	c.1999	p.R667W	1.000	NULL	pfam_LLGL2,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,prints_Lethal2_giant	-	no_errors	LLGL2	HGNC	ENSG00000073350				8	0	0	4	3	42.8571
LLGL2	0	genome.wustl.edu	37	17	73567852	73567852	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	73567852	73567852	C	T	SNP	LLGL2	ENST00000392550	human	ensembl	74_37	+1	known	missense	c.2281	p.R761W	1.000	NULL	pfam_LLGL2,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,prints_Lethal2_giant	-	no_errors	LLGL2	HGNC	ENSG00000073350				30	0	0	25	4	13.7931
SAP30BP	0	genome.wustl.edu	37	17	73702633	73702633	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	73702633	73702633	C	T	SNP	SAP30BP	ENST00000579005	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SAP30BP	HGNC	ENSG00000161526				50	0	0	30	17	36.1702
EVPL	0	genome.wustl.edu	37	17	74005331	74005331	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	74005331	74005331	G	A	SNP	EVPL	ENST00000301607	human	ensembl	74_37	-1	known	missense	c.3955	p.R1319C	1.000	NULL	pfam_Plectin_repeat,superfamily_Ferritin-like_SF,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	EVPL	HGNC	ENSG00000167880				145	0	0	104	12	10.3448
POLR2A	0	genome.wustl.edu	37	17	7401440	7401440	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	7401440	7401440	G	A	SNP	POLR2A	ENST00000322644	human	ensembl	74_37	+1	known	missense	c.1246	p.A416T	1.000	pfam_RNA_pol_asu,smart_RNA_pol_N	pfam_RNA_pol_Rpb1_1,pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_Rpb1_6,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_7,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,pfam_RNA_pol_II_repeat_euk,smart_RNA_pol_N	-	no_errors	POLR2A	HGNC	ENSG00000181222				61	0	0	36	15	29.4118
POLR2A	0	genome.wustl.edu	37	17	7406984	7406984	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	7406984	7406984	G	A	SNP	POLR2A	ENST00000322644	human	ensembl	74_37	+1	known	silent	c.3114	p.T1038	0.001	pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_Rpb1_6	pfam_RNA_pol_Rpb1_1,pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_Rpb1_6,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_7,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,pfam_RNA_pol_II_repeat_euk,smart_RNA_pol_N	-	no_errors	POLR2A	HGNC	ENSG00000181222				48	0	0	35	5	12.5
QRICH2	0	genome.wustl.edu	37	17	74287572	74287572	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	74287572	74287572	G	A	SNP	QRICH2	ENST00000262765	human	ensembl	74_37	-1	known	missense	c.2738	p.A913V	0.000	NULL	NULL	-	no_errors	QRICH2	HGNC	ENSG00000129646				114	0	0	88	7	7.36842
QRICH2	0	genome.wustl.edu	37	17	74289360	74289360	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	74289360	74289360	C	T	SNP	QRICH2	ENST00000262765	human	ensembl	74_37	-1	known	missense	c.950	p.R317H	0.000	NULL	NULL	-	no_errors	QRICH2	HGNC	ENSG00000129646				144	0	0	94	10	9.61538
CYGB	0	genome.wustl.edu	37	17	74527194	74527194	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	74527194	74527194	C	T	SNP	CYGB	ENST00000293230	human	ensembl	74_37	-1	known	missense	c.406	p.A136T	0.676	superfamily_Globin-like,pfscan_Globin,prints_Myoglobin	pfam_Globin,superfamily_Globin-like,pfscan_Globin,prints_Globin_lamprey/hagfish,prints_Myoglobin	-	no_errors	CYGB	HGNC	ENSG00000161544				32	0	0	23	6	20.6897
TP53	0	genome.wustl.edu	37	17	7577548	7577548	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	7577548	7577548	C	G	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.733	p.G245R	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				64	0	0	38	12	24
TNRC6C	0	genome.wustl.edu	37	17	76046100	76046100	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	76046100	76046100	C	T	SNP	TNRC6C	ENST00000335749	human	ensembl	74_37	+1	known	silent	c.957	p.G319	0.131	NULL	pfam_Argonaute_hook_dom,pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	TNRC6C	HGNC	ENSG00000078687				54	0	0	28	11	28.2051
WRAP53	0	genome.wustl.edu	37	17	7604990	7604990	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	7604990	7604990	G	A	SNP	WRAP53	ENST00000316024	human	ensembl	74_37	+1	known	missense	c.838	p.A280T	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WRAP53	HGNC	ENSG00000141499				92	0	0	73	5	6.41026
SOCS3	0	genome.wustl.edu	37	17	76354897	76354897	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	76354897	76354897	G	A	SNP	SOCS3	ENST00000330871	human	ensembl	74_37	-1	known	missense	c.280	p.R94C	1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_SH2,pfam_SOCS_C,smart_SH2,smart_SOCS_C,pfscan_SOCS_C,pfscan_SH2	-	no_errors	SOCS3	HGNC	ENSG00000184557				16	0	0	11	3	21.4286
DNAH2	0	genome.wustl.edu	37	17	7646274	7646274	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	7646274	7646274	G	A	SNP	DNAH2	ENST00000389173	human	ensembl	74_37	+1	known	missense	c.1718	p.R573H	0.997	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914				40	0	0	31	9	22.5
DNAH2	0	genome.wustl.edu	37	17	7661926	7661926	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	7661926	7661926	C	T	SNP	DNAH2	ENST00000389173	human	ensembl	74_37	+1	known	missense	c.2165	p.A722V	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914				83	0	0	70	18	20.4545
ENGASE	0	genome.wustl.edu	37	17	77082286	77082286	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	77082286	77082286	G	A	SNP	ENGASE	ENST00000579016	human	ensembl	74_37	+1	known	missense	c.2087	p.R696Q	1.000	NULL	pfam_Glyco_hydro_85,pfscan_BRCT_dom	-	no_errors	ENGASE	HGNC	ENSG00000167280				36	0	0	30	6	16.6667
KDM6B	0	genome.wustl.edu	37	17	7751760	7751760	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	7751760	7751760	C	T	SNP	KDM6B	ENST00000254846	human	ensembl	74_37	+1	known	silent	c.2154	p.G718	0.981	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM6B	HGNC	ENSG00000132510				93	0	0	61	15	19.7368
CCDC40	0	genome.wustl.edu	37	17	78013765	78013765	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	78013765	78013765	C	T	SNP	CCDC40	ENST00000397545	human	ensembl	74_37	+1	known	missense	c.248	p.A83V	0.000	NULL	pfam_E3_ubiquit_lig_BRE1	-	no_errors	CCDC40	HGNC	ENSG00000141519				61	0	0	54	16	22.8571
CCDC40	0	genome.wustl.edu	37	17	78055728	78055728	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	78055728	78055728	C	T	SNP	CCDC40	ENST00000397545	human	ensembl	74_37	+1	known	silent	c.1860	p.G620	0.000	NULL	pfam_E3_ubiquit_lig_BRE1	-	no_errors	CCDC40	HGNC	ENSG00000141519				37	0	0	25	11	30.5556
CHD3	0	genome.wustl.edu	37	17	7812021	7812021	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	7812021	7812021	C	T	SNP	CHD3	ENST00000330494	human	ensembl	74_37	+1	known	silent	c.5268	p.G1756	1.000	pfam_CHD_C2	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD3	HGNC	ENSG00000170004				254	0	0	200	16	7.40741
KCNAB3	0	genome.wustl.edu	37	17	7826435	7826435	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	7826435	7826435	C	T	SNP	KCNAB3	ENST00000303790	human	ensembl	74_37	-1	known	silent	c.1200	p.P400	0.019	superfamily_NADP_OxRdtase_dom	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_K_chnl_volt-dep_bsu_KCNAB-rel,prints_K_chnl_volt-dep_bsu_KCNAB3,prints_K_chnl_volt-dep_bsu_KCNAB1,tigrfam_K_chnl_volt-dep_bsu_KCNAB	-	no_errors	KCNAB3	HGNC	ENSG00000170049				48	0	0	30	14	31.8182
RNF213	0	genome.wustl.edu	37	17	78317021	78317021	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	78317021	78317021	G	A	SNP	RNF213	ENST00000582970	human	ensembl	74_37	+1	known	missense	c.6079	p.D2027N	0.173	NULL	superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821				57	0	0	56	12	17.6471
RPTOR	0	genome.wustl.edu	37	17	78854244	78854244	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	78854244	78854244	C	T	SNP	RPTOR	ENST00000306801	human	ensembl	74_37	+1	known	silent	c.1539	p.N513	1.000	superfamily_ARM-type_fold	pfam_HEAT,pfam_WD40_repeat,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom,prints_Raptor	-	no_errors	RPTOR	HGNC	ENSG00000141564				49	0	0	42	4	8.69565
RPTOR	0	genome.wustl.edu	37	17	78923244	78923244	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	78923244	78923244	C	T	SNP	RPTOR	ENST00000306801	human	ensembl	74_37	+1	known	silent	c.3267	p.D1089	0.985	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_HEAT,pfam_WD40_repeat,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom,prints_Raptor	-	no_errors	RPTOR	HGNC	ENSG00000141564				174	0	0	115	10	8
SLC25A10	0	genome.wustl.edu	37	17	79671731	79671731	+	Silent	SNP	T	T	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	79671731	79671731	T	A	SNP	SLC25A10	ENST00000541223	human	ensembl	74_37	+1	known	silent	c.330	p.A110	0.010	superfamily_Ribosomal_L7/L12_oligo	pfam_Mitochondrial_sb/sol_carrier,pfam_Ribosomal_L7/L12_C,superfamily_Mt_carrier_dom,superfamily_Ribosomal_L7/L12_oligo,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_uncoupling	-	no_errors	SLC25A10	HGNC	ENSG00000183048				68	0	0	23	17	42.5
FASN	0	genome.wustl.edu	37	17	80037254	80037254	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	80037254	80037254	G	A	SNP	FASN	ENST00000306749	human	ensembl	74_37	-1	known	silent	c.7377	p.G2459	0.008	pfam_Thioesterase	pfam_Acyl_transferase,pfam_Ketoacyl_synth_N,pfam_Thioesterase,pfam_PKS_KR,pfam_DH_sc/Rdtase_SDR,pfam_Ketoacyl_synth_C,pfam_ADH_C,pfam_Acyl_carrier_prot-like,pfam_Methyltransf_12,pfam_Methyltransf_11,superfamily_Thiolase-like,superfamily_Acyl_Trfase/lysoPLipase,superfamily_GroES-like,superfamily_Acyl_carrier_prot-like,superfamily_Malonyl_transacylase_ACP-bd,smart_PKS_Beta-ketoAc_synthase_dom,smart_PKS_acyl_transferase,smart_PKS_dehydratase,smart_PKS_ER,smart_PKS/FAS_KR,smart_PKS_PP-bd,pfscan_Acyl_carrier_prot-like	-	no_errors	FASN	HGNC	ENSG00000169710				34	0	0	22	7	24.1379
FASN	0	genome.wustl.edu	37	17	80038074	80038074	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	80038074	80038074	G	A	SNP	FASN	ENST00000306749	human	ensembl	74_37	-1	known	missense	c.7088	p.A2363V	0.965	pfam_Thioesterase	pfam_Acyl_transferase,pfam_Ketoacyl_synth_N,pfam_Thioesterase,pfam_PKS_KR,pfam_DH_sc/Rdtase_SDR,pfam_Ketoacyl_synth_C,pfam_ADH_C,pfam_Acyl_carrier_prot-like,pfam_Methyltransf_12,pfam_Methyltransf_11,superfamily_Thiolase-like,superfamily_Acyl_Trfase/lysoPLipase,superfamily_GroES-like,superfamily_Acyl_carrier_prot-like,superfamily_Malonyl_transacylase_ACP-bd,smart_PKS_Beta-ketoAc_synthase_dom,smart_PKS_acyl_transferase,smart_PKS_dehydratase,smart_PKS_ER,smart_PKS/FAS_KR,smart_PKS_PP-bd,pfscan_Acyl_carrier_prot-like	-	no_errors	FASN	HGNC	ENSG00000169710				82	0	0	49	9	15.5172
FASN	0	genome.wustl.edu	37	17	80040218	80040218	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	80040218	80040218	C	T	SNP	FASN	ENST00000306749	human	ensembl	74_37	-1	known	missense	c.5992	p.G1998S	1.000	pfam_PKS_KR,pfam_DH_sc/Rdtase_SDR,smart_PKS/FAS_KR	pfam_Acyl_transferase,pfam_Ketoacyl_synth_N,pfam_Thioesterase,pfam_PKS_KR,pfam_DH_sc/Rdtase_SDR,pfam_Ketoacyl_synth_C,pfam_ADH_C,pfam_Acyl_carrier_prot-like,pfam_Methyltransf_12,pfam_Methyltransf_11,superfamily_Thiolase-like,superfamily_Acyl_Trfase/lysoPLipase,superfamily_GroES-like,superfamily_Acyl_carrier_prot-like,superfamily_Malonyl_transacylase_ACP-bd,smart_PKS_Beta-ketoAc_synthase_dom,smart_PKS_acyl_transferase,smart_PKS_dehydratase,smart_PKS_ER,smart_PKS/FAS_KR,smart_PKS_PP-bd,pfscan_Acyl_carrier_prot-like	-	no_errors	FASN	HGNC	ENSG00000169710				26	0	0	22	3	12
NARF	0	genome.wustl.edu	37	17	80430461	80430461	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	80430461	80430461	C	T	SNP	NARF	ENST00000309794	human	ensembl	74_37	+1	known	missense	c.407	p.T136M	0.634	pfam_Fe_hydrogenase_lsu_C,superfamily_Fe_hydrogenase	pfam_Fe_hydrogenase_lsu_C,pfam_Fe_hydrogenase_ssu-like,superfamily_Fe_hydrogenase,smart_Fe_hydrogenase_ssu-like	-	no_errors	NARF	HGNC	ENSG00000141562				68	0	0	59	5	7.8125
TBCD	0	genome.wustl.edu	37	17	80772782	80772782	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	80772782	80772782	C	T	SNP	TBCD	ENST00000355528	human	ensembl	74_37	+1	known	silent	c.1290	p.G430	1.000	superfamily_ARM-type_fold	pfam_Tubulin_specific_chaperoneD_C,superfamily_ARM-type_fold	-	no_errors	TBCD	HGNC	ENSG00000141556				25	0	0	16	4	20
TBCD	0	genome.wustl.edu	37	17	80900419	80900419	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	80900419	80900419	G	A	SNP	TBCD	ENST00000576603	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	TBCD	HGNC	ENSG00000141556				20	0	0	15	4	21.0526
CTC1	0	genome.wustl.edu	37	17	8141902	8141902	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	8141902	8141902	G	A	SNP	CTC1	ENST00000315684	human	ensembl	74_37	-1	known	silent	c.243	p.C81	1.000	NULL	NULL	-	no_errors	CTC1	HGNC	ENSG00000178971				81	0	0	53	24	31.1688
MYH10	0	genome.wustl.edu	37	17	8526285	8526285	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	8526285	8526285	T	C	SNP	MYH10	ENST00000396239	human	ensembl	74_37	-1	known	missense	c.280	p.T94A	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_HR1_rho-bd,superfamily_UBA-like,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH10	HGNC	ENSG00000133026				138	1	0.719424	100	41	29.078
PIK3R5	0	genome.wustl.edu	37	17	8789551	8789551	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	8789551	8789551	G	A	SNP	PIK3R5	ENST00000447110	human	ensembl	74_37	-1	known	missense	c.2123	p.A708V	1.000	pfam_PI3K_1B_gamma_p101_su	pfam_PI3K_1B_gamma_p101_su	-	no_errors	PIK3R5	HGNC	ENSG00000141506				29	0	0	19	9	32.1429
PIK3R5	0	genome.wustl.edu	37	17	8791611	8791611	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	8791611	8791611	C	T	SNP	PIK3R5	ENST00000447110	human	ensembl	74_37	-1	known	missense	c.1493	p.R498H	0.008	pfam_PI3K_1B_gamma_p101_su	pfam_PI3K_1B_gamma_p101_su	-	no_errors	PIK3R5	HGNC	ENSG00000141506				31	0	0	17	10	37.037
NTN1	0	genome.wustl.edu	37	17	8926018	8926018	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	8926018	8926018	G	A	SNP	NTN1	ENST00000173229	human	ensembl	74_37	+1	known	missense	c.328	p.D110N	1.000	pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,pfscan_Laminin_N	pfam_Laminin_N,pfam_Netrin_module_non-TIMP,pfam_EGF_laminin,superfamily_TIMP-like_OB-fold,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_Netrin_module_non-TIMP,pfscan_EGF_laminin,pfscan_Laminin_N,pfscan_Netrin_domain	-	no_errors	NTN1	HGNC	ENSG00000065320				12	0	0	13	5	27.7778
USP43	0	genome.wustl.edu	37	17	9559771	9559771	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	9559771	9559771	G	A	SNP	USP43	ENST00000285199	human	ensembl	74_37	+1	known	missense	c.556	p.A186T	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP43	HGNC	ENSG00000154914				22	0	0	16	7	30.4348
DHRS7C	0	genome.wustl.edu	37	17	9674988	9674988	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	9674988	9674988	G	A	SNP	DHRS7C	ENST00000330255	human	ensembl	74_37	-1	known	silent	c.756	p.G252	0.997	NULL	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	DHRS7C	HGNC	ENSG00000184544				25	0	0	8	9	52.9412
GLP2R	0	genome.wustl.edu	37	17	9739794	9739794	+	Splice_Site	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	9739794	9739794	T	C	SNP	GLP2R	ENST00000262441	human	ensembl	74_37	+1	known	splice_site	c.382+2	e3+2	0.997	-	-	-	no_errors	GLP2R	HGNC	ENSG00000065325				96	0	0	73	24	24.7423
PIEZO2	0	genome.wustl.edu	37	18	10696474	10696474	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	10696474	10696474	G	A	SNP	PIEZO2	ENST00000538948	human	ensembl	74_37	-1	known	silent	c.423	p.S141	0.974	NULL	pfam_Piezo	-	no_errors	PIEZO2	HGNC	ENSG00000154864				103	0	0	71	56	44.0945
MPPE1	0	genome.wustl.edu	37	18	11884615	11884615	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	11884615	11884615	C	T	SNP	MPPE1	ENST00000588072	human	ensembl	74_37	-1	known	silent	c.1020	p.T340	0.000	NULL	pfam_PEstase_dom	-	no_errors	MPPE1	HGNC	ENSG00000154889				77	0	0	78	7	8.23529
PTPN2	0	genome.wustl.edu	37	18	12817195	12817195	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	12817195	12817195	C	T	SNP	PTPN2	ENST00000309660	human	ensembl	74_37	-1	known	missense	c.665	p.R222H	1.000	pirsf_Ptpn1/Ptpn2,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	pirsf_Ptpn1/Ptpn2,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN2	HGNC	ENSG00000175354				151	0	0	122	38	23.75
ZNF519	0	genome.wustl.edu	37	18	14124358	14124358	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	14124358	14124358	C	T	SNP	ZNF519	ENST00000590202	human	ensembl	74_37	-1	known	missense	c.121	p.V41I	0.232	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF519	HGNC	ENSG00000175322				112	0	0	93	14	13.0841
CXADRP3	0	genome.wustl.edu	37	18	14479149	14479149	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	14479149	14479149	G	A	SNP	CXADRP3	ENST00000581457	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.977	-	-	-	no_errors	CXADRP3	HGNC	ENSG00000265766				41	0	0	47	9	16.0714
ROCK1	0	genome.wustl.edu	37	18	18622132	18622132	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	18622132	18622132	A	T	SNP	ROCK1	ENST00000399799	human	ensembl	74_37	-1	known	missense	c.885	p.N295K	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Rho-assoc_coiled-coil_kin,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Rho-bd_dom,pfam_HR1_rho-bd,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,pirsf_Rho-assoc_coiled-coil_kin,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	ROCK1	HGNC	ENSG00000067900				71	0	0	85	8	8.60215
NPC1	0	genome.wustl.edu	37	18	21140277	21140277	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	21140277	21140277	C	T	SNP	NPC1	ENST00000269228	human	ensembl	74_37	-1	known	missense	c.799	p.A267T	1.000	tigrfam_NP_C_type	pfam_Patched,pfam_MMPL_dom,pfscan_SSD,tigrfam_NP_C_type	-	no_errors	NPC1	HGNC	ENSG00000141458				91	0	0	48	53	52.4752
HRH4	0	genome.wustl.edu	37	18	22048786	22048786	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	22048786	22048786	G	A	SNP	HRH4	ENST00000256906	human	ensembl	74_37	+1	known	silent	c.228	p.T76	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Histamine_H4_rcpt,prints_GPCR_Rhodpsn	-	no_errors	HRH4	HGNC	ENSG00000134489				69	0	0	88	9	9.27835
CHST9	0	genome.wustl.edu	37	18	24497286	24497286	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	24497286	24497286	A	G	SNP	CHST9	ENST00000284224	human	ensembl	74_37	-1	known	missense	c.269	p.V90A	0.000	NULL	pfam_Sulfotransferase	-	no_errors	CHST9	HGNC	ENSG00000154080				176	0	0	194	13	6.28019
METTL4	0	genome.wustl.edu	37	18	2544238	2544238	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	2544238	2544238	A	G	SNP	METTL4	ENST00000574538	human	ensembl	74_37	-1	known	missense	c.1229	p.V410A	1.000	pfam_MT-A70-like,pfscan_MT-A70-like	pfam_MT-A70-like,pfscan_MT-A70-like	-	no_errors	METTL4	HGNC	ENSG00000101574				60	0	0	66	4	5.71429
SMCHD1	0	genome.wustl.edu	37	18	2724949	2724949	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	2724949	2724949	C	T	SNP	SMCHD1	ENST00000320876	human	ensembl	74_37	+1	known	nonsense	c.2656	p.R886*	1.000	NULL	pfam_SMC_hinge,superfamily_SMC_hinge,superfamily_HATPase_ATP-bd,smart_SMC_hinge	-	no_errors	SMCHD1	HGNC	ENSG00000101596				29	0	0	31	5	13.8889
DSC2	0	genome.wustl.edu	37	18	28671070	28671070	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	28671070	28671070	C	T	SNP	DSC2	ENST00000280904	human	ensembl	74_37	-1	known	missense	c.395	p.R132H	0.812	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Cadherin/Desmocollin,prints_Desmosomal_cadherin	-	no_errors	DSC2	HGNC	ENSG00000134755				82	0	0	87	8	8.42105
DSC1	0	genome.wustl.edu	37	18	28714691	28714691	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	28714691	28714691	C	T	SNP	DSC1	ENST00000257198	human	ensembl	74_37	-1	known	missense	c.1720	p.A574T	0.987	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_pro_dom,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin/Desmocollin,prints_Cadherin,prints_Desmosomal_cadherin	-	no_errors	DSC1	HGNC	ENSG00000134765				44	0	0	33	9	21.4286
DSG3	0	genome.wustl.edu	37	18	29049154	29049154	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	29049154	29049154	G	A	SNP	DSG3	ENST00000257189	human	ensembl	74_37	+1	known	missense	c.1739	p.R580H	0.043	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmoglein,prints_Desmosomal_cadherin	-	no_errors	DSG3	HGNC	ENSG00000134757				189	0	0	177	43	19.5455
DSG2	0	genome.wustl.edu	37	18	29125953	29125953	+	Silent	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	29125953	29125953	T	C	SNP	DSG2	ENST00000261590	human	ensembl	74_37	+1	known	silent	c.2604	p.H868	0.000	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmoglein,prints_Desmosomal_cadherin	-	no_errors	DSG2	HGNC	ENSG00000046604				179	0	0	154	34	18.0851
LPIN2	0	genome.wustl.edu	37	18	2924406	2924406	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	2924406	2924406	T	C	SNP	LPIN2	ENST00000261596	human	ensembl	74_37	-1	known	missense	c.2077	p.T693A	0.998	pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2	pfam_LNS2,pfam_Lipin_N,superfamily_HAD-like_dom,smart_LNS2	-	no_errors	LPIN2	HGNC	ENSG00000101577				102	0	0	108	6	5.26316
TRAPPC8	0	genome.wustl.edu	37	18	29412060	29412060	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	29412060	29412060	G	A	SNP	TRAPPC8	ENST00000283351	human	ensembl	74_37	-1	known	missense	c.4060	p.H1354Y	1.000	NULL	NULL	-	no_errors	TRAPPC8	HGNC	ENSG00000153339				69	0	0	101	10	9.00901
KLHL14	0	genome.wustl.edu	37	18	30321990	30321990	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	30321990	30321990	G	A	SNP	KLHL14	ENST00000359358	human	ensembl	74_37	-1	known	silent	c.970	p.L324	1.000	smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL14	HGNC	ENSG00000197705				64	0	0	52	28	35
NOL4	0	genome.wustl.edu	37	18	31709979	31709979	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	31709979	31709979	G	A	SNP	NOL4	ENST00000261592	human	ensembl	74_37	-1	known	silent	c.270	p.G90	1.000	NULL	NULL	-	no_errors	NOL4	HGNC	ENSG00000101746				56	0	0	39	20	33.8983
MYL12B	0	genome.wustl.edu	37	18	3277382	3277382	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	3277382	3277382	G	A	SNP	MYL12B	ENST00000237500	human	ensembl	74_37	+1	known	missense	c.316	p.A106T	1.000	smart_EF_hand_dom,pfscan_EF_hand_dom	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	MYL12B	HGNC	ENSG00000118680				132	1	0.75188	94	50	34.7222
GALNT1	0	genome.wustl.edu	37	18	33263470	33263470	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	33263470	33263470	G	A	SNP	GALNT1	ENST00000269195	human	ensembl	74_37	+1	known	silent	c.597	p.V199	0.985	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT1	HGNC	ENSG00000141429				38	0	0	27	36	57.1429
MOCOS	0	genome.wustl.edu	37	18	33785068	33785068	+	Silent	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	33785068	33785068	C	A	SNP	MOCOS	ENST00000261326	human	ensembl	74_37	+1	known	silent	c.1047	p.T349	0.964	pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase	pfam_MOSC_N,pfam_MoCF_Sase_C,pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase,superfamily_Pyrv_Knase-like_insert_dom	-	no_errors	MOCOS	HGNC	ENSG00000075643				82	0	0	65	17	20.7317
MOCOS	0	genome.wustl.edu	37	18	33846728	33846728	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	33846728	33846728	A	G	SNP	MOCOS	ENST00000261326	human	ensembl	74_37	+1	known	missense	c.2426	p.H809R	1.000	pfam_MoCF_Sase_C,superfamily_Pyrv_Knase-like_insert_dom	pfam_MOSC_N,pfam_MoCF_Sase_C,pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase,superfamily_Pyrv_Knase-like_insert_dom	-	no_errors	MOCOS	HGNC	ENSG00000075643				42	0	0	38	10	20.8333
FHOD3	0	genome.wustl.edu	37	18	34310720	34310720	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	34310720	34310720	G	A	SNP	FHOD3	ENST00000257209	human	ensembl	74_37	+1	known	missense	c.3004	p.A1002T	1.000	pfam_FH2_Formin,smart_FH2_Formin	pfam_FH2_Formin,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FHOD3	HGNC	ENSG00000134775				86	0	0	103	7	6.36364
FHOD3	0	genome.wustl.edu	37	18	34349305	34349305	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	34349305	34349305	C	T	SNP	FHOD3	ENST00000257209	human	ensembl	74_37	+1	known	missense	c.4153	p.R1385C	1.000	NULL	pfam_FH2_Formin,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FHOD3	HGNC	ENSG00000134775				88	0	0	48	42	46.6667
KIAA1328	0	genome.wustl.edu	37	18	34752963	34752963	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	34752963	34752963	C	T	SNP	KIAA1328	ENST00000280020	human	ensembl	74_37	+1	known	missense	c.1442	p.A481V	0.994	NULL	NULL	-	no_errors	KIAA1328	HGNC	ENSG00000150477				161	0	0	167	10	5.64972
CELF4	0	genome.wustl.edu	37	18	34854311	34854311	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	34854311	34854311	G	A	SNP	CELF4	ENST00000420428	human	ensembl	74_37	-1	known	missense	c.764	p.A255V	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CELF4	HGNC	ENSG00000101489				69	0	0	32	44	57.8947
PIK3C3	0	genome.wustl.edu	37	18	39575890	39575890	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	39575890	39575890	C	T	SNP	PIK3C3	ENST00000262039	human	ensembl	74_37	+1	known	missense	c.823	p.R275W	1.000	superfamily_ARM-type_fold,pirsf_PI3K_Vps34	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_C2_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pirsf_PI3K_Vps34,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C3	HGNC	ENSG00000078142				58	0	0	71	10	12.3457
SETBP1	0	genome.wustl.edu	37	18	42531132	42531132	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	42531132	42531132	C	T	SNP	SETBP1	ENST00000282030	human	ensembl	74_37	+1	known	silent	c.1827	p.P609	0.297	NULL	smart_AT_hook_DNA-bd_motif	-	no_errors	SETBP1	HGNC	ENSG00000152217				95	0	0	62	38	38
SLC14A2	0	genome.wustl.edu	37	18	43204637	43204637	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	43204637	43204637	A	G	SNP	SLC14A2	ENST00000255226	human	ensembl	74_37	+1	known	missense	c.8	p.D3G	0.176	NULL	pfam_Urea_transporter	-	no_errors	SLC14A2	HGNC	ENSG00000132874				56	0	0	53	4	7.01754
SLC14A1	0	genome.wustl.edu	37	18	43310355	43310355	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	43310355	43310355	C	T	SNP	SLC14A1	ENST00000415427	human	ensembl	74_37	+1	known	missense	c.238	p.P80S	0.000	NULL	pfam_Urea_transporter	-	no_errors	SLC14A1	HGNC	ENSG00000141469				84	0	0	80	5	5.88235
ACAA2	0	genome.wustl.edu	37	18	47329200	47329200	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	47329200	47329200	G	A	SNP	ACAA2	ENST00000285093	human	ensembl	74_37	-1	known	nonsense	c.40	p.R14*	1.000	pfam_Thiolase_N,superfamily_Thiolase-like,pirsf_Thiolase,tigrfam_Thiolase	pfam_Thiolase_N,pfam_Thiolase_C,superfamily_Thiolase-like,pirsf_Thiolase,tigrfam_Thiolase	-	no_errors	ACAA2	HGNC	ENSG00000167315				120	0	0	85	31	26.7241
MYO5B	0	genome.wustl.edu	37	18	47566549	47566549	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	47566549	47566549	G	A	SNP	MYO5B	ENST00000285039	human	ensembl	74_37	-1	known	missense	c.274	p.R92C	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5B	HGNC	ENSG00000167306				272	0	0	260	50	16.129
ME2	0	genome.wustl.edu	37	18	48458685	48458685	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	48458685	48458685	C	T	SNP	ME2	ENST00000321341	human	ensembl	74_37	+1	known	nonsense	c.1372	p.R458*	0.736	pfam_Malic_NAD-bd,smart_Malic_NAD-bd	pfam_Malic_NAD-bd,pfam_Malic_N,smart_Malic_NAD-bd,prints_Malic_OxRdtase	-	no_errors	ME2	HGNC	ENSG00000082212				92	0	0	106	8	7.01754
SMAD4	0	genome.wustl.edu	37	18	48593465	48593465	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	48593465	48593465	G	A	SNP	SMAD4	ENST00000342988	human	ensembl	74_37	+1	known	missense	c.1216	p.A406T	1.000	pfam_SMAD_dom_Dwarfin-type,superfamily_SMAD_FHA_domain,smart_SMAD_dom_Dwarfin-type,pfscan_SMAD_dom_Dwarfin-type	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD4	HGNC	ENSG00000141646				82	0	0	54	42	43.75
DCC	0	genome.wustl.edu	37	18	50923715	50923715	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	50923715	50923715	G	A	SNP	DCC	ENST00000442544	human	ensembl	74_37	+1	known	missense	c.2726	p.G909D	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DCC	HGNC	ENSG00000187323				111	0	0	145	32	18.0791
MBD2	0	genome.wustl.edu	37	18	51691025	51691025	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	51691025	51691025	G	A	SNP	MBD2	ENST00000256429	human	ensembl	74_37	-1	known	missense	c.977	p.A326V	1.000	NULL	pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_dom,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MBD2	HGNC	ENSG00000134046				72	0	0	77	6	7.22892
DYNAP	0	genome.wustl.edu	37	18	52262274	52262274	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	52262274	52262274	C	T	SNP	DYNAP	ENST00000321600	human	ensembl	74_37	+1	known	silent	c.240	p.C80	0.000	NULL	NULL	-	no_errors	DYNAP	HGNC	ENSG00000178690				139	0	0	112	93	45.3659
CCDC68	0	genome.wustl.edu	37	18	52609944	52609944	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	52609944	52609944	A	G	SNP	CCDC68	ENST00000337363	human	ensembl	74_37	-1	known	missense	c.79	p.S27P	0.005	NULL	superfamily_Prefoldin	-	no_errors	CCDC68	HGNC	ENSG00000166510				91	0	0	84	18	17.6471
ZBTB14	0	genome.wustl.edu	37	18	5292149	5292149	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	5292149	5292149	T	C	SNP	ZBTB14	ENST00000357006	human	ensembl	74_37	-1	known	missense	c.58	p.T20A	1.000	superfamily_BTB/POZ_fold	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB14	HGNC	ENSG00000198081				61	0	0	72	18	20
TCF4	0	genome.wustl.edu	37	18	52946880	52946880	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	52946880	52946880	G	A	SNP	TCF4	ENST00000398339	human	ensembl	74_37	-1	known	missense	c.863	p.A288V	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	TCF4	HGNC	ENSG00000196628				88	0	0	60	24	28.5714
EPB41L3	0	genome.wustl.edu	37	18	5407700	5407700	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	5407700	5407700	C	A	SNP	EPB41L3	ENST00000341928	human	ensembl	74_37	-1	known	missense	c.2157	p.Q719H	1.000	pirsf_Band_41_protein,pfam_SAB_dom	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB_dom,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L3	HGNC	ENSG00000082397				85	0	0	94	21	18.2609
ST8SIA3	0	genome.wustl.edu	37	18	55020138	55020138	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	55020138	55020138	G	A	SNP	ST8SIA3	ENST00000324000	human	ensembl	74_37	+1	known	missense	c.61	p.A21T	1.000	pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST8SIA3	HGNC	ENSG00000177511				49	0	0	22	14	38.8889
FECH	0	genome.wustl.edu	37	18	55218072	55218072	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	55218072	55218072	C	T	SNP	FECH	ENST00000382873	human	ensembl	74_37	-1	known	missense	c.1162	p.A388T	1.000	pfam_Ferrochelatase,tigrfam_Ferrochelatase	pfam_Ferrochelatase,tigrfam_Ferrochelatase	-	no_errors	FECH	HGNC	ENSG00000066926				60	0	0	65	8	10.9589
ALPK2	0	genome.wustl.edu	37	18	56205101	56205101	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	56205101	56205101	G	A	SNP	ALPK2	ENST00000361673	human	ensembl	74_37	-1	known	missense	c.2318	p.A773V	0.000	NULL	pfam_MHCK_EF2_kinase,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase,pfscan_Ig-like_dom	-	no_errors	ALPK2	HGNC	ENSG00000198796				89	0	0	88	28	24.1379
MALT1	0	genome.wustl.edu	37	18	56412961	56412961	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	56412961	56412961	G	A	SNP	MALT1	ENST00000348428	human	ensembl	74_37	+1	known	missense	c.1975	p.V659I	0.998	NULL	pfam_Pept_C14_caspase,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_DEATH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Pept_C14_ICE_p20,pfscan_Ig-like_dom	-	no_errors	MALT1	HGNC	ENSG00000172175				94	0	0	121	26	17.6871
ZNF532	0	genome.wustl.edu	37	18	56587202	56587202	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	56587202	56587202	G	A	SNP	ZNF532	ENST00000336078	human	ensembl	74_37	+1	known	silent	c.1683	p.S561	0.001	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF532	HGNC	ENSG00000074657				28	0	0	25	4	13.7931
MC4R	0	genome.wustl.edu	37	18	58038852	58038852	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	58038852	58038852	G	A	SNP	MC4R	ENST00000299766	human	ensembl	74_37	-1	known	missense	c.731	p.A244V	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Melcrt_ACTH_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Melcrt_ACTH_rcpt,prints_Mcort_rcpt_4,prints_GPCR_Rhodpsn,prints_Melancort_rcpt,prints_Cnbnoid_rcpt	-	no_errors	MC4R	HGNC	ENSG00000166603				86	0	0	51	43	45.7447
TMEM200C	0	genome.wustl.edu	37	18	5892007	5892007	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	5892007	5892007	C	T	SNP	TMEM200C	ENST00000383490	human	ensembl	74_37	-1	known	missense	c.56	p.R19H	0.985	pfam_DUF2371_TMEM200	pfam_DUF2371_TMEM200	-	no_errors	TMEM200C	HGNC	ENSG00000206432				38	0	0	23	9	28.125
CDH20	0	genome.wustl.edu	37	18	59195390	59195390	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	59195390	59195390	C	T	SNP	CDH20	ENST00000262717	human	ensembl	74_37	+1	known	missense	c.1208	p.A403V	0.500	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH20	HGNC	ENSG00000101542				217	1	0.458716	226	55	19.573
TNFRSF11A	0	genome.wustl.edu	37	18	60036437	60036437	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	60036437	60036437	C	T	SNP	TNFRSF11A	ENST00000586569	human	ensembl	74_37	+1	known	silent	c.1287	p.G429	0.000	NULL	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_11A,prints_TNFR_11	-	no_errors	TNFRSF11A	HGNC	ENSG00000141655				43	0	0	22	9	29.0323
SERPINB12	0	genome.wustl.edu	37	18	61225704	61225704	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	61225704	61225704	G	T	SNP	SERPINB12	ENST00000382768	human	ensembl	74_37	+1	novel	missense	c.288	p.E96D	0.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINB12	HGNC	ENSG00000166634				50	0	0	48	11	18.6441
SERPINB2	0	genome.wustl.edu	37	18	61569049	61569049	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	61569049	61569049	T	G	SNP	SERPINB2	ENST00000299502	human	ensembl	74_37	+1	known	missense	c.611	p.F204C	1.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINB2	HGNC	ENSG00000197632				109	0	0	113	28	19.8582
CDH7	0	genome.wustl.edu	37	18	63477140	63477140	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	63477140	63477140	G	A	SNP	CDH7	ENST00000323011	human	ensembl	74_37	+1	known	silent	c.411	p.S137	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH7	HGNC	ENSG00000081138				80	0	0	73	29	28.4314
CCDC102B	0	genome.wustl.edu	37	18	66513554	66513554	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	66513554	66513554	C	T	SNP	CCDC102B	ENST00000319445	human	ensembl	74_37	+1	known	missense	c.832	p.R278C	0.994	NULL	NULL	-	no_errors	CCDC102B	HGNC	ENSG00000150636				66	0	0	47	15	24.1935
RTTN	0	genome.wustl.edu	37	18	67727254	67727254	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	67727254	67727254	C	T	SNP	RTTN	ENST00000255674	human	ensembl	74_37	-1	known	missense	c.4772	p.R1591Q	0.000	NULL	superfamily_ARM-type_fold	-	no_errors	RTTN	HGNC	ENSG00000176225				50	0	0	61	12	16.4384
ENOSF1	0	genome.wustl.edu	37	18	677835	677835	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	677835	677835	G	A	SNP	ENOSF1	ENST00000340116	human	ensembl	74_37	-1	known	missense	c.977	p.A326V	1.000	NULL	pfam_Mandelate_racemase_C,pfam_Mandelate_racemase_N,smart_Mandelate_racemase_C	-	no_errors	ENOSF1	HGNC	ENSG00000132199				139	0	0	102	38	27.1429
RTTN	0	genome.wustl.edu	37	18	67860572	67860572	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	67860572	67860572	C	T	SNP	RTTN	ENST00000255674	human	ensembl	74_37	-1	known	missense	c.959	p.G320D	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	RTTN	HGNC	ENSG00000176225				61	0	0	56	10	15.1515
LOC101927188	0	genome.wustl.edu	37	18	6956445	6956445	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	6956445	6956445	G	A	SNP	LOC101927188	ENST00000584722	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-781P6.1	Clone_based_vega_gene	ENSG00000265069				18	0	0	10	11	52.381
LAMA1	0	genome.wustl.edu	37	18	6964747	6964747	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	6964747	6964747	G	A	SNP	LAMA1	ENST00000389658	human	ensembl	74_37	-1	known	silent	c.7251	p.G2417	0.114	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680				74	0	0	88	10	10.2041
LAMA1	0	genome.wustl.edu	37	18	7046313	7046313	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	7046313	7046313	G	A	SNP	LAMA1	ENST00000389658	human	ensembl	74_37	-1	known	silent	c.822	p.G274	0.991	pfam_EGF_laminin,smart_EGF_laminin	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680				103	0	0	80	57	41.6058
LAMA1	0	genome.wustl.edu	37	18	7049171	7049171	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	7049171	7049171	C	T	SNP	LAMA1	ENST00000389658	human	ensembl	74_37	-1	known	missense	c.674	p.R225H	1.000	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680				161	0	0	147	26	15.0289
CNDP2	0	genome.wustl.edu	37	18	72173240	72173240	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	72173240	72173240	C	T	SNP	CNDP2	ENST00000324262	human	ensembl	74_37	+1	known	nonsense	c.361	p.R121*	1.000	pfam_Peptidase_M20,pirsf_GSH_degradosome_DUG1	pfam_Peptidase_M20,pfam_Peptidase_M20_dimer,superfamily_Peptidase_M20_dimer,pirsf_GSH_degradosome_DUG1	-	no_errors	CNDP2	HGNC	ENSG00000133313				47	0	0	23	13	36.1111
TSHZ1	0	genome.wustl.edu	37	18	72999217	72999217	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	72999217	72999217	G	A	SNP	TSHZ1	ENST00000580243	human	ensembl	74_37	+1	known	missense	c.1855	p.A619T	0.901	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ1	HGNC	ENSG00000179981				27	0	0	16	8	33.3333
TSHZ1	0	genome.wustl.edu	37	18	72999371	72999371	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	72999371	72999371	C	T	SNP	TSHZ1	ENST00000580243	human	ensembl	74_37	+1	known	missense	c.2009	p.A670V	0.011	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ1	HGNC	ENSG00000179981				76	0	0	63	6	8.69565
TSHZ1	0	genome.wustl.edu	37	18	72999579	72999579	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	72999579	72999579	G	A	SNP	TSHZ1	ENST00000580243	human	ensembl	74_37	+1	known	silent	c.2217	p.E739	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ1	HGNC	ENSG00000179981				59	0	0	44	11	20
TSHZ1	0	genome.wustl.edu	37	18	72999867	72999867	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	72999867	72999867	C	T	SNP	TSHZ1	ENST00000580243	human	ensembl	74_37	+1	known	silent	c.2505	p.S835	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ1	HGNC	ENSG00000179981				64	0	0	69	6	8
ZNF516	0	genome.wustl.edu	37	18	74154862	74154862	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	74154862	74154862	G	A	SNP	ZNF516	ENST00000443185	human	ensembl	74_37	-1	known	missense	c.149	p.S50L	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF516	HGNC	ENSG00000101493				42	0	0	36	17	32.0755
ZNF236	0	genome.wustl.edu	37	18	74593430	74593430	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	74593430	74593430	A	G	SNP	ZNF236	ENST00000253159	human	ensembl	74_37	+1	known	missense	c.1373	p.E458G	0.988	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF236	HGNC	ENSG00000130856				110	0	0	83	40	32.5203
ATP9B	0	genome.wustl.edu	37	18	77037168	77037168	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	77037168	77037168	C	T	SNP	ATP9B	ENST00000426216	human	ensembl	74_37	+1	known	silent	c.1383	p.R461	0.794	superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP9B	HGNC	ENSG00000166377				93	0	0	92	5	5.15464
ATP9B	0	genome.wustl.edu	37	18	77090061	77090061	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	77090061	77090061	C	T	SNP	ATP9B	ENST00000426216	human	ensembl	74_37	+1	known	missense	c.1985	p.A662V	0.982	pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP9B	HGNC	ENSG00000166377				75	0	0	75	17	18.4783
ATP9B	0	genome.wustl.edu	37	18	77133950	77133950	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	77133950	77133950	C	T	SNP	ATP9B	ENST00000426216	human	ensembl	74_37	+1	known	silent	c.3123	p.H1041	0.950	tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP9B	HGNC	ENSG00000166377				88	0	0	91	10	9.90099
NFATC1	0	genome.wustl.edu	37	18	77246433	77246433	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	77246433	77246433	G	A	SNP	NFATC1	ENST00000427363	human	ensembl	74_37	+1	known	missense	c.2278	p.A760T	0.002	NULL	pfam_RHD,pfam_IPT,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT,pfscan_RHD,prints_NFAT	-	no_errors	NFATC1	HGNC	ENSG00000131196				81	0	0	59	12	16.9014
CTDP1	0	genome.wustl.edu	37	18	77474877	77474877	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	77474877	77474877	G	A	SNP	CTDP1	ENST00000299543	human	ensembl	74_37	+1	known	missense	c.1417	p.A473T	0.000	NULL	pfam_FCP1_C,pfam_NIF,superfamily_HAD-like_dom,superfamily_BRCT_dom,superfamily_Single_hybrid_motif,smart_NIF,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_NIF,tigrfam_FCP1_euk	-	no_errors	CTDP1	HGNC	ENSG00000060069				10	0	0	4	5	55.5556
CTDP1	0	genome.wustl.edu	37	18	77475079	77475079	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	77475079	77475079	G	C	SNP	CTDP1	ENST00000299543	human	ensembl	74_37	+1	known	missense	c.1619	p.G540A	0.999	NULL	pfam_FCP1_C,pfam_NIF,superfamily_HAD-like_dom,superfamily_BRCT_dom,superfamily_Single_hybrid_motif,smart_NIF,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_NIF,tigrfam_FCP1_euk	-	no_errors	CTDP1	HGNC	ENSG00000060069				19	0	0	21	3	12.5
KCNG2	0	genome.wustl.edu	37	18	77659090	77659090	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	77659090	77659090	C	T	SNP	KCNG2	ENST00000316249	human	ensembl	74_37	+1	known	silent	c.675	p.C225	0.998	pfam_Ion_trans_dom,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNG2	HGNC	ENSG00000178342				24	0	0	17	6	26.087
PQLC1	0	genome.wustl.edu	37	18	77703340	77703340	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	77703340	77703340	C	T	SNP	PQLC1	ENST00000397778	human	ensembl	74_37	-1	known	missense	c.326	p.R109H	0.999	NULL	smart_CTNS	-	no_errors	PQLC1	HGNC	ENSG00000122490				125	0	0	111	24	17.7778
RBFA	0	genome.wustl.edu	37	18	77797403	77797403	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	77797403	77797403	G	A	SNP	RBFA	ENST00000306735	human	ensembl	74_37	+1	known	missense	c.275	p.R92H	0.905	superfamily_Ribosome-bd_facA_dom	pfam_Ribosome-bd_facA,superfamily_Ribosome-bd_facA_dom	-	no_errors	RBFA	HGNC	ENSG00000101546				108	1	0.917431	111	6	5.12821
ADNP2	0	genome.wustl.edu	37	18	77894583	77894583	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	77894583	77894583	C	T	SNP	ADNP2	ENST00000262198	human	ensembl	74_37	+1	known	silent	c.1287	p.V429	0.923	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ADNP2	HGNC	ENSG00000101544				62	0	0	63	5	7.35294
ADNP2	0	genome.wustl.edu	37	18	77896106	77896106	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	77896106	77896106	G	A	SNP	ADNP2	ENST00000262198	human	ensembl	74_37	+1	known	missense	c.2810	p.R937H	0.984	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ADNP2	HGNC	ENSG00000101544				92	0	0	77	7	8.33333
PTPRM	0	genome.wustl.edu	37	18	8343455	8343455	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	8343455	8343455	G	A	SNP	PTPRM	ENST00000400060	human	ensembl	74_37	+1	known	silent	c.2994	p.R998	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRM	HGNC	ENSG00000173482				106	0	0	57	64	52.8926
SOGA2	0	genome.wustl.edu	37	18	8720396	8720396	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	8720396	8720396	G	A	SNP	SOGA2	ENST00000359865	human	ensembl	74_37	+1	known	missense	c.259	p.A87T	0.104	NULL	pfam_SOGA	-	no_errors	SOGA2	HGNC	ENSG00000168502				106	0	0	110	11	9.09091
TXNDC2	0	genome.wustl.edu	37	18	9886245	9886245	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	9886245	9886245	G	A	SNP	TXNDC2	ENST00000306084	human	ensembl	74_37	+1	known	missense	c.74	p.G25D	0.000	NULL	pfam_Thioredoxin_domain,pfam_Glutenin,superfamily_Thioredoxin-like_fold	-	no_errors	TXNDC2	HGNC	ENSG00000168454				55	0	0	55	4	6.77966
GRIN3B	0	genome.wustl.edu	37	19	1005443	1005443	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	1005443	1005443	T	A	SNP	GRIN3B	ENST00000234389	human	ensembl	74_37	+1	known	missense	c.1943	p.L648H	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,prints_NMDA_rcpt	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN3B	HGNC	ENSG00000116032				44	0	0	27	13	32.5
COL5A3	0	genome.wustl.edu	37	19	10073525	10073525	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	10073525	10073525	G	A	SNP	COL5A3	ENST00000264828	human	ensembl	74_37	-1	known	silent	c.4821	p.G1607	0.965	pfam_Fib_collagen_C,smart_Fib_collagen_C	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A3	HGNC	ENSG00000080573				21	0	0	21	4	16
ANGPTL6	0	genome.wustl.edu	37	19	10203294	10203294	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	10203294	10203294	C	T	SNP	ANGPTL6	ENST00000253109	human	ensembl	74_37	-1	known	missense	c.1384	p.A462T	0.259	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	ANGPTL6	HGNC	ENSG00000130812				102	0	0	81	12	12.9032
PPAN-P2RY11	0	genome.wustl.edu	37	19	10221526	10221526	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	10221526	10221526	C	T	SNP	PPAN-P2RY11	ENST00000393796	human	ensembl	74_37	+1	known	silent	c.1185	p.G395	0.992	NULL	pfam_Brix,pfam_GPCR_Rhodpsn,superfamily_Anticodon-bd,smart_Brix,prints_GPCR_Rhodpsn,pfscan_Brix,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	PPAN-P2RY11	HGNC	ENSG00000243207				81	0	0	59	15	20.2703
DNMT1	0	genome.wustl.edu	37	19	10252856	10252856	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	10252856	10252856	C	T	SNP	DNMT1	ENST00000359526	human	ensembl	74_37	-1	known	missense	c.3157	p.A1053T	0.276	pirsf_DNA_C5-MeTrfase_1_euk,pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	pirsf_DNA_C5-MeTrfase_1_euk,pfam_C5_MeTfrase,pfam_BAH_dom,pfam_Cytosine_MeTrfase1_RFD,pfam_DMAP1-bd,pfam_Znf_CXXC,smart_BAH_dom,prints_C5_MeTfrase,pfscan_BAH_dom,pfscan_Znf_CXXC	-	no_errors	DNMT1	HGNC	ENSG00000130816				60	0	0	55	11	16.6667
MRPL4	0	genome.wustl.edu	37	19	10367487	10367487	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	10367487	10367487	C	T	SNP	MRPL4	ENST00000253099	human	ensembl	74_37	+1	known	missense	c.431	p.P144L	1.000	pfam_Ribosomal_L4/L1e,superfamily_Ribosomal_L4_dom,tigrfam_Ribosomal_L4/L1e_bac-type	pfam_Ribosomal_L4/L1e,superfamily_Ribosomal_L4_dom,tigrfam_Ribosomal_L4/L1e_bac-type	-	no_errors	MRPL4	HGNC	ENSG00000105364				30	0	0	21	7	25
MRPL4	0	genome.wustl.edu	37	19	10370451	10370451	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	10370451	10370451	G	A	SNP	MRPL4	ENST00000253099	human	ensembl	74_37	+1	known	missense	c.898	p.A300T	0.000	NULL	pfam_Ribosomal_L4/L1e,superfamily_Ribosomal_L4_dom,tigrfam_Ribosomal_L4/L1e_bac-type	-	no_errors	MRPL4	HGNC	ENSG00000105364				29	0	0	14	16	53.3333
KEAP1	0	genome.wustl.edu	37	19	10610610	10610610	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	10610610	10610610	C	T	SNP	KEAP1	ENST00000171111	human	ensembl	74_37	-1	known	missense	c.100	p.A34T	0.997	pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KEAP1	HGNC	ENSG00000079999				81	0	0	48	15	23.8095
ATG4D	0	genome.wustl.edu	37	19	10663693	10663693	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	10663693	10663693	C	T	SNP	ATG4D	ENST00000309469	human	ensembl	74_37	+1	known	missense	c.1375	p.R459W	0.995	NULL	pfam_Peptidase_C54	-	no_errors	ATG4D	HGNC	ENSG00000130734				28	0	0	19	6	24
CDKN2D	0	genome.wustl.edu	37	19	10678072	10678072	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	10678072	10678072	C	T	SNP	CDKN2D	ENST00000335766	human	ensembl	74_37	-1	known	missense	c.163	p.A55T	0.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	CDKN2D	HGNC	ENSG00000129355				135	0	0	88	33	27.2727
ILF3	0	genome.wustl.edu	37	19	10793873	10793873	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	10793873	10793873	C	T	SNP	ILF3	ENST00000449870	human	ensembl	74_37	+1	known	missense	c.1621	p.R541C	1.000	pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,pfscan_dsRNA-bd_dom	pfam_DZF,pfam_dsRNA-bd_dom,smart_DZF,smart_dsRNA-bd_dom,pfscan_dsRNA-bd_dom	-	no_errors	ILF3	HGNC	ENSG00000129351				58	0	0	58	9	13.4328
YIPF2	0	genome.wustl.edu	37	19	11034602	11034602	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	11034602	11034602	C	T	SNP	YIPF2	ENST00000253031	human	ensembl	74_37	-1	known	nonsense	c.558	p.W186*	1.000	pfam_Yip1	pfam_Yip1	-	no_errors	YIPF2	HGNC	ENSG00000130733				8	0	0	11	5	31.25
RGL3	0	genome.wustl.edu	37	19	11505125	11505125	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	11505125	11505125	G	A	SNP	RGL3	ENST00000393423	human	ensembl	74_37	-1	known	missense	c.2104	p.R702W	0.788	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc	pfam_RasGRF_CDC25,pfam_Ras-assoc,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RGL3	HGNC	ENSG00000205517				59	0	0	44	15	25.4237
CNN1	0	genome.wustl.edu	37	19	11658702	11658702	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	11658702	11658702	C	T	SNP	CNN1	ENST00000252456	human	ensembl	74_37	+1	known	missense	c.481	p.R161W	0.959	superfamily_CH-domain,prints_SM22_calponin	pfam_Calponin_repeat,pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain,pfscan_Calponin_repeat,prints_SM22_calponin,prints_Calponin	-	no_errors	CNN1	HGNC	ENSG00000130176				41	0	0	25	14	35.8974
ZNF441	0	genome.wustl.edu	37	19	11891710	11891710	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	11891710	11891710	G	A	SNP	ZNF441	ENST00000357901	human	ensembl	74_37	+1	known	silent	c.1071	p.T357	0.033	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF441	HGNC	ENSG00000197044				168	0	0	133	8	5.67376
ZNF440	0	genome.wustl.edu	37	19	11942881	11942881	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	11942881	11942881	G	A	SNP	ZNF440	ENST00000304060	human	ensembl	74_37	+1	known	missense	c.890	p.R297H	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF440	HGNC	ENSG00000171295				112	0	0	94	18	16.0714
ZNF439	0	genome.wustl.edu	37	19	11978739	11978739	+	Silent	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	11978739	11978739	T	C	SNP	ZNF439	ENST00000304030	human	ensembl	74_37	+1	known	silent	c.855	p.C285	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF439	HGNC	ENSG00000171291				117	0	0	76	22	22.449
ZNF763	0	genome.wustl.edu	37	19	12089891	12089891	+	Silent	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	12089891	12089891	A	G	SNP	ZNF763	ENST00000538752	human	ensembl	74_37	+1	known	silent	c.1212	p.T404	0.023	NULL	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF763	HGNC	ENSG00000197054				118	1	0.840336	113	10	8.13008
CIRBP	0	genome.wustl.edu	37	19	1272348	1272348	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	1272348	1272348	G	A	SNP	CIRBP	ENST00000444172	human	ensembl	74_37	+1	known	missense	c.641	p.R214H	0.119	NULL	NULL	-	no_errors	CIRBP	HGNC	ENSG00000099622				58	0	0	46	9	16.3636
ZNF791	0	genome.wustl.edu	37	19	12739704	12739704	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	12739704	12739704	C	T	SNP	ZNF791	ENST00000343325	human	ensembl	74_37	+1	known	missense	c.1361	p.A454V	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF791	HGNC	ENSG00000173875				109	0	0	88	7	7.36842
WDR83OS	0	genome.wustl.edu	37	19	12779185	12779185	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	12779185	12779185	C	T	SNP	WDR83OS	ENST00000596731	human	ensembl	74_37	-1	known	silent	c.309	p.T103	0.967	pfam_UPF0139	pfam_UPF0139	-	no_errors	WDR83OS	HGNC	ENSG00000105583				14	0	0	7	4	36.3636
TNPO2	0	genome.wustl.edu	37	19	12812201	12812201	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	12812201	12812201	G	A	SNP	TNPO2	ENST00000425528	human	ensembl	74_37	-1	known	missense	c.2653	p.P885S	1.000	superfamily_ARM-type_fold	pfam_HEAT,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	TNPO2	HGNC	ENSG00000105576				60	0	0	34	22	39.2857
TNPO2	0	genome.wustl.edu	37	19	12826457	12826457	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	12826457	12826457	T	G	SNP	TNPO2	ENST00000425528	human	ensembl	74_37	-1	known	missense	c.422	p.N141T	1.000	superfamily_ARM-type_fold	pfam_HEAT,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	TNPO2	HGNC	ENSG00000105576				14	0	0	7	7	50
RNASEH2A	0	genome.wustl.edu	37	19	12924174	12924174	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	12924174	12924174	T	C	SNP	RNASEH2A	ENST00000221486	human	ensembl	74_37	+1	known	missense	c.794	p.L265P	0.000	NULL	pfam_RNase_HII/HIII_dom,superfamily_RNaseH-like_dom,tigrfam_RNase_H2_suA	-	no_errors	RNASEH2A	HGNC	ENSG00000104889				53	0	0	38	12	24
GCDH	0	genome.wustl.edu	37	19	13010517	13010517	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	13010517	13010517	T	G	SNP	GCDH	ENST00000457854	human	ensembl	74_37	+1	known	missense	c.1247	p.V416G	0.000	pfam_Acyl-CoA_DH_2_C	pfam_AcylCoA_DH/ox_N,pfam_AcylCo_DH/oxidase_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_DH_2_C,superfamily_AcylCoA_DH/oxidase_NM_dom,superfamily_AcylCo_DH/oxidase_C	-	no_errors	GCDH	HGNC	ENSG00000105607				63	0	0	54	6	10
CC2D1A	0	genome.wustl.edu	37	19	14034522	14034522	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	14034522	14034522	C	T	SNP	CC2D1A	ENST00000318003	human	ensembl	74_37	+1	known	missense	c.1838	p.A613V	0.995	NULL	pfam_C2_dom,superfamily_C2_dom,smart_DM14,smart_C2_dom	-	no_errors	CC2D1A	HGNC	ENSG00000132024				62	0	0	58	5	7.93651
LPHN1	0	genome.wustl.edu	37	19	14266322	14266322	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	14266322	14266322	G	A	SNP	LPHN1	ENST00000340736	human	ensembl	74_37	-1	known	missense	c.3158	p.A1053V	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like	-	no_errors	LPHN1	HGNC	ENSG00000072071				43	0	0	28	9	24.3243
PKN1	0	genome.wustl.edu	37	19	14554393	14554393	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	14554393	14554393	C	T	SNP	PKN1	ENST00000342216	human	ensembl	74_37	+1	known	missense	c.452	p.A151V	1.000	pfam_HR1_rho-bd,superfamily_HR1_rho-bd,smart_HR1_rho-bd	pfam_Prot_kinase_dom,pfam_HR1_rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,superfamily_C2_dom,smart_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom	-	no_errors	PKN1	HGNC	ENSG00000123143				29	0	0	20	7	25.9259
APC2	0	genome.wustl.edu	37	19	1460307	1460307	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	1460307	1460307	C	T	SNP	APC2	ENST00000233607	human	ensembl	74_37	+1	known	silent	c.1431	p.D477	0.647	superfamily_ARM-type_fold,smart_Armadillo	pfam_APC_basic_dom,pfam_APC_dom,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_SAMP,superfamily_ARM-type_fold,superfamily_Prefoldin,smart_Armadillo	-	no_errors	APC2	HGNC	ENSG00000115266				50	0	0	31	19	38
ZNF333	0	genome.wustl.edu	37	19	14815942	14815942	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	14815942	14815942	G	A	SNP	ZNF333	ENST00000292530	human	ensembl	74_37	+1	known	missense	c.383	p.R128Q	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF333	HGNC	ENSG00000160961				54	0	0	27	8	22.8571
EMR2	0	genome.wustl.edu	37	19	14857720	14857720	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	14857720	14857720	G	A	SNP	EMR2	ENST00000315576	human	ensembl	74_37	-1	known	silent	c.2079	p.C693	0.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfam_EGF-like_Ca-bd_dom,pfam_GPS_dom,pfam_EG-like_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_CD97,prints_GPCR_2_EMR1_rcpt,prints_GPCR_2_secretin-like	-	no_errors	EMR2	HGNC	ENSG00000127507				32	0	0	28	4	12.5
OR7C1	0	genome.wustl.edu	37	19	14910601	14910601	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	14910601	14910601	G	A	SNP	OR7C1	ENST00000248073	human	ensembl	74_37	-1	known	silent	c.348	p.T116	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR7C1	HGNC	ENSG00000127530				58	0	0	47	11	18.9655
CASP14	0	genome.wustl.edu	37	19	15166245	15166245	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	15166245	15166245	C	T	SNP	CASP14	ENST00000221740	human	ensembl	74_37	+1	known	silent	c.525	p.Y175	0.983	pfam_Pept_C14_caspase,smart_Pept_C14A_p45_core,pfscan_Pept_C14_p10	pfam_Pept_C14_caspase,smart_Pept_C14A_p45_core,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14A_p45_core	-	no_errors	CASP14	HGNC	ENSG00000105141				133	0	0	80	19	19.1919
AKAP8	0	genome.wustl.edu	37	19	15472567	15472567	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	15472567	15472567	C	T	SNP	AKAP8	ENST00000269701	human	ensembl	74_37	-1	known	missense	c.1369	p.A457T	0.000	pfam_AKAP95	pfam_AKAP95	-	no_errors	AKAP8	HGNC	ENSG00000105127				97	0	0	82	8	8.88889
AKAP8L	0	genome.wustl.edu	37	19	15511828	15511828	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	15511828	15511828	G	A	SNP	AKAP8L	ENST00000397410	human	ensembl	74_37	-1	known	silent	c.843	p.G281	0.000	NULL	pfam_AKAP95	-	no_errors	AKAP8L	HGNC	ENSG00000011243				18	0	0	25	8	24.2424
CYP4F3	0	genome.wustl.edu	37	19	15759982	15759982	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	15759982	15759982	C	T	SNP	CYP4F3	ENST00000221307	human	ensembl	74_37	+1	known	missense	c.538	p.L180F	0.925	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F3	HGNC	ENSG00000186529				36	0	0	23	10	30.303
CYP4F12	0	genome.wustl.edu	37	19	15807839	15807839	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	15807839	15807839	C	T	SNP	CYP4F12	ENST00000324632	human	ensembl	74_37	+1	known	missense	c.1519	p.R507C	1.000	superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F12	HGNC	ENSG00000186204				46	0	0	23	4	14.8148
NWD1	0	genome.wustl.edu	37	19	16918398	16918398	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	16918398	16918398	C	T	SNP	NWD1	ENST00000379808	human	ensembl	74_37	+1	known	silent	c.3738	p.G1246	0.037	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NWD1	HGNC	ENSG00000188039				133	0	0	101	34	25.1852
MYO9B	0	genome.wustl.edu	37	19	17295741	17295741	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	17295741	17295741	C	T	SNP	MYO9B	ENST00000594824	human	ensembl	74_37	+1	known	missense	c.2441	p.S814F	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO9B	HGNC	ENSG00000099331				120	0	0	77	23	23
USHBP1	0	genome.wustl.edu	37	19	17362446	17362446	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	17362446	17362446	G	A	SNP	USHBP1	ENST00000252597	human	ensembl	74_37	-1	known	nonsense	c.1867	p.R623*	0.074	NULL	pfam_USH1C-bd_PDZ_domain	-	no_errors	USHBP1	HGNC	ENSG00000130307				87	0	0	50	23	31.5068
ANO8	0	genome.wustl.edu	37	19	17444229	17444229	+	Splice_Site	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	17444229	17444229	G	A	SNP	ANO8	ENST00000159087	human	ensembl	74_37	-1	known	splice_site	c.350+2	e3+2	1.000	-	-	-	no_errors	ANO8	HGNC	ENSG00000074855				73	0	0	42	15	26.3158
ANO8	0	genome.wustl.edu	37	19	17444267	17444267	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	17444267	17444267	C	T	SNP	ANO8	ENST00000159087	human	ensembl	74_37	-1	known	missense	c.314	p.R105H	0.737	NULL	pfam_Anoctamin	-	no_errors	ANO8	HGNC	ENSG00000074855				91	0	0	50	11	18.0328
ANO8	0	genome.wustl.edu	37	19	17444269	17444269	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	17444269	17444269	C	T	SNP	ANO8	ENST00000159087	human	ensembl	74_37	-1	known	silent	c.312	p.T104	0.727	NULL	pfam_Anoctamin	-	no_errors	ANO8	HGNC	ENSG00000074855				93	0	0	49	11	18.3333
PLVAP	0	genome.wustl.edu	37	19	17487766	17487766	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	17487766	17487766	C	T	SNP	PLVAP	ENST00000252590	human	ensembl	74_37	-1	known	missense	c.332	p.R111H	1.000	pfam_PV-1	pfam_PV-1	-	no_errors	PLVAP	HGNC	ENSG00000130300				32	0	0	21	5	19.2308
SLC27A1	0	genome.wustl.edu	37	19	17615413	17615413	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	17615413	17615413	G	A	SNP	SLC27A1	ENST00000252595	human	ensembl	74_37	+1	known	missense	c.1933	p.A645T	0.001	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	SLC27A1	HGNC	ENSG00000130304				24	0	0	15	11	42.3077
COLGALT1	0	genome.wustl.edu	37	19	17678290	17678290	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	17678290	17678290	G	A	SNP	COLGALT1	ENST00000252599	human	ensembl	74_37	+1	known	missense	c.565	p.A189T	1.000	NULL	pfam_Glyco_trans_25	-	no_errors	COLGALT1	HGNC	ENSG00000130309				39	0	0	30	9	23.0769
SNORA68	0	genome.wustl.edu	37	19	17973433	17973433	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	17973433	17973433	C	T	SNP	SNORA68	ENST00000384437	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SNORA68	HGNC	ENSG00000207166				251	0	0	152	52	25.4902
SLC5A5	0	genome.wustl.edu	37	19	17983460	17983460	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	17983460	17983460	G	A	SNP	SLC5A5	ENST00000222248	human	ensembl	74_37	+1	known	missense	c.332	p.R111H	1.000	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A5	HGNC	ENSG00000105641				23	0	0	9	3	25
KCNN1	0	genome.wustl.edu	37	19	18092607	18092607	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	18092607	18092607	C	T	SNP	KCNN1	ENST00000222249	human	ensembl	74_37	+1	known	silent	c.588	p.C196	0.991	pfam_K_chnl_Ca-activ_SK,prints_K_chnl_Ca-activ_SK	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_2pore_dom_K_chnl_dom,superfamily_CaM-bd_dom,prints_K_chnl_Ca-activ_SK	-	no_errors	KCNN1	HGNC	ENSG00000105642				9	0	0	11	4	26.6667
PIK3R2	0	genome.wustl.edu	37	19	18273013	18273013	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	18273013	18273013	G	A	SNP	PIK3R2	ENST00000222254	human	ensembl	74_37	+1	known	silent	c.903	p.A301	0.650	NULL	pfam_SH2,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_SH3_domain,smart_RhoGAP_dom,smart_SH2,pfscan_SH2,pfscan_SH3_domain,pfscan_RhoGAP_dom,prints_PI3kinase_P85,prints_SH2	-	no_errors	PIK3R2	HGNC	ENSG00000105647				17	0	0	14	7	33.3333
COMP	0	genome.wustl.edu	37	19	18899035	18899035	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	18899035	18899035	C	T	SNP	COMP	ENST00000222271	human	ensembl	74_37	-1	known	missense	c.961	p.V321I	1.000	pfam_Thrombospondin_3-like_rpt	pfam_Thrombospondin_C,pfam_EGF-like_Ca-bd_dom,pfam_Thbs/COMP_coiled-coil,pfam_Thrombospondin_3-like_rpt,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	COMP	HGNC	ENSG00000105664				26	0	0	11	3	21.4286
UPF1	0	genome.wustl.edu	37	19	18974986	18974986	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	18974986	18974986	G	A	SNP	UPF1	ENST00000599848	human	ensembl	74_37	+1	known	missense	c.2816	p.R939H	1.000	NULL	pfam_RNA-helicase_UPF1_UPF2-interct,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase	-	no_errors	UPF1	HGNC	ENSG00000005007				96	0	0	68	24	26.087
DDX49	0	genome.wustl.edu	37	19	19033426	19033426	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	19033426	19033426	G	A	SNP	DDX49	ENST00000247003	human	ensembl	74_37	+1	known	missense	c.649	p.E217K	1.000	superfamily_P-loop_NTPase,smart_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX49	HGNC	ENSG00000105671				32	0	0	24	11	31.4286
SUGP2	0	genome.wustl.edu	37	19	19112441	19112441	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	19112441	19112441	C	T	SNP	SUGP2	ENST00000337018	human	ensembl	74_37	-1	known	missense	c.2972	p.R991H	0.987	NULL	pfam_Surp,pfam_G_patch_dom,superfamily_Surp,smart_Surp,smart_G_patch_dom,pfscan_Surp,pfscan_G_patch_dom	-	no_errors	SUGP2	HGNC	ENSG00000064607				55	0	0	47	18	27.6923
ARMC6	0	genome.wustl.edu	37	19	19153682	19153682	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	19153682	19153682	G	A	SNP	ARMC6	ENST00000392336	human	ensembl	74_37	+1	known	silent	c.192	p.S64	0.044	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMC6	HGNC	ENSG00000105676				64	0	0	34	15	30.6122
NCAN	0	genome.wustl.edu	37	19	19330022	19330022	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	19330022	19330022	G	A	SNP	NCAN	ENST00000252575	human	ensembl	74_37	+1	known	silent	c.372	p.T124	0.939	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Link,pfam_C-type_lectin,pfam_Sushi_SCR_CCP,pfam_Ig_V-set,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Link,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link,prints_AntifreezeII	-	no_errors	NCAN	HGNC	ENSG00000130287				20	0	0	13	5	27.7778
NCAN	0	genome.wustl.edu	37	19	19337827	19337827	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	19337827	19337827	C	T	SNP	NCAN	ENST00000252575	human	ensembl	74_37	+1	known	silent	c.1605	p.G535	0.001	NULL	pfam_Link,pfam_C-type_lectin,pfam_Sushi_SCR_CCP,pfam_Ig_V-set,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Link,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link,prints_AntifreezeII	-	no_errors	NCAN	HGNC	ENSG00000130287				33	0	0	21	11	34.375
HAPLN4	0	genome.wustl.edu	37	19	19369400	19369400	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	19369400	19369400	C	T	SNP	HAPLN4	ENST00000291481	human	ensembl	74_37	-1	known	missense	c.749	p.R250H	1.000	pfam_Link,superfamily_C-type_lectin_fold,smart_Link,pfscan_Link	pfam_Link,pfam_Ig_V-set,superfamily_C-type_lectin_fold,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Link,pfscan_Link,pfscan_Ig-like_dom,prints_Link	-	no_errors	HAPLN4	HGNC	ENSG00000187664				26	0	0	14	6	30
MAU2	0	genome.wustl.edu	37	19	19452166	19452166	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	19452166	19452166	C	T	SNP	MAU2	ENST00000262815	human	ensembl	74_37	+1	known	missense	c.685	p.R229C	0.996	pfam_Cohesin_loading_factor	pfam_Cohesin_loading_factor,smart_TPR_repeat	-	no_errors	MAU2	HGNC	ENSG00000129933				33	0	0	17	6	26.087
ZNF253	0	genome.wustl.edu	37	19	19989293	19989293	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	19989293	19989293	C	T	SNP	ZNF253	ENST00000589717	human	ensembl	74_37	+1	known	missense	c.7	p.P3S	0.003	superfamily_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF253	HGNC	ENSG00000256771				180	0	0	108	29	21.1679
ZNF626	0	genome.wustl.edu	37	19	20807894	20807894	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	20807894	20807894	G	A	SNP	ZNF626	ENST00000601440	human	ensembl	74_37	-1	known	silent	c.789	p.G263	0.883	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF626	HGNC	ENSG00000188171				115	0	0	108	11	9.2437
AP3D1	0	genome.wustl.edu	37	19	2114816	2114816	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	2114816	2114816	G	A	SNP	AP3D1	ENST00000355272	human	ensembl	74_37	-1	known	missense	c.2354	p.A785V	1.000	pfam_BLV_receptor,pirsf_AP3_complex_dsu	pfam_BLV_receptor,pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_complex_dsu	-	no_errors	AP3D1	HGNC	ENSG00000065000				70	0	0	52	10	16.129
ZNF208	0	genome.wustl.edu	37	19	22156328	22156328	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	22156328	22156328	C	T	SNP	ZNF208	ENST00000397126	human	ensembl	74_37	-1	novel	missense	c.1508	p.G503D	0.941	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF208	HGNC	ENSG00000160321				85	0	0	81	17	17.3469
ZNF729	0	genome.wustl.edu	37	19	22496605	22496605	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	22496605	22496605	C	T	SNP	ZNF729	ENST00000601693	human	ensembl	74_37	+1	novel	missense	c.386	p.A129V	0.107	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF729	HGNC	ENSG00000196350				25	0	0	25	4	13.7931
PPAP2C	0	genome.wustl.edu	37	19	282274	282274	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	282274	282274	G	A	SNP	PPAP2C	ENST00000327790	human	ensembl	74_37	-1	known	missense	c.640	p.R214W	0.748	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	PPAP2C	HGNC	ENSG00000141934				38	0	0	29	7	19.4444
ZNF554	0	genome.wustl.edu	37	19	2834253	2834253	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	2834253	2834253	C	T	SNP	ZNF554	ENST00000317243	human	ensembl	74_37	+1	known	silent	c.1020	p.S340	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF554	HGNC	ENSG00000172006				99	0	0	65	22	25.2874
ZNF555	0	genome.wustl.edu	37	19	2852711	2852711	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	2852711	2852711	T	A	SNP	ZNF555	ENST00000334241	human	ensembl	74_37	+1	known	missense	c.648	p.N216K	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF555	HGNC	ENSG00000186300				137	0	0	68	19	21.8391
ZNF555	0	genome.wustl.edu	37	19	2852932	2852932	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	2852932	2852932	C	T	SNP	ZNF555	ENST00000334241	human	ensembl	74_37	+1	known	missense	c.869	p.A290V	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF555	HGNC	ENSG00000186300				90	0	0	57	22	27.8481
CCNE1	0	genome.wustl.edu	37	19	30313366	30313366	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	30313366	30313366	C	T	SNP	CCNE1	ENST00000262643	human	ensembl	74_37	+1	known	silent	c.966	p.C322	0.001	pfam_Cyclin_C-dom,superfamily_Cyclin-like,pirsf_Cyclin_A/B/D/E	pfam_Cyclin_N,pfam_Cyclin_C-dom,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	-	no_errors	CCNE1	HGNC	ENSG00000105173				157	0	0	141	22	13.4969
CCNE1	0	genome.wustl.edu	37	19	30313453	30313453	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	30313453	30313453	C	T	SNP	CCNE1	ENST00000262643	human	ensembl	74_37	+1	known	silent	c.1053	p.G351	0.140	pfam_Cyclin_C-dom,pirsf_Cyclin_A/B/D/E	pfam_Cyclin_N,pfam_Cyclin_C-dom,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	-	no_errors	CCNE1	HGNC	ENSG00000105173				241	0	0	167	59	26.1062
ZNF536	0	genome.wustl.edu	37	19	30935717	30935717	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	30935717	30935717	C	T	SNP	ZNF536	ENST00000355537	human	ensembl	74_37	+1	known	silent	c.1248	p.G416	0.948	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF536	HGNC	ENSG00000198597				32	0	0	25	11	30.5556
MIER2	0	genome.wustl.edu	37	19	312230	312230	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	312230	312230	C	T	SNP	MIER2	ENST00000264819	human	ensembl	74_37	-1	known	missense	c.850	p.A284T	1.000	superfamily_Homeodomain-like,pfscan_ELM2_dom	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	MIER2	HGNC	ENSG00000105556				58	0	0	22	8	26.6667
SLC7A9	0	genome.wustl.edu	37	19	33355554	33355554	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	33355554	33355554	G	A	SNP	SLC7A9	ENST00000023064	human	ensembl	74_37	-1	known	silent	c.216	p.C72	1.000	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1	-	no_errors	SLC7A9	HGNC	ENSG00000021488				58	0	0	40	11	21.5686
GPATCH1	0	genome.wustl.edu	37	19	33602674	33602674	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	33602674	33602674	C	T	SNP	GPATCH1	ENST00000170564	human	ensembl	74_37	+1	known	nonsense	c.1630	p.R544*	1.000	NULL	pfam_DUF1604,pfam_G_patch_dom,superfamily_C-type_lectin_fold,pfscan_G_patch_dom	-	no_errors	GPATCH1	HGNC	ENSG00000076650				88	0	0	53	20	27.3973
PEPD	0	genome.wustl.edu	37	19	34002042	34002042	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	34002042	34002042	G	A	SNP	PEPD	ENST00000244137	human	ensembl	74_37	-1	known	missense	c.221	p.A74V	0.995	pfam_Aminopep_P_N	pfam_Pept_M24_structural-domain,pfam_Aminopep_P_N,superfamily_Pept_M24_structural-domain	-	no_errors	PEPD	HGNC	ENSG00000124299				37	0	0	25	8	24.2424
CHST8	0	genome.wustl.edu	37	19	34263263	34263263	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	34263263	34263263	C	T	SNP	CHST8	ENST00000262622	human	ensembl	74_37	+1	known	silent	c.570	p.H190	1.000	pfam_Sulfotransferase	pfam_Sulfotransferase	-	no_errors	CHST8	HGNC	ENSG00000124302				29	0	0	18	7	28
CHST8	0	genome.wustl.edu	37	19	34263612	34263612	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	34263612	34263612	C	T	SNP	CHST8	ENST00000262622	human	ensembl	74_37	+1	known	missense	c.919	p.R307C	0.690	pfam_Sulfotransferase	pfam_Sulfotransferase	-	no_errors	CHST8	HGNC	ENSG00000124302				35	0	0	19	7	26.9231
GPI	0	genome.wustl.edu	37	19	34856175	34856175	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	34856175	34856175	G	A	SNP	GPI	ENST00000415930	human	ensembl	74_37	+1	known	missense	c.121	p.A41T	1.000	NULL	pfam_G6P_Isomerase,prints_G6P_Isomerase	-	no_errors	GPI	HGNC	ENSG00000105220				17	0	0	10	4	28.5714
DOHH	0	genome.wustl.edu	37	19	3496805	3496805	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	3496805	3496805	G	A	SNP	DOHH	ENST00000250937	human	ensembl	74_37	-1	known	missense	c.8	p.T3M	0.954	NULL	pfam_PBS_lyase_HEAT,superfamily_ARM-type_fold,smart_PBS_lyase_HEAT,pfscan_HEAT_type_2	-	no_errors	DOHH	HGNC	ENSG00000129932				29	0	0	24	5	17.2414
ZNF599	0	genome.wustl.edu	37	19	35250659	35250659	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	35250659	35250659	C	T	SNP	ZNF599	ENST00000329285	human	ensembl	74_37	-1	known	silent	c.1047	p.T349	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF599	HGNC	ENSG00000153896				68	0	0	56	6	9.67742
ZNF30	0	genome.wustl.edu	37	19	35434572	35434572	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	35434572	35434572	C	T	SNP	ZNF30	ENST00000303586	human	ensembl	74_37	+1	known	silent	c.705	p.C235	0.049	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF30	HGNC	ENSG00000168661				50	0	0	32	6	15.7895
TBXA2R	0	genome.wustl.edu	37	19	3600360	3600360	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	3600360	3600360	C	T	SNP	TBXA2R	ENST00000411851	human	ensembl	74_37	-1	known	silent	c.273	p.A91	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Thbox_rcpt,prints_Prostanoid_rcpt,prints_GPCR_Rhodpsn	-	no_errors	TBXA2R	HGNC	ENSG00000006638				26	0	0	9	4	30.7692
ATP4A	0	genome.wustl.edu	37	19	36050941	36050941	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	36050941	36050941	G	A	SNP	ATP4A	ENST00000262623	human	ensembl	74_37	-1	known	silent	c.822	p.D274	1.000	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Na/K_IIC	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATPase_P-typ_H/K-transp_N,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP4A	HGNC	ENSG00000105675				42	0	0	32	8	20
RBM42	0	genome.wustl.edu	37	19	36120532	36120532	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	36120532	36120532	C	T	SNP	RBM42	ENST00000262633	human	ensembl	74_37	+1	known	missense	c.239	p.A80V	0.901	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM42	HGNC	ENSG00000126254				79	0	0	51	15	22.7273
KMT2B	0	genome.wustl.edu	37	19	36219029	36219029	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	36219029	36219029	G	A	SNP	KMT2B	ENST00000222270	human	ensembl	74_37	+1	known	missense	c.4528	p.A1510T	1.000	pirsf_MeTrfase_trithorax	pirsf_MeTrfase_trithorax,pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KMT2B	Uniprot_gn	ENSG00000272333				10	0	0	15	5	25
CACTIN	0	genome.wustl.edu	37	19	3624136	3624136	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	3624136	3624136	C	T	SNP	CACTIN	ENST00000248420	human	ensembl	74_37	-1	known	nonsense	c.192	p.W64*	0.005	NULL	pfam_Cactin_dom,pfam_Cactin_C	-	no_errors	CACTIN	HGNC	ENSG00000105298				54	0	0	42	9	17.6471
WDR62	0	genome.wustl.edu	37	19	36583697	36583697	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	36583697	36583697	C	T	SNP	WDR62	ENST00000401500	human	ensembl	74_37	+1	known	missense	c.2317	p.R773W	0.048	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR62	HGNC	ENSG00000075702				54	0	0	44	11	20
WDR62	0	genome.wustl.edu	37	19	36594764	36594764	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	36594764	36594764	G	A	SNP	WDR62	ENST00000401500	human	ensembl	74_37	+1	known	missense	c.4034	p.R1345H	0.903	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR62	HGNC	ENSG00000075702				56	0	0	26	7	21.2121
CAPNS1	0	genome.wustl.edu	37	19	36634008	36634008	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	36634008	36634008	G	A	SNP	CAPNS1	ENST00000588780	human	ensembl	74_37	+1	known	missense	c.434	p.R145H	1.000	NULL	pfscan_EF_hand_dom	-	no_errors	CAPNS1	HGNC	ENSG00000126247				169	0	0	117	38	24.5161
ZFP82	0	genome.wustl.edu	37	19	36884211	36884211	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	36884211	36884211	C	A	SNP	ZFP82	ENST00000392161	human	ensembl	74_37	-1	known	missense	c.1031	p.G344V	0.997	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP82	HGNC	ENSG00000181007				140	0	0	82	25	23.3645
ZNF382	0	genome.wustl.edu	37	19	37118277	37118277	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	37118277	37118277	G	A	SNP	ZNF382	ENST00000292928	human	ensembl	74_37	+1	known	missense	c.1478	p.G493E	0.299	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF382	HGNC	ENSG00000161298				103	0	0	77	21	21.4286
ZNF585A	0	genome.wustl.edu	37	19	37643373	37643373	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	37643373	37643373	G	A	SNP	ZNF585A	ENST00000356958	human	ensembl	74_37	-1	known	silent	c.1428	p.T476	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF585A	HGNC	ENSG00000196967				138	0	0	101	31	23.4848
ZNF570	0	genome.wustl.edu	37	19	37966838	37966838	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	37966838	37966838	G	A	SNP	ZNF570	ENST00000330173	human	ensembl	74_37	+1	known	missense	c.89	p.C30Y	0.644	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF570	HGNC	ENSG00000171827				81	0	0	57	21	26.9231
SIPA1L3	0	genome.wustl.edu	37	19	38600928	38600928	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	38600928	38600928	C	T	SNP	SIPA1L3	ENST00000222345	human	ensembl	74_37	+1	known	missense	c.2195	p.A732V	1.000	pfam_Rap_GAP_dom,pfscan_Rap_GAP_dom	pfam_DUF3401,pfam_Rap_GAP_dom,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L3	HGNC	ENSG00000105738				89	0	0	64	25	28.0899
RASGRP4	0	genome.wustl.edu	37	19	38901885	38901885	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	38901885	38901885	G	A	SNP	RASGRP4	ENST00000587738	human	ensembl	74_37	-1	known	silent	c.1722	p.C574	0.998	pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_DAG/PE-bd	pfam_RasGRF_CDC25,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_EF_hand_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N,prints_DAG/PE-bd	-	no_errors	RASGRP4	HGNC	ENSG00000171777				21	0	0	12	8	40
RASGRP4	0	genome.wustl.edu	37	19	38910889	38910889	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	38910889	38910889	G	A	SNP	RASGRP4	ENST00000587738	human	ensembl	74_37	-1	known	nonsense	c.391	p.R131*	0.914	superfamily_Ras_GEF_dom,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_EF_hand_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N,prints_DAG/PE-bd	-	no_errors	RASGRP4	HGNC	ENSG00000171777				10	0	0	8	6	42.8571
RYR1	0	genome.wustl.edu	37	19	38945909	38945909	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	38945909	38945909	G	A	SNP	RYR1	ENST00000359596	human	ensembl	74_37	+1	known	missense	c.1475	p.R492H	1.000	pfam_Ca-rel_channel	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218				120	0	0	91	15	14.1509
RYR1	0	genome.wustl.edu	37	19	38958369	38958369	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	38958369	38958369	C	T	SNP	RYR1	ENST00000359596	human	ensembl	74_37	+1	known	missense	c.3298	p.R1100C	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218				67	0	0	36	17	32.0755
RYR1	0	genome.wustl.edu	37	19	38976521	38976521	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	38976521	38976521	C	T	SNP	RYR1	ENST00000359596	human	ensembl	74_37	+1	known	silent	c.5226	p.R1742	0.993	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218				59	0	0	50	12	19.3548
RYR1	0	genome.wustl.edu	37	19	39052042	39052042	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	39052042	39052042	G	A	SNP	RYR1	ENST00000359596	human	ensembl	74_37	+1	known	missense	c.12572	p.R4191H	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218				61	0	0	41	11	21.1538
ATCAY	0	genome.wustl.edu	37	19	3907775	3907775	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	3907775	3907775	C	T	SNP	ATCAY	ENST00000301260	human	ensembl	74_37	+1	known	silent	c.402	p.S134	0.928	pfam_Bcl2-/adenovirus-E1B	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	ATCAY	HGNC	ENSG00000167654				20	0	0	16	6	27.2727
MAP4K1	0	genome.wustl.edu	37	19	39104547	39104547	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	39104547	39104547	C	T	SNP	MAP4K1	ENST00000591517	human	ensembl	74_37	-1	known	missense	c.506	p.R169H	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP4K1	HGNC	ENSG00000104814				13	0	0	15	6	28.5714
CAPN12	0	genome.wustl.edu	37	19	39229238	39229238	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	39229238	39229238	C	T	SNP	CAPN12	ENST00000328867	human	ensembl	74_37	-1	known	silent	c.780	p.A260	0.027	pfam_Peptidase_C2_calpain_cat,smart_Peptidase_C2_calpain_cat,pfscan_Peptidase_C2_calpain_cat	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,pfscan_EF_hand_dom,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN12	HGNC	ENSG00000182472				59	0	0	45	9	16.6667
NFKBIB	0	genome.wustl.edu	37	19	39399417	39399417	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	39399417	39399417	G	A	SNP	NFKBIB	ENST00000313582	human	ensembl	74_37	+1	known	missense	c.1016	p.R339Q	0.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	NFKBIB	HGNC	ENSG00000104825				46	0	0	35	8	18.6047
FBXO27	0	genome.wustl.edu	37	19	39516156	39516156	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	39516156	39516156	G	A	SNP	FBXO27	ENST00000292853	human	ensembl	74_37	-1	known	silent	c.747	p.R249	1.000	pfam_F-box-assoc_dom,superfamily_Galactose-bd-like,pfscan_F-box-assoc_dom	pfam_F-box-assoc_dom,pfam_F-box_dom,superfamily_Galactose-bd-like,superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom,pfscan_F-box-assoc_dom	-	no_errors	FBXO27	HGNC	ENSG00000161243				64	0	0	42	18	30
PAPL	0	genome.wustl.edu	37	19	39590899	39590899	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	39590899	39590899	G	A	SNP	PAPL	ENST00000331256	human	ensembl	74_37	+1	known	missense	c.538	p.A180T	0.877	pfam_PEstase_dom	pfam_PEstase_dom,superfamily_Purple_acid_Pase-like_N	-	no_errors	PAPL	Uniprot_gn	ENSG00000183760				90	0	0	53	24	31.1688
EEF2	0	genome.wustl.edu	37	19	3983221	3983221	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	3983221	3983221	G	A	SNP	EEF2	ENST00000309311	human	ensembl	74_37	-1	known	missense	c.287	p.A96V	0.196	pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,tigrfam_Small_GTP-bd_dom	pfam_EF_GTP-bd_dom,pfam_Transl_elong_EFG/EF2_IV,pfam_EFG_V,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Transl_B-barrel,superfamily_EFG_III-V,smart_Transl_elong_EFG/EF2_IV,smart_EFG_V,prints_EF_GTP-bd_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	EEF2	HGNC	ENSG00000167658				32	0	0	15	8	34.7826
SUPT5H	0	genome.wustl.edu	37	19	39949669	39949669	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	39949669	39949669	C	T	SNP	SUPT5H	ENST00000432763	human	ensembl	74_37	+1	known	silent	c.414	p.G138	0.999	pfam_Spt5_N,pirsf_TF_Spt5	pfam_TF_Spt5_NGN-domain,pfam_KOW,pfam_Spt5_N,superfamily_Translation_prot_SH3-like,smart_Transcrpt_antiterm_NusG_N_dom,smart_KOW,pirsf_TF_Spt5	-	no_errors	SUPT5H	HGNC	ENSG00000196235				150	0	0	93	33	26.1905
PSMC4	0	genome.wustl.edu	37	19	40486604	40486604	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	40486604	40486604	A	G	SNP	PSMC4	ENST00000157812	human	ensembl	74_37	+1	known	missense	c.1123	p.I375V	1.000	superfamily_P-loop_NTPase,tigrfam_26S_Psome_P45	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-2,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	-	no_errors	PSMC4	HGNC	ENSG00000013275				94	0	0	84	8	8.69565
ZNF780B	0	genome.wustl.edu	37	19	40541185	40541185	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	40541185	40541185	C	T	SNP	ZNF780B	ENST00000434248	human	ensembl	74_37	-1	known	silent	c.1581	p.K527	0.998	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF780B	HGNC	ENSG00000128000				94	0	0	92	10	9.80392
AKT2	0	genome.wustl.edu	37	19	40747910	40747910	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	40747910	40747910	G	A	SNP	AKT2	ENST00000392038	human	ensembl	74_37	-1	known	missense	c.508	p.R170W	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom	-	no_errors	AKT2	HGNC	ENSG00000105221				53	0	0	27	17	38.6364
HIPK4	0	genome.wustl.edu	37	19	40889788	40889788	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	40889788	40889788	C	T	SNP	HIPK4	ENST00000291823	human	ensembl	74_37	-1	known	missense	c.724	p.A242T	0.978	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	HIPK4	HGNC	ENSG00000160396				41	0	0	37	6	13.9535
HIPK4	0	genome.wustl.edu	37	19	40895719	40895719	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	40895719	40895719	G	A	SNP	HIPK4	ENST00000291823	human	ensembl	74_37	-1	known	missense	c.91	p.R31W	0.962	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	HIPK4	HGNC	ENSG00000160396				68	0	0	34	14	29.1667
SPTBN4	0	genome.wustl.edu	37	19	41019317	41019317	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	41019317	41019317	G	A	SNP	SPTBN4	ENST00000352632	human	ensembl	74_37	+1	known	missense	c.2621	p.R874H	1.000	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN4	HGNC	ENSG00000160460				14	0	0	3	4	57.1429
AXL	0	genome.wustl.edu	37	19	41744377	41744377	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	41744377	41744377	C	T	SNP	AXL	ENST00000301178	human	ensembl	74_37	+1	known	missense	c.997	p.P333S	1.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	AXL	HGNC	ENSG00000167601				38	0	0	27	3	10
HNRNPUL1	0	genome.wustl.edu	37	19	41810156	41810156	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	41810156	41810156	G	A	SNP	HNRNPUL1	ENST00000392006	human	ensembl	74_37	+1	known	missense	c.2252	p.S751N	1.000	NULL	pfam_SPRY_rcpt,pfam_SAP_dom,superfamily_ConA-like_lec_gl_sf,superfamily_P-loop_NTPase,smart_SAP_dom,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_SAP_dom	-	no_errors	HNRNPUL1	HGNC	ENSG00000105323				96	0	0	51	24	32
B9D2	0	genome.wustl.edu	37	19	41863924	41863924	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	41863924	41863924	G	A	SNP	B9D2	ENST00000243578	human	ensembl	74_37	-1	known	missense	c.92	p.A31V	0.998	pfam_B9_dom	pfam_B9_dom	-	no_errors	B9D2	HGNC	ENSG00000123810				41	0	0	32	4	11.1111
BCKDHA	0	genome.wustl.edu	37	19	41884222	41884222	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	41884222	41884222	G	A	SNP	BCKDHA	ENST00000595085	human	ensembl	74_37	+1	known	missense	c.8	p.S3N	0.001	NULL	pfam_DH_E1,pfam_Transketolase_N	-	no_errors	BCKDHA	HGNC	ENSG00000248098				79	0	0	81	12	12.9032
BCKDHA	0	genome.wustl.edu	37	19	41916541	41916541	+	Splice_Site	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	41916541	41916541	G	A	SNP	BCKDHA	ENST00000595085	human	ensembl	74_37	+1	known	splice_site	c.211-1	e2-1	0.123	-	-	-	no_errors	BCKDHA	HGNC	ENSG00000248098				32	0	0	22	13	37.1429
CD79A	0	genome.wustl.edu	37	19	42383170	42383170	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	42383170	42383170	G	A	SNP	CD79A	ENST00000221972	human	ensembl	74_37	+1	known	missense	c.190	p.V64I	0.070	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Phos_immunorcpt_sig_ITAM,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Phos_immunorcpt_sig_ITAM,pfscan_Phos_immunorcpt_sig_ITAM,pfscan_Ig-like_dom	-	no_errors	CD79A	HGNC	ENSG00000105369				59	0	0	42	5	10.6383
ARHGEF1	0	genome.wustl.edu	37	19	42409386	42409386	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	42409386	42409386	G	A	SNP	ARHGEF1	ENST00000337665	human	ensembl	74_37	+1	known	missense	c.2354	p.R785H	0.912	NULL	pfam_RGS-like_dom,pfam_DH-domain,superfamily_Regulat_G_prot_signal_superfam,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF1	HGNC	ENSG00000076928				50	0	0	28	16	36.3636
ZNF574	0	genome.wustl.edu	37	19	42584239	42584239	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	42584239	42584239	G	A	SNP	ZNF574	ENST00000222339	human	ensembl	74_37	+1	known	missense	c.1751	p.R584H	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF574	HGNC	ENSG00000105732				74	0	0	62	19	23.4568
DEDD2	0	genome.wustl.edu	37	19	42703764	42703764	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	42703764	42703764	G	A	SNP	DEDD2	ENST00000595337	human	ensembl	74_37	-1	known	silent	c.807	p.G269	0.355	NULL	pfam_DED,superfamily_DEATH-like_dom,smart_DED,pfscan_DED	-	no_errors	DEDD2	HGNC	ENSG00000160570				32	0	0	21	7	25
ZNF526	0	genome.wustl.edu	37	19	42729380	42729380	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	42729380	42729380	C	T	SNP	ZNF526	ENST00000301215	human	ensembl	74_37	+1	known	silent	c.825	p.C275	0.088	smart_Znf_C2H2-like	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF526	HGNC	ENSG00000167625				22	0	0	7	8	53.3333
ERF	0	genome.wustl.edu	37	19	42753169	42753169	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	42753169	42753169	C	T	SNP	ERF	ENST00000222329	human	ensembl	74_37	-1	known	silent	c.1095	p.S365	0.968	NULL	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ERF	HGNC	ENSG00000105722				46	0	0	32	9	21.9512
PRR19	0	genome.wustl.edu	37	19	42814738	42814738	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	42814738	42814738	C	T	SNP	PRR19	ENST00000341747	human	ensembl	74_37	+1	known	missense	c.917	p.P306L	0.002	NULL	NULL	-	no_errors	PRR19	HGNC	ENSG00000188368				78	0	0	39	20	33.8983
PSG1	0	genome.wustl.edu	37	19	43383699	43383699	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	43383699	43383699	C	T	SNP	PSG1	ENST00000312439	human	ensembl	74_37	-1	known	missense	c.35	p.R12H	0.000	NULL	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PSG1	HGNC	ENSG00000231924				140	1	0.70922	122	16	11.5942
MPND	0	genome.wustl.edu	37	19	4357406	4357406	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	4357406	4357406	G	A	SNP	MPND	ENST00000262966	human	ensembl	74_37	+1	known	missense	c.1153	p.A385T	0.998	NULL	pfam_JAB_MPN_dom	-	no_errors	MPND	HGNC	ENSG00000008382				16	0	0	5	5	50
XRCC1	0	genome.wustl.edu	37	19	44056177	44056177	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	44056177	44056177	C	T	SNP	XRCC1	ENST00000262887	human	ensembl	74_37	-1	known	silent	c.1074	p.T358	0.992	pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	pfam_Xrcc1_N,pfam_BRCT_dom,superfamily_Galactose-bd-like,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	XRCC1	HGNC	ENSG00000073050				44	0	0	29	6	17.1429
CHAF1A	0	genome.wustl.edu	37	19	4409428	4409428	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	4409428	4409428	C	T	SNP	CHAF1A	ENST00000301280	human	ensembl	74_37	+1	known	missense	c.632	p.T211M	0.000	NULL	pfam_CAF1A	-	no_errors	CHAF1A	HGNC	ENSG00000167670				55	0	0	27	9	25
ZNF230	0	genome.wustl.edu	37	19	44513032	44513032	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	44513032	44513032	G	A	SNP	ZNF230	ENST00000429154	human	ensembl	74_37	+1	known	missense	c.106	p.V36M	0.993	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF230	HGNC	ENSG00000159882				188	0	0	127	51	28.6517
ZNF234	0	genome.wustl.edu	37	19	44661004	44661004	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	44661004	44661004	C	T	SNP	ZNF234	ENST00000426739	human	ensembl	74_37	+1	known	nonsense	c.835	p.Q279*	0.976	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF234	HGNC	ENSG00000263002				215	0	0	182	19	9.45274
ZNF233	0	genome.wustl.edu	37	19	44778756	44778756	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	44778756	44778756	A	G	SNP	ZNF233	ENST00000391958	human	ensembl	74_37	+1	known	missense	c.1943	p.Y648C	0.003	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF233	HGNC	ENSG00000159915				112	0	0	83	17	17
CBLC	0	genome.wustl.edu	37	19	45284250	45284250	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	45284250	45284250	A	C	SNP	CBLC	ENST00000270279	human	ensembl	74_37	+1	known	missense	c.442	p.M148L	0.040	pfam_Adaptor_Cbl_EF_hand-like	pfam_Adaptor_Cbl_SH2-like,pfam_Adaptor_Cbl_EF_hand-like,pfam_Adaptor_Cbl_N_hlx,pfam_Znf_C3HC4_RING-type,superfamily_Adaptor_Cbl_N_hlx,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	CBLC	HGNC	ENSG00000142273				62	0	0	35	10	22.2222
BCAM	0	genome.wustl.edu	37	19	45316510	45316510	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	45316510	45316510	G	A	SNP	BCAM	ENST00000270233	human	ensembl	74_37	+1	known	missense	c.508	p.A170T	0.978	pfam_CD80_C2-set,pfscan_Ig-like_dom	pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	BCAM	HGNC	ENSG00000187244				41	0	0	29	10	25.641
TOMM40	0	genome.wustl.edu	37	19	45406321	45406321	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	45406321	45406321	G	A	SNP	TOMM40	ENST00000252487	human	ensembl	74_37	+1	known	silent	c.981	p.T327	0.965	pfam_Porin_Euk/Tom40	pfam_Porin_Euk/Tom40	-	no_errors	TOMM40	HGNC	ENSG00000130204				37	0	0	32	4	11.1111
CKM	0	genome.wustl.edu	37	19	45810786	45810786	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	45810786	45810786	C	T	SNP	CKM	ENST00000221476	human	ensembl	74_37	-1	known	silent	c.900	p.A300	0.999	pfam_ATP-guanido_PTrfase_cat	pfam_ATP-guanido_PTrfase_cat,pfam_ATP-guanido_PTrfase_N,superfamily_ATP-guanido_PTrfase_N	-	no_errors	CKM	HGNC	ENSG00000104879				32	0	0	20	6	23.0769
OPA3	0	genome.wustl.edu	37	19	46032371	46032371	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	46032371	46032371	G	A	SNP	OPA3	ENST00000323060	human	ensembl	74_37	-1	known	silent	c.486	p.H162	0.060	NULL	pfam_OPA3-like	-	no_errors	OPA3	HGNC	ENSG00000125741				14	0	0	19	6	24
STRN4	0	genome.wustl.edu	37	19	47225261	47225261	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	47225261	47225261	C	T	SNP	STRN4	ENST00000391910	human	ensembl	74_37	-1	known	missense	c.2095	p.A699T	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Striatin_N,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	STRN4	HGNC	ENSG00000090372				76	0	0	43	17	28.3333
C5AR1	0	genome.wustl.edu	37	19	47823356	47823356	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	47823356	47823356	G	A	SNP	C5AR1	ENST00000355085	human	ensembl	74_37	+1	known	missense	c.322	p.A108T	0.885	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Anaphtx_C5AR1/C5AR2,prints_GPCR_Rhodpsn,prints_Anphylx_rcpt,prints_Brdyknn_rcpt,prints_Formyl_pep_rcpt	-	no_errors	C5AR1	HGNC	ENSG00000197405				39	0	0	39	9	18.75
DHX34	0	genome.wustl.edu	37	19	47876049	47876049	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	47876049	47876049	G	A	SNP	DHX34	ENST00000328771	human	ensembl	74_37	+1	known	missense	c.1831	p.A611T	1.000	pfam_Helicase-assoc_dom,superfamily_P-loop_NTPase,smart_Helicase-assoc_dom	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX34	HGNC	ENSG00000134815				33	0	0	17	8	32
DHX34	0	genome.wustl.edu	37	19	47884536	47884536	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	47884536	47884536	G	A	SNP	DHX34	ENST00000328771	human	ensembl	74_37	+1	known	missense	c.3253	p.A1085T	0.725	NULL	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX34	HGNC	ENSG00000134815				49	0	0	21	13	38.2353
FEM1A	0	genome.wustl.edu	37	19	4792951	4792951	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	4792951	4792951	C	T	SNP	FEM1A	ENST00000269856	human	ensembl	74_37	+1	known	missense	c.1085	p.A362V	0.996	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	FEM1A	HGNC	ENSG00000141965				57	0	0	29	12	29.2683
NAPA	0	genome.wustl.edu	37	19	47995277	47995277	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	47995277	47995277	C	T	SNP	NAPA	ENST00000263354	human	ensembl	74_37	-1	known	missense	c.661	p.A221T	1.000	NULL	prints_NSF_attach	-	no_errors	NAPA	HGNC	ENSG00000105402				73	0	0	52	14	21.2121
TICAM1	0	genome.wustl.edu	37	19	4816588	4816588	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	4816588	4816588	G	A	SNP	TICAM1	ENST00000248244	human	ensembl	74_37	-1	known	missense	c.1802	p.A601V	0.000	pirsf_TICAM1	superfamily_TIR_dom,pirsf_TICAM1	-	no_errors	TICAM1	HGNC	ENSG00000127666				24	0	0	35	4	10.2564
TICAM1	0	genome.wustl.edu	37	19	4818028	4818028	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	4818028	4818028	G	A	SNP	TICAM1	ENST00000248244	human	ensembl	74_37	-1	known	missense	c.362	p.A121V	0.910	pirsf_TICAM1	superfamily_TIR_dom,pirsf_TICAM1	-	no_errors	TICAM1	HGNC	ENSG00000127666				50	0	0	22	8	26.6667
ZNF114	0	genome.wustl.edu	37	19	48790081	48790081	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	48790081	48790081	G	A	SNP	ZNF114	ENST00000315849	human	ensembl	74_37	+1	known	silent	c.1200	p.S400	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF114	HGNC	ENSG00000178150				159	0	0	104	36	25.7143
KDELR1	0	genome.wustl.edu	37	19	48887702	48887702	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	48887702	48887702	G	A	SNP	KDELR1	ENST00000330720	human	ensembl	74_37	-1	known	missense	c.389	p.A130V	1.000	pfam_ER_ret_rcpt,prints_ER_ret_rcpt	pfam_ER_ret_rcpt,prints_ER_ret_rcpt	-	no_errors	KDELR1	HGNC	ENSG00000105438				29	0	0	20	7	25.9259
RASIP1	0	genome.wustl.edu	37	19	49227759	49227759	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	49227759	49227759	G	A	SNP	RASIP1	ENST00000222145	human	ensembl	74_37	-1	known	silent	c.2379	p.G793	0.993	pfam_Dil_domain,pfscan_Dilute	pfam_Dil_domain,pfam_Ras-assoc,superfamily_SMAD_FHA_domain,smart_Ras-assoc,pfscan_Dilute,pfscan_Ras-assoc	-	no_errors	RASIP1	HGNC	ENSG00000105538				73	0	0	44	21	32.3077
NUCB1	0	genome.wustl.edu	37	19	49416353	49416353	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	49416353	49416353	G	A	SNP	NUCB1	ENST00000263273	human	ensembl	74_37	+1	known	missense	c.566	p.R189H	0.994	NULL	pfscan_EF_hand_dom	-	no_errors	NUCB1	HGNC	ENSG00000104805				75	0	0	61	4	6.15385
DHDH	0	genome.wustl.edu	37	19	49442881	49442881	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	49442881	49442881	G	A	SNP	DHDH	ENST00000221403	human	ensembl	74_37	+1	known	missense	c.542	p.C181Y	0.998	NULL	pfam_Oxidoreductase_N	-	no_errors	DHDH	HGNC	ENSG00000104808				72	0	0	51	21	29.1667
KCNA7	0	genome.wustl.edu	37	19	49575644	49575644	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	49575644	49575644	C	T	SNP	KCNA7	ENST00000221444	human	ensembl	74_37	-1	known	missense	c.199	p.A67T	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv1	-	no_errors	KCNA7	HGNC	ENSG00000104848				13	0	0	7	3	30
HRC	0	genome.wustl.edu	37	19	49657748	49657748	+	Silent	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	49657748	49657748	A	G	SNP	HRC	ENST00000252825	human	ensembl	74_37	-1	known	silent	c.747	p.D249	0.849	pfam_Hist_rich_Ca-bd	pfam_Hist_rich_Ca-bd	-	no_errors	HRC	HGNC	ENSG00000130528				23	0	0	19	5	20.8333
TEAD2	0	genome.wustl.edu	37	19	49846621	49846621	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	49846621	49846621	G	A	SNP	TEAD2	ENST00000311227	human	ensembl	74_37	-1	known	missense	c.944	p.A315V	0.854	pfam_TEA/ATTS,pirsf_TEF	pfam_TEA/ATTS,smart_TEA/ATTS,pirsf_TEF,pfscan_TEA/ATTS,prints_TEA/ATTS	-	no_errors	TEAD2	HGNC	ENSG00000074219				68	0	0	53	6	10.1695
FUZ	0	genome.wustl.edu	37	19	50314650	50314650	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	50314650	50314650	G	A	SNP	FUZ	ENST00000313777	human	ensembl	74_37	-1	known	silent	c.462	p.C154	0.112	NULL	NULL	-	no_errors	FUZ	HGNC	ENSG00000010361				22	0	0	16	5	23.8095
MED25	0	genome.wustl.edu	37	19	50334046	50334046	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	50334046	50334046	G	A	SNP	MED25	ENST00000312865	human	ensembl	74_37	+1	known	missense	c.1003	p.A335T	0.924	pfam_Mediator_Med25_SD1	pfam_Mediator_Med25_VWA,pfam_Mediator_Med25,pfam_Mediator_Med25_SD1,pfam_Mediator_Med25_NR-box	-	no_errors	MED25	HGNC	ENSG00000104973				28	0	0	9	4	30.7692
PNKP	0	genome.wustl.edu	37	19	50367620	50367620	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	50367620	50367620	C	T	SNP	PNKP	ENST00000322344	human	ensembl	74_37	-1	known	missense	c.539	p.R180H	0.250	pfam_PNK3P,superfamily_HAD-like_dom,tigrfam_PNK_3Pase_met,tigrfam_Polynucleotide_phosphatase,tigrfam_HAD-SF_hydro_IIIA	pfam_PNK3P,superfamily_HAD-like_dom,superfamily_SMAD_FHA_domain,superfamily_P-loop_NTPase,tigrfam_PNK_3Pase_met,tigrfam_Polynucleotide_phosphatase,tigrfam_HAD-SF_hydro_IIIA	-	no_errors	PNKP	HGNC	ENSG00000039650				194	0	0	98	8	7.54717
IL4I1	0	genome.wustl.edu	37	19	50393017	50393017	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	50393017	50393017	C	T	SNP	IL4I1	ENST00000341114	human	ensembl	74_37	-1	known	silent	c.1680	p.S560	0.000	NULL	pfam_Amino_oxidase,pfam_FAD-dep_OxRdtase,pfam_CHP00275_HI0933-like,pfam_FAD_bind_dom,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_AlaDH/PNT_NAD(H)-bd,pfam_mOase_FAD-bd,prints_Flavin_amine_oxidase	-	no_errors	IL4I1	HGNC	ENSG00000104951				35	0	0	20	9	31.0345
KDM4B	0	genome.wustl.edu	37	19	5041189	5041189	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	5041189	5041189	G	A	SNP	KDM4B	ENST00000159111	human	ensembl	74_37	+1	known	missense	c.359	p.R120H	1.000	NULL	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4B	HGNC	ENSG00000127663				105	1	0.943396	66	7	9.58904
IZUMO2	0	genome.wustl.edu	37	19	50655902	50655902	+	Silent	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	50655902	50655902	A	G	SNP	IZUMO2	ENST00000293405	human	ensembl	74_37	-1	known	silent	c.630	p.C210	0.000	NULL	NULL	-	no_errors	IZUMO2	HGNC	ENSG00000161652				233	0	0	177	56	24.0343
KDM4B	0	genome.wustl.edu	37	19	5082431	5082431	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	5082431	5082431	C	T	SNP	KDM4B	ENST00000159111	human	ensembl	74_37	+1	known	silent	c.834	p.A278	0.004	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4B	HGNC	ENSG00000127663				31	0	0	21	6	22.2222
POLD1	0	genome.wustl.edu	37	19	50905147	50905147	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	50905147	50905147	C	T	SNP	POLD1	ENST00000440232	human	ensembl	74_37	+1	known	silent	c.429	p.G143	1.000	pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	-	no_errors	POLD1	HGNC	ENSG00000062822				54	0	0	36	5	12.1951
JOSD2	0	genome.wustl.edu	37	19	51009492	51009492	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	51009492	51009492	C	T	SNP	JOSD2	ENST00000391815	human	ensembl	74_37	-1	known	missense	c.505	p.E169K	0.976	pfam_Josephin,pfscan_Josephin	pfam_Josephin,prints_Josephin,pfscan_Josephin	-	no_errors	JOSD2	HGNC	ENSG00000161677				30	0	0	16	6	27.2727
LRRC4B	0	genome.wustl.edu	37	19	51021314	51021314	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	51021314	51021314	C	T	SNP	LRRC4B	ENST00000389201	human	ensembl	74_37	-1	known	silent	c.1656	p.A552	1.000	NULL	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRC4B	HGNC	ENSG00000131409				33	0	0	17	8	32
SHANK1	0	genome.wustl.edu	37	19	51217085	51217085	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	51217085	51217085	G	A	SNP	SHANK1	ENST00000391814	human	ensembl	74_37	-1	known	silent	c.762	p.A254	0.986	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SH3_2,pfam_SAM_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SH3_domain,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK1	HGNC	ENSG00000161681				31	0	0	26	3	10.3448
SIGLEC10	0	genome.wustl.edu	37	19	51920664	51920664	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	51920664	51920664	C	T	SNP	SIGLEC10	ENST00000339313	human	ensembl	74_37	-1	known	silent	c.93	p.V31	0.002	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	SIGLEC10	HGNC	ENSG00000142512				63	0	0	41	14	25.4545
PTPRS	0	genome.wustl.edu	37	19	5206828	5206828	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	5206828	5206828	G	A	SNP	PTPRS	ENST00000372412	human	ensembl	74_37	-1	known	missense	c.5807	p.A1936V	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom	-	no_errors	PTPRS	HGNC	ENSG00000105426				81	0	0	64	18	21.9512
PTPRS	0	genome.wustl.edu	37	19	5244179	5244179	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	5244179	5244179	C	A	SNP	PTPRS	ENST00000372412	human	ensembl	74_37	-1	known	missense	c.1306	p.A436S	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom	-	no_errors	PTPRS	HGNC	ENSG00000105426				54	0	0	28	13	31.7073
ZNF350	0	genome.wustl.edu	37	19	52477672	52477672	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	52477672	52477672	G	A	SNP	ZNF350	ENST00000600703	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.012	-	-	-	no_errors	ZNF350	HGNC	ENSG00000256683				118	0	0	92	16	14.8148
ZNF615	0	genome.wustl.edu	37	19	52496650	52496650	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	52496650	52496650	C	T	SNP	ZNF615	ENST00000594083	human	ensembl	74_37	-1	known	missense	c.1712	p.R571H	0.005	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF615	HGNC	ENSG00000197619				129	0	0	109	10	8.40336
ZNF614	0	genome.wustl.edu	37	19	52519532	52519532	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	52519532	52519532	C	T	SNP	ZNF614	ENST00000270649	human	ensembl	74_37	-1	known	missense	c.1319	p.R440H	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF614	HGNC	ENSG00000142556				159	0	0	107	54	33.5404
ZNF616	0	genome.wustl.edu	37	19	52619372	52619372	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	52619372	52619372	C	A	SNP	ZNF616	ENST00000600228	human	ensembl	74_37	-1	known	nonsense	c.1045	p.G349*	0.471	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF616	HGNC	ENSG00000204611				195	0	0	104	63	37.7246
PPP2R1A	0	genome.wustl.edu	37	19	52714620	52714620	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	52714620	52714620	G	A	SNP	PPP2R1A	ENST00000322088	human	ensembl	74_37	+1	known	silent	c.378	p.A126	0.962	superfamily_ARM-type_fold,pfscan_HEAT_type_2	pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	PPP2R1A	HGNC	ENSG00000105568				55	0	0	33	16	32.6531
ZNF480	0	genome.wustl.edu	37	19	52825210	52825210	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	52825210	52825210	G	A	SNP	ZNF480	ENST00000468240	human	ensembl	74_37	+1	known	missense	c.707	p.C236Y	0.993	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF480	HGNC	ENSG00000198464				75	0	0	47	16	25.3968
ZNF480	0	genome.wustl.edu	37	19	52825228	52825228	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	52825228	52825228	G	A	SNP	ZNF480	ENST00000468240	human	ensembl	74_37	+1	known	missense	c.725	p.R242H	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF480	HGNC	ENSG00000198464				72	0	0	42	16	27.5862
ZNF528	0	genome.wustl.edu	37	19	52919279	52919279	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	52919279	52919279	C	T	SNP	ZNF528	ENST00000360465	human	ensembl	74_37	+1	known	missense	c.1174	p.R392C	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF528	HGNC	ENSG00000167555				105	1	0.943396	60	21	25.9259
ZNF611	0	genome.wustl.edu	37	19	53208665	53208665	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	53208665	53208665	G	A	SNP	ZNF611	ENST00000319783	human	ensembl	74_37	-1	known	missense	c.1643	p.A548V	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF611	HGNC	ENSG00000213020				266	0	0	232	26	10.0775
ZNF28	0	genome.wustl.edu	37	19	53311235	53311235	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	53311235	53311235	C	T	SNP	ZNF28	ENST00000464469	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZNF28	HGNC	ENSG00000198538				149	0	0	93	32	25.6
ZNF845	0	genome.wustl.edu	37	19	53848784	53848784	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	53848784	53848784	C	T	SNP	ZNF845	ENST00000458035	human	ensembl	74_37	+1	known	missense	c.41	p.A14V	0.992	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF845	HGNC	ENSG00000213799				250	0	0	146	42	22.3404
ZNF331	0	genome.wustl.edu	37	19	54080668	54080668	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	54080668	54080668	G	A	SNP	ZNF331	ENST00000253144	human	ensembl	74_37	+1	known	missense	c.854	p.S285N	0.034	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF331	HGNC	ENSG00000130844				105	0	0	61	22	26.506
MYADM	0	genome.wustl.edu	37	19	54376938	54376938	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	54376938	54376938	C	T	SNP	MYADM	ENST00000336967	human	ensembl	74_37	+1	known	missense	c.155	p.S52L	0.859	pfam_Marvel	pfam_Marvel	-	no_errors	MYADM	HGNC	ENSG00000179820				50	0	0	31	9	22.5
MYADM	0	genome.wustl.edu	37	19	54377441	54377441	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	54377441	54377441	G	A	SNP	MYADM	ENST00000336967	human	ensembl	74_37	+1	known	missense	c.658	p.A220T	0.926	pfam_Marvel	pfam_Marvel	-	no_errors	MYADM	HGNC	ENSG00000179820				69	0	0	63	10	13.6986
PRKCG	0	genome.wustl.edu	37	19	54410004	54410004	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	54410004	54410004	C	T	SNP	PRKCG	ENST00000540413	human	ensembl	74_37	+1	known	missense	c.1949	p.A650V	0.568	pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_C2_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g,prints_DAG/PE-bd,prints_C2_dom,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	PRKCG	HGNC	ENSG00000126583				47	0	0	37	4	9.7561
TFPT	0	genome.wustl.edu	37	19	54618073	54618073	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	54618073	54618073	C	T	SNP	TFPT	ENST00000391759	human	ensembl	74_37	-1	known	missense	c.31	p.A11T	1.000	NULL	NULL	-	no_errors	TFPT	HGNC	ENSG00000105619				83	0	0	55	15	21.4286
TMC4	0	genome.wustl.edu	37	19	54667393	54667393	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	54667393	54667393	G	A	SNP	TMC4	ENST00000416963	human	ensembl	74_37	-1	known	silent	c.33	p.G11	0.000	NULL	pfam_TMC	-	no_errors	TMC4	HGNC	ENSG00000167608				55	0	0	37	23	38.3333
TMC4	0	genome.wustl.edu	37	19	54669181	54669181	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	54669181	54669181	C	T	SNP	TMC4	ENST00000301187	human	ensembl	74_37	-1	known	missense	c.917	p.R306H	0.999	NULL	pfam_TMC	-	no_errors	TMC4	HGNC	ENSG00000167608				18	0	0	11	6	35.2941
LILRA4	0	genome.wustl.edu	37	19	54848127	54848127	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	54848127	54848127	C	T	SNP	LILRA4	ENST00000291759	human	ensembl	74_37	-1	known	missense	c.1240	p.E414K	0.014	smart_Ig_sub,pirsf_A1B_glyco/leuk_Ig-like_rcpt	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like_dom	-	no_errors	LILRA4	HGNC	ENSG00000239961				120	0	0	99	7	6.60377
LENG8	0	genome.wustl.edu	37	19	54967409	54967409	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	54967409	54967409	G	A	SNP	LENG8	ENST00000326764	human	ensembl	74_37	+1	known	missense	c.1289	p.R430H	1.000	NULL	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	-	no_errors	LENG8	HGNC	ENSG00000167615				93	0	0	67	18	21.1765
LILRB1	0	genome.wustl.edu	37	19	55143618	55143618	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	55143618	55143618	C	T	SNP	LILRB1	ENST00000324602	human	ensembl	74_37	+1	known	silent	c.591	p.C197	0.010	smart_Ig_sub	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LILRB1	HGNC	ENSG00000104972				108	0	0	108	7	6.08696
ENSG00000215765	0	genome.wustl.edu	37	19	55301513	55301513	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	55301513	55301513	G	A	SNP	ENSG00000215765	ENST00000400864	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	CTB-61M7.1	Clone_based_vega_gene	ENSG00000215765				24	0	0	16	4	20
RDH13	0	genome.wustl.edu	37	19	55568079	55568079	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	55568079	55568079	C	T	SNP	RDH13	ENST00000415061	human	ensembl	74_37	-1	known	silent	c.282	p.R94	0.903	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Epimerase_deHydtase	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Epimerase_deHydtase,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	RDH13	HGNC	ENSG00000160439				38	0	0	35	7	16.6667
PPP6R1	0	genome.wustl.edu	37	19	55742810	55742810	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	55742810	55742810	G	A	SNP	PPP6R1	ENST00000412770	human	ensembl	74_37	-1	known	silent	c.2427	p.H809	0.539	NULL	pfam_SAPS,superfamily_ARM-type_fold	-	no_errors	PPP6R1	HGNC	ENSG00000105063				11	0	0	2	3	60
ZNF581	0	genome.wustl.edu	37	19	56156449	56156449	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	56156449	56156449	G	A	SNP	ZNF581	ENST00000270451	human	ensembl	74_37	+1	known	missense	c.512	p.R171H	0.986	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF581	HGNC	ENSG00000171425				79	0	0	29	13	30.9524
NLRP4	0	genome.wustl.edu	37	19	56369066	56369066	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	56369066	56369066	G	A	SNP	NLRP4	ENST00000301295	human	ensembl	74_37	+1	known	missense	c.307	p.A103T	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP4	HGNC	ENSG00000160505				93	0	0	85	9	9.57447
NLRP4	0	genome.wustl.edu	37	19	56382267	56382267	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	56382267	56382267	G	A	SNP	NLRP4	ENST00000301295	human	ensembl	74_37	+1	known	missense	c.2429	p.R810H	0.000	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP4	HGNC	ENSG00000160505				85	0	0	83	17	17
ZNF787	0	genome.wustl.edu	37	19	56600116	56600116	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	56600116	56600116	C	T	SNP	ZNF787	ENST00000270459	human	ensembl	74_37	-1	known	missense	c.425	p.R142H	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF787	HGNC	ENSG00000142409				34	0	0	32	10	23.8095
ZNF470	0	genome.wustl.edu	37	19	57081729	57081729	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	57081729	57081729	G	A	SNP	ZNF470	ENST00000330619	human	ensembl	74_37	+1	known	missense	c.49	p.A17T	0.212	superfamily_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF470	HGNC	ENSG00000197016				64	0	0	44	12	21.4286
ZNF71	0	genome.wustl.edu	37	19	57133474	57133474	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	57133474	57133474	C	T	SNP	ZNF71	ENST00000328070	human	ensembl	74_37	+1	known	silent	c.819	p.P273	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF71	HGNC	ENSG00000197951				61	0	0	31	20	39.2157
ZNF835	0	genome.wustl.edu	37	19	57175802	57175802	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	57175802	57175802	G	A	SNP	ZNF835	ENST00000537055	human	ensembl	74_37	-1	known	silent	c.765	p.C255	0.386	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF835	HGNC	ENSG00000127903				35	0	0	33	9	21.4286
ZNF835	0	genome.wustl.edu	37	19	57176545	57176545	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	57176545	57176545	C	T	SNP	ZNF835	ENST00000537055	human	ensembl	74_37	-1	known	missense	c.22	p.A8T	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF835	HGNC	ENSG00000127903				58	0	0	44	10	18.5185
PEG3	0	genome.wustl.edu	37	19	57327787	57327787	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	57327787	57327787	G	A	SNP	PEG3	ENST00000326441	human	ensembl	74_37	-1	known	missense	c.2023	p.R675C	0.986	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	PEG3	HGNC	ENSG00000198300				159	0	0	94	38	28.7879
ZNF547	0	genome.wustl.edu	37	19	57889141	57889141	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	57889141	57889141	G	T	SNP	ZNF547	ENST00000282282	human	ensembl	74_37	+1	known	missense	c.797	p.R266M	0.023	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF547	HGNC	ENSG00000152433				131	0	0	107	7	6.14035
ZNF773	0	genome.wustl.edu	37	19	58018779	58018779	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	58018779	58018779	G	A	SNP	ZNF773	ENST00000282292	human	ensembl	74_37	+1	known	missense	c.1316	p.G439E	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF773	HGNC	ENSG00000152439				58	0	0	40	13	24.5283
ZNF550	0	genome.wustl.edu	37	19	58059290	58059290	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	58059290	58059290	G	A	SNP	ZNF550	ENST00000376230	human	ensembl	74_37	-1	known	missense	c.322	p.R108W	0.022	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF550	HGNC	ENSG00000251369				190	1	0.52356	114	30	20.8333
ZNF416	0	genome.wustl.edu	37	19	58084160	58084160	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	58084160	58084160	C	T	SNP	ZNF416	ENST00000196489	human	ensembl	74_37	-1	known	missense	c.1112	p.R371Q	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF416	HGNC	ENSG00000083817				84	0	0	90	9	9.09091
ZNF551	0	genome.wustl.edu	37	19	58199015	58199015	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	58199015	58199015	C	T	SNP	ZNF551	ENST00000282296	human	ensembl	74_37	+1	known	nonsense	c.1372	p.Q458*	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF551	HGNC	ENSG00000204519				113	0	0	94	19	16.8142
ZNF587B	0	genome.wustl.edu	37	19	58350411	58350411	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	58350411	58350411	C	T	SNP	ZNF587B	ENST00000442832	human	ensembl	74_37	+1	known	silent	c.57	p.D19	0.002	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF587B	HGNC	ENSG00000269343				59	0	0	47	8	14.5455
ZNF587B	0	genome.wustl.edu	37	19	58352434	58352434	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	58352434	58352434	A	G	SNP	ZNF587B	ENST00000442832	human	ensembl	74_37	+1	known	missense	c.392	p.D131G	0.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF587B	HGNC	ENSG00000269343				35	0	0	27	6	18.1818
ZNF587B	0	genome.wustl.edu	37	19	58352696	58352696	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	58352696	58352696	T	A	SNP	ZNF587B	ENST00000442832	human	ensembl	74_37	+1	known	missense	c.654	p.D218E	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF587B	HGNC	ENSG00000269343				25	0	0	30	7	18.9189
ZNF606	0	genome.wustl.edu	37	19	58512008	58512008	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	58512008	58512008	G	A	SNP	ZNF606	ENST00000546715	human	ensembl	74_37	-1	putative	missense	c.131	p.A44V	0.000	NULL	NULL	-	no_errors	ZNF606	HGNC	ENSG00000166704				33	0	0	21	4	16
ZNF329	0	genome.wustl.edu	37	19	58639657	58639657	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	58639657	58639657	C	T	SNP	ZNF329	ENST00000358067	human	ensembl	74_37	-1	known	missense	c.1214	p.G405D	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF329	HGNC	ENSG00000181894				74	0	0	59	11	15.7143
ZNF274	0	genome.wustl.edu	37	19	58724308	58724308	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	58724308	58724308	C	T	SNP	ZNF274	ENST00000326804	human	ensembl	74_37	+1	known	silent	c.1758	p.G586	0.438	pfscan_Znf_C2H2	pfam_Krueppel-associated_box,pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF274	HGNC	ENSG00000171606				98	0	0	71	7	8.97436
ZSCAN22	0	genome.wustl.edu	37	19	58850178	58850178	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	58850178	58850178	C	T	SNP	ZSCAN22	ENST00000329665	human	ensembl	74_37	+1	known	missense	c.962	p.A321V	0.870	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN22	HGNC	ENSG00000182318				100	0	0	68	25	26.8817
ZNF497	0	genome.wustl.edu	37	19	58867953	58867953	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	58867953	58867953	C	T	SNP	ZNF497	ENST00000311044	human	ensembl	74_37	-1	known	missense	c.1049	p.R350H	0.003	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF497	HGNC	ENSG00000174586				14	0	0	0	3	100
RFX2	0	genome.wustl.edu	37	19	6004294	6004294	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	6004294	6004294	G	A	SNP	RFX2	ENST00000303657	human	ensembl	74_37	-1	known	missense	c.1418	p.A473V	1.000	NULL	pfam_RFX1_trans_act,pfam_DNA-bd_RFX	-	no_errors	RFX2	HGNC	ENSG00000087903				79	0	0	74	6	7.5
C3	0	genome.wustl.edu	37	19	6711033	6711033	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	6711033	6711033	C	T	SNP	C3	ENST00000245907	human	ensembl	74_37	-1	known	missense	c.1444	p.A482T	0.000	pfam_A2M_N_2	pfam_A2M_comp,pfam_A-macroglobulin_rcpt-bd,pfam_Macroglobln_a2,pfam_Netrin_module_non-TIMP,pfam_A2M_N_2,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_comp_syst,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,prints_Anaphylatoxn_comp_syst_dom,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain	-	no_errors	C3	HGNC	ENSG00000125730				150	0	0	89	28	23.9316
GPR108	0	genome.wustl.edu	37	19	6732509	6732509	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	6732509	6732509	C	T	SNP	GPR108	ENST00000264080	human	ensembl	74_37	-1	known	missense	c.985	p.V329I	0.998	pfam_TM_rcpt_euk	pfam_TM_rcpt_euk	-	no_errors	GPR108	HGNC	ENSG00000125734				32	0	0	24	3	11.1111
ZNF557	0	genome.wustl.edu	37	19	7076449	7076449	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	7076449	7076449	C	T	SNP	ZNF557	ENST00000252840	human	ensembl	74_37	+1	known	silent	c.178	p.L60	0.103	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF557	HGNC	ENSG00000130544				139	0	0	92	10	9.80392
INSR	0	genome.wustl.edu	37	19	7141702	7141702	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	7141702	7141702	G	A	SNP	INSR	ENST00000302850	human	ensembl	74_37	-1	known	nonsense	c.2668	p.R890*	0.914	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_Fibronectin_type3,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom	-	no_errors	INSR	HGNC	ENSG00000171105				49	0	0	36	9	20
INSR	0	genome.wustl.edu	37	19	7170578	7170578	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	7170578	7170578	C	T	SNP	INSR	ENST00000302850	human	ensembl	74_37	-1	known	missense	c.1453	p.A485T	0.981	pirsf_Tyr_kinase_insulin-like_rcpt	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_Fibronectin_type3,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom	-	no_errors	INSR	HGNC	ENSG00000171105				160	0	0	90	40	30.7692
ARHGEF18	0	genome.wustl.edu	37	19	7509198	7509198	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	7509198	7509198	G	A	SNP	ARHGEF18	ENST00000359920	human	ensembl	74_37	+1	known	missense	c.905	p.R302H	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF18	HGNC	ENSG00000104880				40	0	0	24	7	22.5806
MISP	0	genome.wustl.edu	37	19	757730	757730	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	757730	757730	C	T	SNP	MISP	ENST00000215582	human	ensembl	74_37	+1	known	missense	c.784	p.R262C	0.000	NULL	NULL	-	no_errors	MISP	HGNC	ENSG00000099812				39	0	0	15	9	37.5
PNPLA6	0	genome.wustl.edu	37	19	7614956	7614956	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	7614956	7614956	G	A	SNP	PNPLA6	ENST00000414982	human	ensembl	74_37	+1	known	missense	c.1799	p.R600H	0.966	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	pfam_cNMP-bd_dom,pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	PNPLA6	HGNC	ENSG00000032444				101	0	0	74	12	13.9535
XAB2	0	genome.wustl.edu	37	19	7687312	7687312	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	7687312	7687312	C	T	SNP	XAB2	ENST00000358368	human	ensembl	74_37	-1	known	missense	c.1522	p.D508N	1.000	smart_HAT	smart_HAT,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	XAB2	HGNC	ENSG00000076924				116	0	0	84	25	22.9358
STXBP2	0	genome.wustl.edu	37	19	7703933	7703933	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	7703933	7703933	G	A	SNP	STXBP2	ENST00000221283	human	ensembl	74_37	+1	known	missense	c.116	p.R39H	1.000	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	STXBP2	HGNC	ENSG00000076944				50	0	0	36	5	12.1951
CLEC4M	0	genome.wustl.edu	37	19	7831687	7831687	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	7831687	7831687	G	T	SNP	CLEC4M	ENST00000327325	human	ensembl	74_37	+1	known	missense	c.930	p.E310D	0.061	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_AntifreezeII,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_AntifreezeII,pfscan_C-type_lectin	-	no_errors	CLEC4M	HGNC	ENSG00000104938				66	0	0	39	8	17.0213
LRRC8E	0	genome.wustl.edu	37	19	7965043	7965043	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	7965043	7965043	G	A	SNP	LRRC8E	ENST00000306708	human	ensembl	74_37	+1	known	missense	c.1636	p.A546T	0.775	NULL	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8E	HGNC	ENSG00000171017				25	0	0	22	4	15.3846
MAP2K7	0	genome.wustl.edu	37	19	7975375	7975375	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	7975375	7975375	G	A	SNP	MAP2K7	ENST00000545011	human	ensembl	74_37	+1	known	missense	c.611	p.R204H	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP2K7	HGNC	ENSG00000076984				23	0	0	8	6	42.8571
FBN3	0	genome.wustl.edu	37	19	8136980	8136980	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	8136980	8136980	G	A	SNP	FBN3	ENST00000270509	human	ensembl	74_37	-1	known	silent	c.8040	p.G2680	0.997	pirsf_FBN	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449				105	0	0	59	9	13.2353
LPPR3	0	genome.wustl.edu	37	19	814918	814918	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	814918	814918	G	A	SNP	LPPR3	ENST00000359894	human	ensembl	74_37	-1	known	silent	c.567	p.S189	0.280	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	LPPR3	Uniprot_gn	ENSG00000129951				30	0	0	17	4	19.0476
PRAM1	0	genome.wustl.edu	37	19	8564477	8564477	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	8564477	8564477	G	A	SNP	PRAM1	ENST00000423345	human	ensembl	74_37	-1	known	missense	c.215	p.P72L	0.005	NULL	superfamily_SH3_domain	-	no_errors	PRAM1	HGNC	ENSG00000133246				65	0	0	42	6	12.5
MYO1F	0	genome.wustl.edu	37	19	8604860	8604860	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	8604860	8604860	G	A	SNP	MYO1F	ENST00000338257	human	ensembl	74_37	-1	known	missense	c.1663	p.R555C	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_SH3_domain,pfam_SH3_2,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_SH3_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_SH3_domain,prints_Myosin_head_motor_dom,prints_SH3_domain	-	no_errors	MYO1F	HGNC	ENSG00000142347				26	0	0	14	10	41.6667
CFD	0	genome.wustl.edu	37	19	860951	860951	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	860951	860951	G	A	SNP	CFD	ENST00000327726	human	ensembl	74_37	+1	known	silent	c.303	p.V101	0.003	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Peptidase_S1	-	no_errors	CFD	HGNC	ENSG00000197766				12	0	0	10	3	23.0769
MYO1F	0	genome.wustl.edu	37	19	8618252	8618252	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	8618252	8618252	G	A	SNP	MYO1F	ENST00000338257	human	ensembl	74_37	-1	known	silent	c.396	p.G132	0.295	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_SH3_domain,pfam_SH3_2,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_SH3_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_SH3_domain,prints_Myosin_head_motor_dom,prints_SH3_domain	-	no_errors	MYO1F	HGNC	ENSG00000142347				65	0	0	78	6	7.14286
ACTL9	0	genome.wustl.edu	37	19	8808718	8808718	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	8808718	8808718	G	A	SNP	ACTL9	ENST00000324436	human	ensembl	74_37	-1	known	nonsense	c.334	p.Q112*	1.000	pfam_Actin-related,smart_Actin-related,prints_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTL9	HGNC	ENSG00000181786				23	0	0	12	4	25
ZNF558	0	genome.wustl.edu	37	19	8932718	8932718	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	8932718	8932718	G	A	SNP	ZNF558	ENST00000301475	human	ensembl	74_37	-1	known	silent	c.81	p.G27	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF558	HGNC	ENSG00000167785				163	0	0	107	27	20.1493
MUC16	0	genome.wustl.edu	37	19	9047264	9047264	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	9047264	9047264	G	A	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.34367	p.A11456V	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				145	0	0	91	30	24.7934
MUC16	0	genome.wustl.edu	37	19	9067419	9067419	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	9067419	9067419	G	A	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.20027	p.A6676V	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				184	0	0	162	20	10.989
MUC16	0	genome.wustl.edu	37	19	9070156	9070156	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	9070156	9070156	T	G	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.17290	p.T5764P	0.002	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				153	1	0.649351	111	48	30.1887
MUC16	0	genome.wustl.edu	37	19	9070335	9070335	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	9070335	9070335	G	T	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.17111	p.T5704N	0.010	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				93	0	0	54	19	26.0274
MUC16	0	genome.wustl.edu	37	19	9075638	9075638	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	9075638	9075638	C	T	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	silent	c.11808	p.E3936	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				37	0	0	28	5	15.1515
OR7D2	0	genome.wustl.edu	37	19	9297198	9297198	+	Silent	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	9297198	9297198	C	A	SNP	OR7D2	ENST00000344248	human	ensembl	74_37	+1	known	silent	c.741	p.V247	0.042	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR7D2	HGNC	ENSG00000188000				81	0	0	73	23	23.9583
ZNF560	0	genome.wustl.edu	37	19	9577561	9577561	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	9577561	9577561	C	T	SNP	ZNF560	ENST00000301480	human	ensembl	74_37	-1	known	missense	c.2062	p.A688T	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF560	HGNC	ENSG00000198028				160	0	0	101	35	25.7353
FBXL12	0	genome.wustl.edu	37	19	9922250	9922250	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	9922250	9922250	G	A	SNP	FBXL12	ENST00000247977	human	ensembl	74_37	-1	known	silent	c.303	p.C101	1.000	NULL	pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXL12	HGNC	ENSG00000127452				75	0	0	36	16	30.7692
TAF1B	0	genome.wustl.edu	37	2	10050891	10050891	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	10050891	10050891	G	A	SNP	TAF1B	ENST00000263663	human	ensembl	74_37	+1	known	missense	c.982	p.V328M	0.936	NULL	pfam_TF_Rrn7	-	no_errors	TAF1B	HGNC	ENSG00000115750				86	0	0	62	20	24.3902
TBC1D8	0	genome.wustl.edu	37	2	101627911	101627911	+	Splice_Site	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	101627911	101627911	G	A	SNP	TBC1D8	ENST00000409318	human	ensembl	74_37	-1	known	splice_site	c.2917+2	e18+2	0.833	-	-	-	no_errors	TBC1D8	HGNC	ENSG00000204634				86	0	0	90	6	6.25
IL1RL1	0	genome.wustl.edu	37	2	102965663	102965663	+	Silent	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	102965663	102965663	C	A	SNP	IL1RL1	ENST00000233954	human	ensembl	74_37	+1	known	silent	c.1242	p.G414	0.911	pfam_TIR_dom,superfamily_TIR_dom,smart_TIR_dom,pfscan_TIR_dom	pfam_TIR_dom,pfam_Ig_I-set,superfamily_TIR_dom,smart_Ig_sub,smart_Ig_sub2,smart_TIR_dom,prints_IL-1_rcpt_I/II-typ,pfscan_TIR_dom,pfscan_Ig-like_dom	-	no_errors	IL1RL1	HGNC	ENSG00000115602				117	0	0	103	7	6.36364
MFSD9	0	genome.wustl.edu	37	2	103334879	103334879	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	103334879	103334879	C	T	SNP	MFSD9	ENST00000258436	human	ensembl	74_37	-1	known	silent	c.1425	p.*475	0.703	NULL	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Tet-R_TetA/multi-R_MdtG	-	no_errors	MFSD9	HGNC	ENSG00000135953				121	0	0	102	6	5.55556
MRPS9	0	genome.wustl.edu	37	2	105713663	105713663	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	105713663	105713663	A	G	SNP	MRPS9	ENST00000258455	human	ensembl	74_37	+1	known	missense	c.980	p.D327G	1.000	pfam_Ribosomal_S9,superfamily_Ribosomal_S5_D2-typ_fold	pfam_Ribosomal_S9,superfamily_Ribosomal_S5_D2-typ_fold	-	no_errors	MRPS9	HGNC	ENSG00000135972				78	0	0	56	5	8.19672
ODC1	0	genome.wustl.edu	37	2	10581770	10581770	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	10581770	10581770	C	T	SNP	ODC1	ENST00000234111	human	ensembl	74_37	-1	known	missense	c.1106	p.R369H	1.000	pfam_De-COase2_C,superfamily_Ala_racemase/Decarboxylase_C	pfam_De-COase2_N,pfam_De-COase2_C,superfamily_Ala_racemase/Decarboxylase_C,prints_Orn_de-COase,prints_Orn/DAP/Arg_de-COase	-	no_errors	ODC1	HGNC	ENSG00000115758				60	0	0	53	26	32.9114
GPR45	0	genome.wustl.edu	37	2	105858977	105858977	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	105858977	105858977	C	T	SNP	GPR45	ENST00000258456	human	ensembl	74_37	+1	known	missense	c.662	p.T221M	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR45	HGNC	ENSG00000135973				41	0	0	29	14	32.5581
NCK2	0	genome.wustl.edu	37	2	106498353	106498353	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	106498353	106498353	G	A	SNP	NCK2	ENST00000233154	human	ensembl	74_37	+1	known	missense	c.796	p.A266T	0.433	superfamily_SH3_domain,pirsf_Cytoplasmic_NCK	pfam_SH3_domain,pfam_SH3_2,pfam_SH2,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,pirsf_Cytoplasmic_NCK,pfscan_SH2,pfscan_SH3_domain,prints_SH2,prints_SH3_domain	-	no_errors	NCK2	HGNC	ENSG00000071051				30	0	0	30	4	11.7647
ST6GAL2	0	genome.wustl.edu	37	2	107460198	107460198	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	107460198	107460198	G	A	SNP	ST6GAL2	ENST00000361686	human	ensembl	74_37	-1	known	missense	c.236	p.A79V	0.000	NULL	pfam_Glyco_trans_29,superfamily_Glyco_hydro/deAcase_b/a-brl	-	no_errors	ST6GAL2	HGNC	ENSG00000144057				27	0	0	18	8	30.7692
RGPD4	0	genome.wustl.edu	37	2	108455331	108455331	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	108455331	108455331	A	G	SNP	RGPD4	ENST00000354986	human	ensembl	74_37	+1	known	missense	c.316	p.K106E	0.935	NULL	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR_1,pfam_TPR_2,superfamily_GRIP,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD4	HGNC	ENSG00000196862				92	0	0	63	27	30
SLC5A7	0	genome.wustl.edu	37	2	108618435	108618435	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	108618435	108618435	C	T	SNP	SLC5A7	ENST00000264047	human	ensembl	74_37	+1	known	missense	c.680	p.P227L	1.000	pfam_Na/solute_symporter,pfscan_Na/solute_symporter	pfam_Na/solute_symporter,pfscan_Na/solute_symporter	-	no_errors	SLC5A7	HGNC	ENSG00000115665				92	0	0	67	11	14.1026
SULT1C3	0	genome.wustl.edu	37	2	108868906	108868906	+	Silent	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	108868906	108868906	A	G	SNP	SULT1C3	ENST00000329106	human	ensembl	74_37	+1	known	silent	c.258	p.R86	0.000	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	SULT1C3	HGNC	ENSG00000196228				79	0	0	52	3	5.45455
RANBP2	0	genome.wustl.edu	37	2	109382686	109382686	+	Silent	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	109382686	109382686	A	G	SNP	RANBP2	ENST00000283195	human	ensembl	74_37	+1	known	silent	c.5691	p.G1897	0.825	NULL	pfam_Ran_bind_dom,pfam_Znf_RanBP2,pfam_IR1-M,pfam_Cyclophilin-like_PPIase_dom,pfam_TPR_1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,smart_Ran_bind_dom,smart_Znf_RanBP2,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RanBP2,pfscan_Cyclophilin-like_PPIase_dom,pfscan_Ran_bind_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	RANBP2	HGNC	ENSG00000153201				228	1	0.436681	209	20	8.73362
KCNF1	0	genome.wustl.edu	37	2	11053250	11053250	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	11053250	11053250	T	C	SNP	KCNF1	ENST00000295082	human	ensembl	74_37	+1	known	missense	c.698	p.F233S	1.000	pfam_Ion_trans_dom,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,pfam_PKD1_2_channel,superfamily_BTB/POZ_fold,prints_K_chnl,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv6	-	no_errors	KCNF1	HGNC	ENSG00000162975				36	0	0	25	7	21.875
KCNF1	0	genome.wustl.edu	37	2	11053818	11053818	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	11053818	11053818	G	A	SNP	KCNF1	ENST00000295082	human	ensembl	74_37	+1	known	silent	c.1266	p.A422	0.000	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,pfam_PKD1_2_channel,superfamily_BTB/POZ_fold,prints_K_chnl,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv6	-	no_errors	KCNF1	HGNC	ENSG00000162975				30	0	0	10	6	37.5
NPHP1	0	genome.wustl.edu	37	2	110927445	110927445	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	110927445	110927445	C	T	SNP	NPHP1	ENST00000316534	human	ensembl	74_37	-1	known	missense	c.460	p.G154S	0.000	superfamily_SH3_domain,pfscan_SH3_domain	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	NPHP1	HGNC	ENSG00000144061				97	0	0	61	26	29.8851
TTL	0	genome.wustl.edu	37	2	113243554	113243554	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	113243554	113243554	G	A	SNP	TTL	ENST00000233336	human	ensembl	74_37	+1	known	missense	c.218	p.R73H	1.000	NULL	pfam_TTL/TTLL_fam	-	no_errors	TTL	HGNC	ENSG00000114999				138	0	0	105	9	7.89474
POLR1B	0	genome.wustl.edu	37	2	113331267	113331267	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	113331267	113331267	C	T	SNP	POLR1B	ENST00000541869	human	ensembl	74_37	+1	known	silent	c.2514	p.D838	1.000	pfam_DNA-dir_RNA_pol_su2_6	pfam_DNA-dir_RNA_pol_su2_6,pfam_RNA_pol_bsu_protrusion,pfam_RNA_pol_Rpb2_3,pfam_RNA_pol_Rpb2_7,pfam_RNA_pol_Rpa2-specific,pfam_RNA_pol_Rpb2_2,pfam_RNA_pol_Rpb2_5	-	no_errors	POLR1B	HGNC	ENSG00000125630				128	0	0	96	39	28.8889
SLC20A1	0	genome.wustl.edu	37	2	113414818	113414818	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	113414818	113414818	C	T	SNP	SLC20A1	ENST00000272542	human	ensembl	74_37	+1	known	nonsense	c.778	p.R260*	1.000	pfam_Phos_transporter	pfam_Phos_transporter	-	no_errors	SLC20A1	HGNC	ENSG00000144136				66	0	0	42	13	23.6364
CKAP2L	0	genome.wustl.edu	37	2	113510001	113510001	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	113510001	113510001	G	T	SNP	CKAP2L	ENST00000302450	human	ensembl	74_37	-1	known	missense	c.1445	p.P482H	1.000	NULL	NULL	-	no_errors	CKAP2L	HGNC	ENSG00000169607				49	0	0	50	8	13.7931
CKAP2L	0	genome.wustl.edu	37	2	113514730	113514730	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	113514730	113514730	G	T	SNP	CKAP2L	ENST00000302450	human	ensembl	74_37	-1	known	missense	c.218	p.S73Y	0.030	NULL	NULL	-	no_errors	CKAP2L	HGNC	ENSG00000169607				237	0	0	202	11	5.16432
CKAP2L	0	genome.wustl.edu	37	2	113520091	113520091	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	113520091	113520091	G	A	SNP	CKAP2L	ENST00000302450	human	ensembl	74_37	-1	known	silent	c.93	p.S31	0.191	NULL	NULL	-	no_errors	CKAP2L	HGNC	ENSG00000169607				54	0	0	34	7	17.0732
DPP10	0	genome.wustl.edu	37	2	116572398	116572398	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	116572398	116572398	C	T	SNP	DPP10	ENST00000393147	human	ensembl	74_37	+1	known	missense	c.1742	p.T581I	1.000	NULL	pfam_Peptidase_S9B,pfam_Peptidase_S9	-	no_errors	DPP10	HGNC	ENSG00000175497				121	0	0	85	29	25.4386
DDX18	0	genome.wustl.edu	37	2	118577236	118577236	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	118577236	118577236	G	A	SNP	DDX18	ENST00000263239	human	ensembl	74_37	+1	known	missense	c.382	p.A128T	0.997	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX18	HGNC	ENSG00000088205				60	0	0	42	14	25
CCDC93	0	genome.wustl.edu	37	2	118732839	118732839	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	118732839	118732839	C	T	SNP	CCDC93	ENST00000376300	human	ensembl	74_37	-1	known	silent	c.675	p.T225	0.000	NULL	pfam_DUF2037	-	no_errors	CCDC93	HGNC	ENSG00000125633				151	0	0	104	53	33.758
LPIN1	0	genome.wustl.edu	37	2	11924028	11924028	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	11924028	11924028	G	A	SNP	LPIN1	ENST00000449576	human	ensembl	74_37	+1	known	silent	c.1485	p.A495	0.518	NULL	pfam_LNS2,pfam_Lipin_N,superfamily_HAD-like_dom,superfamily_WD40_repeat_dom,smart_LNS2	-	no_errors	LPIN1	HGNC	ENSG00000134324				203	0	0	145	46	24.0838
MARCO	0	genome.wustl.edu	37	2	119752090	119752090	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	119752090	119752090	C	T	SNP	MARCO	ENST00000327097	human	ensembl	74_37	+1	known	silent	c.1557	p.S519	0.007	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_SRCR	pfam_Collagen,pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_SRCR	-	no_errors	MARCO	HGNC	ENSG00000019169				43	0	0	36	9	20
STEAP3	0	genome.wustl.edu	37	2	120005382	120005382	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	120005382	120005382	G	A	SNP	STEAP3	ENST00000393110	human	ensembl	74_37	+1	known	missense	c.650	p.R217H	1.000	NULL	pfam_Fe3_Rdtase_TM_dom	-	no_errors	STEAP3	HGNC	ENSG00000115107				39	0	0	24	6	20
STEAP3	0	genome.wustl.edu	37	2	120005645	120005645	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	120005645	120005645	C	T	SNP	STEAP3	ENST00000393110	human	ensembl	74_37	+1	known	silent	c.913	p.L305	1.000	pfam_Fe3_Rdtase_TM_dom	pfam_Fe3_Rdtase_TM_dom	-	no_errors	STEAP3	HGNC	ENSG00000115107				23	0	0	22	7	24.1379
TMEM177	0	genome.wustl.edu	37	2	120438980	120438980	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	120438980	120438980	G	A	SNP	TMEM177	ENST00000272521	human	ensembl	74_37	+1	known	missense	c.551	p.G184D	0.002	NULL	NULL	-	no_errors	TMEM177	HGNC	ENSG00000144120				32	0	0	18	8	30.7692
TMEM177	0	genome.wustl.edu	37	2	120439194	120439194	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	120439194	120439194	G	A	SNP	TMEM177	ENST00000272521	human	ensembl	74_37	+1	known	silent	c.765	p.S255	0.682	NULL	NULL	-	no_errors	TMEM177	HGNC	ENSG00000144120				58	0	0	52	6	10.3448
MKI67IP	0	genome.wustl.edu	37	2	122485487	122485487	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	122485487	122485487	C	T	SNP	MKI67IP	ENST00000285814	human	ensembl	74_37	-1	known	missense	c.695	p.G232D	0.986	pfam_hNIFK_FHA_Ki67_binding	pfam_hNIFK_FHA_Ki67_binding,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	MKI67IP	HGNC	ENSG00000155438				57	0	0	32	20	38.4615
MYO7B	0	genome.wustl.edu	37	2	128339927	128339927	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	128339927	128339927	G	A	SNP	MYO7B	ENST00000389524	human	ensembl	74_37	+1	known	missense	c.1249	p.A417T	0.929	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_SH3_2,superfamily_P-loop_NTPase,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7B	HGNC	ENSG00000169994				36	0	0	27	9	25
MYO7B	0	genome.wustl.edu	37	2	128394476	128394476	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	128394476	128394476	C	T	SNP	MYO7B	ENST00000389524	human	ensembl	74_37	+1	known	silent	c.6240	p.C2080	0.840	pfscan_FERM_domain	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_SH3_2,superfamily_P-loop_NTPase,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7B	HGNC	ENSG00000169994				29	0	0	17	6	26.087
GPR17	0	genome.wustl.edu	37	2	128408489	128408489	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	128408489	128408489	C	T	SNP	GPR17	ENST00000272644	human	ensembl	74_37	+1	known	silent	c.264	p.H88	0.997	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Protea_act_rcpt	-	no_errors	GPR17	HGNC	ENSG00000144230				66	0	0	73	11	13.0952
WDR33	0	genome.wustl.edu	37	2	128471545	128471545	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	128471545	128471545	G	A	SNP	WDR33	ENST00000322313	human	ensembl	74_37	-1	known	missense	c.2920	p.R974W	1.000	NULL	pfam_WD40_repeat,pfam_Collagen,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR33	HGNC	ENSG00000136709				41	0	0	30	17	36.1702
TUBA3E	0	genome.wustl.edu	37	2	130949603	130949603	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	130949603	130949603	G	A	SNP	TUBA3E	ENST00000312988	human	ensembl	74_37	-1	known	missense	c.1154	p.A385V	0.998	pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tub_FtsZ_C,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Delta_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin	-	no_errors	TUBA3E	HGNC	ENSG00000152086				88	0	0	69	8	10.3896
POTEE	0	genome.wustl.edu	37	2	131976329	131976329	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	131976329	131976329	C	T	SNP	POTEE	ENST00000356920	human	ensembl	74_37	+1	known	silent	c.354	p.G118	0.002	NULL	pfam_Actin-related,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Actin-related,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Actin-related	-	no_errors	POTEE	HGNC	ENSG00000188219				189	0	0	144	34	19.1011
NCKAP5	0	genome.wustl.edu	37	2	133547759	133547759	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	133547759	133547759	T	C	SNP	NCKAP5	ENST00000317721	human	ensembl	74_37	-1	known	missense	c.929	p.K310R	1.000	NULL	NULL	-	no_errors	NCKAP5	HGNC	ENSG00000176771				40	0	0	46	3	6.12245
NCKAP5	0	genome.wustl.edu	37	2	133887575	133887575	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	133887575	133887575	G	A	SNP	NCKAP5	ENST00000317721	human	ensembl	74_37	-1	known	missense	c.316	p.R106C	0.963	NULL	NULL	-	no_errors	NCKAP5	HGNC	ENSG00000176771				37	0	0	26	12	31.5789
NCKAP5	0	genome.wustl.edu	37	2	134060653	134060653	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	134060653	134060653	C	A	SNP	NCKAP5	ENST00000317721	human	ensembl	74_37	-1	known	missense	c.99	p.E33D	0.998	NULL	NULL	-	no_errors	NCKAP5	HGNC	ENSG00000176771				29	0	0	27	9	25
ACMSD	0	genome.wustl.edu	37	2	135630090	135630090	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	135630090	135630090	G	A	SNP	ACMSD	ENST00000356140	human	ensembl	74_37	+1	known	missense	c.728	p.R243H	1.000	pfam_Amidohydro_2	pfam_Amidohydro_2	-	no_errors	ACMSD	HGNC	ENSG00000153086				66	0	0	39	10	20.4082
R3HDM1	0	genome.wustl.edu	37	2	136473231	136473231	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	136473231	136473231	C	T	SNP	R3HDM1	ENST00000264160	human	ensembl	74_37	+1	known	missense	c.2743	p.P915S	0.688	NULL	pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd	-	no_errors	R3HDM1	HGNC	ENSG00000048991				153	0	0	100	27	21.2598
UBXN4	0	genome.wustl.edu	37	2	136513161	136513161	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	136513161	136513161	G	A	SNP	UBXN4	ENST00000272638	human	ensembl	74_37	+1	known	silent	c.408	p.A136	0.985	NULL	pfam_UBX,superfamily_Thioredoxin-like_fold,smart_UBX,pfscan_UBX	-	no_errors	UBXN4	HGNC	ENSG00000144224				80	0	0	47	25	34.7222
LCT	0	genome.wustl.edu	37	2	136558281	136558281	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	136558281	136558281	C	T	SNP	LCT	ENST00000264162	human	ensembl	74_37	-1	known	missense	c.4762	p.A1588T	0.292	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	LCT	HGNC	ENSG00000115850				60	0	0	52	23	30.6667
LCT	0	genome.wustl.edu	37	2	136567187	136567187	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	136567187	136567187	G	A	SNP	LCT	ENST00000264162	human	ensembl	74_37	-1	known	silent	c.2730	p.G910	0.000	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	LCT	HGNC	ENSG00000115850				96	0	0	79	8	9.1954
THSD7B	0	genome.wustl.edu	37	2	137928508	137928508	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	137928508	137928508	G	A	SNP	THSD7B	ENST00000272643	human	ensembl	74_37	+1	known	missense	c.1723	p.G575R	0.995	NULL	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7B	HGNC	ENSG00000144229				54	0	0	44	9	16.9811
HNMT	0	genome.wustl.edu	37	2	138762705	138762705	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	138762705	138762705	C	T	SNP	HNMT	ENST00000280097	human	ensembl	74_37	+1	known	silent	c.433	p.L145	1.000	pfam_Methyltransf_12,pirsf_Histamine_N-methyltransferase	pfam_Methyltransf_12,pirsf_Histamine_N-methyltransferase	-	no_errors	HNMT	HGNC	ENSG00000150540				126	0	0	82	26	24.0741
LRP1B	0	genome.wustl.edu	37	2	141259398	141259398	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	141259398	141259398	C	T	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.8708	p.C2903Y	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				38	0	0	36	11	23.4043
LRP1B	0	genome.wustl.edu	37	2	141294197	141294197	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	141294197	141294197	C	T	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.7595	p.G2532D	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				111	0	0	69	17	19.7674
GTDC1	0	genome.wustl.edu	37	2	144765058	144765058	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	144765058	144765058	C	T	SNP	GTDC1	ENST00000344850	human	ensembl	74_37	-1	known	missense	c.566	p.G189D	0.537	NULL	pfam_GlycosylTrfase_1_N,pfam_Glyco_trans_1	-	no_errors	GTDC1	HGNC	ENSG00000121964				91	0	0	59	14	19.1781
TPO	0	genome.wustl.edu	37	2	1497645	1497645	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	1497645	1497645	G	A	SNP	TPO	ENST00000329066	human	ensembl	74_37	+1	known	missense	c.1840	p.A614T	0.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_EGF-like_Ca-bd_dom,superfamily_Haem_peroxidase,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	TPO	HGNC	ENSG00000115705				48	0	0	46	12	20.6897
KIF5C	0	genome.wustl.edu	37	2	149853828	149853828	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	149853828	149853828	C	T	SNP	KIF5C	ENST00000435030	human	ensembl	74_37	+1	known	missense	c.2074	p.R692W	0.954	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	KIF5C	HGNC	ENSG00000168280				68	0	0	48	14	22.5806
RND3	0	genome.wustl.edu	37	2	151326517	151326517	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	151326517	151326517	C	A	SNP	RND3	ENST00000263895	human	ensembl	74_37	-1	known	missense	c.719	p.S240I	1.000	NULL	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RND3	HGNC	ENSG00000115963				85	0	0	68	6	8.10811
NEB	0	genome.wustl.edu	37	2	152536281	152536281	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	152536281	152536281	G	A	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	missense	c.3209	p.A1070V	1.000	pfam_Nebulin_35r-motif,superfamily_Adhesion_dom,smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091				70	0	0	57	16	21.9178
NEB	0	genome.wustl.edu	37	2	152580820	152580820	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	152580820	152580820	G	A	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	missense	c.566	p.A189V	1.000	pfam_Nebulin_35r-motif,smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091				43	0	0	18	5	21.7391
ARL5A	0	genome.wustl.edu	37	2	152663340	152663340	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	152663340	152663340	G	A	SNP	ARL5A	ENST00000295087	human	ensembl	74_37	-1	known	silent	c.486	p.G162	0.989	pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,pfam_MIRO-like,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,prints_Small_GTPase_ARF/SAR,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	ARL5A	HGNC	ENSG00000162980				57	0	0	48	5	9.43396
NBAS	0	genome.wustl.edu	37	2	15696925	15696925	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	15696925	15696925	C	T	SNP	NBAS	ENST00000281513	human	ensembl	74_37	-1	known	missense	c.191	p.R64H	0.922	NULL	pfam_Sec39,superfamily_Quino_amine_DH_bsu	-	no_errors	NBAS	HGNC	ENSG00000151779				84	0	0	70	16	18.6047
ACVR1	0	genome.wustl.edu	37	2	158626897	158626897	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	158626897	158626897	C	A	SNP	ACVR1	ENST00000263640	human	ensembl	74_37	-1	known	missense	c.773	p.R258M	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_TGFB_receptor,pfscan_Prot_kinase_dom	-	no_errors	ACVR1	HGNC	ENSG00000115170				171	1	0.581395	178	11	5.82011
PKP4	0	genome.wustl.edu	37	2	159477502	159477502	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	159477502	159477502	A	G	SNP	PKP4	ENST00000389759	human	ensembl	74_37	+1	known	missense	c.281	p.D94G	1.000	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	PKP4	HGNC	ENSG00000144283				114	0	0	112	8	6.66667
LOC100129029	0	genome.wustl.edu	37	2	159517990	159517990	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	159517990	159517990	C	T	SNP	LOC100129029	ENST00000342892	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AC005042.4	Clone_based_vega_gene	ENSG00000204380				33	0	0	27	7	20.5882
PKP4	0	genome.wustl.edu	37	2	159526422	159526422	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	159526422	159526422	C	T	SNP	PKP4	ENST00000389759	human	ensembl	74_37	+1	known	silent	c.2919	p.G973	0.992	superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	PKP4	HGNC	ENSG00000144283				25	0	0	19	10	34.4828
TANC1	0	genome.wustl.edu	37	2	160050772	160050772	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	160050772	160050772	G	A	SNP	TANC1	ENST00000263635	human	ensembl	74_37	+1	known	missense	c.2747	p.S916N	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC1	HGNC	ENSG00000115183				72	0	0	58	4	6.45161
BAZ2B	0	genome.wustl.edu	37	2	160304907	160304907	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	160304907	160304907	C	T	SNP	BAZ2B	ENST00000392783	human	ensembl	74_37	-1	known	nonsense	c.348	p.W116*	1.000	NULL	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_dom,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_Methyl_CpG_DNA-bd,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2B	HGNC	ENSG00000123636				100	0	0	118	8	6.34921
MARCH7	0	genome.wustl.edu	37	2	160605008	160605008	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	160605008	160605008	C	T	SNP	MARCH7	ENST00000259050	human	ensembl	74_37	+1	known	nonsense	c.1207	p.R403*	0.669	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH	-	no_errors	MARCH7	HGNC	ENSG00000136536				144	1	0.689655	91	27	22.8814
PLA2R1	0	genome.wustl.edu	37	2	160832609	160832609	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	160832609	160832609	C	T	SNP	PLA2R1	ENST00000283243	human	ensembl	74_37	-1	known	silent	c.2565	p.E855	1.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin	-	no_errors	PLA2R1	HGNC	ENSG00000153246				134	0	0	90	36	28.5714
RBMS1	0	genome.wustl.edu	37	2	161349809	161349809	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	161349809	161349809	C	T	SNP	RBMS1	ENST00000392753	human	ensembl	74_37	-1	known	silent	c.66	p.L22	0.957	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA	-	no_errors	RBMS1	HGNC	ENSG00000153250				52	0	0	17	6	26.087
TANK	0	genome.wustl.edu	37	2	162081195	162081195	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	162081195	162081195	G	A	SNP	TANK	ENST00000259075	human	ensembl	74_37	+1	known	missense	c.458	p.C153Y	1.000	NULL	NULL	-	no_errors	TANK	HGNC	ENSG00000136560				90	0	0	74	6	7.5
DPP4	0	genome.wustl.edu	37	2	162891760	162891760	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	162891760	162891760	C	T	SNP	DPP4	ENST00000360534	human	ensembl	74_37	-1	known	missense	c.688	p.D230N	1.000	pfam_Peptidase_S9B	pfam_Peptidase_S9B,pfam_Peptidase_S9	-	no_errors	DPP4	HGNC	ENSG00000197635				100	0	0	91	7	7.14286
GCA	0	genome.wustl.edu	37	2	163204223	163204223	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	163204223	163204223	T	A	SNP	GCA	ENST00000437150	human	ensembl	74_37	+1	known	missense	c.163	p.Y55N	1.000	NULL	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	GCA	HGNC	ENSG00000115271				66	0	0	58	4	6.45161
PXDN	0	genome.wustl.edu	37	2	1652167	1652167	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	1652167	1652167	G	A	SNP	PXDN	ENST00000252804	human	ensembl	74_37	-1	known	missense	c.3385	p.R1129C	1.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDN	HGNC	ENSG00000130508				32	0	0	21	5	19.2308
GRB14	0	genome.wustl.edu	37	2	165353759	165353759	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	165353759	165353759	C	A	SNP	GRB14	ENST00000263915	human	ensembl	74_37	-1	known	missense	c.1256	p.S419I	1.000	NULL	pfam_BPS-dom,pfam_SH2,pfam_Ras-assoc,pfam_Pleckstrin_homology,smart_Ras-assoc,smart_Pleckstrin_homology,smart_SH2,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SH2,prints_SH2	-	no_errors	GRB14	HGNC	ENSG00000115290				76	0	0	54	15	21.7391
COBLL1	0	genome.wustl.edu	37	2	165548787	165548787	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	165548787	165548787	G	A	SNP	COBLL1	ENST00000194871	human	ensembl	74_37	-1	known	nonsense	c.3559	p.R1187*	1.000	pfscan_WH2_dom	pfam_Cordon-bleu_ubiquitin_domain,pfscan_WH2_dom	-	no_errors	COBLL1	HGNC	ENSG00000082438				55	0	0	40	9	18.3673
COBLL1	0	genome.wustl.edu	37	2	165550894	165550894	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	165550894	165550894	C	T	SNP	COBLL1	ENST00000194871	human	ensembl	74_37	-1	known	missense	c.3323	p.R1108H	0.000	NULL	pfam_Cordon-bleu_ubiquitin_domain,pfscan_WH2_dom	-	no_errors	COBLL1	HGNC	ENSG00000082438				70	0	0	50	15	23.0769
SCN3A	0	genome.wustl.edu	37	2	165946823	165946823	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	165946823	165946823	T	C	SNP	SCN3A	ENST00000283254	human	ensembl	74_37	-1	known	missense	c.5840	p.D1947G	1.000	NULL	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfscan_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN3A	HGNC	ENSG00000153253				52	0	0	37	15	28.8462
SCN3A	0	genome.wustl.edu	37	2	165997321	165997321	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	165997321	165997321	C	T	SNP	SCN3A	ENST00000283254	human	ensembl	74_37	-1	known	missense	c.1859	p.R620Q	1.000	pfam_DUF3451	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfscan_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN3A	HGNC	ENSG00000153253				66	0	0	46	24	34.2857
SCN2A	0	genome.wustl.edu	37	2	166152416	166152416	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	166152416	166152416	G	A	SNP	SCN2A	ENST00000283256	human	ensembl	74_37	+1	known	missense	c.83	p.R28H	1.000	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531				63	0	0	36	9	20
SCN2A	0	genome.wustl.edu	37	2	166246006	166246006	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	166246006	166246006	C	T	SNP	SCN2A	ENST00000283256	human	ensembl	74_37	+1	known	missense	c.5690	p.T1897M	1.000	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531				80	0	0	58	15	20.5479
CSRNP3	0	genome.wustl.edu	37	2	166514297	166514297	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	166514297	166514297	C	T	SNP	CSRNP3	ENST00000314499	human	ensembl	74_37	+1	known	nonsense	c.175	p.R59*	1.000	NULL	prints_Cys/Ser-rich_nuc_prot	-	no_errors	CSRNP3	HGNC	ENSG00000178662				70	0	0	58	5	7.93651
TTC21B	0	genome.wustl.edu	37	2	166797676	166797676	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	166797676	166797676	G	A	SNP	TTC21B	ENST00000243344	human	ensembl	74_37	-1	known	missense	c.571	p.R191C	0.980	smart_TPR_repeat	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC21B	HGNC	ENSG00000123607				75	0	0	48	18	27.2727
SCN1A	0	genome.wustl.edu	37	2	166900484	166900484	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	166900484	166900484	G	A	SNP	SCN1A	ENST00000303395	human	ensembl	74_37	-1	known	nonsense	c.1738	p.R580*	1.000	pfam_DUF3451	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a1su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN1A	HGNC	ENSG00000144285				106	0	0	74	21	22.1053
SCN9A	0	genome.wustl.edu	37	2	167133677	167133677	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	167133677	167133677	C	T	SNP	SCN9A	ENST00000303354	human	ensembl	74_37	-1	known	missense	c.2693	p.C898Y	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN9A	HGNC	ENSG00000169432				231	0	0	142	54	27.551
SCN9A	0	genome.wustl.edu	37	2	167133746	167133746	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	167133746	167133746	G	A	SNP	SCN9A	ENST00000303354	human	ensembl	74_37	-1	known	missense	c.2624	p.A875V	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN9A	HGNC	ENSG00000169432				215	0	0	175	16	8.37696
SCN7A	0	genome.wustl.edu	37	2	167298020	167298020	+	Silent	SNP	C	C	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	167298020	167298020	C	G	SNP	SCN7A	ENST00000409855	human	ensembl	74_37	-1	known	silent	c.2043	p.V681	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN7A	HGNC	ENSG00000136546				106	0	0	76	28	26.9231
XIRP2	0	genome.wustl.edu	37	2	168099163	168099163	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	168099163	168099163	A	G	SNP	XIRP2	ENST00000295237	human	ensembl	74_37	+1	known	missense	c.1261	p.K421E	0.922	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP2	HGNC	ENSG00000163092				120	0	0	112	6	5.08475
XIRP2	0	genome.wustl.edu	37	2	168107993	168107993	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	168107993	168107993	T	C	SNP	XIRP2	ENST00000295237	human	ensembl	74_37	+1	known	missense	c.10091	p.I3364T	0.000	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP2	HGNC	ENSG00000163092				174	0	0	100	35	25.9259
CERS6	0	genome.wustl.edu	37	2	169404125	169404125	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	169404125	169404125	G	A	SNP	CERS6	ENST00000392687	human	ensembl	74_37	+1	known	missense	c.190	p.A64T	1.000	pirsf_Longevity_assurance_LAG1_LAC1	pfam_TLC-dom,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_TLC-dom,pirsf_Longevity_assurance_LAG1_LAC1,pfscan_TLC-dom,pfscan_Homeobox_dom	-	no_errors	CERS6	HGNC	ENSG00000172292				39	0	0	27	13	32.5
LRP2	0	genome.wustl.edu	37	2	170026232	170026232	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	170026232	170026232	G	A	SNP	LRP2	ENST00000263816	human	ensembl	74_37	-1	known	missense	c.11477	p.A3826V	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479				112	0	0	96	25	20.6612
LRP2	0	genome.wustl.edu	37	2	170032999	170032999	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	170032999	170032999	C	T	SNP	LRP2	ENST00000263816	human	ensembl	74_37	-1	known	missense	c.10493	p.R3498H	0.718	superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479				53	0	0	44	14	24.1379
LRP2	0	genome.wustl.edu	37	2	170037982	170037982	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	170037982	170037982	G	A	SNP	LRP2	ENST00000263816	human	ensembl	74_37	-1	known	missense	c.10145	p.A3382V	1.000	pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479				83	0	0	81	27	25
LRP2	0	genome.wustl.edu	37	2	170048452	170048452	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	170048452	170048452	G	A	SNP	LRP2	ENST00000263816	human	ensembl	74_37	-1	known	silent	c.8922	p.G2974	0.009	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479				111	0	0	60	21	25.9259
LRP2	0	genome.wustl.edu	37	2	170058336	170058336	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	170058336	170058336	G	A	SNP	LRP2	ENST00000263816	human	ensembl	74_37	-1	known	nonsense	c.8254	p.R2752*	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479				95	0	0	78	13	14.2857
LRP2	0	genome.wustl.edu	37	2	170129448	170129448	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	170129448	170129448	C	T	SNP	LRP2	ENST00000263816	human	ensembl	74_37	-1	known	missense	c.2105	p.R702H	0.000	smart_EG-like_dom	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479				395	0	0	248	104	29.5455
BBS5	0	genome.wustl.edu	37	2	170344508	170344508	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	170344508	170344508	C	T	SNP	BBS5	ENST00000443151	human	ensembl	74_37	+1	known	missense	c.154	p.P52S	0.997	NULL	pfam_BBL5	-	no_errors	BBS5	HGNC	ENSG00000163093				137	0	0	94	38	28.7879
MYO3B	0	genome.wustl.edu	37	2	171264268	171264268	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	171264268	171264268	C	A	SNP	MYO3B	ENST00000334231	human	ensembl	74_37	+1	known	missense	c.2591	p.T864N	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3B	HGNC	ENSG00000071909				136	0	0	115	41	26.2821
SP5	0	genome.wustl.edu	37	2	171573002	171573002	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	171573002	171573002	G	A	SNP	SP5	ENST00000375281	human	ensembl	74_37	+1	known	silent	c.285	p.T95	0.900	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP5	HGNC	ENSG00000204335				11	0	0	5	4	44.4444
SLC25A12	0	genome.wustl.edu	37	2	172641950	172641950	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	172641950	172641950	C	T	SNP	SLC25A12	ENST00000422440	human	ensembl	74_37	-1	known	missense	c.1871	p.R624H	0.999	NULL	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A12	HGNC	ENSG00000115840				79	0	0	80	24	23.0769
DLX2	0	genome.wustl.edu	37	2	172966308	172966308	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	172966308	172966308	C	T	SNP	DLX2	ENST00000234198	human	ensembl	74_37	-1	known	missense	c.467	p.R156H	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,pfam_Distal-less_N,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	DLX2	HGNC	ENSG00000115844				67	0	0	48	17	26.1538
PDK1	0	genome.wustl.edu	37	2	173429383	173429383	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	173429383	173429383	G	A	SNP	PDK1	ENST00000282077	human	ensembl	74_37	+1	known	missense	c.563	p.R188H	1.000	pfam_BCDHK/PDK_N,superfamily_BCDHK/PDK_N	pfam_BCDHK/PDK_N,pfam_HATPase_ATP-bd,superfamily_BCDHK/PDK_N,superfamily_HATPase_ATP-bd,smart_HATPase_ATP-bd,pfscan_Sig_transdc_His_kinase_core	-	no_errors	PDK1	HGNC	ENSG00000152256				91	0	0	67	17	20.2381
SP3	0	genome.wustl.edu	37	2	174774752	174774752	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	174774752	174774752	C	T	SNP	SP3	ENST00000310015	human	ensembl	74_37	-1	known	missense	c.2263	p.A755T	0.997	NULL	pfam_Znf_C2H2,superfamily_Galactose-bd-like,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP3	HGNC	ENSG00000172845				82	0	0	91	7	7.14286
KIAA1715	0	genome.wustl.edu	37	2	176794704	176794704	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	176794704	176794704	C	T	SNP	KIAA1715	ENST00000544803	human	ensembl	74_37	-1	known	silent	c.1371	p.T457	0.920	NULL	pfam_DUF2296	-	no_errors	KIAA1715	HGNC	ENSG00000144320				102	0	0	73	14	16.092
HOXD13	0	genome.wustl.edu	37	2	176958345	176958345	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	176958345	176958345	T	C	SNP	HOXD13	ENST00000392539	human	ensembl	74_37	+1	putative	missense	c.727	p.Y243H	1.000	NULL	pfam_Homeobox_dom,pfam_HoxA13_N,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	HOXD13	HGNC	ENSG00000128714				33	0	0	25	5	16.6667
HOXD10	0	genome.wustl.edu	37	2	176982113	176982113	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	176982113	176982113	C	T	SNP	HOXD10	ENST00000249501	human	ensembl	74_37	+1	known	silent	c.552	p.G184	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,prints_Homeobox_metazoa,pfscan_Homeobox_dom	-	no_errors	HOXD10	HGNC	ENSG00000128710				61	0	0	33	13	28.2609
HOXD3	0	genome.wustl.edu	37	2	177036882	177036882	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	177036882	177036882	G	A	SNP	HOXD3	ENST00000249440	human	ensembl	74_37	+1	known	silent	c.1179	p.A393	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXD3	HGNC	ENSG00000128652				35	0	0	18	7	28
PDE11A	0	genome.wustl.edu	37	2	178879125	178879125	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	178879125	178879125	G	A	SNP	PDE11A	ENST00000286063	human	ensembl	74_37	-1	known	silent	c.975	p.C325	1.000	pfam_GAF,smart_GAF	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE11A	HGNC	ENSG00000128655				79	0	0	58	21	26.5823
PDE11A	0	genome.wustl.edu	37	2	178936644	178936644	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	178936644	178936644	G	A	SNP	PDE11A	ENST00000286063	human	ensembl	74_37	-1	known	missense	c.521	p.A174V	1.000	NULL	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE11A	HGNC	ENSG00000128655				110	0	0	58	22	27.5
OSBPL6	0	genome.wustl.edu	37	2	179214085	179214085	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	179214085	179214085	G	A	SNP	OSBPL6	ENST00000315022	human	ensembl	74_37	+1	known	silent	c.1134	p.L378	0.995	NULL	pfam_Oxysterol-bd,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL6	HGNC	ENSG00000079156				147	0	0	112	32	22.2222
PRKRA	0	genome.wustl.edu	37	2	179312289	179312289	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	179312289	179312289	G	A	SNP	PRKRA	ENST00000325748	human	ensembl	74_37	-1	known	missense	c.260	p.A87V	1.000	pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,pfscan_dsRNA-bd_dom	pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,pfscan_dsRNA-bd_dom	-	no_errors	PRKRA	HGNC	ENSG00000180228				86	0	0	79	5	5.95238
DFNB59	0	genome.wustl.edu	37	2	179325727	179325727	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	179325727	179325727	T	C	SNP	DFNB59	ENST00000375129	human	ensembl	74_37	+1	known	missense	c.785	p.V262A	1.000	NULL	pfam_Gasdermin	-	no_errors	DFNB59	HGNC	ENSG00000204311				141	0	0	167	12	6.70391
TTN	0	genome.wustl.edu	37	2	179393094	179393094	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	179393094	179393094	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	nonsense	c.99580	p.R33194*	0.998	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				71	0	0	47	33	41.25
TTN	0	genome.wustl.edu	37	2	179404438	179404438	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	179404438	179404438	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.90650	p.A30217V	0.997	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				173	0	0	129	12	8.51064
TTN	0	genome.wustl.edu	37	2	179412259	179412259	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	179412259	179412259	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.86390	p.R28797H	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				45	0	0	37	21	36.2069
TTN	0	genome.wustl.edu	37	2	179417232	179417232	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	179417232	179417232	T	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.82691	p.D27564G	1.000	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				65	0	0	55	17	23.6111
TTN	0	genome.wustl.edu	37	2	179417976	179417976	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	179417976	179417976	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.81947	p.A27316V	0.998	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				200	0	0	132	58	30.5263
TTN	0	genome.wustl.edu	37	2	179422671	179422671	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	179422671	179422671	C	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.79706	p.R26569M	1.000	superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				256	0	0	201	69	25.5556
TTN	0	genome.wustl.edu	37	2	179444834	179444834	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	179444834	179444834	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.59476	p.R19826C	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				139	0	0	105	32	23.3577
TTN	0	genome.wustl.edu	37	2	179498195	179498195	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	179498195	179498195	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.35187	p.G11729	0.995	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				60	0	0	47	14	22.9508
TTN	0	genome.wustl.edu	37	2	179530112	179530112	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	179530112	179530112	C	T	SNP	TTN	ENST00000589042	human	ensembl	74_37	-1	putative	missense	c.36035	p.R12012H	0.000	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_PPAK_motif,pfam_Titin_Z,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,superfamily_ARM-type_fold,superfamily_P-loop_NTPase,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				175	0	0	145	13	8.22785
TTN	0	genome.wustl.edu	37	2	179549074	179549074	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	179549074	179549074	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.28973	p.A9658V	1.000	pfam_PPAK_motif,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				51	0	0	24	8	25
TTN	0	genome.wustl.edu	37	2	179582535	179582535	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	179582535	179582535	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.21334	p.R7112C	1.000	superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				57	0	0	49	17	25.7576
TTN	0	genome.wustl.edu	37	2	179597674	179597674	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	179597674	179597674	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.12497	p.G4166D	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				35	0	0	26	14	35
TTN	0	genome.wustl.edu	37	2	179604723	179604723	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	179604723	179604723	C	A	SNP	TTN	ENST00000342175	human	ensembl	74_37	-1	known	missense	c.12724	p.G4242C	0.121	superfamily_RNaseH-like_dom	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				101	0	0	72	22	23.4043
TTN	0	genome.wustl.edu	37	2	179633400	179633400	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	179633400	179633400	C	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.9163	p.A3055S	1.000	superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				64	0	0	48	5	9.43396
TTN	0	genome.wustl.edu	37	2	179640598	179640598	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	179640598	179640598	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.5993	p.R1998H	1.000	superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				123	0	0	101	49	32.6667
TTN	0	genome.wustl.edu	37	2	179648867	179648867	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	179648867	179648867	A	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.2705	p.V902A	0.246	superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				96	0	0	89	5	5.31915
TTN	0	genome.wustl.edu	37	2	179648990	179648990	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	179648990	179648990	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.2582	p.A861V	1.000	superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				80	0	0	51	21	29.1667
TTN	0	genome.wustl.edu	37	2	179665162	179665162	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	179665162	179665162	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.543	p.S181	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				216	0	0	169	12	6.62983
TTN	0	genome.wustl.edu	37	2	179666955	179666955	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	179666955	179666955	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.205	p.A69T	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				134	0	0	67	34	33.6634
CCDC141	0	genome.wustl.edu	37	2	179732869	179732869	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	179732869	179732869	C	T	SNP	CCDC141	ENST00000420890	human	ensembl	74_37	-1	known	missense	c.2458	p.A820T	0.001	NULL	pfam_Ig_I-set,pfam_Spectrin_repeat,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	CCDC141	HGNC	ENSG00000163492				78	0	0	52	16	23.5294
SESTD1	0	genome.wustl.edu	37	2	179974726	179974726	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	179974726	179974726	T	C	SNP	SESTD1	ENST00000428443	human	ensembl	74_37	-1	known	missense	c.1991	p.D664G	1.000	NULL	superfamily_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	SESTD1	HGNC	ENSG00000187231				68	0	0	52	11	17.4603
SESTD1	0	genome.wustl.edu	37	2	180047900	180047900	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	180047900	180047900	C	T	SNP	SESTD1	ENST00000428443	human	ensembl	74_37	-1	known	missense	c.71	p.R24Q	1.000	superfamily_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	superfamily_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	SESTD1	HGNC	ENSG00000187231				50	0	0	47	17	26.5625
CWC22	0	genome.wustl.edu	37	2	180851449	180851449	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	180851449	180851449	C	T	SNP	CWC22	ENST00000295749	human	ensembl	74_37	-1	known	missense	c.179	p.R60H	0.881	NULL	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI	-	no_errors	CWC22	HGNC	ENSG00000163510				39	0	0	25	11	30.5556
NEUROD1	0	genome.wustl.edu	37	2	182542954	182542954	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	182542954	182542954	C	T	SNP	NEUROD1	ENST00000295108	human	ensembl	74_37	-1	known	missense	c.634	p.A212T	1.000	pfam_Neurogenic_DUF,pirsf_TF_bHLH_NeuroD	pfam_Neurogenic_DUF,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pirsf_TF_bHLH_NeuroD,pfscan_bHLH_dom	-	no_errors	NEUROD1	HGNC	ENSG00000162992				62	0	0	32	16	33.3333
SSFA2	0	genome.wustl.edu	37	2	182786932	182786932	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	182786932	182786932	G	A	SNP	SSFA2	ENST00000431877	human	ensembl	74_37	+1	known	silent	c.3468	p.T1156	0.550	NULL	NULL	-	no_errors	SSFA2	HGNC	ENSG00000138434				190	0	0	181	14	7.17949
FRZB	0	genome.wustl.edu	37	2	183730941	183730941	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	183730941	183730941	G	A	SNP	FRZB	ENST00000295113	human	ensembl	74_37	-1	known	missense	c.340	p.R114W	1.000	pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom	pfam_Frizzled_dom,pfam_Netrin_module_non-TIMP,superfamily_Frizzled_dom,superfamily_TIMP-like_OB-fold,smart_Frizzled_dom,smart_Netrin_module_non-TIMP,pfscan_Frizzled_dom,pfscan_Netrin_domain	-	no_errors	FRZB	HGNC	ENSG00000162998				22	0	0	24	9	27.2727
MYT1L	0	genome.wustl.edu	37	2	1855433	1855433	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	1855433	1855433	G	A	SNP	MYT1L	ENST00000399161	human	ensembl	74_37	-1	known	silent	c.2754	p.G918	1.000	pfam_Znf_C2HC	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	MYT1L	HGNC	ENSG00000186487				152	0	0	97	28	22.4
ZNF804A	0	genome.wustl.edu	37	2	185800759	185800759	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	185800759	185800759	C	T	SNP	ZNF804A	ENST00000302277	human	ensembl	74_37	+1	known	silent	c.636	p.I212	0.978	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804A	HGNC	ENSG00000170396				96	0	0	77	6	7.22892
NT5C1B	0	genome.wustl.edu	37	2	18764161	18764161	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	18764161	18764161	G	A	SNP	NT5C1B	ENST00000359846	human	ensembl	74_37	-1	known	missense	c.1174	p.R392W	1.000	pfam_5-nucleotidase	pfam_5-nucleotidase	-	no_errors	NT5C1B	HGNC	ENSG00000185013				74	0	0	48	16	25
NT5C1B	0	genome.wustl.edu	37	2	18768433	18768433	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	18768433	18768433	G	A	SNP	NT5C1B	ENST00000359846	human	ensembl	74_37	-1	known	missense	c.127	p.R43C	1.000	NULL	pfam_5-nucleotidase	-	no_errors	NT5C1B	HGNC	ENSG00000185013				30	0	0	25	3	10.7143
CALCRL	0	genome.wustl.edu	37	2	188247920	188247920	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	188247920	188247920	T	C	SNP	CALCRL	ENST00000392370	human	ensembl	74_37	-1	known	missense	c.164	p.D55G	1.000	pfscan_GPCR_2_extracellular_dom,prints_GCPR_2_calcitonin_rcpt_fam,prints_GPCR_2_CGRP1_rcpt,prints_GPCR_2_calcitonin_rcpt	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GCPR_2_calcitonin_rcpt_fam,prints_GPCR_2_CGRP1_rcpt,prints_GPCR_2_secretin-like,prints_GPCR_2_calcitonin_rcpt	-	no_errors	CALCRL	HGNC	ENSG00000064989				91	0	0	84	5	5.61798
SLC40A1	0	genome.wustl.edu	37	2	190445148	190445148	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	190445148	190445148	G	A	SNP	SLC40A1	ENST00000261024	human	ensembl	74_37	-1	known	silent	c.39	p.C13	1.000	superfamily_MFS_dom_general_subst_transpt	pfam_Ferroportin-1,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC40A1	HGNC	ENSG00000138449				81	0	0	61	17	21.7949
ANKAR	0	genome.wustl.edu	37	2	190593148	190593148	+	Splice_Site	SNP	T	T	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	190593148	190593148	T	A	SNP	ANKAR	ENST00000313581	human	ensembl	74_37	+1	known	splice_site	c.3031+2	e13+2	1.000	-	-	-	no_errors	ANKAR	HGNC	ENSG00000151687				45	0	0	38	4	9.52381
PMS1	0	genome.wustl.edu	37	2	190660570	190660570	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	190660570	190660570	G	A	SNP	PMS1	ENST00000441310	human	ensembl	74_37	+1	known	missense	c.208	p.A70T	1.000	pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,tigrfam_DNA_mismatch_repair_N	pfam_DNA_mismatch_repair_C,pfam_HMG_box_dom,pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom,tigrfam_DNA_mismatch_repair_N	-	no_errors	PMS1	HGNC	ENSG00000064933				71	0	0	93	9	8.82353
MFSD6	0	genome.wustl.edu	37	2	191301738	191301738	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	191301738	191301738	G	A	SNP	MFSD6	ENST00000281416	human	ensembl	74_37	+1	known	missense	c.983	p.R328H	1.000	superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD6	HGNC	ENSG00000151690				85	0	0	85	6	6.59341
OSR1	0	genome.wustl.edu	37	2	19552979	19552979	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	19552979	19552979	C	T	SNP	OSR1	ENST00000272223	human	ensembl	74_37	-1	known	silent	c.588	p.T196	0.439	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	OSR1	HGNC	ENSG00000143867				93	0	0	38	19	33.3333
DNAH7	0	genome.wustl.edu	37	2	196673563	196673563	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	196673563	196673563	C	T	SNP	DNAH7	ENST00000312428	human	ensembl	74_37	-1	known	missense	c.9926	p.G3309D	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_hand_dom	-	no_errors	DNAH7	HGNC	ENSG00000118997				46	0	0	55	6	9.83607
DNAH7	0	genome.wustl.edu	37	2	196718175	196718175	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	196718175	196718175	G	A	SNP	DNAH7	ENST00000312428	human	ensembl	74_37	-1	known	silent	c.8673	p.S2891	0.653	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_hand_dom	-	no_errors	DNAH7	HGNC	ENSG00000118997				64	0	0	65	4	5.7971
DNAH7	0	genome.wustl.edu	37	2	196771409	196771409	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	196771409	196771409	G	A	SNP	DNAH7	ENST00000312428	human	ensembl	74_37	-1	known	nonsense	c.4309	p.R1437*	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_hand_dom	-	no_errors	DNAH7	HGNC	ENSG00000118997				95	0	0	79	14	15.0538
CCDC150	0	genome.wustl.edu	37	2	197521851	197521851	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	197521851	197521851	G	A	SNP	CCDC150	ENST00000389175	human	ensembl	74_37	+1	known	silent	c.567	p.S189	0.935	NULL	NULL	-	no_errors	CCDC150	HGNC	ENSG00000144395				115	0	0	83	9	9.78261
PGAP1	0	genome.wustl.edu	37	2	197763060	197763060	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	197763060	197763060	C	A	SNP	PGAP1	ENST00000354764	human	ensembl	74_37	-1	known	missense	c.841	p.D281Y	1.000	pfam_PGAP1-like	pfam_PGAP1-like	-	no_errors	PGAP1	HGNC	ENSG00000197121				64	0	0	50	21	29.5775
ANKRD44	0	genome.wustl.edu	37	2	197987425	197987425	+	Silent	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	197987425	197987425	G	T	SNP	ANKRD44	ENST00000328737	human	ensembl	74_37	-1	known	silent	c.567	p.A189	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD44	HGNC	ENSG00000065413				56	0	0	55	8	12.6984
PLCL1	0	genome.wustl.edu	37	2	198950276	198950276	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	198950276	198950276	G	A	SNP	PLCL1	ENST00000428675	human	ensembl	74_37	+1	known	missense	c.2035	p.D679N	1.000	pfam_PLipase_C_Pinositol-sp_Y,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_Pinositol-sp_Y,pfscan_PLipase_C_Pinositol-sp_Y	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCL1	HGNC	ENSG00000115896				92	0	0	70	23	24.7312
SATB2	0	genome.wustl.edu	37	2	200298074	200298074	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	200298074	200298074	C	T	SNP	SATB2	ENST00000260926	human	ensembl	74_37	-1	known	silent	c.333	p.A111	0.000	NULL	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	SATB2	HGNC	ENSG00000119042				60	0	0	55	19	25.6757
WDR35	0	genome.wustl.edu	37	2	20113444	20113444	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	20113444	20113444	C	T	SNP	WDR35	ENST00000345530	human	ensembl	74_37	-1	known	missense	c.3421	p.V1141I	0.980	pirsf_WD_repeat_p35	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pirsf_WD_repeat_p35,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR35	HGNC	ENSG00000118965				90	0	0	100	8	7.40741
WDR35	0	genome.wustl.edu	37	2	20136078	20136078	+	Silent	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	20136078	20136078	T	C	SNP	WDR35	ENST00000345530	human	ensembl	74_37	-1	known	silent	c.2349	p.V783	0.965	pirsf_WD_repeat_p35	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pirsf_WD_repeat_p35,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR35	HGNC	ENSG00000118965				103	0	0	66	5	7.04225
KCTD18	0	genome.wustl.edu	37	2	201369584	201369584	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	201369584	201369584	C	T	SNP	KCTD18	ENST00000359878	human	ensembl	74_37	-1	known	missense	c.259	p.A87T	0.998	pfam_T1-type_BTB,superfamily_BTB/POZ_fold	pfam_T1-type_BTB,superfamily_BTB/POZ_fold	-	no_errors	KCTD18	HGNC	ENSG00000155729				75	0	0	68	6	8.10811
SGOL2	0	genome.wustl.edu	37	2	201437568	201437568	+	Silent	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	201437568	201437568	A	G	SNP	SGOL2	ENST00000357799	human	ensembl	74_37	+1	known	silent	c.2499	p.V833	0.000	NULL	NULL	-	no_errors	SGOL2	HGNC	ENSG00000163535				115	0	0	140	12	7.89474
CLK1	0	genome.wustl.edu	37	2	201721521	201721521	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	201721521	201721521	C	T	SNP	CLK1	ENST00000321356	human	ensembl	74_37	-1	known	missense	c.941	p.R314H	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CLK1	HGNC	ENSG00000013441				111	0	0	50	30	37.5
FAM117B	0	genome.wustl.edu	37	2	203622048	203622048	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	203622048	203622048	A	G	SNP	FAM117B	ENST00000392238	human	ensembl	74_37	+1	known	missense	c.1217	p.N406S	1.000	NULL	NULL	-	no_errors	FAM117B	HGNC	ENSG00000138439				65	0	0	52	4	7.14286
RAPH1	0	genome.wustl.edu	37	2	204354353	204354353	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	204354353	204354353	C	T	SNP	RAPH1	ENST00000374493	human	ensembl	74_37	-1	known	missense	c.686	p.R229H	0.997	NULL	pfam_Ras-assoc,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Ras-assoc,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,prints_Paxillin	-	no_errors	RAPH1	HGNC	ENSG00000173166				160	0	0	93	23	19.8276
PARD3B	0	genome.wustl.edu	37	2	205986630	205986630	+	Silent	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	205986630	205986630	C	A	SNP	PARD3B	ENST00000406610	human	ensembl	74_37	+1	known	silent	c.1122	p.G374	0.999	superfamily_PDZ	pfam_DUF3534,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PARD3B	HGNC	ENSG00000116117				70	0	0	57	15	20.8333
NRP2	0	genome.wustl.edu	37	2	206608199	206608199	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	206608199	206608199	C	T	SNP	NRP2	ENST00000360409	human	ensembl	74_37	+1	known	missense	c.1564	p.R522C	1.000	pirsf_Neuropilin,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pirsf_Neuropilin,pfam_CUB_dom,pfam_Coagulation_fac_5/8-C_type_dom,pfam_MAM_dom,pfam_Neuropilin1_C,superfamily_Galactose-bd-like,superfamily_CUB_dom,superfamily_ConA-like_lec_gl_sf,smart_CUB_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_MAM_dom,prints_MAM_dom,pfscan_CUB_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_MAM_dom	-	no_errors	NRP2	HGNC	ENSG00000118257				64	0	0	48	14	22.5806
EEF1B2	0	genome.wustl.edu	37	2	207026140	207026140	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	207026140	207026140	G	A	SNP	EEF1B2	ENST00000236957	human	ensembl	74_37	+1	known	missense	c.274	p.A92T	1.000	NULL	pfam_Transl_elong_fac_EF1B_bsu/dsu,pfam_EF-1_beta_acid_region_euk,superfamily_Transl_elong_fac_EF1B_bsu/dsu,superfamily_Glutathione-S-Trfase_C-like,smart_Transl_elong_fac_EF1B_bsu/dsu	-	no_errors	EEF1B2	HGNC	ENSG00000114942				164	0	0	97	40	29.1971
ZDBF2	0	genome.wustl.edu	37	2	207170556	207170556	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	207170556	207170556	G	A	SNP	ZDBF2	ENST00000374423	human	ensembl	74_37	+1	known	missense	c.1304	p.R435H	0.000	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186				96	0	0	80	18	18.3673
ZDBF2	0	genome.wustl.edu	37	2	207175899	207175899	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	207175899	207175899	G	A	SNP	ZDBF2	ENST00000374423	human	ensembl	74_37	+1	known	missense	c.6647	p.R2216Q	0.000	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186				68	0	0	57	6	9.52381
ADAM23	0	genome.wustl.edu	37	2	207406814	207406814	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	207406814	207406814	C	T	SNP	ADAM23	ENST00000264377	human	ensembl	74_37	+1	known	silent	c.612	p.G204	0.063	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM23	HGNC	ENSG00000114948				124	0	0	99	13	11.6071
MDH1B	0	genome.wustl.edu	37	2	207619807	207619807	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	207619807	207619807	A	T	SNP	MDH1B	ENST00000374412	human	ensembl	74_37	-1	known	missense	c.836	p.I279N	0.275	NULL	pfam_Lactate/malate_DH_C,superfamily_Lactate_DH/Glyco_Ohase_4_C	-	no_errors	MDH1B	HGNC	ENSG00000138400				90	0	0	91	6	6.18557
PLEKHM3	0	genome.wustl.edu	37	2	208795695	208795695	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	208795695	208795695	T	G	SNP	PLEKHM3	ENST00000427836	human	ensembl	74_37	-1	known	missense	c.1841	p.Y614S	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHM3	HGNC	ENSG00000178385				56	0	0	52	5	8.77193
CRYGA	0	genome.wustl.edu	37	2	209025726	209025726	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	209025726	209025726	G	A	SNP	CRYGA	ENST00000304502	human	ensembl	74_37	-1	known	silent	c.327	p.C109	0.986	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYGA	HGNC	ENSG00000168582				91	0	0	49	19	27.9412
UNC80	0	genome.wustl.edu	37	2	210782542	210782542	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	210782542	210782542	G	A	SNP	UNC80	ENST00000439458	human	ensembl	74_37	+1	known	missense	c.4873	p.V1625M	1.000	NULL	NULL	-	no_errors	UNC80	HGNC	ENSG00000144406				11	0	0	7	6	46.1538
LANCL1	0	genome.wustl.edu	37	2	211302452	211302452	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	211302452	211302452	C	T	SNP	LANCL1	ENST00000233714	human	ensembl	74_37	-1	known	missense	c.835	p.A279T	0.853	pfam_LANC-like,superfamily_6-hairpin_glycosidase-like,prints_LANC-like	pfam_LANC-like,superfamily_6-hairpin_glycosidase-like,prints_LanC-like_prot_euk,prints_LANC-like	-	no_errors	LANCL1	HGNC	ENSG00000115365				69	0	0	41	24	36.9231
CPS1	0	genome.wustl.edu	37	2	211507258	211507258	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	211507258	211507258	C	T	SNP	CPS1	ENST00000430249	human	ensembl	74_37	+1	known	missense	c.3028	p.R1010C	1.000	pfam_CarbamoylP_synth_lsu_N,superfamily_PreATP-grasp_dom,tigrfam_CarbamoylP_synth_lsu	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_CarbamoylP_synth_lsu_oligo,pfam_GATASE,pfam_CarbamoylP_synth_lsu_N,pfam_MGS-like_dom,pfam_ATP-grasp_carboxylate-amine,pfam_Dala_Dala_lig_C,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_dom,superfamily_MGS-like_dom,smart_MGS-like_dom,pfscan_ATP-grasp,prints_CbamoylP_synth_lsu_CPSase_dom,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu	-	no_errors	CPS1	HGNC	ENSG00000021826				87	0	0	84	6	6.66667
ERBB4	0	genome.wustl.edu	37	2	212522697	212522697	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	212522697	212522697	C	T	SNP	ERBB4	ENST00000402597	human	ensembl	74_37	-1	known	missense	c.1894	p.D632N	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB4	HGNC	ENSG00000178568				95	0	0	76	10	11.6279
FN1	0	genome.wustl.edu	37	2	216269111	216269111	+	Splice_Site	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	216269111	216269111	C	T	SNP	FN1	ENST00000354785	human	ensembl	74_37	-1	known	splice_site	c.3253+1	e20+1	1.000	-	-	-	no_errors	FN1	HGNC	ENSG00000115414				103	0	0	78	21	21.2121
FN1	0	genome.wustl.edu	37	2	216298122	216298122	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	216298122	216298122	G	A	SNP	FN1	ENST00000354785	human	ensembl	74_37	-1	known	missense	c.340	p.R114C	1.000	pfam_Fibronectin_type1,smart_Fibronectin_type1,pfscan_Fibronectin_type1	pfam_Fibronectin_type3,pfam_Fibronectin_type1,pfam_FN_type2_col-bd,superfamily_Kringle-like,superfamily_Fibronectin_type3,smart_Fibronectin_type1,smart_FN_type2_col-bd,smart_Fibronectin_type3,pfscan_Fibronectin_type1,pfscan_FN_type2_col-bd,pfscan_Fibronectin_type3	-	no_errors	FN1	HGNC	ENSG00000115414				90	0	0	64	20	23.8095
TNS1	0	genome.wustl.edu	37	2	218682847	218682847	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	218682847	218682847	C	T	SNP	TNS1	ENST00000171887	human	ensembl	74_37	-1	known	missense	c.3896	p.S1299N	1.000	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_dom,smart_Tyr_Pase_cat,smart_SH2,smart_PTB/PI_dom,pfscan_SH2,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS1	HGNC	ENSG00000079308				26	0	0	12	5	29.4118
TNS1	0	genome.wustl.edu	37	2	218751283	218751283	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	218751283	218751283	C	T	SNP	TNS1	ENST00000171887	human	ensembl	74_37	-1	known	missense	c.578	p.G193D	1.000	pfam_Tensin_phosphatase_C2-dom,superfamily_C2_dom,pfscan_Tensin_phosphatase_C2-dom	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_dom,smart_Tyr_Pase_cat,smart_SH2,smart_PTB/PI_dom,pfscan_SH2,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS1	HGNC	ENSG00000079308				18	0	0	9	3	25
ARPC2	0	genome.wustl.edu	37	2	219104245	219104245	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	219104245	219104245	C	T	SNP	ARPC2	ENST00000462034	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	ARPC2	HGNC	ENSG00000163466				39	0	0	21	12	36.3636
ZNF142	0	genome.wustl.edu	37	2	219503385	219503385	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	219503385	219503385	G	A	SNP	ZNF142	ENST00000411696	human	ensembl	74_37	-1	known	missense	c.4741	p.R1581C	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF142	HGNC	ENSG00000115568				42	0	0	28	6	17.6471
RNF25	0	genome.wustl.edu	37	2	219528910	219528910	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	219528910	219528910	C	T	SNP	RNF25	ENST00000295704	human	ensembl	74_37	-1	known	missense	c.1150	p.D384N	1.000	NULL	pfam_RWD-domain,superfamily_UBQ-conjugating_enzyme/RWD,smart_RWD-domain,smart_Znf_RING,pfscan_RWD-domain,pfscan_Znf_RING	-	no_errors	RNF25	HGNC	ENSG00000163481				99	0	0	87	24	21.6216
CCDC108	0	genome.wustl.edu	37	2	219892449	219892449	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	219892449	219892449	C	T	SNP	CCDC108	ENST00000341552	human	ensembl	74_37	-1	known	missense	c.2134	p.A712T	0.991	NULL	superfamily_PapD-like,pfscan_MSP_dom	-	no_errors	CCDC108	HGNC	ENSG00000181378				101	0	0	41	24	36.9231
CCDC108	0	genome.wustl.edu	37	2	219893010	219893010	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	219893010	219893010	C	T	SNP	CCDC108	ENST00000341552	human	ensembl	74_37	-1	known	silent	c.1764	p.T588	0.001	NULL	superfamily_PapD-like,pfscan_MSP_dom	-	no_errors	CCDC108	HGNC	ENSG00000181378				44	0	0	44	6	12
CCDC108	0	genome.wustl.edu	37	2	219895460	219895460	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	219895460	219895460	G	A	SNP	CCDC108	ENST00000341552	human	ensembl	74_37	-1	known	missense	c.1112	p.A371V	0.847	NULL	superfamily_PapD-like,pfscan_MSP_dom	-	no_errors	CCDC108	HGNC	ENSG00000181378				59	0	0	26	10	27.7778
IHH	0	genome.wustl.edu	37	2	219920499	219920499	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	219920499	219920499	G	A	SNP	IHH	ENST00000295731	human	ensembl	74_37	-1	known	silent	c.666	p.A222	0.005	pirsf_Hedgehog,pfam_Hint_dom,smart_Hint_dom_N,pfscan_Intein_splice_site	pirsf_Hedgehog,pfam_Hedgehog_signaling_dom,pfam_Hint_dom,superfamily_Hedgehog_sig/DD-Pept_Zn-bd_dom,smart_Hint_dom_N,smart_Hint_dom_C,prints_Hedgehog,pfscan_Intein_splice_site	-	no_errors	IHH	HGNC	ENSG00000163501				27	0	0	15	4	21.0526
DNAJB2	0	genome.wustl.edu	37	2	220145307	220145307	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	220145307	220145307	C	T	SNP	DNAJB2	ENST00000336576	human	ensembl	74_37	+1	known	missense	c.73	p.R25C	0.003	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,smart_Ubiquitin-int_motif,pfscan_Ubiquitin-int_motif,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJB2	HGNC	ENSG00000135924				43	0	0	26	6	18.75
OBSL1	0	genome.wustl.edu	37	2	220432875	220432875	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	220432875	220432875	C	T	SNP	OBSL1	ENST00000404537	human	ensembl	74_37	-1	known	missense	c.1184	p.R395Q	0.985	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	OBSL1	HGNC	ENSG00000124006				28	0	0	20	10	33.3333
EPHA4	0	genome.wustl.edu	37	2	222301233	222301233	+	Silent	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	222301233	222301233	A	G	SNP	EPHA4	ENST00000281821	human	ensembl	74_37	-1	known	silent	c.2232	p.H744	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA4	HGNC	ENSG00000116106				116	0	0	111	10	8.26446
CCDC140	0	genome.wustl.edu	37	2	223168902	223168902	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	223168902	223168902	C	T	SNP	CCDC140	ENST00000295226	human	ensembl	74_37	+1	known	missense	c.281	p.A94V	0.000	NULL	NULL	-	no_errors	CCDC140	HGNC	ENSG00000163081				15	0	0	11	4	26.6667
SCG2	0	genome.wustl.edu	37	2	224463687	224463687	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	224463687	224463687	A	G	SNP	SCG2	ENST00000305409	human	ensembl	74_37	-1	known	missense	c.314	p.L105P	0.986	pfam_Granin	pfam_Granin	-	no_errors	SCG2	HGNC	ENSG00000171951				106	0	0	100	43	30.0699
WDFY1	0	genome.wustl.edu	37	2	224758990	224758990	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	224758990	224758990	G	A	SNP	WDFY1	ENST00000233055	human	ensembl	74_37	-1	known	silent	c.792	p.G264	0.232	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Znf_FYVE,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,smart_WD40_repeat,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDFY1	HGNC	ENSG00000085449				69	0	0	32	14	30.4348
NYAP2	0	genome.wustl.edu	37	2	226447052	226447052	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	226447052	226447052	G	A	SNP	NYAP2	ENST00000272907	human	ensembl	74_37	+1	known	missense	c.919	p.A307T	1.000	NULL	NULL	-	no_errors	NYAP2	HGNC	ENSG00000144460				75	0	0	32	14	30.4348
IRS1	0	genome.wustl.edu	37	2	227660941	227660941	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	227660941	227660941	C	T	SNP	IRS1	ENST00000305123	human	ensembl	74_37	-1	known	silent	c.2514	p.Q838	0.973	NULL	pfam_Insln_rcpt_S1,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,prints_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1	-	no_errors	IRS1	HGNC	ENSG00000169047				45	0	0	32	9	21.9512
IRS1	0	genome.wustl.edu	37	2	227662528	227662528	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	227662528	227662528	G	A	SNP	IRS1	ENST00000305123	human	ensembl	74_37	-1	known	silent	c.927	p.T309	0.000	NULL	pfam_Insln_rcpt_S1,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,prints_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1	-	no_errors	IRS1	HGNC	ENSG00000169047				46	0	0	35	12	25.5319
SLC19A3	0	genome.wustl.edu	37	2	228564079	228564079	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	228564079	228564079	C	T	SNP	SLC19A3	ENST00000258403	human	ensembl	74_37	-1	known	missense	c.352	p.A118T	0.996	pfam_Folate_carrier,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pirsf_Folate_carrier,tigrfam_Folate_carrier	pfam_Folate_carrier,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pirsf_Folate_carrier,tigrfam_Folate_carrier	-	no_errors	SLC19A3	HGNC	ENSG00000135917				123	0	0	75	18	19.3548
SPHKAP	0	genome.wustl.edu	37	2	228882781	228882781	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	228882781	228882781	G	A	SNP	SPHKAP	ENST00000392056	human	ensembl	74_37	-1	known	missense	c.2789	p.A930V	1.000	NULL	pfam_AKAP_110_C	-	no_errors	SPHKAP	HGNC	ENSG00000153820				168	0	0	153	14	8.38323
SPHKAP	0	genome.wustl.edu	37	2	228883827	228883827	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	228883827	228883827	G	A	SNP	SPHKAP	ENST00000392056	human	ensembl	74_37	-1	known	silent	c.1743	p.C581	0.010	NULL	pfam_AKAP_110_C	-	no_errors	SPHKAP	HGNC	ENSG00000153820				71	0	0	40	13	24.5283
DNER	0	genome.wustl.edu	37	2	230223321	230223321	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	230223321	230223321	C	T	SNP	DNER	ENST00000341772	human	ensembl	74_37	-1	known	missense	c.2149	p.A717T	0.990	NULL	pfam_EG-like_dom,pfam_EGF_extracell,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	DNER	HGNC	ENSG00000187957				79	0	0	81	5	5.81395
TRIP12	0	genome.wustl.edu	37	2	230643195	230643195	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	230643195	230643195	C	T	SNP	TRIP12	ENST00000283943	human	ensembl	74_37	-1	known	missense	c.5093	p.R1698H	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,superfamily_HECT,superfamily_ARM-type_fold,smart_HECT,pfscan_HECT,pfscan_WWE-dom	-	no_errors	TRIP12	HGNC	ENSG00000153827				138	0	0	128	34	20.9877
TRIP12	0	genome.wustl.edu	37	2	230672494	230672494	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	230672494	230672494	G	A	SNP	TRIP12	ENST00000283943	human	ensembl	74_37	-1	known	missense	c.2282	p.A761V	1.000	superfamily_ARM-type_fold,pfscan_WWE-dom	pfam_HECT,superfamily_HECT,superfamily_ARM-type_fold,smart_HECT,pfscan_HECT,pfscan_WWE-dom	-	no_errors	TRIP12	HGNC	ENSG00000153827				49	0	0	45	8	15.0943
SLC16A14	0	genome.wustl.edu	37	2	230910799	230910799	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	230910799	230910799	T	C	SNP	SLC16A14	ENST00000295190	human	ensembl	74_37	-1	known	missense	c.1043	p.E348G	0.658	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A14	HGNC	ENSG00000163053				68	0	0	43	19	30.6452
SP110	0	genome.wustl.edu	37	2	231033861	231033861	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	231033861	231033861	G	A	SNP	SP110	ENST00000258381	human	ensembl	74_37	-1	known	silent	c.2121	p.G707	0.000	NULL	pfam_Sp100,pfam_SAND_dom,superfamily_SAND_dom-like,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_SAND_dom,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_SAND_dom	-	no_errors	SP110	HGNC	ENSG00000135899				308	0	0	245	77	23.913
SP110	0	genome.wustl.edu	37	2	231037655	231037655	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	231037655	231037655	G	A	SNP	SP110	ENST00000258381	human	ensembl	74_37	-1	known	silent	c.1611	p.C537	0.866	superfamily_SAND_dom-like,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	pfam_Sp100,pfam_SAND_dom,superfamily_SAND_dom-like,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_SAND_dom,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_SAND_dom	-	no_errors	SP110	HGNC	ENSG00000135899				68	0	0	38	22	36.6667
SP140L	0	genome.wustl.edu	37	2	231264898	231264898	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	231264898	231264898	C	T	SNP	SP140L	ENST00000415673	human	ensembl	74_37	+1	known	silent	c.1254	p.C418	0.222	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	pfam_Sp100,pfam_SAND_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_SAND_dom-like,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_SAND_dom,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_SAND_dom,pfscan_Bromodomain	-	no_errors	SP140L	HGNC	ENSG00000185404				76	0	0	56	6	9.67742
ITM2C	0	genome.wustl.edu	37	2	231740379	231740379	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	231740379	231740379	C	T	SNP	ITM2C	ENST00000326427	human	ensembl	74_37	+1	known	silent	c.306	p.D102	1.000	NULL	pfam_BRICHOS_dom,pfscan_BRICHOS_dom	-	no_errors	ITM2C	HGNC	ENSG00000135916				145	0	0	93	25	21.1864
B3GNT7	0	genome.wustl.edu	37	2	232263297	232263297	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	232263297	232263297	C	T	SNP	B3GNT7	ENST00000287590	human	ensembl	74_37	+1	known	silent	c.867	p.Y289	0.999	pfam_Glyco_trans_31,pfam_Fringe-like	pfam_Glyco_trans_31,pfam_Fringe-like	-	no_errors	B3GNT7	HGNC	ENSG00000156966				14	0	0	6	4	40
NCL	0	genome.wustl.edu	37	2	232324987	232324987	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	232324987	232324987	C	T	SNP	NCL	ENST00000322723	human	ensembl	74_37	-1	known	missense	c.916	p.A306T	0.106	NULL	pfam_RRM_dom,smart_RRM_dom,smart_RRM_dom_euk,pfscan_RRM_dom	-	no_errors	NCL	HGNC	ENSG00000115053				121	0	0	104	30	22.3881
NCL	0	genome.wustl.edu	37	2	232325210	232325210	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	232325210	232325210	C	T	SNP	NCL	ENST00000322723	human	ensembl	74_37	-1	known	missense	c.877	p.A293T	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,smart_RRM_dom_euk,pfscan_RRM_dom	-	no_errors	NCL	HGNC	ENSG00000115053				142	0	0	157	10	5.98802
NCL	0	genome.wustl.edu	37	2	232327993	232327993	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	232327993	232327993	G	T	SNP	NCL	ENST00000322723	human	ensembl	74_37	-1	known	missense	c.53	p.A18D	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,smart_RRM_dom_euk,pfscan_RRM_dom	-	no_errors	NCL	HGNC	ENSG00000115053				146	1	0.680272	140	9	6.04027
NMUR1	0	genome.wustl.edu	37	2	232393472	232393472	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	232393472	232393472	C	T	SNP	NMUR1	ENST00000305141	human	ensembl	74_37	-1	known	missense	c.260	p.R87H	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_NeuromedU_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_NeuromedU_rcpt_1,prints_NeuromedU_rcpt,prints_GPCR_Rhodpsn	-	no_errors	NMUR1	HGNC	ENSG00000171596				59	0	0	42	10	19.2308
DIS3L2	0	genome.wustl.edu	37	2	233128133	233128133	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	233128133	233128133	G	A	SNP	DIS3L2	ENST00000325385	human	ensembl	74_37	+1	known	missense	c.1642	p.A548T	0.997	NULL	NULL	-	no_errors	DIS3L2	HGNC	ENSG00000144535				65	0	0	27	10	27.027
ALPP	0	genome.wustl.edu	37	2	233245418	233245418	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	233245418	233245418	C	T	SNP	ALPP	ENST00000392027	human	ensembl	74_37	+1	known	silent	c.951	p.A317	0.891	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase,prints_Alkaline_phosphatase	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase,prints_Alkaline_phosphatase	-	no_errors	ALPP	HGNC	ENSG00000163283				64	0	0	55	11	16.6667
ALPPL2	0	genome.wustl.edu	37	2	233272672	233272672	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	233272672	233272672	G	A	SNP	ALPPL2	ENST00000295453	human	ensembl	74_37	+1	known	missense	c.593	p.R198H	0.000	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase,prints_Alkaline_phosphatase	-	no_errors	ALPPL2	HGNC	ENSG00000163286				63	0	0	43	8	15.6863
ALPPL2	0	genome.wustl.edu	37	2	233274433	233274433	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	233274433	233274433	G	A	SNP	ALPPL2	ENST00000295453	human	ensembl	74_37	+1	known	missense	c.1450	p.A484T	0.938	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase,prints_Alkaline_phosphatase	-	no_errors	ALPPL2	HGNC	ENSG00000163286				12	0	0	3	3	50
GIGYF2	0	genome.wustl.edu	37	2	233655446	233655446	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	233655446	233655446	C	T	SNP	GIGYF2	ENST00000373566	human	ensembl	74_37	+1	known	nonsense	c.817	p.R273*	1.000	NULL	pfam_GYF,superfamily_GYF,smart_GYF,pfscan_GYF	-	no_errors	GIGYF2	HGNC	ENSG00000204120				220	0	0	129	36	21.8182
INPP5D	0	genome.wustl.edu	37	2	234072453	234072453	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	234072453	234072453	C	T	SNP	INPP5D	ENST00000359570	human	ensembl	74_37	+1	known	silent	c.1305	p.Y435	0.873	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	pfam_Endo/exonuclease/phosphatase,pfam_SH2,superfamily_Endo/exonuclease/phosphatase,smart_SH2,smart_IPPc,pfscan_SH2,prints_SH2	-	no_errors	INPP5D	HGNC	ENSG00000168918				85	0	0	65	25	27.7778
INPP5D	0	genome.wustl.edu	37	2	234102498	234102498	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	234102498	234102498	G	A	SNP	INPP5D	ENST00000359570	human	ensembl	74_37	+1	known	silent	c.2451	p.T817	0.000	NULL	pfam_Endo/exonuclease/phosphatase,pfam_SH2,superfamily_Endo/exonuclease/phosphatase,smart_SH2,smart_IPPc,pfscan_SH2,prints_SH2	-	no_errors	INPP5D	HGNC	ENSG00000168918				121	0	0	79	22	21.7822
ATG16L1	0	genome.wustl.edu	37	2	234202917	234202917	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	234202917	234202917	C	T	SNP	ATG16L1	ENST00000392017	human	ensembl	74_37	+1	known	missense	c.1745	p.A582V	0.998	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Autophagy-rel_prot_16,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Prefoldin,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	ATG16L1	HGNC	ENSG00000085978				44	0	0	21	8	27.5862
TRPM8	0	genome.wustl.edu	37	2	234851360	234851360	+	Silent	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	234851360	234851360	C	A	SNP	TRPM8	ENST00000324695	human	ensembl	74_37	+1	known	silent	c.667	p.R223	0.998	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM8	HGNC	ENSG00000144481				95	0	0	98	12	10.9091
TRPM8	0	genome.wustl.edu	37	2	234869622	234869622	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	234869622	234869622	C	T	SNP	TRPM8	ENST00000324695	human	ensembl	74_37	+1	known	missense	c.1565	p.T522M	0.994	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM8	HGNC	ENSG00000144481				87	0	0	70	5	6.66667
SH3BP4	0	genome.wustl.edu	37	2	235943670	235943670	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	235943670	235943670	G	A	SNP	SH3BP4	ENST00000344528	human	ensembl	74_37	+1	known	silent	c.24	p.A8	0.135	NULL	pfam_SH3_2,pfam_SH3_domain,pfam_ZU5,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	SH3BP4	HGNC	ENSG00000130147				40	0	0	27	4	12.9032
SH3BP4	0	genome.wustl.edu	37	2	235950141	235950141	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	235950141	235950141	G	A	SNP	SH3BP4	ENST00000344528	human	ensembl	74_37	+1	known	missense	c.728	p.R243H	1.000	NULL	pfam_SH3_2,pfam_SH3_domain,pfam_ZU5,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	SH3BP4	HGNC	ENSG00000130147				170	0	0	134	13	8.84354
AGAP1	0	genome.wustl.edu	37	2	236653360	236653360	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	236653360	236653360	G	A	SNP	AGAP1	ENST00000304032	human	ensembl	74_37	+1	known	missense	c.415	p.A139T	1.000	pfam_MIRO-like,pfam_Small_GTPase,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type	pfam_ArfGAP,pfam_MIRO-like,pfam_Small_GTPase,pfam_Ankyrin_rpt,pfam_Pleckstrin_homology,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP,prints_Small_GTPase	-	no_errors	AGAP1	HGNC	ENSG00000157985				105	0	0	76	17	18.2796
LOC101927958	0	genome.wustl.edu	37	2	239140913	239140913	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	239140913	239140913	C	T	SNP	LOC101927958	ENST00000456601	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	AC096574.4	Clone_based_vega_gene	ENSG00000225057				103	0	0	62	24	27.907
ATAD2B	0	genome.wustl.edu	37	2	24033274	24033274	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	24033274	24033274	T	C	SNP	ATAD2B	ENST00000238789	human	ensembl	74_37	-1	known	missense	c.2366	p.H789R	1.000	superfamily_P-loop_NTPase	pfam_ATPase_AAA_core,pfam_Bromodomain,pfam_IstB_ATP-bd,superfamily_P-loop_NTPase,superfamily_Bromodomain,smart_AAA+_ATPase,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	ATAD2B	HGNC	ENSG00000119778				83	0	0	67	24	26.3736
OR6B2	0	genome.wustl.edu	37	2	240969447	240969447	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	240969447	240969447	C	T	SNP	OR6B2	ENST00000402971	human	ensembl	74_37	-1	known	missense	c.400	p.V134I	0.820	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6B2	HGNC	ENSG00000182083				9	0	0	7	5	41.6667
PRR21	0	genome.wustl.edu	37	2	240981392	240981392	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	240981392	240981392	G	A	SNP	PRR21	ENST00000408934	human	ensembl	74_37	-1	known	silent	c.1008	p.I336	0.037	NULL	NULL	-	no_errors	PRR21	HGNC	ENSG00000221961				116	0	0	108	7	6.08696
RNPEPL1	0	genome.wustl.edu	37	2	241512589	241512589	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	241512589	241512589	C	T	SNP	RNPEPL1	ENST00000270357	human	ensembl	74_37	+1	known	silent	c.39	p.G13	0.981	pfam_Peptidase_M1_N	pfam_Peptidase_M1_C,pfam_Peptidase_M1_N,superfamily_ARM-type_fold,prints_Peptidase_M1_N	-	no_errors	RNPEPL1	HGNC	ENSG00000142327				12	0	0	8	5	38.4615
RNPEPL1	0	genome.wustl.edu	37	2	241516387	241516387	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	241516387	241516387	C	T	SNP	RNPEPL1	ENST00000270357	human	ensembl	74_37	+1	known	missense	c.1171	p.R391W	1.000	pfam_Peptidase_M1_C,superfamily_ARM-type_fold	pfam_Peptidase_M1_C,pfam_Peptidase_M1_N,superfamily_ARM-type_fold,prints_Peptidase_M1_N	-	no_errors	RNPEPL1	HGNC	ENSG00000142327				34	0	0	26	12	31.5789
CAPN10	0	genome.wustl.edu	37	2	241535745	241535745	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	241535745	241535745	C	T	SNP	CAPN10	ENST00000391984	human	ensembl	74_37	+1	known	missense	c.1288	p.R430W	1.000	pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Calpain_III	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN10	HGNC	ENSG00000142330				46	0	0	29	18	38.2979
CAPN10	0	genome.wustl.edu	37	2	241537370	241537370	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	241537370	241537370	C	T	SNP	CAPN10	ENST00000391984	human	ensembl	74_37	+1	known	silent	c.1809	p.C603	0.405	pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Calpain_III	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN10	HGNC	ENSG00000142330				13	0	0	9	4	30.7692
GPR35	0	genome.wustl.edu	37	2	241569890	241569890	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	241569890	241569890	C	T	SNP	GPR35	ENST00000438013	human	ensembl	74_37	+1	known	missense	c.614	p.A205V	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR35	HGNC	ENSG00000178623				62	0	0	32	11	25.5814
PASK	0	genome.wustl.edu	37	2	242051680	242051680	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	242051680	242051680	C	T	SNP	PASK	ENST00000358649	human	ensembl	74_37	-1	known	missense	c.3529	p.A1177T	0.993	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAS_fold,superfamily_Kinase-like_dom,superfamily_PAS,smart_PAS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAS,pfscan_Prot_kinase_dom,tigrfam_PAS	-	no_errors	PASK	HGNC	ENSG00000115687				60	0	0	42	8	16
PASK	0	genome.wustl.edu	37	2	242075305	242075305	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	242075305	242075305	G	A	SNP	PASK	ENST00000358649	human	ensembl	74_37	-1	known	silent	c.1287	p.D429	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAS_fold,superfamily_Kinase-like_dom,superfamily_PAS,smart_PAS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAS,pfscan_Prot_kinase_dom,tigrfam_PAS	-	no_errors	PASK	HGNC	ENSG00000115687				88	0	0	59	6	9.23077
FARP2	0	genome.wustl.edu	37	2	242375909	242375909	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	242375909	242375909	A	G	SNP	FARP2	ENST00000264042	human	ensembl	74_37	+1	known	missense	c.1114	p.T372A	0.754	pfam_FERM-adjacent	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM_central,pfam_FERM-adjacent,superfamily_DH-domain,superfamily_FERM_central,smart_Band_41_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_FERM_domain,pfscan_Pleckstrin_homology,pfscan_DH-domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	FARP2	HGNC	ENSG00000006607				104	0	0	105	8	7.07965
CXXC11	0	genome.wustl.edu	37	2	242814783	242814783	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	242814783	242814783	G	A	SNP	CXXC11	ENST00000343216	human	ensembl	74_37	+1	known	missense	c.1076	p.G359D	0.000	NULL	NULL	-	no_errors	CXXC11	HGNC	ENSG00000188011				39	0	0	19	9	32.1429
ITSN2	0	genome.wustl.edu	37	2	24484596	24484596	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	24484596	24484596	C	T	SNP	ITSN2	ENST00000355123	human	ensembl	74_37	-1	known	missense	c.2371	p.V791I	0.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,pfam_C2_dom,superfamily_DH-domain,superfamily_C2_dom,superfamily_SH3_domain,smart_EPS15_homology,smart_EF_hand_dom,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_dom,pfscan_EF_hand_dom,pfscan_EPS15_homology,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain,prints_p67phox	-	no_errors	ITSN2	HGNC	ENSG00000198399				41	0	0	36	12	25
POMC	0	genome.wustl.edu	37	2	25383970	25383970	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	25383970	25383970	C	T	SNP	POMC	ENST00000264708	human	ensembl	74_37	-1	known	missense	c.784	p.A262T	1.000	pfam_Opioid_neuropept	pfam_Mcrtin_ACTH_cent,pfam_Melanocortin_N,pfam_Opioid_neuropept,prints_Mcortin_ACTH	-	no_errors	POMC	HGNC	ENSG00000115138				44	0	0	28	4	12.5
POMC	0	genome.wustl.edu	37	2	25384011	25384011	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	25384011	25384011	G	A	SNP	POMC	ENST00000264708	human	ensembl	74_37	-1	known	missense	c.743	p.T248M	0.997	pfam_Opioid_neuropept	pfam_Mcrtin_ACTH_cent,pfam_Melanocortin_N,pfam_Opioid_neuropept,prints_Mcortin_ACTH	-	no_errors	POMC	HGNC	ENSG00000115138				33	0	0	21	7	25
HADHA	0	genome.wustl.edu	37	2	26414236	26414236	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	26414236	26414236	G	A	SNP	HADHA	ENST00000380649	human	ensembl	74_37	-1	known	silent	c.2175	p.G725	0.557	pfam_3HC_DH_C,superfamily_6-PGluconate_DH_C-like,tigrfam_Fa_ox_alpha_mit	pfam_Crotonase_core_superfam,pfam_3-OHacyl-CoA_DH_NAD-bd,pfam_3HC_DH_C,superfamily_6-PGluconate_DH_C-like,tigrfam_Fa_ox_alpha_mit	-	no_errors	HADHA	HGNC	ENSG00000084754				66	0	0	57	18	24
HADHA	0	genome.wustl.edu	37	2	26437359	26437359	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	26437359	26437359	G	A	SNP	HADHA	ENST00000380649	human	ensembl	74_37	-1	known	nonsense	c.871	p.R291*	0.976	tigrfam_Fa_ox_alpha_mit	pfam_Crotonase_core_superfam,pfam_3-OHacyl-CoA_DH_NAD-bd,pfam_3HC_DH_C,superfamily_6-PGluconate_DH_C-like,tigrfam_Fa_ox_alpha_mit	-	no_errors	HADHA	HGNC	ENSG00000084754				124	1	0.8	57	20	25.974
OTOF	0	genome.wustl.edu	37	2	26781400	26781400	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	26781400	26781400	G	A	SNP	OTOF	ENST00000272371	human	ensembl	74_37	-1	known	missense	c.40	p.R14W	1.000	superfamily_C2_dom,smart_C2_dom	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	OTOF	HGNC	ENSG00000115155				53	0	0	27	10	27.027
DPYSL5	0	genome.wustl.edu	37	2	27121505	27121505	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	27121505	27121505	C	T	SNP	DPYSL5	ENST00000288699	human	ensembl	74_37	+1	known	silent	c.138	p.G46	0.227	superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	DPYSL5	HGNC	ENSG00000157851				56	0	0	60	17	22.0779
ACP1	0	genome.wustl.edu	37	2	272055	272055	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	272055	272055	G	A	SNP	ACP1	ENST00000272065	human	ensembl	74_37	+1	known	missense	c.136	p.A46T	1.000	pfam_Ptyr_pPase_SF,superfamily_Ptyr_pPase_SF,smart_Ptyr_pPase_SF	pfam_Ptyr_pPase_SF,superfamily_Ptyr_pPase_SF,smart_Ptyr_pPase_SF,prints_Tyr_Pase_low_mol_wt_mml,prints_Tyr_phospatase/Ars_reductase	-	no_errors	ACP1	HGNC	ENSG00000143727				54	0	0	40	18	31.0345
KHK	0	genome.wustl.edu	37	2	27322321	27322321	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	27322321	27322321	C	T	SNP	KHK	ENST00000260598	human	ensembl	74_37	+1	known	silent	c.687	p.G229	0.137	pfam_PfkB_dom	pfam_PfkB_dom	-	no_errors	KHK	HGNC	ENSG00000138030				35	0	0	40	4	9.09091
SLC5A6	0	genome.wustl.edu	37	2	27428236	27428236	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	27428236	27428236	C	T	SNP	SLC5A6	ENST00000310574	human	ensembl	74_37	-1	known	missense	c.716	p.G239D	1.000	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A6	HGNC	ENSG00000138074				41	0	0	32	6	15.7895
EIF2B4	0	genome.wustl.edu	37	2	27590383	27590383	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	27590383	27590383	C	T	SNP	EIF2B4	ENST00000347454	human	ensembl	74_37	-1	known	missense	c.826	p.A276T	1.000	pfam_IF-2B-related	pfam_IF-2B-related	-	no_errors	EIF2B4	HGNC	ENSG00000115211				97	0	0	57	29	33.7209
PPP1CB	0	genome.wustl.edu	37	2	29016803	29016803	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	29016803	29016803	C	T	SNP	PPP1CB	ENST00000296122	human	ensembl	74_37	+1	known	silent	c.819	p.G273	0.998	smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	pfam_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP1CB	HGNC	ENSG00000213639				86	0	0	61	15	19.7368
FAM179A	0	genome.wustl.edu	37	2	29222106	29222106	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	29222106	29222106	C	T	SNP	FAM179A	ENST00000379558	human	ensembl	74_37	+1	known	missense	c.199	p.R67C	0.001	NULL	pfam_CLASP_N_dom,superfamily_ARM-type_fold	-	no_errors	FAM179A	HGNC	ENSG00000189350				34	0	0	32	4	11.1111
CLIP4	0	genome.wustl.edu	37	2	29404573	29404573	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	29404573	29404573	C	T	SNP	CLIP4	ENST00000320081	human	ensembl	74_37	+1	known	silent	c.1932	p.G644	1.000	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	pfam_CAP-Gly_domain,pfam_Ankyrin_rpt,superfamily_CAP-Gly_domain,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_CAP-Gly_domain	-	no_errors	CLIP4	HGNC	ENSG00000115295				88	0	0	68	8	10.5263
CAPN13	0	genome.wustl.edu	37	2	31010093	31010093	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	31010093	31010093	C	T	SNP	CAPN13	ENST00000295055	human	ensembl	74_37	-1	known	silent	c.99	p.R33	0.003	smart_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN13	HGNC	ENSG00000162949				23	0	0	18	2	10
XDH	0	genome.wustl.edu	37	2	31567583	31567583	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	31567583	31567583	T	C	SNP	XDH	ENST00000379416	human	ensembl	74_37	-1	known	missense	c.3371	p.D1124G	0.000	pfam_AldOxase/xan_DH_Mopterin-bd,superfamily_AldOxase/xan_DH_Mopterin-bd,pirsf_Ald_Oxase/xanthine_DH	pfam_AldOxase/xan_DH_Mopterin-bd,pfam_Mopterin_DH_FAD-bd,pfam_Ald_Oxase/Xan_DH_a/b,pfam_2Fe-2S-bd,pfam_CO_DH_flav_C,pfam_2Fe-2S_ferredoxin-type,superfamily_AldOxase/xan_DH_Mopterin-bd,superfamily_FAD-bd_2,superfamily_Ald_Oxase/Xan_DH_a/b,superfamily_2Fe-2S-bd,superfamily_CO_DH_flav_C,superfamily_2Fe-2S_ferredoxin-type,pirsf_Ald_Oxase/xanthine_DH,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Xanthine_DH_ssu	-	no_errors	XDH	HGNC	ENSG00000158125				60	0	0	37	19	33.9286
XDH	0	genome.wustl.edu	37	2	31610722	31610722	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	31610722	31610722	C	T	SNP	XDH	ENST00000379416	human	ensembl	74_37	-1	known	silent	c.606	p.T202	0.419	superfamily_FAD-bd_2,superfamily_2Fe-2S-bd,pirsf_Ald_Oxase/xanthine_DH,tigrfam_Xanthine_DH_ssu	pfam_AldOxase/xan_DH_Mopterin-bd,pfam_Mopterin_DH_FAD-bd,pfam_Ald_Oxase/Xan_DH_a/b,pfam_2Fe-2S-bd,pfam_CO_DH_flav_C,pfam_2Fe-2S_ferredoxin-type,superfamily_AldOxase/xan_DH_Mopterin-bd,superfamily_FAD-bd_2,superfamily_Ald_Oxase/Xan_DH_a/b,superfamily_2Fe-2S-bd,superfamily_CO_DH_flav_C,superfamily_2Fe-2S_ferredoxin-type,pirsf_Ald_Oxase/xanthine_DH,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Xanthine_DH_ssu	-	no_errors	XDH	HGNC	ENSG00000158125				12	0	0	5	3	37.5
TSSC1	0	genome.wustl.edu	37	2	3197897	3197897	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	3197897	3197897	G	A	SNP	TSSC1	ENST00000382125	human	ensembl	74_37	-1	known	missense	c.694	p.R232W	0.998	pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TSSC1	HGNC	ENSG00000032389				116	0	0	90	6	6.25
BIRC6	0	genome.wustl.edu	37	2	32678971	32678971	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	32678971	32678971	T	C	SNP	BIRC6	ENST00000421745	human	ensembl	74_37	+1	known	missense	c.4714	p.S1572P	1.000	NULL	pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2	-	no_errors	BIRC6	HGNC	ENSG00000115760				168	0	0	114	40	25.974
BIRC6	0	genome.wustl.edu	37	2	32750576	32750576	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	32750576	32750576	G	A	SNP	BIRC6	ENST00000421745	human	ensembl	74_37	+1	known	missense	c.11801	p.R3934H	1.000	NULL	pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2	-	no_errors	BIRC6	HGNC	ENSG00000115760				61	0	0	52	19	26.7606
BIRC6	0	genome.wustl.edu	37	2	32756560	32756560	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	32756560	32756560	G	A	SNP	BIRC6	ENST00000421745	human	ensembl	74_37	+1	known	missense	c.12233	p.G4078D	1.000	NULL	pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2	-	no_errors	BIRC6	HGNC	ENSG00000115760				45	0	0	47	7	12.963
TTC27	0	genome.wustl.edu	37	2	32958941	32958941	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	32958941	32958941	G	A	SNP	TTC27	ENST00000317907	human	ensembl	74_37	+1	known	missense	c.1280	p.R427H	1.000	NULL	pfam_TPR_2,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC27	HGNC	ENSG00000018699				105	0	0	90	26	22.4138
MYADML	0	genome.wustl.edu	37	2	33952147	33952147	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	33952147	33952147	G	A	SNP	MYADML	ENST00000474610	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	MYADML	HGNC	ENSG00000239649				16	0	0	9	6	40
TRAPPC12	0	genome.wustl.edu	37	2	3469366	3469366	+	Splice_Site	SNP	A	A	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	3469366	3469366	A	C	SNP	TRAPPC12	ENST00000324266	human	ensembl	74_37	+1	known	splice_site	c.1678-2	e8-2	0.996	-	-	-	no_errors	TRAPPC12	HGNC	ENSG00000171853				93	0	0	71	5	6.57895
CRIM1	0	genome.wustl.edu	37	2	36704131	36704131	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	36704131	36704131	C	T	SNP	CRIM1	ENST00000280527	human	ensembl	74_37	+1	known	missense	c.1091	p.A364V	1.000	pfam_VWF_C,smart_VWC_out,smart_VWF_C,pfscan_VWF_C	pfam_VWF_C,pfam_Antistasin-like,superfamily_Hirudin/antistatin,smart_IGFBP-like,smart_VWC_out,smart_VWF_C,pfscan_VWF_C	-	no_errors	CRIM1	HGNC	ENSG00000150938				120	0	0	92	9	8.91089
CRIM1	0	genome.wustl.edu	37	2	36739513	36739513	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	36739513	36739513	G	A	SNP	CRIM1	ENST00000280527	human	ensembl	74_37	+1	known	missense	c.1756	p.G586S	1.000	pfam_Antistasin-like,superfamily_Hirudin/antistatin	pfam_VWF_C,pfam_Antistasin-like,superfamily_Hirudin/antistatin,smart_IGFBP-like,smart_VWC_out,smart_VWF_C,pfscan_VWF_C	-	no_errors	CRIM1	HGNC	ENSG00000150938				154	0	0	76	33	30.2752
STRN	0	genome.wustl.edu	37	2	37085089	37085089	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	37085089	37085089	G	A	SNP	STRN	ENST00000263918	human	ensembl	74_37	-1	known	missense	c.1747	p.R583C	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Striatin_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	STRN	HGNC	ENSG00000115808				44	0	0	31	3	8.82353
QPCT	0	genome.wustl.edu	37	2	37594392	37594392	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	37594392	37594392	G	A	SNP	QPCT	ENST00000338415	human	ensembl	74_37	+1	known	silent	c.564	p.K188	0.107	pfam_Peptidase_M28	pfam_Peptidase_M28	-	no_errors	QPCT	HGNC	ENSG00000115828				122	0	0	98	39	28.4672
LRPPRC	0	genome.wustl.edu	37	2	44200831	44200831	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	44200831	44200831	C	T	SNP	LRPPRC	ENST00000260665	human	ensembl	74_37	-1	known	silent	c.1284	p.K428	0.940	NULL	pfam_Pentatricopeptide_repeat,tigrfam_Pentatricopeptide_repeat	-	no_errors	LRPPRC	HGNC	ENSG00000138095				138	0	0	142	9	5.96026
PPM1B	0	genome.wustl.edu	37	2	44428873	44428873	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	44428873	44428873	C	T	SNP	PPM1B	ENST00000282412	human	ensembl	74_37	+1	known	nonsense	c.535	p.R179*	1.000	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	pfam_PP2C-like_dom,pfam_PP2C_C,superfamily_PP2C-like_dom,superfamily_PP2C_C,smart_PP2C-like_dom	-	no_errors	PPM1B	HGNC	ENSG00000138032				128	0	0	73	29	28.4314
STON1-GTF2A1L	0	genome.wustl.edu	37	2	48809431	48809431	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	48809431	48809431	G	A	SNP	STON1-GTF2A1L	ENST00000309827	human	ensembl	74_37	+1	known	silent	c.1659	p.A553	0.001	pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pfscan_Clathrin_mu_C	pfam_TFIIA_asu/bsu,pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,superfamily_TFIIA_b-brl,superfamily_TFIIA_a-hlx,pfscan_Clathrin_mu_C,pfscan_SHD	-	no_errors	STON1-GTF2A1L	HGNC	ENSG00000068781				110	0	0	72	30	29.4118
STON1-GTF2A1L	0	genome.wustl.edu	37	2	48873848	48873848	+	Silent	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	48873848	48873848	T	C	SNP	STON1-GTF2A1L	ENST00000309827	human	ensembl	74_37	+1	known	silent	c.2757	p.S919	0.000	pfam_TFIIA_asu/bsu	pfam_TFIIA_asu/bsu,pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,superfamily_TFIIA_b-brl,superfamily_TFIIA_a-hlx,pfscan_Clathrin_mu_C,pfscan_SHD	-	no_errors	STON1-GTF2A1L	HGNC	ENSG00000068781				78	0	0	72	27	27.2727
FSHR	0	genome.wustl.edu	37	2	49189950	49189950	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	49189950	49189950	G	A	SNP	FSHR	ENST00000406846	human	ensembl	74_37	-1	known	silent	c.2010	p.G670	1.000	prints_FSH_rcpt	pfam_GPCR_Rhodpsn,pfam_GnHR_TM,pfam_LRR-contain_N,pfam_Leu-rich_rpt,smart_LRR-contain_N,pfscan_GPCR_Rhodpsn_7TM,prints_FSH_rcpt,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn,prints_TSH_rcpt	-	no_errors	FSHR	HGNC	ENSG00000170820				76	0	0	79	6	7.05882
NRXN1	0	genome.wustl.edu	37	2	50463984	50463984	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	50463984	50463984	G	A	SNP	NRXN1	ENST00000402717	human	ensembl	74_37	-1	known	silent	c.3465	p.A1155	0.002	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN1	HGNC	ENSG00000179915				70	0	0	70	4	5.40541
NRXN1	0	genome.wustl.edu	37	2	50724782	50724782	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	50724782	50724782	C	T	SNP	NRXN1	ENST00000402717	human	ensembl	74_37	-1	known	silent	c.2544	p.R848	0.967	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN1	HGNC	ENSG00000179915				106	0	0	70	30	30
NRXN1	0	genome.wustl.edu	37	2	50779924	50779924	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	50779924	50779924	G	A	SNP	NRXN1	ENST00000402717	human	ensembl	74_37	-1	known	silent	c.1536	p.S512	0.997	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN1	HGNC	ENSG00000179915				120	0	0	83	37	30.8333
NRXN1	0	genome.wustl.edu	37	2	51254674	51254674	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	51254674	51254674	C	T	SNP	NRXN1	ENST00000402717	human	ensembl	74_37	-1	known	silent	c.738	p.S246	0.584	smart_EG-like_dom,pfscan_EG-like_dom	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN1	HGNC	ENSG00000179915				10	0	0	10	5	33.3333
NRXN1	0	genome.wustl.edu	37	2	51255287	51255287	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	51255287	51255287	C	T	SNP	NRXN1	ENST00000402717	human	ensembl	74_37	-1	known	missense	c.125	p.R42H	1.000	superfamily_ConA-like_lec_gl_sf,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN1	HGNC	ENSG00000179915				10	0	0	4	4	50
MTIF2	0	genome.wustl.edu	37	2	55490845	55490845	+	Silent	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	55490845	55490845	G	T	SNP	MTIF2	ENST00000263629	human	ensembl	74_37	-1	known	silent	c.150	p.A50	0.000	NULL	pfam_EF_GTP-bd_dom,pfam_TIF_IF2_dom3,pfam_Transl_elong_EFTu/EF1A_2,pfam_MIRO-like,pfam_GTP_binding_domain,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase,superfamily_TIF_IF2_dom3,superfamily_Transl_B-barrel,tigrfam_Small_GTP-bd_dom	-	no_errors	MTIF2	HGNC	ENSG00000085760				118	1	0.840336	87	13	13
EFEMP1	0	genome.wustl.edu	37	2	56098194	56098194	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	56098194	56098194	G	A	SNP	EFEMP1	ENST00000355426	human	ensembl	74_37	-1	known	silent	c.1065	p.G355	0.061	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	-	no_errors	EFEMP1	HGNC	ENSG00000115380				53	0	0	58	14	19.4444
FANCL	0	genome.wustl.edu	37	2	58459193	58459193	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	58459193	58459193	C	T	SNP	FANCL	ENST00000233741	human	ensembl	74_37	-1	known	missense	c.151	p.A51T	1.000	pfam_FancL_WD-rpt_cont_dom	pfam_FancL_WD-rpt_cont_dom	-	no_errors	FANCL	HGNC	ENSG00000115392				56	0	0	36	14	28
BCL11A	0	genome.wustl.edu	37	2	60679659	60679659	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	60679659	60679659	C	T	SNP	BCL11A	ENST00000489516	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	BCL11A	HGNC	ENSG00000119866				46	0	0	22	8	26.6667
PAPOLG	0	genome.wustl.edu	37	2	60997606	60997606	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	60997606	60997606	C	T	SNP	PAPOLG	ENST00000238714	human	ensembl	74_37	+1	known	missense	c.452	p.A151V	1.000	pfam_PolA_pol_cen_dom,pfam_Nucleotidyltransferase,pirsf_PolyA_polymerase	pfam_PolA_pol_cen_dom,pfam_PolA_pol_RNA-bd_dom,pfam_Nucleotidyltransferase,superfamily_NuclTrfase_I_C,pirsf_PolyA_polymerase	-	no_errors	PAPOLG	HGNC	ENSG00000115421				48	0	0	29	8	21.6216
PUS10	0	genome.wustl.edu	37	2	61192233	61192233	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	61192233	61192233	G	A	SNP	PUS10	ENST00000316752	human	ensembl	74_37	-1	known	missense	c.683	p.A228V	0.063	NULL	superfamily_PsdUridine_synth_cat_dom	-	no_errors	PUS10	HGNC	ENSG00000162927				108	0	0	68	36	34.6154
USP34	0	genome.wustl.edu	37	2	61415812	61415812	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	61415812	61415812	G	A	SNP	USP34	ENST00000398571	human	ensembl	74_37	-1	known	missense	c.10066	p.R3356C	1.000	NULL	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	-	no_errors	USP34	HGNC	ENSG00000115464				77	0	0	53	16	23.1884
USP34	0	genome.wustl.edu	37	2	61447484	61447484	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	61447484	61447484	G	A	SNP	USP34	ENST00000398571	human	ensembl	74_37	-1	known	missense	c.8008	p.R2670W	1.000	superfamily_ARM-type_fold	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	-	no_errors	USP34	HGNC	ENSG00000115464				367	0	0	341	26	7.08447
USP34	0	genome.wustl.edu	37	2	61575222	61575222	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	61575222	61575222	G	A	SNP	USP34	ENST00000398571	human	ensembl	74_37	-1	known	nonsense	c.2068	p.R690*	1.000	NULL	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	-	no_errors	USP34	HGNC	ENSG00000115464				143	0	0	99	44	30.7692
USP34	0	genome.wustl.edu	37	2	61597500	61597500	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	61597500	61597500	G	A	SNP	USP34	ENST00000398571	human	ensembl	74_37	-1	known	nonsense	c.1207	p.R403*	0.828	NULL	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	-	no_errors	USP34	HGNC	ENSG00000115464				168	0	0	121	35	22.4359
SPRED2	0	genome.wustl.edu	37	2	65540766	65540766	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	65540766	65540766	G	T	SNP	SPRED2	ENST00000356388	human	ensembl	74_37	-1	known	missense	c.1126	p.L376I	1.000	pfam_Sprouty	pfam_Sprouty,pfam_WH1/EVH1,smart_WH1/EVH1,pfscan_WH1/EVH1	-	no_errors	SPRED2	HGNC	ENSG00000198369				38	0	0	36	7	16.2791
PROKR1	0	genome.wustl.edu	37	2	68882118	68882118	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	68882118	68882118	G	A	SNP	PROKR1	ENST00000303786	human	ensembl	74_37	+1	known	missense	c.592	p.A198T	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	PROKR1	HGNC	ENSG00000169618				123	0	0	104	11	9.56522
ARHGAP25	0	genome.wustl.edu	37	2	68962211	68962211	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	68962211	68962211	G	A	SNP	ARHGAP25	ENST00000456116	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.669	-	-	-	no_errors	ARHGAP25	HGNC	ENSG00000163219				19	0	0	10	4	28.5714
ARHGAP25	0	genome.wustl.edu	37	2	68962276	68962276	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	68962276	68962276	C	T	SNP	ARHGAP25	ENST00000456116	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ARHGAP25	HGNC	ENSG00000163219				69	0	0	62	9	12.6761
AAK1	0	genome.wustl.edu	37	2	69870045	69870045	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	69870045	69870045	C	T	SNP	AAK1	ENST00000409085	human	ensembl	74_37	-1	known	missense	c.128	p.R43Q	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	AAK1	HGNC	ENSG00000115977				45	0	0	35	9	20.4545
TGFA	0	genome.wustl.edu	37	2	70692857	70692857	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	70692857	70692857	C	T	SNP	TGFA	ENST00000295400	human	ensembl	74_37	-1	known	missense	c.106	p.V36M	0.115	NULL	pfscan_EG-like_dom	-	no_errors	TGFA	HGNC	ENSG00000163235				35	0	0	15	8	34.7826
ADD2	0	genome.wustl.edu	37	2	70933382	70933382	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	70933382	70933382	G	A	SNP	ADD2	ENST00000264436	human	ensembl	74_37	-1	known	silent	c.159	p.R53	0.646	NULL	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	-	no_errors	ADD2	HGNC	ENSG00000075340				38	0	0	19	8	29.6296
ADD2	0	genome.wustl.edu	37	2	70933547	70933547	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	70933547	70933547	G	A	SNP	ADD2	ENST00000430656	human	ensembl	74_37	-1	known	silent	c.42	p.T14	0.081	NULL	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	-	no_errors	ADD2	HGNC	ENSG00000075340				32	0	0	23	6	20.6897
CLEC4F	0	genome.wustl.edu	37	2	71036887	71036887	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	71036887	71036887	C	T	SNP	CLEC4F	ENST00000272367	human	ensembl	74_37	-1	known	missense	c.1642	p.A548T	0.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_Prefoldin,smart_C-type_lectin,prints_AntifreezeII,pfscan_C-type_lectin	-	no_errors	CLEC4F	HGNC	ENSG00000152672				88	0	0	57	18	24
ZNF638	0	genome.wustl.edu	37	2	71627611	71627611	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	71627611	71627611	C	T	SNP	ZNF638	ENST00000264447	human	ensembl	74_37	+1	known	missense	c.2660	p.A887V	1.000	NULL	pfam_RRM_dom,smart_Znf_U1,smart_Znf_C2H2-like,smart_RRM_dom,pfscan_Znf_C2H2_matrin,pfscan_RRM_dom	-	no_errors	ZNF638	HGNC	ENSG00000075292				60	0	0	50	4	7.40741
CCT7	0	genome.wustl.edu	37	2	73478490	73478490	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	73478490	73478490	G	A	SNP	CCT7	ENST00000258091	human	ensembl	74_37	+1	known	missense	c.1340	p.R447H	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,tigrfam_Chap_CCT_eta	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_eta	-	no_errors	CCT7	HGNC	ENSG00000135624				127	0	0	118	8	6.34921
EGR4	0	genome.wustl.edu	37	2	73518781	73518781	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	73518781	73518781	C	A	SNP	EGR4	ENST00000545030	human	ensembl	74_37	-1	known	missense	c.1574	p.S525I	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	EGR4	HGNC	ENSG00000135625				33	0	0	24	9	27.2727
EGR4	0	genome.wustl.edu	37	2	73519457	73519457	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	73519457	73519457	C	T	SNP	EGR4	ENST00000545030	human	ensembl	74_37	-1	known	missense	c.898	p.A300T	0.995	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	EGR4	HGNC	ENSG00000135625				10	0	0	8	6	42.8571
ALMS1	0	genome.wustl.edu	37	2	73717261	73717261	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	73717261	73717261	C	T	SNP	ALMS1	ENST00000264448	human	ensembl	74_37	+1	known	silent	c.8172	p.C2724	0.994	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127				176	0	0	106	35	24.8227
ACTG2	0	genome.wustl.edu	37	2	74136221	74136221	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	74136221	74136221	G	A	SNP	ACTG2	ENST00000345517	human	ensembl	74_37	+1	known	missense	c.406	p.A136T	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTG2	HGNC	ENSG00000163017				115	0	0	72	28	28
TET3	0	genome.wustl.edu	37	2	74317033	74317033	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	74317033	74317033	C	T	SNP	TET3	ENST00000409262	human	ensembl	74_37	+1	known	silent	c.2493	p.C831	0.993	NULL	NULL	-	no_errors	TET3	HGNC	ENSG00000187605				189	0	0	105	43	29.0541
MOGS	0	genome.wustl.edu	37	2	74688835	74688835	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	74688835	74688835	A	G	SNP	MOGS	ENST00000233616	human	ensembl	74_37	-1	known	missense	c.2081	p.L694P	1.000	pfam_Glycoside_hydrolase_63,superfamily_6-hairpin_glycosidase-like	pfam_Glycoside_hydrolase_63,superfamily_6-hairpin_glycosidase-like	-	no_errors	MOGS	HGNC	ENSG00000115275				84	0	0	37	17	31.4815
HK2	0	genome.wustl.edu	37	2	75116443	75116443	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	75116443	75116443	G	A	SNP	HK2	ENST00000290573	human	ensembl	74_37	+1	known	missense	c.2447	p.S816N	1.000	pfam_Hexokinase_C	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	HK2	HGNC	ENSG00000159399				35	0	0	25	8	24.2424
ENSG00000237077	0	genome.wustl.edu	37	2	78020056	78020056	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	78020056	78020056	G	A	SNP	ENSG00000237077	ENST00000422418	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.989	-	-	-	no_errors	AC105399.2	Clone_based_vega_gene	ENSG00000237077				42	0	0	33	15	31.25
LRRTM1	0	genome.wustl.edu	37	2	80530493	80530493	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	80530493	80530493	G	A	SNP	LRRTM1	ENST00000295057	human	ensembl	74_37	-1	known	missense	c.452	p.A151V	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM1	HGNC	ENSG00000162951				43	0	0	36	9	20
KCMF1	0	genome.wustl.edu	37	2	85276640	85276640	+	Silent	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	85276640	85276640	A	G	SNP	KCMF1	ENST00000409785	human	ensembl	74_37	+1	known	silent	c.753	p.A251	0.974	pfam_Di19_Zn_binding	pfam_Znf_ZZ,pfam_Di19_Zn_binding,smart_Znf_ZZ,smart_Znf_C2H2-like,pfscan_Znf_ZZ,pfscan_Znf_C2H2	-	no_errors	KCMF1	HGNC	ENSG00000176407				54	0	0	52	4	7.14286
RETSAT	0	genome.wustl.edu	37	2	85578103	85578103	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	85578103	85578103	G	A	SNP	RETSAT	ENST00000295802	human	ensembl	74_37	-1	known	missense	c.397	p.R133C	0.989	pfam_Amino_oxidase,pfam_FAD-dep_OxRdtase	pfam_Amino_oxidase,pfam_FAD_bind_dom,pfam_FAD-dep_OxRdtase,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_mOase_FAD-bd	-	no_errors	RETSAT	HGNC	ENSG00000042445				61	0	0	38	14	26.9231
KDM3A	0	genome.wustl.edu	37	2	86677062	86677062	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	86677062	86677062	C	T	SNP	KDM3A	ENST00000312912	human	ensembl	74_37	+1	known	nonsense	c.319	p.R107*	0.295	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM3A	HGNC	ENSG00000115548				149	0	0	127	12	8.63309
KDM3A	0	genome.wustl.edu	37	2	86705832	86705832	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	86705832	86705832	C	T	SNP	KDM3A	ENST00000312912	human	ensembl	74_37	+1	known	missense	c.2290	p.P764S	1.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM3A	HGNC	ENSG00000115548				139	0	0	94	16	14.5455
THNSL2	0	genome.wustl.edu	37	2	88474827	88474827	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	88474827	88474827	G	A	SNP	THNSL2	ENST00000324166	human	ensembl	74_37	+1	known	missense	c.478	p.D160N	1.000	pfam_Trp_syn_b_sub_like_PLP_eny_SF,superfamily_Trp_syn_b_sub_like_PLP_eny_SF,tigrfam_Thr_synthase_like	pfam_Trp_syn_b_sub_like_PLP_eny_SF,superfamily_Trp_syn_b_sub_like_PLP_eny_SF,tigrfam_Thr_synthase_like	-	no_errors	THNSL2	HGNC	ENSG00000144115				64	0	0	36	13	26.5306
KIDINS220	0	genome.wustl.edu	37	2	8871355	8871355	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	8871355	8871355	G	A	SNP	KIDINS220	ENST00000256707	human	ensembl	74_37	-1	known	missense	c.4811	p.A1604V	0.001	NULL	pfam_KAP_NTPase,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KIDINS220	HGNC	ENSG00000134313				34	0	0	31	14	31.1111
ASAP2	0	genome.wustl.edu	37	2	9437489	9437489	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	9437489	9437489	T	C	SNP	ASAP2	ENST00000281419	human	ensembl	74_37	+1	known	missense	c.260	p.V87A	1.000	NULL	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ASAP2	HGNC	ENSG00000151693				82	0	0	66	6	8.33333
ITGB1BP1	0	genome.wustl.edu	37	2	9548269	9548269	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	9548269	9548269	G	A	SNP	ITGB1BP1	ENST00000355346	human	ensembl	74_37	-1	known	silent	c.354	p.G118	0.100	pfam_Integrin-bd_ICAP-1,smart_PTB/PI_dom	pfam_Integrin-bd_ICAP-1,smart_PTB/PI_dom	-	no_errors	ITGB1BP1	HGNC	ENSG00000119185				64	0	0	55	10	15.3846
ANKRD20A8P	0	genome.wustl.edu	37	2	95488801	95488801	+	RNA	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	95488801	95488801	G	T	SNP	ANKRD20A8P	ENST00000432432	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.176	-	-	-	no_errors	ANKRD20A8P	HGNC	ENSG00000229089				145	1	0.684932	116	32	21.6216
CPSF3	0	genome.wustl.edu	37	2	9572738	9572738	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	9572738	9572738	C	T	SNP	CPSF3	ENST00000238112	human	ensembl	74_37	+1	known	missense	c.440	p.A147V	1.000	pfam_Beta-lactamas-like,smart_Beta-lactamas-like	pfam_CPSF73-100_C,pfam_Beta_Casp,pfam_Beta-lactamas-like,pfam_RMMBL,smart_Beta-lactamas-like	-	no_errors	CPSF3	HGNC	ENSG00000119203				55	0	0	47	4	7.84314
FAHD2A	0	genome.wustl.edu	37	2	96072853	96072853	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	96072853	96072853	C	T	SNP	FAHD2A	ENST00000233379	human	ensembl	74_37	+1	known	missense	c.410	p.A137V	0.998	pfam_Fumarylacetoacetase_C,superfamily_Fumarylacetoacetase_C-rel	pfam_Fumarylacetoacetase_C,superfamily_Fumarylacetoacetase_C-rel	-	no_errors	FAHD2A	HGNC	ENSG00000115042				93	0	0	74	19	20.4301
IAH1	0	genome.wustl.edu	37	2	9624576	9624576	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	9624576	9624576	G	A	SNP	IAH1	ENST00000497473	human	ensembl	74_37	+1	known	missense	c.461	p.R154H	0.996	pfam_Lipase_GDSL	pfam_Lipase_GDSL	-	no_errors	IAH1	HGNC	ENSG00000134330				120	0	0	75	19	20.2128
ADAM17	0	genome.wustl.edu	37	2	9634874	9634874	+	Silent	SNP	C	C	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	9634874	9634874	C	G	SNP	ADAM17	ENST00000310823	human	ensembl	74_37	-1	known	silent	c.1806	p.V602	1.000	NULL	pfam_Blood-coag_inhib_Disintegrin,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B	-	no_errors	ADAM17	HGNC	ENSG00000151694				73	0	0	76	4	5
ANKRD36C	0	genome.wustl.edu	37	2	96657298	96657298	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	96657298	96657298	G	A	SNP	ANKRD36C	ENST00000456556	human	ensembl	74_37	-1	known	silent	c.159	p.L53	0.002	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD36C	HGNC	ENSG00000174501				24	0	0	20	8	28.5714
STARD7	0	genome.wustl.edu	37	2	96858204	96858204	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	96858204	96858204	G	A	SNP	STARD7	ENST00000337288	human	ensembl	74_37	-1	known	missense	c.746	p.A249V	1.000	pfam_START_lipid-bd_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom	pfam_START_lipid-bd_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom	-	no_errors	STARD7	HGNC	ENSG00000084090				160	0	0	129	38	22.7545
ITPRIPL1	0	genome.wustl.edu	37	2	96992605	96992605	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	96992605	96992605	A	G	SNP	ITPRIPL1	ENST00000361124	human	ensembl	74_37	+1	known	missense	c.260	p.D87G	0.862	NULL	NULL	-	no_errors	ITPRIPL1	HGNC	ENSG00000198885				63	0	0	65	4	5.7971
NCAPH	0	genome.wustl.edu	37	2	97024926	97024926	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	97024926	97024926	G	A	SNP	NCAPH	ENST00000240423	human	ensembl	74_37	+1	known	missense	c.1352	p.R451H	0.964	pfam_Condensin_barren_su2,pirsf_Condensin_barren_su2	pfam_Condensin_barren_su2,pirsf_Condensin_barren_su2	-	no_errors	NCAPH	HGNC	ENSG00000121152				75	0	0	60	7	10.4478
YWHAQ	0	genome.wustl.edu	37	2	9728312	9728312	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	9728312	9728312	G	A	SNP	YWHAQ	ENST00000238081	human	ensembl	74_37	-1	known	silent	c.564	p.A188	1.000	pfam_14-3-3_domain,superfamily_14-3-3_domain,smart_14-3-3_domain,pirsf_14-3-3,prints_14-3-3	pfam_14-3-3_domain,superfamily_14-3-3_domain,smart_14-3-3_domain,pirsf_14-3-3,prints_14-3-3	-	no_errors	YWHAQ	HGNC	ENSG00000134308				85	0	0	55	18	24.6575
ANKRD36	0	genome.wustl.edu	37	2	97784178	97784178	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	97784178	97784178	A	G	SNP	ANKRD36	ENST00000420699	human	ensembl	74_37	+1	known	missense	c.410	p.Y137C	0.982	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD36	HGNC	ENSG00000135976				61	0	0	36	18	33.3333
TMEM131	0	genome.wustl.edu	37	2	98409946	98409946	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	98409946	98409946	G	A	SNP	TMEM131	ENST00000186436	human	ensembl	74_37	-1	known	missense	c.3457	p.R1153W	1.000	NULL	pfam_DUF3651_TMEM131	-	no_errors	TMEM131	HGNC	ENSG00000075568				50	0	0	48	14	22.5806
LIPT1	0	genome.wustl.edu	37	2	99778541	99778541	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	99778541	99778541	G	A	SNP	LIPT1	ENST00000340066	human	ensembl	74_37	+1	known	missense	c.121	p.V41I	0.999	tigrfam_LipoylTrfase_LipoateP_Ligase	pfam_BPL_LipA_LipB,tigrfam_LipoylTrfase_LipoateP_Ligase	-	no_errors	LIPT1	HGNC	ENSG00000144182				157	0	0	147	8	5.16129
EIF5B	0	genome.wustl.edu	37	2	99976770	99976770	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	99976770	99976770	A	T	SNP	EIF5B	ENST00000289371	human	ensembl	74_37	+1	known	missense	c.107	p.E36V	1.000	NULL	pfam_EF_GTP-bd_dom,pfam_TIF_IF2_dom3,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Transl_B-barrel,superfamily_TIF_IF2_dom3,prints_EF_GTP-bd_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	EIF5B	HGNC	ENSG00000158417				48	0	0	43	21	32.8125
EIF5B	0	genome.wustl.edu	37	2	99978220	99978220	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	99978220	99978220	A	T	SNP	EIF5B	ENST00000289371	human	ensembl	74_37	+1	known	missense	c.856	p.T286S	0.002	NULL	pfam_EF_GTP-bd_dom,pfam_TIF_IF2_dom3,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Transl_B-barrel,superfamily_TIF_IF2_dom3,prints_EF_GTP-bd_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	EIF5B	HGNC	ENSG00000158417				203	0	0	150	40	21.0526
ANKEF1	0	genome.wustl.edu	37	20	10036276	10036276	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	10036276	10036276	G	A	SNP	ANKEF1	ENST00000378380	human	ensembl	74_37	+1	known	missense	c.2299	p.A767T	0.967	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EF_hand_dom,prints_Ankyrin_rpt	-	no_errors	ANKEF1	HGNC	ENSG00000132623				98	0	0	128	22	14.6667
SLX4IP	0	genome.wustl.edu	37	20	10603861	10603861	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	10603861	10603861	C	T	SNP	SLX4IP	ENST00000334534	human	ensembl	74_37	+1	known	missense	c.1061	p.T354M	0.000	NULL	NULL	-	no_errors	SLX4IP	HGNC	ENSG00000149346				101	0	0	117	24	17.0213
JAG1	0	genome.wustl.edu	37	20	10620233	10620233	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	10620233	10620233	C	T	SNP	JAG1	ENST00000254958	human	ensembl	74_37	-1	known	silent	c.3570	p.P1190	0.965	NULL	pfam_EG-like_dom,pfam_Notch_ligand_N,pfam_DSL,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,smart_DSL,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_VWC_out,smart_VWF_C,pfscan_DSL,pfscan_EG-like_dom	-	no_errors	JAG1	HGNC	ENSG00000101384				159	0	0	210	19	8.29694
SNPH	0	genome.wustl.edu	37	20	1277814	1277814	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	1277814	1277814	C	T	SNP	SNPH	ENST00000381867	human	ensembl	74_37	+1	known	missense	c.208	p.R70W	1.000	NULL	NULL	-	no_errors	SNPH	HGNC	ENSG00000101298				26	0	0	24	8	25
TASP1	0	genome.wustl.edu	37	20	13370985	13370985	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	13370985	13370985	G	A	SNP	TASP1	ENST00000480436	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.192	-	-	-	no_errors	TASP1	HGNC	ENSG00000089123				24	0	0	14	5	26.3158
TASP1	0	genome.wustl.edu	37	20	13604122	13604122	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	13604122	13604122	C	T	SNP	TASP1	ENST00000337743	human	ensembl	74_37	-1	known	missense	c.253	p.A85T	1.000	pfam_Peptidase_T2	pfam_Peptidase_T2	-	no_errors	TASP1	HGNC	ENSG00000089123				39	0	0	34	10	22.7273
ESF1	0	genome.wustl.edu	37	20	13763615	13763615	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	13763615	13763615	G	A	SNP	ESF1	ENST00000202816	human	ensembl	74_37	-1	known	missense	c.172	p.R58C	0.995	NULL	pfam_NUC153	-	no_errors	ESF1	HGNC	ENSG00000089048				93	0	0	75	54	41.8605
SEL1L2	0	genome.wustl.edu	37	20	13839962	13839962	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	13839962	13839962	C	T	SNP	SEL1L2	ENST00000284951	human	ensembl	74_37	-1	known	silent	c.1764	p.A588	0.981	pfam_Sel1-like,smart_Sel1-like	pfam_Sel1-like,smart_Sel1-like	-	no_errors	SEL1L2	HGNC	ENSG00000101251				40	0	0	41	11	21.1538
SIRPB2	0	genome.wustl.edu	37	20	1459011	1459011	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	1459011	1459011	G	A	SNP	SIRPB2	ENST00000359801	human	ensembl	74_37	-1	known	silent	c.693	p.N231	0.000	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	SIRPB2	HGNC	ENSG00000196209				115	0	0	106	13	10.9244
MACROD2	0	genome.wustl.edu	37	20	14665514	14665514	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	14665514	14665514	C	T	SNP	MACROD2	ENST00000310348	human	ensembl	74_37	+1	known	silent	c.327	p.A109	0.908	pfam_Macro_dom,smart_Macro_dom,pfscan_Macro_dom	pfam_Macro_dom,smart_Macro_dom,pfscan_Macro_dom	-	no_errors	MACROD2	HGNC	ENSG00000172264				111	0	0	102	26	20.3125
SIRPB1	0	genome.wustl.edu	37	20	1558987	1558987	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	1558987	1558987	G	A	SNP	SIRPB1	ENST00000381605	human	ensembl	74_37	-1	known	missense	c.430	p.R144C	0.050	smart_Ig_sub	pfam_Ig_C1-set,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	SIRPB1	HGNC	ENSG00000101307				108	0	0	116	20	14.7059
MACROD2	0	genome.wustl.edu	37	20	16030511	16030511	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	16030511	16030511	G	A	SNP	MACROD2	ENST00000310348	human	ensembl	74_37	+1	known	missense	c.1337	p.G446E	0.048	NULL	pfam_Macro_dom,smart_Macro_dom,pfscan_Macro_dom	-	no_errors	MACROD2	HGNC	ENSG00000172264				68	0	0	85	6	6.59341
SIRPG	0	genome.wustl.edu	37	20	1616842	1616842	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	1616842	1616842	G	A	SNP	SIRPG	ENST00000303415	human	ensembl	74_37	-1	known	missense	c.740	p.A247V	0.006	NULL	pfam_Ig_C1-set,pfam_CD80_C2-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	SIRPG	HGNC	ENSG00000089012				34	0	0	64	9	12.3288
CSRP2BP	0	genome.wustl.edu	37	20	18163860	18163860	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	18163860	18163860	C	T	SNP	CSRP2BP	ENST00000435364	human	ensembl	74_37	+1	known	silent	c.1902	p.P634	0.026	NULL	pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	CSRP2BP	HGNC	ENSG00000149474				121	0	0	111	20	15.2672
ZNF133	0	genome.wustl.edu	37	20	18296267	18296267	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	18296267	18296267	G	A	SNP	ZNF133	ENST00000396026	human	ensembl	74_37	+1	known	missense	c.781	p.A261T	0.227	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF133	HGNC	ENSG00000125846				41	0	0	64	9	12.3288
SEC23B	0	genome.wustl.edu	37	20	18535003	18535003	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	18535003	18535003	G	A	SNP	SEC23B	ENST00000262544	human	ensembl	74_37	+1	known	missense	c.2117	p.R706H	0.947	pfam_Gelsolin_dom	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Gelsolin_dom,pfam_Znf_Sec23_Sec24,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC23B	HGNC	ENSG00000101310				105	0	0	138	36	20.6897
SLC24A3	0	genome.wustl.edu	37	20	19674014	19674014	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	19674014	19674014	C	T	SNP	SLC24A3	ENST00000328041	human	ensembl	74_37	+1	known	missense	c.1436	p.T479M	1.000	tigrfam_K/Na/Ca-exchanger	pfam_NaCa_Exmemb,tigrfam_K/Na/Ca-exchanger	-	no_errors	SLC24A3	HGNC	ENSG00000185052				86	0	0	81	19	19
C20orf26	0	genome.wustl.edu	37	20	20269550	20269550	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	20269550	20269550	A	G	SNP	C20orf26	ENST00000245957	human	ensembl	74_37	+1	known	missense	c.3094	p.I1032V	0.998	NULL	superfamily_Acyl_CoA_acyltransferase	-	no_errors	C20orf26	HGNC	ENSG00000089101				46	0	0	34	4	10.5263
RALGAPA2	0	genome.wustl.edu	37	20	20552181	20552181	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	20552181	20552181	C	T	SNP	RALGAPA2	ENST00000202677	human	ensembl	74_37	-1	known	missense	c.3077	p.R1026H	1.000	superfamily_ARM-type_fold	pfam_Rap_GAP_dom,superfamily_ARM-type_fold,pfscan_Rap_GAP_dom	-	no_errors	RALGAPA2	HGNC	ENSG00000188559				47	0	0	44	8	15.3846
STK35	0	genome.wustl.edu	37	20	2097969	2097969	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	2097969	2097969	G	A	SNP	STK35	ENST00000381482	human	ensembl	74_37	+1	known	missense	c.1550	p.R517Q	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	STK35	HGNC	ENSG00000125834				112	0	0	150	12	7.40741
XRN2	0	genome.wustl.edu	37	20	21311291	21311291	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	21311291	21311291	G	A	SNP	XRN2	ENST00000377191	human	ensembl	74_37	+1	known	missense	c.524	p.R175H	1.000	pfam_Put_53exo,pirsf_5_3_exoribonuclease_2	pfam_Put_53exo,superfamily_Znf_CCHC,pirsf_5_3_exoribonuclease_2	-	no_errors	XRN2	HGNC	ENSG00000088930				68	0	0	77	5	6.09756
FOXA2	0	genome.wustl.edu	37	20	22563405	22563405	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	22563405	22563405	G	A	SNP	FOXA2	ENST00000419308	human	ensembl	74_37	-1	known	missense	c.475	p.R159C	1.000	pfam_Fork-head_N	pfam_TF_fork_head,pfam_Fork-head_N,pfam_Forkhead_box_C,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXA2	HGNC	ENSG00000125798				78	0	0	67	5	6.94444
SSTR4	0	genome.wustl.edu	37	20	23016316	23016316	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	23016316	23016316	G	A	SNP	SSTR4	ENST00000255008	human	ensembl	74_37	+1	known	missense	c.196	p.A66T	0.999	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Somatstn_rcpt_4,prints_GPCR_Rhodpsn,prints_Somatstn_rcpt,prints_Opioid_rcpt,prints_Neuropept_B/W_rcpt,prints_NPY_rcpt,prints_Somatstn_rcpt_1	-	no_errors	SSTR4	HGNC	ENSG00000132671				72	0	0	58	17	22.6667
CD93	0	genome.wustl.edu	37	20	23065010	23065010	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	23065010	23065010	C	T	SNP	CD93	ENST00000246006	human	ensembl	74_37	-1	known	missense	c.1820	p.R607H	0.985	superfamily_MFS_dom_general_subst_transpt	pirsf_CD93/CD141,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_MFS_dom_general_subst_transpt,smart_C-type_lectin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_C-type_lectin	-	no_errors	CD93	HGNC	ENSG00000125810				100	0	0	123	20	13.986
TGM3	0	genome.wustl.edu	37	20	2312868	2312868	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	2312868	2312868	C	T	SNP	TGM3	ENST00000381458	human	ensembl	74_37	+1	known	silent	c.1554	p.N518	1.000	pfam_Transglutaminase_C,superfamily_Transglutaminase_C	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM3	HGNC	ENSG00000125780				37	0	0	46	5	9.80392
GZF1	0	genome.wustl.edu	37	20	23345592	23345592	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	23345592	23345592	G	A	SNP	GZF1	ENST00000338121	human	ensembl	74_37	+1	known	missense	c.572	p.G191D	0.012	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	GZF1	HGNC	ENSG00000125812				79	0	0	86	15	14.8515
GZF1	0	genome.wustl.edu	37	20	23346300	23346300	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	23346300	23346300	G	A	SNP	GZF1	ENST00000338121	human	ensembl	74_37	+1	known	missense	c.1280	p.R427H	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	GZF1	HGNC	ENSG00000125812				13	0	0	27	5	15.625
CST11	0	genome.wustl.edu	37	20	23432462	23432462	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	23432462	23432462	C	T	SNP	CST11	ENST00000377009	human	ensembl	74_37	-1	known	silent	c.324	p.E108	0.002	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	CST11	HGNC	ENSG00000125831				55	0	0	51	14	21.5385
SNRPB	0	genome.wustl.edu	37	20	2442418	2442418	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	2442418	2442418	C	T	SNP	SNRPB	ENST00000438552	human	ensembl	74_37	-1	known	missense	c.707	p.R236H	1.000	pirsf_snRNP-assoc_SmB/SmN	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc,pirsf_snRNP-assoc_SmB/SmN	-	no_errors	SNRPB	HGNC	ENSG00000125835				31	0	0	44	10	18.5185
SYNDIG1	0	genome.wustl.edu	37	20	24646036	24646036	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	24646036	24646036	C	T	SNP	SYNDIG1	ENST00000376862	human	ensembl	74_37	+1	known	missense	c.673	p.R225W	1.000	pfam_CD225/Dispanin_fam	pfam_CD225/Dispanin_fam	-	no_errors	SYNDIG1	HGNC	ENSG00000101463				106	0	0	107	8	6.95652
ENTPD6	0	genome.wustl.edu	37	20	25187856	25187856	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	25187856	25187856	G	A	SNP	ENTPD6	ENST00000376652	human	ensembl	74_37	+1	known	missense	c.199	p.A67T	0.236	NULL	pfam_GDA1_CD39_NTPase	-	no_errors	ENTPD6	HGNC	ENSG00000197586				29	0	0	32	8	20
ZNF337	0	genome.wustl.edu	37	20	25657197	25657197	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	25657197	25657197	G	A	SNP	ZNF337	ENST00000252979	human	ensembl	74_37	-1	known	nonsense	c.727	p.R243*	0.377	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF337	HGNC	ENSG00000130684				116	0	0	99	31	23.8462
C20orf96	0	genome.wustl.edu	37	20	257710	257710	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	257710	257710	T	G	SNP	C20orf96	ENST00000360321	human	ensembl	74_37	-1	known	missense	c.800	p.K267T	0.000	NULL	NULL	-	no_errors	C20orf96	HGNC	ENSG00000196476				264	0	0	270	15	5.26316
TMC2	0	genome.wustl.edu	37	20	2621828	2621828	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	2621828	2621828	C	T	SNP	TMC2	ENST00000358864	human	ensembl	74_37	+1	known	missense	c.2552	p.A851V	0.030	NULL	pfam_TMC	-	no_errors	TMC2	HGNC	ENSG00000149488				81	0	0	89	8	8.24742
CPXM1	0	genome.wustl.edu	37	20	2776949	2776949	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	2776949	2776949	G	A	SNP	CPXM1	ENST00000380605	human	ensembl	74_37	-1	known	missense	c.1186	p.R396C	1.000	pfam_Peptidase_M14	pfam_Peptidase_M14,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_CarboxyPept-like_regulatory,smart_Coagulation_fac_5/8-C_type_dom,smart_Peptidase_M14,pfscan_Coagulation_fac_5/8-C_type_dom,prints_Peptidase_M14	-	no_errors	CPXM1	HGNC	ENSG00000088882				50	0	0	50	6	10.7143
C20orf141	0	genome.wustl.edu	37	20	2796188	2796188	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	2796188	2796188	G	A	SNP	C20orf141	ENST00000380589	human	ensembl	74_37	+1	known	missense	c.265	p.A89T	0.000	NULL	NULL	-	no_errors	C20orf141	HGNC	ENSG00000258713				37	0	0	34	12	26.087
PCED1A	0	genome.wustl.edu	37	20	2818955	2818955	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	2818955	2818955	C	T	SNP	PCED1A	ENST00000360652	human	ensembl	74_37	-1	known	missense	c.764	p.R255H	1.000	NULL	NULL	-	no_errors	PCED1A	HGNC	ENSG00000132635				87	0	0	65	11	14.4737
VPS16	0	genome.wustl.edu	37	20	2844008	2844008	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	2844008	2844008	C	T	SNP	VPS16	ENST00000380445	human	ensembl	74_37	+1	known	silent	c.1440	p.G480	0.201	pirsf_VPS16	pfam_Vps16_N,pfam_Vps16_C,pirsf_VPS16	-	no_errors	VPS16	HGNC	ENSG00000215305				88	0	0	94	5	5.05051
PTPRA	0	genome.wustl.edu	37	20	2945651	2945651	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	2945651	2945651	C	T	SNP	PTPRA	ENST00000425918	human	ensembl	74_37	+1	known	missense	c.251	p.P84L	0.861	pirsf_Tyr_Pase_rcpt_a/e-type	pirsf_Tyr_Pase_rcpt_a/e-type,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRA	HGNC	ENSG00000132670				138	0	0	161	11	6.39535
HM13	0	genome.wustl.edu	37	20	30147438	30147438	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	30147438	30147438	G	A	SNP	HM13	ENST00000398174	human	ensembl	74_37	+1	known	missense	c.833	p.R278H	1.000	pfam_Peptidase_A22B_SPP,smart_Preselin/SPP	pfam_Peptidase_A22B_SPP,smart_Preselin/SPP	-	no_errors	HM13	HGNC	ENSG00000101294				420	0	0	456	91	16.6362
HM13	0	genome.wustl.edu	37	20	30153982	30153982	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	30153982	30153982	C	T	SNP	HM13	ENST00000487281	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.096	-	-	-	no_errors	HM13	HGNC	ENSG00000101294				31	0	0	30	6	16.6667
AVP	0	genome.wustl.edu	37	20	3065221	3065221	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	3065221	3065221	A	C	SNP	AVP	ENST00000380293	human	ensembl	74_37	-1	known	missense	c.100	p.S34A	0.000	superfamily_Neurhyp_horm,pirsf_Neurhyp_horm,prints_Neurhyp_horm	pfam_Neurhyp_horm,superfamily_Neurhyp_horm,smart_Neurhyp_horm,pirsf_Neurhyp_horm,prints_Neurhyp_horm	-	no_errors	AVP	HGNC	ENSG00000101200				118	1	0.840336	144	9	5.88235
TM9SF4	0	genome.wustl.edu	37	20	30745754	30745754	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	30745754	30745754	A	G	SNP	TM9SF4	ENST00000398022	human	ensembl	74_37	+1	known	missense	c.1487	p.Y496C	1.000	pfam_EMP70	pfam_EMP70	-	no_errors	TM9SF4	HGNC	ENSG00000101337				72	0	0	77	9	10.4651
POFUT1	0	genome.wustl.edu	37	20	30803242	30803242	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	30803242	30803242	G	A	SNP	POFUT1	ENST00000375749	human	ensembl	74_37	+1	known	silent	c.417	p.T139	0.256	pfam_GDP-Fuc_O-FucTrfase	pfam_GDP-Fuc_O-FucTrfase	-	no_errors	POFUT1	HGNC	ENSG00000101346				85	0	0	74	14	15.9091
C20orf112	0	genome.wustl.edu	37	20	31041289	31041289	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	31041289	31041289	G	A	SNP	C20orf112	ENST00000359676	human	ensembl	74_37	-1	known	missense	c.583	p.R195C	1.000	NULL	NULL	-	no_errors	C20orf112	HGNC	ENSG00000197183				88	0	0	62	13	17.3333
C20orf112	0	genome.wustl.edu	37	20	31044021	31044021	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	31044021	31044021	G	A	SNP	C20orf112	ENST00000359676	human	ensembl	74_37	-1	known	missense	c.287	p.P96L	0.958	NULL	NULL	-	no_errors	C20orf112	HGNC	ENSG00000197183				30	0	0	27	7	20.5882
FASTKD5	0	genome.wustl.edu	37	20	3128084	3128084	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	3128084	3128084	G	A	SNP	FASTKD5	ENST00000380266	human	ensembl	74_37	-1	known	silent	c.1633	p.L545	0.998	pfam_FAST_2	pfam_FAST_2,pfam_FAST_Leu-rich,pfam_RAP,smart_RAP	-	no_errors	FASTKD5	HGNC	ENSG00000215251				72	0	0	91	8	8.08081
DNMT3B	0	genome.wustl.edu	37	20	31383281	31383281	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	31383281	31383281	G	A	SNP	DNMT3B	ENST00000328111	human	ensembl	74_37	+1	known	missense	c.1193	p.R398H	1.000	NULL	pfam_PWWP_dom,pfam_C5_MeTfrase,superfamily_Znf_FYVE_PHD,smart_PWWP_dom,pfscan_PWWP_dom	-	no_errors	DNMT3B	HGNC	ENSG00000088305				73	0	0	83	11	11.7021
DNMT3B	0	genome.wustl.edu	37	20	31386409	31386409	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	31386409	31386409	G	A	SNP	DNMT3B	ENST00000328111	human	ensembl	74_37	+1	known	missense	c.1634	p.R545H	0.985	superfamily_Znf_FYVE_PHD	pfam_PWWP_dom,pfam_C5_MeTfrase,superfamily_Znf_FYVE_PHD,smart_PWWP_dom,pfscan_PWWP_dom	-	no_errors	DNMT3B	HGNC	ENSG00000088305				39	0	0	34	4	10.5263
BPIFB3	0	genome.wustl.edu	37	20	31657706	31657706	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	31657706	31657706	C	T	SNP	BPIFB3	ENST00000375494	human	ensembl	74_37	+1	known	missense	c.1162	p.R388C	0.713	pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_C	pfam_Lipid-bd_serum_glycop_N,pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,smart_Lipid-bd_serum_glycop_C	-	no_errors	BPIFB3	HGNC	ENSG00000186190				267	0	0	266	57	17.6471
BPIFB1	0	genome.wustl.edu	37	20	31890858	31890858	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	31890858	31890858	G	A	SNP	BPIFB1	ENST00000253354	human	ensembl	74_37	+1	known	missense	c.1118	p.R373H	0.025	pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,pirsf_PLUNC_long_form	pfam_Lipid-bd_serum_glycop_N,pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,pirsf_PLUNC_long_form	-	no_errors	BPIFB1	HGNC	ENSG00000125999				120	1	0.826446	115	13	10.1562
CDK5RAP1	0	genome.wustl.edu	37	20	31954730	31954730	+	Silent	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	31954730	31954730	G	T	SNP	CDK5RAP1	ENST00000357886	human	ensembl	74_37	-1	known	silent	c.1519	p.R507	0.998	tigrfam_MiaB_methiolase,tigrfam_Methylthiotransferase	pfam_rSAM,pfam_Methylthiotransferase_N,pfam_TRAM_dom,smart_Elp3/MiaB/NifB,pfscan_TRAM_dom,tigrfam_MiaB_methiolase,tigrfam_Methylthiotransferase	-	no_errors	CDK5RAP1	HGNC	ENSG00000101391				121	0	0	160	38	19.1919
SLC4A11	0	genome.wustl.edu	37	20	3210034	3210034	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	3210034	3210034	C	T	SNP	SLC4A11	ENST00000380059	human	ensembl	74_37	-1	known	missense	c.1936	p.A646T	1.000	pfam_HCO3_transpt_C,prints_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_PTS_EIIA_type-2_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk	-	no_errors	SLC4A11	HGNC	ENSG00000088836				38	0	0	51	5	8.92857
SLC4A11	0	genome.wustl.edu	37	20	3212106	3212106	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	3212106	3212106	C	T	SNP	SLC4A11	ENST00000380059	human	ensembl	74_37	-1	known	missense	c.947	p.R316H	1.000	pfam_PTS_EIIA_type-2_dom,superfamily_PTrfase/Anion_transptr	pfam_HCO3_transpt_C,pfam_PTS_EIIA_type-2_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk	-	no_errors	SLC4A11	HGNC	ENSG00000088836				78	0	0	94	6	6
SLC4A11	0	genome.wustl.edu	37	20	3214613	3214613	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	3214613	3214613	C	T	SNP	SLC4A11	ENST00000380059	human	ensembl	74_37	-1	known	missense	c.688	p.A230T	0.995	superfamily_PTrfase/Anion_transptr	pfam_HCO3_transpt_C,pfam_PTS_EIIA_type-2_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk	-	no_errors	SLC4A11	HGNC	ENSG00000088836				72	0	0	102	9	8.10811
CBFA2T2	0	genome.wustl.edu	37	20	32199012	32199012	+	Silent	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	32199012	32199012	A	G	SNP	CBFA2T2	ENST00000346541	human	ensembl	74_37	+1	known	silent	c.318	p.Q106	0.994	NULL	pfam_NHR2,pfam_TAFH_NHR1,pfam_Znf_MYND,smart_TAFH_NHR1,pfscan_TAFH_NHR1,pfscan_Znf_MYND,prints_ETO,prints_MTGR1	-	no_errors	CBFA2T2	HGNC	ENSG00000078699				177	0	0	191	14	6.82927
NECAB3	0	genome.wustl.edu	37	20	32248163	32248163	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	32248163	32248163	C	T	SNP	NECAB3	ENST00000246190	human	ensembl	74_37	-1	known	silent	c.426	p.T142	0.074	NULL	pfam_Antibiotic_mOase,pfam_EF_hand_dom,superfamily_Dimeric_a/b-barrel,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	NECAB3	HGNC	ENSG00000125967				41	0	0	56	7	11.1111
MAP1LC3A	0	genome.wustl.edu	37	20	33147564	33147564	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	33147564	33147564	G	A	SNP	MAP1LC3A	ENST00000360668	human	ensembl	74_37	+1	known	silent	c.228	p.T76	1.000	pfam_Atg8_fam,pfam_Atg12	pfam_Atg8_fam,pfam_Atg12	-	no_errors	MAP1LC3A	HGNC	ENSG00000101460				51	0	0	49	8	14.0351
MYH7B	0	genome.wustl.edu	37	20	33568472	33568472	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	33568472	33568472	G	A	SNP	MYH7B	ENST00000262873	human	ensembl	74_37	+1	novel	missense	c.560	p.R187H	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Myosin_S1_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7B	HGNC	ENSG00000078814				124	0	0	126	13	9.35252
PROCR	0	genome.wustl.edu	37	20	33764049	33764049	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	33764049	33764049	C	A	SNP	PROCR	ENST00000216968	human	ensembl	74_37	+1	known	missense	c.401	p.A134D	0.673	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	-	no_errors	PROCR	HGNC	ENSG00000101000				73	0	0	77	23	23
FAM83C	0	genome.wustl.edu	37	20	33874717	33874717	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	33874717	33874717	G	A	SNP	FAM83C	ENST00000374408	human	ensembl	74_37	-1	known	missense	c.1865	p.A622V	0.003	NULL	pfam_DUF1669	-	no_errors	FAM83C	HGNC	ENSG00000125998				52	0	0	55	7	11.2903
CEP250	0	genome.wustl.edu	37	20	34091280	34091280	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	34091280	34091280	C	T	SNP	CEP250	ENST00000397527	human	ensembl	74_37	+1	known	nonsense	c.5083	p.R1695*	0.694	NULL	superfamily_Prefoldin	-	no_errors	CEP250	HGNC	ENSG00000126001				131	0	0	131	15	10.274
NFS1	0	genome.wustl.edu	37	20	34262504	34262504	+	Silent	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	34262504	34262504	C	A	SNP	NFS1	ENST00000374092	human	ensembl	74_37	-1	known	silent	c.984	p.R328	0.207	pfam_Aminotrans_V/Cys_dSase,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase,pirsf_Cysteine_dSase_NifS,tigrfam_Cys_deSase	pfam_Aminotrans_V/Cys_dSase,pfam_ArAA_b-elim_lyase/Thr_aldolase,pfam_DegT/StrS_aminotransferase,superfamily_PyrdxlP-dep_Trfase,pirsf_Cysteine_dSase_NifS,tigrfam_Cys_deSase	-	no_errors	NFS1	HGNC	ENSG00000244005				89	0	0	87	9	9.375
ROMO1	0	genome.wustl.edu	37	20	34288780	34288780	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	34288780	34288780	C	T	SNP	ROMO1	ENST00000336695	human	ensembl	74_37	+1	known	silent	c.192	p.G64	0.789	pfam_Romo1	pfam_Romo1	-	no_errors	ROMO1	HGNC	ENSG00000125995				62	0	0	75	9	10.7143
PHF20	0	genome.wustl.edu	37	20	34526851	34526851	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	34526851	34526851	C	T	SNP	PHF20	ENST00000374012	human	ensembl	74_37	+1	known	missense	c.2533	p.R845C	1.000	NULL	pfam_DUF3776,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Tudor,smart_Znf_PHD,pfscan_Znf_C2H2	-	no_errors	PHF20	HGNC	ENSG00000025293				42	0	0	39	7	15.2174
EPB41L1	0	genome.wustl.edu	37	20	34773105	34773105	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	34773105	34773105	G	A	SNP	EPB41L1	ENST00000338074	human	ensembl	74_37	+1	known	silent	c.633	p.T211	0.002	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pirsf_Band_41_protein,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	pfam_Band_4.1_C,pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM_central,pfam_SAB_dom,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pirsf_Band_41_protein,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L1	HGNC	ENSG00000088367				42	0	0	42	9	17.6471
MROH8	0	genome.wustl.edu	37	20	35788560	35788560	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	35788560	35788560	C	T	SNP	MROH8	ENST00000400441	human	ensembl	74_37	-1	known	missense	c.668	p.R223H	0.033	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	MROH8	HGNC	ENSG00000101353				17	0	0	20	4	16.6667
ATRN	0	genome.wustl.edu	37	20	3584894	3584894	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	3584894	3584894	G	A	SNP	ATRN	ENST00000262919	human	ensembl	74_37	+1	known	nonsense	c.3786	p.W1262*	1.000	NULL	pfam_Kelch_1,pfam_Plexin_repeat,pfam_CUB_dom,superfamily_C-type_lectin_fold,superfamily_CUB_dom,superfamily_Plexin-like_fold,smart_EG-like_dom,smart_CUB_dom,smart_Plexin-like_fold,smart_C-type_lectin,smart_EGF_laminin,pfscan_CUB_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_C-type_lectin	-	no_errors	ATRN	HGNC	ENSG00000088812				72	0	0	61	13	17.5676
CTNNBL1	0	genome.wustl.edu	37	20	36500377	36500377	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	36500377	36500377	G	A	SNP	CTNNBL1	ENST00000405275	human	ensembl	74_37	+1	known	missense	c.1573	p.E525K	0.978	NULL	pfam_CTNNBL1_N,superfamily_ARM-type_fold	-	no_errors	CTNNBL1	HGNC	ENSG00000132792				46	0	0	52	4	7.14286
TGM2	0	genome.wustl.edu	37	20	36779458	36779458	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	36779458	36779458	C	T	SNP	TGM2	ENST00000361475	human	ensembl	74_37	-1	known	silent	c.435	p.A145	0.930	superfamily_Ig_E-set	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM2	HGNC	ENSG00000198959				110	1	0.900901	109	12	9.91736
SIGLEC1	0	genome.wustl.edu	37	20	3678463	3678463	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	3678463	3678463	C	A	SNP	SIGLEC1	ENST00000344754	human	ensembl	74_37	-1	known	missense	c.2104	p.A702S	0.010	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	SIGLEC1	HGNC	ENSG00000088827				36	0	0	40	10	20
SIGLEC1	0	genome.wustl.edu	37	20	3683963	3683963	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	3683963	3683963	G	A	SNP	SIGLEC1	ENST00000344754	human	ensembl	74_37	-1	known	missense	c.1109	p.A370V	0.000	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	SIGLEC1	HGNC	ENSG00000088827				55	0	0	66	5	7.04225
KIAA1755	0	genome.wustl.edu	37	20	36869866	36869866	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	36869866	36869866	G	T	SNP	KIAA1755	ENST00000279024	human	ensembl	74_37	-1	known	missense	c.667	p.P223T	0.001	NULL	superfamily_CRAL-TRIO_dom	-	no_errors	KIAA1755	HGNC	ENSG00000149633				63	0	0	53	26	32.9114
RALGAPB	0	genome.wustl.edu	37	20	37168459	37168459	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	37168459	37168459	T	A	SNP	RALGAPB	ENST00000262879	human	ensembl	74_37	+1	known	missense	c.2420	p.I807N	1.000	NULL	superfamily_ARM-type_fold,pfscan_Rap_GAP_dom	-	no_errors	RALGAPB	HGNC	ENSG00000170471				68	0	0	98	6	5.76923
RALGAPB	0	genome.wustl.edu	37	20	37194098	37194098	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	37194098	37194098	T	C	SNP	RALGAPB	ENST00000262879	human	ensembl	74_37	+1	known	missense	c.3794	p.V1265A	1.000	pfscan_Rap_GAP_dom	superfamily_ARM-type_fold,pfscan_Rap_GAP_dom	-	no_errors	RALGAPB	HGNC	ENSG00000170471				191	0	0	205	21	9.29204
SLC32A1	0	genome.wustl.edu	37	20	37353656	37353656	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	37353656	37353656	G	A	SNP	SLC32A1	ENST00000217420	human	ensembl	74_37	+1	known	missense	c.289	p.G97S	0.834	NULL	pfam_AA_transpt_TM	-	no_errors	SLC32A1	HGNC	ENSG00000101438				47	0	0	49	4	7.54717
SLC32A1	0	genome.wustl.edu	37	20	37356122	37356122	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	37356122	37356122	G	A	SNP	SLC32A1	ENST00000217420	human	ensembl	74_37	+1	known	missense	c.418	p.A140T	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC32A1	HGNC	ENSG00000101438				72	0	0	63	14	18.1818
SLC32A1	0	genome.wustl.edu	37	20	37356232	37356232	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	37356232	37356232	C	T	SNP	SLC32A1	ENST00000217420	human	ensembl	74_37	+1	known	silent	c.528	p.D176	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC32A1	HGNC	ENSG00000101438				42	0	0	48	6	11.1111
SLC32A1	0	genome.wustl.edu	37	20	37357187	37357187	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	37357187	37357187	G	A	SNP	SLC32A1	ENST00000217420	human	ensembl	74_37	+1	known	missense	c.1483	p.A495T	0.997	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC32A1	HGNC	ENSG00000101438				23	0	0	34	6	15
ACTR5	0	genome.wustl.edu	37	20	37380797	37380797	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	37380797	37380797	G	A	SNP	ACTR5	ENST00000243903	human	ensembl	74_37	+1	known	missense	c.629	p.R210H	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related	-	no_errors	ACTR5	HGNC	ENSG00000101442				53	0	0	61	7	10.2941
PPP1R16B	0	genome.wustl.edu	37	20	37531340	37531340	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	37531340	37531340	C	T	SNP	PPP1R16B	ENST00000299824	human	ensembl	74_37	+1	known	missense	c.601	p.R201W	1.000	superfamily_Ankyrin_rpt-contain_dom,pirsf_Pase-1_reg_su_16AB_euk,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pirsf_Pase-1_reg_su_16AB_euk,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	PPP1R16B	HGNC	ENSG00000101445				95	0	0	136	10	6.84932
DHX35	0	genome.wustl.edu	37	20	37634988	37634988	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	37634988	37634988	G	A	SNP	DHX35	ENST00000252011	human	ensembl	74_37	+1	known	missense	c.1211	p.R404H	1.000	superfamily_P-loop_NTPase,pfscan_Helicase_C	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX35	HGNC	ENSG00000101452				140	0	0	127	25	16.4474
DHX35	0	genome.wustl.edu	37	20	37653971	37653971	+	Silent	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	37653971	37653971	C	A	SNP	DHX35	ENST00000252011	human	ensembl	74_37	+1	known	silent	c.1770	p.V590	1.000	pfam_DUF1605	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX35	HGNC	ENSG00000101452				319	0	0	202	203	50.1235
MAVS	0	genome.wustl.edu	37	20	3846580	3846580	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	3846580	3846580	T	C	SNP	MAVS	ENST00000428216	human	ensembl	74_37	+1	known	missense	c.1409	p.V470A	0.011	NULL	NULL	-	no_errors	MAVS	HGNC	ENSG00000088888				51	0	0	46	8	14.8148
PLCG1	0	genome.wustl.edu	37	20	39798904	39798904	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	39798904	39798904	G	A	SNP	PLCG1	ENST00000244007	human	ensembl	74_37	+1	known	missense	c.2803	p.A935T	1.000	superfamily_PLC-like_Pdiesterase_TIM-brl,pirsf_PLC-gamma	pfam_PLipase_C_PInositol-sp_X_dom,pfam_SH2,pfam_PLipase_C_Pinositol-sp_Y,pfam_Pleckstrin_homology,pfam_C2_dom,pfam_SH3_domain,pfam_SH3_2,pfam_PLipase_C_EF-hand-like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_SH2,smart_SH3_domain,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pirsf_PLC-gamma,pfscan_EF_hand_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C,prints_SH2	-	no_errors	PLCG1	HGNC	ENSG00000124181				43	0	0	40	14	25.9259
ZHX3	0	genome.wustl.edu	37	20	39831218	39831218	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	39831218	39831218	C	T	SNP	ZHX3	ENST00000309060	human	ensembl	74_37	-1	known	missense	c.2339	p.R780Q	1.000	superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	ZHX3	HGNC	ENSG00000174306				86	0	0	80	30	27.2727
LPIN3	0	genome.wustl.edu	37	20	39977798	39977798	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	39977798	39977798	G	A	SNP	LPIN3	ENST00000373257	human	ensembl	74_37	+1	known	nonsense	c.624	p.W208*	0.488	NULL	pfam_LNS2,pfam_Lipin_N,superfamily_HAD-like_dom,smart_LNS2	-	no_errors	LPIN3	HGNC	ENSG00000132793				99	0	0	71	20	21.978
CHD6	0	genome.wustl.edu	37	20	40050618	40050618	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	40050618	40050618	G	A	SNP	CHD6	ENST00000373233	human	ensembl	74_37	-1	known	missense	c.4657	p.L1553F	1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_BRK_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD6	HGNC	ENSG00000124177				51	0	0	52	18	25.7143
CHD6	0	genome.wustl.edu	37	20	40111989	40111989	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	40111989	40111989	G	A	SNP	CHD6	ENST00000373233	human	ensembl	74_37	-1	known	missense	c.2428	p.R810C	1.000	superfamily_P-loop_NTPase,pfscan_Helicase_C	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_BRK_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD6	HGNC	ENSG00000124177				82	0	0	81	21	20.5882
PTPRT	0	genome.wustl.edu	37	20	40714491	40714491	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	40714491	40714491	G	T	SNP	PTPRT	ENST00000373198	human	ensembl	74_37	-1	known	missense	c.3906	p.F1302L	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRT	HGNC	ENSG00000196090				66	0	0	76	10	11.6279
RBCK1	0	genome.wustl.edu	37	20	409612	409612	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	409612	409612	C	T	SNP	RBCK1	ENST00000356286	human	ensembl	74_37	+1	known	silent	c.1326	p.G442	0.013	pfam_Znf_C6HC	pfam_Znf_C6HC,pfam_Znf_RanBP2,smart_Znf_RanBP2,smart_Znf_RING,pfscan_Znf_RanBP2,pfscan_Znf_RING,pfscan_Ubiquitin_supergroup	-	no_errors	RBCK1	HGNC	ENSG00000125826				23	0	0	12	11	47.8261
PTPRT	0	genome.wustl.edu	37	20	41400120	41400120	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	41400120	41400120	G	A	SNP	PTPRT	ENST00000373198	human	ensembl	74_37	-1	known	silent	c.639	p.C213	1.000	pfscan_Ig-like_dom	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRT	HGNC	ENSG00000196090				249	0	0	311	58	15.7182
SMOX	0	genome.wustl.edu	37	20	4155700	4155700	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	4155700	4155700	G	A	SNP	SMOX	ENST00000484515	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SMOX	HGNC	ENSG00000088826				118	0	0	125	20	13.7931
ADRA1D	0	genome.wustl.edu	37	20	4202178	4202178	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	4202178	4202178	C	T	SNP	ADRA1D	ENST00000379453	human	ensembl	74_37	-1	known	missense	c.1711	p.D571N	1.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_ADRA1D_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	ADRA1D	HGNC	ENSG00000171873				33	0	0	49	11	18.3333
SRSF6	0	genome.wustl.edu	37	20	42088823	42088823	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	42088823	42088823	C	A	SNP	SRSF6	ENST00000244020	human	ensembl	74_37	+1	known	missense	c.532	p.L178I	1.000	smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,pfam_RRM_3,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SRSF6	HGNC	ENSG00000124193				52	0	0	46	12	20.6897
MYBL2	0	genome.wustl.edu	37	20	42311438	42311438	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	42311438	42311438	G	A	SNP	MYBL2	ENST00000217026	human	ensembl	74_37	+1	known	missense	c.191	p.R64H	1.000	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	pfam_C-myb_C,pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MYBL2	HGNC	ENSG00000101057				323	1	0.308642	348	45	11.4504
MYBL2	0	genome.wustl.edu	37	20	42338670	42338670	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	42338670	42338670	G	A	SNP	MYBL2	ENST00000217026	human	ensembl	74_37	+1	known	missense	c.1573	p.A525T	1.000	pfam_C-myb_C	pfam_C-myb_C,pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MYBL2	HGNC	ENSG00000101057				228	0	0	251	39	13.4483
JPH2	0	genome.wustl.edu	37	20	42815111	42815111	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	42815111	42815111	G	A	SNP	JPH2	ENST00000372980	human	ensembl	74_37	-1	known	missense	c.235	p.R79C	1.000	smart_MORN,pirsf_Junctophilin	pfam_MORN,smart_MORN,pirsf_Junctophilin	-	no_errors	JPH2	HGNC	ENSG00000149596				52	0	0	69	13	15.8537
HNF4A	0	genome.wustl.edu	37	20	43052918	43052918	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	43052918	43052918	C	T	SNP	HNF4A	ENST00000443598	human	ensembl	74_37	+1	known	missense	c.1153	p.R385W	0.001	NULL	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Retinoid-X_rcpt/HNF4,prints_COUP_TF	-	no_errors	HNF4A	HGNC	ENSG00000101076				26	0	0	16	5	23.8095
PABPC1L	0	genome.wustl.edu	37	20	43559194	43559194	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	43559194	43559194	C	T	SNP	PABPC1L	ENST00000217073	human	ensembl	74_37	+1	known	missense	c.1066	p.R356C	0.996	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom,tigrfam_PABP_1234	pfam_RRM_dom,pfam_PABP_HYD,superfamily_PABP_HYD,smart_RRM_dom,smart_RRM_dom_euk,smart_PABP_HYD,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC1L	HGNC	ENSG00000101104				132	0	0	167	9	5.11364
STK4	0	genome.wustl.edu	37	20	43607098	43607098	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	43607098	43607098	T	C	SNP	STK4	ENST00000372806	human	ensembl	74_37	+1	known	missense	c.131	p.V44A	0.999	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Mst1_SARAH_domain,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SARAH_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	STK4	HGNC	ENSG00000101109				68	0	0	92	9	8.91089
RBPJL	0	genome.wustl.edu	37	20	43940918	43940918	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	43940918	43940918	C	T	SNP	RBPJL	ENST00000343694	human	ensembl	74_37	+1	known	missense	c.502	p.R168W	1.000	pfam_LAG1_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_Beta-trefoil_DNA-bd_dom,pfam_LAG1_DNA-bd,superfamily_Beta-trefoil_DNA-bd_dom,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set	-	no_errors	RBPJL	HGNC	ENSG00000124232				51	0	0	34	7	17.0732
ZNF335	0	genome.wustl.edu	37	20	44592274	44592274	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	44592274	44592274	C	T	SNP	ZNF335	ENST00000322927	human	ensembl	74_37	-1	known	silent	c.1371	p.S457	0.371	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF335	HGNC	ENSG00000198026				158	0	0	193	16	7.6555
SLC12A5	0	genome.wustl.edu	37	20	44678261	44678261	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	44678261	44678261	G	A	SNP	SLC12A5	ENST00000454036	human	ensembl	74_37	+1	known	silent	c.2082	p.R694	1.000	pfam_AA-permease/SLC12A_dom,tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A5	HGNC	ENSG00000124140				15	0	0	20	3	13.0435
SLC12A5	0	genome.wustl.edu	37	20	44680471	44680471	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	44680471	44680471	G	A	SNP	SLC12A5	ENST00000454036	human	ensembl	74_37	+1	known	missense	c.2408	p.R803H	0.998	tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A5	HGNC	ENSG00000124140				51	0	0	40	12	23.0769
SLC12A5	0	genome.wustl.edu	37	20	44685882	44685882	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	44685882	44685882	G	A	SNP	SLC12A5	ENST00000454036	human	ensembl	74_37	+1	known	missense	c.3268	p.A1090T	0.998	tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A5	HGNC	ENSG00000124140				105	0	0	122	16	11.5942
NCOA5	0	genome.wustl.edu	37	20	44698981	44698981	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	44698981	44698981	A	G	SNP	NCOA5	ENST00000290231	human	ensembl	74_37	-1	known	missense	c.233	p.V78A	0.995	NULL	superfamily_Anticodon-bd	-	no_errors	NCOA5	HGNC	ENSG00000124160				164	0	0	177	18	9.23077
CDH22	0	genome.wustl.edu	37	20	44845612	44845612	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	44845612	44845612	G	A	SNP	CDH22	ENST00000372262	human	ensembl	74_37	-1	known	missense	c.691	p.P231S	0.999	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,superfamily_MFS_dom_general_subst_transpt,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH22	HGNC	ENSG00000149654				53	0	0	58	6	9.375
ELMO2	0	genome.wustl.edu	37	20	45003964	45003964	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	45003964	45003964	C	T	SNP	ELMO2	ENST00000439931	human	ensembl	74_37	-1	known	missense	c.1012	p.A338T	1.000	pfam_Engulfment_cell_motility_ELMO	pfam_DUF3361,pfam_Engulfment_cell_motility_ELMO,superfamily_ARM-type_fold	-	no_errors	ELMO2	HGNC	ENSG00000062598				74	0	0	78	17	17.8947
SLC13A3	0	genome.wustl.edu	37	20	45212284	45212284	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	45212284	45212284	G	A	SNP	SLC13A3	ENST00000435032	human	ensembl	74_37	-1	known	missense	c.14	p.A5V	0.001	NULL	pfam_Na/sul_symport	-	no_errors	SLC13A3	HGNC	ENSG00000158296				75	0	0	92	32	25.8065
EYA2	0	genome.wustl.edu	37	20	45702898	45702898	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	45702898	45702898	G	A	SNP	EYA2	ENST00000327619	human	ensembl	74_37	+1	known	silent	c.585	p.S195	0.612	NULL	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_EYA	-	no_errors	EYA2	HGNC	ENSG00000064655				95	0	0	105	8	7.07965
NCOA3	0	genome.wustl.edu	37	20	46264165	46264165	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	46264165	46264165	G	A	SNP	NCOA3	ENST00000371998	human	ensembl	74_37	+1	known	silent	c.1212	p.S404	0.210	pirsf_Nuclear_rcpt_coactivator	pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_SRC-1,pfam_PAS_fold,superfamily_PAS,superfamily_Nuc_rcpt_coact,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NCOA3	HGNC	ENSG00000124151				79	0	0	67	9	11.8421
PRNP	0	genome.wustl.edu	37	20	4680430	4680430	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	4680430	4680430	G	A	SNP	PRNP	ENST00000379440	human	ensembl	74_37	+1	known	silent	c.564	p.T188	0.002	pfam_Prion/Doppel_prot_b-ribbon_dom,superfamily_Prion/Doppel_prot_b-ribbon_dom,smart_Prion	pfam_Prion/Doppel_prot_b-ribbon_dom,pfam_Prion_N_dom,superfamily_Prion/Doppel_prot_b-ribbon_dom,smart_Prion,prints_Prion	-	no_errors	PRNP	HGNC	ENSG00000171867				90	0	0	99	23	18.8525
PRNT	0	genome.wustl.edu	37	20	4713073	4713073	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	4713073	4713073	C	T	SNP	PRNT	ENST00000326539	human	ensembl	74_37	-1	known	missense	c.250	p.A84T	0.000	NULL	NULL	-	no_errors	PRNT	HGNC	ENSG00000180259				17	0	0	31	4	11.4286
PREX1	0	genome.wustl.edu	37	20	47247280	47247280	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	47247280	47247280	C	T	SNP	PREX1	ENST00000371941	human	ensembl	74_37	-1	known	missense	c.4579	p.V1527I	0.222	NULL	pfam_DH-domain,pfam_DEP_dom,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX1	HGNC	ENSG00000124126				74	0	0	71	6	7.79221
PREX1	0	genome.wustl.edu	37	20	47364404	47364404	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	47364404	47364404	C	T	SNP	PREX1	ENST00000371941	human	ensembl	74_37	-1	known	missense	c.233	p.R78H	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_DEP_dom,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX1	HGNC	ENSG00000124126				31	0	0	37	4	9.7561
ARFGEF2	0	genome.wustl.edu	37	20	47614883	47614883	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	47614883	47614883	C	T	SNP	ARFGEF2	ENST00000371917	human	ensembl	74_37	+1	known	silent	c.3273	p.V1091	1.000	superfamily_ARM-type_fold	pfam_Sec7_dom,pfam_DUF1981_Sec7_assoc,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	-	no_errors	ARFGEF2	HGNC	ENSG00000124198				85	0	0	97	14	12.6126
STAU1	0	genome.wustl.edu	37	20	47734608	47734608	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	47734608	47734608	C	T	SNP	STAU1	ENST00000371856	human	ensembl	74_37	-1	known	missense	c.1215	p.M405I	1.000	NULL	pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,pfscan_dsRNA-bd_dom	-	no_errors	STAU1	HGNC	ENSG00000124214				103	0	0	115	10	8
SLC9A8	0	genome.wustl.edu	37	20	48503391	48503391	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	48503391	48503391	G	A	SNP	SLC9A8	ENST00000417961	human	ensembl	74_37	+1	known	missense	c.1642	p.A548T	1.000	NULL	pfam_Cation/H_exchanger,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A8	HGNC	ENSG00000197818				57	0	0	61	7	10.2941
TMEM189	0	genome.wustl.edu	37	20	48741643	48741643	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	48741643	48741643	G	A	SNP	TMEM189	ENST00000371652	human	ensembl	74_37	-1	known	silent	c.765	p.G255	0.432	pfam_KuaUb-conj-enz_UEV1	pfam_KuaUb-conj-enz_UEV1	-	no_errors	TMEM189	HGNC	ENSG00000240849				37	0	0	51	16	23.8806
PARD6B	0	genome.wustl.edu	37	20	49366779	49366779	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	49366779	49366779	C	T	SNP	PARD6B	ENST00000371610	human	ensembl	74_37	+1	known	silent	c.873	p.S291	0.295	NULL	pfam_OPR_PB1,pfam_PDZ,superfamily_PDZ,smart_OPR_PB1,smart_PDZ,pfscan_PDZ	-	no_errors	PARD6B	HGNC	ENSG00000124171				160	0	0	204	16	7.27273
BCAS4	0	genome.wustl.edu	37	20	49446904	49446904	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	49446904	49446904	T	C	SNP	BCAS4	ENST00000358791	human	ensembl	74_37	+1	known	missense	c.341	p.V114A	0.994	NULL	NULL	-	no_errors	BCAS4	HGNC	ENSG00000124243				70	0	0	97	15	13.3929
SALL4	0	genome.wustl.edu	37	20	50407173	50407173	+	Silent	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	50407173	50407173	G	T	SNP	SALL4	ENST00000217086	human	ensembl	74_37	-1	known	silent	c.1849	p.R617	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL4	HGNC	ENSG00000101115				64	0	0	67	13	16.25
SALL4	0	genome.wustl.edu	37	20	50408447	50408447	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	50408447	50408447	G	A	SNP	SALL4	ENST00000217086	human	ensembl	74_37	-1	known	missense	c.575	p.A192V	0.999	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL4	HGNC	ENSG00000101115				113	0	0	115	31	21.2329
SALL4	0	genome.wustl.edu	37	20	50408840	50408840	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	50408840	50408840	G	A	SNP	SALL4	ENST00000217086	human	ensembl	74_37	-1	known	missense	c.182	p.A61V	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL4	HGNC	ENSG00000101115				68	0	0	93	7	7
ZFP64	0	genome.wustl.edu	37	20	50701279	50701279	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	50701279	50701279	G	A	SNP	ZFP64	ENST00000361387	human	ensembl	74_37	-1	known	silent	c.1755	p.C585	0.796	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP64	HGNC	ENSG00000020256				37	0	0	39	9	18.75
ZFP64	0	genome.wustl.edu	37	20	50781293	50781293	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	50781293	50781293	C	G	SNP	ZFP64	ENST00000216923	human	ensembl	74_37	-1	known	missense	c.452	p.C151S	1.000	smart_Znf_C2H2-like	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP64	HGNC	ENSG00000020256				65	0	0	68	6	8.10811
ZNF217	0	genome.wustl.edu	37	20	52198090	52198090	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	52198090	52198090	C	T	SNP	ZNF217	ENST00000302342	human	ensembl	74_37	-1	known	missense	c.1276	p.A426T	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF217	HGNC	ENSG00000171940				58	0	0	43	7	14
ZNF217	0	genome.wustl.edu	37	20	52198529	52198529	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	52198529	52198529	C	T	SNP	ZNF217	ENST00000302342	human	ensembl	74_37	-1	known	silent	c.837	p.T279	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF217	HGNC	ENSG00000171940				137	0	0	138	11	7.38255
PROKR2	0	genome.wustl.edu	37	20	5283032	5283032	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	5283032	5283032	C	T	SNP	PROKR2	ENST00000217270	human	ensembl	74_37	-1	known	missense	c.809	p.R270H	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	PROKR2	HGNC	ENSG00000101292				35	0	0	43	7	14
DOK5	0	genome.wustl.edu	37	20	53171481	53171481	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	53171481	53171481	C	T	SNP	DOK5	ENST00000262593	human	ensembl	74_37	+1	known	nonsense	c.76	p.R26*	0.819	pfam_Pleckstrin_homology,smart_Pleckstrin_homology	pfam_Insln_rcpt_S1,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	-	no_errors	DOK5	HGNC	ENSG00000101134				67	0	0	66	7	9.58904
AURKA	0	genome.wustl.edu	37	20	54959346	54959346	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	54959346	54959346	C	T	SNP	AURKA	ENST00000312783	human	ensembl	74_37	-1	known	silent	c.354	p.Q118	0.997	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	AURKA	HGNC	ENSG00000087586				71	0	0	75	5	6.25
PCK1	0	genome.wustl.edu	37	20	56138777	56138777	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	56138777	56138777	G	A	SNP	PCK1	ENST00000319441	human	ensembl	74_37	+1	known	missense	c.955	p.A319T	0.001	pfam_PEP_carboxykinase_GTP,pirsf_PEP_carboxykinase_GTP	pfam_PEP_carboxykinase_GTP,superfamily_PEP_carboxykinase_N,pirsf_PEP_carboxykinase_GTP	-	no_errors	PCK1	HGNC	ENSG00000124253				117	0	0	126	22	14.8649
NPEPL1	0	genome.wustl.edu	37	20	57276144	57276144	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	57276144	57276144	C	T	SNP	NPEPL1	ENST00000356091	human	ensembl	74_37	+1	known	missense	c.752	p.A251V	1.000	pfam_Peptidase_M17_C	pfam_Peptidase_M17_C,prints_Leucine_aapep/pepB	-	no_errors	NPEPL1	HGNC	ENSG00000215440				15	0	0	11	3	21.4286
GNAS	0	genome.wustl.edu	37	20	57415849	57415849	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	57415849	57415849	T	A	SNP	GNAS	ENST00000313949	human	ensembl	74_37	+1	known	missense	c.688	p.S230T	0.951	pfam_NESP55	pfam_NESP55	-	no_errors	GNAS	HGNC	ENSG00000087460				24	0	0	16	7	30.4348
GNAS	0	genome.wustl.edu	37	20	57485765	57485765	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	57485765	57485765	C	T	SNP	GNAS	ENST00000354359	human	ensembl	74_37	+1	known	missense	c.1069	p.R357C	1.000	pfam_Gprotein_alpha_su,superfamily_P-loop_NTPase,smart_Gprotein_alpha_su,prints_Gprotein_alpha_S	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_S,prints_Gprotein_alpha_su	-	no_errors	GNAS	HGNC	ENSG00000087460				60	0	0	65	16	19.7531
NELFCD	0	genome.wustl.edu	37	20	57568154	57568154	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	57568154	57568154	C	T	SNP	NELFCD	ENST00000602795	human	ensembl	74_37	+1	known	missense	c.1385	p.A462V	1.000	pfam_TH1	pfam_TH1	-	no_errors	NELFCD	HGNC	ENSG00000101158				52	0	0	75	8	9.63855
TUBB1	0	genome.wustl.edu	37	20	57599575	57599575	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	57599575	57599575	G	A	SNP	TUBB1	ENST00000217133	human	ensembl	74_37	+1	known	missense	c.1093	p.A365T	0.998	pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tub_FtsZ_C,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Gamma_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB1	HGNC	ENSG00000101162				48	0	0	45	7	13.4615
ZNF831	0	genome.wustl.edu	37	20	57768478	57768478	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	57768478	57768478	G	A	SNP	ZNF831	ENST00000371030	human	ensembl	74_37	+1	novel	missense	c.2404	p.A802T	0.347	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF831	HGNC	ENSG00000124203				25	0	0	30	5	14.2857
PHACTR3	0	genome.wustl.edu	37	20	58349436	58349436	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	58349436	58349436	C	T	SNP	PHACTR3	ENST00000371015	human	ensembl	74_37	+1	known	silent	c.1065	p.A355	0.000	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR3	HGNC	ENSG00000087495				66	0	0	89	21	19.0909
SYCP2	0	genome.wustl.edu	37	20	58467173	58467173	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	58467173	58467173	A	G	SNP	SYCP2	ENST00000357552	human	ensembl	74_37	-1	known	missense	c.2236	p.S746P	0.983	NULL	NULL	-	no_errors	SYCP2	HGNC	ENSG00000196074				81	0	0	86	17	16.5049
CDH26	0	genome.wustl.edu	37	20	58562546	58562546	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	58562546	58562546	C	T	SNP	CDH26	ENST00000244047	human	ensembl	74_37	+1	known	silent	c.876	p.G292	0.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH26	HGNC	ENSG00000124215				49	0	0	63	13	17.1053
CDH26	0	genome.wustl.edu	37	20	58564055	58564055	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	58564055	58564055	C	T	SNP	CDH26	ENST00000244047	human	ensembl	74_37	+1	known	missense	c.1120	p.P374S	0.001	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH26	HGNC	ENSG00000124215				54	0	0	67	8	10.6667
CDH4	0	genome.wustl.edu	37	20	60504690	60504690	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	60504690	60504690	C	T	SNP	CDH4	ENST00000360469	human	ensembl	74_37	+1	known	missense	c.2029	p.R677C	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Cadherin/Desmocollin	-	no_errors	CDH4	HGNC	ENSG00000179242				67	0	0	78	5	6.0241
LSM14B	0	genome.wustl.edu	37	20	60699742	60699742	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	60699742	60699742	A	G	SNP	LSM14B	ENST00000253001	human	ensembl	74_37	+1	known	missense	c.197	p.Y66C	1.000	superfamily_LSM_dom	pfam_FDF_dom,superfamily_LSM_dom	-	no_errors	LSM14B	HGNC	ENSG00000149657				64	0	0	54	17	23.9437
LSM14B	0	genome.wustl.edu	37	20	60704997	60704997	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	60704997	60704997	A	G	SNP	LSM14B	ENST00000279068	human	ensembl	74_37	+1	known	missense	c.584	p.K195R	0.997	NULL	pfam_FDF_dom,superfamily_LSM_dom	-	no_errors	LSM14B	HGNC	ENSG00000149657				26	0	0	26	7	21.2121
PSMA7	0	genome.wustl.edu	37	20	60714232	60714232	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	60714232	60714232	G	A	SNP	PSMA7	ENST00000370873	human	ensembl	74_37	-1	known	missense	c.370	p.R124C	1.000	pfam_Proteasome_sua/b	pfam_Proteasome_sua/b,pfam_Proteasome_asu_N,smart_Proteasome_asu_N	-	no_errors	PSMA7	HGNC	ENSG00000101182				80	0	0	88	17	16.1905
SLCO4A1	0	genome.wustl.edu	37	20	61297900	61297900	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	61297900	61297900	C	T	SNP	SLCO4A1	ENST00000217159	human	ensembl	74_37	+1	known	missense	c.1445	p.A482V	0.999	pfam_OA_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO4A1	HGNC	ENSG00000101187				101	0	0	91	15	14.1509
DIDO1	0	genome.wustl.edu	37	20	61538508	61538508	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	61538508	61538508	G	A	SNP	DIDO1	ENST00000266070	human	ensembl	74_37	-1	known	silent	c.1365	p.C455	0.002	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	DIDO1	HGNC	ENSG00000101191				182	1	0.546448	145	34	18.9944
SLC17A9	0	genome.wustl.edu	37	20	61593988	61593988	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	61593988	61593988	C	T	SNP	SLC17A9	ENST00000370351	human	ensembl	74_37	+1	known	silent	c.510	p.T170	0.438	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A9	HGNC	ENSG00000101194				74	0	0	61	14	18.6667
YTHDF1	0	genome.wustl.edu	37	20	61833667	61833667	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	61833667	61833667	C	T	SNP	YTHDF1	ENST00000370339	human	ensembl	74_37	-1	known	missense	c.1625	p.R542H	1.000	NULL	pfam_YTH_domain,pfscan_YTH_domain	-	no_errors	YTHDF1	HGNC	ENSG00000149658				87	0	0	83	19	18.6275
CHRNA4	0	genome.wustl.edu	37	20	61981756	61981756	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	61981756	61981756	C	T	SNP	CHRNA4	ENST00000370263	human	ensembl	74_37	-1	known	missense	c.1007	p.R336H	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA4	HGNC	ENSG00000101204				87	0	0	89	17	16.0377
PTK6	0	genome.wustl.edu	37	20	62162144	62162144	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	62162144	62162144	G	A	SNP	PTK6	ENST00000217185	human	ensembl	74_37	-1	known	silent	c.969	p.N323	0.994	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	PTK6	HGNC	ENSG00000101213				58	0	0	55	11	16.6667
SRMS	0	genome.wustl.edu	37	20	62174716	62174716	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	62174716	62174716	G	A	SNP	SRMS	ENST00000217188	human	ensembl	74_37	-1	known	missense	c.596	p.A199V	0.499	smart_SH2,pfscan_SH2,prints_SH2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	SRMS	HGNC	ENSG00000125508				52	0	0	58	10	14.7059
HELZ2	0	genome.wustl.edu	37	20	62198324	62198324	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	62198324	62198324	G	A	SNP	HELZ2	ENST00000467148	human	ensembl	74_37	-1	known	missense	c.2387	p.A796V	0.019	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	HELZ2	HGNC	ENSG00000130589				62	0	0	56	7	11.1111
RTEL1	0	genome.wustl.edu	37	20	62319289	62319289	+	Splice_Site	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	62319289	62319289	G	A	SNP	RTEL1	ENST00000318100	human	ensembl	74_37	+1	known	splice_site	c.1482-1	e17-1	0.999	-	-	-	no_errors	RTEL1	HGNC	ENSG00000258366				39	0	0	27	5	15.625
ZGPAT	0	genome.wustl.edu	37	20	62366007	62366007	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	62366007	62366007	G	A	SNP	ZGPAT	ENST00000328969	human	ensembl	74_37	+1	known	silent	c.882	p.S294	0.000	NULL	pfam_G_patch_dom,smart_Znf_CCCH,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	ZGPAT	HGNC	ENSG00000197114				104	0	0	111	10	8.26446
DNAJC5	0	genome.wustl.edu	37	20	62560765	62560765	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	62560765	62560765	G	A	SNP	DNAJC5	ENST00000360864	human	ensembl	74_37	+1	known	missense	c.208	p.A70T	1.000	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJC5	HGNC	ENSG00000101152				83	0	0	75	20	21.0526
DNAJC5	0	genome.wustl.edu	37	20	62560817	62560817	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	62560817	62560817	C	T	SNP	DNAJC5	ENST00000360864	human	ensembl	74_37	+1	known	missense	c.260	p.A87V	1.000	superfamily_DnaJ_domain,prints_DnaJ_domain	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJC5	HGNC	ENSG00000101152				70	0	0	65	16	19.7531
PRPF6	0	genome.wustl.edu	37	20	62657327	62657327	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	62657327	62657327	C	T	SNP	PRPF6	ENST00000266079	human	ensembl	74_37	+1	known	silent	c.1944	p.A648	0.580	smart_HAT	pfam_PRP1_N,smart_HAT,smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	PRPF6	HGNC	ENSG00000101161				217	0	0	237	39	14.1304
SOX18	0	genome.wustl.edu	37	20	62680254	62680254	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	62680254	62680254	C	T	SNP	SOX18	ENST00000340356	human	ensembl	74_37	-1	known	silent	c.420	p.R140	1.000	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	pfam_Sox_C_TAD,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX18	HGNC	ENSG00000203883				16	0	0	6	4	40
SOX18	0	genome.wustl.edu	37	20	62680575	62680575	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	62680575	62680575	C	T	SNP	SOX18	ENST00000340356	human	ensembl	74_37	-1	known	missense	c.295	p.E99K	1.000	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	pfam_Sox_C_TAD,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX18	HGNC	ENSG00000203883				36	0	0	35	4	10.2564
TCEA2	0	genome.wustl.edu	37	20	62703233	62703233	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	62703233	62703233	G	A	SNP	TCEA2	ENST00000343484	human	ensembl	74_37	+1	known	missense	c.830	p.R277H	1.000	pfam_Znf_TFIIS,smart_Znf_TFIIS,pirsf_TF_IIS-rel,pfscan_Znf_TFIIS,tigrfam_TFSII	pfam_TFIIS_cen_dom,pfam_TFIIS_N,pfam_Znf_TFIIS,superfamily_TFIIS_cen_dom,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,smart_TFS2M,smart_Znf_TFIIS,pirsf_TF_IIS-rel,pfscan_Znf_TFIIS,tigrfam_TFSII	-	no_errors	TCEA2	HGNC	ENSG00000171703				40	0	0	34	9	20.9302
MYT1	0	genome.wustl.edu	37	20	62839458	62839458	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	62839458	62839458	G	A	SNP	MYT1	ENST00000536311	human	ensembl	74_37	+1	known	silent	c.909	p.E303	1.000	NULL	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	MYT1	HGNC	ENSG00000196132				77	0	0	53	14	20.8955
MYT1	0	genome.wustl.edu	37	20	62850293	62850293	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	62850293	62850293	G	A	SNP	MYT1	ENST00000536311	human	ensembl	74_37	+1	known	missense	c.1957	p.A653T	1.000	pfam_Myelin_TF	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	MYT1	HGNC	ENSG00000196132				42	0	0	48	14	22.5806
SLC52A3	0	genome.wustl.edu	37	20	745857	745857	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	745857	745857	C	T	SNP	SLC52A3	ENST00000217254	human	ensembl	74_37	-1	known	missense	c.562	p.A188T	0.005	NULL	pfam_Endogenous_retrovirus_rcpt	-	no_errors	SLC52A3	HGNC	ENSG00000101276				64	0	0	64	7	9.85915
PLCB1	0	genome.wustl.edu	37	20	8626776	8626776	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	8626776	8626776	G	A	SNP	PLCB1	ENST00000338037	human	ensembl	74_37	+1	known	missense	c.412	p.A138T	1.000	pirsf_PLC-beta	pirsf_PLC-beta,pfam_PLC-beta_C,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,prints_Pinositol_PLipase_C,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB1	HGNC	ENSG00000182621				49	0	0	75	4	5.06329
PLCB4	0	genome.wustl.edu	37	20	9360803	9360803	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	9360803	9360803	A	G	SNP	PLCB4	ENST00000334005	human	ensembl	74_37	+1	known	missense	c.847	p.K283E	1.000	pirsf_PLC-beta,pfam_PLipase_C_EF-hand-like	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_PLC-beta_CS,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,prints_Pinositol_PLipase_C,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB4	HGNC	ENSG00000101333				50	0	0	65	5	7.14286
PLCB4	0	genome.wustl.edu	37	20	9404483	9404483	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	9404483	9404483	G	A	SNP	PLCB4	ENST00000334005	human	ensembl	74_37	+1	known	missense	c.2372	p.G791D	1.000	pirsf_PLC-beta,superfamily_C2_dom,smart_C2_dom,prints_Pinositol_PLipase_C	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_PLC-beta_CS,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,prints_Pinositol_PLipase_C,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB4	HGNC	ENSG00000101333				48	0	0	55	5	8.33333
PAK7	0	genome.wustl.edu	37	20	9546783	9546783	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	9546783	9546783	C	T	SNP	PAK7	ENST00000353224	human	ensembl	74_37	-1	known	silent	c.1239	p.P413	0.990	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_CRIB_dom,superfamily_Kinase-like_dom,smart_CRIB_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRIB_dom,pfscan_Prot_kinase_dom	-	no_errors	PAK7	HGNC	ENSG00000101349				47	0	0	56	15	21.1268
TPTE	0	genome.wustl.edu	37	21	10934961	10934961	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	21	10934961	10934961	G	T	SNP	TPTE	ENST00000361285	human	ensembl	74_37	-1	known	missense	c.832	p.H278N	0.996	pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Ion_trans_dom,superfamily_C2_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TPTE	HGNC	ENSG00000166157				182	0	0	135	12	8.16327
BAGE2	0	genome.wustl.edu	37	21	11049593	11049593	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	21	11049593	11049593	G	A	SNP	BAGE2	ENST00000470054	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.992	-	-	-	no_errors	BAGE2	HGNC	ENSG00000187172				291	0	0	212	13	5.77778
POTED	0	genome.wustl.edu	37	21	14982927	14982927	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	21	14982927	14982927	C	T	SNP	POTED	ENST00000299443	human	ensembl	74_37	+1	known	silent	c.378	p.S126	0.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	POTED	HGNC	ENSG00000166351				125	0	0	66	9	12
LIPI	0	genome.wustl.edu	37	21	15561632	15561632	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	21	15561632	15561632	T	C	SNP	LIPI	ENST00000344577	human	ensembl	74_37	-1	known	missense	c.218	p.N73S	0.082	pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH	pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase	-	no_errors	LIPI	HGNC	ENSG00000188992				112	0	0	53	6	10.1695
TMPRSS15	0	genome.wustl.edu	37	21	19713822	19713822	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	21	19713822	19713822	G	A	SNP	TMPRSS15	ENST00000284885	human	ensembl	74_37	-1	known	missense	c.1472	p.A491V	0.995	pfam_MAM_dom,superfamily_ConA-like_lec_gl_sf,smart_MAM_dom,pfscan_MAM_dom	pfam_Peptidase_S1,pfam_CUB_dom,pfam_MAM_dom,pfam_SEA_dom,pfam_LDrepeatLR_classA_rpt,pfam_Peptidase_S1A_nudel,pfam_SRCR,superfamily_Trypsin-like_Pept_dom,superfamily_ConA-like_lec_gl_sf,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_Srcr_rcpt-rel,smart_SEA_dom,smart_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_MAM_dom,smart_Srcr_rcpt-rel,smart_Peptidase_S1,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_MAM_dom,pfscan_SEA_dom,pfscan_SRCR,pfscan_Peptidase_S1,prints_Peptidase_S1A,prints_LDrepeatLR_classA_rpt	-	no_errors	TMPRSS15	HGNC	ENSG00000154646				123	0	0	49	28	36.3636
ADAMTS5	0	genome.wustl.edu	37	21	28296541	28296541	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	21	28296541	28296541	G	A	SNP	ADAMTS5	ENST00000284987	human	ensembl	74_37	-1	known	missense	c.2624	p.S875L	0.078	superfamily_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS5,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS5	HGNC	ENSG00000154736				67	0	0	26	13	33.3333
MAP3K7CL	0	genome.wustl.edu	37	21	30532270	30532270	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	21	30532270	30532270	G	A	SNP	MAP3K7CL	ENST00000341618	human	ensembl	74_37	+1	known	silent	c.441	p.P147	0.082	NULL	NULL	-	no_errors	MAP3K7CL	HGNC	ENSG00000156265				128	0	0	92	9	8.91089
KRTAP24-1	0	genome.wustl.edu	37	21	31654991	31654991	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	21	31654991	31654991	T	C	SNP	KRTAP24-1	ENST00000340345	human	ensembl	74_37	-1	known	missense	c.260	p.D87G	0.019	pfam_KRTAP_PMG	pfam_KRTAP_PMG	-	no_errors	KRTAP24-1	HGNC	ENSG00000188694				74	0	0	31	5	13.8889
KRTAP19-3	0	genome.wustl.edu	37	21	31864073	31864073	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	21	31864073	31864073	C	T	SNP	KRTAP19-3	ENST00000334063	human	ensembl	74_37	-1	known	missense	c.203	p.R68H	0.000	pfam_KRTAP_type6/8/16/19/20	pfam_KRTAP_type6/8/16/19/20	-	no_errors	KRTAP19-3	HGNC	ENSG00000244025				212	0	0	94	49	34.2657
TIAM1	0	genome.wustl.edu	37	21	32526578	32526578	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	21	32526578	32526578	C	T	SNP	TIAM1	ENST00000286827	human	ensembl	74_37	-1	known	missense	c.3158	p.R1053H	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Raf-like_ras-bd,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM1	HGNC	ENSG00000156299				59	0	0	17	13	43.3333
URB1	0	genome.wustl.edu	37	21	33746004	33746004	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	21	33746004	33746004	C	T	SNP	URB1	ENST00000382751	human	ensembl	74_37	-1	known	silent	c.828	p.S276	0.006	pfam_Npa1_N	pfam_Npa1_N,superfamily_ARM-type_fold	-	no_errors	URB1	HGNC	ENSG00000142207				16	0	0	4	5	55.5556
IFNAR1	0	genome.wustl.edu	37	21	34717641	34717641	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	21	34717641	34717641	A	C	SNP	IFNAR1	ENST00000270139	human	ensembl	74_37	+1	known	missense	c.763	p.M255L	0.000	superfamily_Fibronectin_type3,pirsf_Interferon_alpha/beta_rcpt-1	pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3,pirsf_Interferon_alpha/beta_rcpt-1	-	no_errors	IFNAR1	HGNC	ENSG00000142166				75	0	0	45	4	8.16327
DOPEY2	0	genome.wustl.edu	37	21	37603096	37603096	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	21	37603096	37603096	G	A	SNP	DOPEY2	ENST00000399151	human	ensembl	74_37	+1	known	missense	c.2014	p.A672T	0.000	NULL	pfam_Dopey_N	-	no_errors	DOPEY2	HGNC	ENSG00000142197				76	0	0	34	22	39.2857
TTC3	0	genome.wustl.edu	37	21	38510956	38510956	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	21	38510956	38510956	A	T	SNP	TTC3	ENST00000354749	human	ensembl	74_37	+1	known	missense	c.1601	p.N534I	1.000	NULL	pfam_Znf_C3HC4_RING-type,superfamily_DEATH-like_dom,smart_TPR_repeat,smart_Znf_RING,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	TTC3	HGNC	ENSG00000182670				140	0	0	86	8	8.51064
DYRK1A	0	genome.wustl.edu	37	21	38884778	38884778	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	21	38884778	38884778	G	T	SNP	DYRK1A	ENST00000398960	human	ensembl	74_37	+1	known	nonsense	c.2236	p.E746*	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	DYRK1A	HGNC	ENSG00000157540				125	0	0	59	12	16.9014
ERG	0	genome.wustl.edu	37	21	39755694	39755694	+	Silent	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	21	39755694	39755694	T	C	SNP	ERG	ENST00000398919	human	ensembl	74_37	-1	known	silent	c.1092	p.K364	0.970	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	pfam_Ets_dom,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ERG	HGNC	ENSG00000157554				56	0	0	47	4	7.84314
CSTB	0	genome.wustl.edu	37	21	45194175	45194175	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	21	45194175	45194175	C	T	SNP	CSTB	ENST00000291568	human	ensembl	74_37	-1	known	missense	c.205	p.V69M	0.092	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	pfam_Prot_inh_cystat,smart_Prot_inh_cystat,prints_Prot_inh_stefinA	-	no_errors	CSTB	HGNC	ENSG00000160213				109	0	0	24	16	40
AGPAT3	0	genome.wustl.edu	37	21	45401010	45401010	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	21	45401010	45401010	C	T	SNP	AGPAT3	ENST00000291572	human	ensembl	74_37	+1	known	silent	c.984	p.G328	0.032	NULL	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase	-	no_errors	AGPAT3	HGNC	ENSG00000160216				70	0	0	29	5	14.7059
TRAPPC10	0	genome.wustl.edu	37	21	45479056	45479056	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	21	45479056	45479056	G	A	SNP	TRAPPC10	ENST00000291574	human	ensembl	74_37	+1	known	missense	c.751	p.A251T	1.000	NULL	NULL	-	no_errors	TRAPPC10	HGNC	ENSG00000160218				36	0	0	21	14	40
PWP2	0	genome.wustl.edu	37	21	45534069	45534069	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	21	45534069	45534069	C	T	SNP	PWP2	ENST00000291576	human	ensembl	74_37	+1	known	missense	c.236	p.A79V	0.998	superfamily_Quinonprotein_ADH-like_supfam,smart_WD40_repeat	pfam_WD40_repeat,pfam_SSU_processome_Utp12,superfamily_Quinonprotein_ADH-like_supfam,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PWP2	HGNC	ENSG00000241945				55	0	0	20	15	42.8571
PFKL	0	genome.wustl.edu	37	21	45738404	45738404	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	21	45738404	45738404	G	A	SNP	PFKL	ENST00000403390	human	ensembl	74_37	+1	known	missense	c.1129	p.D377N	0.971	pirsf_6-phosphofructokinase_euk,tigrfam_6-phosphofructokinase_euk	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,prints_Phosphofructokinase,tigrfam_6-phosphofructokinase_euk	-	no_errors	PFKL	HGNC	ENSG00000141959				25	0	0	18	4	18.1818
PFKL	0	genome.wustl.edu	37	21	45741708	45741708	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	21	45741708	45741708	C	T	SNP	PFKL	ENST00000403390	human	ensembl	74_37	+1	known	missense	c.1429	p.H477Y	1.000	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,tigrfam_6-phosphofructokinase_euk	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,prints_Phosphofructokinase,tigrfam_6-phosphofructokinase_euk	-	no_errors	PFKL	HGNC	ENSG00000141959				66	0	0	14	9	39.1304
PFKL	0	genome.wustl.edu	37	21	45743770	45743770	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	21	45743770	45743770	G	A	SNP	PFKL	ENST00000403390	human	ensembl	74_37	+1	known	missense	c.1760	p.G587D	1.000	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,tigrfam_6-phosphofructokinase_euk	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,prints_Phosphofructokinase,tigrfam_6-phosphofructokinase_euk	-	no_errors	PFKL	HGNC	ENSG00000141959				27	0	0	12	4	25
TRPM2	0	genome.wustl.edu	37	21	45786763	45786763	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	21	45786763	45786763	C	T	SNP	TRPM2	ENST00000300482	human	ensembl	74_37	+1	known	missense	c.550	p.P184S	0.788	NULL	pfam_Ion_trans_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	TRPM2	HGNC	ENSG00000142185				30	0	0	20	3	13.0435
POFUT2	0	genome.wustl.edu	37	21	46687543	46687543	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	21	46687543	46687543	G	A	SNP	POFUT2	ENST00000349485	human	ensembl	74_37	-1	known	silent	c.1098	p.G366	0.501	pfam_GDP-Fuc_O-FucTrfase,superfamily_DUF749	pfam_GDP-Fuc_O-FucTrfase,superfamily_DUF749	-	no_errors	POFUT2	HGNC	ENSG00000186866				180	1	0.552486	71	50	41.3223
POFUT2	0	genome.wustl.edu	37	21	46705800	46705800	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	21	46705800	46705800	G	A	SNP	POFUT2	ENST00000349485	human	ensembl	74_37	-1	known	missense	c.175	p.R59C	1.000	pfam_GDP-Fuc_O-FucTrfase	pfam_GDP-Fuc_O-FucTrfase,superfamily_DUF749	-	no_errors	POFUT2	HGNC	ENSG00000186866				107	0	0	48	7	12.7273
COL6A2	0	genome.wustl.edu	37	21	47545767	47545767	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	21	47545767	47545767	C	T	SNP	COL6A2	ENST00000300527	human	ensembl	74_37	+1	known	missense	c.2038	p.R680C	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A2	HGNC	ENSG00000142173				39	0	0	14	7	33.3333
MCM3AP	0	genome.wustl.edu	37	21	47665034	47665034	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	21	47665034	47665034	G	A	SNP	MCM3AP	ENST00000291688	human	ensembl	74_37	-1	known	silent	c.4725	p.Y1575	0.097	NULL	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	-	no_errors	MCM3AP	HGNC	ENSG00000160294				60	0	0	29	5	14.7059
MCM3AP	0	genome.wustl.edu	37	21	47671503	47671503	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	21	47671503	47671503	C	T	SNP	MCM3AP	ENST00000291688	human	ensembl	74_37	-1	known	silent	c.4230	p.S1410	0.000	NULL	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	-	no_errors	MCM3AP	HGNC	ENSG00000160294				59	0	0	45	5	10
PCNT	0	genome.wustl.edu	37	21	47832880	47832880	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	21	47832880	47832880	C	T	SNP	PCNT	ENST00000359568	human	ensembl	74_37	+1	known	missense	c.6124	p.R2042C	0.000	NULL	pfam_PACT_domain	-	no_errors	PCNT	HGNC	ENSG00000160299				50	0	0	22	10	31.25
DIP2A	0	genome.wustl.edu	37	21	47976004	47976004	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	21	47976004	47976004	G	T	SNP	DIP2A	ENST00000318711	human	ensembl	74_37	+1	known	missense	c.3501	p.K1167N	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2A	HGNC	ENSG00000160305				158	0	0	68	27	28.4211
DIP2A	0	genome.wustl.edu	37	21	47978163	47978163	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	21	47978163	47978163	C	T	SNP	DIP2A	ENST00000318711	human	ensembl	74_37	+1	known	missense	c.3829	p.R1277C	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2A	HGNC	ENSG00000160305				18	0	0	7	5	41.6667
DIP2A	0	genome.wustl.edu	37	21	47986475	47986475	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	21	47986475	47986475	C	T	SNP	DIP2A	ENST00000318711	human	ensembl	74_37	+1	known	missense	c.4345	p.R1449W	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2A	HGNC	ENSG00000160305				63	0	0	25	14	35.8974
TPTEP1	0	genome.wustl.edu	37	22	17119563	17119563	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	17119563	17119563	C	T	SNP	TPTEP1	ENST00000383140	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.023	-	-	-	no_errors	TPTEP1	HGNC	ENSG00000100181				94	0	0	58	25	30.1205
GAB4	0	genome.wustl.edu	37	22	17488874	17488874	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	17488874	17488874	C	T	SNP	GAB4	ENST00000400588	human	ensembl	74_37	-1	known	missense	c.131	p.G44D	0.747	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	GAB4	HGNC	ENSG00000215568				10	0	0	10	7	41.1765
IL17RA	0	genome.wustl.edu	37	22	17581248	17581248	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	17581248	17581248	C	T	SNP	IL17RA	ENST00000319363	human	ensembl	74_37	+1	known	missense	c.427	p.R143C	0.724	NULL	pfam_SEFIR	-	no_errors	IL17RA	HGNC	ENSG00000177663				142	0	0	100	32	24.2424
CECR6	0	genome.wustl.edu	37	22	17600948	17600948	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	17600948	17600948	G	A	SNP	CECR6	ENST00000331437	human	ensembl	74_37	-1	known	missense	c.1070	p.A357V	1.000	NULL	NULL	-	no_errors	CECR6	HGNC	ENSG00000183307				36	0	0	19	3	13.6364
ATP6V1E1	0	genome.wustl.edu	37	22	18095502	18095502	+	RNA	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	18095502	18095502	T	C	SNP	ATP6V1E1	ENST00000478963	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	ATP6V1E1	HGNC	ENSG00000131100				30	0	0	16	4	20
BID	0	genome.wustl.edu	37	22	18220811	18220811	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	18220811	18220811	C	T	SNP	BID	ENST00000317361	human	ensembl	74_37	-1	known	missense	c.686	p.R229H	0.002	pfam_BID	pfam_BID	-	no_errors	BID	HGNC	ENSG00000015475				79	0	0	72	5	6.49351
MICAL3	0	genome.wustl.edu	37	22	18368675	18368675	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	18368675	18368675	G	A	SNP	MICAL3	ENST00000441493	human	ensembl	74_37	-1	known	missense	c.2210	p.A737V	0.998	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,pfam_mOase_FAD-bd,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM,prints_Rng_hydrolase-like	-	no_errors	MICAL3	HGNC	ENSG00000243156				135	0	0	74	22	22.9167
TUBA8	0	genome.wustl.edu	37	22	18604435	18604435	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	18604435	18604435	G	A	SNP	TUBA8	ENST00000330423	human	ensembl	74_37	+1	known	missense	c.193	p.A65T	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Beta_tubulin	-	no_errors	TUBA8	HGNC	ENSG00000183785				39	0	0	26	13	33.3333
DGCR14	0	genome.wustl.edu	37	22	19127471	19127471	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	19127471	19127471	G	A	SNP	DGCR14	ENST00000252137	human	ensembl	74_37	-1	known	missense	c.467	p.T156M	1.000	pfam_Nuclear_protein_DGCR14	pfam_Nuclear_protein_DGCR14	-	no_errors	DGCR14	HGNC	ENSG00000100056				154	0	0	100	30	23.0769
HIRA	0	genome.wustl.edu	37	22	19346867	19346867	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	19346867	19346867	C	T	SNP	HIRA	ENST00000263208	human	ensembl	74_37	-1	known	silent	c.2226	p.A742	0.019	NULL	pfam_Hira,pfam_WD40_repeat,pfam_HIRA_B_motif,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	HIRA	HGNC	ENSG00000100084				49	0	0	26	10	27.7778
DGCR8	0	genome.wustl.edu	37	22	20073913	20073913	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	20073913	20073913	G	A	SNP	DGCR8	ENST00000351989	human	ensembl	74_37	+1	known	missense	c.427	p.D143N	0.017	NULL	pfam_dsRNA-bd_dom,superfamily_WW_dom,smart_WW_dom,smart_dsRNA-bd_dom,pfscan_WW_dom,pfscan_dsRNA-bd_dom	-	no_errors	DGCR8	HGNC	ENSG00000128191				72	0	0	44	4	8.33333
ZDHHC8	0	genome.wustl.edu	37	22	20128442	20128442	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	20128442	20128442	G	A	SNP	ZDHHC8	ENST00000405930	human	ensembl	74_37	+1	known	silent	c.801	p.P267	0.407	NULL	pfam_Znf_DHHC_palmitoyltrfase,superfamily_Plexin-like_fold,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC8	HGNC	ENSG00000099904				46	0	0	28	12	30
ZNF74	0	genome.wustl.edu	37	22	20759892	20759892	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	20759892	20759892	G	A	SNP	ZNF74	ENST00000356671	human	ensembl	74_37	+1	known	missense	c.569	p.R190H	0.002	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF74	HGNC	ENSG00000185252				15	0	0	12	6	33.3333
KLHL22	0	genome.wustl.edu	37	22	20838119	20838119	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	20838119	20838119	C	T	SNP	KLHL22	ENST00000470335	human	ensembl	74_37	-1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	KLHL22	HGNC	ENSG00000099910				55	0	0	21	8	27.5862
PI4KA	0	genome.wustl.edu	37	22	21062348	21062348	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	21062348	21062348	T	C	SNP	PI4KA	ENST00000255882	human	ensembl	74_37	-1	known	missense	c.6296	p.D2099G	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PI4KA	HGNC	ENSG00000241973				116	0	0	104	11	9.56522
SERPIND1	0	genome.wustl.edu	37	22	21134082	21134082	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	21134082	21134082	C	T	SNP	SERPIND1	ENST00000215727	human	ensembl	74_37	+1	known	missense	c.482	p.A161V	1.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPIND1	HGNC	ENSG00000099937				107	0	0	74	28	27.451
TUBA3FP	0	genome.wustl.edu	37	22	21363384	21363384	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	21363384	21363384	G	A	SNP	TUBA3FP	ENST00000292748	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TUBA3FP	HGNC	ENSG00000161149				77	0	0	46	14	23.3333
SLC7A4	0	genome.wustl.edu	37	22	21385306	21385306	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	21385306	21385306	G	A	SNP	SLC7A4	ENST00000382932	human	ensembl	74_37	-1	known	missense	c.796	p.R266W	0.284	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1	-	no_errors	SLC7A4	HGNC	ENSG00000099960				33	0	0	15	9	37.5
HIC2	0	genome.wustl.edu	37	22	21799218	21799218	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	21799218	21799218	G	A	SNP	HIC2	ENST00000407464	human	ensembl	74_37	+1	known	missense	c.34	p.A12T	0.999	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	HIC2	HGNC	ENSG00000169635				37	0	0	29	5	14.7059
HIC2	0	genome.wustl.edu	37	22	21800560	21800560	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	21800560	21800560	C	T	SNP	HIC2	ENST00000407464	human	ensembl	74_37	+1	known	missense	c.1376	p.A459V	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	HIC2	HGNC	ENSG00000169635				80	0	0	55	5	8.33333
TOP3B	0	genome.wustl.edu	37	22	22314750	22314750	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	22314750	22314750	G	A	SNP	TOP3B	ENST00000357179	human	ensembl	74_37	-1	known	missense	c.1597	p.R533C	1.000	pfam_Topo_IA_cen,superfamily_Topo_IA_core_domain,smart_Topo_IA_DNA-bd	pfam_Topo_IA_cen,pfam_Toprim_domain,superfamily_Topo_IA_core_domain,smart_Toprim_domain,smart_Topo_IA_2,smart_Topo_IA_DNA-bd,prints_Topo_IA	-	no_errors	TOP3B	HGNC	ENSG00000100038				29	0	0	31	4	11.4286
BMS1P20	0	genome.wustl.edu	37	22	22664115	22664115	+	RNA	SNP	A	A	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	22664115	22664115	A	T	SNP	BMS1P20	ENST00000426066	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.991	-	-	-	no_errors	BMS1P20	HGNC	ENSG00000236850				72	0	0	70	8	10.2564
IGLL1	0	genome.wustl.edu	37	22	23915549	23915549	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	23915549	23915549	C	T	SNP	IGLL1	ENST00000330377	human	ensembl	74_37	-1	known	silent	c.546	p.T182	0.005	pfam_Ig_C1-set,pfam_CD80_C2-set,smart_Ig_C1-set,pfscan_Ig-like_dom	pfam_Ig_C1-set,pfam_CD80_C2-set,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	IGLL1	HGNC	ENSG00000128322				72	0	0	43	23	34.8485
C22orf43	0	genome.wustl.edu	37	22	23974150	23974150	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	23974150	23974150	C	T	SNP	C22orf43	ENST00000317749	human	ensembl	74_37	-1	known	missense	c.61	p.A21T	0.001	NULL	NULL	-	no_errors	C22orf43	HGNC	ENSG00000189269				59	0	0	38	11	22.449
CABIN1	0	genome.wustl.edu	37	22	24567727	24567727	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	24567727	24567727	G	A	SNP	CABIN1	ENST00000263119	human	ensembl	74_37	+1	known	missense	c.5804	p.R1935Q	1.000	NULL	pfam_MEF2_binding,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CABIN1	HGNC	ENSG00000099991				100	0	0	63	26	29.2135
SUSD2	0	genome.wustl.edu	37	22	24580172	24580172	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	24580172	24580172	G	A	SNP	SUSD2	ENST00000358321	human	ensembl	74_37	+1	known	missense	c.508	p.G170S	1.000	NULL	pfam_AMOP,pfam_VWF_type-D,pfam_Sushi_SCR_CCP,pfam_Somatomedin_B_dom,superfamily_Sushi_SCR_CCP,superfamily_Ig_E-set,smart_AMOP,smart_VWF_type-D,smart_Sushi_SCR_CCP,pfscan_AMOP,pfscan_Somatomedin_B_dom,pfscan_Sushi_SCR_CCP	-	no_errors	SUSD2	HGNC	ENSG00000099994				69	0	0	61	13	17.5676
ADRBK2	0	genome.wustl.edu	37	22	26110386	26110386	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	26110386	26110386	C	T	SNP	ADRBK2	ENST00000324198	human	ensembl	74_37	+1	known	silent	c.1503	p.C501	0.998	superfamily_Kinase-like_dom,smart_AGC-kinase_C,prints_GPCR_kinase	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RGS_dom,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Regulat_G_prot_signal_superfam,pfscan_Prot_kinase_dom,prints_GPCR_kinase	-	no_errors	ADRBK2	HGNC	ENSG00000100077				79	0	0	60	17	22.0779
MYO18B	0	genome.wustl.edu	37	22	26157081	26157081	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	26157081	26157081	G	A	SNP	MYO18B	ENST00000335473	human	ensembl	74_37	+1	known	missense	c.22	p.A8T	1.000	NULL	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,superfamily_tRNA-bd_arm,superfamily_Ribosomal_zn-bd,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO18B	HGNC	ENSG00000133454				81	0	0	62	13	17.3333
MYO18B	0	genome.wustl.edu	37	22	26173737	26173737	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	26173737	26173737	G	A	SNP	MYO18B	ENST00000335473	human	ensembl	74_37	+1	known	missense	c.2057	p.G686D	0.731	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,superfamily_tRNA-bd_arm,superfamily_Ribosomal_zn-bd,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO18B	HGNC	ENSG00000133454				55	0	0	37	8	17.7778
MYO18B	0	genome.wustl.edu	37	22	26299648	26299648	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	26299648	26299648	G	T	SNP	MYO18B	ENST00000335473	human	ensembl	74_37	+1	known	missense	c.4998	p.Q1666H	0.911	NULL	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,superfamily_tRNA-bd_arm,superfamily_Ribosomal_zn-bd,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO18B	HGNC	ENSG00000133454				20	0	0	10	4	28.5714
SEZ6L	0	genome.wustl.edu	37	22	26688919	26688919	+	Silent	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	26688919	26688919	A	G	SNP	SEZ6L	ENST00000248933	human	ensembl	74_37	+1	known	silent	c.642	p.T214	0.067	NULL	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	SEZ6L	HGNC	ENSG00000100095				79	0	0	39	27	40.9091
ASPHD2	0	genome.wustl.edu	37	22	26839084	26839084	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	26839084	26839084	G	A	SNP	ASPHD2	ENST00000215906	human	ensembl	74_37	+1	known	missense	c.1022	p.R341Q	0.934	pfam_Asp_Arg_b-Hydrxlase	pfam_Asp_Arg_b-Hydrxlase	-	no_errors	ASPHD2	HGNC	ENSG00000128203				233	0	0	147	44	23.0366
TFIP11	0	genome.wustl.edu	37	22	26890122	26890122	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	26890122	26890122	G	A	SNP	TFIP11	ENST00000405938	human	ensembl	74_37	-1	known	missense	c.2141	p.A714V	0.999	NULL	pfam_GCFC_dom,pfam_TIP_N,pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	TFIP11	HGNC	ENSG00000100109				73	0	0	54	21	28
TPST2	0	genome.wustl.edu	37	22	26937372	26937372	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	26937372	26937372	G	A	SNP	TPST2	ENST00000338754	human	ensembl	74_37	-1	known	silent	c.225	p.G75	0.964	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	TPST2	HGNC	ENSG00000128294				24	0	0	22	8	26.6667
MN1	0	genome.wustl.edu	37	22	28194145	28194145	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	28194145	28194145	C	T	SNP	MN1	ENST00000302326	human	ensembl	74_37	-1	known	missense	c.2387	p.R796H	0.998	NULL	NULL	-	no_errors	MN1	HGNC	ENSG00000169184				14	0	0	6	3	33.3333
MN1	0	genome.wustl.edu	37	22	28195159	28195159	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	28195159	28195159	C	T	SNP	MN1	ENST00000302326	human	ensembl	74_37	-1	known	missense	c.1373	p.R458H	1.000	NULL	NULL	-	no_errors	MN1	HGNC	ENSG00000169184				17	0	0	11	3	21.4286
XBP1	0	genome.wustl.edu	37	22	29191491	29191491	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	29191491	29191491	A	C	SNP	XBP1	ENST00000344347	human	ensembl	74_37	-1	known	missense	c.803	p.I268R	0.908	NULL	pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	XBP1	HGNC	ENSG00000100219				39	0	0	44	3	6.38298
CABP7	0	genome.wustl.edu	37	22	30125542	30125542	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	30125542	30125542	G	A	SNP	CABP7	ENST00000216144	human	ensembl	74_37	+1	known	missense	c.632	p.R211H	1.000	NULL	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	CABP7	HGNC	ENSG00000100314				43	0	0	24	7	22.5806
ASCC2	0	genome.wustl.edu	37	22	30221725	30221725	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	30221725	30221725	C	T	SNP	ASCC2	ENST00000307790	human	ensembl	74_37	-1	known	silent	c.126	p.P42	0.979	NULL	pfam_CUE,superfamily_UBA-like,smart_CUE,pfscan_CUE	-	no_errors	ASCC2	HGNC	ENSG00000100325				158	0	0	124	12	8.82353
SF3A1	0	genome.wustl.edu	37	22	30730631	30730631	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	30730631	30730631	G	A	SNP	SF3A1	ENST00000215793	human	ensembl	74_37	-1	known	silent	c.2334	p.G778	0.004	pfam_Ubiquitin_dom,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	pfam_PRP21-like,pfam_Surp,pfam_Ubiquitin_dom,superfamily_Surp,smart_Surp,smart_Ubiquitin_dom,pfscan_Surp,pfscan_Ubiquitin_supergroup	-	no_errors	SF3A1	HGNC	ENSG00000099995				120	0	0	63	18	22.2222
SF3A1	0	genome.wustl.edu	37	22	30734847	30734847	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	30734847	30734847	C	T	SNP	SF3A1	ENST00000215793	human	ensembl	74_37	-1	known	silent	c.1674	p.P558	0.002	NULL	pfam_PRP21-like,pfam_Surp,pfam_Ubiquitin_dom,superfamily_Surp,smart_Surp,smart_Ubiquitin_dom,pfscan_Surp,pfscan_Ubiquitin_supergroup	-	no_errors	SF3A1	HGNC	ENSG00000099995				113	1	0.877193	78	9	10.3448
SMTN	0	genome.wustl.edu	37	22	31484712	31484712	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	31484712	31484712	C	T	SNP	SMTN	ENST00000347557	human	ensembl	74_37	+1	known	missense	c.322	p.R108C	1.000	pfam_Smoothelin	pfam_Smoothelin,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	SMTN	HGNC	ENSG00000183963				15	0	0	11	6	35.2941
INPP5J	0	genome.wustl.edu	37	22	31523363	31523363	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	31523363	31523363	C	T	SNP	INPP5J	ENST00000331075	human	ensembl	74_37	+1	known	silent	c.1632	p.S544	0.992	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	-	no_errors	INPP5J	HGNC	ENSG00000185133				20	0	0	19	3	13.6364
PLA2G3	0	genome.wustl.edu	37	22	31533804	31533804	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	31533804	31533804	G	A	SNP	PLA2G3	ENST00000215885	human	ensembl	74_37	-1	known	missense	c.958	p.R320C	0.001	NULL	pfam_PLipase_A2,superfamily_PLipase_A2_dom	-	no_errors	PLA2G3	HGNC	ENSG00000100078				126	1	0.787402	77	20	20.6186
EIF4ENIF1	0	genome.wustl.edu	37	22	31854475	31854475	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	31854475	31854475	G	A	SNP	EIF4ENIF1	ENST00000330125	human	ensembl	74_37	-1	known	missense	c.949	p.P317S	1.000	pfam_eIF4E_transporter	pfam_eIF4E_transporter	-	no_errors	EIF4ENIF1	HGNC	ENSG00000184708				53	0	0	55	6	9.83607
SLC5A4	0	genome.wustl.edu	37	22	32650199	32650199	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	32650199	32650199	G	A	SNP	SLC5A4	ENST00000266086	human	ensembl	74_37	-1	known	missense	c.137	p.A46V	0.997	pfscan_Na/solute_symporter	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A4	HGNC	ENSG00000100191				55	0	0	38	16	29.6296
MCM5	0	genome.wustl.edu	37	22	35802622	35802622	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	35802622	35802622	G	A	SNP	MCM5	ENST00000216122	human	ensembl	74_37	+1	known	missense	c.500	p.R167H	1.000	superfamily_NA-bd_OB-fold,smart_MCM_DNA-dep_ATPase,prints_MCM5	pfam_MCM_DNA-dep_ATPase,superfamily_NA-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM5,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM5	HGNC	ENSG00000100297				26	0	0	20	4	16.6667
RASD2	0	genome.wustl.edu	37	22	35947713	35947713	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	35947713	35947713	C	T	SNP	RASD2	ENST00000216127	human	ensembl	74_37	+1	known	silent	c.435	p.G145	0.247	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RASD2	HGNC	ENSG00000100302				26	0	0	19	7	26.9231
APOL6	0	genome.wustl.edu	37	22	36055294	36055294	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	36055294	36055294	C	T	SNP	APOL6	ENST00000409652	human	ensembl	74_37	+1	known	missense	c.683	p.A228V	0.055	pfam_ApoL	pfam_ApoL	-	no_errors	APOL6	HGNC	ENSG00000221963				92	0	0	78	7	8.23529
MYH9	0	genome.wustl.edu	37	22	36698665	36698665	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	36698665	36698665	G	A	SNP	MYH9	ENST00000216181	human	ensembl	74_37	-1	known	silent	c.2448	p.C816	1.000	superfamily_P-loop_NTPase	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH9	HGNC	ENSG00000100345				47	0	0	39	11	22
TMPRSS6	0	genome.wustl.edu	37	22	37462911	37462911	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	37462911	37462911	G	A	SNP	TMPRSS6	ENST00000381792	human	ensembl	74_37	-1	known	silent	c.2271	p.R757	0.998	pirsf_Pept_S1A_matriptase-2,pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pirsf_Pept_S1A_matriptase-2,pfam_Peptidase_S1,pfam_LDrepeatLR_classA_rpt,pfam_SEA_dom,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1,prints_Peptidase_S1A,prints_LDrepeatLR_classA_rpt,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1	-	no_errors	TMPRSS6	HGNC	ENSG00000187045				31	0	0	16	6	27.2727
TMPRSS6	0	genome.wustl.edu	37	22	37471264	37471264	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	37471264	37471264	G	T	SNP	TMPRSS6	ENST00000381792	human	ensembl	74_37	-1	known	missense	c.1253	p.T418K	0.006	pirsf_Pept_S1A_matriptase-2,superfamily_CUB_dom,pfscan_CUB_dom	pirsf_Pept_S1A_matriptase-2,pfam_Peptidase_S1,pfam_LDrepeatLR_classA_rpt,pfam_SEA_dom,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1,prints_Peptidase_S1A,prints_LDrepeatLR_classA_rpt,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1	-	no_errors	TMPRSS6	HGNC	ENSG00000187045				49	0	0	31	13	29.5455
TRIOBP	0	genome.wustl.edu	37	22	38119860	38119860	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	38119860	38119860	G	A	SNP	TRIOBP	ENST00000406386	human	ensembl	74_37	+1	known	missense	c.1297	p.A433T	0.013	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	TRIOBP	HGNC	ENSG00000100106				112	0	0	86	29	25.2174
DMC1	0	genome.wustl.edu	37	22	38934370	38934370	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	38934370	38934370	G	A	SNP	DMC1	ENST00000216024	human	ensembl	74_37	-1	known	silent	c.705	p.G235	0.855	pfam_DNA_recomb/repair_Rad51_C,pfam_DNA_recomb/repair_RecA,pfam_Circ_KaiC/RadA,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pirsf_DNA_recomb/repair_RecA-like,pfscan_DNA_recomb_RecA/RadB_ATP-bd,tigrfam_DMC1_rcmbase	pfam_DNA_recomb/repair_Rad51_C,pfam_DNA_recomb/repair_RecA,pfam_Circ_KaiC/RadA,superfamily_P-loop_NTPase,superfamily_DNA_repair_Rad51/TF_NusA_a-hlx,smart_AAA+_ATPase,pirsf_DNA_recomb/repair_RecA-like,pfscan_DNA_recomb_RecA/RadB_ATP-bd,pfscan_RecA_monomer-monomer_interface,tigrfam_DMC1_rcmbase	-	no_errors	DMC1	HGNC	ENSG00000100206				56	0	0	45	13	22.4138
SUN2	0	genome.wustl.edu	37	22	39148607	39148607	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	39148607	39148607	C	T	SNP	SUN2	ENST00000216064	human	ensembl	74_37	-1	known	silent	c.27	p.T9	0.007	NULL	pfam_Sad1_UNC_C,superfamily_Galactose-bd-like	-	no_errors	SUN2	HGNC	ENSG00000100242				18	0	0	16	8	33.3333
APOBEC3G	0	genome.wustl.edu	37	22	39482482	39482482	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	39482482	39482482	G	A	SNP	APOBEC3G	ENST00000407997	human	ensembl	74_37	+1	known	missense	c.934	p.A312T	0.872	pfam_APOBEC_N,superfamily_Cytidine_deaminase-like	pfam_APOBEC_N,pfam_APOBEC_C,superfamily_Cytidine_deaminase-like	-	no_errors	APOBEC3G	HGNC	ENSG00000239713				116	0	0	72	27	27.2727
TAB1	0	genome.wustl.edu	37	22	39811575	39811575	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	39811575	39811575	G	T	SNP	TAB1	ENST00000216160	human	ensembl	74_37	+1	known	missense	c.241	p.A81S	1.000	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	-	no_errors	TAB1	HGNC	ENSG00000100324				83	0	0	40	19	32.2034
MGAT3	0	genome.wustl.edu	37	22	39883366	39883366	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	39883366	39883366	G	A	SNP	MGAT3	ENST00000341184	human	ensembl	74_37	+1	known	missense	c.14	p.R5H	1.000	NULL	pfam_Glyco_trans_17	-	no_errors	MGAT3	HGNC	ENSG00000128268				170	0	0	117	9	7.14286
CACNA1I	0	genome.wustl.edu	37	22	40056386	40056386	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	40056386	40056386	G	A	SNP	CACNA1I	ENST00000336649	human	ensembl	74_37	+1	known	missense	c.2660	p.S887N	1.000	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1I	HGNC	ENSG00000100346				36	0	0	30	16	34.7826
GRAP2	0	genome.wustl.edu	37	22	40365422	40365422	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	40365422	40365422	G	T	SNP	GRAP2	ENST00000344138	human	ensembl	74_37	+1	known	missense	c.698	p.R233L	0.908	NULL	pfam_SH3_domain,pfam_SH2,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,pfscan_SH2,pfscan_SH3_domain,prints_SH2,prints_SH3_domain	-	no_errors	GRAP2	HGNC	ENSG00000100351				100	0	0	81	9	10
DNAJB7	0	genome.wustl.edu	37	22	41257568	41257568	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	41257568	41257568	T	A	SNP	DNAJB7	ENST00000307221	human	ensembl	74_37	-1	known	missense	c.431	p.Y144F	0.000	superfamily_ConA-like_lec_gl_sf	pfam_DnaJ_domain,superfamily_DnaJ_domain,superfamily_ConA-like_lec_gl_sf,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJB7	HGNC	ENSG00000172404				134	1	0.740741	109	6	5.21739
EP300	0	genome.wustl.edu	37	22	41489028	41489028	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	41489028	41489028	A	G	SNP	EP300	ENST00000263253	human	ensembl	74_37	+1	known	missense	c.20	p.E7G	1.000	NULL	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	EP300	HGNC	ENSG00000100393				108	0	0	73	6	7.59494
EP300	0	genome.wustl.edu	37	22	41574331	41574331	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	41574331	41574331	G	T	SNP	EP300	ENST00000263253	human	ensembl	74_37	+1	known	missense	c.6616	p.A2206S	1.000	NULL	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	EP300	HGNC	ENSG00000100393				58	0	0	39	10	20.4082
RANGAP1	0	genome.wustl.edu	37	22	41648913	41648913	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	41648913	41648913	C	T	SNP	RANGAP1	ENST00000356244	human	ensembl	74_37	-1	known	missense	c.1343	p.R448H	0.967	pfam_Ran_GTPase_activating_1_C,superfamily_Ran_GTPase_activating_1_C	pfam_Ran_GTPase_activating_1_C,superfamily_Ran_GTPase_activating_1_C,smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	RANGAP1	HGNC	ENSG00000100401				23	0	0	20	8	28.5714
RANGAP1	0	genome.wustl.edu	37	22	41676993	41676993	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	41676993	41676993	G	A	SNP	RANGAP1	ENST00000356244	human	ensembl	74_37	-1	known	missense	c.56	p.A19V	0.640	NULL	pfam_Ran_GTPase_activating_1_C,superfamily_Ran_GTPase_activating_1_C,smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	RANGAP1	HGNC	ENSG00000100401				60	0	0	39	18	31.5789
PHF5A	0	genome.wustl.edu	37	22	41863526	41863526	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	41863526	41863526	G	A	SNP	PHF5A	ENST00000216252	human	ensembl	74_37	-1	known	missense	c.169	p.R57C	1.000	pfam_PHF5,pirsf_PHF5	pfam_PHF5,pirsf_PHF5	-	no_errors	PHF5A	HGNC	ENSG00000100410				62	0	0	52	9	14.7541
CYP2D6	0	genome.wustl.edu	37	22	42523459	42523459	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	42523459	42523459	C	T	SNP	CYP2D6	ENST00000360608	human	ensembl	74_37	-1	known	missense	c.1163	p.R388H	0.983	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_B	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2D-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2D6	HGNC	ENSG00000100197				24	0	0	27	3	10
TCF20	0	genome.wustl.edu	37	22	42609903	42609903	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	42609903	42609903	A	G	SNP	TCF20	ENST00000359486	human	ensembl	74_37	-1	known	missense	c.1409	p.V470A	1.000	NULL	smart_Znf_PHD	-	no_errors	TCF20	HGNC	ENSG00000100207				175	0	0	102	30	22.7273
TCF20	0	genome.wustl.edu	37	22	42610103	42610103	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	42610103	42610103	C	T	SNP	TCF20	ENST00000359486	human	ensembl	74_37	-1	known	silent	c.1209	p.V403	1.000	NULL	smart_Znf_PHD	-	no_errors	TCF20	HGNC	ENSG00000100207				132	0	0	75	24	24.2424
PACSIN2	0	genome.wustl.edu	37	22	43267373	43267373	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	43267373	43267373	G	A	SNP	PACSIN2	ENST00000263246	human	ensembl	74_37	-1	known	missense	c.1451	p.A484V	0.953	superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	pfam_FCH_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_FCH_dom,smart_SH3_domain,pfscan_FCH_dom,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	PACSIN2	HGNC	ENSG00000100266				40	0	0	38	8	17.3913
TTLL1	0	genome.wustl.edu	37	22	43442572	43442572	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	43442572	43442572	G	A	SNP	TTLL1	ENST00000266254	human	ensembl	74_37	-1	known	missense	c.986	p.A329V	0.996	pfam_TTL/TTLL_fam	pfam_TTL/TTLL_fam	-	no_errors	TTLL1	HGNC	ENSG00000100271				86	0	0	86	5	5.49451
PARVB	0	genome.wustl.edu	37	22	44543773	44543773	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	44543773	44543773	G	A	SNP	PARVB	ENST00000406477	human	ensembl	74_37	+1	known	missense	c.844	p.A282T	1.000	superfamily_CH-domain	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	PARVB	HGNC	ENSG00000188677				45	0	0	23	7	23.3333
FAM118A	0	genome.wustl.edu	37	22	45726536	45726536	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	45726536	45726536	G	A	SNP	FAM118A	ENST00000216214	human	ensembl	74_37	+1	known	missense	c.575	p.G192D	1.000	superfamily_RNaseH-like_dom	superfamily_RNaseH-like_dom	-	no_errors	FAM118A	HGNC	ENSG00000100376				60	0	0	38	13	25.4902
FBLN1	0	genome.wustl.edu	37	22	45938087	45938087	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	45938087	45938087	C	T	SNP	FBLN1	ENST00000327858	human	ensembl	74_37	+1	known	silent	c.1119	p.C373	0.001	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_Fibulin-1,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_Anaphylatoxin/fibulin,smart_Anaphylatoxin/fibulin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_Fibulin-1,pfscan_Anaphylatoxin/fibulin,pfscan_EG-like_dom	-	no_errors	FBLN1	HGNC	ENSG00000077942				113	0	0	46	27	36.9863
PPARA	0	genome.wustl.edu	37	22	46627780	46627780	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	46627780	46627780	C	T	SNP	PPARA	ENST00000262735	human	ensembl	74_37	+1	known	missense	c.803	p.A268V	0.995	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_1Cnucl_rcpt_A,prints_1Cnucl_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	PPARA	HGNC	ENSG00000186951				31	0	0	25	9	26.4706
PKDREJ	0	genome.wustl.edu	37	22	46655302	46655302	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	46655302	46655302	C	T	SNP	PKDREJ	ENST00000253255	human	ensembl	74_37	-1	known	silent	c.3918	p.S1306	0.000	pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom	pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_PLAT/LH2_dom,pfam_Ion_trans_dom,superfamily_Lipase_LipOase,smart_GPS_dom,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like,prints_PKD_2	-	no_errors	PKDREJ	HGNC	ENSG00000130943				123	0	0	77	34	30.6306
PKDREJ	0	genome.wustl.edu	37	22	46658466	46658466	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	46658466	46658466	C	T	SNP	PKDREJ	ENST00000253255	human	ensembl	74_37	-1	known	missense	c.754	p.A252T	0.000	pfam_PKD/REJ-like,pfscan_REJ-like	pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_PLAT/LH2_dom,pfam_Ion_trans_dom,superfamily_Lipase_LipOase,smart_GPS_dom,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like,prints_PKD_2	-	no_errors	PKDREJ	HGNC	ENSG00000130943				28	0	0	12	8	40
GTSE1	0	genome.wustl.edu	37	22	46712231	46712231	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	46712231	46712231	C	T	SNP	GTSE1	ENST00000454366	human	ensembl	74_37	+1	known	nonsense	c.1354	p.R452*	0.063	NULL	NULL	-	no_errors	GTSE1	HGNC	ENSG00000075218				198	0	0	181	14	7.17949
GRAMD4	0	genome.wustl.edu	37	22	47070572	47070572	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	47070572	47070572	G	A	SNP	GRAMD4	ENST00000361034	human	ensembl	74_37	+1	known	missense	c.1403	p.R468H	1.000	pfam_GRAM,smart_GRAM	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD4	HGNC	ENSG00000075240				33	0	0	37	6	13.9535
GRAMD4	0	genome.wustl.edu	37	22	47070595	47070595	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	47070595	47070595	C	T	SNP	GRAMD4	ENST00000361034	human	ensembl	74_37	+1	known	missense	c.1426	p.R476W	1.000	pfam_GRAM,smart_GRAM	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD4	HGNC	ENSG00000075240				46	0	0	40	10	20
TBC1D22A	0	genome.wustl.edu	37	22	47290699	47290699	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	47290699	47290699	G	A	SNP	TBC1D22A	ENST00000337137	human	ensembl	74_37	+1	known	missense	c.857	p.R286H	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D22A	HGNC	ENSG00000054611				94	0	0	86	8	8.51064
FAM19A5	0	genome.wustl.edu	37	22	49103572	49103572	+	Silent	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	49103572	49103572	T	C	SNP	FAM19A5	ENST00000358295	human	ensembl	74_37	+1	known	silent	c.285	p.C95	0.936	pfam_Chemokine-like_FAM19A2	pfam_Chemokine-like_FAM19A2	-	no_errors	FAM19A5	HGNC	ENSG00000219438				60	0	0	30	7	18.9189
ZBED4	0	genome.wustl.edu	37	22	50277562	50277562	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	50277562	50277562	C	T	SNP	ZBED4	ENST00000216268	human	ensembl	74_37	+1	known	silent	c.252	p.G84	0.000	NULL	pfam_Znf_BED_prd,pfam_HATC_dom_C,superfamily_RNaseH-like_dom,smart_Znf_BED_prd,pfscan_Znf_BED_prd	-	no_errors	ZBED4	HGNC	ENSG00000100426				97	0	0	46	22	32.3529
TTLL8	0	genome.wustl.edu	37	22	50470406	50470406	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	50470406	50470406	G	A	SNP	TTLL8	ENST00000266182	human	ensembl	74_37	-1	known	silent	c.1416	p.G472	0.000	pfam_TTL/TTLL_fam	pfam_TTL/TTLL_fam	-	no_errors	TTLL8	HGNC	ENSG00000138892				20	0	0	15	4	21.0526
TRABD	0	genome.wustl.edu	37	22	50636522	50636522	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	50636522	50636522	T	C	SNP	TRABD	ENST00000303434	human	ensembl	74_37	+1	known	missense	c.863	p.V288A	0.991	pfam_Pheromone_shutdown_TraB	pfam_Pheromone_shutdown_TraB	-	no_errors	TRABD	HGNC	ENSG00000170638				15	0	0	9	5	35.7143
PLXNB2	0	genome.wustl.edu	37	22	50728515	50728515	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	50728515	50728515	C	T	SNP	PLXNB2	ENST00000359337	human	ensembl	74_37	-1	known	missense	c.499	p.V167M	0.667	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNB2	HGNC	ENSG00000196576				54	0	0	26	11	29.7297
FANCD2	0	genome.wustl.edu	37	3	10084330	10084330	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	10084330	10084330	G	A	SNP	FANCD2	ENST00000287647	human	ensembl	74_37	+1	known	missense	c.871	p.A291T	0.040	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FANCD2	HGNC	ENSG00000144554				150	0	0	105	24	18.6047
NXPE3	0	genome.wustl.edu	37	3	101520245	101520245	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	101520245	101520245	G	A	SNP	NXPE3	ENST00000273347	human	ensembl	74_37	+1	known	missense	c.260	p.R87Q	0.888	pfam_NXPH/NXPE	pfam_NXPH/NXPE,superfamily_Ig_E-set	-	no_errors	NXPE3	HGNC	ENSG00000144815				90	0	0	56	22	28.2051
ALCAM	0	genome.wustl.edu	37	3	105243139	105243139	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	105243139	105243139	C	T	SNP	ALCAM	ENST00000306107	human	ensembl	74_37	+1	known	missense	c.181	p.P61S	0.616	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr	pfam_CD80_C2-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	ALCAM	HGNC	ENSG00000170017				45	0	0	32	11	25.5814
CBLB	0	genome.wustl.edu	37	3	105400357	105400357	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	105400357	105400357	C	T	SNP	CBLB	ENST00000264122	human	ensembl	74_37	-1	known	silent	c.2394	p.T798	1.000	NULL	pfam_Adaptor_Cbl_N_hlx,pfam_Adaptor_Cbl_SH2-like,pfam_Adaptor_Cbl_EF_hand-like,pfam_Znf_C3HC4_RING-type,pfam_UBA/Ts_N,superfamily_Adaptor_Cbl_N_hlx,superfamily_UBA-like,smart_Znf_RING,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_RING	-	no_errors	CBLB	HGNC	ENSG00000114423				90	0	0	66	7	9.58904
CBLB	0	genome.wustl.edu	37	3	105404299	105404299	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	105404299	105404299	G	T	SNP	CBLB	ENST00000264122	human	ensembl	74_37	-1	known	missense	c.2066	p.P689Q	1.000	NULL	pfam_Adaptor_Cbl_N_hlx,pfam_Adaptor_Cbl_SH2-like,pfam_Adaptor_Cbl_EF_hand-like,pfam_Znf_C3HC4_RING-type,pfam_UBA/Ts_N,superfamily_Adaptor_Cbl_N_hlx,superfamily_UBA-like,smart_Znf_RING,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_RING	-	no_errors	CBLB	HGNC	ENSG00000114423				59	0	0	43	6	12.2449
HHLA2	0	genome.wustl.edu	37	3	108076864	108076864	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	108076864	108076864	C	T	SNP	HHLA2	ENST00000357759	human	ensembl	74_37	+1	known	nonsense	c.859	p.R287*	0.000	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	HHLA2	HGNC	ENSG00000114455				221	0	0	153	39	20.3125
KIAA1524	0	genome.wustl.edu	37	3	108276166	108276166	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	108276166	108276166	C	T	SNP	KIAA1524	ENST00000295746	human	ensembl	74_37	-1	known	silent	c.2109	p.A703	0.984	NULL	superfamily_ARM-type_fold	-	no_errors	KIAA1524	HGNC	ENSG00000163507				83	0	0	65	7	9.72222
DPPA2	0	genome.wustl.edu	37	3	109023460	109023460	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	109023460	109023460	A	G	SNP	DPPA2	ENST00000478945	human	ensembl	74_37	-1	known	missense	c.716	p.V239A	0.989	NULL	pfscan_SAP_dom	-	no_errors	DPPA2	HGNC	ENSG00000163530				90	0	0	67	26	27.957
SLC6A1	0	genome.wustl.edu	37	3	11067198	11067198	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	11067198	11067198	A	G	SNP	SLC6A1	ENST00000287766	human	ensembl	74_37	+1	known	missense	c.778	p.T260A	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_GABA_GAT1,pfscan_Na/ntran_symport	-	no_errors	SLC6A1	HGNC	ENSG00000157103				48	0	0	32	7	17.9487
PHLDB2	0	genome.wustl.edu	37	3	111632332	111632332	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	111632332	111632332	G	A	SNP	PHLDB2	ENST00000393925	human	ensembl	74_37	+1	known	missense	c.1502	p.S501N	0.020	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB2	HGNC	ENSG00000144824				130	0	0	97	27	21.7742
C3orf52	0	genome.wustl.edu	37	3	111828413	111828413	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	111828413	111828413	G	A	SNP	C3orf52	ENST00000264848	human	ensembl	74_37	+1	known	silent	c.420	p.S140	0.053	NULL	NULL	-	no_errors	C3orf52	HGNC	ENSG00000114529				29	0	0	20	11	35.4839
CCDC80	0	genome.wustl.edu	37	3	112337891	112337891	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	112337891	112337891	C	A	SNP	CCDC80	ENST00000206423	human	ensembl	74_37	-1	known	missense	c.2096	p.S699I	0.900	NULL	NULL	-	no_errors	CCDC80	HGNC	ENSG00000091986				72	0	0	57	4	6.55738
BOC	0	genome.wustl.edu	37	3	113005615	113005615	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	113005615	113005615	C	T	SNP	BOC	ENST00000273395	human	ensembl	74_37	+1	known	missense	c.3254	p.P1085L	0.972	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	BOC	HGNC	ENSG00000144857				148	0	0	129	13	9.15493
WDR52	0	genome.wustl.edu	37	3	113146042	113146042	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	113146042	113146042	C	T	SNP	WDR52	ENST00000393845	human	ensembl	74_37	-1	known	missense	c.245	p.S82N	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR52	HGNC	ENSG00000206530				117	0	0	80	32	28.5714
KIAA2018	0	genome.wustl.edu	37	3	113377816	113377816	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	113377816	113377816	C	T	SNP	KIAA2018	ENST00000316407	human	ensembl	74_37	-1	known	missense	c.2713	p.A905T	0.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	KIAA2018	HGNC	ENSG00000176542				177	0	0	150	9	5.66038
ATP6V1A	0	genome.wustl.edu	37	3	113503074	113503074	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	113503074	113503074	G	A	SNP	ATP6V1A	ENST00000273398	human	ensembl	74_37	+1	known	missense	c.215	p.G72D	1.000	pfam_ATPase_F1_a/bsu_N,superfamily_ATPase_F1_a/bsu_N,tigrfam_ATPase_V1-cplx_asu	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,pfam_ATPase_F1/V1/A1-cplx_a/bsu_C,pfam_ATPase_F1_a/bsu_N,superfamily_P-loop_NTPase,superfamily_ATPase_F1/V1/A1-cplx_a/bsu_C,superfamily_ATPase_F1_a/bsu_N,tigrfam_ATPase_V1-cplx_asu	-	no_errors	ATP6V1A	HGNC	ENSG00000114573				90	0	0	65	16	19.7531
ZDHHC23	0	genome.wustl.edu	37	3	113673204	113673204	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	113673204	113673204	G	A	SNP	ZDHHC23	ENST00000478793	human	ensembl	74_37	+1	known	nonsense	c.819	p.W273*	1.000	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC23	HGNC	ENSG00000184307				27	0	0	20	5	20
ATG7	0	genome.wustl.edu	37	3	11372822	11372822	+	Silent	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	11372822	11372822	T	C	SNP	ATG7	ENST00000354449	human	ensembl	74_37	+1	known	silent	c.687	p.I229	0.991	tigrfam_Atg7	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_Atg7	-	no_errors	ATG7	HGNC	ENSG00000197548				165	0	0	127	48	27.4286
DRD3	0	genome.wustl.edu	37	3	113850099	113850099	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	113850099	113850099	G	A	SNP	DRD3	ENST00000383673	human	ensembl	74_37	-1	known	missense	c.872	p.A291V	0.998	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Dopamine_D3_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Dopamine_D3_rcpt,prints_GPCR_Rhodpsn,prints_Dopamine_rcpt	-	no_errors	DRD3	HGNC	ENSG00000151577				178	0	0	134	32	19.2771
ZNF80	0	genome.wustl.edu	37	3	113955754	113955754	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	113955754	113955754	G	A	SNP	ZNF80	ENST00000308095	human	ensembl	74_37	-1	known	silent	c.168	p.S56	0.158	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF80	HGNC	ENSG00000174255				54	0	0	49	4	7.54717
VGLL4	0	genome.wustl.edu	37	3	11606426	11606426	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	11606426	11606426	C	T	SNP	VGLL4	ENST00000430365	human	ensembl	74_37	-1	known	missense	c.340	p.A114T	0.830	NULL	smart_TDU_repeat	-	no_errors	VGLL4	HGNC	ENSG00000144560				10	0	0	10	7	41.1765
VGLL4	0	genome.wustl.edu	37	3	11643341	11643341	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	11643341	11643341	C	T	SNP	VGLL4	ENST00000430365	human	ensembl	74_37	-1	known	missense	c.238	p.V80I	1.000	NULL	smart_TDU_repeat	-	no_errors	VGLL4	HGNC	ENSG00000144560				158	0	0	93	25	21.1864
B4GALT4	0	genome.wustl.edu	37	3	118937520	118937520	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	118937520	118937520	G	A	SNP	B4GALT4	ENST00000359213	human	ensembl	74_37	-1	known	silent	c.774	p.G258	0.999	pfam_Galactosyl_T_C,prints_Galactosyl_T	pfam_Galactosyl_T_C,prints_Galactosyl_T	-	no_errors	B4GALT4	HGNC	ENSG00000121578				137	0	0	105	7	6.25
ARHGAP31	0	genome.wustl.edu	37	3	119121090	119121090	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	119121090	119121090	C	T	SNP	ARHGAP31	ENST00000264245	human	ensembl	74_37	+1	known	silent	c.1491	p.R497	0.007	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP31	HGNC	ENSG00000031081				80	0	0	67	24	26.3736
TIMMDC1	0	genome.wustl.edu	37	3	119217590	119217590	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	119217590	119217590	C	T	SNP	TIMMDC1	ENST00000494664	human	ensembl	74_37	+1	known	missense	c.10	p.P4S	0.994	NULL	pfam_Tim17/Tim22/Tim23/PMP24	-	no_errors	TIMMDC1	HGNC	ENSG00000113845				109	0	0	75	5	6.25
POPDC2	0	genome.wustl.edu	37	3	119379244	119379244	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	119379244	119379244	G	A	SNP	POPDC2	ENST00000341124	human	ensembl	74_37	-1	known	silent	c.27	p.G9	1.000	NULL	pfam_Popeye_prot,superfamily_cNMP-bd-like	-	no_errors	POPDC2	HGNC	ENSG00000121577				37	0	0	35	4	10.2564
MAATS1	0	genome.wustl.edu	37	3	119434422	119434422	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	119434422	119434422	A	G	SNP	MAATS1	ENST00000273390	human	ensembl	74_37	+1	known	missense	c.514	p.T172A	0.000	NULL	superfamily_S-AdoMet_deCO2ase_core	-	no_errors	MAATS1	HGNC	ENSG00000183833				194	0	0	131	50	27.6243
STXBP5L	0	genome.wustl.edu	37	3	120957879	120957879	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	120957879	120957879	G	A	SNP	STXBP5L	ENST00000273666	human	ensembl	74_37	+1	known	missense	c.1246	p.A416T	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_LLGL2,pfam_WD40_repeat,pfam_Lgl_C_dom,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,pfscan_Synaptobrevin,prints_Lethal2_giant	-	no_errors	STXBP5L	HGNC	ENSG00000145087				56	0	0	51	4	7.27273
POLQ	0	genome.wustl.edu	37	3	121228903	121228903	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	121228903	121228903	G	A	SNP	POLQ	ENST00000264233	human	ensembl	74_37	-1	known	missense	c.1799	p.A600V	0.015	NULL	pfam_DNA-dir_DNA_pol_A_palm_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_RNaseH-like_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_DNA-dir_DNA_pol_A_palm_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_DNA_polymerase_A	-	no_errors	POLQ	HGNC	ENSG00000051341				125	0	0	109	9	7.62712
GOLGB1	0	genome.wustl.edu	37	3	121414107	121414107	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	121414107	121414107	C	T	SNP	GOLGB1	ENST00000340645	human	ensembl	74_37	-1	known	missense	c.5248	p.D1750N	0.000	smart_Leu_zip_homeo	superfamily_Prefoldin,superfamily_STAT_TF_coiled-coil,smart_Leu_zip_homeo	-	no_errors	GOLGB1	HGNC	ENSG00000173230				124	0	0	104	10	8.77193
GOLGB1	0	genome.wustl.edu	37	3	121417211	121417211	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	121417211	121417211	G	A	SNP	GOLGB1	ENST00000340645	human	ensembl	74_37	-1	known	missense	c.2144	p.A715V	0.574	NULL	superfamily_Prefoldin,superfamily_STAT_TF_coiled-coil,smart_Leu_zip_homeo	-	no_errors	GOLGB1	HGNC	ENSG00000173230				84	0	0	45	18	28.5714
CASR	0	genome.wustl.edu	37	3	122002869	122002869	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	122002869	122002869	C	T	SNP	CASR	ENST00000498619	human	ensembl	74_37	+1	known	missense	c.2098	p.L700F	1.000	pfam_GPCR_3_C,pfscan_GPCR_3_C,prints_GPCR_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,superfamily_Growth_fac_rcpt_N_dom,pfscan_GPCR_3_C,prints_GPCR_3	-	no_errors	CASR	HGNC	ENSG00000036828				64	0	0	48	12	20
SEMA5B	0	genome.wustl.edu	37	3	122632510	122632510	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	122632510	122632510	C	T	SNP	SEMA5B	ENST00000451055	human	ensembl	74_37	-1	known	silent	c.2313	p.T771	0.947	pfam_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Semap_dom,pfam_Thrombospondin_1_rpt,superfamily_Semap_dom,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Thrombospondin_1_rpt,pfscan_Semap_dom,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5B	HGNC	ENSG00000082684				21	0	0	6	3	33.3333
MYLK	0	genome.wustl.edu	37	3	123471267	123471267	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	123471267	123471267	G	A	SNP	MYLK	ENST00000360304	human	ensembl	74_37	-1	known	missense	c.284	p.A95V	0.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	MYLK	HGNC	ENSG00000065534				70	0	0	52	5	8.77193
CCDC14	0	genome.wustl.edu	37	3	123633803	123633803	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	123633803	123633803	G	A	SNP	CCDC14	ENST00000488653	human	ensembl	74_37	-1	known	silent	c.2685	p.G895	0.072	NULL	NULL	-	no_errors	CCDC14	HGNC	ENSG00000175455				80	0	0	81	7	7.95455
OSBPL11	0	genome.wustl.edu	37	3	125271044	125271044	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	125271044	125271044	G	A	SNP	OSBPL11	ENST00000296220	human	ensembl	74_37	-1	known	silent	c.1635	p.G545	0.247	pfam_Oxysterol-bd	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL11	HGNC	ENSG00000144909				105	0	0	76	21	21.6495
TSEN2	0	genome.wustl.edu	37	3	12544798	12544798	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	12544798	12544798	C	T	SNP	TSEN2	ENST00000284995	human	ensembl	74_37	+1	known	missense	c.346	p.R116C	0.043	pirsf_tRNA_splic_SEN2	pfam_tRNA_intron_Endonuc_cat-like,pfam_tRNA_intron_Endonuc_N,superfamily_tRNA_intron_Endonuc_cat-like,pirsf_tRNA_splic_SEN2	-	no_errors	TSEN2	HGNC	ENSG00000154743				97	0	0	62	18	22.5
TSEN2	0	genome.wustl.edu	37	3	12570415	12570415	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	12570415	12570415	C	T	SNP	TSEN2	ENST00000284995	human	ensembl	74_37	+1	known	silent	c.1128	p.Y376	1.000	pfam_tRNA_intron_Endonuc_cat-like,superfamily_tRNA_intron_Endonuc_cat-like,pirsf_tRNA_splic_SEN2	pfam_tRNA_intron_Endonuc_cat-like,pfam_tRNA_intron_Endonuc_N,superfamily_tRNA_intron_Endonuc_cat-like,pirsf_tRNA_splic_SEN2	-	no_errors	TSEN2	HGNC	ENSG00000154743				109	0	0	80	9	10.1124
CCDC37	0	genome.wustl.edu	37	3	126153218	126153218	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	126153218	126153218	G	A	SNP	CCDC37	ENST00000393425	human	ensembl	74_37	+1	known	missense	c.1625	p.R542H	0.477	NULL	superfamily_SuperAg_toxin_C	-	no_errors	CCDC37	HGNC	ENSG00000163885				33	0	0	15	4	21.0526
RAF1	0	genome.wustl.edu	37	3	12647737	12647737	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	12647737	12647737	G	A	SNP	RAF1	ENST00000442415	human	ensembl	74_37	-1	known	missense	c.643	p.R215C	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Raf-like_ras-bd,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,smart_Raf-like_ras-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Raf-like_ras-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	RAF1	HGNC	ENSG00000132155				76	0	0	45	22	32.8358
PLXNA1	0	genome.wustl.edu	37	3	126708525	126708525	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	126708525	126708525	G	A	SNP	PLXNA1	ENST00000393409	human	ensembl	74_37	+1	known	silent	c.1089	p.R363	0.888	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA1	HGNC	ENSG00000114554				114	0	0	72	6	7.69231
PLXNA1	0	genome.wustl.edu	37	3	126733356	126733356	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	126733356	126733356	G	A	SNP	PLXNA1	ENST00000393409	human	ensembl	74_37	+1	known	silent	c.2640	p.T880	0.177	pfam_IPT,superfamily_Ig_E-set,smart_IPT	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA1	HGNC	ENSG00000114554				17	0	0	13	4	23.5294
PLXNA1	0	genome.wustl.edu	37	3	126733466	126733466	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	126733466	126733466	C	T	SNP	PLXNA1	ENST00000393409	human	ensembl	74_37	+1	known	missense	c.2750	p.A917V	1.000	pfam_IPT,superfamily_Ig_E-set,smart_IPT	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA1	HGNC	ENSG00000114554				33	0	0	25	6	19.3548
PLXNA1	0	genome.wustl.edu	37	3	126733645	126733645	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	126733645	126733645	G	A	SNP	PLXNA1	ENST00000393409	human	ensembl	74_37	+1	known	missense	c.2848	p.A950T	0.992	pfam_IPT,superfamily_Ig_E-set,smart_IPT	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA1	HGNC	ENSG00000114554				26	0	0	13	9	40.9091
MCM2	0	genome.wustl.edu	37	3	127323952	127323952	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	127323952	127323952	G	A	SNP	MCM2	ENST00000265056	human	ensembl	74_37	+1	known	missense	c.626	p.S209N	1.000	superfamily_NA-bd_OB-fold	pfam_MCM_DNA-dep_ATPase,pfam_MCM2,pfam_Mg_chelatse_chII,pfam_ATPase_AAA-3,pfam_ATPase_dyneun-rel_AAA,superfamily_NA-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM2,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM2	HGNC	ENSG00000073111				118	0	0	96	8	7.69231
MCM2	0	genome.wustl.edu	37	3	127340010	127340010	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	127340010	127340010	G	A	SNP	MCM2	ENST00000265056	human	ensembl	74_37	+1	known	missense	c.2543	p.R848H	1.000	NULL	pfam_MCM_DNA-dep_ATPase,pfam_MCM2,pfam_Mg_chelatse_chII,pfam_ATPase_AAA-3,pfam_ATPase_dyneun-rel_AAA,superfamily_NA-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM2,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM2	HGNC	ENSG00000073111				58	0	0	43	19	30.6452
ABTB1	0	genome.wustl.edu	37	3	127396374	127396374	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	127396374	127396374	C	T	SNP	ABTB1	ENST00000232744	human	ensembl	74_37	+1	known	nonsense	c.829	p.R277*	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,pfam_Ankyrin_rpt,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like	-	no_errors	ABTB1	HGNC	ENSG00000114626				58	0	0	35	12	25.5319
COPG1	0	genome.wustl.edu	37	3	128990627	128990627	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	128990627	128990627	C	T	SNP	COPG1	ENST00000314797	human	ensembl	74_37	+1	known	missense	c.1861	p.P621S	1.000	pfam_Coatomer_gsu_app_Ig-like-sub,superfamily_Coatomer/clathrin_app_Ig-like,pirsf_Coatomer_gsu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Coatomer_gsu_app_Ig-like-sub,superfamily_ARM-type_fold,superfamily_Coatomer/clathrin_app_Ig-like,superfamily_Coatomer/calthrin_app_sub_C,pirsf_Coatomer_gsu	-	no_errors	COPG1	HGNC	ENSG00000181789				45	0	0	33	13	28.2609
HMCES	0	genome.wustl.edu	37	3	129009635	129009635	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	129009635	129009635	C	T	SNP	HMCES	ENST00000383463	human	ensembl	74_37	+1	known	silent	c.441	p.I147	0.986	pfam_DUF159,superfamily_DUF159	pfam_DUF159,superfamily_DUF159	-	no_errors	HMCES	HGNC	ENSG00000183624				90	0	0	108	10	8.47458
IFT122	0	genome.wustl.edu	37	3	129238561	129238561	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	129238561	129238561	C	A	SNP	IFT122	ENST00000296266	human	ensembl	74_37	+1	known	missense	c.3775	p.P1259T	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	IFT122	HGNC	ENSG00000163913				103	0	0	77	31	28.7037
ATP2C1	0	genome.wustl.edu	37	3	130716497	130716497	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	130716497	130716497	G	A	SNP	ATP2C1	ENST00000393221	human	ensembl	74_37	+1	known	missense	c.2393	p.R798H	1.000	pfam_ATPase_P-typ_cation-transptr_C,tigrfam_ATPase_P-typ_Ca-transp_PMR1	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_PMR1,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2C1	HGNC	ENSG00000017260				128	0	0	83	28	25.2252
DNAJC13	0	genome.wustl.edu	37	3	132207227	132207227	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	132207227	132207227	G	A	SNP	DNAJC13	ENST00000260818	human	ensembl	74_37	+1	known	missense	c.3353	p.R1118H	1.000	superfamily_ARM-type_fold	pfam_DnaJ_domain,superfamily_ARM-type_fold,superfamily_GYF,smart_DnaJ_domain,pfscan_DnaJ_domain	-	no_errors	DNAJC13	HGNC	ENSG00000138246				72	0	0	77	5	6.09756
NPHP3	0	genome.wustl.edu	37	3	132407734	132407734	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	132407734	132407734	G	A	SNP	NPHP3	ENST00000337331	human	ensembl	74_37	-1	known	missense	c.2885	p.A962V	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,pfam_TPR-3,superfamily_P-loop_NTPase,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	NPHP3	HGNC	ENSG00000113971				61	0	0	43	9	17.3077
BFSP2	0	genome.wustl.edu	37	3	133194042	133194042	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	133194042	133194042	C	T	SNP	BFSP2	ENST00000510039	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.299	-	-	-	no_errors	BFSP2	HGNC	ENSG00000170819				8	0	0	4	3	42.8571
TOPBP1	0	genome.wustl.edu	37	3	133347516	133347516	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	133347516	133347516	G	A	SNP	TOPBP1	ENST00000260810	human	ensembl	74_37	-1	known	missense	c.2582	p.T861M	1.000	superfamily_Secretoglobin	pfam_BRCT_dom,superfamily_BRCT_dom,superfamily_Secretoglobin,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TOPBP1	HGNC	ENSG00000163781				21	0	0	19	6	24
TOPBP1	0	genome.wustl.edu	37	3	133358892	133358892	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	133358892	133358892	G	A	SNP	TOPBP1	ENST00000260810	human	ensembl	74_37	-1	known	missense	c.2144	p.A715V	1.000	pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	pfam_BRCT_dom,superfamily_BRCT_dom,superfamily_Secretoglobin,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TOPBP1	HGNC	ENSG00000163781				82	0	0	70	8	10.2564
TOPBP1	0	genome.wustl.edu	37	3	133375669	133375669	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	133375669	133375669	G	A	SNP	TOPBP1	ENST00000260810	human	ensembl	74_37	-1	known	silent	c.396	p.G132	0.958	pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	pfam_BRCT_dom,superfamily_BRCT_dom,superfamily_Secretoglobin,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TOPBP1	HGNC	ENSG00000163781				277	0	0	264	32	10.8108
RAB6B	0	genome.wustl.edu	37	3	133557073	133557073	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	133557073	133557073	G	A	SNP	RAB6B	ENST00000285208	human	ensembl	74_37	-1	known	silent	c.432	p.R144	0.158	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,pfam_SRP_receptor_beta_su,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB6B	HGNC	ENSG00000154917				134	0	0	103	32	23.7037
NUP210	0	genome.wustl.edu	37	3	13381431	13381431	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	13381431	13381431	C	T	SNP	NUP210	ENST00000254508	human	ensembl	74_37	-1	known	missense	c.3394	p.A1132T	0.000	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,smart_Big_2	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,superfamily_Cadherin-like,smart_Big_2	-	no_errors	NUP210	HGNC	ENSG00000132182				98	0	0	73	19	20.6522
AMOTL2	0	genome.wustl.edu	37	3	134090186	134090186	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	134090186	134090186	C	T	SNP	AMOTL2	ENST00000249883	human	ensembl	74_37	-1	known	silent	c.90	p.T30	0.513	NULL	pfam_Angiomotin_C,prints_Angiomotin	-	no_errors	AMOTL2	HGNC	ENSG00000114019				26	0	0	18	6	25
HDAC11	0	genome.wustl.edu	37	3	13546068	13546068	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	13546068	13546068	G	A	SNP	HDAC11	ENST00000295757	human	ensembl	74_37	+1	known	missense	c.929	p.R310H	1.000	pfam_His_deacetylse_dom	pfam_His_deacetylse_dom,prints_His_deacetylse	-	no_errors	HDAC11	HGNC	ENSG00000163517				50	0	0	21	14	40
STAG1	0	genome.wustl.edu	37	3	136287655	136287655	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	136287655	136287655	C	T	SNP	STAG1	ENST00000383202	human	ensembl	74_37	-1	known	missense	c.346	p.A116T	1.000	NULL	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG1	HGNC	ENSG00000118007				45	0	0	41	5	10.8696
MRPS22	0	genome.wustl.edu	37	3	139074577	139074577	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	139074577	139074577	G	A	SNP	MRPS22	ENST00000310776	human	ensembl	74_37	+1	known	missense	c.932	p.G311D	0.973	NULL	pfam_Ribosomal_S22_mit	-	no_errors	MRPS22	HGNC	ENSG00000175110				51	0	0	37	4	9.7561
COPB2	0	genome.wustl.edu	37	3	139080062	139080062	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	139080062	139080062	G	A	SNP	COPB2	ENST00000333188	human	ensembl	74_37	-1	known	missense	c.2071	p.H691Y	1.000	pirsf_COPB2,pfam_Coatomer_WD-assoc_reg	pirsf_COPB2,pfam_Coatomer_WD-assoc_reg,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	COPB2	HGNC	ENSG00000184432				116	0	0	100	7	6.54206
CLSTN2	0	genome.wustl.edu	37	3	140167437	140167437	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	140167437	140167437	C	T	SNP	CLSTN2	ENST00000458420	human	ensembl	74_37	+1	known	silent	c.864	p.C288	0.952	NULL	pfam_Cadherin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CLSTN2	HGNC	ENSG00000158258				146	0	0	113	11	8.87097
TRIM42	0	genome.wustl.edu	37	3	140401502	140401502	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	140401502	140401502	C	T	SNP	TRIM42	ENST00000286349	human	ensembl	74_37	+1	known	silent	c.540	p.T180	0.124	pfscan_Znf_RING	pfam_Znf_B-box,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Znf_B-box,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM42	HGNC	ENSG00000155890				70	0	0	35	18	33.9623
RASA2	0	genome.wustl.edu	37	3	141231095	141231095	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	141231095	141231095	G	A	SNP	RASA2	ENST00000452898	human	ensembl	74_37	+1	known	missense	c.224	p.R75H	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_RasGAP,pfam_C2_dom,pfam_Pleckstrin_homology,pfam_Znf_Btk_motif,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_C2_dom,smart_RasGAP,smart_Pleckstrin_homology,smart_Znf_Btk_motif,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_Znf_Btk_motif,pfscan_RasGAP,prints_Znf_Btk_motif	-	no_errors	RASA2	HGNC	ENSG00000155903				100	0	0	73	25	25.5102
ATR	0	genome.wustl.edu	37	3	142266699	142266699	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	142266699	142266699	C	T	SNP	ATR	ENST00000350721	human	ensembl	74_37	-1	known	silent	c.3225	p.L1075	1.000	superfamily_ARM-type_fold	pfam_PI3/4_kinase_cat_dom,pfam_PIK-rel_kinase_FAT,pfam_UME,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_UME,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_HEAT_type_2,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATR	HGNC	ENSG00000175054				65	0	0	72	5	6.49351
PBX2P1	0	genome.wustl.edu	37	3	142895462	142895462	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	142895462	142895462	C	T	SNP	PBX2P1	ENST00000560287	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.994	-	-	-	no_errors	PBX2P1	HGNC	ENSG00000244171				73	0	0	55	7	11.2903
PBX2P1	0	genome.wustl.edu	37	3	142895615	142895615	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	142895615	142895615	C	T	SNP	PBX2P1	ENST00000560287	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	PBX2P1	HGNC	ENSG00000244171				55	0	0	29	4	12.1212
C3orf20	0	genome.wustl.edu	37	3	14724291	14724291	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	14724291	14724291	G	A	SNP	C3orf20	ENST00000253697	human	ensembl	74_37	+1	known	missense	c.71	p.R24H	0.144	NULL	NULL	-	no_errors	C3orf20	HGNC	ENSG00000131379				141	1	0.704225	114	12	9.52381
C3orf20	0	genome.wustl.edu	37	3	14799160	14799160	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	14799160	14799160	C	T	SNP	C3orf20	ENST00000253697	human	ensembl	74_37	+1	known	silent	c.2223	p.G741	1.000	NULL	NULL	-	no_errors	C3orf20	HGNC	ENSG00000131379				13	0	0	3	3	50
CPB1	0	genome.wustl.edu	37	3	148558742	148558742	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	148558742	148558742	C	T	SNP	CPB1	ENST00000282957	human	ensembl	74_37	+1	known	missense	c.454	p.R152C	0.992	pfam_Peptidase_M14,smart_Peptidase_M14,prints_Peptidase_M14	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPB1	HGNC	ENSG00000153002				139	0	0	123	15	10.8696
GYG1	0	genome.wustl.edu	37	3	148741973	148741973	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	148741973	148741973	C	A	SNP	GYG1	ENST00000345003	human	ensembl	74_37	+1	known	missense	c.742	p.L248M	0.693	NULL	pfam_Glyco_trans_8	-	no_errors	GYG1	HGNC	ENSG00000163754				105	0	0	122	7	5.42636
HLTF	0	genome.wustl.edu	37	3	148781227	148781227	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	148781227	148781227	C	T	SNP	HLTF	ENST00000310053	human	ensembl	74_37	-1	known	missense	c.1151	p.R384H	0.715	superfamily_P-loop_NTPase,smart_Helicase_ATP-bd	pfam_SNF2_N,pfam_HIP116_Rad5p_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_HIP116_Rad5p_N,smart_Helicase_ATP-bd,smart_Znf_RING,smart_Helicase_C,pfscan_Znf_RING,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	HLTF	HGNC	ENSG00000071794				105	0	0	71	15	17.4419
CP	0	genome.wustl.edu	37	3	148904520	148904520	+	Splice_Site	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	148904520	148904520	C	T	SNP	CP	ENST00000264613	human	ensembl	74_37	-1	known	splice_site	c.1865-1	e11-1	1.000	-	-	-	no_errors	CP	HGNC	ENSG00000047457				53	0	0	51	4	7.27273
SIAH2	0	genome.wustl.edu	37	3	150460413	150460413	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	150460413	150460413	G	A	SNP	SIAH2	ENST00000312960	human	ensembl	74_37	-1	known	missense	c.490	p.R164C	1.000	pfam_7-in-absentia-prot_TRAF-dom,superfamily_TRAF-like,pfscan_Znf_SIAH	pfam_7-in-absentia-prot_TRAF-dom,superfamily_TRAF-like,pfscan_Znf_RING,pfscan_Znf_SIAH	-	no_errors	SIAH2	HGNC	ENSG00000181788				79	0	0	56	7	11.1111
MED12L	0	genome.wustl.edu	37	3	150877785	150877785	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	150877785	150877785	G	A	SNP	MED12L	ENST00000474524	human	ensembl	74_37	+1	known	missense	c.1004	p.G335D	0.241	pfam_Mediator_Med12_LCEWAV	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12,pfam_Mediator_Med12_catenin-bd	-	no_errors	MED12L	HGNC	ENSG00000144893				92	0	0	72	5	6.49351
ZFYVE20	0	genome.wustl.edu	37	3	15116081	15116081	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	15116081	15116081	C	A	SNP	ZFYVE20	ENST00000253699	human	ensembl	74_37	-1	known	missense	c.1563	p.Q521H	1.000	NULL	pfam_Rbsn,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Znf_C2H2	-	no_errors	ZFYVE20	HGNC	ENSG00000131381				100	0	0	76	21	21.6495
IGSF10	0	genome.wustl.edu	37	3	151176330	151176330	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	151176330	151176330	C	T	SNP	IGSF10	ENST00000282466	human	ensembl	74_37	-1	known	silent	c.168	p.P56	0.000	smart_LRR-contain_N	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	IGSF10	HGNC	ENSG00000152580				55	0	0	29	11	27.5
CAPN7	0	genome.wustl.edu	37	3	15269407	15269407	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	15269407	15269407	C	T	SNP	CAPN7	ENST00000253693	human	ensembl	74_37	+1	known	nonsense	c.787	p.R263*	1.000	pfam_Peptidase_C2_calpain_cat,smart_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease,pfscan_Peptidase_C2_calpain_cat	pfam_Peptidase_C2_calpain_cat,pfam_MIT,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_MIT,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,prints_Calpain_cysteine_protease,pfscan_Peptidase_C2_calpain_cat	-	no_errors	CAPN7	HGNC	ENSG00000131375				73	0	0	37	17	31.4815
SH3BP5-AS1	0	genome.wustl.edu	37	3	15298644	15298644	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	15298644	15298644	C	T	SNP	SH3BP5-AS1	ENST00000420195	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.130	-	-	-	no_errors	SH3BP5-AS1	HGNC	ENSG00000224660				70	0	0	63	10	13.6986
ARHGEF26	0	genome.wustl.edu	37	3	153840497	153840497	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	153840497	153840497	G	A	SNP	ARHGEF26	ENST00000356448	human	ensembl	74_37	+1	known	missense	c.716	p.S239N	1.000	NULL	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF26	HGNC	ENSG00000114790				24	0	0	8	4	33.3333
ARHGEF26	0	genome.wustl.edu	37	3	153935682	153935682	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	153935682	153935682	G	A	SNP	ARHGEF26	ENST00000356448	human	ensembl	74_37	+1	known	missense	c.1870	p.A624T	0.999	superfamily_DH-domain	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF26	HGNC	ENSG00000114790				32	0	0	17	9	34.6154
DHX36	0	genome.wustl.edu	37	3	154022736	154022736	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	154022736	154022736	C	T	SNP	DHX36	ENST00000496811	human	ensembl	74_37	-1	known	missense	c.994	p.V332I	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX36	HGNC	ENSG00000174953				66	0	0	52	15	22.3881
GPR149	0	genome.wustl.edu	37	3	154055676	154055676	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	154055676	154055676	C	T	SNP	GPR149	ENST00000389740	human	ensembl	74_37	-1	known	missense	c.2008	p.A670T	1.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	GPR149	HGNC	ENSG00000174948				199	0	0	142	43	23.2432
PLCH1	0	genome.wustl.edu	37	3	155203197	155203197	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	155203197	155203197	C	T	SNP	PLCH1	ENST00000340059	human	ensembl	74_37	-1	known	silent	c.2946	p.S982	0.000	NULL	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_EF_hand_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_EF_hand_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCH1	HGNC	ENSG00000114805				117	0	0	90	7	7.21649
PLCH1	0	genome.wustl.edu	37	3	155215148	155215148	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	155215148	155215148	A	G	SNP	PLCH1	ENST00000340059	human	ensembl	74_37	-1	known	missense	c.1819	p.Y607H	0.997	pfam_PLipase_C_Pinositol-sp_Y,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_Pinositol-sp_Y,pfscan_PLipase_C_Pinositol-sp_Y	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_EF_hand_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_EF_hand_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCH1	HGNC	ENSG00000114805				115	0	0	96	7	6.79612
GMPS	0	genome.wustl.edu	37	3	155639982	155639982	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	155639982	155639982	G	A	SNP	GMPS	ENST00000496455	human	ensembl	74_37	+1	known	missense	c.1325	p.G442D	1.000	NULL	pfam_GATASE,pfam_GMP_synth_C,pfam_Peptidase_C26,pfam_NAD/GMP_synthase,pfam_QueC,pfam_Asn_synthase,pfam_tRNA-specific_2-thiouridylase,tigrfam_GMP_synth_N	-	no_errors	GMPS	HGNC	ENSG00000163655				23	0	0	15	3	16.6667
HACL1	0	genome.wustl.edu	37	3	15609981	15609981	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	15609981	15609981	T	C	SNP	HACL1	ENST00000321169	human	ensembl	74_37	-1	known	missense	c.1208	p.D403G	1.000	pfam_TPP_enzyme-bd_C	pfam_Thiamin_PyroP_enz_TPP-bd_dom,pfam_Thiamin_PyroP_enz_cen_dom,pfam_TPP_enzyme-bd_C,pfam_CO_DH_CoA_synth	-	no_errors	HACL1	HGNC	ENSG00000131373				111	0	0	124	7	5.34351
SSR3	0	genome.wustl.edu	37	3	156272757	156272757	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	156272757	156272757	G	A	SNP	SSR3	ENST00000265044	human	ensembl	74_37	-1	known	missense	c.122	p.A41V	1.000	pfam_TRAP-gamma	pfam_TRAP-gamma	-	no_errors	SSR3	HGNC	ENSG00000114850				24	0	0	19	8	29.6296
TIPARP	0	genome.wustl.edu	37	3	156396186	156396186	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	156396186	156396186	A	C	SNP	TIPARP	ENST00000295924	human	ensembl	74_37	+1	known	missense	c.700	p.T234P	1.000	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	TIPARP	HGNC	ENSG00000163659				132	1	0.75188	128	12	8.57143
RSRC1	0	genome.wustl.edu	37	3	157920883	157920883	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	157920883	157920883	C	T	SNP	RSRC1	ENST00000295930	human	ensembl	74_37	+1	known	missense	c.343	p.R115C	1.000	NULL	NULL	-	no_errors	RSRC1	HGNC	ENSG00000174891				57	0	0	67	4	5.6338
SMC4	0	genome.wustl.edu	37	3	160138560	160138560	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	160138560	160138560	C	T	SNP	SMC4	ENST00000344722	human	ensembl	74_37	+1	known	silent	c.1890	p.D630	0.977	pfam_RecF/RecN/SMC_N,pfam_SMC_hinge,superfamily_P-loop_NTPase,superfamily_SMC_hinge,smart_SMC_hinge	pfam_RecF/RecN/SMC_N,pfam_SMC_hinge,superfamily_P-loop_NTPase,superfamily_SMC_hinge,superfamily_Chemotax_Me-accpt_rcpt_lig-bd,superfamily_Prefoldin,smart_SMC_hinge	-	no_errors	SMC4	HGNC	ENSG00000113810				140	1	0.70922	103	17	14.1667
SI	0	genome.wustl.edu	37	3	164709998	164709998	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	164709998	164709998	G	A	SNP	SI	ENST00000264382	human	ensembl	74_37	-1	known	silent	c.4950	p.Y1650	0.141	pfam_Glyco_hydro_31	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,smart_P_trefoil	-	no_errors	SI	HGNC	ENSG00000090402				203	0	0	128	43	25.1462
SI	0	genome.wustl.edu	37	3	164764719	164764719	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	164764719	164764719	C	T	SNP	SI	ENST00000264382	human	ensembl	74_37	-1	known	silent	c.1797	p.A599	0.400	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,smart_P_trefoil	-	no_errors	SI	HGNC	ENSG00000090402				113	1	0.877193	77	29	27.3585
SLC7A14	0	genome.wustl.edu	37	3	170184883	170184883	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	170184883	170184883	G	A	SNP	SLC7A14	ENST00000231706	human	ensembl	74_37	-1	known	missense	c.2276	p.A759V	1.000	NULL	pfam_AA-permease/SLC12A_dom	-	no_errors	SLC7A14	HGNC	ENSG00000013293				156	0	0	161	13	7.47126
TNIK	0	genome.wustl.edu	37	3	170805172	170805172	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	170805172	170805172	G	A	SNP	TNIK	ENST00000436636	human	ensembl	74_37	-1	known	missense	c.2845	p.R949C	0.995	NULL	pfam_Prot_kinase_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom	-	no_errors	TNIK	HGNC	ENSG00000154310				100	1	0.990099	66	7	9.58904
GHSR	0	genome.wustl.edu	37	3	172166024	172166024	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	172166024	172166024	G	A	SNP	GHSR	ENST00000241256	human	ensembl	74_37	-1	known	silent	c.180	p.G60	0.997	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GHS-R,prints_GPCR_Rhodpsn	-	no_errors	GHSR	HGNC	ENSG00000121853				43	0	0	31	9	22.5
ZNF639	0	genome.wustl.edu	37	3	179051265	179051265	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	179051265	179051265	G	A	SNP	ZNF639	ENST00000326361	human	ensembl	74_37	+1	known	silent	c.513	p.P171	0.959	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF639	HGNC	ENSG00000121864				67	0	0	63	18	22.2222
ZNF639	0	genome.wustl.edu	37	3	179052028	179052028	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	179052028	179052028	T	G	SNP	ZNF639	ENST00000326361	human	ensembl	74_37	+1	known	missense	c.1276	p.L426V	0.977	pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF639	HGNC	ENSG00000121864				90	0	0	58	4	6.45161
USP13	0	genome.wustl.edu	37	3	179437789	179437789	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	179437789	179437789	G	A	SNP	USP13	ENST00000263966	human	ensembl	74_37	+1	known	silent	c.867	p.A289	0.566	pirsf_Ubiquitinyl_hydrolase	pfam_Peptidase_C19/C67,pfam_UBA/Ts_N,pfam_Znf_UBP,superfamily_UBA-like,smart_Znf_UBP,smart_UBA/transl_elong_EF1B_N_euk,pirsf_Ubiquitinyl_hydrolase,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP13	HGNC	ENSG00000058056				115	0	0	69	20	22.4719
CCDC39	0	genome.wustl.edu	37	3	180334111	180334111	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	180334111	180334111	C	T	SNP	CCDC39	ENST00000442201	human	ensembl	74_37	-1	known	missense	c.2627	p.R876H	0.001	NULL	superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	CCDC39	HGNC	ENSG00000145075				79	0	0	39	12	23.5294
FXR1	0	genome.wustl.edu	37	3	180688056	180688056	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	180688056	180688056	C	T	SNP	FXR1	ENST00000357559	human	ensembl	74_37	+1	known	missense	c.1513	p.R505W	1.000	NULL	pfam_Frag_X_MRP_fam,pfam_KH_dom_type_1,pfam_Agenet-like_dom,superfamily_NA-bd_OB-fold,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FXR1	HGNC	ENSG00000114416				129	0	0	84	24	22.2222
YEATS2	0	genome.wustl.edu	37	3	183490118	183490118	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	183490118	183490118	C	T	SNP	YEATS2	ENST00000305135	human	ensembl	74_37	+1	known	missense	c.1973	p.A658V	0.997	NULL	pfam_YEATS,pfscan_YEATS	-	no_errors	YEATS2	HGNC	ENSG00000163872				82	0	0	41	14	25.4545
ABCC5	0	genome.wustl.edu	37	3	183689508	183689508	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	183689508	183689508	C	T	SNP	ABCC5	ENST00000334444	human	ensembl	74_37	-1	known	missense	c.1604	p.R535H	0.002	superfamily_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC5	HGNC	ENSG00000114770				46	0	0	32	10	23.8095
AP2M1	0	genome.wustl.edu	37	3	183900553	183900553	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	183900553	183900553	G	A	SNP	AP2M1	ENST00000292807	human	ensembl	74_37	+1	known	missense	c.1070	p.R357H	1.000	pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C,prints_Clathrin_mu	pfam_Clathrin_mu_C,pfam_AP_mu_sigma_su,superfamily_Clathrin_mu_C,superfamily_Longin-like_dom,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C,prints_Clathrin_mu	-	no_errors	AP2M1	HGNC	ENSG00000161203				69	0	0	60	6	9.09091
ABCF3	0	genome.wustl.edu	37	3	183910955	183910955	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	183910955	183910955	C	T	SNP	ABCF3	ENST00000429586	human	ensembl	74_37	+1	known	missense	c.1816	p.R606C	1.000	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCF3	HGNC	ENSG00000161204				53	0	0	34	15	30.6122
CAMK2N2	0	genome.wustl.edu	37	3	183978984	183978984	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	183978984	183978984	C	T	SNP	CAMK2N2	ENST00000296238	human	ensembl	74_37	-1	known	silent	c.90	p.L30	0.998	NULL	NULL	-	no_errors	CAMK2N2	HGNC	ENSG00000163888				15	0	0	12	4	25
ECE2	0	genome.wustl.edu	37	3	184002835	184002835	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	184002835	184002835	G	A	SNP	ECE2	ENST00000402825	human	ensembl	74_37	+1	known	missense	c.1444	p.V482M	1.000	pfam_Peptidase_M13_N	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,pfam_Methyltransf_11,prints_Peptidase_M13_C	-	no_errors	ECE2	HGNC	ENSG00000145194				115	0	0	71	8	10.1266
ECE2	0	genome.wustl.edu	37	3	184008830	184008830	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	184008830	184008830	C	T	SNP	ECE2	ENST00000402825	human	ensembl	74_37	+1	known	missense	c.2191	p.R731C	0.926	pfam_Peptidase_M13_C	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,pfam_Methyltransf_11,prints_Peptidase_M13_C	-	no_errors	ECE2	HGNC	ENSG00000145194				116	0	0	82	6	6.81818
PSMD2	0	genome.wustl.edu	37	3	184025435	184025435	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	184025435	184025435	G	A	SNP	PSMD2	ENST00000310118	human	ensembl	74_37	+1	known	missense	c.2237	p.R746H	1.000	superfamily_ARM-type_fold,pirsf_26S_Psome_Rpn1	pfam_Proteasome/cyclosome_rpt,superfamily_ARM-type_fold,pirsf_26S_Psome_Rpn1	-	no_errors	PSMD2	HGNC	ENSG00000175166				55	0	0	48	17	26.1538
EIF4G1	0	genome.wustl.edu	37	3	184039307	184039307	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	184039307	184039307	G	A	SNP	EIF4G1	ENST00000352767	human	ensembl	74_37	+1	known	missense	c.956	p.R319H	1.000	NULL	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,pfam_W2_domain,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI,smart_W2_domain	-	no_errors	EIF4G1	HGNC	ENSG00000114867				105	0	0	58	24	29.2683
EPHB3	0	genome.wustl.edu	37	3	184290699	184290699	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	184290699	184290699	C	T	SNP	EPHB3	ENST00000330394	human	ensembl	74_37	+1	known	silent	c.591	p.G197	0.241	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ephrin_rcpt_lig-bd_dom,superfamily_Galactose-bd-like,smart_Ephrin_rcpt_lig-bd_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHB3	HGNC	ENSG00000182580				35	0	0	17	18	51.4286
EPHB3	0	genome.wustl.edu	37	3	184297350	184297350	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	184297350	184297350	C	T	SNP	EPHB3	ENST00000330394	human	ensembl	74_37	+1	known	silent	c.1887	p.D629	0.839	pirsf_Tyr_kinase_ephrin_rcpt,superfamily_Kinase-like_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHB3	HGNC	ENSG00000182580				52	0	0	41	34	45.3333
VPS8	0	genome.wustl.edu	37	3	184714256	184714256	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	184714256	184714256	G	A	SNP	VPS8	ENST00000287546	human	ensembl	74_37	+1	known	missense	c.3803	p.R1268H	1.000	smart_Znf_RING,pfscan_Znf_RING	superfamily_Quinonprotein_ADH-like_supfam,superfamily_ARM-type_fold,smart_Znf_RING,pfscan_Znf_RING,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	VPS8	HGNC	ENSG00000156931				73	0	0	59	23	28.0488
SENP2	0	genome.wustl.edu	37	3	185347619	185347619	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	185347619	185347619	A	C	SNP	SENP2	ENST00000296257	human	ensembl	74_37	+1	known	missense	c.1757	p.Q586P	1.000	NULL	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP2	HGNC	ENSG00000163904				85	0	0	49	4	7.54717
TRA2B	0	genome.wustl.edu	37	3	185641779	185641779	+	RNA	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	185641779	185641779	A	G	SNP	TRA2B	ENST00000465245	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TRA2B	HGNC	ENSG00000136527				59	0	0	39	20	33.8983
TRA2B	0	genome.wustl.edu	37	3	185643269	185643269	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	185643269	185643269	G	A	SNP	TRA2B	ENST00000453386	human	ensembl	74_37	-1	known	missense	c.316	p.R106C	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TRA2B	HGNC	ENSG00000136527				89	0	0	65	7	9.72222
TBCCD1	0	genome.wustl.edu	37	3	186281967	186281967	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	186281967	186281967	C	T	SNP	TBCCD1	ENST00000338733	human	ensembl	74_37	-1	known	missense	c.152	p.R51H	0.829	NULL	pfam_Tubulin-bd_cofactor_C_dom,superfamily_Adenylate_cyclase-assoc_CAP_C,smart_CARP_motif	-	no_errors	TBCCD1	HGNC	ENSG00000113838				56	0	0	54	8	12.9032
HRG	0	genome.wustl.edu	37	3	186395126	186395126	+	Silent	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	186395126	186395126	T	C	SNP	HRG	ENST00000232003	human	ensembl	74_37	+1	known	silent	c.1032	p.N344	0.000	NULL	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	HRG	HGNC	ENSG00000113905				47	0	0	47	3	6
ST6GAL1	0	genome.wustl.edu	37	3	186761061	186761061	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	186761061	186761061	G	A	SNP	ST6GAL1	ENST00000169298	human	ensembl	74_37	+1	known	silent	c.570	p.A190	0.012	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST6GAL1	HGNC	ENSG00000073849				127	0	0	113	6	5.04202
BCL6	0	genome.wustl.edu	37	3	187451444	187451444	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	187451444	187451444	C	T	SNP	BCL6	ENST00000232014	human	ensembl	74_37	-1	known	missense	c.38	p.R13H	1.000	superfamily_BTB/POZ_fold	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	BCL6	HGNC	ENSG00000113916				105	0	0	106	6	5.35714
CLDN1	0	genome.wustl.edu	37	3	190030679	190030679	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	190030679	190030679	C	T	SNP	CLDN1	ENST00000295522	human	ensembl	74_37	-1	known	missense	c.370	p.A124T	0.533	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin,prints_Claudin1,prints_Claudin14	-	no_errors	CLDN1	HGNC	ENSG00000163347				186	0	0	137	40	22.5989
CCDC50	0	genome.wustl.edu	37	3	191097951	191097951	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	191097951	191097951	T	C	SNP	CCDC50	ENST00000392456	human	ensembl	74_37	+1	known	missense	c.980	p.M327T	0.874	NULL	NULL	-	no_errors	CCDC50	HGNC	ENSG00000152492				41	0	0	30	18	37.5
KCNH8	0	genome.wustl.edu	37	3	19190212	19190212	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	19190212	19190212	A	T	SNP	KCNH8	ENST00000328405	human	ensembl	74_37	+1	known	missense	c.1	p.M1L	1.000	NULL	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold_3,pfam_PAS_4,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,superfamily_tRNA-bd_arm,smart_PAC,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,pfscan_PAS-assoc_C,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,prints_K_chnl_volt-dep_EAG,tigrfam_PAS	-	no_errors	KCNH8	HGNC	ENSG00000183960				166	0	0	88	40	31.25
MB21D2	0	genome.wustl.edu	37	3	192516776	192516776	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	192516776	192516776	G	A	SNP	MB21D2	ENST00000392452	human	ensembl	74_37	-1	known	missense	c.875	p.A292V	1.000	pfam_Mab-21_dom	pfam_Mab-21_dom	-	no_errors	MB21D2	HGNC	ENSG00000180611				27	0	0	18	3	14.2857
ATP13A4	0	genome.wustl.edu	37	3	193171906	193171906	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	193171906	193171906	C	T	SNP	ATP13A4	ENST00000342695	human	ensembl	74_37	-1	known	missense	c.2011	p.A671T	0.002	pfam_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_Cation_typ_V,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP13A4	HGNC	ENSG00000127249				70	0	0	50	12	19.3548
OPA1	0	genome.wustl.edu	37	3	193343987	193343987	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	193343987	193343987	G	A	SNP	OPA1	ENST00000361510	human	ensembl	74_37	+1	known	missense	c.785	p.R262H	1.000	NULL	pfam_Dynamin_GTPase,superfamily_P-loop_NTPase,smart_Dynamin_GTPase,prints_Dynamin_SF	-	no_errors	OPA1	HGNC	ENSG00000198836				42	0	0	37	19	33.9286
LRRC15	0	genome.wustl.edu	37	3	194080553	194080553	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	194080553	194080553	C	T	SNP	LRRC15	ENST00000439944	human	ensembl	74_37	-1	known	missense	c.1238	p.G413D	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRRC15	HGNC	ENSG00000172061				23	0	0	29	12	29.2683
ATP13A3	0	genome.wustl.edu	37	3	194158063	194158063	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	194158063	194158063	G	A	SNP	ATP13A3	ENST00000256031	human	ensembl	74_37	-1	known	missense	c.1976	p.A659V	1.000	superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_Cation_typ_V,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP13A3	HGNC	ENSG00000133657				135	0	0	82	25	23.3645
MUC20	0	genome.wustl.edu	37	3	195453212	195453212	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	195453212	195453212	G	A	SNP	MUC20	ENST00000447234	human	ensembl	74_37	+1	known	missense	c.1738	p.A580T	0.000	NULL	NULL	-	no_errors	MUC20	HGNC	ENSG00000176945				105	0	0	73	17	18.8889
MUC4	0	genome.wustl.edu	37	3	195508234	195508234	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	195508234	195508234	G	A	SNP	MUC4	ENST00000463781	human	ensembl	74_37	-1	known	missense	c.10217	p.T3406I	0.001	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EG-like_dom,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113				34	0	0	25	4	13.7931
MUC4	0	genome.wustl.edu	37	3	195512699	195512699	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	195512699	195512699	C	T	SNP	MUC4	ENST00000463781	human	ensembl	74_37	-1	known	missense	c.5752	p.A1918T	0.003	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EG-like_dom,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113				51	0	0	44	6	12
TM4SF19	0	genome.wustl.edu	37	3	196054415	196054415	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	196054415	196054415	C	T	SNP	TM4SF19	ENST00000273695	human	ensembl	74_37	-1	known	missense	c.47	p.R16H	0.998	pfam_L6_membrane	pfam_L6_membrane	-	no_errors	TM4SF19	HGNC	ENSG00000145107				82	0	0	50	17	25.3731
NRROS	0	genome.wustl.edu	37	3	196388524	196388524	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	196388524	196388524	C	T	SNP	NRROS	ENST00000328557	human	ensembl	74_37	+1	known	silent	c.2010	p.I670	0.988	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	NRROS	HGNC	ENSG00000174004				107	0	0	84	29	25.6637
PIGZ	0	genome.wustl.edu	37	3	196674848	196674848	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	196674848	196674848	G	A	SNP	PIGZ	ENST00000412723	human	ensembl	74_37	-1	known	missense	c.920	p.A307V	0.992	pfam_GPI_mannosylTrfase	pfam_GPI_mannosylTrfase	-	no_errors	PIGZ	HGNC	ENSG00000119227				122	1	0.813008	60	4	6.25
MFI2	0	genome.wustl.edu	37	3	196736624	196736624	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	196736624	196736624	C	T	SNP	MFI2	ENST00000296350	human	ensembl	74_37	-1	known	missense	c.1390	p.A464T	0.999	pfam_Transferrin_fam,smart_Transferrin_fam,pirsf_Transferrin	pfam_Transferrin_fam,smart_Transferrin_fam,pirsf_Transferrin,prints_Transferrin_fam	-	no_errors	MFI2	HGNC	ENSG00000163975				34	0	0	22	8	26.6667
LRCH3	0	genome.wustl.edu	37	3	197559147	197559147	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	197559147	197559147	A	G	SNP	LRCH3	ENST00000438796	human	ensembl	74_37	+1	known	missense	c.1061	p.Y354C	1.000	NULL	pfam_Leu-rich_rpt,pfam_CH-domain,superfamily_CH-domain,smart_Leu-rich_rpt_typical-subtyp,smart_CH-domain,pfscan_CH-domain	-	no_errors	LRCH3	HGNC	ENSG00000186001				121	0	0	89	10	10.101
IQCG	0	genome.wustl.edu	37	3	197618326	197618326	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	197618326	197618326	G	A	SNP	IQCG	ENST00000265239	human	ensembl	74_37	-1	known	silent	c.1188	p.S396	0.105	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,pfscan_IQ_motif_EF-hand-BS	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCG	HGNC	ENSG00000114473				87	0	0	59	27	31.3953
IQCG	0	genome.wustl.edu	37	3	197618384	197618384	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	197618384	197618384	C	T	SNP	IQCG	ENST00000265239	human	ensembl	74_37	-1	known	missense	c.1130	p.R377H	0.996	superfamily_P-loop_NTPase	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCG	HGNC	ENSG00000114473				100	0	0	111	7	5.9322
TOP2B	0	genome.wustl.edu	37	3	25668727	25668727	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	25668727	25668727	C	T	SNP	TOP2B	ENST00000264331	human	ensembl	74_37	-1	known	missense	c.1967	p.R656H	1.000	superfamily_Topo_IIA_like_dom,smart_Topo_IIA	pfam_Topo_IIA_A/C,pfam_Topo_IIA_bsu_dom2,pfam_DTHCT,pfam_HATPase_ATP-bd,superfamily_Topo_IIA_like_dom,superfamily_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,smart_Topo_IIA,smart_Topo_IIA_A/C,prints_TopoII_euk,prints_Topo_IIA,prints_Transcrpt_fac_NFYB/HAP3	-	no_errors	TOP2B	HGNC	ENSG00000077097				171	0	0	148	27	15.4286
LRRC3B	0	genome.wustl.edu	37	3	26751046	26751046	+	RNA	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	26751046	26751046	A	G	SNP	LRRC3B	ENST00000469437	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.022	-	-	-	no_errors	LRRC3B	HGNC	ENSG00000179796				17	0	0	19	4	17.3913
LRRC3B	0	genome.wustl.edu	37	3	26751777	26751777	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	26751777	26751777	C	T	SNP	LRRC3B	ENST00000396641	human	ensembl	74_37	+1	known	missense	c.614	p.A205V	1.000	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC3B	HGNC	ENSG00000179796				47	0	0	30	7	18.9189
NEK10	0	genome.wustl.edu	37	3	27244008	27244008	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	27244008	27244008	C	A	SNP	NEK10	ENST00000383771	human	ensembl	74_37	-1	known	missense	c.67	p.D23Y	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,pfscan_Prot_kinase_dom	-	no_errors	NEK10	HGNC	ENSG00000163491				69	0	0	43	17	28.3333
CMTM8	0	genome.wustl.edu	37	3	32409470	32409470	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	32409470	32409470	C	T	SNP	CMTM8	ENST00000307526	human	ensembl	74_37	+1	known	missense	c.428	p.A143V	0.979	pfam_Marvel,prints_MAL	pfam_Marvel,prints_MAL	-	no_errors	CMTM8	HGNC	ENSG00000170293				74	0	0	56	5	8.19672
CRTAP	0	genome.wustl.edu	37	3	33174107	33174107	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	33174107	33174107	A	G	SNP	CRTAP	ENST00000320954	human	ensembl	74_37	+1	known	missense	c.983	p.D328G	1.000	NULL	NULL	-	no_errors	CRTAP	HGNC	ENSG00000170275				193	0	0	154	14	8.33333
UBP1	0	genome.wustl.edu	37	3	33453092	33453092	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	33453092	33453092	C	T	SNP	UBP1	ENST00000283628	human	ensembl	74_37	-1	known	missense	c.536	p.R179H	1.000	pfam_CP2	pfam_CP2,superfamily_SAM/pointed	-	no_errors	UBP1	HGNC	ENSG00000153560				109	0	0	87	30	25.641
CLASP2	0	genome.wustl.edu	37	3	33592749	33592749	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	33592749	33592749	G	A	SNP	CLASP2	ENST00000399362	human	ensembl	74_37	-1	known	missense	c.3169	p.R1057W	1.000	superfamily_ARM-type_fold	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	CLASP2	HGNC	ENSG00000163539				99	0	0	59	15	20.2703
CLASP2	0	genome.wustl.edu	37	3	33617676	33617676	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	33617676	33617676	C	T	SNP	CLASP2	ENST00000399362	human	ensembl	74_37	-1	known	silent	c.2439	p.A813	0.008	superfamily_ARM-type_fold	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	CLASP2	HGNC	ENSG00000163539				92	0	0	54	15	21.7391
CLASP2	0	genome.wustl.edu	37	3	33729801	33729801	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	33729801	33729801	G	A	SNP	CLASP2	ENST00000399362	human	ensembl	74_37	-1	known	silent	c.438	p.G146	1.000	pfam_CLASP_N_dom,superfamily_ARM-type_fold	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	CLASP2	HGNC	ENSG00000163539				18	0	0	10	4	28.5714
TRANK1	0	genome.wustl.edu	37	3	36873314	36873314	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	36873314	36873314	C	T	SNP	TRANK1	ENST00000429976	human	ensembl	74_37	-1	known	missense	c.7628	p.R2543H	0.053	NULL	pfam_UvrD-like_ATP-bd,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_TPR_repeat,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR-contain_dom	-	no_errors	TRANK1	HGNC	ENSG00000168016				98	0	0	59	24	28.9157
TRANK1	0	genome.wustl.edu	37	3	36873381	36873381	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	36873381	36873381	G	T	SNP	TRANK1	ENST00000429976	human	ensembl	74_37	-1	known	missense	c.7561	p.L2521M	1.000	NULL	pfam_UvrD-like_ATP-bd,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_TPR_repeat,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR-contain_dom	-	no_errors	TRANK1	HGNC	ENSG00000168016				96	0	0	98	7	6.66667
TRANK1	0	genome.wustl.edu	37	3	36897695	36897695	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	36897695	36897695	C	T	SNP	TRANK1	ENST00000429976	human	ensembl	74_37	-1	known	missense	c.3386	p.G1129D	0.000	superfamily_P-loop_NTPase	pfam_UvrD-like_ATP-bd,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_TPR_repeat,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR-contain_dom	-	no_errors	TRANK1	HGNC	ENSG00000168016				53	0	0	46	6	11.5385
LRRFIP2	0	genome.wustl.edu	37	3	37095348	37095348	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	37095348	37095348	C	T	SNP	LRRFIP2	ENST00000336686	human	ensembl	74_37	-1	known	silent	c.2160	p.Q720	1.000	NULL	pfam_Leu-rich_rep_flightless-int_pr,superfamily_bHLH_dom,superfamily_Prefoldin	-	no_errors	LRRFIP2	HGNC	ENSG00000093167				70	0	0	62	4	6.06061
GOLGA4	0	genome.wustl.edu	37	3	37367797	37367797	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	37367797	37367797	G	A	SNP	GOLGA4	ENST00000361924	human	ensembl	74_37	+1	known	missense	c.4420	p.A1474T	0.196	NULL	pfam_GRIP,superfamily_GRIP,superfamily_tRNA-bd_arm,superfamily_t-SNARE,superfamily_Prefoldin,smart_GRIP,pfscan_GRIP	-	no_errors	GOLGA4	HGNC	ENSG00000144674				119	0	0	99	12	10.8108
GOLGA4	0	genome.wustl.edu	37	3	37388776	37388776	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	37388776	37388776	C	T	SNP	GOLGA4	ENST00000361924	human	ensembl	74_37	+1	known	missense	c.6565	p.R2189C	1.000	pfam_GRIP,superfamily_GRIP,smart_GRIP,pfscan_GRIP	pfam_GRIP,superfamily_GRIP,superfamily_tRNA-bd_arm,superfamily_t-SNARE,superfamily_Prefoldin,smart_GRIP,pfscan_GRIP	-	no_errors	GOLGA4	HGNC	ENSG00000144674				97	0	0	60	30	33.3333
ITGA9	0	genome.wustl.edu	37	3	37559045	37559045	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	37559045	37559045	G	A	SNP	ITGA9	ENST00000264741	human	ensembl	74_37	+1	known	silent	c.1086	p.A362	0.336	smart_Int_alpha_beta-p	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA9	HGNC	ENSG00000144668				14	0	0	7	3	30
PLCD1	0	genome.wustl.edu	37	3	38061761	38061761	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	38061761	38061761	C	T	SNP	PLCD1	ENST00000463876	human	ensembl	74_37	-1	known	silent	c.180	p.E60	0.767	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_EF_hand_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_EF_hand_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCD1	HGNC	ENSG00000187091				64	0	0	34	13	27.6596
DLEC1	0	genome.wustl.edu	37	3	38136483	38136483	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	38136483	38136483	C	T	SNP	DLEC1	ENST00000346219	human	ensembl	74_37	+1	known	missense	c.2033	p.A678V	1.000	NULL	superfamily_PapD-like	-	no_errors	DLEC1	HGNC	ENSG00000008226				86	0	0	41	22	34.9206
SLC22A13	0	genome.wustl.edu	37	3	38316619	38316619	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	38316619	38316619	G	A	SNP	SLC22A13	ENST00000450935	human	ensembl	74_37	+1	known	missense	c.499	p.A167T	0.000	NULL	NULL	-	no_errors	SLC22A13	HGNC	ENSG00000172940				167	0	0	133	13	8.90411
SLC22A14	0	genome.wustl.edu	37	3	38354921	38354921	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	38354921	38354921	G	A	SNP	SLC22A14	ENST00000273173	human	ensembl	74_37	+1	known	missense	c.1108	p.D370N	1.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A14	HGNC	ENSG00000144671				79	0	0	70	16	18.6047
EXOG	0	genome.wustl.edu	37	3	38565787	38565787	+	Silent	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	38565787	38565787	T	C	SNP	EXOG	ENST00000287675	human	ensembl	74_37	+1	known	silent	c.1041	p.Y347	0.165	NULL	pfam_DNA/RNA_non-sp_Endonuclease,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A	-	no_errors	EXOG	HGNC	ENSG00000157036				137	0	0	87	5	5.43478
LRRN1	0	genome.wustl.edu	37	3	3888176	3888176	+	Silent	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	3888176	3888176	C	A	SNP	LRRN1	ENST00000319331	human	ensembl	74_37	+1	known	silent	c.1851	p.A617	0.000	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRRN1	HGNC	ENSG00000175928				162	0	0	119	42	26.087
CSRNP1	0	genome.wustl.edu	37	3	39186606	39186606	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	39186606	39186606	C	T	SNP	CSRNP1	ENST00000273153	human	ensembl	74_37	-1	known	missense	c.347	p.R116H	0.092	NULL	prints_Cys/Ser-rich_nuc_prot	-	no_errors	CSRNP1	HGNC	ENSG00000144655				48	0	0	30	13	30.2326
SLC25A38	0	genome.wustl.edu	37	3	39437962	39437962	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	39437962	39437962	C	T	SNP	SLC25A38	ENST00000273158	human	ensembl	74_37	+1	known	missense	c.866	p.A289V	0.998	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A38	HGNC	ENSG00000144659				175	0	0	122	29	19.2053
ENTPD3	0	genome.wustl.edu	37	3	40456333	40456333	+	Splice_Site	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	40456333	40456333	T	C	SNP	ENTPD3	ENST00000301825	human	ensembl	74_37	+1	known	splice_site	c.597+2	e5+2	1.000	-	-	-	no_errors	ENTPD3	HGNC	ENSG00000168032				203	0	0	109	65	37.3563
ZNF620	0	genome.wustl.edu	37	3	40557940	40557940	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	40557940	40557940	C	T	SNP	ZNF620	ENST00000314529	human	ensembl	74_37	+1	known	silent	c.855	p.C285	0.966	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF620	HGNC	ENSG00000177842				98	0	0	65	22	25.2874
TRAK1	0	genome.wustl.edu	37	3	42235319	42235319	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	42235319	42235319	G	A	SNP	TRAK1	ENST00000396175	human	ensembl	74_37	+1	known	missense	c.730	p.A244T	0.882	pfam_HAP1_N	pfam_HAP1_N,pfam_Traffickng_kinesin-bd_prot_dom	-	no_errors	TRAK1	HGNC	ENSG00000182606				125	1	0.793651	101	35	25.7353
TRAK1	0	genome.wustl.edu	37	3	42240734	42240734	+	Silent	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	42240734	42240734	T	C	SNP	TRAK1	ENST00000396175	human	ensembl	74_37	+1	known	silent	c.1005	p.S335	0.999	NULL	pfam_HAP1_N,pfam_Traffickng_kinesin-bd_prot_dom	-	no_errors	TRAK1	HGNC	ENSG00000182606				47	0	0	31	4	11.4286
TRAK1	0	genome.wustl.edu	37	3	42243993	42243993	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	42243993	42243993	C	T	SNP	TRAK1	ENST00000396175	human	ensembl	74_37	+1	known	missense	c.1319	p.A440V	1.000	pfam_Traffickng_kinesin-bd_prot_dom	pfam_HAP1_N,pfam_Traffickng_kinesin-bd_prot_dom	-	no_errors	TRAK1	HGNC	ENSG00000182606				32	0	0	17	4	19.0476
SNRK	0	genome.wustl.edu	37	3	43389129	43389129	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	43389129	43389129	T	C	SNP	SNRK	ENST00000296088	human	ensembl	74_37	+1	known	missense	c.1378	p.S460P	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	SNRK	HGNC	ENSG00000163788				78	0	0	41	26	38.806
ZNF660	0	genome.wustl.edu	37	3	44635896	44635896	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	44635896	44635896	A	T	SNP	ZNF660	ENST00000322734	human	ensembl	74_37	+1	known	missense	c.211	p.I71F	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF660	HGNC	ENSG00000144792				111	0	0	63	34	35.0515
KIF15	0	genome.wustl.edu	37	3	44846554	44846554	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	44846554	44846554	C	T	SNP	KIF15	ENST00000326047	human	ensembl	74_37	+1	known	missense	c.1723	p.P575S	0.001	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF15	HGNC	ENSG00000163808				65	0	0	64	7	9.85915
EXOSC7	0	genome.wustl.edu	37	3	45030680	45030680	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	45030680	45030680	G	A	SNP	EXOSC7	ENST00000265564	human	ensembl	74_37	+1	known	missense	c.106	p.E36K	1.000	pfam_ExoRNase_PH_dom1,superfamily_Ribosomal_S5_D2-typ_fold	pfam_ExoRNase_PH_dom1,pfam_ExoRNase_PH_dom2,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ExoRNase_PH_dom2	-	no_errors	EXOSC7	HGNC	ENSG00000075914				44	0	0	27	6	18.1818
FYCO1	0	genome.wustl.edu	37	3	46008705	46008705	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	46008705	46008705	G	A	SNP	FYCO1	ENST00000535325	human	ensembl	74_37	-1	known	silent	c.2121	p.G707	0.000	superfamily_Prefoldin	pfam_Znf_FYVE,pfam_Run,superfamily_GOLD,superfamily_Znf_FYVE_PHD,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Znf_FYVE,pfscan_GOLD,pfscan_Run,pfscan_Znf_FYVE-rel	-	no_errors	FYCO1	HGNC	ENSG00000163820				118	0	0	102	14	12.069
FYCO1	0	genome.wustl.edu	37	3	46009957	46009957	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	46009957	46009957	C	T	SNP	FYCO1	ENST00000535325	human	ensembl	74_37	-1	known	missense	c.869	p.R290H	0.003	NULL	pfam_Znf_FYVE,pfam_Run,superfamily_GOLD,superfamily_Znf_FYVE_PHD,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Znf_FYVE,pfscan_GOLD,pfscan_Run,pfscan_Znf_FYVE-rel	-	no_errors	FYCO1	HGNC	ENSG00000163820				66	0	0	51	19	27.1429
CCR5	0	genome.wustl.edu	37	3	46414590	46414590	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	46414590	46414590	A	G	SNP	CCR5	ENST00000292303	human	ensembl	74_37	+1	known	missense	c.197	p.D66G	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_rcpt,prints_GPCR_Rhodpsn,prints_Chemokine_CCR1	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_rcpt,prints_GPCR_Rhodpsn,prints_Chemokine_CCR5,prints_Chemokine_CCR1,prints_ATII_rcpt	-	no_errors	CCR5	HGNC	ENSG00000160791				171	0	0	127	37	22.561
MYL3	0	genome.wustl.edu	37	3	46904789	46904789	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	46904789	46904789	C	T	SNP	MYL3	ENST00000292327	human	ensembl	74_37	-1	known	missense	c.92	p.R31H	0.007	NULL	pfscan_EF_hand_dom	-	no_errors	MYL3	HGNC	ENSG00000160808				139	0	0	110	7	5.98291
PTH1R	0	genome.wustl.edu	37	3	46940211	46940211	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	46940211	46940211	G	A	SNP	PTH1R	ENST00000313049	human	ensembl	74_37	+1	known	missense	c.698	p.R233H	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_parathyroid_rcpt	-	no_errors	PTH1R	HGNC	ENSG00000160801				38	0	0	27	3	10
ITPR1	0	genome.wustl.edu	37	3	4703860	4703860	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	4703860	4703860	C	T	SNP	ITPR1	ENST00000302640	human	ensembl	74_37	+1	known	missense	c.1301	p.A434V	1.000	prints_InsP3_rcpt-bd	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR1	HGNC	ENSG00000150995				67	0	0	52	17	24.6377
ITPR1	0	genome.wustl.edu	37	3	4735265	4735265	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	4735265	4735265	G	A	SNP	ITPR1	ENST00000302640	human	ensembl	74_37	+1	known	missense	c.4076	p.R1359Q	1.000	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR1	HGNC	ENSG00000150995				133	0	0	77	38	33.0435
PTPN23	0	genome.wustl.edu	37	3	47453616	47453616	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	47453616	47453616	G	A	SNP	PTPN23	ENST00000265562	human	ensembl	74_37	+1	known	missense	c.4106	p.R1369H	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_BRO1_dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_BRO1_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN23	HGNC	ENSG00000076201				41	0	0	38	11	22.449
CSPG5	0	genome.wustl.edu	37	3	47604238	47604238	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	47604238	47604238	G	T	SNP	CSPG5	ENST00000383738	human	ensembl	74_37	-1	known	missense	c.1553	p.A518D	0.998	pfam_Neural_ProG_Cyt	pfam_Chon_Sulph_att,pfam_Neural_ProG_Cyt	-	no_errors	CSPG5	HGNC	ENSG00000114646				113	0	0	78	24	23.5294
SMARCC1	0	genome.wustl.edu	37	3	47712178	47712178	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	47712178	47712178	C	T	SNP	SMARCC1	ENST00000254480	human	ensembl	74_37	-1	known	nonsense	c.1869	p.W623*	1.000	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,superfamily_BRCT_dom,smart_Chromo_domain/shadow,smart_SANT/Myb,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	SMARCC1	HGNC	ENSG00000173473				90	0	0	61	18	22.7848
DHX30	0	genome.wustl.edu	37	3	47888355	47888355	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	47888355	47888355	G	A	SNP	DHX30	ENST00000445061	human	ensembl	74_37	+1	known	missense	c.1793	p.R598H	1.000	superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_DUF1605,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX30	HGNC	ENSG00000132153				18	0	0	11	5	31.25
ITPR1	0	genome.wustl.edu	37	3	4808340	4808340	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	4808340	4808340	G	T	SNP	ITPR1	ENST00000302640	human	ensembl	74_37	+1	known	nonsense	c.5626	p.G1876*	1.000	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR1	HGNC	ENSG00000150995				108	1	0.917431	79	30	27.5229
ITPR1	0	genome.wustl.edu	37	3	4825528	4825528	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	4825528	4825528	G	A	SNP	ITPR1	ENST00000302640	human	ensembl	74_37	+1	known	missense	c.6494	p.S2165N	0.154	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR1	HGNC	ENSG00000150995				40	0	0	27	12	30.7692
FBXW12	0	genome.wustl.edu	37	3	48423521	48423521	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	48423521	48423521	A	G	SNP	FBXW12	ENST00000296438	human	ensembl	74_37	+1	known	missense	c.1241	p.Y414C	0.007	NULL	pfam_F-box_dom,superfamily_Quino_amine_DH_bsu,superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXW12	HGNC	ENSG00000164049				74	0	0	58	4	6.45161
PLXNB1	0	genome.wustl.edu	37	3	48451962	48451962	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	48451962	48451962	G	A	SNP	PLXNB1	ENST00000296440	human	ensembl	74_37	-1	known	missense	c.5422	p.R1808W	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNB1	HGNC	ENSG00000164050				31	0	0	22	3	12
PLXNB1	0	genome.wustl.edu	37	3	48455097	48455097	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	48455097	48455097	A	G	SNP	PLXNB1	ENST00000296440	human	ensembl	74_37	-1	known	missense	c.4517	p.I1506T	1.000	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNB1	HGNC	ENSG00000164050				42	0	0	15	7	31.8182
PLXNB1	0	genome.wustl.edu	37	3	48462284	48462284	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	48462284	48462284	G	A	SNP	PLXNB1	ENST00000296440	human	ensembl	74_37	-1	known	missense	c.1892	p.A631V	1.000	superfamily_Plexin-like_fold,smart_Plexin-like_fold	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNB1	HGNC	ENSG00000164050				43	0	0	17	5	22.7273
CELSR3	0	genome.wustl.edu	37	3	48678953	48678953	+	Silent	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	48678953	48678953	C	A	SNP	CELSR3	ENST00000544264	human	ensembl	74_37	-1	known	silent	c.8844	p.V2948	1.000	NULL	pfam_Cadherin,pfam_GPCR_2_secretin-like,pfam_Laminin_G,pfam_DUF3497,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR3	HGNC	ENSG00000008300				39	0	0	20	8	28.5714
QRICH1	0	genome.wustl.edu	37	3	49095173	49095173	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	49095173	49095173	G	A	SNP	QRICH1	ENST00000357496	human	ensembl	74_37	-1	known	missense	c.460	p.P154S	0.981	NULL	pfam_DUF3504,superfamily_DEATH-like_dom	-	no_errors	QRICH1	HGNC	ENSG00000198218				84	0	0	64	6	8.57143
QRICH1	0	genome.wustl.edu	37	3	49114337	49114337	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	49114337	49114337	C	T	SNP	QRICH1	ENST00000357496	human	ensembl	74_37	-1	known	silent	c.114	p.G38	0.971	superfamily_DEATH-like_dom	pfam_DUF3504,superfamily_DEATH-like_dom	-	no_errors	QRICH1	HGNC	ENSG00000198218				137	0	0	102	13	11.3043
USP19	0	genome.wustl.edu	37	3	49148537	49148537	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	49148537	49148537	G	A	SNP	USP19	ENST00000398888	human	ensembl	74_37	-1	known	missense	c.3082	p.R1028C	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Znf_MYND,pfam_CS_dom,superfamily_HSP20-like_chaperone,pfscan_CS_dom,pfscan_Znf_MYND,pfscan_Peptidase_C19/C67	-	no_errors	USP19	HGNC	ENSG00000172046				90	0	0	42	20	32.2581
CCDC71	0	genome.wustl.edu	37	3	49200838	49200838	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	49200838	49200838	C	T	SNP	CCDC71	ENST00000321895	human	ensembl	74_37	-1	known	silent	c.804	p.R268	0.000	NULL	NULL	-	no_errors	CCDC71	HGNC	ENSG00000177352				86	0	0	44	13	22.807
CCDC36	0	genome.wustl.edu	37	3	49292916	49292916	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	49292916	49292916	G	T	SNP	CCDC36	ENST00000296449	human	ensembl	74_37	+1	known	missense	c.626	p.R209I	0.000	NULL	NULL	-	no_errors	CCDC36	HGNC	ENSG00000173421				89	0	0	58	28	32.5581
AMT	0	genome.wustl.edu	37	3	49459799	49459799	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	49459799	49459799	C	T	SNP	AMT	ENST00000273588	human	ensembl	74_37	-1	known	missense	c.85	p.A29T	0.002	pirsf_GcvT	pfam_GCV_T_N,pfam_GCV_T_C,pirsf_GcvT,tigrfam_GcvT	-	no_errors	AMT	HGNC	ENSG00000145020				28	0	0	18	5	21.7391
DAG1	0	genome.wustl.edu	37	3	49570086	49570086	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	49570086	49570086	G	A	SNP	DAG1	ENST00000308775	human	ensembl	74_37	+1	known	silent	c.2142	p.R714	0.982	pfam_DAG1	pfam_DAG1,superfamily_Alpha-dystroglycan_domain_2,superfamily_Cadherin-like,smart_Cadg	-	no_errors	DAG1	HGNC	ENSG00000173402				42	0	0	29	3	9.375
BSN	0	genome.wustl.edu	37	3	49694978	49694978	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	49694978	49694978	C	T	SNP	BSN	ENST00000296452	human	ensembl	74_37	+1	known	silent	c.7989	p.S2663	0.518	NULL	pfam_Znf_piccolo,superfamily_Znf_FYVE_PHD	-	no_errors	BSN	HGNC	ENSG00000164061				59	0	0	29	9	23.6842
BSN	0	genome.wustl.edu	37	3	49699714	49699714	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	49699714	49699714	C	T	SNP	BSN	ENST00000296452	human	ensembl	74_37	+1	known	missense	c.10436	p.A3479V	0.007	NULL	pfam_Znf_piccolo,superfamily_Znf_FYVE_PHD	-	no_errors	BSN	HGNC	ENSG00000164061				40	0	0	17	6	26.087
IP6K1	0	genome.wustl.edu	37	3	49785329	49785329	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	49785329	49785329	T	C	SNP	IP6K1	ENST00000321599	human	ensembl	74_37	-1	known	missense	c.145	p.K49E	1.000	NULL	pfam_IPK	-	no_errors	IP6K1	HGNC	ENSG00000176095				40	0	0	49	5	9.25926
MST1R	0	genome.wustl.edu	37	3	49935976	49935976	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	49935976	49935976	T	A	SNP	MST1R	ENST00000296474	human	ensembl	74_37	-1	known	missense	c.1694	p.D565V	0.994	pirsf_Tyr_kinase_HGF/MSP_rcpt,superfamily_Plexin-like_fold,superfamily_Ig_E-set,smart_Plexin-like_fold	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semap_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_IPT,superfamily_Semap_dom,superfamily_Kinase-like_dom,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Semap_dom,pfscan_Prot_kinase_dom	-	no_errors	MST1R	HGNC	ENSG00000164078				70	0	0	42	17	28.8136
RBM6	0	genome.wustl.edu	37	3	50005976	50005976	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	50005976	50005976	C	T	SNP	RBM6	ENST00000266022	human	ensembl	74_37	+1	known	missense	c.1118	p.S373F	1.000	NULL	pfam_G_patch_dom,smart_RRM_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_RRM_dom	-	no_errors	RBM6	HGNC	ENSG00000004534				101	0	0	80	5	5.88235
GNAT1	0	genome.wustl.edu	37	3	50231062	50231062	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	50231062	50231062	G	A	SNP	GNAT1	ENST00000232461	human	ensembl	74_37	+1	known	missense	c.415	p.A139T	1.000	pfam_Gprotein_alpha_su,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_I	-	no_errors	GNAT1	HGNC	ENSG00000114349				32	0	0	22	9	29.0323
SEMA3B	0	genome.wustl.edu	37	3	50314079	50314079	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	50314079	50314079	G	A	SNP	SEMA3B	ENST00000316347	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.969	-	-	-	no_errors	SEMA3B	HGNC	ENSG00000012171				11	0	0	8	4	33.3333
MAPKAPK3	0	genome.wustl.edu	37	3	50679181	50679181	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	50679181	50679181	G	A	SNP	MAPKAPK3	ENST00000357955	human	ensembl	74_37	+1	known	missense	c.403	p.D135N	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAPKAPK3	HGNC	ENSG00000114738				66	0	0	61	7	10.2941
DOCK3	0	genome.wustl.edu	37	3	51418570	51418570	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	51418570	51418570	C	T	SNP	DOCK3	ENST00000266037	human	ensembl	74_37	+1	known	silent	c.5673	p.S1891	0.540	NULL	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538				69	0	0	52	15	22.3881
RAD54L2	0	genome.wustl.edu	37	3	51673538	51673538	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	51673538	51673538	C	T	SNP	RAD54L2	ENST00000409535	human	ensembl	74_37	+1	known	missense	c.1964	p.A655V	0.963	superfamily_P-loop_NTPase	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	RAD54L2	HGNC	ENSG00000164080				65	0	0	53	6	10.1695
GRM2	0	genome.wustl.edu	37	3	51750038	51750038	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	51750038	51750038	G	A	SNP	GRM2	ENST00000395052	human	ensembl	74_37	+1	known	missense	c.2249	p.R750H	1.000	pfam_GPCR_3_C,pfscan_GPCR_3_C,prints_GPCR_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_2,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GRM2	HGNC	ENSG00000164082				70	0	0	56	18	24.3243
PCBP4	0	genome.wustl.edu	37	3	51993937	51993937	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	51993937	51993937	G	A	SNP	PCBP4	ENST00000395014	human	ensembl	74_37	-1	known	missense	c.553	p.R185C	0.998	smart_KH_dom	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	PCBP4	HGNC	ENSG00000090097				91	0	0	59	8	11.9403
PCBP4	0	genome.wustl.edu	37	3	51995032	51995032	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	51995032	51995032	G	A	SNP	PCBP4	ENST00000322099	human	ensembl	74_37	-1	known	silent	c.99	p.I33	0.383	pfam_KH_dom_type_1,pfam_KH_dom_type_2,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,pfam_KH_dom_type_2,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	PCBP4	HGNC	ENSG00000090097				117	0	0	112	11	8.94309
ABHD14A	0	genome.wustl.edu	37	3	52014637	52014637	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	52014637	52014637	C	T	SNP	ABHD14A	ENST00000273596	human	ensembl	74_37	+1	known	missense	c.626	p.A209V	0.068	NULL	pfam_Lysophospholipase_put	-	no_errors	ABHD14A	HGNC	ENSG00000248487				86	0	0	51	13	20.3125
ACY1	0	genome.wustl.edu	37	3	52022727	52022727	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	52022727	52022727	C	T	SNP	ACY1	ENST00000490244	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ACY1	HGNC	ENSG00000243989				191	0	0	135	38	21.9653
GLYCTK	0	genome.wustl.edu	37	3	52326603	52326603	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	52326603	52326603	G	A	SNP	GLYCTK	ENST00000436784	human	ensembl	74_37	+1	known	missense	c.1033	p.A345T	0.995	NULL	pfam_MOFRL	-	no_errors	GLYCTK	HGNC	ENSG00000168237				56	0	0	32	9	21.9512
DNAH1	0	genome.wustl.edu	37	3	52392637	52392637	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	52392637	52392637	T	A	SNP	DNAH1	ENST00000420323	human	ensembl	74_37	+1	known	missense	c.4150	p.L1384M	0.868	pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase	-	no_errors	DNAH1	HGNC	ENSG00000114841				31	0	0	12	3	20
STAB1	0	genome.wustl.edu	37	3	52556909	52556909	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	52556909	52556909	G	A	SNP	STAB1	ENST00000321725	human	ensembl	74_37	+1	known	missense	c.6863	p.R2288H	0.177	pfam_Link,superfamily_C-type_lectin_fold,smart_Link,pfscan_Link	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,smart_EG-like_dom,smart_EGF_laminin,smart_FAS1_domain,smart_EGF-like_Ca-bd_dom,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB1	HGNC	ENSG00000010327				76	0	0	51	4	7.27273
ITIH3	0	genome.wustl.edu	37	3	52840399	52840399	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	52840399	52840399	G	A	SNP	ITIH3	ENST00000449956	human	ensembl	74_37	+1	known	missense	c.2033	p.R678H	1.000	NULL	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH3	HGNC	ENSG00000162267				37	0	0	30	13	30.2326
ITIH4	0	genome.wustl.edu	37	3	52860646	52860646	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	52860646	52860646	G	A	SNP	ITIH4	ENST00000266041	human	ensembl	74_37	-1	known	missense	c.541	p.P181S	1.000	NULL	pfam_VIT,pfam_ITI_HC_C,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH4	HGNC	ENSG00000055955				52	0	0	53	4	7.01754
SFMBT1	0	genome.wustl.edu	37	3	52966139	52966139	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	52966139	52966139	A	T	SNP	SFMBT1	ENST00000358080	human	ensembl	74_37	-1	known	missense	c.639	p.D213E	1.000	pfam_Mbt,smart_Mbt,pfscan_Mbt	pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt	-	no_errors	SFMBT1	HGNC	ENSG00000163935				87	0	0	66	7	9.58904
PRKCD	0	genome.wustl.edu	37	3	53222784	53222784	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	53222784	53222784	G	T	SNP	PRKCD	ENST00000330452	human	ensembl	74_37	+1	known	missense	c.1464	p.K488N	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Prot_kin_PKC_delta,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta,prints_DAG/PE-bd,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	PRKCD	HGNC	ENSG00000163932				100	0	0	51	19	27.1429
CACNA1D	0	genome.wustl.edu	37	3	53778828	53778828	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	53778828	53778828	G	A	SNP	CACNA1D	ENST00000288139	human	ensembl	74_37	+1	known	missense	c.3040	p.A1014T	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_LVDCC_a1dsu	-	no_errors	CACNA1D	HGNC	ENSG00000157388				68	0	0	38	11	22.449
IL17RB	0	genome.wustl.edu	37	3	53899038	53899038	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	53899038	53899038	C	T	SNP	IL17RB	ENST00000288167	human	ensembl	74_37	+1	known	silent	c.1212	p.C404	0.241	pfam_SEFIR	pfam_SEFIR	-	no_errors	IL17RB	HGNC	ENSG00000056736				48	0	0	34	15	30.6122
ACTR8	0	genome.wustl.edu	37	3	53905304	53905304	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	53905304	53905304	C	T	SNP	ACTR8	ENST00000335754	human	ensembl	74_37	-1	known	missense	c.1522	p.A508T	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related	-	no_errors	ACTR8	HGNC	ENSG00000113812				117	0	0	98	7	6.66667
CACNA2D3	0	genome.wustl.edu	37	3	54922046	54922046	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	54922046	54922046	C	T	SNP	CACNA2D3	ENST00000288197	human	ensembl	74_37	+1	known	missense	c.2117	p.A706V	1.000	NULL	pfam_VWA_N,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D3	HGNC	ENSG00000157445				104	0	0	78	6	7.14286
LRTM1	0	genome.wustl.edu	37	3	54952504	54952504	+	Silent	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	54952504	54952504	A	G	SNP	LRTM1	ENST00000273286	human	ensembl	74_37	-1	known	silent	c.1020	p.F340	0.351	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRTM1	HGNC	ENSG00000144771				274	0	0	197	53	21.2
CACNA2D3	0	genome.wustl.edu	37	3	55038847	55038847	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	55038847	55038847	C	T	SNP	CACNA2D3	ENST00000288197	human	ensembl	74_37	+1	known	silent	c.2748	p.G916	0.001	NULL	pfam_VWA_N,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D3	HGNC	ENSG00000157445				70	0	0	53	27	33.75
FAM208A	0	genome.wustl.edu	37	3	56675649	56675649	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	56675649	56675649	G	A	SNP	FAM208A	ENST00000355628	human	ensembl	74_37	-1	known	missense	c.2347	p.R783C	0.998	NULL	pfam_DUF3715	-	no_errors	FAM208A	HGNC	ENSG00000163946				114	1	0.869565	90	9	9.09091
IL17RD	0	genome.wustl.edu	37	3	57136541	57136541	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	57136541	57136541	C	T	SNP	IL17RD	ENST00000296318	human	ensembl	74_37	-1	known	silent	c.945	p.T315	0.058	NULL	pfam_SEFIR,superfamily_TIR_dom	-	no_errors	IL17RD	HGNC	ENSG00000144730				55	0	0	42	6	12.5
APPL1	0	genome.wustl.edu	37	3	57293966	57293966	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	57293966	57293966	G	A	SNP	APPL1	ENST00000288266	human	ensembl	74_37	+1	known	missense	c.1577	p.R526H	1.000	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	pfam_PTB/PI_dom,smart_Pleckstrin_homology,smart_PTB/PI_dom,pfscan_Pleckstrin_homology,pfscan_PTB/PI_dom	-	no_errors	APPL1	HGNC	ENSG00000157500				54	0	0	56	11	16.4179
FLNB	0	genome.wustl.edu	37	3	58129201	58129201	+	Silent	SNP	A	A	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	58129201	58129201	A	T	SNP	FLNB	ENST00000295956	human	ensembl	74_37	+1	known	silent	c.5286	p.G1762	0.358	superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNB	HGNC	ENSG00000136068				59	0	0	37	10	21.2766
FEZF2	0	genome.wustl.edu	37	3	62355881	62355881	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	62355881	62355881	G	A	SNP	FEZF2	ENST00000283268	human	ensembl	74_37	-1	known	silent	c.1257	p.C419	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	FEZF2	HGNC	ENSG00000153266				176	0	0	113	37	24.6667
FEZF2	0	genome.wustl.edu	37	3	62355985	62355985	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	62355985	62355985	C	A	SNP	FEZF2	ENST00000283268	human	ensembl	74_37	-1	known	missense	c.1153	p.G385C	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	FEZF2	HGNC	ENSG00000153266				150	0	0	93	29	23.7705
ATXN7	0	genome.wustl.edu	37	3	63965619	63965619	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	63965619	63965619	G	A	SNP	ATXN7	ENST00000398590	human	ensembl	74_37	+1	known	silent	c.528	p.P176	0.002	NULL	pfam_SCA7_dom	-	no_errors	ATXN7	HGNC	ENSG00000163635				98	0	0	85	23	21.2963
ATXN7	0	genome.wustl.edu	37	3	63975975	63975975	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	63975975	63975975	C	T	SNP	ATXN7	ENST00000398590	human	ensembl	74_37	+1	known	silent	c.1485	p.G495	1.000	NULL	pfam_SCA7_dom	-	no_errors	ATXN7	HGNC	ENSG00000163635				71	0	0	36	12	25
PRICKLE2	0	genome.wustl.edu	37	3	64084813	64084813	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	64084813	64084813	C	A	SNP	PRICKLE2	ENST00000295902	human	ensembl	74_37	-1	known	missense	c.2449	p.G817C	0.968	NULL	pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	PRICKLE2	HGNC	ENSG00000163637				90	0	0	65	15	18.75
PRICKLE2	0	genome.wustl.edu	37	3	64084864	64084864	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	64084864	64084864	G	A	SNP	PRICKLE2	ENST00000295902	human	ensembl	74_37	-1	known	missense	c.2398	p.R800C	1.000	NULL	pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	PRICKLE2	HGNC	ENSG00000163637				63	0	0	48	5	9.43396
ADAMTS9	0	genome.wustl.edu	37	3	64641547	64641547	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	64641547	64641547	G	A	SNP	ADAMTS9	ENST00000498707	human	ensembl	74_37	-1	known	missense	c.974	p.A325V	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS9	HGNC	ENSG00000163638				66	0	0	35	13	27.0833
MAGI1	0	genome.wustl.edu	37	3	65342481	65342481	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	65342481	65342481	G	A	SNP	MAGI1	ENST00000402939	human	ensembl	74_37	-1	known	missense	c.3961	p.R1321W	0.003	NULL	pfam_PDZ,pfam_WW_dom,pfam_GK/Ca_channel_bsu,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_PDZ,smart_GK/Ca_channel_bsu,smart_WW_dom,pfscan_PDZ,pfscan_WW_dom,pfscan_Guanylate_kin-like	-	no_errors	MAGI1	HGNC	ENSG00000151276				28	0	0	16	6	27.2727
MAGI1	0	genome.wustl.edu	37	3	65415516	65415516	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	65415516	65415516	C	T	SNP	MAGI1	ENST00000402939	human	ensembl	74_37	-1	known	missense	c.1846	p.V616M	0.975	superfamily_PDZ	pfam_PDZ,pfam_WW_dom,pfam_GK/Ca_channel_bsu,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_PDZ,smart_GK/Ca_channel_bsu,smart_WW_dom,pfscan_PDZ,pfscan_WW_dom,pfscan_Guanylate_kin-like	-	no_errors	MAGI1	HGNC	ENSG00000151276				66	0	0	47	11	18.9655
GRM7	0	genome.wustl.edu	37	3	7188283	7188283	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	7188283	7188283	T	C	SNP	GRM7	ENST00000402647	human	ensembl	74_37	+1	known	missense	c.664	p.S222P	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_GPCR_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_7,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4	-	no_errors	GRM7	HGNC	ENSG00000196277				103	0	0	65	26	28.5714
PDZRN3	0	genome.wustl.edu	37	3	73453360	73453360	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	73453360	73453360	C	T	SNP	PDZRN3	ENST00000263666	human	ensembl	74_37	-1	known	missense	c.1105	p.A369T	1.000	NULL	pfam_PDZ,pfam_Znf_C3HC4_RING-type,superfamily_PDZ,superfamily_TRAF-like,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	PDZRN3	HGNC	ENSG00000121440				95	0	0	70	8	10.2564
CNTN3	0	genome.wustl.edu	37	3	74334502	74334502	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	74334502	74334502	G	A	SNP	CNTN3	ENST00000263665	human	ensembl	74_37	-1	known	silent	c.2658	p.G886	0.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN3	HGNC	ENSG00000113805				169	0	0	97	28	22.4
ROBO2	0	genome.wustl.edu	37	3	77693990	77693990	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	77693990	77693990	C	T	SNP	ROBO2	ENST00000461745	human	ensembl	74_37	+1	known	missense	c.4070	p.A1357V	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO2	HGNC	ENSG00000185008				74	0	0	50	18	26.4706
SSUH2	0	genome.wustl.edu	37	3	8667298	8667298	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	8667298	8667298	C	T	SNP	SSUH2	ENST00000544814	human	ensembl	74_37	-1	known	missense	c.803	p.R268Q	0.004	NULL	superfamily_HSP_DnaJ_Cys-rich_dom	-	no_errors	SSUH2	HGNC	ENSG00000125046				69	0	0	29	13	30.9524
CGGBP1	0	genome.wustl.edu	37	3	88104713	88104713	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	88104713	88104713	G	A	SNP	CGGBP1	ENST00000309534	human	ensembl	74_37	-1	known	silent	c.414	p.G138	1.000	NULL	NULL	-	no_errors	CGGBP1	HGNC	ENSG00000163320				91	0	0	74	18	19.5652
EPHA3	0	genome.wustl.edu	37	3	89259600	89259600	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	89259600	89259600	C	T	SNP	EPHA3	ENST00000336596	human	ensembl	74_37	+1	known	silent	c.744	p.G248	0.000	pirsf_Tyr_kinase_ephrin_rcpt	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA3	HGNC	ENSG00000044524				323	0	0	214	73	25.4355
NSUN3	0	genome.wustl.edu	37	3	93803031	93803031	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	93803031	93803031	A	G	SNP	NSUN3	ENST00000314622	human	ensembl	74_37	+1	known	missense	c.203	p.D68G	0.624	NULL	pfam_Fmu/NOL1/Nop2p,prints_RCMT	-	no_errors	NSUN3	HGNC	ENSG00000178694				100	0	0	61	30	32.967
SETD5	0	genome.wustl.edu	37	3	9476021	9476021	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	9476021	9476021	A	G	SNP	SETD5	ENST00000402198	human	ensembl	74_37	+1	known	missense	c.181	p.I61V	1.000	NULL	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	-	no_errors	SETD5	HGNC	ENSG00000168137				71	0	0	43	17	28.3333
LHFPL4	0	genome.wustl.edu	37	3	9547876	9547876	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	9547876	9547876	C	T	SNP	LHFPL4	ENST00000287585	human	ensembl	74_37	-1	known	missense	c.418	p.V140I	1.000	pfam_Lipome_HGMIC_fus_partner-like	pfam_Lipome_HGMIC_fus_partner-like	-	no_errors	LHFPL4	HGNC	ENSG00000156959				50	0	0	30	12	28.5714
LHFPL4	0	genome.wustl.edu	37	3	9594078	9594078	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	9594078	9594078	C	T	SNP	LHFPL4	ENST00000287585	human	ensembl	74_37	-1	known	missense	c.286	p.A96T	1.000	pfam_Lipome_HGMIC_fus_partner-like	pfam_Lipome_HGMIC_fus_partner-like	-	no_errors	LHFPL4	HGNC	ENSG00000156959				41	0	0	20	7	25.9259
EPHA6	0	genome.wustl.edu	37	3	96706649	96706649	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	96706649	96706649	C	T	SNP	EPHA6	ENST00000389672	human	ensembl	74_37	+1	known	missense	c.926	p.A309V	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA6	HGNC	ENSG00000080224				225	0	0	195	11	5.33981
MINA	0	genome.wustl.edu	37	3	97686148	97686148	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	97686148	97686148	C	T	SNP	MINA	ENST00000333396	human	ensembl	74_37	-1	known	missense	c.290	p.G97E	1.000	pfam_JmjC_dom	pfam_JmjC_dom,pfscan_JmjC_dom	-	no_errors	MINA	HGNC	ENSG00000170854				349	0	0	213	82	27.7966
TTLL3	0	genome.wustl.edu	37	3	9857762	9857762	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	9857762	9857762	G	A	SNP	TTLL3	ENST00000427220	human	ensembl	74_37	+1	known	missense	c.320	p.R107H	1.000	NULL	superfamily_Scorpion_toxin-like	-	no_errors	TTLL3	HGNC	ENSG00000214021				13	0	0	12	5	29.4118
CRELD1	0	genome.wustl.edu	37	3	9982689	9982689	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	9982689	9982689	G	A	SNP	CRELD1	ENST00000326434	human	ensembl	74_37	+1	known	missense	c.616	p.A206T	0.932	superfamily_Growth_fac_rcpt_N_dom	pfam_DUF3456,pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_Furin_repeat,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	CRELD1	HGNC	ENSG00000163703				38	0	0	24	13	35.1351
MTTP	0	genome.wustl.edu	37	4	100529984	100529984	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	100529984	100529984	G	A	SNP	MTTP	ENST00000265517	human	ensembl	74_37	+1	known	missense	c.1619	p.R540H	1.000	pfam_Lipid_transpt_N,superfamily_Vitellinogen_superhlx,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	pfam_Lipid_transpt_N,superfamily_Vitellinogen_superhlx,superfamily_Lipid_transp_b-sht_shell,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	MTTP	HGNC	ENSG00000138823				97	0	0	78	36	31.5789
PPP3CA	0	genome.wustl.edu	37	4	101947170	101947170	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	101947170	101947170	G	T	SNP	PPP3CA	ENST00000394854	human	ensembl	74_37	-1	known	missense	c.1418	p.A473D	1.000	NULL	pfam_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP3CA	HGNC	ENSG00000138814				131	0	0	107	40	27.2109
SLC39A8	0	genome.wustl.edu	37	4	103228683	103228683	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	103228683	103228683	C	A	SNP	SLC39A8	ENST00000356736	human	ensembl	74_37	-1	known	missense	c.462	p.K154N	1.000	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A8	HGNC	ENSG00000138821				233	0	0	141	82	36.7713
UBE2D3	0	genome.wustl.edu	37	4	103789880	103789880	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	103789880	103789880	G	T	SNP	UBE2D3	ENST00000357194	human	ensembl	74_37	-1	known	missense	c.22	p.L8I	0.965	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2D3	HGNC	ENSG00000109332				149	0	0	114	31	21.3793
CENPE	0	genome.wustl.edu	37	4	104067167	104067167	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	104067167	104067167	G	T	SNP	CENPE	ENST00000265148	human	ensembl	74_37	-1	known	missense	c.4232	p.P1411H	0.092	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,superfamily_STAT_TF_coiled-coil,superfamily_Signal_recog_particl_SRP54_hlx,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	CENPE	HGNC	ENSG00000138778				141	0	0	82	27	24.7706
TACR3	0	genome.wustl.edu	37	4	104640294	104640294	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	104640294	104640294	G	A	SNP	TACR3	ENST00000304883	human	ensembl	74_37	-1	known	missense	c.539	p.A180V	0.998	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_NPY_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_NK3_rcpt,prints_Neurokn_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt,prints_NK1_rcpt	-	no_errors	TACR3	HGNC	ENSG00000169836				47	0	0	36	18	33.3333
TACR3	0	genome.wustl.edu	37	4	104640738	104640738	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	104640738	104640738	G	A	SNP	TACR3	ENST00000304883	human	ensembl	74_37	-1	known	missense	c.95	p.A32V	0.030	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_NK3_rcpt,prints_Neurokn_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt,prints_NK1_rcpt	-	no_errors	TACR3	HGNC	ENSG00000169836				19	0	0	22	7	24.1379
ARHGEF38	0	genome.wustl.edu	37	4	106566427	106566427	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	106566427	106566427	G	A	SNP	ARHGEF38	ENST00000420470	human	ensembl	74_37	+1	putative	missense	c.757	p.E253K	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_BAR_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF38	HGNC	ENSG00000236699				37	0	0	23	11	32.3529
GSTCD	0	genome.wustl.edu	37	4	106639056	106639056	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	106639056	106639056	C	T	SNP	GSTCD	ENST00000360505	human	ensembl	74_37	+1	known	nonsense	c.286	p.R96*	0.023	NULL	pfam_rRNA_ssu_MeTfrase_G,pfam_Small_mtfrase_dom,superfamily_Glutathione-S-Trfase_C-like	-	no_errors	GSTCD	HGNC	ENSG00000138780				146	0	0	123	9	6.81818
TBCK	0	genome.wustl.edu	37	4	107154146	107154146	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	107154146	107154146	G	A	SNP	TBCK	ENST00000273980	human	ensembl	74_37	-1	known	missense	c.1588	p.R530C	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Rhodanese-like_dom,superfamily_Kinase-like_dom,superfamily_Rab-GTPase-TBC_dom,superfamily_Rhodanese-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Rab-GTPase-TBC_dom,smart_Rhodanese-like_dom,pfscan_Rab-GTPase-TBC_dom,pfscan_Prot_kinase_dom,pfscan_Rhodanese-like_dom	-	no_errors	TBCK	HGNC	ENSG00000145348				144	0	0	99	37	27.2059
CYP2U1	0	genome.wustl.edu	37	4	108871478	108871478	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	108871478	108871478	G	A	SNP	CYP2U1	ENST00000332884	human	ensembl	74_37	+1	known	missense	c.1534	p.A512T	0.067	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_B,prints_Cyt_P450_E_grp-I_CYP2D-like	-	no_errors	CYP2U1	HGNC	ENSG00000155016				103	0	0	80	5	5.88235
ETNPPL	0	genome.wustl.edu	37	4	109663750	109663750	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	109663750	109663750	T	C	SNP	ETNPPL	ENST00000296486	human	ensembl	74_37	-1	known	missense	c.1390	p.I464V	0.000	NULL	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase	-	no_errors	ETNPPL	HGNC	ENSG00000164089				101	0	0	70	21	23.0769
ETNPPL	0	genome.wustl.edu	37	4	109681385	109681385	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	109681385	109681385	T	C	SNP	ETNPPL	ENST00000296486	human	ensembl	74_37	-1	known	missense	c.134	p.N45S	0.962	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase	-	no_errors	ETNPPL	HGNC	ENSG00000164089				125	0	0	88	31	26.0504
COL25A1	0	genome.wustl.edu	37	4	109858963	109858963	+	Splice_Site	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	109858963	109858963	C	T	SNP	COL25A1	ENST00000399132	human	ensembl	74_37	-1	known	splice_site	c.708+1	e10+1	1.000	-	-	-	no_errors	COL25A1	HGNC	ENSG00000188517				78	0	0	63	18	22.2222
SEC24B	0	genome.wustl.edu	37	4	110442692	110442692	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	110442692	110442692	C	T	SNP	SEC24B	ENST00000265175	human	ensembl	74_37	+1	known	silent	c.2418	p.G806	1.000	pfam_Sec23/24_trunk_dom	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC24B	HGNC	ENSG00000138802				59	0	0	37	17	31.4815
ENPEP	0	genome.wustl.edu	37	4	111397641	111397641	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	111397641	111397641	C	T	SNP	ENPEP	ENST00000265162	human	ensembl	74_37	+1	known	missense	c.71	p.A24V	0.014	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ENPEP	HGNC	ENSG00000138792				136	1	0.729927	82	32	28.0702
ENPEP	0	genome.wustl.edu	37	4	111434596	111434596	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	111434596	111434596	T	C	SNP	ENPEP	ENST00000265162	human	ensembl	74_37	+1	known	missense	c.1334	p.V445A	0.998	pfam_Peptidase_M1_N	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ENPEP	HGNC	ENSG00000138792				141	0	0	126	7	5.26316
ENPEP	0	genome.wustl.edu	37	4	111470515	111470515	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	111470515	111470515	G	A	SNP	ENPEP	ENST00000265162	human	ensembl	74_37	+1	known	missense	c.2165	p.G722D	0.000	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ENPEP	HGNC	ENSG00000138792				51	0	0	58	6	9.375
AP1AR	0	genome.wustl.edu	37	4	113174397	113174397	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	113174397	113174397	G	A	SNP	AP1AR	ENST00000274000	human	ensembl	74_37	+1	known	silent	c.117	p.E39	1.000	NULL	NULL	-	no_errors	AP1AR	HGNC	ENSG00000138660				80	0	0	56	6	9.67742
HS3ST1	0	genome.wustl.edu	37	4	11401090	11401090	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	11401090	11401090	G	A	SNP	HS3ST1	ENST00000002596	human	ensembl	74_37	-1	known	silent	c.540	p.R180	0.047	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	HS3ST1	HGNC	ENSG00000002587				38	0	0	32	23	41.8182
HS3ST1	0	genome.wustl.edu	37	4	11401252	11401252	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	11401252	11401252	C	T	SNP	HS3ST1	ENST00000002596	human	ensembl	74_37	-1	known	silent	c.378	p.S126	0.988	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	HS3ST1	HGNC	ENSG00000002587				61	0	0	30	9	23.0769
ANK2	0	genome.wustl.edu	37	4	114278694	114278694	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	114278694	114278694	G	A	SNP	ANK2	ENST00000357077	human	ensembl	74_37	+1	known	missense	c.8920	p.A2974T	0.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362				250	0	0	188	16	7.84314
ANK2	0	genome.wustl.edu	37	4	114278954	114278954	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	114278954	114278954	A	C	SNP	ANK2	ENST00000357077	human	ensembl	74_37	+1	known	missense	c.9180	p.K3060N	0.999	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362				96	0	0	59	30	33.7079
UGT8	0	genome.wustl.edu	37	4	115544223	115544223	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	115544223	115544223	G	A	SNP	UGT8	ENST00000310836	human	ensembl	74_37	+1	known	missense	c.187	p.A63T	0.684	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT8	HGNC	ENSG00000174607				67	0	0	52	17	24.6377
NDST4	0	genome.wustl.edu	37	4	115997904	115997904	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	115997904	115997904	C	T	SNP	NDST4	ENST00000264363	human	ensembl	74_37	-1	known	missense	c.289	p.A97T	1.000	pfam_Heparan_SO4_deacetylase	pfam_Heparan_SO4_deacetylase,pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	NDST4	HGNC	ENSG00000138653				101	0	0	53	20	27.3973
SNHG8	0	genome.wustl.edu	37	4	119200261	119200261	+	Splice_Site	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	119200261	119200261	G	A	SNP	SNHG8	ENST00000602483	human	ensembl	74_37	+1	known	splice_site	c.NULL	NULL	0.010	-	-	-	no_errors	SNHG8	HGNC	ENSG00000269893				37	0	0	16	11	40.7407
NDNF	0	genome.wustl.edu	37	4	121958554	121958554	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	121958554	121958554	G	A	SNP	NDNF	ENST00000379692	human	ensembl	74_37	-1	known	missense	c.572	p.T191M	1.000	pfam_DUF2369,superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_DUF2369,superfamily_Fibronectin_type3,smart_Fibronectin_type3	-	no_errors	NDNF	HGNC	ENSG00000173376				106	0	0	108	8	6.89655
QRFPR	0	genome.wustl.edu	37	4	122257980	122257980	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	122257980	122257980	C	T	SNP	QRFPR	ENST00000394427	human	ensembl	74_37	-1	known	nonsense	c.543	p.W181*	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_NPY_rcpt,prints_NPFF_rcpt	-	no_errors	QRFPR	HGNC	ENSG00000186867				339	0	0	266	18	6.33803
QRFPR	0	genome.wustl.edu	37	4	122301573	122301573	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	122301573	122301573	C	T	SNP	QRFPR	ENST00000394427	human	ensembl	74_37	-1	known	missense	c.230	p.R77H	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_NPY_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_NPY_rcpt,prints_NPFF_rcpt	-	no_errors	QRFPR	HGNC	ENSG00000186867				62	0	0	40	20	33.3333
TRPC3	0	genome.wustl.edu	37	4	122853627	122853627	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	122853627	122853627	C	T	SNP	TRPC3	ENST00000379645	human	ensembl	74_37	-1	known	silent	c.786	p.P262	0.978	superfamily_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,pfam_PKD1_2_channel,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPC3_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC3	HGNC	ENSG00000138741				41	0	0	24	6	20
KIAA1109	0	genome.wustl.edu	37	4	123140711	123140711	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	123140711	123140711	C	T	SNP	KIAA1109	ENST00000264501	human	ensembl	74_37	+1	known	missense	c.2464	p.R822C	0.998	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688				85	0	0	50	22	30.5556
KIAA1109	0	genome.wustl.edu	37	4	123161120	123161120	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	123161120	123161120	A	G	SNP	KIAA1109	ENST00000264501	human	ensembl	74_37	+1	known	missense	c.4283	p.Y1428C	1.000	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688				85	0	0	71	5	6.57895
FAT4	0	genome.wustl.edu	37	4	126237960	126237960	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	126237960	126237960	G	A	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	missense	c.394	p.A132T	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				23	0	0	11	5	31.25
FAT4	0	genome.wustl.edu	37	4	126238572	126238572	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	126238572	126238572	C	T	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	missense	c.1006	p.R336C	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				43	0	0	30	11	26.8293
FAT4	0	genome.wustl.edu	37	4	126240523	126240523	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	126240523	126240523	T	C	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	missense	c.2957	p.V986A	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				96	0	0	66	7	9.58904
FAT4	0	genome.wustl.edu	37	4	126242112	126242112	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	126242112	126242112	A	G	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	missense	c.4546	p.T1516A	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				199	0	0	163	11	6.32184
FAT4	0	genome.wustl.edu	37	4	126242602	126242602	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	126242602	126242602	G	A	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	missense	c.5036	p.R1679H	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				127	0	0	81	32	28.3186
FAT4	0	genome.wustl.edu	37	4	126369981	126369981	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	126369981	126369981	G	A	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	missense	c.7810	p.A2604T	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				31	0	0	26	6	18.75
FAT4	0	genome.wustl.edu	37	4	126411605	126411605	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	126411605	126411605	C	A	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	missense	c.13628	p.P4543Q	0.897	NULL	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				162	0	0	111	12	9.7561
FAT4	0	genome.wustl.edu	37	4	126412402	126412402	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	126412402	126412402	G	T	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	missense	c.14425	p.D4809Y	1.000	NULL	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				93	0	0	59	7	10.6061
SCLT1	0	genome.wustl.edu	37	4	129880822	129880822	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	129880822	129880822	T	C	SNP	SCLT1	ENST00000281142	human	ensembl	74_37	-1	known	missense	c.980	p.Y327C	0.991	NULL	NULL	-	no_errors	SCLT1	HGNC	ENSG00000151466				72	0	0	46	12	20.6897
MAEA	0	genome.wustl.edu	37	4	1326598	1326598	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	1326598	1326598	G	A	SNP	MAEA	ENST00000303400	human	ensembl	74_37	+1	known	missense	c.710	p.R237H	1.000	smart_CRA_dom	smart_LisH_dimerisation,smart_CTLH_C,smart_CRA_dom,pfscan_LisH_dimerisation,pfscan_CTLH_C	-	no_errors	MAEA	HGNC	ENSG00000090316				17	0	0	19	5	20.8333
MAEA	0	genome.wustl.edu	37	4	1333033	1333033	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	1333033	1333033	G	A	SNP	MAEA	ENST00000512289	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	MAEA	HGNC	ENSG00000090316				21	0	0	6	4	40
PCDH10	0	genome.wustl.edu	37	4	134072314	134072314	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	134072314	134072314	C	T	SNP	PCDH10	ENST00000264360	human	ensembl	74_37	+1	known	missense	c.1019	p.A340V	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650				77	0	0	73	23	23.9583
PCDH10	0	genome.wustl.edu	37	4	134073044	134073044	+	Silent	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	134073044	134073044	G	T	SNP	PCDH10	ENST00000264360	human	ensembl	74_37	+1	known	silent	c.1749	p.G583	1.000	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650				34	0	0	18	5	21.7391
PCDH10	0	genome.wustl.edu	37	4	134073220	134073220	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	134073220	134073220	G	A	SNP	PCDH10	ENST00000264360	human	ensembl	74_37	+1	known	missense	c.1925	p.R642H	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650				40	0	0	20	5	20
PCDH10	0	genome.wustl.edu	37	4	134073864	134073864	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	134073864	134073864	G	A	SNP	PCDH10	ENST00000264360	human	ensembl	74_37	+1	known	missense	c.2569	p.V857I	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650				54	0	0	29	12	29.2683
UVSSA	0	genome.wustl.edu	37	4	1347064	1347064	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	1347064	1347064	C	T	SNP	UVSSA	ENST00000389851	human	ensembl	74_37	+1	known	missense	c.797	p.A266V	0.000	NULL	pfam_DUF2043,superfamily_ENTH_VHS	-	no_errors	UVSSA	HGNC	ENSG00000163945				21	0	0	11	5	31.25
BOD1L1	0	genome.wustl.edu	37	4	13603266	13603266	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	13603266	13603266	C	T	SNP	BOD1L1	ENST00000040738	human	ensembl	74_37	-1	known	missense	c.5258	p.R1753H	0.002	NULL	NULL	-	no_errors	BOD1L1	HGNC	ENSG00000038219				224	0	0	160	55	25.5814
BOD1L1	0	genome.wustl.edu	37	4	13603592	13603592	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	13603592	13603592	G	A	SNP	BOD1L1	ENST00000040738	human	ensembl	74_37	-1	known	silent	c.4932	p.S1644	0.001	NULL	NULL	-	no_errors	BOD1L1	HGNC	ENSG00000038219				219	0	0	153	45	22.7273
PCDH18	0	genome.wustl.edu	37	4	138452423	138452423	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	138452423	138452423	C	T	SNP	PCDH18	ENST00000344876	human	ensembl	74_37	-1	known	missense	c.820	p.D274N	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH18	HGNC	ENSG00000189184				107	0	0	66	7	9.58904
CRIPAK	0	genome.wustl.edu	37	4	1389402	1389402	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	1389402	1389402	C	T	SNP	CRIPAK	ENST00000324803	human	ensembl	74_37	+1	known	missense	c.1103	p.A368V	0.009	NULL	smart_Post-SET_dom	-	no_errors	CRIPAK	HGNC	ENSG00000179979				229	1	0.434783	154	35	18.5185
NAA15	0	genome.wustl.edu	37	4	140262203	140262203	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	140262203	140262203	C	T	SNP	NAA15	ENST00000296543	human	ensembl	74_37	+1	known	nonsense	c.382	p.R128*	1.000	pirsf_NatA_aux_su,pfscan_TPR-contain_dom	pfam_NatA_aux_su,smart_TPR_repeat,pirsf_NatA_aux_su,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	NAA15	HGNC	ENSG00000164134				100	0	0	93	8	7.92079
NAA15	0	genome.wustl.edu	37	4	140264015	140264015	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	140264015	140264015	G	A	SNP	NAA15	ENST00000296543	human	ensembl	74_37	+1	known	silent	c.438	p.A146	0.849	pirsf_NatA_aux_su,pfscan_TPR-contain_dom	pfam_NatA_aux_su,smart_TPR_repeat,pirsf_NatA_aux_su,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	NAA15	HGNC	ENSG00000164134				137	0	0	124	7	5.34351
MAML3	0	genome.wustl.edu	37	4	140640939	140640939	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	140640939	140640939	G	A	SNP	MAML3	ENST00000509479	human	ensembl	74_37	-1	known	silent	c.2955	p.G985	0.570	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML3	HGNC	ENSG00000196782				35	0	0	28	4	12.5
RNF150	0	genome.wustl.edu	37	4	141888992	141888992	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	141888992	141888992	G	A	SNP	RNF150	ENST00000515673	human	ensembl	74_37	-1	known	missense	c.520	p.P174S	1.000	pfam_Protease-assoc_domain	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF150	HGNC	ENSG00000170153				127	0	0	104	6	5.45455
GAB1	0	genome.wustl.edu	37	4	144359168	144359168	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	144359168	144359168	G	A	SNP	GAB1	ENST00000262995	human	ensembl	74_37	+1	known	missense	c.610	p.A204T	0.998	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	GAB1	HGNC	ENSG00000109458				98	0	0	52	18	25.7143
HHIP	0	genome.wustl.edu	37	4	145659003	145659003	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	145659003	145659003	G	A	SNP	HHIP	ENST00000296575	human	ensembl	74_37	+1	known	missense	c.1997	p.C666Y	1.000	smart_EG-like_dom,pfscan_EG-like_dom	pfam_Folate_rcpt-like,superfamily_Quinoprot_gluc/sorb_DH,smart_EG-like_dom,pfscan_EG-like_dom	-	no_errors	HHIP	HGNC	ENSG00000164161				106	0	0	86	8	8.51064
SMAD1	0	genome.wustl.edu	37	4	146461063	146461063	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	146461063	146461063	G	A	SNP	SMAD1	ENST00000302085	human	ensembl	74_37	+1	known	missense	c.508	p.A170T	1.000	NULL	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD1	HGNC	ENSG00000170365				58	0	0	51	15	22.7273
POU4F2	0	genome.wustl.edu	37	4	147561859	147561859	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	147561859	147561859	G	A	SNP	POU4F2	ENST00000281321	human	ensembl	74_37	+1	known	missense	c.1129	p.A377T	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU	-	no_errors	POU4F2	HGNC	ENSG00000151615				97	0	0	54	6	10
NR3C2	0	genome.wustl.edu	37	4	149075716	149075716	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	149075716	149075716	G	A	SNP	NR3C2	ENST00000355292	human	ensembl	74_37	-1	known	missense	c.2363	p.A788V	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR3C2	HGNC	ENSG00000151623				187	0	0	104	40	27.7778
LRBA	0	genome.wustl.edu	37	4	151336636	151336636	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	151336636	151336636	G	A	SNP	LRBA	ENST00000357115	human	ensembl	74_37	-1	known	missense	c.7181	p.P2394L	1.000	pfam_BEACH_dom,superfamily_BEACH_dom,pfscan_BEACH_dom	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl_sf,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom	-	no_errors	LRBA	HGNC	ENSG00000198589				71	0	0	54	6	10
PET112	0	genome.wustl.edu	37	4	152679946	152679946	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	152679946	152679946	G	A	SNP	PET112	ENST00000263985	human	ensembl	74_37	-1	known	missense	c.305	p.A102V	1.000	pfam_Asn/Gln-tRNA_Trfase_suB/E_cat,tigrfam_Apn/Gln-ADT_bsu	pfam_Asn/Gln-tRNA_Trfase_suB/E_cat,pfam_Asn/Gln_amidotransferase,superfamily_Asn/Gln_tRNA_amidoTrfrase-rel,smart_Asn/Gln_amidotransferase,tigrfam_Apn/Gln-ADT_bsu	-	no_errors	PET112	HGNC	ENSG00000059691				204	0	0	155	61	28.2407
PET112	0	genome.wustl.edu	37	4	152682034	152682034	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	152682034	152682034	G	A	SNP	PET112	ENST00000263985	human	ensembl	74_37	-1	known	missense	c.101	p.S34F	0.002	NULL	pfam_Asn/Gln-tRNA_Trfase_suB/E_cat,pfam_Asn/Gln_amidotransferase,superfamily_Asn/Gln_tRNA_amidoTrfrase-rel,smart_Asn/Gln_amidotransferase,tigrfam_Apn/Gln-ADT_bsu	-	no_errors	PET112	HGNC	ENSG00000059691				37	0	0	30	10	25
TRIM2	0	genome.wustl.edu	37	4	154215584	154215584	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	154215584	154215584	C	T	SNP	TRIM2	ENST00000338700	human	ensembl	74_37	+1	known	missense	c.733	p.R245C	1.000	smart_Bbox_C	pfam_NHL_repeat,pfam_Filamin/ABP280_repeat-like,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_Ig_E-set,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Filamin,pfscan_Filamin/ABP280_repeat-like,pfscan_NHL_repeat_subgr,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM2	HGNC	ENSG00000109654				83	0	0	90	6	6.25
PLRG1	0	genome.wustl.edu	37	4	155460278	155460278	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	155460278	155460278	G	T	SNP	PLRG1	ENST00000393905	human	ensembl	74_37	-1	known	missense	c.1130	p.A377D	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PLRG1	HGNC	ENSG00000171566				119	0	0	76	14	15.5556
LRAT	0	genome.wustl.edu	37	4	155665742	155665742	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	155665742	155665742	G	A	SNP	LRAT	ENST00000336356	human	ensembl	74_37	+1	known	silent	c.264	p.T88	0.090	NULL	pfam_LRAT-like_dom	-	no_errors	LRAT	HGNC	ENSG00000121207				32	0	0	15	7	31.8182
GUCY1A3	0	genome.wustl.edu	37	4	156618218	156618218	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	156618218	156618218	A	C	SNP	GUCY1A3	ENST00000296518	human	ensembl	74_37	+1	known	missense	c.199	p.S67R	1.000	NULL	pfam_A/G_cyclase,pfam_Haem_no_assoc-bd,pfam_Heme_NO-bd,superfamily_A/G_cyclase,superfamily_NO_sig/Golgi_transp_ligand-bd,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	GUCY1A3	HGNC	ENSG00000164116				127	0	0	102	8	7.27273
GRIA2	0	genome.wustl.edu	37	4	158254497	158254497	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	158254497	158254497	C	T	SNP	GRIA2	ENST00000264426	human	ensembl	74_37	+1	known	missense	c.1147	p.P383S	1.000	superfamily_Peripla_BP_I	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA2	HGNC	ENSG00000120251				34	0	0	26	8	23.5294
FNIP2	0	genome.wustl.edu	37	4	159789517	159789517	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	159789517	159789517	G	A	SNP	FNIP2	ENST00000379346	human	ensembl	74_37	+1	known	missense	c.1798	p.A600T	1.000	NULL	NULL	-	no_errors	FNIP2	HGNC	ENSG00000052795				88	0	0	62	15	19.4805
FNIP2	0	genome.wustl.edu	37	4	159789546	159789546	+	Silent	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	159789546	159789546	A	G	SNP	FNIP2	ENST00000379346	human	ensembl	74_37	+1	known	silent	c.1827	p.T609	0.000	NULL	NULL	-	no_errors	FNIP2	HGNC	ENSG00000052795				89	0	0	47	24	33.8028
RAPGEF2	0	genome.wustl.edu	37	4	160265202	160265202	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	160265202	160265202	G	A	SNP	RAPGEF2	ENST00000264431	human	ensembl	74_37	+1	known	missense	c.2786	p.R929Q	1.000	superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-assoc,pfam_Ras-like_Gua-exchang_fac_N,pfam_PDZ,pfam_cNMP-bd_dom,superfamily_Ras_GEF_dom,superfamily_PDZ,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ras-like_Gua-exchang_fac_N,smart_PDZ,smart_Ras-assoc,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_PDZ,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF2	HGNC	ENSG00000109756				83	0	0	69	29	29.5918
RAPGEF2	0	genome.wustl.edu	37	4	160275010	160275010	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	160275010	160275010	C	T	SNP	RAPGEF2	ENST00000264431	human	ensembl	74_37	+1	known	missense	c.3980	p.A1327V	1.000	NULL	pfam_RasGRF_CDC25,pfam_Ras-assoc,pfam_Ras-like_Gua-exchang_fac_N,pfam_PDZ,pfam_cNMP-bd_dom,superfamily_Ras_GEF_dom,superfamily_PDZ,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ras-like_Gua-exchang_fac_N,smart_PDZ,smart_Ras-assoc,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_PDZ,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF2	HGNC	ENSG00000109756				102	0	0	69	6	8
TAPT1-AS1	0	genome.wustl.edu	37	4	16258210	16258210	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	16258210	16258210	G	A	SNP	TAPT1-AS1	ENST00000570786	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	TAPT1-AS1	HGNC	ENSG00000263327				17	0	0	8	8	50
FSTL5	0	genome.wustl.edu	37	4	163032431	163032431	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	163032431	163032431	G	A	SNP	FSTL5	ENST00000306100	human	ensembl	74_37	-1	known	nonsense	c.118	p.R40*	0.999	NULL	pfam_Ig_I-set,pfam_Kazal_dom,pfam_Ig_V-set,smart_Kazal_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_EF_hand_dom,pfscan_Ig-like_dom	-	no_errors	FSTL5	HGNC	ENSG00000168843				134	0	0	89	30	25.2101
TKTL2	0	genome.wustl.edu	37	4	164393491	164393491	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	164393491	164393491	C	T	SNP	TKTL2	ENST00000280605	human	ensembl	74_37	-1	known	missense	c.1396	p.A466T	1.000	pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd	pfam_Transketolase_N,pfam_Transketolase-like_Pyr-bd,pfam_Transketolase_C,pfam_DH_E1,superfamily_Transketo_C/Pyr-ferredox_oxred,smart_Transketolase-like_Pyr-bd	-	no_errors	TKTL2	HGNC	ENSG00000151005				127	1	0.78125	111	11	9.01639
TKTL2	0	genome.wustl.edu	37	4	164393888	164393888	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	164393888	164393888	G	A	SNP	TKTL2	ENST00000280605	human	ensembl	74_37	-1	known	silent	c.999	p.G333	0.124	pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd	pfam_Transketolase_N,pfam_Transketolase-like_Pyr-bd,pfam_Transketolase_C,pfam_DH_E1,superfamily_Transketo_C/Pyr-ferredox_oxred,smart_Transketolase-like_Pyr-bd	-	no_errors	TKTL2	HGNC	ENSG00000151005				161	0	0	105	24	18.6047
TKTL2	0	genome.wustl.edu	37	4	164394215	164394215	+	Silent	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	164394215	164394215	G	T	SNP	TKTL2	ENST00000280605	human	ensembl	74_37	-1	known	silent	c.672	p.A224	0.153	pfam_Transketolase_N,pfam_DH_E1	pfam_Transketolase_N,pfam_Transketolase-like_Pyr-bd,pfam_Transketolase_C,pfam_DH_E1,superfamily_Transketo_C/Pyr-ferredox_oxred,smart_Transketolase-like_Pyr-bd	-	no_errors	TKTL2	HGNC	ENSG00000151005				106	0	0	57	16	21.9178
TMA16	0	genome.wustl.edu	37	4	164435266	164435266	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	164435266	164435266	A	C	SNP	TMA16	ENST00000358572	human	ensembl	74_37	+1	known	missense	c.195	p.Q65H	0.361	pfam_Tma16	pfam_Tma16	-	no_errors	TMA16	HGNC	ENSG00000198498				78	0	0	84	6	6.66667
TRIM60	0	genome.wustl.edu	37	4	165962417	165962417	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	165962417	165962417	C	T	SNP	TRIM60	ENST00000341062	human	ensembl	74_37	+1	known	missense	c.1193	p.A398V	0.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,pfam_Znf_B-box,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM60	HGNC	ENSG00000176979				108	0	0	109	8	6.83761
PALLD	0	genome.wustl.edu	37	4	169433100	169433100	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	169433100	169433100	A	G	SNP	PALLD	ENST00000261509	human	ensembl	74_37	+1	known	missense	c.445	p.S149G	0.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PALLD	HGNC	ENSG00000129116				76	0	0	50	20	28.5714
MFAP3L	0	genome.wustl.edu	37	4	170913308	170913308	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	170913308	170913308	C	T	SNP	MFAP3L	ENST00000361618	human	ensembl	74_37	-1	known	missense	c.451	p.V151I	0.997	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MFAP3L	HGNC	ENSG00000198948				100	0	0	69	18	20.6897
LAP3	0	genome.wustl.edu	37	4	17586688	17586688	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	17586688	17586688	G	A	SNP	LAP3	ENST00000226299	human	ensembl	74_37	+1	known	silent	c.633	p.T211	0.961	pfam_Peptidase_M17_C	pfam_Peptidase_M17_C,pfam_Peptidase_M17_N,prints_Leucine_aapep/pepB	-	no_errors	LAP3	HGNC	ENSG00000002549				151	0	0	112	8	6.66667
WDR17	0	genome.wustl.edu	37	4	177041100	177041100	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	177041100	177041100	G	A	SNP	WDR17	ENST00000280190	human	ensembl	74_37	+1	known	nonsense	c.462	p.W154*	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR17	HGNC	ENSG00000150627				153	0	0	110	30	21.4286
ASB5	0	genome.wustl.edu	37	4	177136833	177136833	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	177136833	177136833	C	T	SNP	ASB5	ENST00000296525	human	ensembl	74_37	-1	known	missense	c.908	p.S303N	1.000	pfam_SOCS_C,smart_SOCS_C,pfscan_SOCS_C	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	-	no_errors	ASB5	HGNC	ENSG00000164122				67	0	0	44	17	27.8689
NEIL3	0	genome.wustl.edu	37	4	178283618	178283618	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	178283618	178283618	G	A	SNP	NEIL3	ENST00000264596	human	ensembl	74_37	+1	known	missense	c.1811	p.G604E	1.000	NULL	pfam_Znf_GRF,pfam_DNA_glyclase/AP_lyase_DNA-bd,pfam_Znf_RanBP2,superfamily_Ribosomal_S13-like_H2TH,superfamily_DNA_glycosylase/AP_lyase_cat,smart_Znf_RanBP2,pfscan_Znf_RanBP2,pfscan_Znf_DNA_glyclase/AP_lyase,pfscan_DNA_glycosylase/AP_lyase_cat	-	no_errors	NEIL3	HGNC	ENSG00000109674				61	0	0	41	4	8.88889
TENM3	0	genome.wustl.edu	37	4	183245190	183245190	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	183245190	183245190	G	A	SNP	TENM3	ENST00000406950	human	ensembl	74_37	+1	known	missense	c.17	p.R6H	0.993	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Cyt_c-like_dom,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM3	HGNC	ENSG00000218336				37	0	0	23	10	30.303
TENM3	0	genome.wustl.edu	37	4	183603050	183603050	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	183603050	183603050	A	G	SNP	TENM3	ENST00000406950	human	ensembl	74_37	+1	known	missense	c.1918	p.N640D	1.000	smart_EG-like_dom,pfscan_EG-like_dom	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Cyt_c-like_dom,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM3	HGNC	ENSG00000218336				36	0	0	39	6	13.3333
RWDD4	0	genome.wustl.edu	37	4	184567670	184567670	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	184567670	184567670	G	C	SNP	RWDD4	ENST00000326397	human	ensembl	74_37	-1	known	missense	c.502	p.R168G	1.000	NULL	pfam_RWD-domain,superfamily_UBQ-conjugating_enzyme/RWD,smart_RWD-domain,pfscan_RWD-domain	-	no_errors	RWDD4	HGNC	ENSG00000182552				107	0	0	127	12	8.63309
ENPP6	0	genome.wustl.edu	37	4	185039015	185039015	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	185039015	185039015	C	T	SNP	ENPP6	ENST00000296741	human	ensembl	74_37	-1	known	missense	c.572	p.R191H	1.000	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	ENPP6	HGNC	ENSG00000164303				45	0	0	33	8	19.5122
IRF2	0	genome.wustl.edu	37	4	185339814	185339814	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	185339814	185339814	G	A	SNP	IRF2	ENST00000393593	human	ensembl	74_37	-1	known	missense	c.236	p.A79V	1.000	pfam_Interferon_reg_fact_DNA-bd_dom,smart_Interferon_reg_fact_DNA-bd_dom,pirsf_Interferon_reg_fac-1/2,prints_Interferon_reg_fact_DNA-bd_dom	pfam_Interferon_reg_fact_DNA-bd_dom,smart_Interferon_reg_fact_DNA-bd_dom,pirsf_Interferon_reg_fac-1/2,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF2	HGNC	ENSG00000168310				59	0	0	32	16	33.3333
HELT	0	genome.wustl.edu	37	4	185941873	185941873	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	185941873	185941873	G	A	SNP	HELT	ENST00000338875	human	ensembl	74_37	+1	known	missense	c.931	p.A311T	0.851	NULL	pfam_bHLH_dom,pfam_Orange,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_Orange,pfscan_bHLH_dom	-	no_errors	HELT	HGNC	ENSG00000187821				22	0	0	15	3	16.6667
LRP2BP	0	genome.wustl.edu	37	4	186288347	186288347	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	186288347	186288347	C	T	SNP	LRP2BP	ENST00000362004	human	ensembl	74_37	-1	known	missense	c.1037	p.R346H	0.003	NULL	pfam_Sel1-like,pfam_TPR_2,smart_Sel1-like,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	LRP2BP	HGNC	ENSG00000109771				179	0	0	131	42	24.2775
PDLIM3	0	genome.wustl.edu	37	4	186446177	186446177	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	186446177	186446177	T	C	SNP	PDLIM3	ENST00000284770	human	ensembl	74_37	-1	known	missense	c.242	p.D81G	1.000	superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_Znf_LIM,superfamily_PDZ,smart_PDZ,smart_ZASP,smart_Znf_LIM,pfscan_Znf_LIM,pfscan_PDZ	-	no_errors	PDLIM3	HGNC	ENSG00000154553				135	0	0	119	8	6.29921
FAM149A	0	genome.wustl.edu	37	4	187086544	187086544	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	187086544	187086544	C	T	SNP	FAM149A	ENST00000356371	human	ensembl	74_37	+1	known	missense	c.1963	p.R655W	0.038	NULL	pfam_DUF3719	-	no_errors	FAM149A	HGNC	ENSG00000109794				58	0	0	47	16	25.3968
CYP4V2	0	genome.wustl.edu	37	4	187120119	187120119	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	187120119	187120119	A	G	SNP	CYP4V2	ENST00000378802	human	ensembl	74_37	+1	known	missense	c.683	p.E228G	0.994	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4V2	HGNC	ENSG00000145476				102	0	0	66	24	26.6667
KLKB1	0	genome.wustl.edu	37	4	187172953	187172953	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	187172953	187172953	C	T	SNP	KLKB1	ENST00000264690	human	ensembl	74_37	+1	known	missense	c.1082	p.A361V	0.266	pfam_PAN-1_domain,smart_Apple,pfscan_Pan_app	pfam_Peptidase_S1,pfam_PAN-1_domain,superfamily_Trypsin-like_Pept_dom,smart_Apple,smart_Peptidase_S1,pfscan_Pan_app,pfscan_Peptidase_S1,prints_Apple,prints_Peptidase_S1A	-	no_errors	KLKB1	HGNC	ENSG00000164344				167	0	0	98	23	19.0083
FAT1	0	genome.wustl.edu	37	4	187540638	187540638	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	187540638	187540638	G	A	SNP	FAT1	ENST00000441802	human	ensembl	74_37	-1	known	missense	c.7102	p.P2368S	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857				121	0	0	74	31	29.5238
FAT1	0	genome.wustl.edu	37	4	187540995	187540995	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	187540995	187540995	C	T	SNP	FAT1	ENST00000441802	human	ensembl	74_37	-1	known	missense	c.6745	p.A2249T	0.999	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857				191	0	0	138	13	8.60927
FAT1	0	genome.wustl.edu	37	4	187630114	187630114	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	187630114	187630114	C	T	SNP	FAT1	ENST00000441802	human	ensembl	74_37	-1	known	missense	c.868	p.A290T	1.000	superfamily_Cadherin-like,smart_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857				382	0	0	356	27	7.04961
SLIT2	0	genome.wustl.edu	37	4	20597356	20597356	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	20597356	20597356	C	T	SNP	SLIT2	ENST00000504154	human	ensembl	74_37	+1	known	silent	c.3219	p.C1073	0.965	smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_EG-like_dom,pfam_Laminin_G,pfam_Leu-rich_rpt,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl_sf,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT2	HGNC	ENSG00000145147				231	0	0	161	48	22.9665
PI4K2B	0	genome.wustl.edu	37	4	25270822	25270822	+	Silent	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	25270822	25270822	T	C	SNP	PI4K2B	ENST00000264864	human	ensembl	74_37	+1	known	silent	c.1269	p.G423	0.857	pfam_PI3/4_kinase_cat_dom	pfam_PI3/4_kinase_cat_dom	-	no_errors	PI4K2B	HGNC	ENSG00000038210				87	0	0	88	7	7.36842
RBPJ	0	genome.wustl.edu	37	4	26407807	26407807	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	26407807	26407807	C	T	SNP	RBPJ	ENST00000342295	human	ensembl	74_37	+1	known	nonsense	c.109	p.R37*	1.000	superfamily_p53-like_TF_DNA-bd	pfam_Beta-trefoil_DNA-bd_dom,pfam_LAG1_DNA-bd,pfam_IPT,superfamily_Beta-trefoil_DNA-bd_dom,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set	-	no_errors	RBPJ	HGNC	ENSG00000168214				111	0	0	57	14	19.7183
RBPJ	0	genome.wustl.edu	37	4	26431567	26431567	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	26431567	26431567	C	T	SNP	RBPJ	ENST00000342295	human	ensembl	74_37	+1	known	silent	c.975	p.G325	0.061	pfam_Beta-trefoil_DNA-bd_dom,superfamily_Beta-trefoil_DNA-bd_dom	pfam_Beta-trefoil_DNA-bd_dom,pfam_LAG1_DNA-bd,pfam_IPT,superfamily_Beta-trefoil_DNA-bd_dom,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set	-	no_errors	RBPJ	HGNC	ENSG00000168214				70	0	0	52	14	21.2121
STIM2	0	genome.wustl.edu	37	4	27019446	27019446	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	27019446	27019446	G	A	SNP	STIM2	ENST00000382009	human	ensembl	74_37	+1	known	missense	c.1888	p.A630T	0.028	NULL	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,pfscan_SAM	-	no_errors	STIM2	HGNC	ENSG00000109689				191	1	0.520833	109	38	25.8503
TNIP2	0	genome.wustl.edu	37	4	2746482	2746482	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	2746482	2746482	G	A	SNP	TNIP2	ENST00000315423	human	ensembl	74_37	-1	known	missense	c.848	p.A283V	0.956	NULL	pfam_EABR	-	no_errors	TNIP2	HGNC	ENSG00000168884				38	0	0	29	17	36.9565
MFSD10	0	genome.wustl.edu	37	4	2933648	2933648	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	2933648	2933648	C	T	SNP	MFSD10	ENST00000329687	human	ensembl	74_37	-1	known	missense	c.818	p.R273H	0.935	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	MFSD10	HGNC	ENSG00000109736				12	0	0	8	4	33.3333
MFSD10	0	genome.wustl.edu	37	4	2933868	2933868	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	2933868	2933868	C	T	SNP	MFSD10	ENST00000329687	human	ensembl	74_37	-1	known	missense	c.706	p.A236T	0.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	MFSD10	HGNC	ENSG00000109736				10	0	0	4	4	50
MFSD10	0	genome.wustl.edu	37	4	2934476	2934476	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	2934476	2934476	C	T	SNP	MFSD10	ENST00000329687	human	ensembl	74_37	-1	known	missense	c.382	p.A128T	0.991	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	MFSD10	HGNC	ENSG00000109736				26	0	0	16	5	23.8095
PCDH7	0	genome.wustl.edu	37	4	30723444	30723444	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	30723444	30723444	C	T	SNP	PCDH7	ENST00000543491	human	ensembl	74_37	+1	known	missense	c.400	p.L134F	0.995	smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH7	HGNC	ENSG00000169851				24	0	0	8	6	42.8571
PCDH7	0	genome.wustl.edu	37	4	30724207	30724207	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	30724207	30724207	G	A	SNP	PCDH7	ENST00000543491	human	ensembl	74_37	+1	known	missense	c.1163	p.R388H	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH7	HGNC	ENSG00000169851				28	0	0	23	11	32.3529
PCDH7	0	genome.wustl.edu	37	4	30724342	30724342	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	30724342	30724342	C	T	SNP	PCDH7	ENST00000543491	human	ensembl	74_37	+1	known	missense	c.1298	p.A433V	0.993	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH7	HGNC	ENSG00000169851				36	0	0	26	3	10.3448
PCDH7	0	genome.wustl.edu	37	4	30725052	30725052	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	30725052	30725052	C	T	SNP	PCDH7	ENST00000543491	human	ensembl	74_37	+1	known	missense	c.2008	p.R670W	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH7	HGNC	ENSG00000169851				138	0	0	73	30	29.1262
PCDH7	0	genome.wustl.edu	37	4	30732378	30732378	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	30732378	30732378	C	T	SNP	PCDH7	ENST00000361762	human	ensembl	74_37	+1	known	missense	c.3178	p.R1060C	1.000	NULL	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH7	HGNC	ENSG00000169851				100	0	0	62	25	28.7356
RGS12	0	genome.wustl.edu	37	4	3318578	3318578	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	3318578	3318578	C	T	SNP	RGS12	ENST00000344733	human	ensembl	74_37	+1	known	silent	c.681	p.N227	0.740	smart_PTB/PI_dom	pfam_Raf-like_ras-bd,pfam_RGS_dom,pfam_PDZ,pfam_GoLoco_motif,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_PTB/PI_dom,smart_Regulat_G_prot_signal_superfam,smart_Raf-like_ras-bd,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_PDZ,pfscan_PTB/PI_dom,pfscan_Raf-like_ras-bd,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS12	HGNC	ENSG00000159788				83	0	0	63	12	16
LRPAP1	0	genome.wustl.edu	37	4	3519827	3519827	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	3519827	3519827	G	A	SNP	LRPAP1	ENST00000500728	human	ensembl	74_37	-1	known	missense	c.685	p.R229C	0.877	pfam_Alpha_2_MRAP_C,superfamily_MG_RAP_rcpt_1	pfam_Alpha_2_MRAP_C,pfam_MG_RAP_rcpt_1,superfamily_MG_RAP_rcpt_1	-	no_errors	LRPAP1	HGNC	ENSG00000163956				30	0	0	30	4	11.7647
ARAP2	0	genome.wustl.edu	37	4	36085059	36085059	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	36085059	36085059	T	C	SNP	ARAP2	ENST00000303965	human	ensembl	74_37	-1	known	missense	c.4439	p.D1480G	0.998	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_ArfGAP,pfam_SAM_type1,pfam_SAM_2,pfam_Ras-assoc,superfamily_Rho_GTPase_activation_prot,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP2	HGNC	ENSG00000047365				28	0	0	17	6	26.087
ARAP2	0	genome.wustl.edu	37	4	36179566	36179566	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	36179566	36179566	C	T	SNP	ARAP2	ENST00000303965	human	ensembl	74_37	-1	known	silent	c.1740	p.S580	0.001	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_ArfGAP,pfam_SAM_type1,pfam_SAM_2,pfam_Ras-assoc,superfamily_Rho_GTPase_activation_prot,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP2	HGNC	ENSG00000047365				82	0	0	74	16	17.7778
RELL1	0	genome.wustl.edu	37	4	37651073	37651073	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	37651073	37651073	C	T	SNP	RELL1	ENST00000314117	human	ensembl	74_37	-1	known	silent	c.138	p.S46	0.000	NULL	pfam_TNF_rcpt_RELT	-	no_errors	RELL1	HGNC	ENSG00000181826				208	1	0.478469	157	17	9.77011
FAM114A1	0	genome.wustl.edu	37	4	38907188	38907188	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	38907188	38907188	G	A	SNP	FAM114A1	ENST00000358869	human	ensembl	74_37	+1	known	missense	c.482	p.R161Q	0.930	pfam_DUF719	pfam_DUF719	-	no_errors	FAM114A1	HGNC	ENSG00000197712				170	0	0	118	35	22.8758
WDR19	0	genome.wustl.edu	37	4	39278679	39278679	+	Silent	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	39278679	39278679	A	G	SNP	WDR19	ENST00000399820	human	ensembl	74_37	+1	known	silent	c.3756	p.P1252	0.720	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR19	HGNC	ENSG00000157796				152	0	0	114	24	17.3913
RFC1	0	genome.wustl.edu	37	4	39290444	39290444	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	39290444	39290444	C	T	SNP	RFC1	ENST00000381897	human	ensembl	74_37	-1	known	silent	c.3384	p.K1128	0.968	pirsf_DNA_replication_fac_C_lsu	pfam_DNA_replication_fac_RFC1_C,pfam_BRCT_dom,pfam_ATPase_AAA_core,superfamily_DNA_pol3_clamp-load_cplx_C,superfamily_P-loop_NTPase,superfamily_BRCT_dom,smart_BRCT_dom,smart_AAA+_ATPase,pirsf_DNA_replication_fac_C_lsu,pfscan_BRCT_dom	-	no_errors	RFC1	HGNC	ENSG00000035928				115	0	0	67	21	23.8636
PDS5A	0	genome.wustl.edu	37	4	39929664	39929664	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	39929664	39929664	G	A	SNP	PDS5A	ENST00000303538	human	ensembl	74_37	-1	known	missense	c.259	p.R87C	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	PDS5A	HGNC	ENSG00000121892				78	0	0	60	14	18.9189
N4BP2	0	genome.wustl.edu	37	4	40104327	40104327	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	40104327	40104327	G	A	SNP	N4BP2	ENST00000261435	human	ensembl	74_37	+1	known	missense	c.862	p.A288T	0.007	NULL	pfam_DUF1771,pfam_Smr/MutS2_C,superfamily_P-loop_NTPase,superfamily_UBA-like,smart_Smr/MutS2_C,pfscan_CUE,pfscan_Smr/MutS2_C	-	no_errors	N4BP2	HGNC	ENSG00000078177				113	0	0	77	7	8.33333
RHOH	0	genome.wustl.edu	37	4	40245073	40245073	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	40245073	40245073	C	T	SNP	RHOH	ENST00000381799	human	ensembl	74_37	+1	known	missense	c.67	p.R23C	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHOH	HGNC	ENSG00000168421				86	0	0	49	28	36.3636
RBM47	0	genome.wustl.edu	37	4	40440533	40440533	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	40440533	40440533	G	A	SNP	RBM47	ENST00000295971	human	ensembl	74_37	-1	known	silent	c.378	p.R126	0.997	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	RBM47	HGNC	ENSG00000163694				44	0	0	28	6	17.6471
ENSG00000250906	0	genome.wustl.edu	37	4	40827846	40827846	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	40827846	40827846	G	A	SNP	ENSG00000250906	ENST00000513127	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	RP11-632F7.3	Clone_based_vega_gene	ENSG00000250906				45	0	0	33	4	10.8108
UCHL1	0	genome.wustl.edu	37	4	41266152	41266152	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	41266152	41266152	G	A	SNP	UCHL1	ENST00000284440	human	ensembl	74_37	+1	known	missense	c.559	p.A187T	0.007	pfam_Peptidase_C12	pfam_Peptidase_C12,prints_Peptidase_C12	-	no_errors	UCHL1	HGNC	ENSG00000154277				130	0	0	85	36	29.7521
LIMCH1	0	genome.wustl.edu	37	4	41615101	41615101	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	41615101	41615101	G	A	SNP	LIMCH1	ENST00000396595	human	ensembl	74_37	+1	known	missense	c.10	p.E4K	0.079	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LIMCH1	HGNC	ENSG00000064042				27	0	0	11	4	26.6667
DCAF4L1	0	genome.wustl.edu	37	4	41984291	41984291	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	41984291	41984291	C	T	SNP	DCAF4L1	ENST00000333141	human	ensembl	74_37	+1	known	missense	c.482	p.A161V	0.997	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF4L1	HGNC	ENSG00000182308				126	0	0	81	29	26.3636
ZBTB49	0	genome.wustl.edu	37	4	4304088	4304088	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	4304088	4304088	G	A	SNP	ZBTB49	ENST00000503703	human	ensembl	74_37	+1	known	missense	c.203	p.R68H	0.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,pfscan_BTB/POZ-like	-	no_errors	ZBTB49	HGNC	ENSG00000168826				126	0	0	80	34	29.8246
ZNF721	0	genome.wustl.edu	37	4	436305	436305	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	436305	436305	C	T	SNP	ZNF721	ENST00000511833	human	ensembl	74_37	-1	known	missense	c.1951	p.A651T	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF721	HGNC	ENSG00000182903				208	0	0	138	18	11.5385
ZNF721	0	genome.wustl.edu	37	4	436306	436306	+	Silent	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	436306	436306	A	G	SNP	ZNF721	ENST00000511833	human	ensembl	74_37	-1	known	silent	c.1950	p.F650	0.001	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF721	HGNC	ENSG00000182903				207	0	0	125	35	21.875
NSG1	0	genome.wustl.edu	37	4	4419079	4419079	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	4419079	4419079	C	T	SNP	NSG1	ENST00000397958	human	ensembl	74_37	+1	known	missense	c.475	p.R159C	1.000	pfam_Calcyon_neuron-sp,pirsf_Calcyon_neuron-sp	pfam_Calcyon_neuron-sp,pirsf_Calcyon_neuron-sp	-	no_errors	NSG1	Uniprot_gn	ENSG00000168824				169	0	0	123	41	25
GABRA4	0	genome.wustl.edu	37	4	46967169	46967169	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	46967169	46967169	C	T	SNP	GABRA4	ENST00000264318	human	ensembl	74_37	-1	known	missense	c.952	p.A318T	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABBAa4_rcpt,prints_GABAA_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA4	HGNC	ENSG00000109158				142	0	0	115	46	28.5714
TEC	0	genome.wustl.edu	37	4	48230566	48230566	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	48230566	48230566	C	T	SNP	TEC	ENST00000381501	human	ensembl	74_37	-1	known	silent	c.66	p.S22	0.871	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_Pleckstrin_homology,pfam_SH3_domain,pfam_Znf_Btk_motif,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_Znf_Btk_motif,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Znf_Btk_motif,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,prints_SH2,prints_Znf_Btk_motif	-	no_errors	TEC	HGNC	ENSG00000135605				89	0	0	66	6	8.33333
FRYL	0	genome.wustl.edu	37	4	48591779	48591779	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	48591779	48591779	C	T	SNP	FRYL	ENST00000358350	human	ensembl	74_37	-1	known	silent	c.1623	p.E541	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FRYL	HGNC	ENSG00000075539				137	0	0	101	35	25.7353
DCUN1D4	0	genome.wustl.edu	37	4	52765528	52765528	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	52765528	52765528	C	T	SNP	DCUN1D4	ENST00000451288	human	ensembl	74_37	+1	known	missense	c.731	p.A244V	1.000	pfam_PONY_dom	pfam_PONY_dom	-	no_errors	DCUN1D4	HGNC	ENSG00000109184				25	0	0	20	6	23.0769
SGCB	0	genome.wustl.edu	37	4	52895985	52895985	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	52895985	52895985	G	A	SNP	SGCB	ENST00000381431	human	ensembl	74_37	-1	known	silent	c.288	p.G96	1.000	pfam_Sarcoglycan	pfam_Sarcoglycan	-	no_errors	SGCB	HGNC	ENSG00000163069				97	0	0	68	9	11.6883
SGCB	0	genome.wustl.edu	37	4	52895995	52895995	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	52895995	52895995	C	T	SNP	SGCB	ENST00000381431	human	ensembl	74_37	-1	known	missense	c.278	p.G93E	1.000	pfam_Sarcoglycan	pfam_Sarcoglycan	-	no_errors	SGCB	HGNC	ENSG00000163069				92	0	0	69	5	6.75676
USP46	0	genome.wustl.edu	37	4	53494163	53494163	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	53494163	53494163	G	A	SNP	USP46	ENST00000441222	human	ensembl	74_37	-1	known	silent	c.285	p.G95	0.987	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP46	HGNC	ENSG00000109189				43	0	0	25	13	34.2105
SCFD2	0	genome.wustl.edu	37	4	53773693	53773693	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	53773693	53773693	G	A	SNP	SCFD2	ENST00000401642	human	ensembl	74_37	-1	known	silent	c.1773	p.S591	0.000	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	SCFD2	HGNC	ENSG00000184178				130	0	0	89	37	29.3651
LNX1	0	genome.wustl.edu	37	4	54364904	54364904	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	54364904	54364904	G	A	SNP	LNX1	ENST00000263925	human	ensembl	74_37	-1	known	silent	c.882	p.S294	0.377	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING	-	no_errors	LNX1	HGNC	ENSG00000072201				66	0	0	56	22	28.2051
LNX1	0	genome.wustl.edu	37	4	54373579	54373579	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	54373579	54373579	G	A	SNP	LNX1	ENST00000263925	human	ensembl	74_37	-1	known	missense	c.680	p.A227V	0.996	NULL	pfam_PDZ,superfamily_PDZ,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING	-	no_errors	LNX1	HGNC	ENSG00000072201				66	0	0	41	21	33.871
STK32B	0	genome.wustl.edu	37	4	5458606	5458606	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	5458606	5458606	T	C	SNP	STK32B	ENST00000282908	human	ensembl	74_37	+1	known	missense	c.739	p.Y247H	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	STK32B	HGNC	ENSG00000152953				27	0	0	12	6	33.3333
C4orf6	0	genome.wustl.edu	37	4	5527158	5527158	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	5527158	5527158	G	A	SNP	C4orf6	ENST00000195455	human	ensembl	74_37	+1	known	missense	c.101	p.R34H	0.011	NULL	NULL	-	no_errors	C4orf6	HGNC	ENSG00000082929				48	0	0	35	17	32.6923
KIAA1211	0	genome.wustl.edu	37	4	57180790	57180790	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	57180790	57180790	G	A	SNP	KIAA1211	ENST00000504228	human	ensembl	74_37	+1	known	silent	c.1122	p.Q374	0.000	NULL	NULL	-	no_errors	KIAA1211	HGNC	ENSG00000109265				13	0	0	5	5	50
REST	0	genome.wustl.edu	37	4	57798266	57798266	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	57798266	57798266	G	A	SNP	REST	ENST00000309042	human	ensembl	74_37	+1	known	missense	c.3242	p.R1081H	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	REST	HGNC	ENSG00000084093				122	0	0	114	10	8.06452
POLR2B	0	genome.wustl.edu	37	4	57889686	57889686	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	57889686	57889686	C	T	SNP	POLR2B	ENST00000314595	human	ensembl	74_37	+1	known	silent	c.2706	p.G902	0.997	pfam_DNA-dir_RNA_pol_su2_6	pfam_DNA-dir_RNA_pol_su2_6,pfam_RNA_pol_bsu_protrusion,pfam_RNA_pol_Rpb2_2,pfam_RNA_pol_Rpb2_7,pfam_RNA_pol_Rpb2_4,pfam_RNA_pol_Rpb2_3,pfam_RNA_pol_Rpb2_5	-	no_errors	POLR2B	HGNC	ENSG00000047315				123	0	0	94	28	22.9508
EVC	0	genome.wustl.edu	37	4	5803721	5803721	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	5803721	5803721	C	T	SNP	EVC	ENST00000264956	human	ensembl	74_37	+1	known	silent	c.2349	p.S783	0.007	NULL	NULL	-	no_errors	EVC	HGNC	ENSG00000072840				32	0	0	16	11	40.7407
CRMP1	0	genome.wustl.edu	37	4	5838577	5838577	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	5838577	5838577	G	A	SNP	CRMP1	ENST00000324989	human	ensembl	74_37	-1	known	missense	c.1367	p.A456V	1.000	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	CRMP1	HGNC	ENSG00000072832				72	0	0	49	15	23.4375
LPHN3	0	genome.wustl.edu	37	4	62598873	62598873	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	62598873	62598873	G	C	SNP	LPHN3	ENST00000507625	human	ensembl	74_37	+1	known	missense	c.1000	p.A334P	1.000	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like	-	no_errors	LPHN3	HGNC	ENSG00000150471				45	0	0	36	12	25
PPP2R2C	0	genome.wustl.edu	37	4	6374363	6374363	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	6374363	6374363	C	T	SNP	PPP2R2C	ENST00000335585	human	ensembl	74_37	-1	known	missense	c.512	p.G171D	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_PP2A_PR55	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_PP2A_PR55,prints_PP2A_PR55	-	no_errors	PPP2R2C	HGNC	ENSG00000074211				136	0	0	78	27	25.7143
CENPC	0	genome.wustl.edu	37	4	68380247	68380247	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	68380247	68380247	C	T	SNP	CENPC	ENST00000273853	human	ensembl	74_37	-1	known	missense	c.989	p.R330H	0.000	NULL	pfam_Mif2/CENP-C_cupin,pfam_Cupin_2,superfamily_RmlC_Cupin	-	no_errors	CENPC	HGNC	ENSG00000145241				32	0	0	26	4	13.3333
YTHDC1	0	genome.wustl.edu	37	4	69180004	69180004	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	69180004	69180004	C	T	SNP	YTHDC1	ENST00000344157	human	ensembl	74_37	-1	known	missense	c.1997	p.R666H	1.000	NULL	pfam_YTH_domain,pfscan_YTH_domain	-	no_errors	YTHDC1	HGNC	ENSG00000083896				50	0	0	32	9	21.9512
UGT2B15	0	genome.wustl.edu	37	4	69512908	69512908	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	69512908	69512908	C	T	SNP	UGT2B15	ENST00000338206	human	ensembl	74_37	-1	known	missense	c.1507	p.A503T	0.320	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2B15	HGNC	ENSG00000196620				131	0	0	116	42	26.5823
UGT2B28	0	genome.wustl.edu	37	4	70146222	70146222	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	70146222	70146222	G	T	SNP	UGT2B28	ENST00000335568	human	ensembl	74_37	+1	known	missense	c.4	p.A2S	0.003	NULL	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2B28	HGNC	ENSG00000135226				234	0	0	221	13	5.55556
UGT2B4	0	genome.wustl.edu	37	4	70351060	70351060	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	70351060	70351060	G	A	SNP	UGT2B4	ENST00000305107	human	ensembl	74_37	-1	known	silent	c.1176	p.G392	0.088	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2B4	HGNC	ENSG00000156096				212	0	0	148	54	26.7327
UGT2B4	0	genome.wustl.edu	37	4	70360986	70360986	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	70360986	70360986	C	T	SNP	UGT2B4	ENST00000305107	human	ensembl	74_37	-1	known	missense	c.594	p.M198I	0.247	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2B4	HGNC	ENSG00000156096				128	1	0.775194	93	30	24.3902
TADA2B	0	genome.wustl.edu	37	4	7056185	7056185	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	7056185	7056185	G	A	SNP	TADA2B	ENST00000310074	human	ensembl	74_37	+1	known	missense	c.667	p.A223T	1.000	pirsf_Transcriptional_adaptor_2	pfam_SANT/Myb,pfam_Znf_ZZ,superfamily_Homeodomain-like,smart_Znf_ZZ,smart_SANT/Myb,pirsf_Transcriptional_adaptor_2,pfscan_Znf_ZZ,pfscan_Myb-like_dom	-	no_errors	TADA2B	HGNC	ENSG00000173011				87	0	0	79	7	8.13953
CABS1	0	genome.wustl.edu	37	4	71201857	71201857	+	Silent	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	71201857	71201857	T	C	SNP	CABS1	ENST00000273936	human	ensembl	74_37	+1	known	silent	c.1101	p.D367	0.000	NULL	NULL	-	no_errors	CABS1	HGNC	ENSG00000145309				122	0	0	132	8	5.71429
GC	0	genome.wustl.edu	37	4	72631188	72631188	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	72631188	72631188	C	T	SNP	GC	ENST00000273951	human	ensembl	74_37	-1	known	missense	c.434	p.C145Y	1.000	pfam_Serum_albumin_N,superfamily_Serum_albumin-like,smart_Serum_albumin_N,prints_ALB/AFP/VDB	pfam_Serum_albumin_N,pfam_VitD-bind_III,superfamily_Serum_albumin-like,smart_Serum_albumin_N,prints_VitD-bd,prints_ALB/AFP/VDB	-	no_errors	GC	HGNC	ENSG00000145321				157	0	0	101	30	22.9008
NPFFR2	0	genome.wustl.edu	37	4	72994441	72994441	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	72994441	72994441	G	A	SNP	NPFFR2	ENST00000308744	human	ensembl	74_37	+1	known	missense	c.439	p.A147T	1.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_NPFF_rcpt_2,prints_NPFF_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	NPFFR2	HGNC	ENSG00000056291				92	0	0	80	24	23.0769
ADAMTS3	0	genome.wustl.edu	37	4	73176816	73176816	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	73176816	73176816	C	T	SNP	ADAMTS3	ENST00000286657	human	ensembl	74_37	-1	known	silent	c.2004	p.T668	0.004	NULL	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS3	HGNC	ENSG00000156140				112	0	0	85	24	22.0183
ANKRD17	0	genome.wustl.edu	37	4	74017203	74017203	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	74017203	74017203	C	T	SNP	ANKRD17	ENST00000358602	human	ensembl	74_37	-1	known	missense	c.1273	p.A425T	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_KH_dom_type_1,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_KH_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_KH_dom_type_1,prints_Ankyrin_rpt	-	no_errors	ANKRD17	HGNC	ENSG00000132466				51	0	0	37	8	17.7778
AFP	0	genome.wustl.edu	37	4	74318231	74318231	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	74318231	74318231	C	T	SNP	AFP	ENST00000395792	human	ensembl	74_37	+1	known	silent	c.1542	p.S514	0.381	pfam_Serum_albumin_N,superfamily_Serum_albumin-like,smart_Serum_albumin_N,pirsf_Serum_albumin/AFP	pfam_Serum_albumin_N,superfamily_Serum_albumin-like,smart_Serum_albumin_N,pirsf_Serum_albumin/AFP,prints_Alpha-fetoprotein,prints_ALB/AFP/VDB	-	no_errors	AFP	HGNC	ENSG00000081051				102	0	0	67	16	19.2771
PSAPL1	0	genome.wustl.edu	37	4	7435640	7435640	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	7435640	7435640	G	A	SNP	PSAPL1	ENST00000319098	human	ensembl	74_37	-1	known	missense	c.967	p.R323C	0.476	pirsf_Saposin_chordata,pfam_SapB_1,superfamily_Saposin-like,smart_SaposinB,pfscan_SaposinB	pirsf_Saposin_chordata,pfam_SapA,pfam_SapB_1,pfam_SapB_2,superfamily_Saposin-like,smart_SapA,smart_SaposinB,prints_Saposin,pfscan_SapA,pfscan_SaposinB	-	no_errors	PSAPL1	HGNC	ENSG00000178597				61	0	0	54	14	20.5882
PF4V1	0	genome.wustl.edu	37	4	74719624	74719624	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	74719624	74719624	C	T	SNP	PF4V1	ENST00000226524	human	ensembl	74_37	+1	known	silent	c.225	p.L75	0.095	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom,prints_Chemokine_CXC	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom,prints_Chemokine_CXC	-	no_errors	PF4V1	HGNC	ENSG00000109272				51	0	0	40	13	24.5283
CNOT6L	0	genome.wustl.edu	37	4	78652648	78652648	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	78652648	78652648	G	A	SNP	CNOT6L	ENST00000264903	human	ensembl	74_37	-1	known	missense	c.917	p.A306V	1.000	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	pfam_Endo/exonuclease/phosphatase,pfam_Leu-rich_rpt,superfamily_Endo/exonuclease/phosphatase,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	CNOT6L	HGNC	ENSG00000138767				82	0	0	47	19	28.7879
PAQR3	0	genome.wustl.edu	37	4	79841732	79841732	+	Silent	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	79841732	79841732	T	C	SNP	PAQR3	ENST00000511594	human	ensembl	74_37	-1	known	silent	c.897	p.R299	1.000	NULL	pfam_HlyIII-related	-	no_errors	PAQR3	HGNC	ENSG00000163291				95	0	0	76	27	26.2136
ABLIM2	0	genome.wustl.edu	37	4	8010821	8010821	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	8010821	8010821	G	A	SNP	ABLIM2	ENST00000447017	human	ensembl	74_37	-1	known	nonsense	c.1432	p.R478*	0.020	NULL	pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM	-	no_errors	ABLIM2	HGNC	ENSG00000163995				117	0	0	102	7	6.42202
ANTXR2	0	genome.wustl.edu	37	4	80906003	80906003	+	Silent	SNP	A	A	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	80906003	80906003	A	T	SNP	ANTXR2	ENST00000307333	human	ensembl	74_37	-1	known	silent	c.1056	p.P352	0.985	pirsf_Anthrax_toxin_rcpt	pirsf_Anthrax_toxin_rcpt,pfam_Anthrax_toxin_rcpt_C,pfam_Anthrax_toxin_rcpt_extracel,pfam_VWF_A,superfamily_Ig_E-set,smart_VWF_A,pfscan_VWF_A	-	no_errors	ANTXR2	HGNC	ENSG00000163297				24	0	0	14	6	30
SH3TC1	0	genome.wustl.edu	37	4	8230088	8230088	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	8230088	8230088	C	T	SNP	SH3TC1	ENST00000245105	human	ensembl	74_37	+1	known	silent	c.2667	p.A889	0.854	smart_TPR_repeat	superfamily_SH3_domain,smart_SH3_domain,smart_TPR_repeat,pfscan_SH3_domain	-	no_errors	SH3TC1	HGNC	ENSG00000125089				37	0	0	23	7	23.3333
SH3TC1	0	genome.wustl.edu	37	4	8233879	8233879	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	8233879	8233879	G	A	SNP	SH3TC1	ENST00000245105	human	ensembl	74_37	+1	known	missense	c.3127	p.E1043K	0.997	NULL	superfamily_SH3_domain,smart_SH3_domain,smart_TPR_repeat,pfscan_SH3_domain	-	no_errors	SH3TC1	HGNC	ENSG00000125089				18	0	0	10	6	37.5
HNRNPDL	0	genome.wustl.edu	37	4	83350541	83350541	+	Silent	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	83350541	83350541	A	G	SNP	HNRNPDL	ENST00000295470	human	ensembl	74_37	-1	known	silent	c.303	p.A101	0.077	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPDL	HGNC	ENSG00000152795				57	0	0	41	13	24.0741
ENOPH1	0	genome.wustl.edu	37	4	83381193	83381193	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	83381193	83381193	G	A	SNP	ENOPH1	ENST00000273920	human	ensembl	74_37	+1	known	missense	c.706	p.A236T	0.956	superfamily_HAD-like_dom,tigrfam_Enolase-ppase_E1	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_Enolase-ppase_E1,tigrfam_HAD-SF_hydro_IA	-	no_errors	ENOPH1	HGNC	ENSG00000145293				78	0	0	62	8	11.4286
ACOX3	0	genome.wustl.edu	37	4	8368787	8368787	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	8368787	8368787	G	A	SNP	ACOX3	ENST00000356406	human	ensembl	74_37	-1	known	silent	c.2004	p.G668	0.000	pfam_Acyl-CoA_oxidase_C,superfamily_AcylCo_DH/oxidase_C,pirsf_Acyl-CoA_oxidase	pfam_Acyl-CoA_oxidase_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_AcylCo_DH/oxidase_C,superfamily_AcylCo_DH/oxidase_C,superfamily_AcylCoA_DH/oxidase_NM_dom,pirsf_Acyl-CoA_oxidase	-	no_errors	ACOX3	HGNC	ENSG00000087008				59	0	0	41	22	34.9206
SCD5	0	genome.wustl.edu	37	4	83719512	83719512	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	83719512	83719512	G	A	SNP	SCD5	ENST00000319540	human	ensembl	74_37	-1	known	missense	c.179	p.A60V	1.000	prints_Fatty_acid_desaturase-1_core	pfam_Fatty_acid_desaturase-1,prints_Fatty_acid_desaturase-1_core	-	no_errors	SCD5	HGNC	ENSG00000145284				24	0	0	20	10	33.3333
ACOX3	0	genome.wustl.edu	37	4	8398744	8398744	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	8398744	8398744	C	T	SNP	ACOX3	ENST00000356406	human	ensembl	74_37	-1	known	missense	c.976	p.A326T	0.821	pfam_AcylCo_DH/oxidase_C,superfamily_AcylCo_DH/oxidase_C,pirsf_Acyl-CoA_oxidase	pfam_Acyl-CoA_oxidase_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_AcylCo_DH/oxidase_C,superfamily_AcylCo_DH/oxidase_C,superfamily_AcylCoA_DH/oxidase_NM_dom,pirsf_Acyl-CoA_oxidase	-	no_errors	ACOX3	HGNC	ENSG00000087008				63	0	0	47	16	25.3968
ACOX3	0	genome.wustl.edu	37	4	8416072	8416072	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	8416072	8416072	C	T	SNP	ACOX3	ENST00000356406	human	ensembl	74_37	-1	known	missense	c.490	p.G164S	1.000	pfam_Acyl-CoA_Oxase/DH_cen-dom,superfamily_AcylCoA_DH/oxidase_NM_dom,pirsf_Acyl-CoA_oxidase	pfam_Acyl-CoA_oxidase_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_AcylCo_DH/oxidase_C,superfamily_AcylCo_DH/oxidase_C,superfamily_AcylCoA_DH/oxidase_NM_dom,pirsf_Acyl-CoA_oxidase	-	no_errors	ACOX3	HGNC	ENSG00000087008				71	0	0	50	18	26.4706
WDFY3	0	genome.wustl.edu	37	4	85701365	85701365	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	85701365	85701365	C	T	SNP	WDFY3	ENST00000295888	human	ensembl	74_37	-1	known	missense	c.4261	p.A1421T	1.000	NULL	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl_sf,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625				132	0	0	85	25	22.7273
WDFY3	0	genome.wustl.edu	37	4	85715780	85715780	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	85715780	85715780	G	A	SNP	WDFY3	ENST00000295888	human	ensembl	74_37	-1	known	missense	c.3379	p.R1127C	0.996	superfamily_ConA-like_lec_gl_sf	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl_sf,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625				118	1	0.840336	100	7	6.54206
GAK	0	genome.wustl.edu	37	4	871523	871523	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	871523	871523	G	A	SNP	GAK	ENST00000314167	human	ensembl	74_37	-1	known	missense	c.1736	p.A579V	0.707	pfam_Tensin_phosphatase_C2-dom,superfamily_C2_dom,pfscan_Tensin_phosphatase_C2-dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Tensin_phosphatase_C2-dom,pfam_DnaJ_domain,superfamily_Kinase-like_dom,superfamily_DnaJ_domain,superfamily_C2_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_DnaJ_domain,pfscan_Prot_kinase_dom,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom,pfscan_DnaJ_domain	-	no_errors	GAK	HGNC	ENSG00000178950				34	0	0	20	14	41.1765
PTPN13	0	genome.wustl.edu	37	4	87726516	87726516	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	87726516	87726516	C	A	SNP	PTPN13	ENST00000436978	human	ensembl	74_37	+1	known	missense	c.6754	p.L2252I	0.998	pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,superfamily_PAZ_dom,smart_KIND,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN13	HGNC	ENSG00000163629				30	0	0	18	4	18.1818
C4orf36	0	genome.wustl.edu	37	4	87808929	87808929	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	87808929	87808929	G	A	SNP	C4orf36	ENST00000295898	human	ensembl	74_37	-1	known	missense	c.338	p.P113L	1.000	NULL	NULL	-	no_errors	C4orf36	HGNC	ENSG00000163633				63	0	0	55	17	23.6111
AFF1	0	genome.wustl.edu	37	4	88011180	88011180	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	88011180	88011180	G	A	SNP	AFF1	ENST00000395146	human	ensembl	74_37	+1	known	silent	c.1149	p.T383	0.997	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF1	HGNC	ENSG00000172493				86	0	0	63	14	18.1818
AFF1	0	genome.wustl.edu	37	4	88036259	88036259	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	88036259	88036259	G	A	SNP	AFF1	ENST00000395146	human	ensembl	74_37	+1	known	silent	c.2274	p.P758	0.606	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF1	HGNC	ENSG00000172493				95	0	0	62	6	8.82353
PKD2	0	genome.wustl.edu	37	4	88986920	88986920	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	88986920	88986920	C	T	SNP	PKD2	ENST00000237596	human	ensembl	74_37	+1	known	silent	c.2247	p.G749	1.000	NULL	pfam_PKD1_2_channel,pfam_Ion_trans_dom,pfscan_EF_hand_dom,prints_PKD_2,prints_PKD_1	-	no_errors	PKD2	HGNC	ENSG00000118762				167	0	0	111	36	24.4898
HERC6	0	genome.wustl.edu	37	4	89358921	89358921	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	89358921	89358921	A	G	SNP	HERC6	ENST00000264346	human	ensembl	74_37	+1	known	missense	c.2543	p.D848G	0.995	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_Reg_chr_condens,superfamily_HECT,superfamily_RCC1/BLIP-II,smart_HECT,pfscan_HECT,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	HERC6	HGNC	ENSG00000138642				21	0	0	11	5	31.25
FAM13A-AS1	0	genome.wustl.edu	37	4	89649680	89649680	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	89649680	89649680	C	T	SNP	FAM13A-AS1	ENST00000500765	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FAM13A-AS1	HGNC	ENSG00000248019				73	0	0	33	9	21.4286
GPRIN3	0	genome.wustl.edu	37	4	90170134	90170134	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	90170134	90170134	C	T	SNP	GPRIN3	ENST00000333209	human	ensembl	74_37	-1	known	silent	c.1128	p.T376	0.000	NULL	NULL	-	no_errors	GPRIN3	HGNC	ENSG00000185477				58	0	0	32	13	28.8889
PDLIM5	0	genome.wustl.edu	37	4	95578591	95578591	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	95578591	95578591	C	T	SNP	PDLIM5	ENST00000317968	human	ensembl	74_37	+1	known	missense	c.1478	p.A493V	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,pfam_PDZ,superfamily_PDZ,smart_PDZ,smart_Znf_LIM,pfscan_Znf_LIM,pfscan_PDZ	-	no_errors	PDLIM5	HGNC	ENSG00000163110				86	0	0	57	17	22.973
DRD5	0	genome.wustl.edu	37	4	9784507	9784507	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	9784507	9784507	G	A	SNP	DRD5	ENST00000304374	human	ensembl	74_37	+1	known	missense	c.854	p.R285H	0.994	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Dopamine_D5_rcpt,prints_Dopamine_rcpt	-	no_errors	DRD5	HGNC	ENSG00000169676				63	0	0	29	15	34.0909
TSPAN5	0	genome.wustl.edu	37	4	99399869	99399869	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	99399869	99399869	G	A	SNP	TSPAN5	ENST00000508798	human	ensembl	74_37	-1	known	missense	c.479	p.A160V	0.994	NULL	pfam_Tetraspanin/Peripherin,prints_Tetraspanin	-	no_errors	TSPAN5	HGNC	ENSG00000168785				109	0	0	62	31	33.3333
TSPAN5	0	genome.wustl.edu	37	4	99407956	99407956	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	99407956	99407956	A	G	SNP	TSPAN5	ENST00000305798	human	ensembl	74_37	-1	known	missense	c.212	p.V71A	1.000	pfam_Tetraspanin/Peripherin,prints_Tetraspanin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN5	HGNC	ENSG00000168785				172	0	0	111	30	21.2766
METAP1	0	genome.wustl.edu	37	4	99960602	99960602	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	99960602	99960602	C	T	SNP	METAP1	ENST00000296411	human	ensembl	74_37	+1	known	nonsense	c.418	p.R140*	1.000	pfam_Pept_M24_structural-domain,superfamily_Pept_M24_structural-domain,tigrfam_Pept_M24A_MAP1	pfam_Pept_M24_structural-domain,superfamily_Pept_M24_structural-domain,prints_Pept_M24_MAP,tigrfam_Pept_M24A_MAP1	-	no_errors	METAP1	HGNC	ENSG00000164024				122	0	0	86	23	21.1009
ST8SIA4	0	genome.wustl.edu	37	5	100238558	100238558	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	100238558	100238558	C	T	SNP	ST8SIA4	ENST00000231461	human	ensembl	74_37	-1	known	silent	c.102	p.T34	1.000	pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST8SIA4	HGNC	ENSG00000113532				44	0	0	21	7	25
SLCO4C1	0	genome.wustl.edu	37	5	101592920	101592920	+	Silent	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	101592920	101592920	A	G	SNP	SLCO4C1	ENST00000310954	human	ensembl	74_37	-1	known	silent	c.1368	p.F456	0.995	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO4C1	HGNC	ENSG00000173930				64	0	0	60	21	25.9259
PAM	0	genome.wustl.edu	37	5	102237087	102237087	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	102237087	102237087	C	T	SNP	PAM	ENST00000304400	human	ensembl	74_37	+1	known	nonsense	c.238	p.R80*	0.995	pfam_Cu2_ascorb_mOase_N,superfamily_PHM/PNGase_F_dom	pfam_NHL_repeat,pfam_Cu2_ascorb_mOase_N,superfamily_PHM/PNGase_F_dom,pfscan_NHL_repeat_subgr,prints_Pep_amidat_mOase	-	no_errors	PAM	HGNC	ENSG00000145730				26	0	0	17	7	29.1667
PPIP5K2	0	genome.wustl.edu	37	5	102474135	102474135	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	102474135	102474135	G	A	SNP	PPIP5K2	ENST00000358359	human	ensembl	74_37	+1	known	missense	c.449	p.R150H	1.000	NULL	pfam_His_Pase_superF_clade-2	-	no_errors	PPIP5K2	HGNC	ENSG00000145725				77	0	0	46	16	25.8065
NUDT12	0	genome.wustl.edu	37	5	102891660	102891660	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	102891660	102891660	G	A	SNP	NUDT12	ENST00000230792	human	ensembl	74_37	-1	known	silent	c.936	p.G312	0.022	superfamily_NUDIX_hydrolase_dom-like	pfam_NUDIX_hydrolase_dom,pfam_Ankyrin_rpt,pfam_Znr_NADH_PPase,pfam_NADH_PPase-like_N,superfamily_NUDIX_hydrolase_dom-like,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	NUDT12	HGNC	ENSG00000112874				106	1	0.934579	84	9	9.67742
APC	0	genome.wustl.edu	37	5	112137021	112137021	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	112137021	112137021	C	T	SNP	APC	ENST00000257430	human	ensembl	74_37	+1	known	missense	c.775	p.R259W	1.000	NULL	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_APC_dom,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982				60	0	0	37	13	26
AQPEP	0	genome.wustl.edu	37	5	115338603	115338603	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	115338603	115338603	G	A	SNP	AQPEP	ENST00000357872	human	ensembl	74_37	+1	known	missense	c.1892	p.S631N	0.958	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	AQPEP	Uniprot_gn	ENSG00000172901				31	0	0	25	6	19.3548
SEMA6A	0	genome.wustl.edu	37	5	115783256	115783256	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	115783256	115783256	C	A	SNP	SEMA6A	ENST00000257414	human	ensembl	74_37	-1	known	missense	c.2197	p.D733Y	1.000	NULL	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom	-	no_errors	SEMA6A	HGNC	ENSG00000092421				113	0	0	80	22	21.5686
DMXL1	0	genome.wustl.edu	37	5	118482975	118482975	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	118482975	118482975	G	A	SNP	DMXL1	ENST00000539542	human	ensembl	74_37	+1	known	silent	c.2721	p.A907	0.797	superfamily_WD40_repeat_dom	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL1	HGNC	ENSG00000172869				62	0	0	52	22	29.7297
FTMT	0	genome.wustl.edu	37	5	121188112	121188112	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	121188112	121188112	G	A	SNP	FTMT	ENST00000321339	human	ensembl	74_37	+1	known	missense	c.454	p.D152N	0.392	pfam_Ferritin_DPS_dom,superfamily_Ferritin-like_SF,pfscan_Ferritin-like_diiron	pfam_Ferritin_DPS_dom,superfamily_Ferritin-like_SF,pfscan_Ferritin-like_diiron	-	no_errors	FTMT	HGNC	ENSG00000181867				91	0	0	61	19	23.75
SNCAIP	0	genome.wustl.edu	37	5	121761189	121761189	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	121761189	121761189	A	C	SNP	SNCAIP	ENST00000379533	human	ensembl	74_37	+1	known	missense	c.1286	p.N429T	0.982	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	SNCAIP	HGNC	ENSG00000064692				88	0	0	71	20	21.978
CSNK1G3	0	genome.wustl.edu	37	5	122950080	122950080	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	122950080	122950080	G	A	SNP	CSNK1G3	ENST00000360683	human	ensembl	74_37	+1	known	missense	c.1358	p.R453H	1.000	NULL	pfam_Prot_kinase_dom,pfam_Casein_kinase-1_gamma_C,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CSNK1G3	HGNC	ENSG00000151292				102	0	0	70	18	20.4545
ZNF608	0	genome.wustl.edu	37	5	123984239	123984239	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	123984239	123984239	C	T	SNP	ZNF608	ENST00000306315	human	ensembl	74_37	-1	known	missense	c.1838	p.S613N	1.000	NULL	NULL	-	no_errors	ZNF608	HGNC	ENSG00000168916				76	0	0	54	10	15.625
TERT	0	genome.wustl.edu	37	5	1264611	1264611	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	1264611	1264611	C	T	SNP	TERT	ENST00000310581	human	ensembl	74_37	-1	known	silent	c.2751	p.T917	0.000	pfscan_RVT	pfam_Telomerase_RBD,pfam_RVT,smart_Telomerase_RBD,pfscan_RVT,prints_Telomerase_RT	-	no_errors	TERT	HGNC	ENSG00000164362				53	0	0	39	13	25
MEGF10	0	genome.wustl.edu	37	5	126755870	126755870	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	126755870	126755870	C	T	SNP	MEGF10	ENST00000274473	human	ensembl	74_37	+1	known	missense	c.1561	p.R521C	1.000	smart_EG-like_dom,smart_EGF_laminin,pfscan_EG-like_dom	pfam_EGF_laminin,pfam_EGF_extracell,superfamily_Proteinase_amylase_inhib_dom,smart_EG-like_dom,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EMI_domain	-	no_errors	MEGF10	HGNC	ENSG00000145794				36	0	0	30	13	30.2326
FBN2	0	genome.wustl.edu	37	5	127668686	127668686	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	127668686	127668686	C	T	SNP	FBN2	ENST00000262464	human	ensembl	74_37	-1	known	missense	c.4140	p.M1380I	1.000	pirsf_FBN,pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pirsf_FBN,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Cadherin-like,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	FBN2	HGNC	ENSG00000138829				142	0	0	120	11	8.39695
FBN2	0	genome.wustl.edu	37	5	127685073	127685073	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	127685073	127685073	G	A	SNP	FBN2	ENST00000262464	human	ensembl	74_37	-1	known	silent	c.2955	p.G985	0.975	pirsf_FBN,pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pirsf_FBN,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Cadherin-like,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	FBN2	HGNC	ENSG00000138829				88	0	0	47	14	22.9508
RAPGEF6	0	genome.wustl.edu	37	5	130764881	130764881	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	130764881	130764881	G	A	SNP	RAPGEF6	ENST00000509018	human	ensembl	74_37	-1	known	silent	c.4494	p.D1498	0.998	NULL	pfam_RasGRF_CDC25,pfam_PDZ,pfam_Ras-assoc,pfam_cNMP-bd_dom,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,superfamily_PDZ,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ras-like_Gua-exchang_fac_N,smart_PDZ,smart_Ras-assoc,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_PDZ,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF6	HGNC	ENSG00000158987				91	0	0	75	12	13.7931
P4HA2	0	genome.wustl.edu	37	5	131534590	131534590	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	131534590	131534590	C	T	SNP	P4HA2	ENST00000166534	human	ensembl	74_37	-1	known	silent	c.1287	p.P429	0.680	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	pfam_Pro_4_hyd_alph_N,pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	P4HA2	HGNC	ENSG00000072682				59	0	0	36	8	18.1818
SLC22A4	0	genome.wustl.edu	37	5	131647916	131647916	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	131647916	131647916	C	T	SNP	SLC22A4	ENST00000200652	human	ensembl	74_37	+1	known	silent	c.456	p.G152	0.484	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A4	HGNC	ENSG00000197208				174	0	0	122	10	7.57576
KIF3A	0	genome.wustl.edu	37	5	132052617	132052617	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	132052617	132052617	T	A	SNP	KIF3A	ENST00000378735	human	ensembl	74_37	-1	known	missense	c.676	p.I226F	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	KIF3A	HGNC	ENSG00000131437				121	0	0	97	38	28.1481
CCNI2	0	genome.wustl.edu	37	5	132086668	132086668	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	132086668	132086668	G	A	SNP	CCNI2	ENST00000378731	human	ensembl	74_37	+1	novel	silent	c.753	p.T251	0.524	pirsf_Cyclin_A/B/D/E	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	-	no_errors	CCNI2	HGNC	ENSG00000205089				93	0	0	91	20	18.018
PPP2CA	0	genome.wustl.edu	37	5	133537696	133537696	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	133537696	133537696	C	T	SNP	PPP2CA	ENST00000481195	human	ensembl	74_37	-1	known	missense	c.329	p.R110H	1.000	pfam_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase	pfam_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP2CA	HGNC	ENSG00000113575				86	0	0	65	17	20.7317
C5orf20	0	genome.wustl.edu	37	5	134782488	134782488	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	134782488	134782488	G	A	SNP	C5orf20	ENST00000503143	human	ensembl	74_37	-1	known	missense	c.311	p.A104V	0.000	NULL	NULL	-	no_errors	C5orf20	HGNC	ENSG00000251380				104	0	0	76	27	26.2136
NME5	0	genome.wustl.edu	37	5	137454523	137454523	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	137454523	137454523	T	G	SNP	NME5	ENST00000265191	human	ensembl	74_37	-1	known	missense	c.539	p.K180T	1.000	pfam_Dpy-30_motif,pirsf_NDK_H5	pfam_Nucleoside_diP_kinase,pfam_Dpy-30_motif,superfamily_Nucleoside_diP_kinase,smart_Nucleoside_diP_kinase,pirsf_NDK_H5,prints_Nucleoside_diP_kinase	-	no_errors	NME5	HGNC	ENSG00000112981				54	0	0	46	5	9.80392
CDC25C	0	genome.wustl.edu	37	5	137621809	137621809	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	137621809	137621809	G	A	SNP	CDC25C	ENST00000323760	human	ensembl	74_37	-1	known	missense	c.1174	p.R392C	0.901	pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom	pfam_MPI_Phosphatase,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom,prints_MPI_Phosphatase	-	no_errors	CDC25C	HGNC	ENSG00000158402				87	0	0	76	17	18.2796
ETF1	0	genome.wustl.edu	37	5	137848611	137848611	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	137848611	137848611	G	A	SNP	ETF1	ENST00000360541	human	ensembl	74_37	-1	known	missense	c.574	p.R192C	1.000	pfam_eRF1_2,tigrfam_Peptide_chain-rel_eRF1/aRF1	pfam_eRF1_2,pfam_eRF1_3,pfam_eRF1_1_Pelota,superfamily_Release_factor_eRF1/aRF1_N,tigrfam_Peptide_chain-rel_eRF1/aRF1	-	no_errors	ETF1	HGNC	ENSG00000120705				112	0	0	63	23	26.7442
DNAH5	0	genome.wustl.edu	37	5	13891148	13891148	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	13891148	13891148	C	T	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	silent	c.2514	p.T838	0.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				126	1	0.787402	84	39	31.7073
CXXC5	0	genome.wustl.edu	37	5	139060723	139060723	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	139060723	139060723	G	A	SNP	CXXC5	ENST00000302517	human	ensembl	74_37	+1	known	silent	c.615	p.Q205	0.997	NULL	pfam_Znf_CXXC,pfscan_Znf_CXXC	-	no_errors	CXXC5	HGNC	ENSG00000171604				24	0	0	23	8	25.8065
SRA1	0	genome.wustl.edu	37	5	139930355	139930355	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	139930355	139930355	G	A	SNP	SRA1	ENST00000336283	human	ensembl	74_37	-1	known	missense	c.641	p.A214V	0.700	pfam_SRA1-protein/COPII_Sec31	pfam_SRA1-protein/COPII_Sec31	-	no_errors	SRA1	HGNC	ENSG00000213523				106	0	0	82	9	9.89011
ZMAT2	0	genome.wustl.edu	37	5	140085213	140085213	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	140085213	140085213	G	A	SNP	ZMAT2	ENST00000274712	human	ensembl	74_37	+1	known	missense	c.472	p.A158T	1.000	NULL	pfam_Znf_C2H2_jaz,pfam_Znf_U1-C,smart_Znf_U1	-	no_errors	ZMAT2	HGNC	ENSG00000146007				31	0	0	20	7	25.9259
PCDHA1	0	genome.wustl.edu	37	5	140167729	140167729	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	140167729	140167729	G	A	SNP	PCDHA1	ENST00000504120	human	ensembl	74_37	+1	known	silent	c.1854	p.A618	0.009	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA1	HGNC	ENSG00000204970				102	0	0	41	24	36.9231
PCDHA2	0	genome.wustl.edu	37	5	140175845	140175845	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	140175845	140175845	G	A	SNP	PCDHA2	ENST00000526136	human	ensembl	74_37	+1	known	silent	c.1296	p.S432	0.001	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA2	HGNC	ENSG00000204969				77	0	0	59	14	19.1781
PCDHA4	0	genome.wustl.edu	37	5	140188422	140188422	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	140188422	140188422	G	A	SNP	PCDHA4	ENST00000530339	human	ensembl	74_37	+1	known	silent	c.1650	p.T550	0.936	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA4	HGNC	ENSG00000204967				93	0	0	54	5	8.47458
PCDHA5	0	genome.wustl.edu	37	5	140201540	140201540	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	140201540	140201540	G	A	SNP	PCDHA5	ENST00000529859	human	ensembl	74_37	+1	known	silent	c.180	p.P60	0.403	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA5	HGNC	ENSG00000204965				87	0	0	53	19	26.3889
PCDHA8	0	genome.wustl.edu	37	5	140222549	140222549	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	140222549	140222549	A	G	SNP	PCDHA8	ENST00000531613	human	ensembl	74_37	+1	known	missense	c.1643	p.N548S	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA8	HGNC	ENSG00000204962				114	0	0	64	23	26.4368
PCDHA10	0	genome.wustl.edu	37	5	140237080	140237080	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	140237080	140237080	G	A	SNP	PCDHA10	ENST00000307360	human	ensembl	74_37	+1	known	missense	c.1447	p.A483T	0.346	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA10	HGNC	ENSG00000250120				127	0	0	62	24	27.907
PCDHA10	0	genome.wustl.edu	37	5	140237425	140237425	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	140237425	140237425	G	A	SNP	PCDHA10	ENST00000307360	human	ensembl	74_37	+1	known	missense	c.1792	p.A598T	0.986	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA10	HGNC	ENSG00000250120				62	0	0	42	11	20.7547
ENSG00000249034	0	genome.wustl.edu	37	5	140242884	140242884	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	140242884	140242884	G	A	SNP	ENSG00000249034	ENST00000502505	human	ensembl	74_37	-1	known	missense	c.92	p.A31V	1.000	NULL	NULL	-	no_errors	AC005609.1	Clone_based_ensembl_gene	ENSG00000249034				89	0	0	48	14	22.5806
PCDHA11	0	genome.wustl.edu	37	5	140250178	140250178	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	140250178	140250178	G	A	SNP	PCDHA11	ENST00000398640	human	ensembl	74_37	+1	known	missense	c.1490	p.R497Q	0.008	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA11	HGNC	ENSG00000249158				67	0	0	42	24	36.3636
PCDHA12	0	genome.wustl.edu	37	5	140256730	140256730	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	140256730	140256730	A	T	SNP	PCDHA12	ENST00000398631	human	ensembl	74_37	+1	known	missense	c.1673	p.E558V	0.999	superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA12	HGNC	ENSG00000251664				90	0	0	68	19	21.8391
PCDHA13	0	genome.wustl.edu	37	5	140261998	140261998	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	140261998	140261998	G	A	SNP	PCDHA13	ENST00000289272	human	ensembl	74_37	+1	known	missense	c.145	p.A49T	1.000	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA13	HGNC	ENSG00000239389				85	0	0	51	9	15
PCDHAC1	0	genome.wustl.edu	37	5	140307066	140307066	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	140307066	140307066	G	A	SNP	PCDHAC1	ENST00000253807	human	ensembl	74_37	+1	known	missense	c.589	p.A197T	0.778	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHAC1	HGNC	ENSG00000248383				46	0	0	26	8	23.5294
PCDHAC1	0	genome.wustl.edu	37	5	140307389	140307389	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	140307389	140307389	G	A	SNP	PCDHAC1	ENST00000253807	human	ensembl	74_37	+1	known	silent	c.912	p.T304	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHAC1	HGNC	ENSG00000248383				127	0	0	101	10	9.00901
PCDHAC2	0	genome.wustl.edu	37	5	140347212	140347212	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	140347212	140347212	C	T	SNP	PCDHAC2	ENST00000289269	human	ensembl	74_37	+1	known	silent	c.861	p.G287	0.972	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHAC2	HGNC	ENSG00000243232				52	0	0	31	9	22.5
PCDHB2	0	genome.wustl.edu	37	5	140475246	140475246	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	140475246	140475246	G	A	SNP	PCDHB2	ENST00000194155	human	ensembl	74_37	+1	known	missense	c.872	p.R291H	0.990	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB2	HGNC	ENSG00000112852				90	0	0	98	8	7.54717
PCDHB2	0	genome.wustl.edu	37	5	140476325	140476325	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	140476325	140476325	G	A	SNP	PCDHB2	ENST00000194155	human	ensembl	74_37	+1	known	missense	c.1951	p.E651K	0.960	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB2	HGNC	ENSG00000112852				24	0	0	14	9	39.1304
PCDHB3	0	genome.wustl.edu	37	5	140481651	140481651	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	140481651	140481651	T	C	SNP	PCDHB3	ENST00000231130	human	ensembl	74_37	+1	known	missense	c.1418	p.V473A	0.840	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB3	HGNC	ENSG00000113205				136	0	0	83	31	27.193
PCDHB3	0	genome.wustl.edu	37	5	140481683	140481683	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	140481683	140481683	G	A	SNP	PCDHB3	ENST00000231130	human	ensembl	74_37	+1	known	missense	c.1450	p.A484T	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB3	HGNC	ENSG00000113205				137	0	0	71	36	33.6449
PCDHB7	0	genome.wustl.edu	37	5	140554671	140554671	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	140554671	140554671	G	A	SNP	PCDHB7	ENST00000231137	human	ensembl	74_37	+1	known	missense	c.2255	p.C752Y	0.979	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB7	HGNC	ENSG00000113212				213	0	0	147	14	8.69565
PCDHB8	0	genome.wustl.edu	37	5	140559017	140559017	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	140559017	140559017	G	A	SNP	PCDHB8	ENST00000239444	human	ensembl	74_37	+1	known	missense	c.1402	p.A468T	0.996	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB8	HGNC	ENSG00000120322				230	0	0	159	21	11.6667
PCDHB16	0	genome.wustl.edu	37	5	140563922	140563922	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	140563922	140563922	G	A	SNP	PCDHB16	ENST00000361016	human	ensembl	74_37	+1	known	silent	c.1788	p.S596	0.995	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB16	HGNC	ENSG00000196963				66	0	0	20	14	41.1765
PCDHB10	0	genome.wustl.edu	37	5	140574209	140574209	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	140574209	140574209	C	T	SNP	PCDHB10	ENST00000239446	human	ensembl	74_37	+1	known	missense	c.2084	p.A695V	0.382	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB10	HGNC	ENSG00000120324				77	0	0	44	16	26.6667
PCDHB11	0	genome.wustl.edu	37	5	140581476	140581476	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	140581476	140581476	C	T	SNP	PCDHB11	ENST00000354757	human	ensembl	74_37	+1	known	missense	c.2129	p.A710V	0.001	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHB11	HGNC	ENSG00000197479				142	0	0	124	14	10.1449
PCDHB11	0	genome.wustl.edu	37	5	140581505	140581505	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	140581505	140581505	G	A	SNP	PCDHB11	ENST00000354757	human	ensembl	74_37	+1	known	missense	c.2158	p.A720T	0.101	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHB11	HGNC	ENSG00000197479				125	0	0	117	10	7.87402
PCDHB14	0	genome.wustl.edu	37	5	140604673	140604673	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	140604673	140604673	C	T	SNP	PCDHB14	ENST00000239449	human	ensembl	74_37	+1	known	silent	c.1596	p.G532	0.018	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB14	HGNC	ENSG00000120327				103	0	0	74	10	11.9048
PCDHB14	0	genome.wustl.edu	37	5	140605138	140605138	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	140605138	140605138	C	T	SNP	PCDHB14	ENST00000239449	human	ensembl	74_37	+1	known	silent	c.2061	p.T687	0.002	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB14	HGNC	ENSG00000120327				120	0	0	73	18	19.7802
PCDHB18	0	genome.wustl.edu	37	5	140615770	140615770	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	140615770	140615770	C	T	SNP	PCDHB18	ENST00000526308	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.631	-	-	-	no_errors	PCDHB18	HGNC	ENSG00000146001				47	0	0	36	8	18.1818
TAF7	0	genome.wustl.edu	37	5	140699196	140699196	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	140699196	140699196	G	A	SNP	TAF7	ENST00000313368	human	ensembl	74_37	-1	known	missense	c.416	p.P139L	1.000	pfam_TAFII55_prot_cons_reg	pfam_TAFII55_prot_cons_reg	-	no_errors	TAF7	HGNC	ENSG00000178913				176	0	0	135	32	19.1617
PCDHGA1	0	genome.wustl.edu	37	5	140710396	140710396	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	140710396	140710396	G	A	SNP	PCDHGA1	ENST00000517417	human	ensembl	74_37	+1	known	missense	c.145	p.A49T	0.288	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA1	HGNC	ENSG00000204956				153	0	0	91	37	28.9062
PCDHGA5	0	genome.wustl.edu	37	5	140745824	140745824	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	140745824	140745824	G	A	SNP	PCDHGA5	ENST00000518069	human	ensembl	74_37	+1	known	missense	c.1927	p.V643M	0.041	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA5	HGNC	ENSG00000253485				155	0	0	117	27	18.75
PCDHGA5	0	genome.wustl.edu	37	5	140746261	140746261	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	140746261	140746261	C	T	SNP	PCDHGA5	ENST00000518069	human	ensembl	74_37	+1	known	silent	c.2364	p.S788	0.010	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA5	HGNC	ENSG00000253485				210	1	0.473934	151	23	13.2184
PCDHGA9	0	genome.wustl.edu	37	5	140784212	140784212	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	140784212	140784212	C	T	SNP	PCDHGA9	ENST00000573521	human	ensembl	74_37	+1	known	missense	c.1693	p.P565S	1.000	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA9	HGNC	ENSG00000261934				214	0	0	156	16	9.30233
PCDHGB6	0	genome.wustl.edu	37	5	140789114	140789114	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	140789114	140789114	G	A	SNP	PCDHGB6	ENST00000520790	human	ensembl	74_37	+1	known	missense	c.1345	p.A449T	0.915	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB6	HGNC	ENSG00000253305				65	0	0	35	10	22.2222
PCDHGB7	0	genome.wustl.edu	37	5	140799072	140799072	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	140799072	140799072	G	A	SNP	PCDHGB7	ENST00000398594	human	ensembl	74_37	+1	known	missense	c.1646	p.R549H	0.987	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB7	HGNC	ENSG00000254122				33	0	0	27	10	27.027
PCDHGA12	0	genome.wustl.edu	37	5	140810542	140810542	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	140810542	140810542	G	A	SNP	PCDHGA12	ENST00000252085	human	ensembl	74_37	+1	known	silent	c.216	p.T72	0.000	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA12	HGNC	ENSG00000253159				124	0	0	81	18	18.1818
PCDHGA12	0	genome.wustl.edu	37	5	140812003	140812003	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	140812003	140812003	G	A	SNP	PCDHGA12	ENST00000252085	human	ensembl	74_37	+1	known	silent	c.1677	p.A559	0.015	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA12	HGNC	ENSG00000253159				251	0	0	148	57	27.8049
PCDHGC3	0	genome.wustl.edu	37	5	140857013	140857013	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	140857013	140857013	C	T	SNP	PCDHGC3	ENST00000308177	human	ensembl	74_37	+1	known	missense	c.1330	p.R444C	0.007	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGC3	HGNC	ENSG00000240184				138	0	0	84	24	22.2222
SLC6A3	0	genome.wustl.edu	37	5	1409199	1409199	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	1409199	1409199	G	A	SNP	SLC6A3	ENST00000270349	human	ensembl	74_37	-1	known	silent	c.1440	p.A480	0.938	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_dopamine	-	no_errors	SLC6A3	HGNC	ENSG00000142319				24	0	0	16	10	38.4615
HDAC3	0	genome.wustl.edu	37	5	141005313	141005313	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	141005313	141005313	G	A	SNP	HDAC3	ENST00000305264	human	ensembl	74_37	-1	known	missense	c.998	p.A333V	1.000	pirsf_His_deacetylse_1	pfam_His_deacetylse_dom,pirsf_His_deacetylse_1,prints_His_deacetylse_1,prints_His_deacetylse	-	no_errors	HDAC3	HGNC	ENSG00000171720				60	0	0	48	14	22.5806
TRIO	0	genome.wustl.edu	37	5	14367023	14367023	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	14367023	14367023	G	A	SNP	TRIO	ENST00000344204	human	ensembl	74_37	+1	known	missense	c.2809	p.A937T	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382				94	0	0	83	20	19.4175
KCTD16	0	genome.wustl.edu	37	5	143853254	143853254	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	143853254	143853254	C	T	SNP	KCTD16	ENST00000507359	human	ensembl	74_37	+1	known	silent	c.864	p.C288	0.990	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD16	HGNC	ENSG00000183775				119	0	0	76	19	20
TRIO	0	genome.wustl.edu	37	5	14401091	14401091	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	14401091	14401091	C	T	SNP	TRIO	ENST00000344204	human	ensembl	74_37	+1	known	missense	c.4634	p.T1545I	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382				72	0	0	38	8	17.3913
ENSG00000251556	0	genome.wustl.edu	37	5	145499910	145499910	+	RNA	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	145499910	145499910	T	C	SNP	ENSG00000251556	ENST00000514002	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP11-118M9.3	Clone_based_vega_gene	ENSG00000251556				172	0	0	128	44	25.5814
RBM27	0	genome.wustl.edu	37	5	145631338	145631338	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	145631338	145631338	G	A	SNP	RBM27	ENST00000265271	human	ensembl	74_37	+1	known	silent	c.1344	p.P448	1.000	NULL	pfam_PWI_dom,pfam_Znf_CCCH,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM27	HGNC	ENSG00000091009				181	0	0	103	51	33.1169
JAKMIP2	0	genome.wustl.edu	37	5	147012252	147012252	+	Silent	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	147012252	147012252	T	C	SNP	JAKMIP2	ENST00000265272	human	ensembl	74_37	-1	known	silent	c.1767	p.L589	1.000	NULL	NULL	-	no_errors	JAKMIP2	HGNC	ENSG00000176049				179	0	0	164	17	9.39227
HTR4	0	genome.wustl.edu	37	5	147889355	147889355	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	147889355	147889355	C	A	SNP	HTR4	ENST00000360693	human	ensembl	74_37	-1	known	missense	c.740	p.S247I	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_5HT4_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_5HT4_rcpt,prints_GPCR_Rhodpsn	-	no_errors	HTR4	HGNC	ENSG00000164270				55	0	0	35	10	22.2222
PCYOX1L	0	genome.wustl.edu	37	5	148745609	148745609	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	148745609	148745609	C	T	SNP	PCYOX1L	ENST00000274569	human	ensembl	74_37	+1	known	missense	c.575	p.A192V	0.993	pfam_Prenylcys_lyase,pirsf_Prenylcysteine_Oxase	pfam_Prenylcys_lyase,pirsf_Prenylcysteine_Oxase	-	no_errors	PCYOX1L	HGNC	ENSG00000145882				49	0	0	29	15	34.0909
PCYOX1L	0	genome.wustl.edu	37	5	148747580	148747580	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	148747580	148747580	C	T	SNP	PCYOX1L	ENST00000274569	human	ensembl	74_37	+1	known	missense	c.848	p.A283V	0.000	pfam_Prenylcys_lyase,pirsf_Prenylcysteine_Oxase	pfam_Prenylcys_lyase,pirsf_Prenylcysteine_Oxase	-	no_errors	PCYOX1L	HGNC	ENSG00000145882				163	0	0	120	13	9.77444
IL17B	0	genome.wustl.edu	37	5	148754023	148754023	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	148754023	148754023	C	T	SNP	IL17B	ENST00000261796	human	ensembl	74_37	-1	known	missense	c.452	p.R151H	1.000	pfam_IL-17_fam	pfam_IL-17_fam,prints_IL-17_chr	-	no_errors	IL17B	HGNC	ENSG00000127743				25	0	0	24	4	14.2857
ARHGEF37	0	genome.wustl.edu	37	5	148980761	148980761	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	148980761	148980761	G	T	SNP	ARHGEF37	ENST00000333677	human	ensembl	74_37	+1	known	missense	c.277	p.A93S	0.183	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_BAR_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF37	HGNC	ENSG00000183111				71	0	0	82	6	6.81818
PPARGC1B	0	genome.wustl.edu	37	5	149206304	149206304	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	149206304	149206304	C	T	SNP	PPARGC1B	ENST00000309241	human	ensembl	74_37	+1	known	silent	c.321	p.D107	0.718	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PPARGC1B	HGNC	ENSG00000155846				88	0	0	66	14	17.5
PDE6A	0	genome.wustl.edu	37	5	149242740	149242740	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	149242740	149242740	G	A	SNP	PDE6A	ENST00000255266	human	ensembl	74_37	-1	known	silent	c.2448	p.Y816	0.850	NULL	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE6A	HGNC	ENSG00000132915				157	0	0	104	34	24.6377
SLC26A2	0	genome.wustl.edu	37	5	149360038	149360038	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	149360038	149360038	C	T	SNP	SLC26A2	ENST00000286298	human	ensembl	74_37	+1	known	silent	c.882	p.F294	1.000	pfam_Sulph_transpt,tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A2	HGNC	ENSG00000155850				121	0	0	82	21	20.3883
CSF1R	0	genome.wustl.edu	37	5	149439266	149439266	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	149439266	149439266	C	T	SNP	CSF1R	ENST00000286301	human	ensembl	74_37	-1	known	missense	c.2129	p.R710H	0.746	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	CSF1R	HGNC	ENSG00000182578				123	0	0	100	10	9.09091
CSF1R	0	genome.wustl.edu	37	5	149441338	149441338	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	149441338	149441338	C	T	SNP	CSF1R	ENST00000286301	human	ensembl	74_37	-1	known	silent	c.1701	p.T567	0.338	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,superfamily_Kinase-like_dom	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	CSF1R	HGNC	ENSG00000182578				102	0	0	77	13	14.4444
CSF1R	0	genome.wustl.edu	37	5	149447825	149447825	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	149447825	149447825	C	T	SNP	CSF1R	ENST00000286301	human	ensembl	74_37	-1	known	missense	c.1579	p.A527T	0.996	pirsf_Tyr_kinase_CSF1/PDGF_rcpt	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	CSF1R	HGNC	ENSG00000182578				56	0	0	37	9	19.5652
CSF1R	0	genome.wustl.edu	37	5	149459840	149459840	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	149459840	149459840	C	T	SNP	CSF1R	ENST00000286301	human	ensembl	74_37	-1	known	missense	c.367	p.A123T	0.099	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,smart_Ig_sub	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	CSF1R	HGNC	ENSG00000182578				49	0	0	20	11	35.4839
CAMK2A	0	genome.wustl.edu	37	5	149631348	149631348	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	149631348	149631348	G	A	SNP	CAMK2A	ENST00000398376	human	ensembl	74_37	-1	known	missense	c.658	p.R220C	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ca/CaM-dep_prot_kinase-assoc,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CAMK2A	HGNC	ENSG00000070808				19	0	0	18	4	18.1818
TCOF1	0	genome.wustl.edu	37	5	149775932	149775932	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	149775932	149775932	C	T	SNP	TCOF1	ENST00000451292	human	ensembl	74_37	+1	known	missense	c.3980	p.A1327V	0.000	NULL	pfam_TCS_treacle,smart_LisH_dimerisation,pfscan_LisH_dimerisation,prints_Treacle-like_TCS	-	no_errors	TCOF1	HGNC	ENSG00000070814				63	0	0	34	14	29.1667
NDST1	0	genome.wustl.edu	37	5	149907766	149907766	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	149907766	149907766	G	A	SNP	NDST1	ENST00000261797	human	ensembl	74_37	+1	known	missense	c.914	p.R305H	1.000	pfam_Heparan_SO4_deacetylase	pfam_Heparan_SO4_deacetylase,pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	NDST1	HGNC	ENSG00000070614				45	0	0	33	4	10.8108
ANXA6	0	genome.wustl.edu	37	5	150489327	150489327	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	150489327	150489327	C	T	SNP	ANXA6	ENST00000354546	human	ensembl	74_37	-1	known	silent	c.1671	p.P557	0.102	pfam_Annexin_repeat,smart_Annexin_repeat	pfam_Annexin_repeat,smart_Annexin_repeat,prints_Annexin,prints_AnnexinVI,prints_AnnexinIV	-	no_errors	ANXA6	HGNC	ENSG00000197043				33	0	0	17	8	32
ANXA6	0	genome.wustl.edu	37	5	150509077	150509077	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	150509077	150509077	C	T	SNP	ANXA6	ENST00000354546	human	ensembl	74_37	-1	known	missense	c.809	p.R270Q	0.863	pfam_Annexin_repeat,smart_Annexin_repeat,prints_Annexin	pfam_Annexin_repeat,smart_Annexin_repeat,prints_Annexin,prints_AnnexinVI,prints_AnnexinIV	-	no_errors	ANXA6	HGNC	ENSG00000197043				15	0	0	8	9	52.9412
FAT2	0	genome.wustl.edu	37	5	150897291	150897291	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	150897291	150897291	G	A	SNP	FAT2	ENST00000261800	human	ensembl	74_37	-1	known	missense	c.11353	p.R3785W	0.986	superfamily_ConA-like_lec_gl_sf,pfscan_Laminin_G	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570				91	0	0	52	18	25.7143
FAT2	0	genome.wustl.edu	37	5	150922506	150922506	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	150922506	150922506	G	A	SNP	FAT2	ENST00000261800	human	ensembl	74_37	-1	known	missense	c.8182	p.R2728W	0.990	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570				83	0	0	57	15	20.8333
SPARC	0	genome.wustl.edu	37	5	151043671	151043671	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	151043671	151043671	G	A	SNP	SPARC	ENST00000231061	human	ensembl	74_37	-1	known	missense	c.860	p.A287V	1.000	pfam_SPARC/Testican_Ca-bd-dom	pfam_SPARC/Testican_Ca-bd-dom,pfam_Follistatin/Osteonectin_EGF,pfam_Kazal_dom,smart_Fol_N,smart_Kazal_dom	-	no_errors	SPARC	HGNC	ENSG00000113140				90	0	0	76	14	15.5556
HAND1	0	genome.wustl.edu	37	5	153857252	153857252	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	153857252	153857252	C	T	SNP	HAND1	ENST00000231121	human	ensembl	74_37	-1	known	missense	c.317	p.R106H	1.000	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	HAND1	HGNC	ENSG00000113196				35	0	0	23	7	23.3333
GEMIN5	0	genome.wustl.edu	37	5	154292517	154292517	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	154292517	154292517	G	A	SNP	GEMIN5	ENST00000285873	human	ensembl	74_37	-1	known	missense	c.1937	p.A646V	0.995	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	GEMIN5	HGNC	ENSG00000082516				87	0	0	69	7	9.21053
KIF4B	0	genome.wustl.edu	37	5	154393675	154393675	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	154393675	154393675	G	A	SNP	KIF4B	ENST00000435029	human	ensembl	74_37	+1	known	missense	c.256	p.A86T	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF4B	HGNC	ENSG00000226650				123	0	0	104	10	8.77193
SOX30	0	genome.wustl.edu	37	5	157053375	157053375	+	Silent	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	157053375	157053375	T	C	SNP	SOX30	ENST00000265007	human	ensembl	74_37	-1	known	silent	c.2235	p.E745	1.000	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX30	HGNC	ENSG00000039600				92	0	0	82	5	5.74713
THG1L	0	genome.wustl.edu	37	5	157159916	157159916	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	157159916	157159916	C	T	SNP	THG1L	ENST00000231198	human	ensembl	74_37	+1	known	missense	c.232	p.R78C	1.000	pfam_tRNAHis_GuaTrfase_cat,pirsf_tRNAHis_GuaTrfase_Thg1	pfam_tRNAHis_GuaTrfase_cat,superfamily_Restrct_endonuc-II-like,pirsf_tRNAHis_GuaTrfase_Thg1	-	no_errors	THG1L	HGNC	ENSG00000113272				127	0	0	99	28	22.0472
RNF145	0	genome.wustl.edu	37	5	158630640	158630640	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	158630640	158630640	T	C	SNP	RNF145	ENST00000518802	human	ensembl	74_37	-1	known	missense	c.76	p.K26E	0.001	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF145	HGNC	ENSG00000145860				49	0	0	22	10	31.25
ADRA1B	0	genome.wustl.edu	37	5	159344141	159344141	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	159344141	159344141	C	T	SNP	ADRA1B	ENST00000306675	human	ensembl	74_37	+1	known	missense	c.229	p.R77W	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_ADRA1B_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam	-	no_errors	ADRA1B	HGNC	ENSG00000170214				102	0	0	75	26	25.7426
FBXL7	0	genome.wustl.edu	37	5	15936704	15936704	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	15936704	15936704	G	A	SNP	FBXL7	ENST00000504595	human	ensembl	74_37	+1	known	silent	c.885	p.A295	0.982	smart_Leu-rich_rpt_Cys-con_subtyp	pfam_Leu-rich_rpt,pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom	-	no_errors	FBXL7	HGNC	ENSG00000183580				33	0	0	25	5	16.6667
CCNJL	0	genome.wustl.edu	37	5	159680757	159680757	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	159680757	159680757	G	A	SNP	CCNJL	ENST00000393977	human	ensembl	74_37	-1	known	silent	c.936	p.A312	0.003	superfamily_Cyclin-like	pfam_Cyclin_C-dom,pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNJL	HGNC	ENSG00000135083				29	0	0	7	4	36.3636
PLEKHG4B	0	genome.wustl.edu	37	5	162053	162053	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	162053	162053	C	T	SNP	PLEKHG4B	ENST00000283426	human	ensembl	74_37	+1	known	silent	c.1575	p.C525	0.108	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG4B	HGNC	ENSG00000153404				31	0	0	9	9	50
HMMR	0	genome.wustl.edu	37	5	162910329	162910329	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	162910329	162910329	C	T	SNP	HMMR	ENST00000393915	human	ensembl	74_37	+1	known	missense	c.1741	p.R581C	1.000	NULL	NULL	-	no_errors	HMMR	HGNC	ENSG00000072571				122	0	0	101	16	13.6752
ENSG00000241956	0	genome.wustl.edu	37	5	164028161	164028161	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	164028161	164028161	G	A	SNP	ENSG00000241956	ENST00000486913	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	CTC-340A15.2	Clone_based_vega_gene	ENSG00000241956				16	0	0	16	7	30.4348
MYO10	0	genome.wustl.edu	37	5	16673839	16673839	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	16673839	16673839	G	A	SNP	MYO10	ENST00000513610	human	ensembl	74_37	-1	known	silent	c.5124	p.G1708	0.177	pfam_Ras-assoc,smart_Band_41_domain,pfscan_FERM_domain	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_Pleckstrin_homology,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_Ras-assoc,superfamily_P-loop_NTPase,superfamily_FERM_central,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology,prints_Myosin_head_motor_dom	-	no_errors	MYO10	HGNC	ENSG00000145555				35	0	0	36	18	33.3333
TENM2	0	genome.wustl.edu	37	5	167645893	167645893	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	167645893	167645893	G	C	SNP	TENM2	ENST00000518659	human	ensembl	74_37	+1	known	missense	c.4997	p.G1666A	1.000	superfamily_Quino_amine_DH_bsu,superfamily_ConA-like_lec_gl_sf	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Quino_amine_DH_bsu,superfamily_ConA-like_lec_gl_sf,superfamily_Cytokine_IL1-like,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM2	HGNC	ENSG00000145934				161	0	0	151	10	6.21118
TENM2	0	genome.wustl.edu	37	5	167673925	167673925	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	167673925	167673925	C	T	SNP	TENM2	ENST00000518659	human	ensembl	74_37	+1	known	missense	c.5981	p.A1994V	1.000	superfamily_ConA-like_lec_gl_sf	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Quino_amine_DH_bsu,superfamily_ConA-like_lec_gl_sf,superfamily_Cytokine_IL1-like,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM2	HGNC	ENSG00000145934				94	0	0	68	6	8.10811
WWC1	0	genome.wustl.edu	37	5	167850827	167850827	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	167850827	167850827	C	T	SNP	WWC1	ENST00000265293	human	ensembl	74_37	+1	known	missense	c.1564	p.R522C	1.000	NULL	pfam_WW_dom,superfamily_C2_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	WWC1	HGNC	ENSG00000113645				26	0	0	24	4	14.2857
RARS	0	genome.wustl.edu	37	5	167944920	167944920	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	167944920	167944920	C	T	SNP	RARS	ENST00000231572	human	ensembl	74_37	+1	known	missense	c.1726	p.R576W	1.000	pfam_DALR_anticod-bd,superfamily_tRNAsynth_1a_anticodon-bd,smart_DALR_anticod-bd,tigrfam_Arg-tRNA-ligase_Ia	pfam_Arg-tRNA-synth_Ia_core,pfam_DALR_anticod-bd,pfam_Arg-tRNA-synth_N,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Arg-tRNA-synth_N,smart_DALR_anticod-bd,prints_Arg-tRNA-synth_Ia_core,tigrfam_Arg-tRNA-ligase_Ia	-	no_errors	RARS	HGNC	ENSG00000113643				117	0	0	85	12	12.3711
MYO10	0	genome.wustl.edu	37	5	16818205	16818205	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	16818205	16818205	G	A	SNP	MYO10	ENST00000513610	human	ensembl	74_37	-1	known	silent	c.192	p.G64	0.074	superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_Pleckstrin_homology,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_Ras-assoc,superfamily_P-loop_NTPase,superfamily_FERM_central,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology,prints_Myosin_head_motor_dom	-	no_errors	MYO10	HGNC	ENSG00000145555				44	0	0	22	5	18.5185
SLIT3	0	genome.wustl.edu	37	5	168671759	168671759	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	168671759	168671759	G	A	SNP	SLIT3	ENST00000519560	human	ensembl	74_37	-1	known	silent	c.291	p.V97	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_EG-like_dom,pfam_Leu-rich_rpt,pfam_Laminin_G,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl_sf,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT3	HGNC	ENSG00000184347				64	0	0	39	4	9.30233
DOCK2	0	genome.wustl.edu	37	5	169230209	169230209	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	169230209	169230209	C	T	SNP	DOCK2	ENST00000256935	human	ensembl	74_37	+1	known	missense	c.2702	p.A901V	0.478	superfamily_ARM-type_fold	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_Cyt_c-like_dom,superfamily_ARM-type_fold,superfamily_Ferritin-like_SF,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK2	HGNC	ENSG00000134516				80	0	0	53	17	24.2857
DOCK2	0	genome.wustl.edu	37	5	169463553	169463553	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	169463553	169463553	A	G	SNP	DOCK2	ENST00000256935	human	ensembl	74_37	+1	known	missense	c.3659	p.Y1220C	1.000	NULL	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_Cyt_c-like_dom,superfamily_ARM-type_fold,superfamily_Ferritin-like_SF,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK2	HGNC	ENSG00000134516				70	0	0	62	16	20.5128
FOXI1	0	genome.wustl.edu	37	5	169535053	169535053	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	169535053	169535053	G	A	SNP	FOXI1	ENST00000306268	human	ensembl	74_37	+1	known	missense	c.575	p.G192D	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXI1	HGNC	ENSG00000168269				70	0	0	37	18	32.7273
NPM1	0	genome.wustl.edu	37	5	170833403	170833403	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	170833403	170833403	G	A	SNP	NPM1	ENST00000393820	human	ensembl	74_37	+1	known	silent	c.774	p.A258	0.726	NULL	superfamily_Nucleoplasmin_core_dom	-	no_errors	NPM1	HGNC	ENSG00000181163				125	0	0	82	32	28.0702
CPEB4	0	genome.wustl.edu	37	5	173383101	173383101	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	173383101	173383101	C	T	SNP	CPEB4	ENST00000265085	human	ensembl	74_37	+1	known	silent	c.2151	p.G717	0.503	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CPEB4	HGNC	ENSG00000113742				61	0	0	54	14	20.5882
HMP19	0	genome.wustl.edu	37	5	173534516	173534516	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	173534516	173534516	C	T	SNP	HMP19	ENST00000521146	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.036	-	-	-	no_errors	NSG2	Uniprot_gn	ENSG00000170091				23	0	0	7	3	30
CPLX2	0	genome.wustl.edu	37	5	175306958	175306958	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	175306958	175306958	C	T	SNP	CPLX2	ENST00000359546	human	ensembl	74_37	+1	known	silent	c.315	p.C105	1.000	pfam_Synaphin	pfam_Synaphin	-	no_errors	CPLX2	HGNC	ENSG00000145920				22	0	0	10	3	23.0769
THOC3	0	genome.wustl.edu	37	5	175388288	175388288	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	175388288	175388288	C	T	SNP	THOC3	ENST00000265097	human	ensembl	74_37	-1	known	missense	c.779	p.R260Q	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_TIF_beta_prop-like,pfam_PD40,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	THOC3	HGNC	ENSG00000051596				35	0	0	30	13	30.2326
ENSG00000250992	0	genome.wustl.edu	37	5	175467833	175467833	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	175467833	175467833	C	T	SNP	ENSG00000250992	ENST00000509643	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-826N14.1	Clone_based_vega_gene	ENSG00000250992				37	0	0	38	6	13.6364
FAF2	0	genome.wustl.edu	37	5	175919216	175919216	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	175919216	175919216	G	A	SNP	FAF2	ENST00000261942	human	ensembl	74_37	+1	known	silent	c.366	p.R122	1.000	NULL	pfam_UBX,superfamily_UBA-like,smart_UAS,pfscan_UBX	-	no_errors	FAF2	HGNC	ENSG00000113194				118	0	0	70	27	27.8351
CDHR2	0	genome.wustl.edu	37	5	176011688	176011688	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	176011688	176011688	C	T	SNP	CDHR2	ENST00000261944	human	ensembl	74_37	+1	known	silent	c.2406	p.N802	0.822	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDHR2	HGNC	ENSG00000074276				103	1	0.961538	80	31	27.9279
NSD1	0	genome.wustl.edu	37	5	176638555	176638555	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	176638555	176638555	G	A	SNP	NSD1	ENST00000439151	human	ensembl	74_37	+1	known	missense	c.3155	p.R1052H	0.991	NULL	pfam_PWWP_dom,pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_PWWP_dom,smart_Znf_PHD,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger	-	no_errors	NSD1	HGNC	ENSG00000165671				218	0	0	137	55	28.6458
NSD1	0	genome.wustl.edu	37	5	176638998	176638998	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	176638998	176638998	C	T	SNP	NSD1	ENST00000439151	human	ensembl	74_37	+1	known	missense	c.3598	p.R1200W	0.195	NULL	pfam_PWWP_dom,pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_PWWP_dom,smart_Znf_PHD,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger	-	no_errors	NSD1	HGNC	ENSG00000165671				93	0	0	75	12	13.7931
FAM193B	0	genome.wustl.edu	37	5	176965990	176965990	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	176965990	176965990	G	A	SNP	FAM193B	ENST00000443375	human	ensembl	74_37	-1	known	silent	c.30	p.G10	1.000	NULL	NULL	-	no_errors	FAM193B	HGNC	ENSG00000146067				95	0	0	53	24	31.1688
B4GALT7	0	genome.wustl.edu	37	5	177035954	177035954	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	177035954	177035954	G	A	SNP	B4GALT7	ENST00000029410	human	ensembl	74_37	+1	known	missense	c.767	p.R256H	0.997	pfam_Galactosyl_T_C	pfam_Galactosyl_T_C,prints_Galactosyl_T	-	no_errors	B4GALT7	HGNC	ENSG00000027847				83	0	0	72	6	7.69231
CLK4	0	genome.wustl.edu	37	5	178032359	178032359	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	178032359	178032359	C	T	SNP	CLK4	ENST00000316308	human	ensembl	74_37	-1	known	missense	c.1159	p.A387T	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CLK4	HGNC	ENSG00000113240				68	0	0	51	4	7.27273
SQSTM1	0	genome.wustl.edu	37	5	179250014	179250014	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	179250014	179250014	T	C	SNP	SQSTM1	ENST00000389805	human	ensembl	74_37	+1	known	missense	c.262	p.S88P	0.852	pfam_OPR_PB1,smart_OPR_PB1	pfam_Znf_ZZ,pfam_OPR_PB1,superfamily_UBA-like,smart_OPR_PB1,smart_Znf_ZZ,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_ZZ	-	no_errors	SQSTM1	HGNC	ENSG00000161011				69	0	0	40	11	21.5686
MAPK9	0	genome.wustl.edu	37	5	179676011	179676011	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	179676011	179676011	G	A	SNP	MAPK9	ENST00000452135	human	ensembl	74_37	-1	known	missense	c.578	p.A193V	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_MAPK_JNK	-	no_errors	MAPK9	HGNC	ENSG00000050748				321	0	0	229	32	12.2605
GFPT2	0	genome.wustl.edu	37	5	179745956	179745956	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	179745956	179745956	G	A	SNP	GFPT2	ENST00000253778	human	ensembl	74_37	-1	known	silent	c.795	p.S265	0.254	tigrfam_GlmS_trans	pfam_SIS,pfam_GATase_dom,tigrfam_GlmS_trans	-	no_errors	GFPT2	HGNC	ENSG00000131459				51	0	0	45	7	13.4615
IRX4	0	genome.wustl.edu	37	5	1879729	1879729	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	1879729	1879729	G	A	SNP	IRX4	ENST00000231357	human	ensembl	74_37	-1	known	missense	c.625	p.P209S	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom	-	no_errors	IRX4	HGNC	ENSG00000113430				54	0	0	28	14	33.3333
LRRC14B	0	genome.wustl.edu	37	5	194842	194842	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	194842	194842	C	T	SNP	LRRC14B	ENST00000328278	human	ensembl	74_37	+1	novel	nonsense	c.919	p.R307*	0.129	NULL	NULL	-	no_errors	LRRC14B	HGNC	ENSG00000185028				25	0	0	19	5	20.8333
CCDC127	0	genome.wustl.edu	37	5	205673	205673	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	205673	205673	G	A	SNP	CCDC127	ENST00000296824	human	ensembl	74_37	-1	known	silent	c.522	p.C174	0.989	NULL	NULL	-	no_errors	CCDC127	HGNC	ENSG00000164366				62	0	0	50	11	18.0328
CDH12	0	genome.wustl.edu	37	5	21752162	21752162	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	21752162	21752162	C	T	SNP	CDH12	ENST00000382254	human	ensembl	74_37	-1	known	missense	c.2069	p.R690H	1.000	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH12	HGNC	ENSG00000154162				70	0	0	73	13	15.1163
SDHA	0	genome.wustl.edu	37	5	226056	226056	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	226056	226056	C	T	SNP	SDHA	ENST00000264932	human	ensembl	74_37	+1	known	missense	c.515	p.A172V	1.000	pfam_FAD_bind_dom,tigrfam_Succ_DH_flav_su_fwd,tigrfam_Succ_Dhase_FrdA_Gneg	pfam_FAD_bind_dom,pfam_Fum_Rdtase/Succ_DH_flav-like_C,superfamily_Succ_DH/fumarate_Rdtase_cat,superfamily_Fum_Rdtase/Succ_DH_flav-like_C,tigrfam_Succ_DH_flav_su_fwd,tigrfam_Succ_Dhase_FrdA_Gneg	-	no_errors	SDHA	HGNC	ENSG00000073578				120	0	0	120	8	6.25
PRDM9	0	genome.wustl.edu	37	5	23509190	23509190	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	23509190	23509190	G	A	SNP	PRDM9	ENST00000296682	human	ensembl	74_37	+1	known	silent	c.48	p.E16	0.003	NULL	pfam_Znf_C2H2,pfam_SSXRD_motif,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	PRDM9	HGNC	ENSG00000164256				49	0	0	37	13	26
CDH10	0	genome.wustl.edu	37	5	24492981	24492981	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	24492981	24492981	T	A	SNP	CDH10	ENST00000264463	human	ensembl	74_37	-1	known	missense	c.1569	p.K523N	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH10	HGNC	ENSG00000040731				189	1	0.526316	149	54	26.601
CDH10	0	genome.wustl.edu	37	5	24498629	24498629	+	Splice_Site	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	24498629	24498629	C	A	SNP	CDH10	ENST00000264463	human	ensembl	74_37	-1	known	splice_site	c.1394-1	e8-1	1.000	-	-	-	no_errors	CDH10	HGNC	ENSG00000040731				85	0	0	66	18	21.4286
CDH10	0	genome.wustl.edu	37	5	24505247	24505247	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	24505247	24505247	T	A	SNP	CDH10	ENST00000264463	human	ensembl	74_37	-1	known	missense	c.1367	p.N456I	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH10	HGNC	ENSG00000040731				91	0	0	46	27	36.9863
CDH10	0	genome.wustl.edu	37	5	24535840	24535840	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	24535840	24535840	C	A	SNP	CDH10	ENST00000264463	human	ensembl	74_37	-1	known	missense	c.618	p.Q206H	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH10	HGNC	ENSG00000040731				79	0	0	54	20	27.027
CDH9	0	genome.wustl.edu	37	5	26885767	26885767	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	26885767	26885767	G	A	SNP	CDH9	ENST00000231021	human	ensembl	74_37	-1	known	missense	c.1838	p.T613M	0.999	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH9	HGNC	ENSG00000113100				31	0	0	34	6	15
IRX2	0	genome.wustl.edu	37	5	2748620	2748620	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	2748620	2748620	G	A	SNP	IRX2	ENST00000302057	human	ensembl	74_37	-1	known	missense	c.1202	p.A401V	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom	-	no_errors	IRX2	HGNC	ENSG00000170561				26	0	0	14	3	17.6471
C5orf22	0	genome.wustl.edu	37	5	31541102	31541102	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	31541102	31541102	G	A	SNP	C5orf22	ENST00000325366	human	ensembl	74_37	+1	known	missense	c.854	p.G285D	0.000	superfamily_ICAT	superfamily_ICAT	-	no_errors	C5orf22	HGNC	ENSG00000082213				96	0	0	81	19	19
PDZD2	0	genome.wustl.edu	37	5	31799525	31799525	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	31799525	31799525	T	C	SNP	PDZD2	ENST00000282493	human	ensembl	74_37	+1	known	missense	c.170	p.V57A	0.002	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD2	HGNC	ENSG00000133401				131	0	0	96	28	22.5806
ZFR	0	genome.wustl.edu	37	5	32380215	32380215	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	32380215	32380215	G	A	SNP	ZFR	ENST00000265069	human	ensembl	74_37	-1	known	missense	c.2705	p.A902V	1.000	pfam_DZF,smart_DZF	pfam_DZF,pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like,smart_DZF	-	no_errors	ZFR	HGNC	ENSG00000056097				81	0	0	62	5	7.46269
ZFR	0	genome.wustl.edu	37	5	32415139	32415139	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	32415139	32415139	G	A	SNP	ZFR	ENST00000265069	human	ensembl	74_37	-1	known	missense	c.719	p.A240V	1.000	NULL	pfam_DZF,pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like,smart_DZF	-	no_errors	ZFR	HGNC	ENSG00000056097				64	0	0	41	9	18
NPR3	0	genome.wustl.edu	37	5	32712628	32712628	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	32712628	32712628	G	A	SNP	NPR3	ENST00000265074	human	ensembl	74_37	+1	known	missense	c.746	p.R249H	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_Ntpep_rcpt	-	no_errors	NPR3	HGNC	ENSG00000113389				117	0	0	107	20	15.748
TARS	0	genome.wustl.edu	37	5	33453456	33453456	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	33453456	33453456	G	A	SNP	TARS	ENST00000265112	human	ensembl	74_37	+1	known	missense	c.392	p.R131H	1.000	pfam_TGS,superfamily_TGS-like	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_TGS,pfam_tRNA_SAD,superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_Anticodon-bd,superfamily_TGS-like,smart_tRNA_SAD,prints_Thr-tRNA-ligase_IIa,pfscan_aa-tRNA-synth_II,tigrfam_Thr-tRNA-ligase_IIa	-	no_errors	TARS	HGNC	ENSG00000113407				123	0	0	107	21	16.4062
RXFP3	0	genome.wustl.edu	37	5	33937066	33937066	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	33937066	33937066	C	T	SNP	RXFP3	ENST00000330120	human	ensembl	74_37	+1	known	missense	c.221	p.A74V	0.001	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Formyl_pep_rcpt	-	no_errors	RXFP3	HGNC	ENSG00000182631				27	0	0	10	4	28.5714
RXFP3	0	genome.wustl.edu	37	5	33938061	33938061	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	33938061	33938061	C	T	SNP	RXFP3	ENST00000330120	human	ensembl	74_37	+1	known	missense	c.1216	p.R406C	0.994	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Formyl_pep_rcpt	-	no_errors	RXFP3	HGNC	ENSG00000182631				32	0	0	41	5	10.8696
TTC23L	0	genome.wustl.edu	37	5	34850347	34850347	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	34850347	34850347	G	T	SNP	TTC23L	ENST00000505624	human	ensembl	74_37	+1	known	missense	c.313	p.G105W	1.000	NULL	NULL	-	no_errors	TTC23L	HGNC	ENSG00000205838				197	0	0	165	42	20.2899
SKP2	0	genome.wustl.edu	37	5	36168477	36168477	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	36168477	36168477	G	A	SNP	SKP2	ENST00000274255	human	ensembl	74_37	+1	known	missense	c.599	p.G200D	0.017	NULL	pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom	-	no_errors	SKP2	HGNC	ENSG00000145604				251	1	0.396825	200	34	14.5299
NIPBL	0	genome.wustl.edu	37	5	37006526	37006526	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	37006526	37006526	C	T	SNP	NIPBL	ENST00000282516	human	ensembl	74_37	+1	known	missense	c.3923	p.A1308V	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	NIPBL	HGNC	ENSG00000164190				121	0	0	75	14	15.7303
NIPBL	0	genome.wustl.edu	37	5	37064103	37064103	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	37064103	37064103	G	A	SNP	NIPBL	ENST00000448238	human	ensembl	74_37	+1	known	missense	c.8072	p.R2691H	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	NIPBL	HGNC	ENSG00000164190				42	0	0	18	13	41.9355
C5orf42	0	genome.wustl.edu	37	5	37196023	37196023	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	37196023	37196023	C	T	SNP	C5orf42	ENST00000425232	human	ensembl	74_37	-1	known	missense	c.3748	p.A1250T	0.000	NULL	superfamily_Quino_amine_DH_bsu	-	no_errors	C5orf42	HGNC	ENSG00000197603				90	0	0	66	12	15.3846
RICTOR	0	genome.wustl.edu	37	5	39002706	39002706	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	39002706	39002706	C	T	SNP	RICTOR	ENST00000296782	human	ensembl	74_37	-1	known	missense	c.323	p.R108Q	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	RICTOR	HGNC	ENSG00000164327				149	0	0	164	10	5.74713
C9	0	genome.wustl.edu	37	5	39341719	39341719	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	39341719	39341719	C	T	SNP	C9	ENST00000263408	human	ensembl	74_37	-1	known	silent	c.267	p.V89	0.023	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_MACPF,pfam_LDrepeatLR_classA_rpt,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,prints_MAC_perforin,pfscan_LDrepeatLR_classA_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	C9	HGNC	ENSG00000113600				95	0	0	61	19	23.75
DAB2	0	genome.wustl.edu	37	5	39388941	39388941	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	39388941	39388941	G	A	SNP	DAB2	ENST00000320816	human	ensembl	74_37	-1	known	missense	c.584	p.A195V	0.001	pfscan_PTB/PI_dom	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	-	no_errors	DAB2	HGNC	ENSG00000153071				95	0	0	99	12	10.8108
C7	0	genome.wustl.edu	37	5	40959677	40959677	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	40959677	40959677	C	T	SNP	C7	ENST00000313164	human	ensembl	74_37	+1	known	missense	c.1616	p.T539M	0.006	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_MACPF,pfam_Sushi_SCR_CCP,pfam_LDrepeatLR_classA_rpt,pfam_Thrombospondin_1_rpt,superfamily_Sushi_SCR_CCP,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,smart_Sushi_SCR_CCP,smart_FacI_MAC,pfscan_LDrepeatLR_classA_rpt,pfscan_Sushi_SCR_CCP,pfscan_Thrombospondin_1_rpt,prints_MAC_perforin	-	no_errors	C7	HGNC	ENSG00000112936				40	0	0	32	4	11.1111
FBXO4	0	genome.wustl.edu	37	5	41927346	41927346	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	41927346	41927346	G	A	SNP	FBXO4	ENST00000281623	human	ensembl	74_37	+1	known	missense	c.421	p.A141T	0.996	superfamily_F-box_dom	pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXO4	HGNC	ENSG00000151876				90	0	0	76	9	10.5882
CCL28	0	genome.wustl.edu	37	5	43388544	43388544	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	43388544	43388544	C	T	SNP	CCL28	ENST00000361115	human	ensembl	74_37	-1	known	silent	c.99	p.E33	0.892	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom	-	no_errors	CCL28	HGNC	ENSG00000151882				80	0	0	72	9	11.1111
C5orf34	0	genome.wustl.edu	37	5	43494677	43494677	+	Silent	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	43494677	43494677	A	G	SNP	C5orf34	ENST00000306862	human	ensembl	74_37	-1	known	silent	c.1179	p.N393	1.000	NULL	NULL	-	no_errors	C5orf34	HGNC	ENSG00000172244				64	0	0	53	7	11.6667
FGF10	0	genome.wustl.edu	37	5	44305128	44305128	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	44305128	44305128	G	A	SNP	FGF10	ENST00000264664	human	ensembl	74_37	-1	known	missense	c.596	p.A199V	1.000	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam	-	no_errors	FGF10	HGNC	ENSG00000070193				142	0	0	121	34	21.9355
MRPS30	0	genome.wustl.edu	37	5	44811197	44811197	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	44811197	44811197	C	T	SNP	MRPS30	ENST00000507110	human	ensembl	74_37	+1	known	nonsense	c.688	p.R230*	0.371	pfam_Ribosomal_L37/S30	pfam_Ribosomal_L37/S30	-	no_errors	MRPS30	HGNC	ENSG00000112996				131	0	0	93	25	21.1864
HCN1	0	genome.wustl.edu	37	5	45267276	45267276	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	45267276	45267276	C	T	SNP	HCN1	ENST00000303230	human	ensembl	74_37	-1	known	silent	c.1698	p.V566	1.000	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	HCN1	HGNC	ENSG00000164588				114	0	0	99	37	27.2059
EXOC3	0	genome.wustl.edu	37	5	453727	453727	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	453727	453727	C	T	SNP	EXOC3	ENST00000315013	human	ensembl	74_37	+1	known	missense	c.607	p.R203C	1.000	pfam_Sec6	pfam_Sec6	-	no_errors	EXOC3	HGNC	ENSG00000180104				80	0	0	90	5	5.26316
SLC9A3	0	genome.wustl.edu	37	5	492080	492080	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	492080	492080	C	T	SNP	SLC9A3	ENST00000264938	human	ensembl	74_37	-1	known	silent	c.318	p.A106	0.995	pfam_Cation/H_exchanger,prints_Na/H_exchanger_3/5,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,superfamily_Reg_factor_effector_dom,prints_Na/H_exchanger_3/5,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A3	HGNC	ENSG00000066230				15	0	0	12	6	33.3333
PELO	0	genome.wustl.edu	37	5	52096901	52096901	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	52096901	52096901	G	A	SNP	PELO	ENST00000274311	human	ensembl	74_37	+1	known	missense	c.673	p.A225T	1.000	pfam_eRF1_2,tigrfam_Transl_rel_pelota-like	pfam_eRF1_1_Pelota,pfam_eRF1_2,pfam_eRF1_3,tigrfam_Transl_rel_pelota-like	-	no_errors	PELO	HGNC	ENSG00000152684				78	0	0	63	16	20.2532
SNX18	0	genome.wustl.edu	37	5	53815142	53815142	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	53815142	53815142	C	T	SNP	SNX18	ENST00000326277	human	ensembl	74_37	+1	known	missense	c.1360	p.R454C	1.000	pfam_Sorting_nexin_WASP-bd-dom,pirsf_Snx9	pfam_Sorting_nexin_WASP-bd-dom,pfam_Phox,pfam_SH3_domain,pfam_SH3_2,superfamily_Phox,superfamily_SH3_domain,smart_SH3_domain,smart_Phox,pirsf_Snx9,pfscan_Phox,pfscan_SH3_domain	-	no_errors	SNX18	HGNC	ENSG00000178996				61	0	0	41	8	16.3265
KIAA0947	0	genome.wustl.edu	37	5	5461451	5461451	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	5461451	5461451	G	A	SNP	KIAA0947	ENST00000296564	human	ensembl	74_37	+1	known	silent	c.2004	p.P668	0.000	NULL	superfamily_Vitellinogen_superhlx	-	no_errors	KIAA0947	HGNC	ENSG00000164151				89	0	0	56	7	11.1111
KIAA0947	0	genome.wustl.edu	37	5	5464600	5464600	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	5464600	5464600	C	T	SNP	KIAA0947	ENST00000296564	human	ensembl	74_37	+1	known	missense	c.5153	p.A1718V	0.999	NULL	superfamily_Vitellinogen_superhlx	-	no_errors	KIAA0947	HGNC	ENSG00000164151				77	0	0	60	14	18.9189
KIAA0947	0	genome.wustl.edu	37	5	5489418	5489418	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	5489418	5489418	C	T	SNP	KIAA0947	ENST00000296564	human	ensembl	74_37	+1	known	missense	c.6776	p.A2259V	0.000	superfamily_Vitellinogen_superhlx	superfamily_Vitellinogen_superhlx	-	no_errors	KIAA0947	HGNC	ENSG00000164151				35	0	0	26	4	13.3333
DDX4	0	genome.wustl.edu	37	5	55082359	55082359	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	55082359	55082359	C	T	SNP	DDX4	ENST00000505374	human	ensembl	74_37	+1	known	missense	c.878	p.A293V	1.000	superfamily_P-loop_NTPase,pfscan_RNA_helicase_DEAD_Q_motif	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX4	HGNC	ENSG00000152670				58	0	0	61	4	6.15385
MAP3K1	0	genome.wustl.edu	37	5	56155650	56155650	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	56155650	56155650	C	T	SNP	MAP3K1	ENST00000399503	human	ensembl	74_37	+1	novel	nonsense	c.742	p.R248*	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015				41	0	0	28	7	20
MAP3K1	0	genome.wustl.edu	37	5	56160643	56160643	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	56160643	56160643	G	A	SNP	MAP3K1	ENST00000399503	human	ensembl	74_37	+1	novel	missense	c.917	p.R306H	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015				71	0	0	80	10	11.1111
GPBP1	0	genome.wustl.edu	37	5	56542211	56542211	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	56542211	56542211	T	C	SNP	GPBP1	ENST00000424459	human	ensembl	74_37	+1	known	missense	c.623	p.F208S	1.000	NULL	NULL	-	no_errors	GPBP1	HGNC	ENSG00000062194				78	0	0	82	10	10.8696
RAB3C	0	genome.wustl.edu	37	5	58120962	58120962	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	58120962	58120962	C	T	SNP	RAB3C	ENST00000282878	human	ensembl	74_37	+1	known	nonsense	c.469	p.R157*	1.000	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_Gtr1_RagA,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB3C	HGNC	ENSG00000152932				75	0	0	44	16	26.6667
FLJ33360	0	genome.wustl.edu	37	5	6337301	6337301	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	6337301	6337301	C	T	SNP	FLJ33360	ENST00000507444	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	CTD-2324F15.2	Clone_based_vega_gene	ENSG00000250490				139	0	0	102	30	22.7273
NLN	0	genome.wustl.edu	37	5	65118709	65118709	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	65118709	65118709	C	T	SNP	NLN	ENST00000380985	human	ensembl	74_37	+1	known	missense	c.2081	p.A694V	1.000	pfam_Pept_M3A_M3B	pfam_Pept_M3A_M3B	-	no_errors	NLN	HGNC	ENSG00000123213				133	0	0	91	32	26.0163
ERBB2IP	0	genome.wustl.edu	37	5	65340041	65340041	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	65340041	65340041	T	C	SNP	ERBB2IP	ENST00000284037	human	ensembl	74_37	+1	known	missense	c.1505	p.V502A	1.000	NULL	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	ERBB2IP	HGNC	ENSG00000112851				110	0	0	100	6	5.66038
ERBB2IP	0	genome.wustl.edu	37	5	65349316	65349316	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	65349316	65349316	G	A	SNP	ERBB2IP	ENST00000284037	human	ensembl	74_37	+1	known	missense	c.2170	p.D724N	0.982	NULL	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	ERBB2IP	HGNC	ENSG00000112851				110	0	0	83	27	24.5455
MAST4	0	genome.wustl.edu	37	5	66396393	66396393	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	66396393	66396393	C	A	SNP	MAST4	ENST00000404260	human	ensembl	74_37	+1	known	missense	c.1052	p.P351Q	0.380	pfam_MA_Ser/Thr_Kinase_dom	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_dom	-	no_errors	MAST4	HGNC	ENSG00000069020				82	0	0	60	24	28.5714
MAST4	0	genome.wustl.edu	37	5	66460439	66460439	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	66460439	66460439	C	T	SNP	MAST4	ENST00000404260	human	ensembl	74_37	+1	known	missense	c.5441	p.S1814F	0.995	NULL	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_dom	-	no_errors	MAST4	HGNC	ENSG00000069020				107	0	0	78	10	11.3636
BDP1	0	genome.wustl.edu	37	5	70805292	70805292	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	70805292	70805292	C	T	SNP	BDP1	ENST00000358731	human	ensembl	74_37	+1	known	silent	c.2373	p.S791	0.615	NULL	superfamily_Homeodomain-like,smart_SANT/Myb	-	no_errors	BDP1	HGNC	ENSG00000145734				118	0	0	90	8	8.16327
CARTPT	0	genome.wustl.edu	37	5	71016372	71016372	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	71016372	71016372	C	T	SNP	CARTPT	ENST00000296777	human	ensembl	74_37	+1	known	missense	c.281	p.A94V	1.000	pfam_CART,superfamily_CART	pfam_CART,superfamily_CART	-	no_errors	CARTPT	HGNC	ENSG00000164326				27	0	0	27	6	18.1818
MAP1B	0	genome.wustl.edu	37	5	71491738	71491738	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	71491738	71491738	G	T	SNP	MAP1B	ENST00000296755	human	ensembl	74_37	+1	known	missense	c.2556	p.K852N	0.952	NULL	pfam_MAP1B_neuraxin	-	no_errors	MAP1B	HGNC	ENSG00000131711				253	0	0	232	28	10.7692
ZNF366	0	genome.wustl.edu	37	5	71743088	71743088	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	71743088	71743088	G	A	SNP	ZNF366	ENST00000318442	human	ensembl	74_37	-1	known	missense	c.1681	p.R561W	0.996	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF366	HGNC	ENSG00000178175				87	0	0	46	16	25.8065
TMEM171	0	genome.wustl.edu	37	5	72427511	72427511	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	72427511	72427511	C	T	SNP	TMEM171	ENST00000454765	human	ensembl	74_37	+1	known	missense	c.929	p.A310V	0.013	NULL	NULL	-	no_errors	TMEM171	HGNC	ENSG00000157111				123	0	0	92	28	23.3333
ARHGEF28	0	genome.wustl.edu	37	5	73069726	73069726	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	73069726	73069726	C	T	SNP	ARHGEF28	ENST00000545377	human	ensembl	74_37	+1	known	silent	c.522	p.G174	1.000	superfamily_Ankyrin_rpt-contain_dom	pfam_DH-domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	ARHGEF28	HGNC	ENSG00000214944				14	0	0	13	5	27.7778
ENC1	0	genome.wustl.edu	37	5	73931937	73931937	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	73931937	73931937	T	C	SNP	ENC1	ENST00000302351	human	ensembl	74_37	-1	known	missense	c.374	p.D125G	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	ENC1	HGNC	ENSG00000171617				108	0	0	80	24	23.0769
IQGAP2	0	genome.wustl.edu	37	5	75893291	75893291	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	75893291	75893291	C	T	SNP	IQGAP2	ENST00000274364	human	ensembl	74_37	+1	known	missense	c.935	p.A312V	0.884	NULL	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_CH-domain,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_WW_dom,pfscan_RasGAP	-	no_errors	IQGAP2	HGNC	ENSG00000145703				59	0	0	46	6	11.5385
IQGAP2	0	genome.wustl.edu	37	5	75948620	75948620	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	75948620	75948620	C	T	SNP	IQGAP2	ENST00000274364	human	ensembl	74_37	+1	known	missense	c.2140	p.R714W	0.868	superfamily_P-loop_NTPase,pfscan_IQ_motif_EF-hand-BS	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_CH-domain,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_WW_dom,pfscan_RasGAP	-	no_errors	IQGAP2	HGNC	ENSG00000145703				126	0	0	91	23	20.1754
IQGAP2	0	genome.wustl.edu	37	5	75967720	75967720	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	75967720	75967720	G	A	SNP	IQGAP2	ENST00000274364	human	ensembl	74_37	+1	known	missense	c.2980	p.D994N	0.997	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,smart_RasGAP,pfscan_RasGAP	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_CH-domain,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_WW_dom,pfscan_RasGAP	-	no_errors	IQGAP2	HGNC	ENSG00000145703				60	0	0	50	15	23.0769
WDR41	0	genome.wustl.edu	37	5	76729078	76729078	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	76729078	76729078	G	A	SNP	WDR41	ENST00000296679	human	ensembl	74_37	-1	known	missense	c.1262	p.T421M	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR41	HGNC	ENSG00000164253				72	0	0	50	16	24.2424
BHMT2	0	genome.wustl.edu	37	5	78379533	78379533	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	78379533	78379533	C	T	SNP	BHMT2	ENST00000255192	human	ensembl	74_37	+1	known	silent	c.864	p.G288	0.182	pfam_S_MeTrfase,superfamily_S_MeTrfase,pirsf_Betaine-hCys_S-MeTrfase_BHMT,pfscan_S_MeTrfase	pfam_S_MeTrfase,superfamily_S_MeTrfase,pirsf_Betaine-hCys_S-MeTrfase_BHMT,pfscan_S_MeTrfase	-	no_errors	BHMT2	HGNC	ENSG00000132840				42	0	0	35	9	20.4545
BHMT	0	genome.wustl.edu	37	5	78415085	78415085	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	78415085	78415085	G	A	SNP	BHMT	ENST00000274353	human	ensembl	74_37	+1	known	missense	c.170	p.R57H	1.000	pfam_S_MeTrfase,superfamily_S_MeTrfase,pirsf_Betaine-hCys_S-MeTrfase_BHMT,pfscan_S_MeTrfase	pfam_S_MeTrfase,superfamily_S_MeTrfase,pirsf_Betaine-hCys_S-MeTrfase_BHMT,pfscan_S_MeTrfase	-	no_errors	BHMT	HGNC	ENSG00000145692				105	1	0.943396	77	8	9.41176
THBS4	0	genome.wustl.edu	37	5	79357547	79357547	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	79357547	79357547	G	A	SNP	THBS4	ENST00000350881	human	ensembl	74_37	+1	known	silent	c.1017	p.V339	0.983	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_Thrombospondin_C,pfam_Thbs/COMP_coiled-coil,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	THBS4	HGNC	ENSG00000113296				85	0	0	68	7	9.33333
SERINC5	0	genome.wustl.edu	37	5	79498704	79498704	+	Splice_Site	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	79498704	79498704	C	T	SNP	SERINC5	ENST00000509193	human	ensembl	74_37	-1	known	splice_site	c.195+1	e2+1	1.000	-	-	-	no_errors	SERINC5	HGNC	ENSG00000164300				69	0	0	57	5	8.06452
ZFYVE16	0	genome.wustl.edu	37	5	79733039	79733039	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	79733039	79733039	G	A	SNP	ZFYVE16	ENST00000338008	human	ensembl	74_37	+1	known	missense	c.535	p.D179N	0.877	pirsf_Znf_FYVE_SARA/endofin	pfam_DUF3480,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pirsf_Znf_FYVE_SARA/endofin,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE16	HGNC	ENSG00000039319				102	0	0	64	10	13.5135
CKMT2	0	genome.wustl.edu	37	5	80548572	80548572	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	80548572	80548572	G	A	SNP	CKMT2	ENST00000254035	human	ensembl	74_37	+1	known	missense	c.211	p.A71T	0.056	pfam_ATP-guanido_PTrfase_N,superfamily_ATP-guanido_PTrfase_N	pfam_ATP-guanido_PTrfase_cat,pfam_ATP-guanido_PTrfase_N,superfamily_ATP-guanido_PTrfase_N	-	no_errors	CKMT2	HGNC	ENSG00000131730				69	0	0	51	25	32.8947
XRCC4	0	genome.wustl.edu	37	5	82406986	82406986	+	Silent	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	82406986	82406986	T	C	SNP	XRCC4	ENST00000338635	human	ensembl	74_37	+1	known	silent	c.279	p.C93	0.765	pfam_DNA_repair_prot_XRCC4,superfamily_XRCC4_N	pfam_DNA_repair_prot_XRCC4,superfamily_XRCC4_N	-	no_errors	XRCC4	HGNC	ENSG00000152422				58	0	0	37	13	26
NBPF22P	0	genome.wustl.edu	37	5	85592175	85592175	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	85592175	85592175	C	T	SNP	NBPF22P	ENST00000590707	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.010	-	-	-	no_errors	NBPF22P	HGNC	ENSG00000205449				26	0	0	11	8	42.1053
MEF2C	0	genome.wustl.edu	37	5	88100421	88100421	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	88100421	88100421	G	A	SNP	MEF2C	ENST00000437473	human	ensembl	74_37	-1	known	silent	c.252	p.I84	0.999	superfamily_TF_MADSbox	pfam_TF_MADSbox,pfam_HJURP_C,superfamily_TF_MADSbox,smart_TF_MADSbox,prints_TF_MADSbox,pfscan_TF_MADSbox	-	no_errors	MEF2C	HGNC	ENSG00000081189				47	0	0	49	6	10.9091
NR2F1	0	genome.wustl.edu	37	5	92929574	92929574	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	92929574	92929574	G	A	SNP	NR2F1	ENST00000506162	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.004	-	-	-	no_errors	NR2F1	HGNC	ENSG00000175745				73	0	0	32	21	39.6226
MCTP1	0	genome.wustl.edu	37	5	94267673	94267673	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	94267673	94267673	C	T	SNP	MCTP1	ENST00000515393	human	ensembl	74_37	-1	known	nonsense	c.1197	p.W399*	1.000	NULL	pfam_C2_dom,pfam_PRibTrfase_C,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_C2_dom	-	no_errors	MCTP1	HGNC	ENSG00000175471				190	0	0	170	44	20.5607
RHOBTB3	0	genome.wustl.edu	37	5	95072640	95072640	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	95072640	95072640	C	T	SNP	RHOBTB3	ENST00000379982	human	ensembl	74_37	+1	known	silent	c.276	p.G92	0.002	pfam_Small_GTPase,superfamily_P-loop_NTPase	pfam_BTB_POZ,pfam_Small_GTPase,superfamily_BTB/POZ_fold,superfamily_P-loop_NTPase,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	RHOBTB3	HGNC	ENSG00000164292				99	0	0	65	19	22.619
PCSK1	0	genome.wustl.edu	37	5	95728946	95728946	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	95728946	95728946	G	A	SNP	PCSK1	ENST00000311106	human	ensembl	74_37	-1	known	missense	c.2021	p.A674V	1.000	NULL	pfam_Peptidase_S8/S53_dom,pfam_PrprotnconvertsP,pfam_Proho_convert,superfamily_Peptidase_S8/S53_dom,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK1	HGNC	ENSG00000175426				80	0	0	53	18	25.3521
CHD1	0	genome.wustl.edu	37	5	98232112	98232112	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	98232112	98232112	G	T	SNP	CHD1	ENST00000284049	human	ensembl	74_37	-1	known	missense	c.1528	p.L510I	1.000	pfam_SNF2_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Homeodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD1	HGNC	ENSG00000153922				70	0	0	44	13	22.807
CHD1	0	genome.wustl.edu	37	5	98240797	98240797	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	98240797	98240797	G	A	SNP	CHD1	ENST00000284049	human	ensembl	74_37	-1	known	missense	c.59	p.S20L	1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Homeodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD1	HGNC	ENSG00000153922				120	0	0	76	24	24
PRDM13	0	genome.wustl.edu	37	6	100062403	100062403	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	100062403	100062403	G	A	SNP	PRDM13	ENST00000369215	human	ensembl	74_37	+1	known	missense	c.1892	p.R631H	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM13	HGNC	ENSG00000112238				25	0	0	18	9	33.3333
MCHR2	0	genome.wustl.edu	37	6	100403950	100403950	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	100403950	100403950	G	T	SNP	MCHR2	ENST00000281806	human	ensembl	74_37	-1	known	missense	c.74	p.A25D	0.994	prints_MCH2_receptor	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_MCH2_receptor,prints_GPCR_Rhodpsn,prints_MCH_rcpt	-	no_errors	MCHR2	HGNC	ENSG00000152034				135	0	0	124	12	8.82353
SIM1	0	genome.wustl.edu	37	6	100897563	100897563	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	100897563	100897563	C	T	SNP	SIM1	ENST00000262901	human	ensembl	74_37	-1	known	missense	c.361	p.G121R	1.000	pfam_PAS_fold,superfamily_PAS,smart_PAS,pfscan_PAS	pfam_SIM_C,pfam_PAS_fold_3,pfam_PAS_fold,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	SIM1	HGNC	ENSG00000112246				34	0	0	27	8	22.8571
ASCC3	0	genome.wustl.edu	37	6	101109778	101109778	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	101109778	101109778	C	T	SNP	ASCC3	ENST00000369162	human	ensembl	74_37	-1	known	silent	c.2607	p.T869	0.049	superfamily_P-loop_NTPase,pfscan_Helicase_C	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_AAA+_ATPase,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ASCC3	HGNC	ENSG00000112249				151	0	0	135	26	16.1491
ASCC3	0	genome.wustl.edu	37	6	101165958	101165958	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	101165958	101165958	G	A	SNP	ASCC3	ENST00000369162	human	ensembl	74_37	-1	known	missense	c.2072	p.A691V	1.000	superfamily_P-loop_NTPase	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_AAA+_ATPase,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ASCC3	HGNC	ENSG00000112249				99	0	0	76	5	6.17284
ASCC3	0	genome.wustl.edu	37	6	101215064	101215064	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	101215064	101215064	C	T	SNP	ASCC3	ENST00000369162	human	ensembl	74_37	-1	known	missense	c.1553	p.R518H	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_AAA+_ATPase,pfscan_Helicase_ATP-bd	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_AAA+_ATPase,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ASCC3	HGNC	ENSG00000112249				109	0	0	91	13	12.5
GRIK2	0	genome.wustl.edu	37	6	101847167	101847167	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	101847167	101847167	T	A	SNP	GRIK2	ENST00000421544	human	ensembl	74_37	+1	known	missense	c.14	p.F5Y	1.000	NULL	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK2	HGNC	ENSG00000164418				93	0	0	65	10	13.3333
GRIK2	0	genome.wustl.edu	37	6	102074360	102074360	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	102074360	102074360	T	C	SNP	GRIK2	ENST00000421544	human	ensembl	74_37	+1	known	missense	c.389	p.I130T	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK2	HGNC	ENSG00000164418				140	0	0	116	16	12.1212
HACE1	0	genome.wustl.edu	37	6	105244857	105244857	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	105244857	105244857	C	T	SNP	HACE1	ENST00000262903	human	ensembl	74_37	-1	known	missense	c.661	p.A221T	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_HECT,pfam_Ankyrin_rpt,superfamily_HECT,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_HECT,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_HECT,prints_Ankyrin_rpt	-	no_errors	HACE1	HGNC	ENSG00000085382				80	0	0	66	9	12
POPDC3	0	genome.wustl.edu	37	6	105609713	105609713	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	105609713	105609713	C	A	SNP	POPDC3	ENST00000254765	human	ensembl	74_37	-1	known	missense	c.72	p.E24D	0.997	NULL	pfam_Popeye_prot,superfamily_cNMP-bd-like	-	no_errors	POPDC3	HGNC	ENSG00000132429				117	0	0	96	31	24.4094
PREP	0	genome.wustl.edu	37	6	105730445	105730445	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	105730445	105730445	G	A	SNP	PREP	ENST00000369110	human	ensembl	74_37	-1	known	missense	c.1562	p.A521V	1.000	pfam_Peptidase_S9	pfam_Pept_S9A_N,pfam_Peptidase_S9,prints_Peptidase_S9A	-	no_errors	PREP	HGNC	ENSG00000085377				130	0	0	127	19	13.0137
PREP	0	genome.wustl.edu	37	6	105736746	105736746	+	Silent	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	105736746	105736746	A	G	SNP	PREP	ENST00000369110	human	ensembl	74_37	-1	known	silent	c.1341	p.G447	1.000	NULL	pfam_Pept_S9A_N,pfam_Peptidase_S9,prints_Peptidase_S9A	-	no_errors	PREP	HGNC	ENSG00000085377				79	0	0	57	16	21.9178
GCNT2	0	genome.wustl.edu	37	6	10586430	10586430	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	10586430	10586430	C	T	SNP	GCNT2	ENST00000265012	human	ensembl	74_37	+1	known	nonsense	c.208	p.R70*	0.002	NULL	pfam_Glyco_trans_14	-	no_errors	GCNT2	HGNC	ENSG00000111846				138	0	0	148	10	6.32911
PRDM1	0	genome.wustl.edu	37	6	106553770	106553770	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	106553770	106553770	G	A	SNP	PRDM1	ENST00000369096	human	ensembl	74_37	+1	known	missense	c.1735	p.V579I	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pirsf_Znf_PRDM1,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pirsf_Znf_PRDM1,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM1	HGNC	ENSG00000057657				83	0	0	69	7	9.21053
SOBP	0	genome.wustl.edu	37	6	107956476	107956476	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	107956476	107956476	G	A	SNP	SOBP	ENST00000317357	human	ensembl	74_37	+1	known	missense	c.2428	p.A810T	1.000	NULL	NULL	-	no_errors	SOBP	HGNC	ENSG00000112320				60	0	0	50	21	29.5775
MAK	0	genome.wustl.edu	37	6	10809075	10809075	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	10809075	10809075	C	T	SNP	MAK	ENST00000313243	human	ensembl	74_37	-1	known	silent	c.459	p.Q153	0.999	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAK	HGNC	ENSG00000111837				141	0	0	150	27	15.2542
GCM2	0	genome.wustl.edu	37	6	10875058	10875058	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	10875058	10875058	G	A	SNP	GCM2	ENST00000379491	human	ensembl	74_37	-1	known	missense	c.691	p.P231S	0.789	NULL	pfam_Tscrpt_reg_GCM_motif,superfamily_Tscrpt_reg_GCM_motif,pfscan_Tscrpt_reg_GCM_motif	-	no_errors	GCM2	HGNC	ENSG00000124827				86	0	0	93	7	7
FOXO3	0	genome.wustl.edu	37	6	108984700	108984700	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	108984700	108984700	C	T	SNP	FOXO3	ENST00000343882	human	ensembl	74_37	+1	known	missense	c.664	p.R222W	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXO3	HGNC	ENSG00000118689				52	0	0	48	14	22.5806
SYCP2L	0	genome.wustl.edu	37	6	10924769	10924769	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	10924769	10924769	G	A	SNP	SYCP2L	ENST00000283141	human	ensembl	74_37	+1	known	silent	c.1113	p.K371	0.572	NULL	NULL	-	no_errors	SYCP2L	HGNC	ENSG00000153157				58	0	0	56	9	13.8462
SYCP2L	0	genome.wustl.edu	37	6	10924823	10924823	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	10924823	10924823	G	A	SNP	SYCP2L	ENST00000283141	human	ensembl	74_37	+1	known	silent	c.1167	p.L389	0.032	NULL	NULL	-	no_errors	SYCP2L	HGNC	ENSG00000153157				49	0	0	39	8	17.0213
FIG4	0	genome.wustl.edu	37	6	110146311	110146311	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	110146311	110146311	C	T	SNP	FIG4	ENST00000230124	human	ensembl	74_37	+1	known	missense	c.2567	p.S856L	0.997	NULL	pfam_Syja_N,pfscan_Syja_N	-	no_errors	FIG4	HGNC	ENSG00000112367				141	0	0	152	8	5
WASF1	0	genome.wustl.edu	37	6	110421800	110421800	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	110421800	110421800	C	T	SNP	WASF1	ENST00000359451	human	ensembl	74_37	-1	known	silent	c.1605	p.L535	1.000	NULL	pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	WASF1	HGNC	ENSG00000112290				60	0	0	56	14	20
CDC40	0	genome.wustl.edu	37	6	110547422	110547422	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	110547422	110547422	C	T	SNP	CDC40	ENST00000307731	human	ensembl	74_37	+1	known	missense	c.1393	p.P465S	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CDC40	HGNC	ENSG00000168438				83	0	0	89	5	5.31915
SLC22A16	0	genome.wustl.edu	37	6	110746270	110746270	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	110746270	110746270	C	T	SNP	SLC22A16	ENST00000368919	human	ensembl	74_37	-1	known	missense	c.1540	p.A514T	0.402	pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A16	HGNC	ENSG00000004809				94	0	0	71	16	18.3908
NEDD9	0	genome.wustl.edu	37	6	11190445	11190445	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	11190445	11190445	C	T	SNP	NEDD9	ENST00000379446	human	ensembl	74_37	-1	known	missense	c.1657	p.A553T	0.976	pfam_Serine_rich	pfam_CAS_DUF3513,pfam_Serine_rich,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	NEDD9	HGNC	ENSG00000111859				132	0	0	107	6	5.30973
LAMA4	0	genome.wustl.edu	37	6	112460964	112460964	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	112460964	112460964	G	A	SNP	LAMA4	ENST00000230538	human	ensembl	74_37	-1	known	missense	c.3100	p.P1034S	1.000	superfamily_ConA-like_lec_gl_sf,pfscan_Laminin_G	pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_II,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Focal_adhesion_kin_target_dom,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Laminin_G	-	no_errors	LAMA4	HGNC	ENSG00000112769				146	0	0	129	31	19.375
HDAC2	0	genome.wustl.edu	37	6	114266574	114266574	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	114266574	114266574	G	T	SNP	HDAC2	ENST00000398283	human	ensembl	74_37	-1	known	missense	c.1325	p.P442H	1.000	NULL	pfam_His_deacetylse_dom,prints_His_deacetylse_1,prints_His_deacetylse	-	no_errors	HDAC2	HGNC	ENSG00000196591				151	0	0	145	10	6.45161
HS3ST5	0	genome.wustl.edu	37	6	114379185	114379185	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	114379185	114379185	C	T	SNP	HS3ST5	ENST00000312719	human	ensembl	74_37	-1	known	missense	c.277	p.A93T	1.000	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	HS3ST5	HGNC	ENSG00000249853				64	0	0	64	21	24.7059
HS3ST5	0	genome.wustl.edu	37	6	114379236	114379236	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	114379236	114379236	C	T	SNP	HS3ST5	ENST00000312719	human	ensembl	74_37	-1	known	missense	c.226	p.A76T	0.996	superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	HS3ST5	HGNC	ENSG00000249853				46	0	0	42	8	16
TSPYL4	0	genome.wustl.edu	37	6	116574209	116574209	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	116574209	116574209	G	A	SNP	TSPYL4	ENST00000420283	human	ensembl	74_37	-1	known	silent	c.963	p.G321	0.436	pfam_NAP_family	pfam_NAP_family	-	no_errors	TSPYL4	HGNC	ENSG00000187189				61	0	0	61	8	11.5942
SLC35F1	0	genome.wustl.edu	37	6	118475668	118475668	+	Silent	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	118475668	118475668	C	A	SNP	SLC35F1	ENST00000360388	human	ensembl	74_37	+1	known	silent	c.234	p.G78	1.000	pfam_SLC35_F1/F2/F6	pfam_SLC35_F1/F2/F6,pfam_DMT	-	no_errors	SLC35F1	HGNC	ENSG00000196376				171	0	0	162	37	18.593
CEP85L	0	genome.wustl.edu	37	6	118790423	118790423	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	118790423	118790423	C	T	SNP	CEP85L	ENST00000368488	human	ensembl	74_37	-1	known	missense	c.2075	p.G692D	0.017	NULL	NULL	-	no_errors	CEP85L	HGNC	ENSG00000111860				156	0	0	149	22	12.8655
CEP85L	0	genome.wustl.edu	37	6	118801652	118801652	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	118801652	118801652	G	A	SNP	CEP85L	ENST00000368488	human	ensembl	74_37	-1	known	silent	c.1779	p.C593	0.992	NULL	NULL	-	no_errors	CEP85L	HGNC	ENSG00000111860				120	0	0	112	15	11.811
MCM9	0	genome.wustl.edu	37	6	119238739	119238739	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	119238739	119238739	G	A	SNP	MCM9	ENST00000316316	human	ensembl	74_37	-1	known	silent	c.891	p.S297	0.212	smart_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,superfamily_NA-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,smart_AAA+_ATPase,prints_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase	-	no_errors	MCM9	HGNC	ENSG00000111877				119	0	0	90	19	17.4312
GJA1	0	genome.wustl.edu	37	6	121768421	121768421	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	121768421	121768421	G	A	SNP	GJA1	ENST00000282561	human	ensembl	74_37	+1	known	missense	c.428	p.G143D	1.000	NULL	pfam_Connexin_N,pfam_Connexin_CCC,pfam_Connexin43_C,smart_Connexin_N,prints_Connexin,prints_Connexin43	-	no_errors	GJA1	HGNC	ENSG00000152661				151	0	0	137	10	6.80272
EDN1	0	genome.wustl.edu	37	6	12296243	12296243	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	12296243	12296243	G	T	SNP	EDN1	ENST00000379375	human	ensembl	74_37	+1	known	missense	c.582	p.K194N	0.979	NULL	pfam_Endothln-like_toxin,smart_Endothln-like_toxin,prints_Bibrotoxin/Sarafotoxin-D	-	no_errors	EDN1	HGNC	ENSG00000078401				219	0	0	151	30	16.5746
FABP7	0	genome.wustl.edu	37	6	123104893	123104893	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	123104893	123104893	G	A	SNP	FABP7	ENST00000368444	human	ensembl	74_37	+1	known	missense	c.380	p.R127H	1.000	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	-	no_errors	FABP7	HGNC	ENSG00000164434				95	0	0	80	5	5.88235
RNF217	0	genome.wustl.edu	37	6	125379190	125379190	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	125379190	125379190	C	T	SNP	RNF217	ENST00000560949	human	ensembl	74_37	+1	known	missense	c.514	p.R172C	1.000	smart_Znf_C6HC	pfam_Znf_C6HC,smart_Znf_C6HC	-	no_errors	RNF217	HGNC	ENSG00000146373				65	0	0	62	11	15.0685
TPD52L1	0	genome.wustl.edu	37	6	125550412	125550412	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	125550412	125550412	C	T	SNP	TPD52L1	ENST00000534000	human	ensembl	74_37	+1	known	missense	c.284	p.A95V	1.000	pfam_TPD52	pfam_TPD52	-	no_errors	TPD52L1	HGNC	ENSG00000111907				104	0	0	82	9	9.89011
KIAA0408	0	genome.wustl.edu	37	6	127767937	127767937	+	Silent	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	127767937	127767937	A	G	SNP	KIAA0408	ENST00000483725	human	ensembl	74_37	-1	novel	silent	c.1527	p.P509	0.000	NULL	NULL	-	no_errors	KIAA0408	HGNC	ENSG00000189367				53	0	0	67	9	11.8421
SOGA3	0	genome.wustl.edu	37	6	127796499	127796499	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	127796499	127796499	C	T	SNP	SOGA3	ENST00000368268	human	ensembl	74_37	-1	known	missense	c.2672	p.R891H	1.000	NULL	pfam_SOGA	-	no_errors	SOGA3	HGNC	ENSG00000214338				53	0	0	34	8	19.0476
SOGA3	0	genome.wustl.edu	37	6	127796980	127796980	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	127796980	127796980	A	G	SNP	SOGA3	ENST00000368268	human	ensembl	74_37	-1	known	missense	c.2191	p.S731P	1.000	NULL	pfam_SOGA	-	no_errors	SOGA3	HGNC	ENSG00000214338				45	0	0	47	9	16.0714
SOGA3	0	genome.wustl.edu	37	6	127797299	127797299	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	127797299	127797299	G	A	SNP	SOGA3	ENST00000368268	human	ensembl	74_37	-1	known	silent	c.1872	p.G624	0.985	NULL	pfam_SOGA	-	no_errors	SOGA3	HGNC	ENSG00000214338				116	0	0	89	42	32.0611
C6orf58	0	genome.wustl.edu	37	6	127911356	127911356	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	127911356	127911356	C	T	SNP	C6orf58	ENST00000329722	human	ensembl	74_37	+1	known	missense	c.799	p.P267S	0.820	pfam_DUF781	pfam_DUF781	-	no_errors	C6orf58	HGNC	ENSG00000184530				164	0	0	150	45	23.0769
THEMIS	0	genome.wustl.edu	37	6	128134766	128134766	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	128134766	128134766	G	A	SNP	THEMIS	ENST00000543064	human	ensembl	74_37	-1	known	silent	c.1020	p.G340	0.998	NULL	NULL	-	no_errors	THEMIS	HGNC	ENSG00000172673				104	0	0	97	14	12.6126
PHACTR1	0	genome.wustl.edu	37	6	12933967	12933967	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	12933967	12933967	G	A	SNP	PHACTR1	ENST00000379348	human	ensembl	74_37	+1	known	missense	c.353	p.G118D	0.000	NULL	NULL	-	no_errors	PHACTR1	HGNC	ENSG00000112137				106	0	0	99	8	7.47664
LAMA2	0	genome.wustl.edu	37	6	129465081	129465081	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	129465081	129465081	C	T	SNP	LAMA2	ENST00000421865	human	ensembl	74_37	+1	known	silent	c.675	p.A225	0.990	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_B_type_IV,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA2	HGNC	ENSG00000196569				71	0	0	73	18	19.7802
L3MBTL3	0	genome.wustl.edu	37	6	130372535	130372535	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	130372535	130372535	C	A	SNP	L3MBTL3	ENST00000361794	human	ensembl	74_37	+1	known	missense	c.431	p.A144D	0.998	NULL	pfam_Mbt,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt,pfscan_SAM	-	no_errors	L3MBTL3	HGNC	ENSG00000198945				127	0	0	130	7	5.10949
SAMD3	0	genome.wustl.edu	37	6	130465849	130465849	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	130465849	130465849	T	C	SNP	SAMD3	ENST00000368134	human	ensembl	74_37	-1	known	missense	c.1379	p.D460G	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD3	HGNC	ENSG00000164483				69	0	0	78	21	21.2121
TAAR6	0	genome.wustl.edu	37	6	132891588	132891588	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	132891588	132891588	C	T	SNP	TAAR6	ENST00000275198	human	ensembl	74_37	+1	known	missense	c.128	p.A43V	0.029	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_TAAR_fam	-	no_errors	TAAR6	HGNC	ENSG00000146383				109	0	0	83	19	18.6275
TAAR5	0	genome.wustl.edu	37	6	132910431	132910431	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	132910431	132910431	C	T	SNP	TAAR5	ENST00000258034	human	ensembl	74_37	-1	known	missense	c.395	p.R132H	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_TAAR_fam	-	no_errors	TAAR5	HGNC	ENSG00000135569				93	0	0	71	16	18.3908
TAAR5	0	genome.wustl.edu	37	6	132910625	132910625	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	132910625	132910625	C	T	SNP	TAAR5	ENST00000258034	human	ensembl	74_37	-1	known	silent	c.201	p.T67	0.046	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_TAAR_fam	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_TAAR_fam	-	no_errors	TAAR5	HGNC	ENSG00000135569				132	1	0.75188	98	26	20.9677
TBC1D7	0	genome.wustl.edu	37	6	13307631	13307631	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	13307631	13307631	G	A	SNP	TBC1D7	ENST00000607532	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TBC1D7	HGNC	ENSG00000145979				24	0	0	17	5	22.7273
EYA4	0	genome.wustl.edu	37	6	133789774	133789774	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	133789774	133789774	C	T	SNP	EYA4	ENST00000355167	human	ensembl	74_37	+1	known	missense	c.875	p.A292V	0.998	NULL	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_EYA	-	no_errors	EYA4	HGNC	ENSG00000112319				111	0	0	88	23	20.7207
SLC2A12	0	genome.wustl.edu	37	6	134350436	134350436	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	134350436	134350436	A	G	SNP	SLC2A12	ENST00000275230	human	ensembl	74_37	-1	known	missense	c.527	p.V176A	0.998	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt	-	no_errors	SLC2A12	HGNC	ENSG00000146411				112	1	0.884956	88	13	12.8713
RANBP9	0	genome.wustl.edu	37	6	13638133	13638133	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	13638133	13638133	C	T	SNP	RANBP9	ENST00000011619	human	ensembl	74_37	-1	known	missense	c.1580	p.C527Y	1.000	NULL	pfam_SPRY_rcpt,pfam_CTLH/CRA,pfam_LisH_dimerisation_subgr,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,smart_LisH_dimerisation,smart_CTLH_C,smart_CRA_dom,pfscan_B30.2/SPRY,pfscan_LisH_dimerisation,pfscan_CTLH_C	-	no_errors	RANBP9	HGNC	ENSG00000010017				82	0	0	79	14	15.0538
BCLAF1	0	genome.wustl.edu	37	6	136597397	136597397	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	136597397	136597397	A	T	SNP	BCLAF1	ENST00000531224	human	ensembl	74_37	-1	known	missense	c.1266	p.S422R	1.000	NULL	NULL	-	no_errors	BCLAF1	HGNC	ENSG00000029363				288	0	0	262	35	11.7845
PEX7	0	genome.wustl.edu	37	6	137187847	137187847	+	Silent	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	137187847	137187847	T	C	SNP	PEX7	ENST00000318471	human	ensembl	74_37	+1	known	silent	c.609	p.S203	0.805	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PEX7	HGNC	ENSG00000112357				56	0	0	55	4	6.77966
KIAA1244	0	genome.wustl.edu	37	6	138655785	138655785	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	138655785	138655785	C	T	SNP	KIAA1244	ENST00000251691	human	ensembl	74_37	+1	known	silent	c.5802	p.G1934	0.896	NULL	pfam_DUF1981_Sec7_assoc,superfamily_ARM-type_fold,superfamily_Sec7_dom,smart_Sec7_dom	-	no_errors	KIAA1244	HGNC	ENSG00000112379				41	0	0	48	7	12.7273
REPS1	0	genome.wustl.edu	37	6	139234053	139234053	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	139234053	139234053	G	A	SNP	REPS1	ENST00000450536	human	ensembl	74_37	-1	known	missense	c.1820	p.A607V	0.988	NULL	smart_EPS15_homology,pfscan_EF_hand_dom,pfscan_EPS15_homology	-	no_errors	REPS1	HGNC	ENSG00000135597				52	0	0	35	8	18.6047
HECA	0	genome.wustl.edu	37	6	139495646	139495646	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	139495646	139495646	C	T	SNP	HECA	ENST00000367658	human	ensembl	74_37	+1	known	silent	c.1437	p.Y479	0.979	NULL	superfamily_Glycoside_hydrolase_SF	-	no_errors	HECA	HGNC	ENSG00000112406				83	0	0	62	14	18.4211
TXLNB	0	genome.wustl.edu	37	6	139563913	139563913	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	139563913	139563913	G	A	SNP	TXLNB	ENST00000358430	human	ensembl	74_37	-1	known	missense	c.1805	p.A602V	0.001	NULL	pfam_Taxilin_fam	-	no_errors	TXLNB	HGNC	ENSG00000164440				74	0	0	64	11	14.6667
TXLNB	0	genome.wustl.edu	37	6	139564112	139564112	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	139564112	139564112	C	T	SNP	TXLNB	ENST00000358430	human	ensembl	74_37	-1	known	missense	c.1606	p.A536T	0.000	NULL	pfam_Taxilin_fam	-	no_errors	TXLNB	HGNC	ENSG00000164440				119	0	0	96	7	6.79612
VTA1	0	genome.wustl.edu	37	6	142539749	142539749	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	142539749	142539749	C	T	SNP	VTA1	ENST00000367630	human	ensembl	74_37	+1	known	missense	c.893	p.A298V	1.000	NULL	NULL	-	no_errors	VTA1	HGNC	ENSG00000009844				139	0	0	88	6	6.38298
GPR126	0	genome.wustl.edu	37	6	142758632	142758632	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	142758632	142758632	G	A	SNP	GPR126	ENST00000367609	human	ensembl	74_37	+1	known	silent	c.3381	p.Q1127	0.280	NULL	pfam_GPCR_2_secretin-like,pfam_CUB_dom,pfam_GPS_dom,pfam_Pentaxin,superfamily_CUB_dom,superfamily_ConA-like_lec_gl_sf,smart_CUB_dom,smart_Pentaxin,smart_GPS_dom,pfscan_CUB_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR126	HGNC	ENSG00000112414				80	0	0	75	5	6.25
HIVEP2	0	genome.wustl.edu	37	6	143092794	143092794	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	143092794	143092794	G	A	SNP	HIVEP2	ENST00000012134	human	ensembl	74_37	-1	known	nonsense	c.3082	p.R1028*	1.000	NULL	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP2	HGNC	ENSG00000010818				80	0	0	81	9	10
AIG1	0	genome.wustl.edu	37	6	143382137	143382137	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	143382137	143382137	G	T	SNP	AIG1	ENST00000275235	human	ensembl	74_37	+1	known	missense	c.75	p.K25N	1.000	pfam_Far-17a_AIG1	pfam_Far-17a_AIG1	-	no_errors	AIG1	HGNC	ENSG00000146416				77	0	0	65	22	25.2874
UTRN	0	genome.wustl.edu	37	6	144613000	144613000	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	144613000	144613000	C	T	SNP	UTRN	ENST00000367545	human	ensembl	74_37	+1	known	silent	c.36	p.D12	0.199	pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	UTRN	HGNC	ENSG00000152818				78	0	0	79	8	9.1954
EPM2A	0	genome.wustl.edu	37	6	145948764	145948764	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	145948764	145948764	C	T	SNP	EPM2A	ENST00000367519	human	ensembl	74_37	-1	known	missense	c.784	p.V262M	1.000	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,pfam_CBM_fam20,superfamily_Carb-bd-like_fold,smart_Dual-sp_phosphatase_subgr_cat,pfscan_CBM_fam20,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	EPM2A	HGNC	ENSG00000112425				32	0	0	31	6	16.2162
GRM1	0	genome.wustl.edu	37	6	146350908	146350908	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	146350908	146350908	G	A	SNP	GRM1	ENST00000282753	human	ensembl	74_37	+1	known	silent	c.255	p.T85	0.243	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_GPCR_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Metabotropic_Glu_rcpt_Homer-bd,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3_mtglu_rcpt_1,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_5	-	no_errors	GRM1	HGNC	ENSG00000152822				34	0	0	27	3	10
GRM1	0	genome.wustl.edu	37	6	146720226	146720226	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	146720226	146720226	G	A	SNP	GRM1	ENST00000282753	human	ensembl	74_37	+1	known	missense	c.2051	p.R684H	1.000	pfam_GPCR_3_C,pfscan_GPCR_3_C,prints_GPCR_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Metabotropic_Glu_rcpt_Homer-bd,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3_mtglu_rcpt_1,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_5	-	no_errors	GRM1	HGNC	ENSG00000152822				198	0	0	144	32	18.1818
GRM1	0	genome.wustl.edu	37	6	146720492	146720492	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	146720492	146720492	A	G	SNP	GRM1	ENST00000282753	human	ensembl	74_37	+1	known	missense	c.2317	p.K773E	1.000	pfam_GPCR_3_C,pfscan_GPCR_3_C,prints_GPCR_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Metabotropic_Glu_rcpt_Homer-bd,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3_mtglu_rcpt_1,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_5	-	no_errors	GRM1	HGNC	ENSG00000152822				112	0	0	92	21	18.5841
SASH1	0	genome.wustl.edu	37	6	148808836	148808836	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	148808836	148808836	C	T	SNP	SASH1	ENST00000367467	human	ensembl	74_37	+1	known	silent	c.714	p.G238	0.992	NULL	pfam_rSAM/SH3_domain-containing,pfam_SAM_2,pfam_SAM_type1,pfam_SH3_2,superfamily_SAM/pointed,superfamily_SH3_domain,smart_SH3_domain,smart_SAM,pfscan_SAM	-	no_errors	SASH1	HGNC	ENSG00000111961				47	0	0	47	15	24.1935
SASH1	0	genome.wustl.edu	37	6	148869651	148869651	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	148869651	148869651	C	T	SNP	SASH1	ENST00000367467	human	ensembl	74_37	+1	known	missense	c.3701	p.A1234V	1.000	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_rSAM/SH3_domain-containing,pfam_SAM_2,pfam_SAM_type1,pfam_SH3_2,superfamily_SAM/pointed,superfamily_SH3_domain,smart_SH3_domain,smart_SAM,pfscan_SAM	-	no_errors	SASH1	HGNC	ENSG00000111961				68	0	0	63	9	12.5
PCMT1	0	genome.wustl.edu	37	6	150111190	150111190	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	150111190	150111190	G	A	SNP	PCMT1	ENST00000367384	human	ensembl	74_37	+1	known	missense	c.467	p.R156H	1.000	pfam_PCMT,tigrfam_PCMT	pfam_PCMT,tigrfam_PCMT	-	no_errors	PCMT1	HGNC	ENSG00000120265				81	0	0	90	9	9.09091
LRP11	0	genome.wustl.edu	37	6	150174287	150174287	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	150174287	150174287	G	A	SNP	LRP11	ENST00000239367	human	ensembl	74_37	-1	known	missense	c.623	p.A208V	1.000	superfamily_PKD_dom	pfam_MANSC_N,pfam_LDrepeatLR_classA_rpt,superfamily_PKD_dom,superfamily_LDrepeatLR_classA_rpt,smart_MANSC_N,smart_PKD/Chitinase_dom,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_MANSC,pfscan_PKD_dom	-	no_errors	LRP11	HGNC	ENSG00000120256				58	0	0	46	8	14.8148
RAET1E	0	genome.wustl.edu	37	6	150212003	150212003	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	150212003	150212003	C	T	SNP	RAET1E	ENST00000357183	human	ensembl	74_37	-1	known	missense	c.35	p.R12H	0.000	NULL	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	-	no_errors	RAET1E	HGNC	ENSG00000164520				78	0	0	59	20	25.3165
RAET1L	0	genome.wustl.edu	37	6	150342136	150342136	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	150342136	150342136	G	A	SNP	RAET1L	ENST00000286380	human	ensembl	74_37	-1	known	missense	c.536	p.A179V	0.000	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	-	no_errors	RAET1L	HGNC	ENSG00000155918				162	0	0	152	30	16.4835
PLEKHG1	0	genome.wustl.edu	37	6	151054969	151054969	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	151054969	151054969	C	T	SNP	PLEKHG1	ENST00000358517	human	ensembl	74_37	+1	known	missense	c.152	p.A51V	1.000	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG1	HGNC	ENSG00000120278				75	0	0	58	6	9.375
PLEKHG1	0	genome.wustl.edu	37	6	151130348	151130348	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	151130348	151130348	G	A	SNP	PLEKHG1	ENST00000358517	human	ensembl	74_37	+1	known	silent	c.1020	p.T340	0.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG1	HGNC	ENSG00000120278				92	0	0	74	21	22.1053
PLEKHG1	0	genome.wustl.edu	37	6	151152440	151152440	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	151152440	151152440	G	A	SNP	PLEKHG1	ENST00000358517	human	ensembl	74_37	+1	known	silent	c.2193	p.T731	0.000	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG1	HGNC	ENSG00000120278				55	0	0	53	5	8.62069
AKAP12	0	genome.wustl.edu	37	6	151671215	151671215	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	151671215	151671215	C	T	SNP	AKAP12	ENST00000253332	human	ensembl	74_37	+1	known	silent	c.1689	p.G563	0.033	NULL	pfam_Pkinase-A_anch_WSK-motif,pfam_RII_binding_1	-	no_errors	AKAP12	HGNC	ENSG00000131016				47	0	0	38	14	26.9231
ZBTB2	0	genome.wustl.edu	37	6	151687601	151687601	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	151687601	151687601	G	A	SNP	ZBTB2	ENST00000325144	human	ensembl	74_37	-1	known	silent	c.600	p.T200	0.999	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB2	HGNC	ENSG00000181472				67	0	0	53	4	7.01754
ESR1	0	genome.wustl.edu	37	6	152201884	152201884	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	152201884	152201884	C	T	SNP	ESR1	ENST00000206249	human	ensembl	74_37	+1	known	silent	c.738	p.Y246	0.664	pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	pfam_Oestr_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Oestr_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	ESR1	HGNC	ENSG00000091831				58	0	0	46	6	11.5385
SYNE1	0	genome.wustl.edu	37	6	152631593	152631593	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	152631593	152631593	C	T	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	missense	c.16957	p.A5653T	0.996	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				69	0	0	73	6	7.59494
SYNE1	0	genome.wustl.edu	37	6	152631641	152631641	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	152631641	152631641	A	T	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	missense	c.16909	p.F5637I	1.000	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				67	0	0	50	13	20.6349
SYNE1	0	genome.wustl.edu	37	6	152631934	152631934	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	152631934	152631934	G	A	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	silent	c.16785	p.S5595	0.016	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				41	0	0	31	8	20.5128
SYNE1	0	genome.wustl.edu	37	6	152746516	152746516	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	152746516	152746516	C	T	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	missense	c.5267	p.R1756K	1.000	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				107	0	0	108	7	6.08696
SYNE1	0	genome.wustl.edu	37	6	152841620	152841620	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	152841620	152841620	C	T	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	missense	c.283	p.A95T	0.999	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				265	1	0.37594	197	43	17.9167
IPCEF1	0	genome.wustl.edu	37	6	154481030	154481030	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	154481030	154481030	T	C	SNP	IPCEF1	ENST00000367220	human	ensembl	74_37	-1	known	missense	c.1250	p.D417G	0.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	IPCEF1	HGNC	ENSG00000074706				31	0	0	22	10	31.25
IPCEF1	0	genome.wustl.edu	37	6	154481146	154481146	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	154481146	154481146	G	A	SNP	IPCEF1	ENST00000367220	human	ensembl	74_37	-1	known	silent	c.1134	p.N378	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	IPCEF1	HGNC	ENSG00000074706				58	0	0	36	12	25
TIAM2	0	genome.wustl.edu	37	6	155469392	155469392	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	155469392	155469392	G	A	SNP	TIAM2	ENST00000456144	human	ensembl	74_37	+1	known	missense	c.1952	p.S651N	1.000	superfamily_HR1_rho-bd	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,superfamily_HR1_rho-bd,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM2	HGNC	ENSG00000146426				61	0	0	68	17	20
TIAM2	0	genome.wustl.edu	37	6	155532392	155532392	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	155532392	155532392	G	T	SNP	TIAM2	ENST00000456144	human	ensembl	74_37	+1	known	missense	c.3119	p.G1040V	0.999	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,superfamily_HR1_rho-bd,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM2	HGNC	ENSG00000146426				57	0	0	55	7	11.2903
TIAM2	0	genome.wustl.edu	37	6	155561791	155561791	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	155561791	155561791	G	A	SNP	TIAM2	ENST00000456144	human	ensembl	74_37	+1	known	missense	c.3296	p.R1099H	1.000	superfamily_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,superfamily_HR1_rho-bd,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM2	HGNC	ENSG00000146426				62	0	0	51	10	16.3934
TIAM2	0	genome.wustl.edu	37	6	155577914	155577914	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	155577914	155577914	G	A	SNP	TIAM2	ENST00000456144	human	ensembl	74_37	+1	known	missense	c.4852	p.E1618K	1.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,superfamily_HR1_rho-bd,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM2	HGNC	ENSG00000146426				70	0	0	61	6	8.95522
CLDN20	0	genome.wustl.edu	37	6	155596935	155596935	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	155596935	155596935	C	T	SNP	CLDN20	ENST00000367165	human	ensembl	74_37	+1	known	missense	c.82	p.P28S	1.000	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin	-	no_errors	CLDN20	HGNC	ENSG00000171217				109	0	0	94	27	22.314
NOX3	0	genome.wustl.edu	37	6	155743924	155743924	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	155743924	155743924	G	A	SNP	NOX3	ENST00000159060	human	ensembl	74_37	-1	known	silent	c.1212	p.C404	0.999	pfam_Fe_red_NAD-bd_6,prints_Cyt_b245_heavy_chain	pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl,prints_Cyt_b245_heavy_chain	-	no_errors	NOX3	HGNC	ENSG00000074771				120	0	0	138	26	15.8537
NOX3	0	genome.wustl.edu	37	6	155761236	155761236	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	155761236	155761236	G	A	SNP	NOX3	ENST00000159060	human	ensembl	74_37	-1	known	silent	c.522	p.G174	0.002	pfam_Fe3_Rdtase_TM_dom	pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl,prints_Cyt_b245_heavy_chain	-	no_errors	NOX3	HGNC	ENSG00000074771				82	0	0	69	16	18.8235
DTNBP1	0	genome.wustl.edu	37	6	15627674	15627674	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	15627674	15627674	C	T	SNP	DTNBP1	ENST00000355917	human	ensembl	74_37	-1	known	silent	c.255	p.A85	0.199	superfamily_Trp_syn_b_sub_like_PLP_eny_SF	pfam_Dysbindin,superfamily_Trp_syn_b_sub_like_PLP_eny_SF	-	no_errors	DTNBP1	HGNC	ENSG00000047579				52	0	0	47	8	14.5455
ARID1B	0	genome.wustl.edu	37	6	157488293	157488293	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	157488293	157488293	C	T	SNP	ARID1B	ENST00000367148	human	ensembl	74_37	+1	known	missense	c.2960	p.A987V	0.088	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1B	HGNC	ENSG00000049618				72	0	0	60	18	23.0769
SYNJ2	0	genome.wustl.edu	37	6	158517270	158517270	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	158517270	158517270	C	T	SNP	SYNJ2	ENST00000355585	human	ensembl	74_37	+1	known	silent	c.4365	p.G1455	0.000	NULL	pfam_Syja_N,pfam_DUF1866,pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc,pfscan_RRM_dom,pfscan_Syja_N	-	no_errors	SYNJ2	HGNC	ENSG00000078269				53	0	0	48	10	17.2414
TULP4	0	genome.wustl.edu	37	6	158923299	158923299	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	158923299	158923299	C	T	SNP	TULP4	ENST00000367097	human	ensembl	74_37	+1	known	silent	c.2604	p.G868	1.000	NULL	pfam_Tubby_C,pfam_SOCS_C,pfam_WD40_repeat,superfamily_Tubby_C-like,superfamily_WD40_repeat_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_WD40_repeat,smart_SOCS_C,pfscan_SOCS_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TULP4	HGNC	ENSG00000130338				56	0	0	35	14	28.5714
IGF2R	0	genome.wustl.edu	37	6	160468277	160468277	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	160468277	160468277	C	T	SNP	IGF2R	ENST00000356956	human	ensembl	74_37	+1	known	missense	c.2138	p.T713I	0.001	pfam_CIMR,superfamily_Man6P_isomerase_rcpt-bd_dom	pfam_CIMR,pfam_FN_type2_col-bd,superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Kringle-like,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	-	no_errors	IGF2R	HGNC	ENSG00000197081				122	0	0	94	10	9.61538
IGF2R	0	genome.wustl.edu	37	6	160497000	160497000	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	160497000	160497000	C	T	SNP	IGF2R	ENST00000356956	human	ensembl	74_37	+1	known	missense	c.5288	p.A1763V	0.000	pfam_CIMR,superfamily_Man6P_isomerase_rcpt-bd_dom	pfam_CIMR,pfam_FN_type2_col-bd,superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Kringle-like,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	-	no_errors	IGF2R	HGNC	ENSG00000197081				119	0	0	132	18	12
IGF2R	0	genome.wustl.edu	37	6	160523629	160523629	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	160523629	160523629	C	T	SNP	IGF2R	ENST00000356956	human	ensembl	74_37	+1	known	silent	c.6921	p.G2307	0.696	NULL	pfam_CIMR,pfam_FN_type2_col-bd,superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Kringle-like,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	-	no_errors	IGF2R	HGNC	ENSG00000197081				22	0	0	19	4	17.3913
LPA	0	genome.wustl.edu	37	6	160977182	160977182	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	160977182	160977182	G	T	SNP	LPA	ENST00000316300	human	ensembl	74_37	-1	known	nonsense	c.4848	p.C1616*	1.000	pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pfscan_Kringle	pfam_Kringle,pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_Kringle,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Kringle,pfscan_Peptidase_S1	-	no_errors	LPA	HGNC	ENSG00000198670				177	0	0	109	17	13.4921
LPA	0	genome.wustl.edu	37	6	161006078	161006078	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	161006078	161006078	G	A	SNP	LPA	ENST00000316300	human	ensembl	74_37	-1	known	missense	c.4289	p.A1430V	0.946	pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pfscan_Kringle	pfam_Kringle,pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_Kringle,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Kringle,pfscan_Peptidase_S1	-	no_errors	LPA	HGNC	ENSG00000198670				191	1	0.520833	178	25	12.3153
LPA	0	genome.wustl.edu	37	6	161020532	161020532	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	161020532	161020532	G	A	SNP	LPA	ENST00000316300	human	ensembl	74_37	-1	known	missense	c.3287	p.A1096V	0.421	pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pfscan_Kringle	pfam_Kringle,pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_Kringle,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Kringle,pfscan_Peptidase_S1	-	no_errors	LPA	HGNC	ENSG00000198670				363	0	0	409	30	6.83371
LPA	0	genome.wustl.edu	37	6	161026078	161026078	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	161026078	161026078	G	A	SNP	LPA	ENST00000316300	human	ensembl	74_37	-1	known	missense	c.2945	p.A982V	0.930	pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pfscan_Kringle	pfam_Kringle,pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_Kringle,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Kringle,pfscan_Peptidase_S1	-	no_errors	LPA	HGNC	ENSG00000198670				374	1	0.266667	329	107	24.5413
PLG	0	genome.wustl.edu	37	6	161152221	161152221	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	161152221	161152221	G	A	SNP	PLG	ENST00000308192	human	ensembl	74_37	+1	known	silent	c.1395	p.P465	0.000	pirsf_Pept_S1A_plasmin,superfamily_Kringle-like	pirsf_Pept_S1A_plasmin,pfam_Kringle,pfam_Peptidase_S1,pfam_PAN-1_domain,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1	-	no_errors	PLG	HGNC	ENSG00000122194				104	0	0	85	28	24.7788
MYLIP	0	genome.wustl.edu	37	6	16143955	16143955	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	16143955	16143955	G	A	SNP	MYLIP	ENST00000356840	human	ensembl	74_37	+1	known	missense	c.688	p.A230T	1.000	pfscan_FERM_domain	pfam_FERM_N,pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,pfscan_Znf_RING,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	MYLIP	HGNC	ENSG00000007944				96	0	0	98	6	5.76923
MAP3K4	0	genome.wustl.edu	37	6	161508846	161508846	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	161508846	161508846	G	A	SNP	MAP3K4	ENST00000392142	human	ensembl	74_37	+1	known	missense	c.2683	p.V895I	0.012	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K4	HGNC	ENSG00000085511				122	0	0	73	22	23.1579
MAP3K4	0	genome.wustl.edu	37	6	161523018	161523018	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	161523018	161523018	C	T	SNP	MAP3K4	ENST00000392142	human	ensembl	74_37	+1	known	nonsense	c.3769	p.R1257*	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K4	HGNC	ENSG00000085511				52	0	0	54	11	16.9231
MAP3K4	0	genome.wustl.edu	37	6	161533750	161533750	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	161533750	161533750	C	T	SNP	MAP3K4	ENST00000392142	human	ensembl	74_37	+1	known	missense	c.4570	p.R1524C	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K4	HGNC	ENSG00000085511				76	0	0	68	13	16.0494
AGPAT4	0	genome.wustl.edu	37	6	161574408	161574408	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	161574408	161574408	C	T	SNP	AGPAT4	ENST00000320285	human	ensembl	74_37	-1	known	missense	c.634	p.A212T	0.951	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase	-	no_errors	AGPAT4	HGNC	ENSG00000026652				11	0	0	12	5	29.4118
QKI	0	genome.wustl.edu	37	6	163984542	163984542	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	163984542	163984542	G	A	SNP	QKI	ENST00000361752	human	ensembl	74_37	+1	known	missense	c.725	p.R242H	0.996	NULL	pfam_KH_dom_type_1,smart_KH_dom	-	no_errors	QKI	HGNC	ENSG00000112531				63	0	0	56	12	17.6471
C6orf118	0	genome.wustl.edu	37	6	165715311	165715311	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	165715311	165715311	C	T	SNP	C6orf118	ENST00000230301	human	ensembl	74_37	-1	known	missense	c.500	p.G167D	0.000	superfamily_Ribonuclease/ribotoxin	superfamily_Ribonuclease/ribotoxin	-	no_errors	C6orf118	HGNC	ENSG00000112539				48	0	0	40	5	11.1111
FGFR1OP	0	genome.wustl.edu	37	6	167436102	167436102	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	167436102	167436102	A	G	SNP	FGFR1OP	ENST00000366847	human	ensembl	74_37	+1	known	missense	c.785	p.K262R	0.964	NULL	pfam_FOP_dimerisation-dom_N,pfscan_LisH_dimerisation	-	no_errors	FGFR1OP	HGNC	ENSG00000213066				78	0	0	66	19	22.3529
UNC93A	0	genome.wustl.edu	37	6	167728837	167728837	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	167728837	167728837	C	T	SNP	UNC93A	ENST00000230256	human	ensembl	74_37	+1	known	missense	c.1271	p.A424V	0.006	superfamily_MFS_dom_general_subst_transpt	pfam_Ion_channel_UNC-93,superfamily_MFS_dom_general_subst_transpt	-	no_errors	UNC93A	HGNC	ENSG00000112494				312	0	0	271	44	13.9683
MLLT4	0	genome.wustl.edu	37	6	168281118	168281118	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	168281118	168281118	C	A	SNP	MLLT4	ENST00000366806	human	ensembl	74_37	+1	known	missense	c.818	p.P273H	0.994	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc	pfam_Ras-assoc,pfam_Dil_domain,pfam_PDZ,pfam_FHA_dom,superfamily_PDZ,superfamily_SMAD_FHA_domain,smart_Ras-assoc,smart_FHA_dom,smart_PDZ,pfscan_Dilute,pfscan_PDZ,pfscan_Ras-assoc	-	no_errors	MLLT4	HGNC	ENSG00000130396				233	0	0	188	59	23.8866
MLLT4	0	genome.wustl.edu	37	6	168312071	168312071	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	168312071	168312071	T	C	SNP	MLLT4	ENST00000366806	human	ensembl	74_37	+1	known	missense	c.1939	p.S647P	1.000	NULL	pfam_Ras-assoc,pfam_Dil_domain,pfam_PDZ,pfam_FHA_dom,superfamily_PDZ,superfamily_SMAD_FHA_domain,smart_Ras-assoc,smart_FHA_dom,smart_PDZ,pfscan_Dilute,pfscan_PDZ,pfscan_Ras-assoc	-	no_errors	MLLT4	HGNC	ENSG00000130396				121	0	0	97	25	20.4918
MLLT4	0	genome.wustl.edu	37	6	168344088	168344088	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	168344088	168344088	C	T	SNP	MLLT4	ENST00000366806	human	ensembl	74_37	+1	known	missense	c.3151	p.R1051C	0.998	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_Ras-assoc,pfam_Dil_domain,pfam_PDZ,pfam_FHA_dom,superfamily_PDZ,superfamily_SMAD_FHA_domain,smart_Ras-assoc,smart_FHA_dom,smart_PDZ,pfscan_Dilute,pfscan_PDZ,pfscan_Ras-assoc	-	no_errors	MLLT4	HGNC	ENSG00000130396				137	0	0	162	9	5.26316
MLLT4	0	genome.wustl.edu	37	6	168352728	168352728	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	168352728	168352728	G	A	SNP	MLLT4	ENST00000366806	human	ensembl	74_37	+1	known	missense	c.4673	p.R1558H	1.000	NULL	pfam_Ras-assoc,pfam_Dil_domain,pfam_PDZ,pfam_FHA_dom,superfamily_PDZ,superfamily_SMAD_FHA_domain,smart_Ras-assoc,smart_FHA_dom,smart_PDZ,pfscan_Dilute,pfscan_PDZ,pfscan_Ras-assoc	-	no_errors	MLLT4	HGNC	ENSG00000130396				40	0	0	21	10	32.2581
DLL1	0	genome.wustl.edu	37	6	170592454	170592454	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	170592454	170592454	G	A	SNP	DLL1	ENST00000366756	human	ensembl	74_37	-1	known	missense	c.1913	p.A638V	0.002	NULL	pfam_EG-like_dom,pfam_Notch_ligand_N,pfam_DSL,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,smart_DSL,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_DSL,pfscan_EG-like_dom	-	no_errors	DLL1	HGNC	ENSG00000198719				72	0	0	55	13	19.1176
FAM120B	0	genome.wustl.edu	37	6	170627136	170627136	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	170627136	170627136	G	A	SNP	FAM120B	ENST00000537664	human	ensembl	74_37	+1	known	missense	c.727	p.A243T	0.000	NULL	NULL	-	no_errors	FAM120B	HGNC	ENSG00000112584				64	0	0	61	25	29.0698
CAP2	0	genome.wustl.edu	37	6	17421836	17421836	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	17421836	17421836	G	A	SNP	CAP2	ENST00000229922	human	ensembl	74_37	+1	known	missense	c.50	p.R17H	0.993	pfam_Adenylate_cyclase-assoc_CAP_N	pfam_Adenylate_cyclase-assoc_CAP_N,pfam_Adenylate_cyclase-assoc_CAP_C,superfamily_Adenylate_cyclase-assoc_CAP_N,superfamily_Adenylate_cyclase-assoc_CAP_C,smart_CARP_motif	-	no_errors	CAP2	HGNC	ENSG00000112186				92	0	0	84	13	13.4021
CAP2	0	genome.wustl.edu	37	6	17543142	17543142	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	17543142	17543142	C	T	SNP	CAP2	ENST00000229922	human	ensembl	74_37	+1	known	silent	c.1077	p.C359	0.987	pfam_Adenylate_cyclase-assoc_CAP_C,superfamily_Adenylate_cyclase-assoc_CAP_C,smart_CARP_motif	pfam_Adenylate_cyclase-assoc_CAP_N,pfam_Adenylate_cyclase-assoc_CAP_C,superfamily_Adenylate_cyclase-assoc_CAP_N,superfamily_Adenylate_cyclase-assoc_CAP_C,smart_CARP_motif	-	no_errors	CAP2	HGNC	ENSG00000112186				132	0	0	137	9	6.16438
NUP153	0	genome.wustl.edu	37	6	17637996	17637996	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	17637996	17637996	C	T	SNP	NUP153	ENST00000537253	human	ensembl	74_37	-1	known	missense	c.1945	p.A649T	0.001	pfam_Nucleoporin_Nup153	pfam_Nucleoporin_Nup153,pfam_Znf_RanBP2,pfam_Retro-transposon_transp_CS,smart_Znf_RanBP2,pfscan_Znf_RanBP2	-	no_errors	NUP153	HGNC	ENSG00000124789				75	0	0	62	24	27.907
KDM1B	0	genome.wustl.edu	37	6	18200736	18200736	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	18200736	18200736	G	A	SNP	KDM1B	ENST00000388870	human	ensembl	74_37	+1	known	missense	c.1288	p.V430I	0.959	pfam_Amino_oxidase,pfam_FAD-dep_OxRdtase,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD	pfam_Amino_oxidase,pfam_Znf_CW,pfam_FAD-dep_OxRdtase,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_SWIRM,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_mOase_FAD-bd,pfam_CHP00275_HI0933-like,pfam_FAD_bind_dom,superfamily_Homeodomain-like,pfscan_SWIRM,pfscan_Znf_CW	-	no_errors	KDM1B	HGNC	ENSG00000165097				115	0	0	87	13	13
MBOAT1	0	genome.wustl.edu	37	6	20118754	20118754	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	20118754	20118754	C	T	SNP	MBOAT1	ENST00000324607	human	ensembl	74_37	-1	known	missense	c.925	p.A309T	1.000	pfam_MBOAT_fam	pfam_MBOAT_fam	-	no_errors	MBOAT1	HGNC	ENSG00000172197				61	0	0	55	18	24.6575
E2F3	0	genome.wustl.edu	37	6	20481611	20481611	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	20481611	20481611	G	T	SNP	E2F3	ENST00000346618	human	ensembl	74_37	+1	known	missense	c.680	p.G227V	1.000	pfam_E2F_TDP	pfam_E2F_TDP	-	no_errors	E2F3	HGNC	ENSG00000112242				303	0	0	242	67	21.6828
CDKAL1	0	genome.wustl.edu	37	6	20546663	20546663	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	20546663	20546663	C	T	SNP	CDKAL1	ENST00000274695	human	ensembl	74_37	+1	known	missense	c.82	p.H28Y	0.987	NULL	pfam_Methylthiotransferase_N,pfam_rSAM,pfam_TRAM_dom,smart_Elp3/MiaB/NifB,pfscan_TRAM_dom,tigrfam_MiaB-like_B,tigrfam_Methylthiotransferase	-	no_errors	CDKAL1	HGNC	ENSG00000145996				103	0	0	105	13	11.0169
PRL	0	genome.wustl.edu	37	6	22294697	22294697	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	22294697	22294697	G	A	SNP	PRL	ENST00000306482	human	ensembl	74_37	-1	known	missense	c.145	p.R49C	0.961	pfam_Somatotropin,superfamily_4_helix_cytokine-like_core	pfam_Somatotropin,superfamily_4_helix_cytokine-like_core,prints_Somatotropin	-	no_errors	PRL	HGNC	ENSG00000172179				46	0	0	47	4	7.84314
DCDC2	0	genome.wustl.edu	37	6	24205404	24205404	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	24205404	24205404	C	T	SNP	DCDC2	ENST00000378450	human	ensembl	74_37	-1	known	silent	c.108	p.L36	0.000	NULL	NULL	-	no_errors	DCDC2	HGNC	ENSG00000146038				55	0	0	51	4	7.27273
KIAA0319	0	genome.wustl.edu	37	6	24588855	24588855	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	24588855	24588855	C	T	SNP	KIAA0319	ENST00000378214	human	ensembl	74_37	-1	known	silent	c.960	p.E320	0.003	smart_Fibronectin_type3	pfam_PKD/REJ-like,superfamily_PKD_dom,smart_MANSC_N,smart_Fibronectin_type3,smart_PKD/Chitinase_dom,pfscan_MANSC,pfscan_PKD_dom	-	no_errors	KIAA0319	HGNC	ENSG00000137261				100	0	0	93	6	6.06061
C6orf62	0	genome.wustl.edu	37	6	24714622	24714622	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	24714622	24714622	C	T	SNP	C6orf62	ENST00000378119	human	ensembl	74_37	-1	known	missense	c.353	p.R118Q	1.000	NULL	NULL	-	no_errors	C6orf62	HGNC	ENSG00000112308				103	0	0	83	26	23.8532
LRRC16A	0	genome.wustl.edu	37	6	25594745	25594745	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	25594745	25594745	A	G	SNP	LRRC16A	ENST00000329474	human	ensembl	74_37	+1	novel	missense	c.3109	p.M1037V	1.000	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC16A	HGNC	ENSG00000079691				93	0	0	62	5	7.46269
HIST1H1A	0	genome.wustl.edu	37	6	26017792	26017792	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	26017792	26017792	G	A	SNP	HIST1H1A	ENST00000244573	human	ensembl	74_37	-1	known	missense	c.169	p.R57C	1.000	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15,prints_Histone_H5	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15,prints_Histone_H5	-	no_errors	HIST1H1A	HGNC	ENSG00000124610				57	0	0	36	4	10
HFE	0	genome.wustl.edu	37	6	26093362	26093362	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	26093362	26093362	G	A	SNP	HFE	ENST00000357618	human	ensembl	74_37	+1	known	missense	c.908	p.G303D	0.000	NULL	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom,prints_MHC_I_a	-	no_errors	HFE	HGNC	ENSG00000010704				110	0	0	79	11	12.2222
HIST1H1T	0	genome.wustl.edu	37	6	26107824	26107824	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	26107824	26107824	G	A	SNP	HIST1H1T	ENST00000338379	human	ensembl	74_37	-1	known	silent	c.498	p.S166	0.000	NULL	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15,prints_Histone_H5	-	no_errors	HIST1H1T	HGNC	ENSG00000187475				131	0	0	85	29	25.4386
HIST1H1T	0	genome.wustl.edu	37	6	26108074	26108074	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	26108074	26108074	C	T	SNP	HIST1H1T	ENST00000338379	human	ensembl	74_37	-1	known	missense	c.248	p.R83H	1.000	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15,prints_Histone_H5	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15,prints_Histone_H5	-	no_errors	HIST1H1T	HGNC	ENSG00000187475				120	0	0	77	23	23
HIST1H2AC	0	genome.wustl.edu	37	6	26124765	26124765	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	26124765	26124765	C	T	SNP	HIST1H2AC	ENST00000314088	human	ensembl	74_37	+1	known	missense	c.305	p.T102I	1.000	superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AC	HGNC	ENSG00000180573				129	0	0	104	24	18.75
HIST1H3E	0	genome.wustl.edu	37	6	26225715	26225715	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	26225715	26225715	C	T	SNP	HIST1H3E	ENST00000360408	human	ensembl	74_37	+1	known	silent	c.333	p.C111	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST1H3E	HGNC	ENSG00000196966				92	0	0	88	11	11.1111
HIST1H2BH	0	genome.wustl.edu	37	6	26252014	26252014	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	26252014	26252014	C	T	SNP	HIST1H2BH	ENST00000356350	human	ensembl	74_37	+1	known	silent	c.136	p.L46	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BH	HGNC	ENSG00000197459				203	0	0	168	50	22.9358
BTN2A2	0	genome.wustl.edu	37	6	26390250	26390250	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	26390250	26390250	G	A	SNP	BTN2A2	ENST00000356709	human	ensembl	74_37	+1	known	missense	c.742	p.A248T	0.018	NULL	pfam_SPRY_rcpt,pfam_Ig_V-set,pfam_CD80_C2-set,superfamily_ConA-like_lec_gl_sf,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Ig-like_dom	-	no_errors	BTN2A2	HGNC	ENSG00000124508				108	0	0	100	23	18.6992
BTN2A2	0	genome.wustl.edu	37	6	26392964	26392964	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	26392964	26392964	C	T	SNP	BTN2A2	ENST00000356709	human	ensembl	74_37	+1	known	silent	c.1341	p.G447	0.004	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Ig_V-set,pfam_CD80_C2-set,superfamily_ConA-like_lec_gl_sf,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Ig-like_dom	-	no_errors	BTN2A2	HGNC	ENSG00000124508				85	0	0	50	17	25.3731
BTN3A3	0	genome.wustl.edu	37	6	26452025	26452025	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	26452025	26452025	C	T	SNP	BTN3A3	ENST00000244519	human	ensembl	74_37	+1	known	missense	c.1141	p.R381C	0.000	superfamily_ConA-like_lec_gl_sf,smart_PRY,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Ig_V-set,superfamily_ConA-like_lec_gl_sf,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Ig-like_dom,prints_Butyrophylin	-	no_errors	BTN3A3	HGNC	ENSG00000111801				86	0	0	80	21	20.7921
ABT1	0	genome.wustl.edu	37	6	26597319	26597319	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	26597319	26597319	T	C	SNP	ABT1	ENST00000274849	human	ensembl	74_37	+1	known	missense	c.109	p.C37R	0.000	NULL	NULL	-	no_errors	ABT1	HGNC	ENSG00000146109				24	0	0	25	7	21.875
HIST1H2BN	0	genome.wustl.edu	37	6	27806762	27806762	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	27806762	27806762	C	T	SNP	HIST1H2BN	ENST00000396980	human	ensembl	74_37	+1	known	missense	c.323	p.A108V	1.000	superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BN	HGNC	ENSG00000233822				99	0	0	83	5	5.68182
ZSCAN9	0	genome.wustl.edu	37	6	28200861	28200861	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	28200861	28200861	C	T	SNP	ZSCAN9	ENST00000252207	human	ensembl	74_37	+1	known	nonsense	c.1090	p.R364*	0.752	pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN9	HGNC	ENSG00000137185				60	0	0	53	8	13.1148
PGBD1	0	genome.wustl.edu	37	6	28251950	28251950	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	28251950	28251950	G	C	SNP	PGBD1	ENST00000259883	human	ensembl	74_37	+1	known	missense	c.360	p.E120D	0.893	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,pfscan_SRCR,pfscan_Tscrpt_reg_SCAN	-	no_errors	PGBD1	HGNC	ENSG00000137338				126	0	0	93	18	16.2162
LOC101929006	0	genome.wustl.edu	37	6	29231718	29231718	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	29231718	29231718	G	A	SNP	LOC101929006	ENST00000441381	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	XXbac-BPG308J9.3	Clone_based_vega_gene	ENSG00000232505				165	0	0	156	27	14.7541
OR14J1	0	genome.wustl.edu	37	6	29274617	29274617	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	29274617	29274617	C	T	SNP	OR14J1	ENST00000377160	human	ensembl	74_37	+1	known	missense	c.151	p.R51C	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR14J1	HGNC	ENSG00000204695				134	0	0	131	37	22.0238
OR5V1	0	genome.wustl.edu	37	6	29323210	29323210	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	29323210	29323210	C	T	SNP	OR5V1	ENST00000377154	human	ensembl	74_37	-1	known	missense	c.763	p.A255T	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5V1	HGNC	ENSG00000243729				76	0	0	92	7	7.07071
OR10C1	0	genome.wustl.edu	37	6	29408113	29408113	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	29408113	29408113	C	T	SNP	OR10C1	ENST00000444197	human	ensembl	74_37	+1	known	silent	c.321	p.G107	0.002	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR10C1	HGNC	ENSG00000206474				63	0	0	45	12	21.0526
OR2H1	0	genome.wustl.edu	37	6	29430238	29430238	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	29430238	29430238	C	A	SNP	OR2H1	ENST00000377132	human	ensembl	74_37	+1	known	missense	c.692	p.A231E	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2H1	HGNC	ENSG00000204688				130	0	0	149	18	10.7784
MAS1L	0	genome.wustl.edu	37	6	29455184	29455184	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	29455184	29455184	C	T	SNP	MAS1L	ENST00000377127	human	ensembl	74_37	-1	known	missense	c.496	p.A166T	0.791	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	MAS1L	HGNC	ENSG00000204687				69	0	0	53	22	29.3333
MOG	0	genome.wustl.edu	37	6	29638111	29638111	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	29638111	29638111	C	T	SNP	MOG	ENST00000376898	human	ensembl	74_37	+1	known	missense	c.646	p.P216S	0.986	pirsf_Myelin-oligodendrocyte_glycop	pirsf_Myelin-oligodendrocyte_glycop,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	MOG	HGNC	ENSG00000204655				134	1	0.740741	119	7	5.55556
PPP1R10	0	genome.wustl.edu	37	6	30569937	30569937	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	30569937	30569937	C	T	SNP	PPP1R10	ENST00000376511	human	ensembl	74_37	-1	known	missense	c.2489	p.R830H	0.977	NULL	pfam_TFIIS_N,pfam_Znf_CCCH,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,smart_Znf_CCCH	-	no_errors	PPP1R10	HGNC	ENSG00000204569				95	0	0	74	15	16.8539
PPP1R10	0	genome.wustl.edu	37	6	30571953	30571953	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	30571953	30571953	G	A	SNP	PPP1R10	ENST00000376511	human	ensembl	74_37	-1	known	missense	c.1340	p.A447V	1.000	NULL	pfam_TFIIS_N,pfam_Znf_CCCH,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,smart_Znf_CCCH	-	no_errors	PPP1R10	HGNC	ENSG00000204569				64	0	0	82	8	8.88889
DHX16	0	genome.wustl.edu	37	6	30624478	30624478	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	30624478	30624478	C	T	SNP	DHX16	ENST00000376442	human	ensembl	74_37	-1	known	missense	c.2207	p.R736H	1.000	superfamily_P-loop_NTPase,pfscan_Helicase_C	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX16	HGNC	ENSG00000204560				78	0	0	58	9	13.4328
DHX16	0	genome.wustl.edu	37	6	30633376	30633376	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	30633376	30633376	C	T	SNP	DHX16	ENST00000376442	human	ensembl	74_37	-1	known	silent	c.801	p.R267	0.534	NULL	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX16	HGNC	ENSG00000204560				73	0	0	62	13	17.3333
RIPK1	0	genome.wustl.edu	37	6	3083441	3083441	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	3083441	3083441	G	A	SNP	RIPK1	ENST00000259808	human	ensembl	74_37	+1	known	silent	c.582	p.A194	0.868	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Death_domain,superfamily_Kinase-like_dom,superfamily_DEATH-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Death_domain,pfscan_Death_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RIPK1	HGNC	ENSG00000137275				98	0	0	102	8	7.27273
DPCR1	0	genome.wustl.edu	37	6	30918709	30918709	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	30918709	30918709	C	A	SNP	DPCR1	ENST00000462446	human	ensembl	74_37	+1	novel	missense	c.2468	p.T823K	0.000	NULL	NULL	-	no_errors	DPCR1	HGNC	ENSG00000168631				15	0	0	1	3	75
PSORS1C1	0	genome.wustl.edu	37	6	31106442	31106442	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	31106442	31106442	C	T	SNP	PSORS1C1	ENST00000259881	human	ensembl	74_37	+1	known	missense	c.53	p.T18I	0.000	NULL	NULL	-	no_errors	PSORS1C1	HGNC	ENSG00000204540				129	0	0	102	21	17.0732
TUBB2A	0	genome.wustl.edu	37	6	3154871	3154871	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	3154871	3154871	C	T	SNP	TUBB2A	ENST00000333628	human	ensembl	74_37	-1	known	silent	c.564	p.S188	0.003	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Tubulin,prints_Delta_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB2A	HGNC	ENSG00000137267				93	0	0	79	8	9.1954
PRRC2A	0	genome.wustl.edu	37	6	31595695	31595695	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	31595695	31595695	C	T	SNP	PRRC2A	ENST00000376007	human	ensembl	74_37	+1	known	missense	c.1444	p.R482C	1.000	NULL	pfam_BAT2_N	-	no_errors	PRRC2A	HGNC	ENSG00000204469				61	0	0	66	6	8.33333
PRRC2A	0	genome.wustl.edu	37	6	31597080	31597080	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	31597080	31597080	C	T	SNP	PRRC2A	ENST00000376007	human	ensembl	74_37	+1	known	missense	c.1925	p.S642L	0.997	NULL	pfam_BAT2_N	-	no_errors	PRRC2A	HGNC	ENSG00000204469				133	0	0	111	38	25.5034
LY6G6F	0	genome.wustl.edu	37	6	31675769	31675769	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	31675769	31675769	C	T	SNP	LY6G6F	ENST00000556581	human	ensembl	74_37	+1	known	silent	c.504	p.G168	0.023	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	LY6G6F	HGNC	ENSG00000204424				95	0	0	63	6	8.69565
DDAH2	0	genome.wustl.edu	37	6	31695064	31695064	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	31695064	31695064	C	T	SNP	DDAH2	ENST00000375787	human	ensembl	74_37	-1	known	missense	c.808	p.A270T	0.992	pfam_Amidino_trans	pfam_Amidino_trans	-	no_errors	DDAH2	HGNC	ENSG00000213722				84	0	0	60	15	20
DDAH2	0	genome.wustl.edu	37	6	31696672	31696672	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	31696672	31696672	C	T	SNP	DDAH2	ENST00000375787	human	ensembl	74_37	-1	known	silent	c.267	p.T89	0.998	pfam_Amidino_trans	pfam_Amidino_trans	-	no_errors	DDAH2	HGNC	ENSG00000213722				32	0	0	17	4	19.0476
MSH5	0	genome.wustl.edu	37	6	31713064	31713064	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	31713064	31713064	C	T	SNP	MSH5	ENST00000375742	human	ensembl	74_37	+1	known	missense	c.785	p.A262V	1.000	pfam_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_core	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_P-loop_NTPase,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C	-	no_errors	MSH5	HGNC	ENSG00000204410				51	0	0	54	6	10
SLC44A4	0	genome.wustl.edu	37	6	31833122	31833122	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	31833122	31833122	G	A	SNP	SLC44A4	ENST00000229729	human	ensembl	74_37	-1	known	missense	c.1730	p.A577V	1.000	pfam_Choline_transptr-like	pfam_Choline_transptr-like	-	no_errors	SLC44A4	HGNC	ENSG00000204385				171	0	0	124	38	23.4568
ZBTB12	0	genome.wustl.edu	37	6	31868726	31868726	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	31868726	31868726	G	A	SNP	ZBTB12	ENST00000375527	human	ensembl	74_37	-1	known	silent	c.357	p.C119	0.894	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB12	HGNC	ENSG00000204366				57	0	0	62	10	13.8889
DXO	0	genome.wustl.edu	37	6	31938887	31938887	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	31938887	31938887	G	A	SNP	DXO	ENST00000337523	human	ensembl	74_37	-1	known	missense	c.394	p.R132W	1.000	NULL	pfam_RAI1	-	no_errors	DXO	HGNC	ENSG00000204348				41	0	0	25	11	30.5556
TNXB	0	genome.wustl.edu	37	6	32017064	32017064	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	32017064	32017064	G	A	SNP	TNXB	ENST00000375247	human	ensembl	74_37	-1	known	missense	c.9734	p.S3245F	0.989	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477				18	0	0	17	4	19.0476
TNXB	0	genome.wustl.edu	37	6	32020573	32020573	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	32020573	32020573	G	A	SNP	TNXB	ENST00000375247	human	ensembl	74_37	-1	known	missense	c.8983	p.R2995C	0.998	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477				35	0	0	17	8	32
TNXB	0	genome.wustl.edu	37	6	32041456	32041456	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	32041456	32041456	C	T	SNP	TNXB	ENST00000375247	human	ensembl	74_37	-1	known	missense	c.4649	p.R1550H	0.004	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477				31	0	0	22	5	18.5185
TNXB	0	genome.wustl.edu	37	6	32052264	32052264	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	32052264	32052264	C	T	SNP	TNXB	ENST00000375247	human	ensembl	74_37	-1	known	missense	c.3371	p.R1124H	0.335	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477				47	0	0	44	5	10.2041
TNXB	0	genome.wustl.edu	37	6	32063527	32063527	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	32063527	32063527	G	A	SNP	TNXB	ENST00000375247	human	ensembl	74_37	-1	known	silent	c.2103	p.G701	0.965	smart_EG-like_dom	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477				23	0	0	20	7	25.9259
NOTCH4	0	genome.wustl.edu	37	6	32165126	32165126	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	32165126	32165126	G	A	SNP	NOTCH4	ENST00000375023	human	ensembl	74_37	-1	known	missense	c.5002	p.R1668C	0.998	pirsf_Notch,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pirsf_Notch,pfam_EG-like_dom,pfam_Ankyrin_rpt,pfam_EGF-like_Ca-bd_dom,pfam_Notch_dom,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_4,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH4	HGNC	ENSG00000204301				45	0	0	44	11	20
NOTCH4	0	genome.wustl.edu	37	6	32166736	32166736	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	32166736	32166736	C	T	SNP	NOTCH4	ENST00000375023	human	ensembl	74_37	-1	known	missense	c.4502	p.R1501Q	1.000	pirsf_Notch	pirsf_Notch,pfam_EG-like_dom,pfam_Ankyrin_rpt,pfam_EGF-like_Ca-bd_dom,pfam_Notch_dom,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_4,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH4	HGNC	ENSG00000204301				77	0	0	72	27	27.2727
C6orf10	0	genome.wustl.edu	37	6	32261736	32261736	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	32261736	32261736	G	A	SNP	C6orf10	ENST00000447241	human	ensembl	74_37	-1	known	silent	c.714	p.G238	0.000	NULL	NULL	-	no_errors	C6orf10	HGNC	ENSG00000204296				120	0	0	125	12	8.75912
TAPSAR1	0	genome.wustl.edu	37	6	32813337	32813337	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	32813337	32813337	C	T	SNP	TAPSAR1	ENST00000412095	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.036	-	-	-	no_errors	TAPSAR1	HGNC	ENSG00000204261				30	0	0	37	7	15.9091
BRD2	0	genome.wustl.edu	37	6	32944496	32944496	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	32944496	32944496	G	A	SNP	BRD2	ENST00000395289	human	ensembl	74_37	+1	known	missense	c.983	p.R328H	0.503	superfamily_Bromodomain	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD2	HGNC	ENSG00000204256				125	0	0	108	16	12.9032
COL11A2	0	genome.wustl.edu	37	6	33138611	33138611	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	33138611	33138611	C	T	SNP	COL11A2	ENST00000341947	human	ensembl	74_37	-1	known	silent	c.3450	p.G1150	0.868	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A2	HGNC	ENSG00000204248				93	0	0	73	6	7.59494
VPS52	0	genome.wustl.edu	37	6	33236902	33236902	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	33236902	33236902	G	A	SNP	VPS52	ENST00000445902	human	ensembl	74_37	-1	known	missense	c.437	p.T146I	1.000	pfam_Vps52,pfam_Exocyst_Exoc1/SEC3	pfam_Vps52,pfam_Exocyst_Exoc1/SEC3	-	no_errors	VPS52	HGNC	ENSG00000223501				189	0	0	168	18	9.67742
TAPBP	0	genome.wustl.edu	37	6	33273060	33273060	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	33273060	33273060	C	T	SNP	TAPBP	ENST00000426633	human	ensembl	74_37	-1	known	missense	c.574	p.A192T	0.001	NULL	pfam_Ig_C1-set,pfscan_Ig-like_dom,prints_Tapasin	-	no_errors	TAPBP	HGNC	ENSG00000231925				44	0	0	26	7	21.2121
DAXX	0	genome.wustl.edu	37	6	33287520	33287520	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	33287520	33287520	C	T	SNP	DAXX	ENST00000266000	human	ensembl	74_37	-1	known	missense	c.1577	p.R526H	0.013	pfam_Daxx	pfam_Daxx	-	no_errors	DAXX	HGNC	ENSG00000204209				95	0	0	53	15	22.0588
KIFC1	0	genome.wustl.edu	37	6	33371778	33371778	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	33371778	33371778	C	T	SNP	KIFC1	ENST00000428849	human	ensembl	74_37	+1	known	missense	c.628	p.R210C	0.041	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIFC1	HGNC	ENSG00000237649				111	0	0	81	18	18.1818
PHF1	0	genome.wustl.edu	37	6	33380151	33380151	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	33380151	33380151	G	A	SNP	PHF1	ENST00000374516	human	ensembl	74_37	+1	known	silent	c.111	p.V37	0.654	smart_Tudor	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Tudor,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF1	HGNC	ENSG00000112511				78	0	0	66	16	19.5122
CUTA	0	genome.wustl.edu	37	6	33385291	33385291	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	33385291	33385291	C	T	SNP	CUTA	ENST00000374500	human	ensembl	74_37	-1	known	missense	c.281	p.C94Y	1.000	pfam_Ion_tolerance_CutA,superfamily_N-reg_PII-like_a/b	pfam_Ion_tolerance_CutA,superfamily_N-reg_PII-like_a/b	-	no_errors	CUTA	HGNC	ENSG00000112514				146	0	0	110	27	19.708
SYNGAP1	0	genome.wustl.edu	37	6	33403339	33403339	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	33403339	33403339	C	T	SNP	SYNGAP1	ENST00000418600	human	ensembl	74_37	+1	known	silent	c.711	p.A237	0.116	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DUF3498,pfam_RasGAP,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	SYNGAP1	HGNC	ENSG00000197283				239	0	0	235	18	7.11462
ITPR3	0	genome.wustl.edu	37	6	33646527	33646527	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	33646527	33646527	C	T	SNP	ITPR3	ENST00000374316	human	ensembl	74_37	+1	known	missense	c.3883	p.R1295C	1.000	pfam_Ca-rel_channel	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR3	HGNC	ENSG00000096433				28	0	0	27	4	12.9032
ITPR3	0	genome.wustl.edu	37	6	33661334	33661334	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	33661334	33661334	A	G	SNP	ITPR3	ENST00000374316	human	ensembl	74_37	+1	known	missense	c.7637	p.D2546G	1.000	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR3	HGNC	ENSG00000096433				40	0	0	50	9	15.2542
NUDT3	0	genome.wustl.edu	37	6	34309727	34309727	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	34309727	34309727	C	T	SNP	NUDT3	ENST00000607016	human	ensembl	74_37	-1	known	missense	c.122	p.R41H	1.000	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	NUDT3	HGNC	ENSG00000272325				61	0	0	38	14	26.9231
ANKS1A	0	genome.wustl.edu	37	6	34949512	34949512	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	34949512	34949512	C	T	SNP	ANKS1A	ENST00000360359	human	ensembl	74_37	+1	known	missense	c.481	p.H161Y	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_PTB/PI_dom,pfam_SAM_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,smart_PTB/PI_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PTB/PI_dom,pfscan_SAM,prints_Ankyrin_rpt	-	no_errors	ANKS1A	HGNC	ENSG00000064999				56	0	0	57	8	12.3077
ANKS1A	0	genome.wustl.edu	37	6	35053698	35053698	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	35053698	35053698	C	T	SNP	ANKS1A	ENST00000360359	human	ensembl	74_37	+1	known	silent	c.3288	p.G1096	0.946	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_PTB/PI_dom,pfam_SAM_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,smart_PTB/PI_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PTB/PI_dom,pfscan_SAM,prints_Ankyrin_rpt	-	no_errors	ANKS1A	HGNC	ENSG00000064999				18	0	0	15	8	34.7826
TCP11	0	genome.wustl.edu	37	6	35090014	35090014	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	35090014	35090014	G	A	SNP	TCP11	ENST00000311875	human	ensembl	74_37	-1	known	missense	c.497	p.A166V	0.473	pfam_Tcp11	pfam_Tcp11	-	no_errors	TCP11	HGNC	ENSG00000124678				111	0	0	105	22	17.3228
FANCE	0	genome.wustl.edu	37	6	35423937	35423937	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	35423937	35423937	G	A	SNP	FANCE	ENST00000229769	human	ensembl	74_37	+1	known	missense	c.662	p.R221Q	0.116	NULL	pfam_Fanconi_anaemia_gr_E_prot_C	-	no_errors	FANCE	HGNC	ENSG00000112039				98	0	0	103	6	5.50459
ARMC12	0	genome.wustl.edu	37	6	35716414	35716414	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	35716414	35716414	G	A	SNP	ARMC12	ENST00000288065	human	ensembl	74_37	+1	known	missense	c.871	p.A291T	0.000	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	ARMC12	HGNC	ENSG00000157343				76	0	0	56	12	17.6471
LHFPL5	0	genome.wustl.edu	37	6	35773525	35773525	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	35773525	35773525	C	T	SNP	LHFPL5	ENST00000360215	human	ensembl	74_37	+1	known	silent	c.78	p.G26	0.321	pfam_Lipome_HGMIC_fus_partner-like	pfam_Lipome_HGMIC_fus_partner-like	-	no_errors	LHFPL5	HGNC	ENSG00000197753				120	0	0	93	23	19.8276
LHFPL5	0	genome.wustl.edu	37	6	35773571	35773571	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	35773571	35773571	G	A	SNP	LHFPL5	ENST00000360215	human	ensembl	74_37	+1	known	missense	c.124	p.A42T	1.000	pfam_Lipome_HGMIC_fus_partner-like	pfam_Lipome_HGMIC_fus_partner-like	-	no_errors	LHFPL5	HGNC	ENSG00000197753				155	0	0	135	28	17.1779
MAPK14	0	genome.wustl.edu	37	6	36020576	36020576	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	36020576	36020576	C	T	SNP	MAPK14	ENST00000229794	human	ensembl	74_37	+1	known	missense	c.217	p.R73W	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_MAPK_p38	-	no_errors	MAPK14	HGNC	ENSG00000112062				94	0	0	74	18	19.5652
CPNE5	0	genome.wustl.edu	37	6	36767799	36767799	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	36767799	36767799	G	A	SNP	CPNE5	ENST00000244751	human	ensembl	74_37	-1	known	missense	c.232	p.R78C	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_Copine,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,smart_VWF_A,pfscan_C2_dom,pfscan_VWF_A	-	no_errors	CPNE5	HGNC	ENSG00000124772				37	0	0	44	17	27.8689
MTCH1	0	genome.wustl.edu	37	6	36938207	36938207	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	36938207	36938207	C	T	SNP	MTCH1	ENST00000373627	human	ensembl	74_37	-1	known	missense	c.997	p.D333N	0.999	superfamily_Mt_carrier_dom	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	MTCH1	HGNC	ENSG00000137409				89	0	0	71	16	18.3908
FGD2	0	genome.wustl.edu	37	6	36993700	36993700	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	36993700	36993700	C	T	SNP	FGD2	ENST00000274963	human	ensembl	74_37	+1	known	missense	c.1591	p.R531W	0.181	NULL	pfam_DH-domain,pfam_Znf_FYVE,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Znf_FYVE_PHD,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD2	HGNC	ENSG00000146192				32	0	0	26	6	18.75
CMTR1	0	genome.wustl.edu	37	6	37430612	37430612	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	37430612	37430612	G	A	SNP	CMTR1	ENST00000373451	human	ensembl	74_37	+1	known	missense	c.1333	p.V445M	1.000	pfam_rRNA_MeTrfase_FtsJ_dom	pfam_rRNA_MeTrfase_FtsJ_dom,pfam_G_patch_dom,smart_G_patch_dom,smart_WW_dom,pfscan_G_patch_dom	-	no_errors	CMTR1	HGNC	ENSG00000137200				72	0	0	70	4	5.40541
MDGA1	0	genome.wustl.edu	37	6	37622633	37622633	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	37622633	37622633	G	A	SNP	MDGA1	ENST00000297153	human	ensembl	74_37	-1	known	missense	c.655	p.R219C	0.995	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_MAM_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_MAM_dom,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Ig-like_dom	-	no_errors	MDGA1	HGNC	ENSG00000112139				118	0	0	93	26	21.8487
ZFAND3	0	genome.wustl.edu	37	6	38120051	38120051	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	38120051	38120051	C	T	SNP	ZFAND3	ENST00000287218	human	ensembl	74_37	+1	known	silent	c.570	p.H190	0.828	pfam_Znf_AN1,smart_Znf_AN1,pfscan_Znf_AN1	pfam_Znf_AN1,pfam_Znf_A20,smart_Znf_A20,smart_Znf_AN1,pfscan_Znf_A20,pfscan_Znf_AN1	-	no_errors	ZFAND3	HGNC	ENSG00000156639				116	0	0	83	21	20.1923
FAM50B	0	genome.wustl.edu	37	6	3850869	3850869	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	3850869	3850869	G	A	SNP	FAM50B	ENST00000380272	human	ensembl	74_37	+1	novel	missense	c.824	p.R275H	1.000	pfam_XAP5	pfam_XAP5	-	no_errors	FAM50B	HGNC	ENSG00000145945				53	0	0	39	9	18.75
DNAH8	0	genome.wustl.edu	37	6	38781840	38781840	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	38781840	38781840	C	T	SNP	DNAH8	ENST00000359357	human	ensembl	74_37	+1	known	nonsense	c.2617	p.R873*	0.411	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721				143	0	0	112	23	17.037
DNAH8	0	genome.wustl.edu	37	6	38840404	38840404	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	38840404	38840404	G	A	SNP	DNAH8	ENST00000359357	human	ensembl	74_37	+1	known	silent	c.6432	p.A2144	0.000	pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721				112	0	0	107	7	6.14035
DNAH8	0	genome.wustl.edu	37	6	38840416	38840416	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	38840416	38840416	C	T	SNP	DNAH8	ENST00000359357	human	ensembl	74_37	+1	known	silent	c.6444	p.C2148	0.024	pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721				121	0	0	103	14	11.9658
KCNK5	0	genome.wustl.edu	37	6	39158947	39158947	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	39158947	39158947	C	T	SNP	KCNK5	ENST00000359534	human	ensembl	74_37	-1	known	missense	c.1219	p.A407T	0.678	NULL	pfam_2pore_dom_K_chnl_dom,prints_2pore_dom_K_chnl,prints_2pore_dom_K_chnl_TASK	-	no_errors	KCNK5	HGNC	ENSG00000164626				61	0	0	42	7	14.2857
DAAM2	0	genome.wustl.edu	37	6	39847178	39847178	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	39847178	39847178	C	T	SNP	DAAM2	ENST00000274867	human	ensembl	74_37	+1	known	silent	c.1770	p.D590	0.000	NULL	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	DAAM2	HGNC	ENSG00000146122				97	0	0	91	7	7.14286
LRFN2	0	genome.wustl.edu	37	6	40400194	40400194	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	40400194	40400194	C	T	SNP	LRFN2	ENST00000338305	human	ensembl	74_37	-1	known	missense	c.659	p.R220H	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRFN2	HGNC	ENSG00000156564				39	0	0	32	8	20
UNC5CL	0	genome.wustl.edu	37	6	41000791	41000791	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	41000791	41000791	A	G	SNP	UNC5CL	ENST00000244565	human	ensembl	74_37	-1	known	missense	c.781	p.S261P	0.992	NULL	pfam_ZU5,pfam_Death_domain,superfamily_DEATH-like_dom,smart_ZU5,smart_Death_domain,pfscan_Death_domain,pfscan_ZU5	-	no_errors	UNC5CL	HGNC	ENSG00000124602				21	0	0	9	4	30.7692
UNC5CL	0	genome.wustl.edu	37	6	41002811	41002811	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	41002811	41002811	C	T	SNP	UNC5CL	ENST00000244565	human	ensembl	74_37	-1	known	missense	c.3	p.M1I	0.974	NULL	pfam_ZU5,pfam_Death_domain,superfamily_DEATH-like_dom,smart_ZU5,smart_Death_domain,pfscan_Death_domain,pfscan_ZU5	-	no_errors	UNC5CL	HGNC	ENSG00000124602				50	0	0	44	4	8.33333
TFEB	0	genome.wustl.edu	37	6	41654874	41654874	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	41654874	41654874	C	T	SNP	TFEB	ENST00000230323	human	ensembl	74_37	-1	known	missense	c.761	p.R254H	1.000	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	pfam_bHLH_ZIP_TF_MiT/TFE,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	TFEB	HGNC	ENSG00000112561				55	0	0	47	8	14.5455
PGC	0	genome.wustl.edu	37	6	41710065	41710065	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	41710065	41710065	C	T	SNP	PGC	ENST00000373025	human	ensembl	74_37	-1	known	missense	c.610	p.A204T	0.000	pfam_Aspartic_peptidase,superfamily_Peptidase_aspartic_dom	pfam_Aspartic_peptidase,pfam_Aspartic_peptidase_N,superfamily_Peptidase_aspartic_dom,prints_Aspartic_peptidase	-	no_errors	PGC	HGNC	ENSG00000096088				39	0	0	30	10	25
PGC	0	genome.wustl.edu	37	6	41711128	41711128	+	Splice_Site	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	41711128	41711128	C	T	SNP	PGC	ENST00000373025	human	ensembl	74_37	-1	known	splice_site	c.329-1	e4-1	0.998	-	-	-	no_errors	PGC	HGNC	ENSG00000096088				63	0	0	54	9	14.2857
USP49	0	genome.wustl.edu	37	6	41773964	41773964	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	41773964	41773964	G	A	SNP	USP49	ENST00000373009	human	ensembl	74_37	-1	known	missense	c.758	p.T253M	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP49	HGNC	ENSG00000164663				47	0	0	45	12	21.0526
MED20	0	genome.wustl.edu	37	6	41884626	41884626	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	41884626	41884626	C	T	SNP	MED20	ENST00000265350	human	ensembl	74_37	-1	known	silent	c.66	p.E22	0.998	pfam_Mediator_Med20	pfam_Mediator_Med20	-	no_errors	MED20	HGNC	ENSG00000124641				89	0	0	71	16	18.3908
TRERF1	0	genome.wustl.edu	37	6	42227309	42227309	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	42227309	42227309	G	A	SNP	TRERF1	ENST00000541110	human	ensembl	74_37	-1	known	silent	c.2097	p.G699	1.000	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_SANT/Myb,pfscan_ELM2_dom,pfscan_Znf_C2H2	-	no_errors	TRERF1	HGNC	ENSG00000124496				37	0	0	20	5	20
GLTSCR1L	0	genome.wustl.edu	37	6	42796383	42796383	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	42796383	42796383	C	T	SNP	GLTSCR1L	ENST00000314073	human	ensembl	74_37	+1	known	silent	c.312	p.D104	1.000	NULL	NULL	-	no_errors	GLTSCR1L	HGNC	ENSG00000112624				117	0	0	101	27	21.0938
MRPL2	0	genome.wustl.edu	37	6	43024152	43024152	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	43024152	43024152	G	A	SNP	MRPL2	ENST00000388752	human	ensembl	74_37	-1	known	silent	c.297	p.G99	1.000	pfam_Rbsml_prot_L2_RNA-bd_dom,superfamily_NA-bd_OB-fold	pfam_Ribosomal_L2_C,pfam_Rbsml_prot_L2_RNA-bd_dom,superfamily_Translation_prot_SH3-like,superfamily_NA-bd_OB-fold	-	no_errors	MRPL2	HGNC	ENSG00000112651				32	0	0	18	6	25
KLC4	0	genome.wustl.edu	37	6	43034106	43034106	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	43034106	43034106	C	T	SNP	KLC4	ENST00000259708	human	ensembl	74_37	+1	known	missense	c.688	p.R230W	1.000	pfam_Rabaptin_Rab5-bd_dom,pfscan_TPR-contain_dom,prints_Kinesin_light	pfam_Rabaptin_Rab5-bd_dom,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Kinesin_light	-	no_errors	KLC4	HGNC	ENSG00000137171				81	0	0	102	19	15.7025
TTBK1	0	genome.wustl.edu	37	6	43225666	43225666	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	43225666	43225666	G	A	SNP	TTBK1	ENST00000259750	human	ensembl	74_37	+1	known	silent	c.978	p.P326	0.020	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TTBK1	HGNC	ENSG00000146216				54	0	0	31	8	20.5128
ABCC10	0	genome.wustl.edu	37	6	43406513	43406513	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	43406513	43406513	G	A	SNP	ABCC10	ENST00000372530	human	ensembl	74_37	+1	known	missense	c.2107	p.A703T	1.000	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC10	HGNC	ENSG00000124574				75	0	0	63	18	22.2222
ABCC10	0	genome.wustl.edu	37	6	43414079	43414079	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	43414079	43414079	A	G	SNP	ABCC10	ENST00000372530	human	ensembl	74_37	+1	known	missense	c.3439	p.T1147A	0.002	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC10	HGNC	ENSG00000124574				84	0	0	55	8	12.6984
RSPH9	0	genome.wustl.edu	37	6	43638573	43638573	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	43638573	43638573	C	T	SNP	RSPH9	ENST00000372165	human	ensembl	74_37	+1	known	missense	c.770	p.A257V	1.000	NULL	NULL	-	no_errors	RSPH9	HGNC	ENSG00000172426				47	0	0	35	5	12.5
TMEM63B	0	genome.wustl.edu	37	6	44115223	44115223	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	44115223	44115223	C	T	SNP	TMEM63B	ENST00000259746	human	ensembl	74_37	+1	known	nonsense	c.973	p.R325*	0.039	NULL	pfam_DUF221	-	no_errors	TMEM63B	HGNC	ENSG00000137216				39	0	0	47	11	18.9655
TCTE1	0	genome.wustl.edu	37	6	44248038	44248038	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	44248038	44248038	G	A	SNP	TCTE1	ENST00000371505	human	ensembl	74_37	-1	known	silent	c.1386	p.S462	1.000	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	TCTE1	HGNC	ENSG00000146221				61	0	0	54	10	15.625
CDC5L	0	genome.wustl.edu	37	6	44364110	44364110	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	44364110	44364110	C	T	SNP	CDC5L	ENST00000371477	human	ensembl	74_37	+1	known	missense	c.472	p.R158C	1.000	NULL	pfam_DUF3351,pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	CDC5L	HGNC	ENSG00000096401				208	0	0	177	43	19.5455
CDC5L	0	genome.wustl.edu	37	6	44376319	44376319	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	44376319	44376319	G	A	SNP	CDC5L	ENST00000371477	human	ensembl	74_37	+1	known	missense	c.1042	p.V348I	0.170	pfam_DUF3351	pfam_DUF3351,pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	CDC5L	HGNC	ENSG00000096401				131	1	0.757576	103	25	19.5312
SUPT3H	0	genome.wustl.edu	37	6	44922276	44922276	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	44922276	44922276	C	T	SNP	SUPT3H	ENST00000371460	human	ensembl	74_37	-1	known	missense	c.682	p.A228T	0.993	NULL	pfam_TFIID-18,superfamily_Histone-fold	-	no_errors	SUPT3H	HGNC	ENSG00000196284				87	0	0	87	7	7.44681
CLIC5	0	genome.wustl.edu	37	6	45922936	45922936	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	45922936	45922936	G	A	SNP	CLIC5	ENST00000185206	human	ensembl	74_37	-1	known	missense	c.586	p.R196C	1.000	superfamily_Thioredoxin-like_fold,tigrfam_Int_Cl_channel	superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_Int_Cl_channel,tigrfam_Int_Cl_channel	-	no_errors	CLIC5	HGNC	ENSG00000112782				49	0	0	47	24	33.8028
ENPP4	0	genome.wustl.edu	37	6	46111218	46111218	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	46111218	46111218	C	T	SNP	ENPP4	ENST00000321037	human	ensembl	74_37	+1	known	silent	c.1203	p.C401	1.000	NULL	pfam_Phosphodiest/P_Trfase,pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ENPP4	HGNC	ENSG00000001561				160	0	0	150	29	16.2011
TDRD6	0	genome.wustl.edu	37	6	46657655	46657655	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	46657655	46657655	C	T	SNP	TDRD6	ENST00000316081	human	ensembl	74_37	+1	known	missense	c.1790	p.A597V	1.000	pfam_Tudor	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD6	HGNC	ENSG00000180113				79	0	0	72	15	17.2414
GPR116	0	genome.wustl.edu	37	6	46828556	46828556	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	46828556	46828556	C	T	SNP	GPR116	ENST00000265417	human	ensembl	74_37	-1	known	missense	c.2275	p.A759T	0.000	NULL	pfam_GPCR_2_secretin-like,pfam_SEA_dom,pfam_GPS_dom,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,pfscan_Ig-like_dom,prints_GPCR_2_Ig-hepta_rcpt,prints_GPCR_2_secretin-like	-	no_errors	GPR116	HGNC	ENSG00000069122				86	0	0	96	7	6.79612
TNFRSF21	0	genome.wustl.edu	37	6	47253980	47253980	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	47253980	47253980	A	G	SNP	TNFRSF21	ENST00000296861	human	ensembl	74_37	-1	known	missense	c.448	p.C150R	1.000	smart_TNFR/NGFR_Cys_rich_reg	pfam_Death_domain,superfamily_DEATH-like_dom,smart_TNFR/NGFR_Cys_rich_reg,smart_Death_domain,pfscan_Death_domain,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_21	-	no_errors	TNFRSF21	HGNC	ENSG00000146072				173	0	0	184	31	14.4186
PTCHD4	0	genome.wustl.edu	37	6	47847321	47847321	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	47847321	47847321	A	G	SNP	PTCHD4	ENST00000339488	human	ensembl	74_37	-1	known	missense	c.1259	p.V420A	1.000	pfam_Patched	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD4	HGNC	ENSG00000244694				73	0	0	58	14	19.4444
TFAP2B	0	genome.wustl.edu	37	6	50796340	50796340	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	50796340	50796340	A	C	SNP	TFAP2B	ENST00000263046	human	ensembl	74_37	+1	known	missense	c.576	p.E192D	1.000	NULL	pfam_TF_AP2_C,prints_TF_AP2_beta,prints_TF_AP2_C	-	no_errors	TFAP2B	HGNC	ENSG00000008196				98	0	0	79	27	25.4717
PKHD1	0	genome.wustl.edu	37	6	51484273	51484273	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	51484273	51484273	T	C	SNP	PKHD1	ENST00000371117	human	ensembl	74_37	-1	known	missense	c.11831	p.H3944R	0.758	NULL	pfam_IPT,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT,smart_PbH1	-	no_errors	PKHD1	HGNC	ENSG00000170927				101	0	0	69	18	20.6897
PKHD1	0	genome.wustl.edu	37	6	51771122	51771122	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	51771122	51771122	G	A	SNP	PKHD1	ENST00000371117	human	ensembl	74_37	-1	known	silent	c.6699	p.G2233	0.828	superfamily_Pectin_lyase_fold/virulence,smart_PbH1	pfam_IPT,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT,smart_PbH1	-	no_errors	PKHD1	HGNC	ENSG00000170927				66	0	0	81	8	8.98876
PKHD1	0	genome.wustl.edu	37	6	51900433	51900433	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	51900433	51900433	C	T	SNP	PKHD1	ENST00000371117	human	ensembl	74_37	-1	known	missense	c.3184	p.A1062T	0.000	pfam_IPT,superfamily_Ig_E-set,smart_IPT	pfam_IPT,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT,smart_PbH1	-	no_errors	PKHD1	HGNC	ENSG00000170927				164	0	0	130	25	16.129
ICK	0	genome.wustl.edu	37	6	52883237	52883237	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	52883237	52883237	G	A	SNP	ICK	ENST00000350082	human	ensembl	74_37	-1	known	missense	c.554	p.A185V	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ICK	HGNC	ENSG00000112144				121	0	0	98	17	14.7826
GCM1	0	genome.wustl.edu	37	6	52996822	52996822	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	52996822	52996822	G	A	SNP	GCM1	ENST00000259803	human	ensembl	74_37	-1	known	missense	c.424	p.R142C	1.000	pfam_Tscrpt_reg_GCM_motif,superfamily_Tscrpt_reg_GCM_motif,pfscan_Tscrpt_reg_GCM_motif	pfam_Tscrpt_reg_GCM_motif,superfamily_Tscrpt_reg_GCM_motif,pfscan_Tscrpt_reg_GCM_motif	-	no_errors	GCM1	HGNC	ENSG00000137270				46	0	0	49	5	9.25926
KLHL31	0	genome.wustl.edu	37	6	53516493	53516493	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	53516493	53516493	G	A	SNP	KLHL31	ENST00000370905	human	ensembl	74_37	-1	known	missense	c.1808	p.A603V	1.000	smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_DUF1668_ORYSA,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL31	HGNC	ENSG00000124743				79	0	0	50	7	12.2807
FARS2	0	genome.wustl.edu	37	6	5368994	5368994	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	5368994	5368994	G	A	SNP	FARS2	ENST00000274680	human	ensembl	74_37	+1	known	missense	c.191	p.S64N	0.997	NULL	pfam_Phenylalanyl-tRNA_Synthase,pfam_PheS_beta_Fdx_antiC-bd,superfamily_PheS_beta_Fdx_antiC-bd,smart_PheS_beta_Fdx_antiC-bd,pfscan_aa-tRNA-synth_II,tigrfam_Phe-tRNA-synth_IIc_mito	-	no_errors	FARS2	HGNC	ENSG00000145982				39	0	0	52	5	8.77193
EXOC2	0	genome.wustl.edu	37	6	549284	549284	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	549284	549284	C	T	SNP	EXOC2	ENST00000230449	human	ensembl	74_37	-1	known	missense	c.2129	p.R710H	0.948	NULL	pfam_IPT,superfamily_Ig_E-set,superfamily_Cullin_repeat-like_dom	-	no_errors	EXOC2	HGNC	ENSG00000112685				124	0	0	102	16	13.5593
GFRAL	0	genome.wustl.edu	37	6	55216125	55216125	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	55216125	55216125	G	A	SNP	GFRAL	ENST00000340465	human	ensembl	74_37	+1	known	missense	c.445	p.A149T	1.000	pfam_GDNF/GAS1,smart_GDNF/GAS1	pfam_GDNF/GAS1,smart_GDNF/GAS1	-	no_errors	GFRAL	HGNC	ENSG00000187871				209	0	0	178	43	19.457
BMP5	0	genome.wustl.edu	37	6	55623844	55623844	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	55623844	55623844	C	T	SNP	BMP5	ENST00000370830	human	ensembl	74_37	-1	known	missense	c.1174	p.A392T	1.000	pfam_TGF-b_C,smart_TGF-b_C	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	BMP5	HGNC	ENSG00000112175				115	0	0	128	19	12.9252
DST	0	genome.wustl.edu	37	6	56392496	56392496	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	56392496	56392496	G	A	SNP	DST	ENST00000370754	human	ensembl	74_37	-1	known	missense	c.17624	p.A5875V	1.000	superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	DST	HGNC	ENSG00000151914				33	0	0	45	4	8.16327
DST	0	genome.wustl.edu	37	6	56464943	56464943	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	56464943	56464943	C	T	SNP	DST	ENST00000370754	human	ensembl	74_37	-1	known	missense	c.11525	p.R3842H	0.997	superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	DST	HGNC	ENSG00000151914				126	0	0	85	20	19.0476
DST	0	genome.wustl.edu	37	6	56489313	56489313	+	Silent	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	56489313	56489313	A	G	SNP	DST	ENST00000518935	human	ensembl	74_37	-1	putative	silent	c.3333	p.S1111	0.000	NULL	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	-	no_errors	DST	HGNC	ENSG00000151914				56	0	0	56	9	13.8462
DST	0	genome.wustl.edu	37	6	56499320	56499320	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	56499320	56499320	A	G	SNP	DST	ENST00000370754	human	ensembl	74_37	-1	known	missense	c.3335	p.V1112A	1.000	superfamily_ABC1_TM_dom	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	DST	HGNC	ENSG00000151914				67	0	0	61	22	26.506
BEND6	0	genome.wustl.edu	37	6	56880071	56880071	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	56880071	56880071	A	G	SNP	BEND6	ENST00000370746	human	ensembl	74_37	+1	known	missense	c.439	p.T147A	0.000	NULL	pfam_BEN_domain	-	no_errors	BEND6	HGNC	ENSG00000151917				158	0	0	143	21	12.8049
KIAA1586	0	genome.wustl.edu	37	6	56917800	56917800	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	56917800	56917800	G	A	SNP	KIAA1586	ENST00000370733	human	ensembl	74_37	+1	known	missense	c.503	p.R168Q	0.637	NULL	superfamily_RNaseH-like_dom	-	no_errors	KIAA1586	HGNC	ENSG00000168116				93	0	0	109	17	13.4921
KIAA1586	0	genome.wustl.edu	37	6	56918150	56918150	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	56918150	56918150	C	T	SNP	KIAA1586	ENST00000370733	human	ensembl	74_37	+1	known	missense	c.853	p.R285C	0.010	NULL	superfamily_RNaseH-like_dom	-	no_errors	KIAA1586	HGNC	ENSG00000168116				57	0	0	39	8	17.0213
EXOC2	0	genome.wustl.edu	37	6	576783	576783	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	576783	576783	C	A	SNP	EXOC2	ENST00000230449	human	ensembl	74_37	-1	known	missense	c.1292	p.S431I	1.000	NULL	pfam_IPT,superfamily_Ig_E-set,superfamily_Cullin_repeat-like_dom	-	no_errors	EXOC2	HGNC	ENSG00000112685				54	0	0	43	14	24.5614
PTP4A1	0	genome.wustl.edu	37	6	64286802	64286802	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	64286802	64286802	G	A	SNP	PTP4A1	ENST00000370651	human	ensembl	74_37	+1	known	missense	c.17	p.R6H	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Dual-sp_phosphatase_cat-dom,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase	-	no_errors	PTP4A1	HGNC	ENSG00000112245				56	0	0	59	16	21.3333
EYS	0	genome.wustl.edu	37	6	66200576	66200576	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	66200576	66200576	C	A	SNP	EYS	ENST00000370616	human	ensembl	74_37	-1	known	missense	c.773	p.G258V	0.958	pfscan_EG-like_dom	pfam_Laminin_G,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	EYS	HGNC	ENSG00000188107				50	0	0	34	12	26.087
BAI3	0	genome.wustl.edu	37	6	69665995	69665995	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	69665995	69665995	G	A	SNP	BAI3	ENST00000370598	human	ensembl	74_37	+1	known	silent	c.1275	p.R425	0.999	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_CUB_dom,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI3	HGNC	ENSG00000135298				33	0	0	42	8	16
BAI3	0	genome.wustl.edu	37	6	69666038	69666038	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	69666038	69666038	C	T	SNP	BAI3	ENST00000370598	human	ensembl	74_37	+1	known	missense	c.1318	p.P440S	0.999	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_CUB_dom,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI3	HGNC	ENSG00000135298				37	0	0	38	11	22.449
BAI3	0	genome.wustl.edu	37	6	69703826	69703826	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	69703826	69703826	G	T	SNP	BAI3	ENST00000370598	human	ensembl	74_37	+1	known	missense	c.1901	p.S634I	1.000	pfam_DUF3497	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_CUB_dom,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI3	HGNC	ENSG00000135298				92	0	0	107	12	10.084
BAI3	0	genome.wustl.edu	37	6	70098714	70098714	+	Silent	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	70098714	70098714	A	G	SNP	BAI3	ENST00000370598	human	ensembl	74_37	+1	known	silent	c.4500	p.P1500	0.869	NULL	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_CUB_dom,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI3	HGNC	ENSG00000135298				70	0	0	72	10	12.1951
COL19A1	0	genome.wustl.edu	37	6	70639416	70639416	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	70639416	70639416	C	T	SNP	COL19A1	ENST00000322773	human	ensembl	74_37	+1	known	missense	c.490	p.R164C	0.707	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_Collagen,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	-	no_errors	COL19A1	HGNC	ENSG00000082293				78	0	0	64	9	12.3288
COL19A1	0	genome.wustl.edu	37	6	70639518	70639518	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	70639518	70639518	G	A	SNP	COL19A1	ENST00000322773	human	ensembl	74_37	+1	known	missense	c.592	p.D198N	0.058	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_Collagen,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	-	no_errors	COL19A1	HGNC	ENSG00000082293				122	0	0	118	9	7.08661
COL9A1	0	genome.wustl.edu	37	6	71003937	71003937	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	71003937	71003937	C	T	SNP	COL9A1	ENST00000357250	human	ensembl	74_37	-1	known	missense	c.629	p.G210D	0.992	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_Collagen,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	-	no_errors	COL9A1	HGNC	ENSG00000112280				147	0	0	132	44	25
SMAP1	0	genome.wustl.edu	37	6	71442157	71442157	+	Silent	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	71442157	71442157	T	C	SNP	SMAP1	ENST00000370455	human	ensembl	74_37	+1	known	silent	c.195	p.V65	0.999	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	SMAP1	HGNC	ENSG00000112305				88	0	0	54	14	20.5882
RREB1	0	genome.wustl.edu	37	6	7229286	7229286	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	7229286	7229286	C	T	SNP	RREB1	ENST00000379938	human	ensembl	74_37	+1	known	silent	c.954	p.C318	0.950	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RREB1	HGNC	ENSG00000124782				34	0	0	32	5	13.5135
RREB1	0	genome.wustl.edu	37	6	7229303	7229303	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	7229303	7229303	C	T	SNP	RREB1	ENST00000379938	human	ensembl	74_37	+1	known	missense	c.971	p.A324V	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RREB1	HGNC	ENSG00000124782				33	0	0	28	4	12.5
RREB1	0	genome.wustl.edu	37	6	7247285	7247285	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	7247285	7247285	C	T	SNP	RREB1	ENST00000379938	human	ensembl	74_37	+1	known	silent	c.4602	p.S1534	0.017	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RREB1	HGNC	ENSG00000124782				36	0	0	26	6	18.75
RIMS1	0	genome.wustl.edu	37	6	73016981	73016981	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	73016981	73016981	C	T	SNP	RIMS1	ENST00000521978	human	ensembl	74_37	+1	known	nonsense	c.3871	p.R1291*	1.000	NULL	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS1	HGNC	ENSG00000079841				34	0	0	42	7	14.2857
KCNQ5	0	genome.wustl.edu	37	6	73787158	73787158	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	73787158	73787158	C	T	SNP	KCNQ5	ENST00000402622	human	ensembl	74_37	+1	known	missense	c.730	p.R244C	1.000	pfam_Ion_trans_dom,prints_K_chnl	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ5	HGNC	ENSG00000185760				57	0	0	31	15	32.6087
KCNQ5	0	genome.wustl.edu	37	6	73879485	73879485	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	73879485	73879485	C	T	SNP	KCNQ5	ENST00000402622	human	ensembl	74_37	+1	known	silent	c.1515	p.G505	1.000	pfam_K_chnl_volt-dep_KCNQ_C	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ5	HGNC	ENSG00000185760				84	0	0	89	23	20.5357
DDX43	0	genome.wustl.edu	37	6	74123695	74123695	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	74123695	74123695	C	T	SNP	DDX43	ENST00000370336	human	ensembl	74_37	+1	known	missense	c.1499	p.A500V	1.000	superfamily_P-loop_NTPase,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_KH_dom_type_1,superfamily_P-loop_NTPase,smart_KH_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_KH_dom_type_1,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX43	HGNC	ENSG00000080007				41	0	0	26	25	49.0196
DSP	0	genome.wustl.edu	37	6	7583315	7583315	+	Silent	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	7583315	7583315	T	C	SNP	DSP	ENST00000379802	human	ensembl	74_37	+1	known	silent	c.5820	p.D1940	0.474	NULL	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DSP	HGNC	ENSG00000096696				87	0	0	84	22	20.7547
COL12A1	0	genome.wustl.edu	37	6	75839850	75839850	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	75839850	75839850	C	A	SNP	COL12A1	ENST00000322507	human	ensembl	74_37	-1	known	missense	c.6167	p.R2056M	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799				98	0	0	94	14	12.963
DSP	0	genome.wustl.edu	37	6	7584793	7584793	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	7584793	7584793	G	A	SNP	DSP	ENST00000379802	human	ensembl	74_37	+1	known	missense	c.7298	p.C2433Y	1.000	smart_Plectin_repeat	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DSP	HGNC	ENSG00000096696				164	0	0	145	19	11.5854
FILIP1	0	genome.wustl.edu	37	6	76023157	76023157	+	Silent	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	76023157	76023157	A	G	SNP	FILIP1	ENST00000237172	human	ensembl	74_37	-1	known	silent	c.2391	p.D797	0.934	NULL	pfam_Cortactin-binding_p2_N,prints_Tropomyosin	-	no_errors	FILIP1	HGNC	ENSG00000118407				130	0	0	131	37	22.0238
SNRNP48	0	genome.wustl.edu	37	6	7606353	7606353	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	7606353	7606353	G	T	SNP	SNRNP48	ENST00000342415	human	ensembl	74_37	+1	known	missense	c.896	p.R299M	0.466	NULL	pfam_TRM13/UPF0224_CHHC_Znf_dom	-	no_errors	SNRNP48	HGNC	ENSG00000168566				108	0	0	84	16	16
PHIP	0	genome.wustl.edu	37	6	79695140	79695140	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	79695140	79695140	G	A	SNP	PHIP	ENST00000275034	human	ensembl	74_37	-1	known	silent	c.2466	p.G822	0.972	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quinonprotein_ADH-like_supfam,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	PHIP	HGNC	ENSG00000146247				133	0	0	128	28	17.9487
PHIP	0	genome.wustl.edu	37	6	79708078	79708078	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	79708078	79708078	T	G	SNP	PHIP	ENST00000275034	human	ensembl	74_37	-1	known	missense	c.1910	p.N637T	1.000	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quinonprotein_ADH-like_supfam,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	PHIP	HGNC	ENSG00000146247				63	0	0	60	15	20
ELOVL4	0	genome.wustl.edu	37	6	80635973	80635973	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	80635973	80635973	G	A	SNP	ELOVL4	ENST00000369816	human	ensembl	74_37	-1	known	missense	c.226	p.R76C	1.000	pfam_GNS1_SUR4	pfam_GNS1_SUR4	-	no_errors	ELOVL4	HGNC	ENSG00000118402				72	0	0	62	13	17.3333
TTK	0	genome.wustl.edu	37	6	80751905	80751905	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	80751905	80751905	A	G	SNP	TTK	ENST00000369798	human	ensembl	74_37	+1	known	missense	c.2560	p.R854G	0.014	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TTK	HGNC	ENSG00000112742				56	0	0	52	4	7.14286
IBTK	0	genome.wustl.edu	37	6	82933304	82933304	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	82933304	82933304	A	G	SNP	IBTK	ENST00000306270	human	ensembl	74_37	-1	known	missense	c.977	p.V326A	1.000	superfamily_RCC1/BLIP-II	pfam_Reg_chr_condens,pfam_BTB_POZ,pfam_Ankyrin_rpt,superfamily_RCC1/BLIP-II,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like,pfscan_Reg_chr_condens	-	no_errors	IBTK	HGNC	ENSG00000005700				82	0	0	62	8	11.4286
DOPEY1	0	genome.wustl.edu	37	6	83835317	83835317	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	83835317	83835317	A	T	SNP	DOPEY1	ENST00000349129	human	ensembl	74_37	+1	known	missense	c.1584	p.E528D	1.000	superfamily_ARM-type_fold	pfam_Dopey_N,superfamily_ARM-type_fold	-	no_errors	DOPEY1	HGNC	ENSG00000083097				113	0	0	89	15	14.4231
DOPEY1	0	genome.wustl.edu	37	6	83845508	83845508	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	83845508	83845508	T	C	SNP	DOPEY1	ENST00000349129	human	ensembl	74_37	+1	known	missense	c.3041	p.V1014A	1.000	superfamily_ARM-type_fold	pfam_Dopey_N,superfamily_ARM-type_fold	-	no_errors	DOPEY1	HGNC	ENSG00000083097				157	0	0	146	12	7.59494
DOPEY1	0	genome.wustl.edu	37	6	83848526	83848526	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	83848526	83848526	C	T	SNP	DOPEY1	ENST00000349129	human	ensembl	74_37	+1	known	silent	c.4765	p.L1589	1.000	superfamily_ARM-type_fold	pfam_Dopey_N,superfamily_ARM-type_fold	-	no_errors	DOPEY1	HGNC	ENSG00000083097				123	0	0	97	25	20.4918
DOPEY1	0	genome.wustl.edu	37	6	83863283	83863283	+	Silent	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	83863283	83863283	T	C	SNP	DOPEY1	ENST00000349129	human	ensembl	74_37	+1	known	silent	c.6183	p.V2061	0.982	superfamily_ARM-type_fold	pfam_Dopey_N,superfamily_ARM-type_fold	-	no_errors	DOPEY1	HGNC	ENSG00000083097				117	0	0	104	9	7.9646
DOPEY1	0	genome.wustl.edu	37	6	83877659	83877659	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	83877659	83877659	C	T	SNP	DOPEY1	ENST00000349129	human	ensembl	74_37	+1	known	missense	c.7171	p.R2391C	1.000	NULL	pfam_Dopey_N,superfamily_ARM-type_fold	-	no_errors	DOPEY1	HGNC	ENSG00000083097				41	0	0	45	6	11.7647
PGM3	0	genome.wustl.edu	37	6	83900638	83900638	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	83900638	83900638	C	T	SNP	PGM3	ENST00000513973	human	ensembl	74_37	-1	known	missense	c.94	p.A32T	1.000	pirsf_PAGM	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-II,pfam_A-D-PHexomutase_C,superfamily_A-D-PHexomutase_a/b/a-I/II/III,pirsf_PAGM	-	no_errors	PGM3	HGNC	ENSG00000013375				100	0	0	93	13	12.2642
SLC35B3	0	genome.wustl.edu	37	6	8428259	8428259	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	8428259	8428259	G	A	SNP	SLC35B3	ENST00000379660	human	ensembl	74_37	-1	known	silent	c.330	p.S110	1.000	pfam_UAA	pfam_UAA	-	no_errors	SLC35B3	HGNC	ENSG00000124786				226	0	0	216	38	14.9606
SYNCRIP	0	genome.wustl.edu	37	6	86324613	86324613	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	86324613	86324613	C	T	SNP	SYNCRIP	ENST00000369622	human	ensembl	74_37	-1	known	missense	c.1733	p.R578H	1.000	tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	SYNCRIP	HGNC	ENSG00000135316				111	0	0	108	20	15.625
HTR1E	0	genome.wustl.edu	37	6	87725357	87725357	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	87725357	87725357	A	G	SNP	HTR1E	ENST00000305344	human	ensembl	74_37	+1	known	missense	c.305	p.D102G	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_5HT_rcpt	-	no_errors	HTR1E	HGNC	ENSG00000168830				74	0	0	69	16	18.8235
HTR1E	0	genome.wustl.edu	37	6	87725457	87725457	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	87725457	87725457	G	A	SNP	HTR1E	ENST00000305344	human	ensembl	74_37	+1	known	silent	c.405	p.T135	0.071	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_5HT_rcpt	-	no_errors	HTR1E	HGNC	ENSG00000168830				89	0	0	71	11	13.4146
SMIM8	0	genome.wustl.edu	37	6	88049953	88049953	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	88049953	88049953	G	A	SNP	SMIM8	ENST00000229570	human	ensembl	74_37	+1	known	silent	c.255	p.G85	0.956	NULL	NULL	-	no_errors	SMIM8	HGNC	ENSG00000111850				76	0	0	83	24	22.4299
C6orf165	0	genome.wustl.edu	37	6	88128088	88128088	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	88128088	88128088	C	T	SNP	C6orf165	ENST00000369562	human	ensembl	74_37	+1	known	missense	c.794	p.A265V	0.994	pfam_DUF3508	pfam_DUF3508	-	no_errors	C6ORF165	Uniprot_gn	ENSG00000272514				146	0	0	107	24	18.3206
ORC3	0	genome.wustl.edu	37	6	88321908	88321908	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	88321908	88321908	G	A	SNP	ORC3	ENST00000257789	human	ensembl	74_37	+1	known	missense	c.815	p.C272Y	1.000	pfam_ORC3	pfam_ORC3	-	no_errors	ORC3	HGNC	ENSG00000135336				84	0	0	72	15	17.2414
ORC3	0	genome.wustl.edu	37	6	88372743	88372743	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	88372743	88372743	A	T	SNP	ORC3	ENST00000257789	human	ensembl	74_37	+1	known	missense	c.1717	p.T573S	0.823	NULL	pfam_ORC3	-	no_errors	ORC3	HGNC	ENSG00000135336				71	0	0	73	6	7.59494
ORC3	0	genome.wustl.edu	37	6	88372813	88372813	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	88372813	88372813	C	T	SNP	ORC3	ENST00000257789	human	ensembl	74_37	+1	known	missense	c.1787	p.P596L	1.000	NULL	pfam_ORC3	-	no_errors	ORC3	HGNC	ENSG00000135336				75	0	0	79	12	13.1868
CNR1	0	genome.wustl.edu	37	6	88854116	88854116	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	88854116	88854116	G	A	SNP	CNR1	ENST00000369499	human	ensembl	74_37	-1	known	missense	c.878	p.A293V	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pirsf_Canbinoid_rcpt_1,pfscan_GPCR_Rhodpsn_7TM,prints_Cnbnoid_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pirsf_Canbinoid_rcpt_1,pfscan_GPCR_Rhodpsn_7TM,prints_Canbinoid_rcpt_1,prints_Cnbnoid_rcpt,prints_GPCR_Rhodpsn	-	no_errors	CNR1	HGNC	ENSG00000118432				57	0	0	48	9	15.7895
CNR1	0	genome.wustl.edu	37	6	88854156	88854156	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	88854156	88854156	T	A	SNP	CNR1	ENST00000369499	human	ensembl	74_37	-1	known	missense	c.838	p.I280F	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pirsf_Canbinoid_rcpt_1,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pirsf_Canbinoid_rcpt_1,pfscan_GPCR_Rhodpsn_7TM,prints_Canbinoid_rcpt_1,prints_Cnbnoid_rcpt,prints_GPCR_Rhodpsn	-	no_errors	CNR1	HGNC	ENSG00000118432				74	0	0	53	7	11.6667
PM20D2	0	genome.wustl.edu	37	6	89868083	89868083	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	89868083	89868083	C	A	SNP	PM20D2	ENST00000275072	human	ensembl	74_37	+1	known	missense	c.952	p.L318I	0.999	pfam_Peptidase_M20,pirsf_Pept_M20D_amidohydro_pred	pfam_Peptidase_M20_dimer,pfam_Peptidase_M20,superfamily_Peptidase_M20_dimer,pirsf_Pept_M20D_amidohydro_pred	-	no_errors	PM20D2	HGNC	ENSG00000146281				113	0	0	88	28	24.1379
MDN1	0	genome.wustl.edu	37	6	90363931	90363931	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	90363931	90363931	C	T	SNP	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	missense	c.15613	p.E5205K	0.675	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				166	0	0	119	27	18.4932
MDN1	0	genome.wustl.edu	37	6	90365627	90365627	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	90365627	90365627	G	A	SNP	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	missense	c.15346	p.R5116C	1.000	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				57	0	0	35	9	20.4545
MDN1	0	genome.wustl.edu	37	6	90372631	90372631	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	90372631	90372631	G	A	SNP	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	silent	c.14292	p.G4764	0.071	superfamily_ARM-type_fold,pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				164	0	0	148	30	16.8539
MDN1	0	genome.wustl.edu	37	6	90405417	90405417	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	90405417	90405417	G	A	SNP	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	silent	c.9678	p.S3226	1.000	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				62	0	0	56	8	12.5
MDN1	0	genome.wustl.edu	37	6	90420485	90420485	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	90420485	90420485	A	T	SNP	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	missense	c.7680	p.S2560R	1.000	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				53	0	0	37	18	32.7273
MDN1	0	genome.wustl.edu	37	6	90422950	90422950	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	90422950	90422950	G	A	SNP	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	nonsense	c.7135	p.R2379*	0.999	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				196	0	0	149	39	20.7447
MDN1	0	genome.wustl.edu	37	6	90433295	90433295	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	90433295	90433295	G	A	SNP	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	missense	c.5714	p.A1905V	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase,pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				37	0	0	40	10	20
MDN1	0	genome.wustl.edu	37	6	90499580	90499580	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	90499580	90499580	C	T	SNP	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	nonsense	c.1149	p.W383*	1.000	pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				68	0	0	60	5	7.69231
CASP8AP2	0	genome.wustl.edu	37	6	90572093	90572093	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	90572093	90572093	G	A	SNP	CASP8AP2	ENST00000237177	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.833	-	-	-	no_errors	CASP8AP2	HGNC	ENSG00000118412				315	0	0	261	39	13
BACH2	0	genome.wustl.edu	37	6	90718450	90718450	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	90718450	90718450	G	A	SNP	BACH2	ENST00000257749	human	ensembl	74_37	-1	known	silent	c.114	p.D38	0.994	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,pfam_bZIP,superfamily_BTB/POZ_fold,superfamily_TF_DNA-bd,smart_BTB/POZ-like,smart_bZIP,pfscan_BTB/POZ-like,pfscan_bZIP	-	no_errors	BACH2	HGNC	ENSG00000112182				95	0	0	87	23	20.9091
UFL1	0	genome.wustl.edu	37	6	96984150	96984150	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	96984150	96984150	G	A	SNP	UFL1	ENST00000369278	human	ensembl	74_37	+1	known	missense	c.686	p.R229H	1.000	pfam_E3_UFM1_ligase_1	pfam_E3_UFM1_ligase_1	-	no_errors	UFL1	HGNC	ENSG00000014123				159	0	0	142	17	10.6918
KLHL32	0	genome.wustl.edu	37	6	97562260	97562260	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	97562260	97562260	G	A	SNP	KLHL32	ENST00000369261	human	ensembl	74_37	+1	known	missense	c.1229	p.R410H	1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL32	HGNC	ENSG00000186231				45	0	0	45	10	18.1818
POU3F2	0	genome.wustl.edu	37	6	99283807	99283807	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	99283807	99283807	G	A	SNP	POU3F2	ENST00000328345	human	ensembl	74_37	+1	known	missense	c.1058	p.R353H	1.000	pirsf_Transcription_factor_POU,superfamily_Homeodomain-like,pfscan_Homeobox_dom,prints_POU	pirsf_Transcription_factor_POU,pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU	-	no_errors	POU3F2	HGNC	ENSG00000184486				80	0	0	58	4	6.45161
POU3F2	0	genome.wustl.edu	37	6	99283841	99283841	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	99283841	99283841	C	T	SNP	POU3F2	ENST00000328345	human	ensembl	74_37	+1	known	silent	c.1092	p.S364	1.000	pirsf_Transcription_factor_POU,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_POU	pirsf_Transcription_factor_POU,pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU	-	no_errors	POU3F2	HGNC	ENSG00000184486				59	0	0	39	7	15.2174
OFCC1	0	genome.wustl.edu	37	6	9933039	9933039	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	9933039	9933039	G	C	SNP	OFCC1	ENST00000316020	human	ensembl	74_37	-1	known	missense	c.424	p.Q142E	0.988	NULL	NULL	-	no_errors	OFCC1	HGNC	ENSG00000181355				145	0	0	125	37	22.8395
PNISR	0	genome.wustl.edu	37	6	99849276	99849276	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	99849276	99849276	T	C	SNP	PNISR	ENST00000369239	human	ensembl	74_37	-1	known	missense	c.1558	p.S520G	0.997	NULL	NULL	-	no_errors	PNISR	HGNC	ENSG00000132424				47	0	0	45	4	8.16327
PNISR	0	genome.wustl.edu	37	6	99855980	99855980	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	99855980	99855980	G	A	SNP	PNISR	ENST00000369239	human	ensembl	74_37	-1	known	missense	c.841	p.R281C	1.000	NULL	NULL	-	no_errors	PNISR	HGNC	ENSG00000132424				103	0	0	82	21	20.3883
PNISR	0	genome.wustl.edu	37	6	99856111	99856111	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	99856111	99856111	C	T	SNP	PNISR	ENST00000369239	human	ensembl	74_37	-1	known	missense	c.710	p.R237H	1.000	NULL	NULL	-	no_errors	PNISR	HGNC	ENSG00000132424				109	0	0	111	18	13.9535
GNB2	0	genome.wustl.edu	37	7	100275127	100275127	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	100275127	100275127	G	A	SNP	GNB2	ENST00000303210	human	ensembl	74_37	+1	known	missense	c.274	p.A92T	1.000	pirsf_Guanine_nucleotide-bd_bsu,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_Gprotein_B,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pirsf_Guanine_nucleotide-bd_bsu,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_Gprotein_B,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	GNB2	HGNC	ENSG00000172354				45	0	0	32	11	25.5814
GNB2	0	genome.wustl.edu	37	7	100275393	100275393	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	100275393	100275393	G	A	SNP	GNB2	ENST00000303210	human	ensembl	74_37	+1	known	missense	c.449	p.R150H	1.000	pirsf_Guanine_nucleotide-bd_bsu,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pirsf_Guanine_nucleotide-bd_bsu,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_Gprotein_B,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	GNB2	HGNC	ENSG00000172354				61	0	0	36	7	16.2791
ZAN	0	genome.wustl.edu	37	7	100389759	100389759	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	100389759	100389759	G	A	SNP	ZAN	ENST00000546213	human	ensembl	74_37	+1	known	missense	c.2948	p.S983N	0.982	NULL	pfam_VWF_type-D,pfam_TIL_dom,pfam_Unchr_dom_Cys-rich,pfam_EG-like_dom,superfamily_TIL_dom,smart_EG-like_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,pfscan_EG-like_dom	-	no_errors	ZAN	HGNC	ENSG00000146839				18	0	0	14	4	22.2222
EPHB4	0	genome.wustl.edu	37	7	100421410	100421410	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	100421410	100421410	C	T	SNP	EPHB4	ENST00000358173	human	ensembl	74_37	-1	known	silent	c.267	p.T89	0.073	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ephrin_rcpt_lig-bd_dom,superfamily_Galactose-bd-like,smart_Ephrin_rcpt_lig-bd_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHB4	HGNC	ENSG00000196411				21	0	0	15	13	46.4286
SLC12A9	0	genome.wustl.edu	37	7	100459098	100459098	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	100459098	100459098	C	T	SNP	SLC12A9	ENST00000354161	human	ensembl	74_37	+1	known	silent	c.1428	p.G476	0.786	pfam_AA-permease/SLC12A_dom	pfam_AA-permease/SLC12A_dom	-	no_errors	SLC12A9	HGNC	ENSG00000146828				84	0	0	40	28	41.1765
SLC12A9	0	genome.wustl.edu	37	7	100460410	100460410	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	100460410	100460410	C	T	SNP	SLC12A9	ENST00000354161	human	ensembl	74_37	+1	known	missense	c.1819	p.R607C	1.000	NULL	pfam_AA-permease/SLC12A_dom	-	no_errors	SLC12A9	HGNC	ENSG00000146828				98	0	0	67	13	16.25
SRRT	0	genome.wustl.edu	37	7	100485018	100485018	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	100485018	100485018	G	A	SNP	SRRT	ENST00000388793	human	ensembl	74_37	+1	known	missense	c.2050	p.A684T	1.000	pfam_Arsenite-R_2	pfam_Arsenite-R_2,pfam_DUF3546	-	no_errors	SRRT	HGNC	ENSG00000087087				103	1	0.961538	59	22	27.1605
ACHE	0	genome.wustl.edu	37	7	100491577	100491577	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	100491577	100491577	C	T	SNP	ACHE	ENST00000302913	human	ensembl	74_37	-1	known	missense	c.277	p.A93T	0.998	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Cholinesterase	-	no_errors	ACHE	HGNC	ENSG00000087085				73	0	0	63	15	19.2308
MUC12	0	genome.wustl.edu	37	7	100648525	100648525	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	100648525	100648525	C	T	SNP	MUC12	ENST00000536621	human	ensembl	74_37	+1	known	missense	c.14681	p.A4894V	0.001	NULL	pfam_SEA_dom	-	no_errors	MUC12	HGNC	ENSG00000205277				10	0	0	10	3	23.0769
MUC17	0	genome.wustl.edu	37	7	100675395	100675395	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	100675395	100675395	C	T	SNP	MUC17	ENST00000306151	human	ensembl	74_37	+1	known	missense	c.698	p.A233V	0.002	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	MUC17	HGNC	ENSG00000169876				267	0	0	225	22	8.90688
MUC17	0	genome.wustl.edu	37	7	100676841	100676841	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	100676841	100676841	C	T	SNP	MUC17	ENST00000306151	human	ensembl	74_37	+1	known	missense	c.2144	p.T715I	0.011	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	MUC17	HGNC	ENSG00000169876				437	0	0	393	45	10.274
MUC17	0	genome.wustl.edu	37	7	100681920	100681920	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	100681920	100681920	C	T	SNP	MUC17	ENST00000306151	human	ensembl	74_37	+1	known	missense	c.7223	p.P2408L	0.001	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	MUC17	HGNC	ENSG00000169876				451	1	0.221239	446	48	9.7166
MUC17	0	genome.wustl.edu	37	7	100695101	100695101	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	100695101	100695101	G	A	SNP	MUC17	ENST00000306151	human	ensembl	74_37	+1	known	missense	c.12961	p.A4321T	0.012	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	MUC17	HGNC	ENSG00000169876				109	0	0	80	28	25.9259
CUX1	0	genome.wustl.edu	37	7	101559425	101559425	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	101559425	101559425	G	A	SNP	CUX1	ENST00000360264	human	ensembl	74_37	+1	known	missense	c.94	p.A32T	1.000	NULL	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_LemA-like_dom,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	CUX1	HGNC	ENSG00000257923				185	0	0	134	51	27.5676
CUX1	0	genome.wustl.edu	37	7	101917564	101917564	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	101917564	101917564	C	T	SNP	CUX1	ENST00000292538	human	ensembl	74_37	+1	known	missense	c.1433	p.A478V	1.000	pfam_CASP_C	pfam_CASP_C,superfamily_LemA-like_dom	-	no_errors	CUX1	HGNC	ENSG00000257923				86	0	0	56	21	27.2727
LRWD1	0	genome.wustl.edu	37	7	102106665	102106665	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	102106665	102106665	C	T	SNP	LRWD1	ENST00000292616	human	ensembl	74_37	+1	known	missense	c.380	p.A127V	0.005	NULL	pfam_WD40_repeat,pfam_Leu-rich_rpt,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LRWD1	HGNC	ENSG00000161036				92	0	0	74	25	25.2525
NFE4	0	genome.wustl.edu	37	7	102613976	102613976	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	102613976	102613976	G	A	SNP	NFE4	ENST00000420058	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.045	-	-	-	no_errors	NFE4	HGNC	ENSG00000230257				37	0	0	27	10	27.027
SLC26A5	0	genome.wustl.edu	37	7	103030938	103030938	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	103030938	103030938	C	A	SNP	SLC26A5	ENST00000306312	human	ensembl	74_37	-1	known	missense	c.1249	p.A417S	1.000	pfam_Sulph_transpt,tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A5	HGNC	ENSG00000170615				166	0	0	118	12	9.23077
RELN	0	genome.wustl.edu	37	7	103629618	103629618	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	103629618	103629618	C	T	SNP	RELN	ENST00000424685	human	ensembl	74_37	-1	known	silent	c.186	p.A62	0.979	pfam_Reeler_dom,pfscan_Reeler_dom	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Sialidases,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056				74	0	0	41	14	25.4545
KMT2E	0	genome.wustl.edu	37	7	104747108	104747108	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	104747108	104747108	G	A	SNP	KMT2E	ENST00000257745	human	ensembl	74_37	+1	known	silent	c.2736	p.T912	1.000	NULL	pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_PHD-finger	-	no_errors	KMT2E	HGNC	ENSG00000005483				207	1	0.480769	153	47	23.5
KMT2E	0	genome.wustl.edu	37	7	104753201	104753201	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	104753201	104753201	G	A	SNP	KMT2E	ENST00000257745	human	ensembl	74_37	+1	known	silent	c.4998	p.S1666	0.313	NULL	pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_PHD-finger	-	no_errors	KMT2E	HGNC	ENSG00000005483				67	0	0	56	6	9.67742
SRPK2	0	genome.wustl.edu	37	7	104783607	104783607	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	104783607	104783607	G	A	SNP	SRPK2	ENST00000393651	human	ensembl	74_37	-1	known	silent	c.984	p.G328	0.001	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	SRPK2	HGNC	ENSG00000135250				109	0	0	107	16	13.0081
SRPK2	0	genome.wustl.edu	37	7	104807824	104807824	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	104807824	104807824	G	A	SNP	SRPK2	ENST00000393651	human	ensembl	74_37	-1	known	missense	c.514	p.H172Y	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	SRPK2	HGNC	ENSG00000135250				96	0	0	84	7	7.69231
CDHR3	0	genome.wustl.edu	37	7	105662698	105662698	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	105662698	105662698	G	A	SNP	CDHR3	ENST00000317716	human	ensembl	74_37	+1	known	missense	c.1880	p.R627H	0.479	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDHR3	HGNC	ENSG00000128536				161	0	0	133	8	5.67376
HBP1	0	genome.wustl.edu	37	7	106827054	106827054	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	106827054	106827054	G	A	SNP	HBP1	ENST00000222574	human	ensembl	74_37	+1	known	nonsense	c.693	p.W231*	1.000	pfam_Ataxin-1_HBP1,superfamily_Ataxin-1_HBP1,smart_Ataxin_AXH_dom,pfscan_Ataxin-1_HBP1	pfam_Ataxin-1_HBP1,pfam_HMG_box_dom,superfamily_Ataxin-1_HBP1,superfamily_HMG_box_dom,smart_Ataxin_AXH_dom,smart_HMG_box_dom,pfscan_Ataxin-1_HBP1,pfscan_HMG_box_dom	-	no_errors	HBP1	HGNC	ENSG00000105856				104	1	0.952381	89	22	19.8198
GPR22	0	genome.wustl.edu	37	7	107115658	107115658	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	107115658	107115658	C	T	SNP	GPR22	ENST00000304402	human	ensembl	74_37	+1	known	nonsense	c.1153	p.R385*	0.993	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR22	HGNC	ENSG00000172209				94	0	0	60	24	28.5714
SLC26A4	0	genome.wustl.edu	37	7	107323732	107323732	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	107323732	107323732	C	T	SNP	SLC26A4	ENST00000265715	human	ensembl	74_37	+1	known	missense	c.851	p.A284V	1.000	pfam_Sulph_transpt,tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A4	HGNC	ENSG00000091137				95	0	0	70	21	23.0769
SLC26A4	0	genome.wustl.edu	37	7	107334884	107334884	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	107334884	107334884	G	A	SNP	SLC26A4	ENST00000265715	human	ensembl	74_37	+1	known	missense	c.1300	p.A434T	0.998	pfam_Sulph_transpt,tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A4	HGNC	ENSG00000091137				66	0	0	56	10	15.1515
LAMB4	0	genome.wustl.edu	37	7	107671311	107671311	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	107671311	107671311	G	A	SNP	LAMB4	ENST00000205386	human	ensembl	74_37	-1	known	silent	c.4932	p.H1644	0.000	NULL	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB4	HGNC	ENSG00000091128				136	0	0	132	13	8.96552
DOCK4	0	genome.wustl.edu	37	7	111407090	111407090	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	111407090	111407090	G	A	SNP	DOCK4	ENST00000428084	human	ensembl	74_37	-1	known	missense	c.3913	p.R1305W	0.990	NULL	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK4	HGNC	ENSG00000128512				146	0	0	100	41	29.078
DOCK4	0	genome.wustl.edu	37	7	111409619	111409619	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	111409619	111409619	T	C	SNP	DOCK4	ENST00000428084	human	ensembl	74_37	-1	known	missense	c.3794	p.H1265R	1.000	NULL	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK4	HGNC	ENSG00000128512				45	0	0	34	6	15
DOCK4	0	genome.wustl.edu	37	7	111629103	111629103	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	111629103	111629103	C	T	SNP	DOCK4	ENST00000428084	human	ensembl	74_37	-1	known	missense	c.431	p.R144H	1.000	NULL	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK4	HGNC	ENSG00000128512				28	0	0	23	5	17.8571
DOCK4	0	genome.wustl.edu	37	7	111629121	111629121	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	111629121	111629121	C	T	SNP	DOCK4	ENST00000428084	human	ensembl	74_37	-1	known	missense	c.413	p.R138Q	0.999	NULL	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK4	HGNC	ENSG00000128512				37	0	0	26	11	29.7297
TMEM168	0	genome.wustl.edu	37	7	112424684	112424684	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	112424684	112424684	A	G	SNP	TMEM168	ENST00000312814	human	ensembl	74_37	-1	known	missense	c.197	p.V66A	0.999	NULL	superfamily_ConA-like_lec_gl_sf	-	no_errors	TMEM168	HGNC	ENSG00000146802				80	0	0	69	4	5.47945
GPR85	0	genome.wustl.edu	37	7	112724294	112724294	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	112724294	112724294	G	A	SNP	GPR85	ENST00000297146	human	ensembl	74_37	-1	known	silent	c.483	p.G161	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR85	HGNC	ENSG00000164604				96	0	0	84	7	7.69231
PPP1R3A	0	genome.wustl.edu	37	7	113558291	113558291	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	113558291	113558291	C	T	SNP	PPP1R3A	ENST00000284601	human	ensembl	74_37	-1	known	missense	c.761	p.G254D	1.000	NULL	pfam_CBM_21,pfscan_CBM_21	-	no_errors	PPP1R3A	HGNC	ENSG00000154415				140	0	0	122	26	17.5676
PPP1R3A	0	genome.wustl.edu	37	7	113558550	113558550	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	113558550	113558550	T	A	SNP	PPP1R3A	ENST00000284601	human	ensembl	74_37	-1	known	missense	c.502	p.T168S	1.000	pfam_CBM_21,pfscan_CBM_21	pfam_CBM_21,pfscan_CBM_21	-	no_errors	PPP1R3A	HGNC	ENSG00000154415				67	0	0	53	18	25.3521
THSD7A	0	genome.wustl.edu	37	7	11464343	11464343	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	11464343	11464343	G	A	SNP	THSD7A	ENST00000423059	human	ensembl	74_37	-1	known	silent	c.3363	p.G1121	0.632	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7A	HGNC	ENSG00000005108				256	0	0	214	43	16.7315
MET	0	genome.wustl.edu	37	7	116340097	116340097	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	116340097	116340097	C	T	SNP	MET	ENST00000318493	human	ensembl	74_37	+1	known	missense	c.959	p.A320V	1.000	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semap_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Kinase-like_dom,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Semap_dom,pfscan_Prot_kinase_dom	-	no_errors	MET	HGNC	ENSG00000105976				42	0	0	48	10	17.2414
MET	0	genome.wustl.edu	37	7	116340317	116340317	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	116340317	116340317	T	A	SNP	MET	ENST00000318493	human	ensembl	74_37	+1	known	missense	c.1179	p.N393K	0.997	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semap_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Kinase-like_dom,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Semap_dom,pfscan_Prot_kinase_dom	-	no_errors	MET	HGNC	ENSG00000105976				130	1	0.763359	120	12	9.09091
MET	0	genome.wustl.edu	37	7	116417481	116417481	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	116417481	116417481	A	G	SNP	MET	ENST00000318493	human	ensembl	74_37	+1	known	missense	c.3352	p.N1118D	0.587	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semap_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Kinase-like_dom,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Semap_dom,pfscan_Prot_kinase_dom	-	no_errors	MET	HGNC	ENSG00000105976				128	0	0	74	29	28.1553
CTTNBP2	0	genome.wustl.edu	37	7	117501313	117501313	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	117501313	117501313	C	T	SNP	CTTNBP2	ENST00000160373	human	ensembl	74_37	-1	known	missense	c.139	p.V47M	0.994	pfam_Cortactin-binding_p2_N	pfam_Cortactin-binding_p2_N,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	CTTNBP2	HGNC	ENSG00000077063				19	0	0	17	6	26.087
KCND2	0	genome.wustl.edu	37	7	119915461	119915461	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	119915461	119915461	C	T	SNP	KCND2	ENST00000331113	human	ensembl	74_37	+1	known	missense	c.775	p.R259C	1.000	pfam_Ion_trans_dom,prints_K_chnl	pfam_K_chnl_volt-dep_Kv4_C,pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_Shal-type,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv4,prints_K_chnl_volt-dep_Kv4.2,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCND2	HGNC	ENSG00000184408				62	0	0	48	20	29.4118
TMEM106B	0	genome.wustl.edu	37	7	12263863	12263863	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	12263863	12263863	T	C	SNP	TMEM106B	ENST00000396667	human	ensembl	74_37	+1	known	missense	c.293	p.V98A	1.000	pfam_DUF1356_TMEM106	pfam_DUF1356_TMEM106	-	no_errors	TMEM106B	HGNC	ENSG00000106460				235	0	0	226	14	5.83333
IQUB	0	genome.wustl.edu	37	7	123109382	123109382	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	123109382	123109382	C	T	SNP	IQUB	ENST00000324698	human	ensembl	74_37	-1	known	silent	c.1467	p.T489	0.991	NULL	pfam_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	-	no_errors	IQUB	HGNC	ENSG00000164675				86	0	0	77	21	21.4286
SPAM1	0	genome.wustl.edu	37	7	123593822	123593822	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	123593822	123593822	G	T	SNP	SPAM1	ENST00000340011	human	ensembl	74_37	+1	known	missense	c.198	p.E66D	0.000	pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase	pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase,prints_Hyaluronidase	-	no_errors	SPAM1	HGNC	ENSG00000106304				63	0	0	49	19	27.9412
POT1	0	genome.wustl.edu	37	7	124482994	124482994	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	124482994	124482994	C	T	SNP	POT1	ENST00000357628	human	ensembl	74_37	-1	known	missense	c.1030	p.E344K	1.000	NULL	pfam_Telomer_end-bd_POT1/Cdc13,superfamily_NA-bd_OB-fold,smart_Telomer_end-bd_POT1/Cdc13	-	no_errors	POT1	HGNC	ENSG00000128513				47	0	0	31	5	13.8889
GRM8	0	genome.wustl.edu	37	7	126173421	126173421	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	126173421	126173421	C	T	SNP	GRM8	ENST00000339582	human	ensembl	74_37	-1	known	missense	c.2015	p.R672H	1.000	pfam_GPCR_3_C,prints_GPCR_3,pfscan_GPCR_3_C	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_8,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4,pfscan_GPCR_3_C	-	no_errors	GRM8	HGNC	ENSG00000179603				95	0	0	84	8	8.69565
MIR592	0	genome.wustl.edu	37	7	126698210	126698210	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	126698210	126698210	G	A	SNP	MIR592	ENST00000384959	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR592	HGNC	ENSG00000207692				30	0	0	16	8	33.3333
GRM8	0	genome.wustl.edu	37	7	126883250	126883250	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	126883250	126883250	G	A	SNP	GRM8	ENST00000339582	human	ensembl	74_37	-1	known	silent	c.9	p.C3	1.000	prints_GPCR_3_mtglu_rcpt_8	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_8,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4,pfscan_GPCR_3_C	-	no_errors	GRM8	HGNC	ENSG00000179603				72	0	0	65	10	13.3333
GCC1	0	genome.wustl.edu	37	7	127222255	127222255	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	127222255	127222255	C	T	SNP	GCC1	ENST00000321407	human	ensembl	74_37	-1	known	missense	c.2141	p.S714N	1.000	superfamily_ARM-type_fold,pfscan_GRIP	pfam_GRIP,superfamily_ARM-type_fold,smart_GRIP,pfscan_GRIP	-	no_errors	GCC1	HGNC	ENSG00000179562				114	0	0	74	25	25.2525
FSCN3	0	genome.wustl.edu	37	7	127240362	127240362	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	127240362	127240362	C	T	SNP	FSCN3	ENST00000265825	human	ensembl	74_37	+1	known	missense	c.1406	p.A469V	1.000	superfamily_Actin_cross-linking	pfam_Fascin-domain,superfamily_Actin_cross-linking	-	no_errors	FSCN3	HGNC	ENSG00000106328				60	0	0	40	10	20
ARL4A	0	genome.wustl.edu	37	7	12727924	12727924	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	12727924	12727924	G	A	SNP	ARL4A	ENST00000356797	human	ensembl	74_37	+1	known	silent	c.45	p.L15	0.653	pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_MIRO-like,pfam_SRP_receptor_beta_su,pfam_EF_GTP-bd_dom,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,prints_Small_GTPase,prints_Small_GTPase_ARF/SAR,tigrfam_Small_GTP-bd_dom	-	no_errors	ARL4A	HGNC	ENSG00000122644				126	0	0	88	52	37.1429
ARL4A	0	genome.wustl.edu	37	7	12728427	12728427	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	12728427	12728427	A	G	SNP	ARL4A	ENST00000356797	human	ensembl	74_37	+1	known	missense	c.548	p.H183R	1.000	pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,smart_Small_GTPase_Ras	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_MIRO-like,pfam_SRP_receptor_beta_su,pfam_EF_GTP-bd_dom,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,prints_Small_GTPase,prints_Small_GTPase_ARF/SAR,tigrfam_Small_GTP-bd_dom	-	no_errors	ARL4A	HGNC	ENSG00000122644				94	0	0	85	31	26.7241
LRRC4	0	genome.wustl.edu	37	7	127669682	127669682	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	127669682	127669682	G	A	SNP	LRRC4	ENST00000249363	human	ensembl	74_37	-1	known	missense	c.1012	p.R338C	1.000	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRC4	HGNC	ENSG00000128594				29	0	0	27	10	27.027
RBM28	0	genome.wustl.edu	37	7	127964664	127964664	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	127964664	127964664	C	T	SNP	RBM28	ENST00000223073	human	ensembl	74_37	-1	known	silent	c.1287	p.T429	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM28	HGNC	ENSG00000106344				189	0	0	180	19	9.54774
FLNC	0	genome.wustl.edu	37	7	128482937	128482937	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	128482937	128482937	G	A	SNP	FLNC	ENST00000325888	human	ensembl	74_37	+1	known	missense	c.2479	p.D827N	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNC	HGNC	ENSG00000128591				27	0	0	36	4	10
FLNC	0	genome.wustl.edu	37	7	128486822	128486822	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	128486822	128486822	G	A	SNP	FLNC	ENST00000325888	human	ensembl	74_37	+1	known	missense	c.4151	p.G1384D	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNC	HGNC	ENSG00000128591				24	0	0	22	3	12
STRIP2	0	genome.wustl.edu	37	7	129122851	129122851	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	129122851	129122851	C	T	SNP	STRIP2	ENST00000249344	human	ensembl	74_37	+1	known	missense	c.2218	p.R740C	1.000	pfam_DUF3402	pfam_DUF3402,pfam_N1221	-	no_errors	STRIP2	HGNC	ENSG00000128578				62	0	0	54	7	11.4754
CPA1	0	genome.wustl.edu	37	7	130027747	130027747	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	130027747	130027747	G	A	SNP	CPA1	ENST00000011292	human	ensembl	74_37	+1	known	silent	c.1155	p.G385	0.972	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPA1	HGNC	ENSG00000091704				284	0	0	285	28	8.94569
MEST	0	genome.wustl.edu	37	7	130138010	130138010	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	130138010	130138010	G	A	SNP	MEST	ENST00000223215	human	ensembl	74_37	+1	known	missense	c.370	p.A124T	1.000	pfam_AB_hydrolase_1,pfam_DUF1057	pfam_AB_hydrolase_1,pfam_DUF1057,prints_Epox_hydrolase-like	-	no_errors	MEST	HGNC	ENSG00000106484				96	0	0	80	9	10.1124
PLXNA4	0	genome.wustl.edu	37	7	131829950	131829950	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	131829950	131829950	T	A	SNP	PLXNA4	ENST00000321063	human	ensembl	74_37	-1	known	missense	c.5153	p.D1718V	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA4	HGNC	ENSG00000221866				78	0	0	64	15	18.9873
PLXNA4	0	genome.wustl.edu	37	7	132174113	132174113	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	132174113	132174113	C	T	SNP	PLXNA4	ENST00000321063	human	ensembl	74_37	-1	known	missense	c.1309	p.A437T	0.997	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA4	HGNC	ENSG00000221866				59	0	0	56	4	6.66667
PLXNA4	0	genome.wustl.edu	37	7	132192896	132192896	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	132192896	132192896	G	A	SNP	PLXNA4	ENST00000321063	human	ensembl	74_37	-1	known	missense	c.557	p.A186V	1.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA4	HGNC	ENSG00000221866				124	0	0	91	31	25.4098
CALD1	0	genome.wustl.edu	37	7	134632408	134632408	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	134632408	134632408	C	T	SNP	CALD1	ENST00000361388	human	ensembl	74_37	+1	known	missense	c.995	p.A332V	0.997	pfam_Caldesmon_LSP	pfam_Caldesmon_LSP,prints_Caldesmon	-	no_errors	CALD1	HGNC	ENSG00000122786				19	0	0	11	6	35.2941
NUP205	0	genome.wustl.edu	37	7	135303205	135303205	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	135303205	135303205	C	T	SNP	NUP205	ENST00000285968	human	ensembl	74_37	+1	known	silent	c.3817	p.L1273	0.959	pfam_Nup186/Nup192/Nup205	pfam_Nup186/Nup192/Nup205	-	no_errors	NUP205	HGNC	ENSG00000155561				117	0	0	93	28	23.1405
NUP205	0	genome.wustl.edu	37	7	135304191	135304191	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	135304191	135304191	G	A	SNP	NUP205	ENST00000285968	human	ensembl	74_37	+1	known	silent	c.3984	p.A1328	0.240	pfam_Nup186/Nup192/Nup205	pfam_Nup186/Nup192/Nup205	-	no_errors	NUP205	HGNC	ENSG00000155561				136	0	0	111	23	17.1642
SLC13A4	0	genome.wustl.edu	37	7	135390380	135390380	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	135390380	135390380	C	T	SNP	SLC13A4	ENST00000354042	human	ensembl	74_37	-1	known	missense	c.557	p.S186N	0.021	pfam_Na/sul_symport	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom,pfam_DctM	-	no_errors	SLC13A4	HGNC	ENSG00000164707				122	0	0	82	31	27.4336
MIR490	0	genome.wustl.edu	37	7	136848959	136848959	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	136848959	136848959	G	A	SNP	MIR490	ENST00000425981	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	hsa-mir-490	miRBase	ENSG00000234352				73	0	0	52	16	23.5294
TMEM213	0	genome.wustl.edu	37	7	138487646	138487646	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	138487646	138487646	C	T	SNP	TMEM213	ENST00000422794	human	ensembl	74_37	+1	known	silent	c.306	p.N102	0.000	NULL	NULL	-	no_errors	TMEM213	HGNC	ENSG00000214128				28	0	0	26	12	31.5789
KIAA1549	0	genome.wustl.edu	37	7	138593813	138593813	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	138593813	138593813	C	T	SNP	KIAA1549	ENST00000422774	human	ensembl	74_37	-1	known	missense	c.3200	p.R1067H	0.995	NULL	NULL	-	no_errors	KIAA1549	HGNC	ENSG00000122778				25	0	0	37	4	9.7561
KIAA1549	0	genome.wustl.edu	37	7	138604036	138604036	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	138604036	138604036	C	T	SNP	KIAA1549	ENST00000422774	human	ensembl	74_37	-1	known	silent	c.336	p.P112	0.056	NULL	NULL	-	no_errors	KIAA1549	HGNC	ENSG00000122778				103	0	0	54	26	32.5
UBN2	0	genome.wustl.edu	37	7	138978728	138978728	+	Splice_Site	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	138978728	138978728	G	A	SNP	UBN2	ENST00000473989	human	ensembl	74_37	+1	known	splice_site	c.3994+1	e17+1	1.000	-	-	-	no_errors	UBN2	HGNC	ENSG00000157741				38	0	0	27	16	37.2093
ETV1	0	genome.wustl.edu	37	7	13971341	13971341	+	Silent	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	13971341	13971341	G	T	SNP	ETV1	ENST00000405218	human	ensembl	74_37	-1	known	silent	c.588	p.S196	0.990	pfam_ETS_PEA3_N	pfam_ETS_PEA3_N,pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ETV1	HGNC	ENSG00000006468				92	0	0	52	6	10.3448
TAS2R3	0	genome.wustl.edu	37	7	141464395	141464395	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	141464395	141464395	C	A	SNP	TAS2R3	ENST00000247879	human	ensembl	74_37	+1	known	missense	c.437	p.A146E	0.009	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R3	HGNC	ENSG00000127362				110	0	0	71	36	33.6449
MGAM	0	genome.wustl.edu	37	7	141759709	141759709	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	141759709	141759709	C	T	SNP	MGAM	ENST00000549489	human	ensembl	74_37	+1	known	silent	c.4002	p.G1334	0.001	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335				24	0	0	15	4	21.0526
MGAM	0	genome.wustl.edu	37	7	141796213	141796213	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	141796213	141796213	C	T	SNP	MGAM	ENST00000549489	human	ensembl	74_37	+1	known	missense	c.5002	p.R1668C	0.000	pfam_Glyco_hydro_31	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335				46	0	0	42	10	19.2308
MGAM	0	genome.wustl.edu	37	7	141797431	141797431	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	141797431	141797431	C	T	SNP	MGAM	ENST00000549489	human	ensembl	74_37	+1	known	silent	c.5043	p.R1681	1.000	pfam_Glyco_hydro_31	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335				61	0	0	34	7	17.0732
TRPV5	0	genome.wustl.edu	37	7	142609695	142609695	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	142609695	142609695	T	G	SNP	TRPV5	ENST00000265310	human	ensembl	74_37	-1	known	missense	c.1741	p.T581P	1.000	tigrfam_TRP_channel	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV5/TRPV6,prints_TRPV5,prints_Ankyrin_rpt,tigrfam_TRP_channel	-	no_errors	TRPV5	HGNC	ENSG00000127412				78	0	0	70	7	9.09091
GSTK1	0	genome.wustl.edu	37	7	142962190	142962190	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	142962190	142962190	G	C	SNP	GSTK1	ENST00000479303	human	ensembl	74_37	+1	known	missense	c.389	p.S130T	0.598	NULL	pfam_DSBA-like_thioredoxin_dom,superfamily_Thioredoxin-like_fold	-	no_errors	GSTK1	HGNC	ENSG00000197448				41	0	0	31	6	16.2162
ZYX	0	genome.wustl.edu	37	7	143087068	143087068	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	143087068	143087068	G	A	SNP	ZYX	ENST00000322764	human	ensembl	74_37	+1	known	missense	c.1612	p.E538K	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	ZYX	HGNC	ENSG00000159840				63	0	0	50	20	28.5714
FAM115A	0	genome.wustl.edu	37	7	143573264	143573264	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	143573264	143573264	G	A	SNP	FAM115A	ENST00000479870	human	ensembl	74_37	-1	known	silent	c.438	p.G146	0.643	NULL	NULL	-	no_errors	FAM115A	HGNC	ENSG00000198420				69	0	0	65	6	8.4507
OR2F2	0	genome.wustl.edu	37	7	143632824	143632824	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	143632824	143632824	C	A	SNP	OR2F2	ENST00000408955	human	ensembl	74_37	+1	known	missense	c.499	p.P167T	0.003	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2F2	HGNC	ENSG00000221910				72	0	0	48	25	34.2466
OR2F1	0	genome.wustl.edu	37	7	143657808	143657808	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	143657808	143657808	G	A	SNP	OR2F1	ENST00000392899	human	ensembl	74_37	+1	known	missense	c.745	p.A249T	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2F1	HGNC	ENSG00000213215				111	0	0	74	25	25.2525
DGKB	0	genome.wustl.edu	37	7	14653016	14653016	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	14653016	14653016	T	A	SNP	DGKB	ENST00000258767	human	ensembl	74_37	-1	known	missense	c.1310	p.H437L	1.000	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_EF_hand_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_EF_hand_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKB	HGNC	ENSG00000136267				14	0	0	12	3	20
CNTNAP2	0	genome.wustl.edu	37	7	147336252	147336252	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	147336252	147336252	T	C	SNP	CNTNAP2	ENST00000361727	human	ensembl	74_37	+1	known	missense	c.1952	p.V651A	0.785	NULL	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,pfam_EG-like_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP2	HGNC	ENSG00000174469				101	0	0	89	20	18.3486
DGKB	0	genome.wustl.edu	37	7	14758253	14758253	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	14758253	14758253	G	A	SNP	DGKB	ENST00000258767	human	ensembl	74_37	-1	known	missense	c.380	p.T127M	0.000	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_EF_hand_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_EF_hand_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKB	HGNC	ENSG00000136267				73	0	0	49	23	31.9444
CUL1	0	genome.wustl.edu	37	7	148456729	148456729	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	148456729	148456729	C	T	SNP	CUL1	ENST00000325222	human	ensembl	74_37	+1	known	silent	c.624	p.Y208	0.965	pfam_Cullin_N,superfamily_Cullin_repeat-like_dom	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL1	HGNC	ENSG00000055130				62	0	0	36	15	29.4118
CUL1	0	genome.wustl.edu	37	7	148496426	148496426	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	148496426	148496426	C	T	SNP	CUL1	ENST00000325222	human	ensembl	74_37	+1	known	silent	c.2196	p.G732	0.839	pfam_Cullin_neddylation_domain,smart_Cullin_neddylation_domain	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL1	HGNC	ENSG00000055130				63	0	0	61	5	7.57576
EZH2	0	genome.wustl.edu	37	7	148544339	148544339	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	148544339	148544339	G	A	SNP	EZH2	ENST00000320356	human	ensembl	74_37	-1	known	missense	c.52	p.R18C	1.000	NULL	pfam_SET_dom,pfam_EZH2_WD-Binding,superfamily_Homeodomain-like,smart_SANT/Myb,smart_SET_dom,pfscan_SET_dom	-	no_errors	EZH2	HGNC	ENSG00000106462				261	0	0	206	21	9.2511
ZNF783	0	genome.wustl.edu	37	7	148979250	148979250	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	148979250	148979250	G	A	SNP	ZNF783	ENST00000434415	human	ensembl	74_37	+1	known	missense	c.1457	p.R486H	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_DUF3669_Znf,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	ZNF783	HGNC	ENSG00000204946				29	0	0	12	4	25
ZNF783	0	genome.wustl.edu	37	7	148979342	148979342	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	148979342	148979342	G	A	SNP	ZNF783	ENST00000434415	human	ensembl	74_37	+1	known	missense	c.1549	p.A517T	0.582	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_DUF3669_Znf,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	ZNF783	HGNC	ENSG00000204946				11	0	0	7	3	30
ZNF767	0	genome.wustl.edu	37	7	149317123	149317123	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	149317123	149317123	C	T	SNP	ZNF767	ENST00000463567	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.994	-	-	-	no_errors	ZNF767	HGNC	ENSG00000133624				23	0	0	22	4	15.3846
ZBED6CL	0	genome.wustl.edu	37	7	150027622	150027622	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	150027622	150027622	C	T	SNP	ZBED6CL	ENST00000343855	human	ensembl	74_37	+1	known	silent	c.129	p.G43	0.000	NULL	NULL	-	no_errors	ZBED6CL	HGNC	ENSG00000188707				81	0	0	45	10	18.1818
REPIN1	0	genome.wustl.edu	37	7	150069158	150069158	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	150069158	150069158	G	T	SNP	REPIN1	ENST00000489432	human	ensembl	74_37	+1	known	missense	c.999	p.K333N	0.880	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	REPIN1	HGNC	ENSG00000214022				27	0	0	17	10	37.037
ZNF775	0	genome.wustl.edu	37	7	150094498	150094498	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	150094498	150094498	C	T	SNP	ZNF775	ENST00000329630	human	ensembl	74_37	+1	known	missense	c.929	p.A310V	0.745	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF775	HGNC	ENSG00000196456				11	0	0	9	4	30.7692
KCNH2	0	genome.wustl.edu	37	7	150648773	150648773	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	150648773	150648773	C	T	SNP	KCNH2	ENST00000262186	human	ensembl	74_37	-1	known	missense	c.1708	p.A570T	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_cNMP-bd_dom,pfam_PAS_fold,pfam_PAS_fold_3,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH2	HGNC	ENSG00000055118				22	0	0	15	5	25
ABCF2	0	genome.wustl.edu	37	7	150912693	150912693	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	150912693	150912693	T	A	SNP	ABCF2	ENST00000222388	human	ensembl	74_37	-1	known	missense	c.1527	p.Q509H	1.000	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCF2	HGNC	ENSG00000033050				261	0	0	204	71	25.8182
CHPF2	0	genome.wustl.edu	37	7	150932242	150932242	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	150932242	150932242	G	A	SNP	CHPF2	ENST00000035307	human	ensembl	74_37	+1	known	silent	c.372	p.V124	1.000	NULL	pfam_Chond_GalNAc,pfam_Fringe-like	-	no_errors	CHPF2	HGNC	ENSG00000033100				45	0	0	31	9	22.5
ENSG00000272661	0	genome.wustl.edu	37	7	150937502	150937502	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	150937502	150937502	C	T	SNP	ENSG00000272661	ENST00000607902	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	RP4-548D19.3	Clone_based_vega_gene	ENSG00000272661				27	0	0	33	6	15.3846
KMT2C	0	genome.wustl.edu	37	7	151836295	151836295	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	151836295	151836295	G	A	SNP	KMT2C	ENST00000355193	human	ensembl	74_37	-1	known	missense	c.14681	p.A4894V	0.991	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2C	HGNC	ENSG00000055609				73	0	0	33	12	26.6667
KMT2C	0	genome.wustl.edu	37	7	151836322	151836322	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	151836322	151836322	C	T	SNP	KMT2C	ENST00000355193	human	ensembl	74_37	-1	known	missense	c.14654	p.R4885H	1.000	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2C	HGNC	ENSG00000055609				74	0	0	53	5	8.62069
KMT2C	0	genome.wustl.edu	37	7	151873336	151873336	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	151873336	151873336	G	A	SNP	KMT2C	ENST00000355193	human	ensembl	74_37	-1	known	nonsense	c.9202	p.Q3068*	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2C	HGNC	ENSG00000055609				160	0	0	139	8	5.44218
KMT2C	0	genome.wustl.edu	37	7	151878430	151878430	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	151878430	151878430	T	C	SNP	KMT2C	ENST00000355193	human	ensembl	74_37	-1	known	missense	c.6515	p.D2172G	0.981	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2C	HGNC	ENSG00000055609				100	0	0	81	15	15.625
KMT2C	0	genome.wustl.edu	37	7	151878749	151878749	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	151878749	151878749	G	A	SNP	KMT2C	ENST00000355193	human	ensembl	74_37	-1	known	nonsense	c.6196	p.R2066*	0.998	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2C	HGNC	ENSG00000055609				80	0	0	37	18	32.7273
AGMO	0	genome.wustl.edu	37	7	15240962	15240962	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	15240962	15240962	G	A	SNP	AGMO	ENST00000342526	human	ensembl	74_37	-1	known	missense	c.1286	p.A429V	0.064	NULL	pfam_Fatty_acid_hydroxylase	-	no_errors	AGMO	HGNC	ENSG00000187546				60	0	0	47	17	26.5625
INTS1	0	genome.wustl.edu	37	7	1538054	1538054	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	1538054	1538054	C	T	SNP	INTS1	ENST00000389470	human	ensembl	74_37	-1	known	silent	c.1803	p.A601	0.084	NULL	pfam_DUF3677,superfamily_ARM-type_fold	-	no_errors	INTS1	HGNC	ENSG00000164880				20	0	0	18	4	18.1818
DPP6	0	genome.wustl.edu	37	7	154561150	154561150	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	154561150	154561150	G	A	SNP	DPP6	ENST00000377770	human	ensembl	74_37	+1	known	missense	c.907	p.A303T	0.994	pfam_Peptidase_S9B	pfam_Peptidase_S9B,pfam_Peptidase_S9,pfam_PD40	-	no_errors	DPP6	HGNC	ENSG00000130226				80	0	0	39	13	25
PTPRN2	0	genome.wustl.edu	37	7	157369425	157369425	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	157369425	157369425	C	T	SNP	PTPRN2	ENST00000404321	human	ensembl	74_37	-1	known	missense	c.2732	p.R911K	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Receptor_IA-2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRN2	HGNC	ENSG00000155093				13	0	0	11	4	26.6667
MIR595	0	genome.wustl.edu	37	7	158325474	158325474	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	158325474	158325474	C	T	SNP	MIR595	ENST00000384905	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MIR595	HGNC	ENSG00000207637				140	0	0	104	18	14.7541
PTPRN2	0	genome.wustl.edu	37	7	158334185	158334185	+	Silent	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	158334185	158334185	A	G	SNP	PTPRN2	ENST00000404321	human	ensembl	74_37	-1	known	silent	c.114	p.G38	0.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Receptor_IA-2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRN2	HGNC	ENSG00000155093				115	0	0	77	24	23.7624
FERD3L	0	genome.wustl.edu	37	7	19184742	19184742	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	19184742	19184742	G	A	SNP	FERD3L	ENST00000275461	human	ensembl	74_37	-1	known	missense	c.244	p.R82C	0.843	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	FERD3L	HGNC	ENSG00000146618				27	0	0	19	9	32.1429
MAD1L1	0	genome.wustl.edu	37	7	1997289	1997289	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	1997289	1997289	G	A	SNP	MAD1L1	ENST00000265854	human	ensembl	74_37	-1	known	missense	c.1571	p.A524V	0.068	pfam_Mad1	pfam_Mad1	-	no_errors	MAD1L1	HGNC	ENSG00000002822				48	0	0	33	9	21.4286
DNAH11	0	genome.wustl.edu	37	7	21627789	21627789	+	Silent	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	21627789	21627789	T	C	SNP	DNAH11	ENST00000328843	human	ensembl	74_37	+1	known	silent	c.1818	p.C606	1.000	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877				51	0	0	63	15	19.2308
CDCA7L	0	genome.wustl.edu	37	7	21943869	21943869	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	21943869	21943869	C	T	SNP	CDCA7L	ENST00000406877	human	ensembl	74_37	-1	known	silent	c.1056	p.T352	0.009	pfam_Znf-4CXXC_R1	pfam_Znf-4CXXC_R1	-	no_errors	CDCA7L	HGNC	ENSG00000164649				53	0	0	34	12	26.087
FAM221A	0	genome.wustl.edu	37	7	23731194	23731194	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	23731194	23731194	C	T	SNP	FAM221A	ENST00000344962	human	ensembl	74_37	+1	known	missense	c.616	p.R206W	1.000	NULL	NULL	-	no_errors	FAM221A	HGNC	ENSG00000188732				95	0	0	95	9	8.65385
DFNA5	0	genome.wustl.edu	37	7	24789387	24789387	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	24789387	24789387	C	T	SNP	DFNA5	ENST00000342947	human	ensembl	74_37	-1	known	missense	c.7	p.A3T	1.000	pfam_Gasdermin	pfam_Gasdermin	-	no_errors	DFNA5	HGNC	ENSG00000105928				120	0	0	107	8	6.95652
OSBPL3	0	genome.wustl.edu	37	7	24839866	24839866	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	24839866	24839866	C	T	SNP	OSBPL3	ENST00000313367	human	ensembl	74_37	-1	known	missense	c.2600	p.G867D	0.998	pfam_Oxysterol-bd	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL3	HGNC	ENSG00000070882				38	0	0	27	7	20.5882
OSBPL3	0	genome.wustl.edu	37	7	24903211	24903211	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	24903211	24903211	C	T	SNP	OSBPL3	ENST00000313367	human	ensembl	74_37	-1	known	silent	c.681	p.A227	0.994	NULL	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL3	HGNC	ENSG00000070882				102	0	0	64	30	31.9149
TTYH3	0	genome.wustl.edu	37	7	2698584	2698584	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	2698584	2698584	G	A	SNP	TTYH3	ENST00000258796	human	ensembl	74_37	+1	known	missense	c.1435	p.A479T	1.000	NULL	pfam_Tweety	-	no_errors	TTYH3	HGNC	ENSG00000136295				156	0	0	79	31	28.1818
HOXA1	0	genome.wustl.edu	37	7	27134298	27134298	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	27134298	27134298	C	T	SNP	HOXA1	ENST00000343060	human	ensembl	74_37	-1	known	missense	c.769	p.A257T	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,prints_Homeobox_metazoa,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,prints_Homeobox_metazoa,pfscan_Homeobox_dom	-	no_errors	HOXA1	HGNC	ENSG00000105991				93	0	0	73	18	19.7802
HOXA1	0	genome.wustl.edu	37	7	27135154	27135154	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	27135154	27135154	G	A	SNP	HOXA1	ENST00000343060	human	ensembl	74_37	-1	known	silent	c.378	p.C126	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,prints_Homeobox_metazoa,pfscan_Homeobox_dom	-	no_errors	HOXA1	HGNC	ENSG00000105991				54	0	0	54	21	28
HOXA6	0	genome.wustl.edu	37	7	27185359	27185359	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	27185359	27185359	C	T	SNP	HOXA6	ENST00000222728	human	ensembl	74_37	-1	known	missense	c.620	p.R207H	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa,prints_Homeobox_antennapedia	-	no_errors	HOXA6	HGNC	ENSG00000106006				155	0	0	76	36	32.1429
AMZ1	0	genome.wustl.edu	37	7	2740354	2740354	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	2740354	2740354	G	A	SNP	AMZ1	ENST00000312371	human	ensembl	74_37	+1	known	missense	c.269	p.R90H	0.012	NULL	pfam_Pept_M54_archaemetzincn	-	no_errors	AMZ1	HGNC	ENSG00000174945				42	0	0	31	9	22.5
CARD11	0	genome.wustl.edu	37	7	2963993	2963993	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	2963993	2963993	C	T	SNP	CARD11	ENST00000396946	human	ensembl	74_37	-1	known	missense	c.1814	p.S605N	0.971	NULL	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,superfamily_PDZ,pfscan_CARD	-	no_errors	CARD11	HGNC	ENSG00000198286				37	0	0	24	7	22.5806
NEUROD6	0	genome.wustl.edu	37	7	31378581	31378581	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	31378581	31378581	G	A	SNP	NEUROD6	ENST00000297142	human	ensembl	74_37	-1	known	missense	c.302	p.A101V	1.000	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pirsf_TF_bHLH_NeuroD,pfscan_bHLH_dom	pfam_Neurogenic_DUF,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pirsf_TF_bHLH_NeuroD,pfscan_bHLH_dom	-	no_errors	NEUROD6	HGNC	ENSG00000164600				154	0	0	116	34	22.6667
CCDC129	0	genome.wustl.edu	37	7	31592727	31592727	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	31592727	31592727	C	T	SNP	CCDC129	ENST00000451887	human	ensembl	74_37	+1	known	missense	c.167	p.A56V	0.002	NULL	NULL	-	no_errors	CCDC129	HGNC	ENSG00000180347				38	0	0	18	9	33.3333
BMPER	0	genome.wustl.edu	37	7	33945297	33945297	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	33945297	33945297	C	T	SNP	BMPER	ENST00000297161	human	ensembl	74_37	+1	known	silent	c.72	p.C24	0.996	NULL	pfam_VWF_type-D,pfam_VWF_C,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_C,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,pfscan_VWF_C	-	no_errors	BMPER	HGNC	ENSG00000164619				28	0	0	29	6	17.1429
BMPER	0	genome.wustl.edu	37	7	34118628	34118628	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	34118628	34118628	G	A	SNP	BMPER	ENST00000297161	human	ensembl	74_37	+1	known	missense	c.1238	p.R413H	1.000	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_VWF_C,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_C,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,pfscan_VWF_C	-	no_errors	BMPER	HGNC	ENSG00000164619				91	0	0	94	7	6.93069
DPY19L2P1	0	genome.wustl.edu	37	7	35131548	35131548	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	35131548	35131548	G	A	SNP	DPY19L2P1	ENST00000436258	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.985	-	-	-	no_errors	DPY19L2P1	HGNC	ENSG00000189212				56	0	0	46	6	11.5385
DPY19L2P1	0	genome.wustl.edu	37	7	35144294	35144294	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	35144294	35144294	G	A	SNP	DPY19L2P1	ENST00000436258	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.996	-	-	-	no_errors	DPY19L2P1	HGNC	ENSG00000189212				60	0	0	57	17	22.973
ANLN	0	genome.wustl.edu	37	7	36447449	36447449	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	36447449	36447449	C	T	SNP	ANLN	ENST00000265748	human	ensembl	74_37	+1	known	missense	c.980	p.T327M	0.676	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	ANLN	HGNC	ENSG00000011426				71	0	0	85	5	5.55556
ELMO1	0	genome.wustl.edu	37	7	37253022	37253022	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	37253022	37253022	G	A	SNP	ELMO1	ENST00000310758	human	ensembl	74_37	-1	known	missense	c.872	p.A291V	1.000	NULL	pfam_DUF3361,pfam_Engulfment_cell_motility_ELMO,superfamily_ARM-type_fold	-	no_errors	ELMO1	HGNC	ENSG00000155849				37	0	0	33	9	21.4286
ELMO1	0	genome.wustl.edu	37	7	37264526	37264526	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	37264526	37264526	G	A	SNP	ELMO1	ENST00000310758	human	ensembl	74_37	-1	known	missense	c.659	p.A220V	1.000	pfam_DUF3361,superfamily_ARM-type_fold	pfam_DUF3361,pfam_Engulfment_cell_motility_ELMO,superfamily_ARM-type_fold	-	no_errors	ELMO1	HGNC	ENSG00000155849				75	0	0	54	20	27.027
GPR141	0	genome.wustl.edu	37	7	37780303	37780303	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	37780303	37780303	T	C	SNP	GPR141	ENST00000334425	human	ensembl	74_37	+1	known	missense	c.308	p.F103S	0.995	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR141	HGNC	ENSG00000187037				108	0	0	84	16	16
SFRP4	0	genome.wustl.edu	37	7	37947223	37947223	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	37947223	37947223	T	C	SNP	SFRP4	ENST00000436072	human	ensembl	74_37	-1	known	missense	c.899	p.D300G	1.000	superfamily_TIMP-like_OB-fold,pfscan_Netrin_domain	pfam_Frizzled_dom,pfam_Netrin_module_non-TIMP,superfamily_Frizzled_dom,superfamily_TIMP-like_OB-fold,smart_Frizzled_dom,smart_Netrin_module_non-TIMP,pfscan_Frizzled_dom,pfscan_Netrin_domain	-	no_errors	SFRP4	HGNC	ENSG00000106483				46	0	0	51	14	21.5385
SDK1	0	genome.wustl.edu	37	7	3991379	3991379	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	3991379	3991379	G	T	SNP	SDK1	ENST00000404826	human	ensembl	74_37	+1	known	missense	c.977	p.S326I	0.939	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	SDK1	HGNC	ENSG00000146555				53	0	0	40	8	16.6667
INHBA	0	genome.wustl.edu	37	7	41729601	41729601	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	41729601	41729601	G	A	SNP	INHBA	ENST00000242208	human	ensembl	74_37	-1	known	missense	c.928	p.R310W	1.000	NULL	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_betaA,prints_Inhibin_asu	-	no_errors	INHBA	HGNC	ENSG00000122641				103	0	0	51	26	33.7662
GLI3	0	genome.wustl.edu	37	7	42085021	42085021	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	42085021	42085021	G	A	SNP	GLI3	ENST00000395925	human	ensembl	74_37	-1	known	missense	c.788	p.T263M	0.997	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI3	HGNC	ENSG00000106571				138	0	0	111	37	25
C7orf25	0	genome.wustl.edu	37	7	42949911	42949911	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	42949911	42949911	C	T	SNP	C7orf25	ENST00000431882	human	ensembl	74_37	-1	known	missense	c.763	p.A255T	0.755	pfam_DUF1308	pfam_DUF1308	-	no_errors	C7orf25	HGNC	ENSG00000136197				85	0	0	72	5	6.49351
PSMA2	0	genome.wustl.edu	37	7	42967003	42967003	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	42967003	42967003	C	T	SNP	PSMA2	ENST00000223321	human	ensembl	74_37	-1	known	missense	c.97	p.A33T	1.000	pfam_Proteasome_sua/b	pfam_Proteasome_sua/b,pfam_Proteasome_asu_N,smart_Proteasome_asu_N	-	no_errors	PSMA2	HGNC	ENSG00000106588				48	0	0	33	22	40
HECW1	0	genome.wustl.edu	37	7	43546741	43546741	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	43546741	43546741	C	T	SNP	HECW1	ENST00000395891	human	ensembl	74_37	+1	known	nonsense	c.3637	p.Q1213*	1.000	NULL	pfam_HECT,pfam_WW_dom,pfam_C2_dom,superfamily_HECT,superfamily_WW_dom,superfamily_C2_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_C2_dom,pfscan_WW_dom	-	no_errors	HECW1	HGNC	ENSG00000002746				68	0	0	74	5	6.32911
HECW1	0	genome.wustl.edu	37	7	43580834	43580834	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	43580834	43580834	G	T	SNP	HECW1	ENST00000395891	human	ensembl	74_37	+1	known	missense	c.4092	p.R1364S	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_dom,pfam_C2_dom,superfamily_HECT,superfamily_WW_dom,superfamily_C2_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_C2_dom,pfscan_WW_dom	-	no_errors	HECW1	HGNC	ENSG00000002746				100	0	0	72	17	19.1011
HECW1	0	genome.wustl.edu	37	7	43594297	43594297	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	43594297	43594297	C	T	SNP	HECW1	ENST00000395891	human	ensembl	74_37	+1	known	silent	c.4617	p.S1539	0.955	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_dom,pfam_C2_dom,superfamily_HECT,superfamily_WW_dom,superfamily_C2_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_C2_dom,pfscan_WW_dom	-	no_errors	HECW1	HGNC	ENSG00000002746				34	0	0	14	4	22.2222
POLR2J4	0	genome.wustl.edu	37	7	43982539	43982539	+	RNA	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	43982539	43982539	T	C	SNP	POLR2J4	ENST00000427076	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.942	-	-	-	no_errors	POLR2J4	HGNC	ENSG00000214783				96	0	0	83	32	27.8261
LINC00957	0	genome.wustl.edu	37	7	44079134	44079134	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	44079134	44079134	G	A	SNP	LINC00957	ENST00000441052	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	LINC00957	HGNC	ENSG00000235314				30	0	0	15	3	16.6667
DBNL	0	genome.wustl.edu	37	7	44092477	44092477	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	44092477	44092477	C	T	SNP	DBNL	ENST00000429716	human	ensembl	74_37	+1	known	missense	c.151	p.R51C	0.009	NULL	NULL	-	no_errors	DBNL	HGNC	ENSG00000136279				23	0	0	11	7	38.8889
AEBP1	0	genome.wustl.edu	37	7	44147270	44147270	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	44147270	44147270	A	G	SNP	AEBP1	ENST00000223357	human	ensembl	74_37	+1	known	missense	c.710	p.D237G	1.000	NULL	pfam_Peptidase_M14,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_CarboxyPept-like_regulatory,smart_Coagulation_fac_5/8-C_type_dom,smart_Peptidase_M14,pfscan_Coagulation_fac_5/8-C_type_dom,prints_Peptidase_M14	-	no_errors	AEBP1	HGNC	ENSG00000106624				48	0	0	39	3	7.14286
NUDCD3	0	genome.wustl.edu	37	7	44432048	44432048	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	44432048	44432048	C	T	SNP	NUDCD3	ENST00000355451	human	ensembl	74_37	-1	known	missense	c.823	p.A275T	1.000	superfamily_HSP20-like_chaperone,pfscan_CS_dom	pfam_CS_dom,superfamily_HSP20-like_chaperone,pfscan_CS_dom	-	no_errors	NUDCD3	HGNC	ENSG00000015676				131	0	0	113	7	5.83333
OGDH	0	genome.wustl.edu	37	7	44714124	44714124	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	44714124	44714124	C	T	SNP	OGDH	ENST00000222673	human	ensembl	74_37	+1	known	silent	c.903	p.G301	0.007	pfam_DH_E1,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	pfam_DH_E1,pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	-	no_errors	OGDH	HGNC	ENSG00000105953				84	0	0	63	5	7.35294
ZMIZ2	0	genome.wustl.edu	37	7	44796067	44796067	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	44796067	44796067	G	A	SNP	ZMIZ2	ENST00000309315	human	ensembl	74_37	+1	known	missense	c.94	p.A32T	1.000	NULL	pfam_Znf_MIZ,pfscan_Znf_MIZ	-	no_errors	ZMIZ2	HGNC	ENSG00000122515				57	0	0	35	16	31.3725
MYO1G	0	genome.wustl.edu	37	7	45010231	45010231	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	45010231	45010231	C	T	SNP	MYO1G	ENST00000258787	human	ensembl	74_37	-1	known	missense	c.1177	p.V393M	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO1G	HGNC	ENSG00000136286				62	0	0	40	25	38.4615
RAMP3	0	genome.wustl.edu	37	7	45222982	45222982	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	45222982	45222982	C	T	SNP	RAMP3	ENST00000242249	human	ensembl	74_37	+1	known	missense	c.418	p.R140C	1.000	pfam_RAMP	pfam_RAMP	-	no_errors	RAMP3	HGNC	ENSG00000122679				85	0	0	66	13	16.4557
ADCY1	0	genome.wustl.edu	37	7	45662269	45662269	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	45662269	45662269	C	T	SNP	ADCY1	ENST00000297323	human	ensembl	74_37	+1	known	missense	c.947	p.A316V	1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY1	HGNC	ENSG00000164742				37	0	0	26	11	29.7297
ADCY1	0	genome.wustl.edu	37	7	45717589	45717589	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	45717589	45717589	G	A	SNP	ADCY1	ENST00000297323	human	ensembl	74_37	+1	known	missense	c.1727	p.R576H	1.000	NULL	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY1	HGNC	ENSG00000164742				130	0	0	97	12	11.0092
IGFBP1	0	genome.wustl.edu	37	7	45932600	45932600	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	45932600	45932600	C	T	SNP	IGFBP1	ENST00000275525	human	ensembl	74_37	+1	known	silent	c.690	p.C230	0.591	pfam_Thyroglobulin_1,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1,prints_IGFBP_1-6_chordata	pfam_Thyroglobulin_1,pfam_IGFBP-like,superfamily_Thyroglobulin_1,superfamily_Growth_fac_rcpt_N_dom,smart_IGFBP-like,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1,prints_IGFBP_1-6_chordata,prints_IGFBP1	-	no_errors	IGFBP1	HGNC	ENSG00000146678				72	0	0	41	23	35.9375
TNS3	0	genome.wustl.edu	37	7	47409180	47409180	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	47409180	47409180	C	T	SNP	TNS3	ENST00000311160	human	ensembl	74_37	-1	known	missense	c.1063	p.A355T	1.000	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_dom,smart_Tyr_Pase_cat,smart_SH2,smart_PTB/PI_dom,pfscan_SH2,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS3	HGNC	ENSG00000136205				39	0	0	26	14	35
TNS3	0	genome.wustl.edu	37	7	47479119	47479119	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	47479119	47479119	C	T	SNP	TNS3	ENST00000311160	human	ensembl	74_37	-1	known	missense	c.116	p.R39H	0.954	pfscan_Phosphatase_tensin-typ	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_dom,smart_Tyr_Pase_cat,smart_SH2,smart_PTB/PI_dom,pfscan_SH2,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS3	HGNC	ENSG00000136205				22	0	0	19	4	17.3913
PKD1L1	0	genome.wustl.edu	37	7	47842892	47842892	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	47842892	47842892	G	A	SNP	PKD1L1	ENST00000289672	human	ensembl	74_37	-1	known	silent	c.7878	p.C2626	0.004	pfam_PKD1_2_channel	pfam_PKD/REJ-like,pfam_PKD1_2_channel,pfam_PKD_dom,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,superfamily_PKD_dom,smart_PKD/Chitinase_dom,smart_PLAT/LH2_dom,pfscan_PKD_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like	-	no_errors	PKD1L1	HGNC	ENSG00000158683				58	0	0	50	13	20.6349
FOXK1	0	genome.wustl.edu	37	7	4796712	4796712	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	4796712	4796712	C	T	SNP	FOXK1	ENST00000328914	human	ensembl	74_37	+1	known	nonsense	c.1138	p.R380*	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head	pfam_TF_fork_head,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,smart_TF_fork_head,pfscan_FHA_dom,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXK1	HGNC	ENSG00000164916				95	0	0	91	6	6.18557
ABCA13	0	genome.wustl.edu	37	7	48280633	48280633	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	48280633	48280633	G	A	SNP	ABCA13	ENST00000435803	human	ensembl	74_37	+1	known	missense	c.1232	p.G411D	0.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869				130	0	0	113	32	22.069
ABCA13	0	genome.wustl.edu	37	7	48318199	48318199	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	48318199	48318199	G	A	SNP	ABCA13	ENST00000435803	human	ensembl	74_37	+1	known	missense	c.7408	p.A2470T	0.005	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869				146	0	0	141	46	24.5989
ABCA13	0	genome.wustl.edu	37	7	48413962	48413962	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	48413962	48413962	G	A	SNP	ABCA13	ENST00000435803	human	ensembl	74_37	+1	known	missense	c.11152	p.A3718T	0.991	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869				29	0	0	16	8	33.3333
ABCA13	0	genome.wustl.edu	37	7	48450180	48450180	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	48450180	48450180	C	T	SNP	ABCA13	ENST00000435803	human	ensembl	74_37	+1	known	missense	c.12134	p.A4045V	0.995	superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869				95	0	0	95	11	10.3774
RADIL	0	genome.wustl.edu	37	7	4871777	4871777	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	4871777	4871777	C	T	SNP	RADIL	ENST00000399583	human	ensembl	74_37	-1	known	silent	c.1449	p.A483	0.919	NULL	pfam_Dil_domain,pfam_Ras-assoc,pfam_PDZ,superfamily_PDZ,superfamily_SMAD_FHA_domain,smart_Ras-assoc,smart_PDZ,pfscan_Dilute,pfscan_PDZ,pfscan_Ras-assoc	-	no_errors	RADIL	HGNC	ENSG00000157927				19	0	0	11	4	26.6667
FIGNL1	0	genome.wustl.edu	37	7	50514928	50514928	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	50514928	50514928	C	T	SNP	FIGNL1	ENST00000356889	human	ensembl	74_37	-1	known	missense	c.58	p.A20T	0.978	NULL	pfam_ATPase_AAA_core,pfam_Vps4_C,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	FIGNL1	HGNC	ENSG00000132436				37	0	0	36	5	12.1951
DDC	0	genome.wustl.edu	37	7	50611704	50611704	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	50611704	50611704	C	T	SNP	DDC	ENST00000357936	human	ensembl	74_37	-1	known	missense	c.80	p.R27H	0.998	superfamily_PyrdxlP-dep_Trfase	pfam_PyrdxlP-dep_de-COase,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase,prints_Aromatic_deC	-	no_errors	DDC	HGNC	ENSG00000132437				132	0	0	93	30	24.3902
GRB10	0	genome.wustl.edu	37	7	50771543	50771543	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	50771543	50771543	C	T	SNP	GRB10	ENST00000398812	human	ensembl	74_37	-1	known	silent	c.114	p.Q38	0.000	NULL	pfam_BPS-dom,pfam_SH2,pfam_Ras-assoc,pfam_Pleckstrin_homology,smart_Ras-assoc,smart_Pleckstrin_homology,smart_SH2,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SH2,prints_SH2	-	no_errors	GRB10	HGNC	ENSG00000106070				60	0	0	62	6	8.82353
RBAK	0	genome.wustl.edu	37	7	5097398	5097398	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	5097398	5097398	C	T	SNP	RBAK	ENST00000353796	human	ensembl	74_37	+1	known	nonsense	c.226	p.Q76*	0.000	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	RBAK	HGNC	ENSG00000146587				102	0	0	83	25	23.1481
SLC29A4	0	genome.wustl.edu	37	7	5331433	5331433	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	5331433	5331433	C	T	SNP	SLC29A4	ENST00000406453	human	ensembl	74_37	+1	novel	missense	c.488	p.P163L	0.987	prints_Eqnu_transpt	pfam_Eqnu_transpt,superfamily_MFS_dom_general_subst_transpt,prints_Eqnu_transpt	-	no_errors	SLC29A4	HGNC	ENSG00000164638				46	0	0	24	17	41.4634
EGFR	0	genome.wustl.edu	37	7	55214312	55214312	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	55214312	55214312	C	T	SNP	EGFR	ENST00000275493	human	ensembl	74_37	+1	known	silent	c.438	p.G146	0.964	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_EGF_rcpt_L	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	EGFR	HGNC	ENSG00000146648				54	0	0	48	4	7.69231
EGFR	0	genome.wustl.edu	37	7	55220348	55220348	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	55220348	55220348	C	T	SNP	EGFR	ENST00000275493	human	ensembl	74_37	+1	known	silent	c.738	p.S246	0.745	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Furin-like_Cys-rich_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	EGFR	HGNC	ENSG00000146648				62	0	0	51	15	22.7273
EGFR	0	genome.wustl.edu	37	7	55221829	55221829	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	55221829	55221829	C	T	SNP	EGFR	ENST00000275493	human	ensembl	74_37	+1	known	silent	c.873	p.C291	0.995	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Furin-like_Cys-rich_dom,superfamily_Growth_fac_rcpt_N_dom	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	EGFR	HGNC	ENSG00000146648				87	0	0	63	6	8.69565
EGFR	0	genome.wustl.edu	37	7	55242511	55242511	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	55242511	55242511	G	A	SNP	EGFR	ENST00000275493	human	ensembl	74_37	+1	known	missense	c.2281	p.D761N	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	EGFR	HGNC	ENSG00000146648				59	0	0	61	4	6.15385
FBXL18	0	genome.wustl.edu	37	7	5541130	5541130	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	5541130	5541130	C	T	SNP	FBXL18	ENST00000453700	human	ensembl	74_37	-1	known	missense	c.770	p.R257H	1.000	NULL	pfam_F-box_dom,superfamily_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXL18	HGNC	ENSG00000155034				28	0	0	14	8	36.3636
LANCL2	0	genome.wustl.edu	37	7	55479775	55479775	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	55479775	55479775	C	T	SNP	LANCL2	ENST00000254770	human	ensembl	74_37	+1	known	missense	c.1001	p.A334V	1.000	pfam_LANC-like,superfamily_6-hairpin_glycosidase-like,prints_LanC-like_prot_euk,prints_LANC-like	pfam_LANC-like,superfamily_6-hairpin_glycosidase-like,prints_LanC-like_prot_euk,prints_LANC-like	-	no_errors	LANCL2	HGNC	ENSG00000132434				44	0	0	33	14	29.7872
ACTB	0	genome.wustl.edu	37	7	5568056	5568056	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	5568056	5568056	C	T	SNP	ACTB	ENST00000331789	human	ensembl	74_37	-1	known	missense	c.658	p.A220T	0.999	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTB	HGNC	ENSG00000075624				114	0	0	72	28	28
FKBP9L	0	genome.wustl.edu	37	7	55755533	55755533	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	55755533	55755533	G	A	SNP	FKBP9L	ENST00000455909	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	FKBP9L	HGNC	ENSG00000176826				77	0	0	64	7	9.85915
CCT6A	0	genome.wustl.edu	37	7	56122107	56122107	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	56122107	56122107	G	A	SNP	CCT6A	ENST00000275603	human	ensembl	74_37	+1	known	missense	c.247	p.A83T	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,tigrfam_Chap_CCT_zeta	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_zeta	-	no_errors	CCT6A	HGNC	ENSG00000146731				129	0	0	99	27	21.4286
RNF216	0	genome.wustl.edu	37	7	5792588	5792588	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	5792588	5792588	C	T	SNP	RNF216	ENST00000389902	human	ensembl	74_37	-1	known	silent	c.90	p.G30	0.998	NULL	smart_Znf_C6HC	-	no_errors	RNF216	HGNC	ENSG00000011275				63	0	0	47	11	18.9655
ENSG00000244550	0	genome.wustl.edu	37	7	62693510	62693510	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	62693510	62693510	C	T	SNP	ENSG00000244550	ENST00000451381	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP5-905H7.3	Clone_based_vega_gene	ENSG00000244550				22	0	0	17	5	22.7273
GUSB	0	genome.wustl.edu	37	7	65439577	65439577	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	65439577	65439577	G	A	SNP	GUSB	ENST00000304895	human	ensembl	74_37	-1	known	nonsense	c.1180	p.Q394*	1.000	pfam_Glyco_hydro_2_TIM,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_2_TIM,pfam_Glyco_hydro_2_N,pfam_Glyco_hydro_2_Ig-like,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,superfamily_Glyco_hydro_2_Ig-like,prints_Glyco_hydro_2	-	no_errors	GUSB	HGNC	ENSG00000169919				84	0	0	56	11	16.4179
ENSG00000230189	0	genome.wustl.edu	37	7	65894923	65894923	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	65894923	65894923	G	A	SNP	ENSG00000230189	ENST00000442578	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	GS1-124K5.2	Clone_based_vega_gene	ENSG00000230189				38	0	0	47	6	11.3208
CCZ1B	0	genome.wustl.edu	37	7	6836263	6836263	+	Splice_Site	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	6836263	6836263	C	T	SNP	CCZ1B	ENST00000597208	human	ensembl	74_37	-1	putative	splice_site	c.NULL	NULL	0.027	-	-	-	no_errors	CCZ1B	HGNC	ENSG00000146574				320	0	0	299	21	6.5625
AUTS2	0	genome.wustl.edu	37	7	70255333	70255333	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	70255333	70255333	G	A	SNP	AUTS2	ENST00000342771	human	ensembl	74_37	+1	known	missense	c.3131	p.R1044H	1.000	NULL	prints_AUTS2	-	no_errors	AUTS2	HGNC	ENSG00000158321				38	0	0	16	10	38.4615
WBSCR17	0	genome.wustl.edu	37	7	71142200	71142200	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	71142200	71142200	G	A	SNP	WBSCR17	ENST00000333538	human	ensembl	74_37	+1	known	missense	c.1409	p.R470H	0.998	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	WBSCR17	HGNC	ENSG00000185274				218	0	0	205	11	5.09259
POM121	0	genome.wustl.edu	37	7	72413409	72413409	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	72413409	72413409	G	A	SNP	POM121	ENST00000434423	human	ensembl	74_37	+1	known	silent	c.2877	p.P959	0.282	NULL	NULL	-	no_errors	POM121	HGNC	ENSG00000196313				26	0	0	15	5	25
POM121	0	genome.wustl.edu	37	7	72413634	72413634	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	72413634	72413634	G	A	SNP	POM121	ENST00000434423	human	ensembl	74_37	+1	known	silent	c.3102	p.T1034	0.001	NULL	NULL	-	no_errors	POM121	HGNC	ENSG00000196313				69	0	0	40	17	29.8246
NSUN5	0	genome.wustl.edu	37	7	72722781	72722781	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	72722781	72722781	G	A	SNP	NSUN5	ENST00000438747	human	ensembl	74_37	-1	known	silent	c.7	p.L3	0.160	NULL	pfam_Fmu/NOL1/Nop2p,prints_RCMT	-	no_errors	NSUN5	HGNC	ENSG00000130305				37	0	0	19	5	20.8333
BAZ1B	0	genome.wustl.edu	37	7	72884801	72884801	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	72884801	72884801	C	T	SNP	BAZ1B	ENST00000339594	human	ensembl	74_37	-1	known	missense	c.2606	p.R869H	0.983	superfamily_ARM-type_fold	pfam_WSTF_Acf1_Cbp146,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_WSTF_Acf1_Cbp146,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ1B	HGNC	ENSG00000009954				91	0	0	93	8	7.92079
BAZ1B	0	genome.wustl.edu	37	7	72891452	72891452	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	72891452	72891452	C	T	SNP	BAZ1B	ENST00000339594	human	ensembl	74_37	-1	known	missense	c.2339	p.R780Q	1.000	superfamily_ARM-type_fold	pfam_WSTF_Acf1_Cbp146,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_WSTF_Acf1_Cbp146,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ1B	HGNC	ENSG00000009954				66	0	0	63	14	18.1818
TBL2	0	genome.wustl.edu	37	7	72987764	72987764	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	72987764	72987764	G	A	SNP	TBL2	ENST00000305632	human	ensembl	74_37	-1	known	missense	c.484	p.R162C	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TBL2	HGNC	ENSG00000106638				62	0	0	56	5	8.19672
ELN	0	genome.wustl.edu	37	7	73474271	73474271	+	Silent	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	73474271	73474271	T	C	SNP	ELN	ENST00000358929	human	ensembl	74_37	+1	known	silent	c.1575	p.G525	0.023	NULL	prints_Tropoelastin	-	no_errors	ELN	HGNC	ENSG00000049540				134	1	0.740741	78	33	29.7297
LAT2	0	genome.wustl.edu	37	7	73636001	73636001	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	73636001	73636001	C	T	SNP	LAT2	ENST00000275635	human	ensembl	74_37	+1	known	missense	c.367	p.R123W	0.001	NULL	NULL	-	no_errors	LAT2	HGNC	ENSG00000086730				133	0	0	101	15	12.931
CLIP2	0	genome.wustl.edu	37	7	73753187	73753187	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	73753187	73753187	G	A	SNP	CLIP2	ENST00000223398	human	ensembl	74_37	+1	known	silent	c.531	p.T177	0.590	superfamily_CAP-Gly_domain	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_t-SNARE,pfscan_CAP-Gly_domain	-	no_errors	CLIP2	HGNC	ENSG00000106665				29	0	0	13	6	31.5789
POM121C	0	genome.wustl.edu	37	7	75068501	75068501	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	75068501	75068501	G	A	SNP	POM121C	ENST00000257665	human	ensembl	74_37	-1	known	missense	c.955	p.R319C	1.000	NULL	NULL	-	no_errors	POM121C	HGNC	ENSG00000135213				178	0	0	139	45	24.4565
POR	0	genome.wustl.edu	37	7	75608862	75608862	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	75608862	75608862	C	T	SNP	POR	ENST00000461988	human	ensembl	74_37	+1	known	nonsense	c.331	p.R111*	1.000	pfam_Flavodoxin/NO_synth,pfscan_Flavodoxin/NO_synth	pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_Riboflavin_synthase-like_b-brl,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	POR	HGNC	ENSG00000127948				35	0	0	38	8	17.3913
MIOS	0	genome.wustl.edu	37	7	7636049	7636049	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	7636049	7636049	G	A	SNP	MIOS	ENST00000340080	human	ensembl	74_37	+1	known	silent	c.2358	p.A786	0.818	NULL	smart_WD40_repeat	-	no_errors	MIOS	HGNC	ENSG00000164654				144	1	0.689655	151	10	6.21118
RSBN1L	0	genome.wustl.edu	37	7	77407902	77407902	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	77407902	77407902	G	A	SNP	RSBN1L	ENST00000334955	human	ensembl	74_37	+1	known	missense	c.1958	p.R653H	1.000	NULL	NULL	-	no_errors	RSBN1L	HGNC	ENSG00000187257				155	0	0	103	37	26.4286
MAGI2	0	genome.wustl.edu	37	7	77824371	77824371	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	77824371	77824371	G	A	SNP	MAGI2	ENST00000354212	human	ensembl	74_37	-1	known	nonsense	c.2089	p.R697*	1.000	NULL	pfam_PDZ,pfam_WW_dom,pfam_GK/Ca_channel_bsu,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_PDZ,smart_GK/Ca_channel_bsu,smart_WW_dom,pfscan_PDZ,pfscan_WW_dom,pfscan_Guanylate_kin-like	-	no_errors	MAGI2	HGNC	ENSG00000187391				47	0	0	28	3	9.67742
HEATR2	0	genome.wustl.edu	37	7	796464	796464	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	796464	796464	G	A	SNP	HEATR2	ENST00000297440	human	ensembl	74_37	+1	known	missense	c.1303	p.V435M	1.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	HEATR2	HGNC	ENSG00000164818				124	0	0	89	23	20.5357
GNAT3	0	genome.wustl.edu	37	7	80088124	80088124	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	80088124	80088124	G	C	SNP	GNAT3	ENST00000398291	human	ensembl	74_37	-1	known	missense	c.928	p.L310V	1.000	pfam_Gprotein_alpha_su,superfamily_P-loop_NTPase,smart_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_I	-	no_errors	GNAT3	HGNC	ENSG00000214415				27	0	0	14	10	41.6667
ENSG00000227719	0	genome.wustl.edu	37	7	8153705	8153705	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	8153705	8153705	G	A	SNP	ENSG00000227719	ENST00000449931	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AC006042.6	Clone_based_vega_gene	ENSG00000227719				66	0	0	42	13	23.6364
CACNA2D1	0	genome.wustl.edu	37	7	81588645	81588645	+	Silent	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	81588645	81588645	A	G	SNP	CACNA2D1	ENST00000356253	human	ensembl	74_37	-1	known	silent	c.3141	p.V1047	0.951	NULL	pfam_VDCC_a2/dsu,pfam_VWA_N,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D1	HGNC	ENSG00000153956				65	0	0	62	5	7.46269
HEATR2	0	genome.wustl.edu	37	7	825235	825235	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	825235	825235	C	T	SNP	HEATR2	ENST00000297440	human	ensembl	74_37	+1	known	missense	c.2513	p.A838V	0.069	NULL	pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	HEATR2	HGNC	ENSG00000164818				41	0	0	31	9	22.5
PCLO	0	genome.wustl.edu	37	7	82581328	82581328	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	82581328	82581328	G	A	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	missense	c.8941	p.P2981S	0.717	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				268	0	0	258	22	7.85714
SEMA3A	0	genome.wustl.edu	37	7	83590759	83590759	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	83590759	83590759	C	A	SNP	SEMA3A	ENST00000265362	human	ensembl	74_37	-1	known	missense	c.2244	p.K748N	1.000	NULL	pfam_Semap_dom,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Ig_sub,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA3A	HGNC	ENSG00000075213				162	0	0	154	17	9.94152
GRM3	0	genome.wustl.edu	37	7	86415724	86415724	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	86415724	86415724	C	T	SNP	GRM3	ENST00000361669	human	ensembl	74_37	+1	known	missense	c.616	p.R206C	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_GPCR_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_2,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GRM3	HGNC	ENSG00000198822				79	0	0	56	5	8.19672
KIAA1324L	0	genome.wustl.edu	37	7	86542475	86542475	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	86542475	86542475	C	T	SNP	KIAA1324L	ENST00000450689	human	ensembl	74_37	-1	known	missense	c.1777	p.A593T	1.000	superfamily_Growth_fac_rcpt_N_dom	superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Growth_fac_rcpt_N_dom	-	no_errors	KIAA1324L	HGNC	ENSG00000164659				63	0	0	40	15	27.2727
CROT	0	genome.wustl.edu	37	7	87006753	87006753	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	87006753	87006753	G	A	SNP	CROT	ENST00000331536	human	ensembl	74_37	+1	known	missense	c.965	p.G322D	1.000	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CROT	HGNC	ENSG00000005469				42	0	0	37	7	15.9091
ABCB1	0	genome.wustl.edu	37	7	87160729	87160729	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	87160729	87160729	G	A	SNP	ABCB1	ENST00000265724	human	ensembl	74_37	-1	known	nonsense	c.2566	p.Q856*	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB1	HGNC	ENSG00000085563				112	0	0	87	8	8.42105
DBF4	0	genome.wustl.edu	37	7	87533646	87533646	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	87533646	87533646	A	G	SNP	DBF4	ENST00000265728	human	ensembl	74_37	+1	known	missense	c.964	p.N322D	0.118	pfam_Znf_DBF,smart_Znf_DBF	pfam_Znf_DBF,superfamily_BRCT_dom,smart_Znf_DBF	-	no_errors	DBF4	HGNC	ENSG00000006634				64	0	0	53	14	20.8955
SUN1	0	genome.wustl.edu	37	7	888056	888056	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	888056	888056	C	T	SNP	SUN1	ENST00000456758	human	ensembl	74_37	+1	known	silent	c.834	p.C278	1.000	pfam_SUN1	pfam_SUN1,pfam_Sad1_UNC_C	-	no_errors	SUN1	HGNC	ENSG00000164828				156	0	0	103	39	27.4648
CDK14	0	genome.wustl.edu	37	7	90747451	90747451	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	90747451	90747451	A	G	SNP	CDK14	ENST00000380050	human	ensembl	74_37	+1	known	missense	c.1366	p.K456E	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK14	HGNC	ENSG00000058091				120	0	0	74	27	26.7327
MTERF	0	genome.wustl.edu	37	7	91503707	91503707	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	91503707	91503707	C	T	SNP	MTERF	ENST00000351870	human	ensembl	74_37	-1	known	missense	c.401	p.R134H	1.000	pfam_Mit_transcrip_term-rel,smart_Mit_transcrip_term-rel	pfam_Mit_transcrip_term-rel,smart_Mit_transcrip_term-rel	-	no_errors	MTERF	HGNC	ENSG00000127989				186	0	0	147	41	21.8085
AKAP9	0	genome.wustl.edu	37	7	91652318	91652318	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	91652318	91652318	G	A	SNP	AKAP9	ENST00000359028	human	ensembl	74_37	+1	known	silent	c.4179	p.P1393	0.017	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB	-	no_errors	AKAP9	HGNC	ENSG00000127914				78	0	0	85	23	21.2963
AKAP9	0	genome.wustl.edu	37	7	91718798	91718798	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	91718798	91718798	A	G	SNP	AKAP9	ENST00000359028	human	ensembl	74_37	+1	known	missense	c.9325	p.K3109E	0.922	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB	-	no_errors	AKAP9	HGNC	ENSG00000127914				47	0	0	90	6	6.25
AKAP9	0	genome.wustl.edu	37	7	91737871	91737871	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	91737871	91737871	C	T	SNP	AKAP9	ENST00000359028	human	ensembl	74_37	+1	known	silent	c.11622	p.Y3874	0.902	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB	-	no_errors	AKAP9	HGNC	ENSG00000127914				101	0	0	75	5	6.25
ERVW-1	0	genome.wustl.edu	37	7	92099158	92099158	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	92099158	92099158	C	T	SNP	ERVW-1	ENST00000493463	human	ensembl	74_37	-1	known	missense	c.538	p.A180T	0.537	pfam_TLV/ENV_coat_polyprotein	pfam_TLV/ENV_coat_polyprotein	-	no_errors	ERVW-1	HGNC	ENSG00000242950				49	0	0	35	4	10.2564
ERVW-1	0	genome.wustl.edu	37	7	92099550	92099550	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	92099550	92099550	G	A	SNP	ERVW-1	ENST00000493463	human	ensembl	74_37	-1	known	missense	c.146	p.A49V	0.095	NULL	pfam_TLV/ENV_coat_polyprotein	-	no_errors	ERVW-1	HGNC	ENSG00000242950				102	0	0	105	14	11.7647
SAMD9	0	genome.wustl.edu	37	7	92732197	92732197	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	92732197	92732197	G	A	SNP	SAMD9	ENST00000379958	human	ensembl	74_37	-1	known	missense	c.3214	p.L1072F	0.003	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,superfamily_P-loop_NTPase,smart_SAM,pfscan_SAM	-	no_errors	SAMD9	HGNC	ENSG00000205413				67	0	0	72	11	13.253
HEPACAM2	0	genome.wustl.edu	37	7	92848701	92848701	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	92848701	92848701	G	A	SNP	HEPACAM2	ENST00000394468	human	ensembl	74_37	-1	known	missense	c.143	p.A48V	1.000	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	HEPACAM2	HGNC	ENSG00000188175				96	0	0	86	27	23.8938
TFPI2	0	genome.wustl.edu	37	7	93519977	93519977	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	93519977	93519977	C	T	SNP	TFPI2	ENST00000222543	human	ensembl	74_37	-1	known	missense	c.14	p.R5H	0.000	pirsf_Prot_inhib_I2_TFPI	pirsf_Prot_inhib_I2_TFPI,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	-	no_errors	TFPI2	HGNC	ENSG00000105825				20	0	0	11	6	35.2941
COL1A2	0	genome.wustl.edu	37	7	94057646	94057646	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	94057646	94057646	G	A	SNP	COL1A2	ENST00000297268	human	ensembl	74_37	+1	known	missense	c.3568	p.A1190T	1.000	pfam_Fib_collagen_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fib_collagen_C	pfam_Collagen,pfam_Fib_collagen_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fib_collagen_C	-	no_errors	COL1A2	HGNC	ENSG00000164692				191	0	0	133	40	23.1214
ASB4	0	genome.wustl.edu	37	7	95157128	95157128	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	95157128	95157128	C	T	SNP	ASB4	ENST00000325885	human	ensembl	74_37	+1	known	missense	c.491	p.A164V	0.999	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	-	no_errors	ASB4	HGNC	ENSG00000005981				40	0	0	27	8	22.8571
ASB4	0	genome.wustl.edu	37	7	95157168	95157168	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	95157168	95157168	G	A	SNP	ASB4	ENST00000325885	human	ensembl	74_37	+1	known	silent	c.531	p.T177	0.180	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	-	no_errors	ASB4	HGNC	ENSG00000005981				42	0	0	29	5	14.7059
TECPR1	0	genome.wustl.edu	37	7	97850998	97850998	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	97850998	97850998	C	T	SNP	TECPR1	ENST00000379795	human	ensembl	74_37	-1	known	silent	c.3138	p.T1046	0.421	superfamily_RCC1/BLIP-II,smart_Beta-propeller_rpt_TECPR	pfam_Beta-propeller_rpt_TECPR,superfamily_RCC1/BLIP-II,smart_Beta-propeller_rpt_TECPR,smart_Peroxin/Ferlin	-	no_errors	TECPR1	HGNC	ENSG00000205356				51	0	0	27	13	32.5
NPTX2	0	genome.wustl.edu	37	7	98254261	98254261	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	98254261	98254261	C	T	SNP	NPTX2	ENST00000265634	human	ensembl	74_37	+1	known	missense	c.671	p.A224V	0.987	superfamily_ConA-like_lec_gl_sf,smart_Pentaxin	pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,prints_Pentaxin	-	no_errors	NPTX2	HGNC	ENSG00000106236				253	0	0	158	47	22.9268
TRRAP	0	genome.wustl.edu	37	7	98478778	98478778	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	98478778	98478778	C	T	SNP	TRRAP	ENST00000359863	human	ensembl	74_37	+1	known	missense	c.5	p.A2V	1.000	NULL	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	TRRAP	HGNC	ENSG00000196367				73	0	0	64	6	8.57143
TRRAP	0	genome.wustl.edu	37	7	98519385	98519385	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	98519385	98519385	C	T	SNP	TRRAP	ENST00000359863	human	ensembl	74_37	+1	known	missense	c.2632	p.R878C	1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	TRRAP	HGNC	ENSG00000196367				114	0	0	105	6	5.40541
TRRAP	0	genome.wustl.edu	37	7	98522829	98522829	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	98522829	98522829	C	T	SNP	TRRAP	ENST00000359863	human	ensembl	74_37	+1	known	missense	c.2918	p.A973V	1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	TRRAP	HGNC	ENSG00000196367				95	0	0	91	23	20.1754
TRRAP	0	genome.wustl.edu	37	7	98528370	98528370	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	98528370	98528370	C	T	SNP	TRRAP	ENST00000359863	human	ensembl	74_37	+1	known	missense	c.3508	p.R1170W	1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	TRRAP	HGNC	ENSG00000196367				57	0	0	52	6	10.3448
SMURF1	0	genome.wustl.edu	37	7	98655043	98655043	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	98655043	98655043	C	T	SNP	SMURF1	ENST00000361125	human	ensembl	74_37	-1	known	missense	c.335	p.G112E	1.000	superfamily_C2_dom,smart_C2_dom	pfam_HECT,pfam_WW_dom,pfam_C2_dom,superfamily_HECT,superfamily_C2_dom,superfamily_WW_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_C2_dom,pfscan_WW_dom	-	no_errors	SMURF1	HGNC	ENSG00000198742				62	0	0	67	8	10.6667
AZGP1P1	0	genome.wustl.edu	37	7	99581003	99581003	+	RNA	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	99581003	99581003	A	G	SNP	AZGP1P1	ENST00000425474	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.912	-	-	-	no_errors	AZGP1P1	HGNC	ENSG00000214313				54	0	0	49	4	7.54717
ZSCAN21	0	genome.wustl.edu	37	7	99662020	99662020	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	99662020	99662020	C	T	SNP	ZSCAN21	ENST00000292450	human	ensembl	74_37	+1	known	missense	c.1202	p.A401V	0.859	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN21	HGNC	ENSG00000166529				112	0	0	97	10	9.34579
STAG3	0	genome.wustl.edu	37	7	99808640	99808640	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	99808640	99808640	C	T	SNP	STAG3	ENST00000317296	human	ensembl	74_37	+1	known	missense	c.3245	p.A1082V	0.011	NULL	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG3	HGNC	ENSG00000066923				53	0	0	46	15	24.5902
PILRB	0	genome.wustl.edu	37	7	99950995	99950995	+	Splice_Site	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	99950995	99950995	G	T	SNP	PILRB	ENST00000610247	human	ensembl	74_37	+1	known	splice_site	c.1-1	e1-1	0.238	-	-	-	no_errors	PILRB	HGNC	ENSG00000121716				47	0	0	32	4	11.1111
VPS13B	0	genome.wustl.edu	37	8	100866085	100866085	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	100866085	100866085	A	G	SNP	VPS13B	ENST00000358544	human	ensembl	74_37	+1	known	missense	c.10543	p.I3515V	0.001	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549				169	0	0	135	33	19.6429
RGS22	0	genome.wustl.edu	37	8	101018332	101018332	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	101018332	101018332	C	T	SNP	RGS22	ENST00000360863	human	ensembl	74_37	-1	known	silent	c.2367	p.E789	0.996	NULL	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam	-	no_errors	RGS22	HGNC	ENSG00000132554				47	0	0	33	20	37.7358
FBXO43	0	genome.wustl.edu	37	8	101153265	101153265	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	101153265	101153265	T	C	SNP	FBXO43	ENST00000428847	human	ensembl	74_37	-1	known	missense	c.1217	p.D406G	0.000	NULL	pfam_Znf_C6HC,superfamily_F-box_dom,smart_Znf_C6HC	-	no_errors	FBXO43	HGNC	ENSG00000156509				95	0	0	106	12	10.1695
SPAG1	0	genome.wustl.edu	37	8	101232554	101232554	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	101232554	101232554	C	T	SNP	SPAG1	ENST00000251809	human	ensembl	74_37	+1	known	missense	c.1583	p.A528V	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	SPAG1	HGNC	ENSG00000104450				112	1	0.884956	98	25	20.3252
RNF19A	0	genome.wustl.edu	37	8	101271043	101271043	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	101271043	101271043	C	T	SNP	RNF19A	ENST00000341084	human	ensembl	74_37	-1	known	missense	c.2258	p.R753H	1.000	NULL	pfam_Znf_C6HC,smart_Znf_RING,smart_Znf_C6HC,pfscan_Znf_RING	-	no_errors	RNF19A	HGNC	ENSG00000034677				101	0	0	111	6	5.12821
RNF19A	0	genome.wustl.edu	37	8	101277003	101277003	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	101277003	101277003	C	T	SNP	RNF19A	ENST00000341084	human	ensembl	74_37	-1	known	missense	c.1202	p.R401H	1.000	NULL	pfam_Znf_C6HC,smart_Znf_RING,smart_Znf_C6HC,pfscan_Znf_RING	-	no_errors	RNF19A	HGNC	ENSG00000034677				135	0	0	115	26	18.4397
NCALD	0	genome.wustl.edu	37	8	102731525	102731525	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	102731525	102731525	G	A	SNP	NCALD	ENST00000311028	human	ensembl	74_37	-1	known	silent	c.333	p.D111	0.579	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	-	no_errors	NCALD	HGNC	ENSG00000104490				140	0	0	122	24	16.4384
NCALD	0	genome.wustl.edu	37	8	102731596	102731596	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	102731596	102731596	C	T	SNP	NCALD	ENST00000311028	human	ensembl	74_37	-1	known	missense	c.262	p.A88T	1.000	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	-	no_errors	NCALD	HGNC	ENSG00000104490				190	0	0	202	12	5.60748
FZD6	0	genome.wustl.edu	37	8	104340603	104340603	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	104340603	104340603	C	T	SNP	FZD6	ENST00000358755	human	ensembl	74_37	+1	known	silent	c.1500	p.C500	1.000	pfam_Frizzled,pfscan_GPCR_2-like	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD6	HGNC	ENSG00000164930				83	0	0	68	11	13.9241
CTHRC1	0	genome.wustl.edu	37	8	104390323	104390323	+	Silent	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	104390323	104390323	A	G	SNP	CTHRC1	ENST00000330295	human	ensembl	74_37	+1	known	silent	c.441	p.L147	0.995	NULL	pfam_Collagen	-	no_errors	CTHRC1	HGNC	ENSG00000164932				135	0	0	108	21	16.2791
RP1L1	0	genome.wustl.edu	37	8	10464545	10464545	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	10464545	10464545	C	T	SNP	RP1L1	ENST00000382483	human	ensembl	74_37	-1	known	missense	c.7063	p.A2355T	0.000	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1L1	HGNC	ENSG00000183638				119	0	0	89	27	23.2759
RP1L1	0	genome.wustl.edu	37	8	10480258	10480258	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	10480258	10480258	G	A	SNP	RP1L1	ENST00000382483	human	ensembl	74_37	-1	known	missense	c.454	p.R152W	0.987	smart_Doublecortin_dom,pfscan_Doublecortin_dom	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1L1	HGNC	ENSG00000183638				105	1	0.943396	90	17	15.8879
RP1L1	0	genome.wustl.edu	37	8	10480525	10480525	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	10480525	10480525	C	T	SNP	RP1L1	ENST00000382483	human	ensembl	74_37	-1	known	missense	c.187	p.A63T	0.976	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1L1	HGNC	ENSG00000183638				19	0	0	24	4	14.2857
LRP12	0	genome.wustl.edu	37	8	105509882	105509882	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	105509882	105509882	G	A	SNP	LRP12	ENST00000424843	human	ensembl	74_37	-1	known	missense	c.841	p.R281C	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_LDrepeatLR_classA_rpt,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP12	HGNC	ENSG00000147650				74	0	0	62	11	15.0685
ANGPT1	0	genome.wustl.edu	37	8	108264151	108264151	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	108264151	108264151	G	A	SNP	ANGPT1	ENST00000517746	human	ensembl	74_37	-1	known	missense	c.1429	p.H477Y	1.000	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	ANGPT1	HGNC	ENSG00000154188				191	0	0	150	31	17.1271
ANGPT1	0	genome.wustl.edu	37	8	108296925	108296925	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	108296925	108296925	T	C	SNP	ANGPT1	ENST00000517746	human	ensembl	74_37	-1	known	missense	c.1190	p.E397G	1.000	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	ANGPT1	HGNC	ENSG00000154188				66	0	0	75	8	9.63855
RSPO2	0	genome.wustl.edu	37	8	108972962	108972962	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	108972962	108972962	G	A	SNP	RSPO2	ENST00000276659	human	ensembl	74_37	-1	known	missense	c.367	p.R123C	1.000	superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat	superfamily_Growth_fac_rcpt_N_dom,superfamily_Thrombospondin_1_rpt,smart_Furin_repeat,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	RSPO2	HGNC	ENSG00000147655				69	0	0	66	14	17.5
MTMR9	0	genome.wustl.edu	37	8	11180276	11180276	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	11180276	11180276	C	T	SNP	MTMR9	ENST00000221086	human	ensembl	74_37	+1	known	silent	c.1629	p.D543	0.003	NULL	pfam_Myotubularin-like_Pase_dom	-	no_errors	MTMR9	HGNC	ENSG00000104643				58	0	0	61	12	16.4384
SLC35G5	0	genome.wustl.edu	37	8	11188883	11188883	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	11188883	11188883	C	T	SNP	SLC35G5	ENST00000382435	human	ensembl	74_37	+1	known	missense	c.268	p.R90C	0.827	pfam_DMT	pfam_DMT	-	no_errors	SLC35G5	HGNC	ENSG00000177710				210	0	0	153	37	19.4737
FAM167A	0	genome.wustl.edu	37	8	11301681	11301681	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	11301681	11301681	C	T	SNP	FAM167A	ENST00000284486	human	ensembl	74_37	-1	known	silent	c.240	p.E80	0.002	NULL	pfam_FAM167	-	no_errors	FAM167A	HGNC	ENSG00000154319				19	0	0	15	4	21.0526
CSMD3	0	genome.wustl.edu	37	8	113293565	113293565	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	113293565	113293565	T	A	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	missense	c.9346	p.N3116Y	1.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				61	0	0	57	13	18.5714
CSMD3	0	genome.wustl.edu	37	8	113299389	113299389	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	113299389	113299389	G	A	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	missense	c.9235	p.R3079C	0.998	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				91	0	0	104	9	7.9646
CSMD3	0	genome.wustl.edu	37	8	113966981	113966981	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	113966981	113966981	G	A	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	missense	c.1352	p.A451V	1.000	NULL	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				27	0	0	18	7	28
GATA4	0	genome.wustl.edu	37	8	11615827	11615827	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	11615827	11615827	G	A	SNP	GATA4	ENST00000335135	human	ensembl	74_37	+1	known	missense	c.1172	p.G391D	1.000	pirsf_TF_GATA_4/5/6	pfam_GATA_N,pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA_4/5/6,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA4	HGNC	ENSG00000136574				125	0	0	81	23	22.1154
TRPS1	0	genome.wustl.edu	37	8	116632282	116632282	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	116632282	116632282	C	T	SNP	TRPS1	ENST00000395715	human	ensembl	74_37	-1	known	missense	c.43	p.V15I	1.000	NULL	pfam_Znf_GATA,smart_Znf_C2H2-like,smart_Znf_GATA,pfscan_Znf_C2H2,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	TRPS1	HGNC	ENSG00000104447				50	0	0	27	16	37.2093
USP17L2	0	genome.wustl.edu	37	8	11996191	11996191	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	11996191	11996191	C	T	SNP	USP17L2	ENST00000333796	human	ensembl	74_37	-1	known	missense	c.79	p.A27T	0.053	NULL	pfam_Peptidase_C19/C67,pfam_HABP4_PAIRBP1-bd,pfscan_Peptidase_C19/C67	-	no_errors	USP17L2	HGNC	ENSG00000223443				104	0	0	89	10	10.101
DEPTOR	0	genome.wustl.edu	37	8	121013832	121013832	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	121013832	121013832	C	T	SNP	DEPTOR	ENST00000286234	human	ensembl	74_37	+1	known	nonsense	c.673	p.R225*	1.000	NULL	pfam_DEP_dom,superfamily_PDZ,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ	-	no_errors	DEPTOR	HGNC	ENSG00000155792				61	0	0	47	11	18.9655
COL14A1	0	genome.wustl.edu	37	8	121228677	121228677	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	121228677	121228677	T	C	SNP	COL14A1	ENST00000297848	human	ensembl	74_37	+1	known	missense	c.1685	p.I562T	0.084	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_VWF_A,pfam_Fibronectin_type3,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL14A1	HGNC	ENSG00000187955				105	0	0	108	7	6.08696
COL14A1	0	genome.wustl.edu	37	8	121259909	121259909	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	121259909	121259909	G	A	SNP	COL14A1	ENST00000297848	human	ensembl	74_37	+1	known	missense	c.2537	p.R846H	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_VWF_A,pfam_Fibronectin_type3,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL14A1	HGNC	ENSG00000187955				90	0	0	49	16	24.6154
HAS2	0	genome.wustl.edu	37	8	122641065	122641065	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	122641065	122641065	C	T	SNP	HAS2	ENST00000303924	human	ensembl	74_37	-1	known	silent	c.516	p.T172	0.992	NULL	pfam_Chitin_synth_fng	-	no_errors	HAS2	HGNC	ENSG00000170961				332	0	0	298	53	15.0997
ZHX2	0	genome.wustl.edu	37	8	123964440	123964440	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	123964440	123964440	C	T	SNP	ZHX2	ENST00000314393	human	ensembl	74_37	+1	known	silent	c.690	p.G230	0.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZHX2	HGNC	ENSG00000178764				111	0	0	137	8	5.51724
WDYHV1	0	genome.wustl.edu	37	8	124453601	124453601	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	124453601	124453601	C	T	SNP	WDYHV1	ENST00000287387	human	ensembl	74_37	+1	known	silent	c.564	p.G188	0.982	pfam_Prot_N_Gln_amidohydro_ab_roll	pfam_Prot_N_Gln_amidohydro_ab_roll	-	no_errors	WDYHV1	HGNC	ENSG00000156795				23	0	0	21	6	22.2222
NDUFB9	0	genome.wustl.edu	37	8	125555399	125555399	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	125555399	125555399	C	T	SNP	NDUFB9	ENST00000276689	human	ensembl	74_37	+1	known	missense	c.173	p.A58V	1.000	pfam_Complex1_LYR	pfam_Complex1_LYR	-	no_errors	NDUFB9	HGNC	ENSG00000147684				85	0	0	71	10	12.3457
MTSS1	0	genome.wustl.edu	37	8	125565387	125565387	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	125565387	125565387	G	A	SNP	MTSS1	ENST00000518547	human	ensembl	74_37	-1	known	missense	c.2114	p.A705V	0.509	NULL	pfam_IRSp53/MIM_homology_IMD,pfscan_WH2_dom	-	no_errors	MTSS1	HGNC	ENSG00000170873				261	0	0	216	17	7.29614
MTSS1	0	genome.wustl.edu	37	8	125568594	125568594	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	125568594	125568594	C	T	SNP	MTSS1	ENST00000518547	human	ensembl	74_37	-1	known	missense	c.1283	p.R428H	1.000	NULL	pfam_IRSp53/MIM_homology_IMD,pfscan_WH2_dom	-	no_errors	MTSS1	HGNC	ENSG00000170873				28	0	0	13	3	18.75
SQLE	0	genome.wustl.edu	37	8	126021249	126021249	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	126021249	126021249	C	T	SNP	SQLE	ENST00000265896	human	ensembl	74_37	+1	known	missense	c.859	p.L287F	0.998	pfam_Squalene_epoxidase,pfam_mOase_FAD-bd,prints_Rng_hydrolase-like	pfam_Squalene_epoxidase,pfam_mOase_FAD-bd,pfam_Pyr_OxRdtase_NAD-bd_dom,prints_Rng_hydrolase-like	-	no_errors	SQLE	HGNC	ENSG00000104549				31	0	0	24	5	17.2414
KIAA0196	0	genome.wustl.edu	37	8	126040911	126040911	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	126040911	126040911	G	A	SNP	KIAA0196	ENST00000318410	human	ensembl	74_37	-1	known	missense	c.3374	p.A1125V	1.000	NULL	pfam_WASH_strumpellin,superfamily_Ig_E-set	-	no_errors	KIAA0196	HGNC	ENSG00000164961				62	0	0	79	5	5.95238
ENSG00000253427	0	genome.wustl.edu	37	8	127504692	127504692	+	RNA	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	127504692	127504692	A	G	SNP	ENSG00000253427	ENST00000520171	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-103H7.1	Clone_based_vega_gene	ENSG00000253427				68	0	0	46	9	16.3636
GSDMC	0	genome.wustl.edu	37	8	130789633	130789633	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	130789633	130789633	C	A	SNP	GSDMC	ENST00000276708	human	ensembl	74_37	-1	known	missense	c.201	p.E67D	0.152	pfam_Gasdermin	pfam_Gasdermin	-	no_errors	GSDMC	HGNC	ENSG00000147697				72	0	0	54	16	22.8571
ASAP1	0	genome.wustl.edu	37	8	131070228	131070228	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	131070228	131070228	A	G	SNP	ASAP1	ENST00000357668	human	ensembl	74_37	-1	known	missense	c.3287	p.V1096A	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_p67phox	pfam_ArfGAP,pfam_SH3_domain,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_ArfGAP,prints_ArfGAP,prints_p67phox	-	no_errors	ASAP1	HGNC	ENSG00000153317				162	0	0	126	7	5.26316
ASAP1	0	genome.wustl.edu	37	8	131092151	131092151	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	131092151	131092151	G	A	SNP	ASAP1	ENST00000357668	human	ensembl	74_37	-1	known	missense	c.2639	p.S880L	0.902	NULL	pfam_ArfGAP,pfam_SH3_domain,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_ArfGAP,prints_ArfGAP,prints_p67phox	-	no_errors	ASAP1	HGNC	ENSG00000153317				289	0	0	226	62	21.5278
EFR3A	0	genome.wustl.edu	37	8	133014887	133014887	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	133014887	133014887	G	A	SNP	EFR3A	ENST00000254624	human	ensembl	74_37	+1	known	silent	c.2244	p.R748	0.999	NULL	superfamily_ARM-type_fold	-	no_errors	EFR3A	HGNC	ENSG00000132294				94	0	0	81	12	12.9032
PHF20L1	0	genome.wustl.edu	37	8	133806768	133806768	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	133806768	133806768	C	T	SNP	PHF20L1	ENST00000486199	human	ensembl	74_37	+1	known	nonsense	c.196	p.R66*	0.995	smart_Tudor,smart_Tudor-like_plant	pfam_DUF3776,smart_Tudor,smart_Tudor-like_plant	-	no_errors	PHF20L1	HGNC	ENSG00000129292				128	0	0	144	9	5.88235
PHF20L1	0	genome.wustl.edu	37	8	133829268	133829268	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	133829268	133829268	G	A	SNP	PHF20L1	ENST00000395386	human	ensembl	74_37	+1	putative	missense	c.1319	p.G440E	1.000	pfam_DUF3776	pfam_DUF3776,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Tudor,smart_Tudor-like_plant	-	no_errors	PHF20L1	HGNC	ENSG00000129292				63	0	0	52	10	16.129
PHF20L1	0	genome.wustl.edu	37	8	133848857	133848857	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	133848857	133848857	A	G	SNP	PHF20L1	ENST00000220847	human	ensembl	74_37	+1	known	missense	c.143	p.Q48R	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD	-	no_errors	PHF20L1	HGNC	ENSG00000129292				80	0	0	99	6	5.71429
TG	0	genome.wustl.edu	37	8	133898950	133898950	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	133898950	133898950	C	T	SNP	TG	ENST00000220616	human	ensembl	74_37	+1	known	nonsense	c.1333	p.R445*	0.000	pirsf_Thyroglobulin	pfam_Thyroglobulin_1,pfam_CarbesteraseB,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	-	no_errors	TG	HGNC	ENSG00000042832				122	1	0.813008	120	21	14.8936
TG	0	genome.wustl.edu	37	8	133931753	133931753	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	133931753	133931753	C	A	SNP	TG	ENST00000220616	human	ensembl	74_37	+1	known	missense	c.4511	p.A1504D	1.000	pfam_Tyr-kin_ephrin_A/B_rcpt-like,pirsf_Thyroglobulin	pfam_Thyroglobulin_1,pfam_CarbesteraseB,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	-	no_errors	TG	HGNC	ENSG00000042832				96	0	0	99	6	5.71429
TG	0	genome.wustl.edu	37	8	133961096	133961096	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	133961096	133961096	A	G	SNP	TG	ENST00000220616	human	ensembl	74_37	+1	known	missense	c.5309	p.E1770G	0.000	pirsf_Thyroglobulin	pfam_Thyroglobulin_1,pfam_CarbesteraseB,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	-	no_errors	TG	HGNC	ENSG00000042832				126	0	0	105	25	19.2308
WISP1	0	genome.wustl.edu	37	8	134232921	134232921	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	134232921	134232921	C	T	SNP	WISP1	ENST00000250160	human	ensembl	74_37	+1	known	silent	c.447	p.G149	0.977	pfam_VWF_C,smart_VWF_C,pirsf_IGFBP_CNN,pfscan_VWF_C	pfam_IGFBP-like,pfam_VWF_C,pfam_Cys_knot,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	WISP1	HGNC	ENSG00000104415				45	0	0	32	7	17.9487
WISP1	0	genome.wustl.edu	37	8	134237815	134237815	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	134237815	134237815	A	G	SNP	WISP1	ENST00000250160	human	ensembl	74_37	+1	known	missense	c.793	p.T265A	0.000	pirsf_IGFBP_CNN	pfam_IGFBP-like,pfam_VWF_C,pfam_Cys_knot,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	WISP1	HGNC	ENSG00000104415				50	0	0	32	22	40.7407
NDRG1	0	genome.wustl.edu	37	8	134276800	134276800	+	Silent	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	134276800	134276800	G	T	SNP	NDRG1	ENST00000323851	human	ensembl	74_37	-1	known	silent	c.195	p.I65	0.978	pfam_Ndr	pfam_Ndr	-	no_errors	NDRG1	HGNC	ENSG00000104419				74	0	0	63	11	14.8649
ZFAT	0	genome.wustl.edu	37	8	135524778	135524778	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	135524778	135524778	C	T	SNP	ZFAT	ENST00000377838	human	ensembl	74_37	-1	known	missense	c.3301	p.V1101I	0.260	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFAT	HGNC	ENSG00000066827				171	0	0	135	31	18.6747
ZFAT	0	genome.wustl.edu	37	8	135614866	135614866	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	135614866	135614866	C	T	SNP	ZFAT	ENST00000377838	human	ensembl	74_37	-1	known	missense	c.1096	p.V366I	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFAT	HGNC	ENSG00000066827				82	0	0	73	17	18.8889
COL22A1	0	genome.wustl.edu	37	8	139668154	139668154	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	139668154	139668154	T	C	SNP	COL22A1	ENST00000303045	human	ensembl	74_37	-1	known	missense	c.3319	p.N1107D	1.000	NULL	pfam_Collagen,pfam_VWF_A,superfamily_ConA-like_lec_gl_sf,smart_VWF_A,smart_Laminin_G,pfscan_VWF_A	-	no_errors	COL22A1	HGNC	ENSG00000169436				264	0	0	246	13	5.01931
COL22A1	0	genome.wustl.edu	37	8	139696666	139696666	+	Splice_Site	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	139696666	139696666	A	G	SNP	COL22A1	ENST00000303045	human	ensembl	74_37	-1	known	splice_site	c.3012+2	e38+2	0.918	-	-	-	no_errors	COL22A1	HGNC	ENSG00000169436				178	0	0	127	30	19.1083
COL22A1	0	genome.wustl.edu	37	8	139833507	139833507	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	139833507	139833507	C	T	SNP	COL22A1	ENST00000303045	human	ensembl	74_37	-1	known	missense	c.1117	p.A373T	1.000	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_Collagen,pfam_VWF_A,superfamily_ConA-like_lec_gl_sf,smart_VWF_A,smart_Laminin_G,pfscan_VWF_A	-	no_errors	COL22A1	HGNC	ENSG00000169436				67	0	0	60	19	24.0506
TRAPPC9	0	genome.wustl.edu	37	8	141321405	141321405	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	141321405	141321405	C	T	SNP	TRAPPC9	ENST00000389328	human	ensembl	74_37	-1	known	missense	c.1858	p.A620T	0.997	NULL	pfam_TRAPP_II_complex_Trs120	-	no_errors	TRAPPC9	HGNC	ENSG00000167632				50	0	0	36	14	28
AGO2	0	genome.wustl.edu	37	8	141542749	141542749	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	141542749	141542749	G	A	SNP	AGO2	ENST00000520628	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.001	-	-	-	no_errors	AGO2	HGNC	ENSG00000123908				25	0	0	17	5	22.7273
AGO2	0	genome.wustl.edu	37	8	141570572	141570572	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	141570572	141570572	C	T	SNP	AGO2	ENST00000220592	human	ensembl	74_37	-1	known	missense	c.556	p.E186K	1.000	pfam_DUF1785,superfamily_PAZ_dom	pfam_Piwi,pfam_PAZ_dom,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	AGO2	HGNC	ENSG00000123908				42	0	0	50	10	16.6667
PTP4A3	0	genome.wustl.edu	37	8	142432393	142432393	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	142432393	142432393	G	A	SNP	PTP4A3	ENST00000329397	human	ensembl	74_37	+1	known	missense	c.53	p.R18H	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Dual-sp_phosphatase_cat-dom,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase	-	no_errors	PTP4A3	HGNC	ENSG00000184489				90	0	0	88	14	13.7255
TSNARE1	0	genome.wustl.edu	37	8	143396392	143396392	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	143396392	143396392	G	A	SNP	TSNARE1	ENST00000307180	human	ensembl	74_37	-1	known	missense	c.1046	p.A349V	0.009	superfamily_t-SNARE,smart_Syntaxin_N	pfam_T_SNARE_dom,superfamily_t-SNARE,smart_Syntaxin_N,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	TSNARE1	HGNC	ENSG00000171045				60	0	0	59	6	9.23077
GLI4	0	genome.wustl.edu	37	8	144358659	144358659	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	144358659	144358659	C	T	SNP	GLI4	ENST00000340042	human	ensembl	74_37	+1	known	silent	c.816	p.C272	0.999	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI4	HGNC	ENSG00000250571				62	0	0	46	10	17.8571
EPPK1	0	genome.wustl.edu	37	8	144945091	144945091	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	144945091	144945091	C	T	SNP	EPPK1	ENST00000525985	human	ensembl	74_37	-1	known	silent	c.2331	p.T777	0.041	smart_Plectin_repeat	pfam_Plectin_repeat,smart_Plectin_repeat	-	no_errors	EPPK1	HGNC	ENSG00000227184				90	0	0	85	6	6.59341
PLEC	0	genome.wustl.edu	37	8	144993246	144993246	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	144993246	144993246	G	A	SNP	PLEC	ENST00000322810	human	ensembl	74_37	-1	known	silent	c.11154	p.G3718	0.001	NULL	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209				74	0	0	54	10	15.625
PARP10	0	genome.wustl.edu	37	8	145059646	145059646	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	145059646	145059646	G	C	SNP	PARP10	ENST00000313028	human	ensembl	74_37	-1	known	missense	c.607	p.P203A	0.111	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP10	HGNC	ENSG00000178685				17	0	0	13	4	23.5294
MAF1	0	genome.wustl.edu	37	8	145161285	145161285	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	145161285	145161285	C	T	SNP	MAF1	ENST00000322428	human	ensembl	74_37	+1	known	missense	c.418	p.R140W	0.928	pfam_Maf1,pirsf_Maf1	pfam_Maf1,pirsf_Maf1	-	no_errors	MAF1	HGNC	ENSG00000179632				47	0	0	28	6	17.6471
TONSL	0	genome.wustl.edu	37	8	145665463	145665463	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	145665463	145665463	G	A	SNP	TONSL	ENST00000409379	human	ensembl	74_37	-1	known	missense	c.1421	p.A474V	0.001	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_TPR_repeat,smart_Ankyrin_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TONSL	HGNC	ENSG00000160949				22	0	0	23	4	14.8148
RECQL4	0	genome.wustl.edu	37	8	145739054	145739054	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	145739054	145739054	C	T	SNP	RECQL4	ENST00000428558	human	ensembl	74_37	-1	known	missense	c.2101	p.D701N	0.999	superfamily_P-loop_NTPase,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_DNA_rep_checkpnt_protein,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	RECQL4	HGNC	ENSG00000160957				8	0	0	6	5	45.4545
ARHGAP39	0	genome.wustl.edu	37	8	145770858	145770858	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	145770858	145770858	C	T	SNP	ARHGAP39	ENST00000377307	human	ensembl	74_37	-1	known	missense	c.2296	p.V766M	0.997	pfam_MyTH4_dom,smart_MyTH4_dom,pfscan_MyTH4_dom	pfam_RhoGAP_dom,pfam_MyTH4_dom,superfamily_Rho_GTPase_activation_prot,superfamily_WW_dom,smart_WW_dom,smart_MyTH4_dom,smart_RhoGAP_dom,pfscan_MyTH4_dom,pfscan_WW_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP39	HGNC	ENSG00000147799				30	0	0	31	5	13.8889
DLGAP2	0	genome.wustl.edu	37	8	1497706	1497706	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	1497706	1497706	G	A	SNP	DLGAP2	ENST00000421627	human	ensembl	74_37	+1	known	missense	c.847	p.A283T	0.087	NULL	pfam_GKAP	-	no_errors	DLGAP2	HGNC	ENSG00000198010				28	0	0	23	4	14.8148
TUSC3	0	genome.wustl.edu	37	8	15508247	15508247	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	15508247	15508247	G	A	SNP	TUSC3	ENST00000503731	human	ensembl	74_37	+1	known	missense	c.350	p.R117H	1.000	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	pfam_OligosaccharylTrfase_OST3/OST6,pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TUSC3	HGNC	ENSG00000104723				198	0	0	180	13	6.73575
CNOT7	0	genome.wustl.edu	37	8	17092325	17092325	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	17092325	17092325	T	C	SNP	CNOT7	ENST00000361272	human	ensembl	74_37	-1	known	missense	c.518	p.N173S	1.000	pfam_RNase_CAF1,superfamily_RNaseH-like_dom	pfam_RNase_CAF1,superfamily_RNaseH-like_dom	-	no_errors	CNOT7	HGNC	ENSG00000198791				105	0	0	87	9	9.375
PCM1	0	genome.wustl.edu	37	8	17824576	17824576	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	17824576	17824576	G	A	SNP	PCM1	ENST00000325083	human	ensembl	74_37	+1	known	silent	c.3309	p.S1103	0.985	NULL	NULL	-	no_errors	PCM1	HGNC	ENSG00000078674				23	0	0	21	6	22.2222
ARHGEF10	0	genome.wustl.edu	37	8	1814720	1814720	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	1814720	1814720	G	A	SNP	ARHGEF10	ENST00000398564	human	ensembl	74_37	+1	known	missense	c.649	p.A217T	1.000	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF10	HGNC	ENSG00000104728				47	0	0	46	4	8
ARHGEF10	0	genome.wustl.edu	37	8	1817418	1817418	+	Splice_Site	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	1817418	1817418	T	C	SNP	ARHGEF10	ENST00000398564	human	ensembl	74_37	+1	known	splice_site	c.754+2	e7+2	1.000	-	-	-	no_errors	ARHGEF10	HGNC	ENSG00000104728				63	0	0	62	11	15.0685
PSD3	0	genome.wustl.edu	37	8	18725364	18725364	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	18725364	18725364	C	T	SNP	PSD3	ENST00000440756	human	ensembl	74_37	-1	known	missense	c.1454	p.R485H	1.000	NULL	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom	-	no_errors	PSD3	HGNC	ENSG00000156011				171	0	0	148	30	16.8539
CSGALNACT1	0	genome.wustl.edu	37	8	19263549	19263549	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	19263549	19263549	G	A	SNP	CSGALNACT1	ENST00000311540	human	ensembl	74_37	-1	known	silent	c.1341	p.G447	0.015	pfam_Chond_GalNAc	pfam_Chond_GalNAc	-	no_errors	CSGALNACT1	HGNC	ENSG00000147408				106	0	0	106	6	5.35714
CSGALNACT1	0	genome.wustl.edu	37	8	19362852	19362852	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	19362852	19362852	C	T	SNP	CSGALNACT1	ENST00000311540	human	ensembl	74_37	-1	known	missense	c.494	p.R165H	1.000	NULL	pfam_Chond_GalNAc	-	no_errors	CSGALNACT1	HGNC	ENSG00000147408				44	0	0	29	11	27.5
SLC18A1	0	genome.wustl.edu	37	8	20008198	20008198	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	20008198	20008198	A	G	SNP	SLC18A1	ENST00000276373	human	ensembl	74_37	-1	known	missense	c.1073	p.V358A	0.006	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Multidrug-R	-	no_errors	SLC18A1	HGNC	ENSG00000036565				193	0	0	120	25	17.2414
LZTS1	0	genome.wustl.edu	37	8	20107710	20107710	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	20107710	20107710	G	A	SNP	LZTS1	ENST00000265801	human	ensembl	74_37	-1	known	silent	c.1314	p.G438	0.069	NULL	NULL	-	no_errors	LZTS1	HGNC	ENSG00000061337				76	0	0	64	14	17.9487
HR	0	genome.wustl.edu	37	8	21986447	21986447	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	21986447	21986447	C	A	SNP	HR	ENST00000381418	human	ensembl	74_37	-1	known	missense	c.237	p.E79D	0.854	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	HR	HGNC	ENSG00000168453				44	0	0	26	9	25.7143
BMP1	0	genome.wustl.edu	37	8	22053019	22053019	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	22053019	22053019	C	T	SNP	BMP1	ENST00000306385	human	ensembl	74_37	+1	known	missense	c.1684	p.R562W	1.000	pirsf_BMP_1/tolloid-like,pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pirsf_BMP_1/tolloid-like,pfam_CUB_dom,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,smart_Peptidase_Metallo,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,prints_Peptidase_M12A,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	BMP1	HGNC	ENSG00000168487				32	0	0	27	6	18.1818
ENTPD4	0	genome.wustl.edu	37	8	23294525	23294525	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	23294525	23294525	G	A	SNP	ENTPD4	ENST00000358689	human	ensembl	74_37	-1	known	silent	c.1296	p.S432	0.247	pfam_GDA1_CD39_NTPase	pfam_GDA1_CD39_NTPase	-	no_errors	ENTPD4	HGNC	ENSG00000197217				109	1	0.909091	85	11	11.4583
ENTPD4	0	genome.wustl.edu	37	8	23299095	23299095	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	23299095	23299095	G	A	SNP	ENTPD4	ENST00000358689	human	ensembl	74_37	-1	known	missense	c.869	p.A290V	1.000	pfam_GDA1_CD39_NTPase	pfam_GDA1_CD39_NTPase	-	no_errors	ENTPD4	HGNC	ENSG00000197217				133	1	0.746269	64	48	42.8571
STC1	0	genome.wustl.edu	37	8	23702305	23702305	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	23702305	23702305	C	T	SNP	STC1	ENST00000290271	human	ensembl	74_37	-1	known	missense	c.722	p.R241H	1.000	NULL	pfam_Stanniocalcin	-	no_errors	STC1	HGNC	ENSG00000159167				53	0	0	47	8	14.5455
ADAM28	0	genome.wustl.edu	37	8	24211298	24211298	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	24211298	24211298	G	A	SNP	ADAM28	ENST00000265769	human	ensembl	74_37	+1	known	missense	c.2260	p.A754T	0.004	NULL	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM28	HGNC	ENSG00000042980				185	0	0	155	20	11.4286
NEFM	0	genome.wustl.edu	37	8	24771638	24771638	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	24771638	24771638	G	A	SNP	NEFM	ENST00000221166	human	ensembl	74_37	+1	known	missense	c.332	p.R111H	1.000	pfam_IF	pfam_IF,pfam_Intermed_filament_DNA-bd,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	NEFM	HGNC	ENSG00000104722				25	0	0	19	11	36.6667
NEFM	0	genome.wustl.edu	37	8	24771747	24771747	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	24771747	24771747	C	T	SNP	NEFM	ENST00000221166	human	ensembl	74_37	+1	known	silent	c.441	p.G147	0.999	pfam_IF	pfam_IF,pfam_Intermed_filament_DNA-bd,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	NEFM	HGNC	ENSG00000104722				15	0	0	5	5	50
DOCK5	0	genome.wustl.edu	37	8	25209257	25209257	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	25209257	25209257	C	T	SNP	DOCK5	ENST00000276440	human	ensembl	74_37	+1	known	missense	c.2765	p.A922V	0.000	superfamily_ARM-type_fold	pfam_DOCK_C,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK5	HGNC	ENSG00000147459				37	0	0	23	5	17.8571
EBF2	0	genome.wustl.edu	37	8	25708132	25708132	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	25708132	25708132	G	A	SNP	EBF2	ENST00000520164	human	ensembl	74_37	-1	known	silent	c.1674	p.S558	0.998	NULL	pfam_IPT,superfamily_Ig_E-set,smart_IPT	-	no_errors	EBF2	HGNC	ENSG00000221818				88	0	0	62	17	21.519
ADRA1A	0	genome.wustl.edu	37	8	26722237	26722237	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	26722237	26722237	C	T	SNP	ADRA1A	ENST00000380586	human	ensembl	74_37	-1	known	missense	c.250	p.A84T	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_ADR_fam	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_ADRA1A_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam	-	no_errors	ADRA1A	HGNC	ENSG00000120907				157	0	0	106	26	19.697
ADRA1A	0	genome.wustl.edu	37	8	26722276	26722276	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	26722276	26722276	C	T	SNP	ADRA1A	ENST00000380586	human	ensembl	74_37	-1	known	missense	c.211	p.A71T	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_ADRA1A_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam	-	no_errors	ADRA1A	HGNC	ENSG00000120907				206	1	0.483092	144	30	17.2414
NUGGC	0	genome.wustl.edu	37	8	27922179	27922179	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	27922179	27922179	C	T	SNP	NUGGC	ENST00000341513	human	ensembl	74_37	-1	known	missense	c.781	p.A261T	0.000	pfam_Dynamin_GTPase,superfamily_P-loop_NTPase	pfam_Dynamin_GTPase,superfamily_P-loop_NTPase	-	no_errors	NUGGC	HGNC	ENSG00000189233				53	0	0	39	5	11.3636
ZNF395	0	genome.wustl.edu	37	8	28214286	28214286	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	28214286	28214286	C	T	SNP	ZNF395	ENST00000344423	human	ensembl	74_37	-1	known	missense	c.484	p.A162T	0.977	NULL	pfscan_Znf_C2H2	-	no_errors	ZNF395	HGNC	ENSG00000186918				28	0	0	14	4	22.2222
FZD3	0	genome.wustl.edu	37	8	28385115	28385115	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	28385115	28385115	G	T	SNP	FZD3	ENST00000240093	human	ensembl	74_37	+1	known	nonsense	c.838	p.G280*	1.000	pfam_Frizzled,pfscan_GPCR_2-like	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD3	HGNC	ENSG00000104290				132	1	0.75188	130	8	5.7971
FZD3	0	genome.wustl.edu	37	8	28385354	28385354	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	28385354	28385354	C	T	SNP	FZD3	ENST00000240093	human	ensembl	74_37	+1	known	silent	c.1077	p.G359	1.000	pfam_Frizzled,pfscan_GPCR_2-like	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD3	HGNC	ENSG00000104290				98	0	0	86	6	6.52174
EXTL3	0	genome.wustl.edu	37	8	28575031	28575031	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	28575031	28575031	G	A	SNP	EXTL3	ENST00000220562	human	ensembl	74_37	+1	known	silent	c.1455	p.V485	1.000	pfam_Exostosin	pfam_HexNAc_Trfase_a,pfam_Exostosin	-	no_errors	EXTL3	HGNC	ENSG00000012232				45	0	0	50	8	13.7931
EXTL3	0	genome.wustl.edu	37	8	28600685	28600685	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	28600685	28600685	C	T	SNP	EXTL3	ENST00000220562	human	ensembl	74_37	+1	known	missense	c.2504	p.A835V	1.000	pfam_HexNAc_Trfase_a	pfam_HexNAc_Trfase_a,pfam_Exostosin	-	no_errors	EXTL3	HGNC	ENSG00000012232				144	0	0	113	24	17.5182
HMBOX1	0	genome.wustl.edu	37	8	28876412	28876412	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	28876412	28876412	G	A	SNP	HMBOX1	ENST00000444075	human	ensembl	74_37	+1	known	missense	c.833	p.C278Y	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_HNF-1_N,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	HMBOX1	HGNC	ENSG00000147421				87	0	0	68	16	19.0476
KIF13B	0	genome.wustl.edu	37	8	28967445	28967445	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	28967445	28967445	C	T	SNP	KIF13B	ENST00000524189	human	ensembl	74_37	-1	known	missense	c.4073	p.R1358H	1.000	NULL	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_CAP-Gly_domain,pfam_KIF1B,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_CAP-Gly_domain,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_CAP-Gly_domain,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF13B	HGNC	ENSG00000197892				22	0	0	20	4	16.6667
GSR	0	genome.wustl.edu	37	8	30565642	30565642	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	30565642	30565642	G	A	SNP	GSR	ENST00000221130	human	ensembl	74_37	-1	known	missense	c.439	p.R147W	1.000	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,tigrfam_Glutathione_Rdtase_euk/bac	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_nucl-diS_OxRdtase_dimer,pfam_Pyr_OxRdtase_NAD-bd_dom,superfamily_FAD/NAD-linked_Rdtase_dimer,prints_FAD_pyr_nucl-diS_OxRdtase,prints_Hg_reductase,prints_Pyridine_nuc-diS_OxRdtase_2,tigrfam_Glutathione_Rdtase_euk/bac	-	no_errors	GSR	HGNC	ENSG00000104687				94	0	0	90	10	10
PPP2CB	0	genome.wustl.edu	37	8	30651531	30651531	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	30651531	30651531	G	A	SNP	PPP2CB	ENST00000221138	human	ensembl	74_37	-1	known	missense	c.640	p.R214C	1.000	pfam_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase	pfam_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP2CB	HGNC	ENSG00000104695				28	0	0	23	5	17.8571
UNC5D	0	genome.wustl.edu	37	8	35544118	35544118	+	Silent	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	35544118	35544118	A	G	SNP	UNC5D	ENST00000404895	human	ensembl	74_37	+1	known	silent	c.975	p.E325	0.992	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ZU5,pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,pfam_Death_domain,pfam_Immunoglobulin,superfamily_DEATH-like_dom,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death_domain,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like_dom	-	no_errors	UNC5D	HGNC	ENSG00000156687				34	0	0	40	8	16.6667
KCNU1	0	genome.wustl.edu	37	8	36780102	36780102	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	36780102	36780102	G	A	SNP	KCNU1	ENST00000399881	human	ensembl	74_37	+1	known	silent	c.2691	p.T897	0.414	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_Ca-activ_BK_asu	-	no_errors	KCNU1	HGNC	ENSG00000215262				64	0	0	47	8	14.5455
RAB11FIP1	0	genome.wustl.edu	37	8	37730004	37730004	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	37730004	37730004	C	T	SNP	RAB11FIP1	ENST00000330843	human	ensembl	74_37	-1	known	silent	c.2316	p.A772	0.000	NULL	pfam_Rab-bd_FIP-RBD,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	RAB11FIP1	HGNC	ENSG00000156675				83	0	0	57	6	9.52381
EIF4EBP1	0	genome.wustl.edu	37	8	37914773	37914773	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	37914773	37914773	C	T	SNP	EIF4EBP1	ENST00000338825	human	ensembl	74_37	+1	known	missense	c.320	p.A107V	0.008	pfam_EIF4EBP	pfam_EIF4EBP	-	no_errors	EIF4EBP1	HGNC	ENSG00000187840				42	0	0	31	10	24.3902
FGFR1	0	genome.wustl.edu	37	8	38271528	38271528	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	38271528	38271528	G	A	SNP	FGFR1	ENST00000425967	human	ensembl	74_37	-1	known	missense	c.2293	p.R765W	1.000	pirsf_FGF_rcpt_fam,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_FGF_rcpt_fam,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	FGFR1	HGNC	ENSG00000077782				28	0	0	22	8	26.6667
C8orf86	0	genome.wustl.edu	37	8	38386081	38386081	+	Silent	SNP	A	A	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	38386081	38386081	A	C	SNP	C8orf86	ENST00000358138	human	ensembl	74_37	-1	known	silent	c.75	p.L25	0.000	NULL	NULL	-	no_errors	C8orf86	HGNC	ENSG00000196166				61	0	0	63	9	12.5
TACC1	0	genome.wustl.edu	37	8	38677330	38677330	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	38677330	38677330	G	A	SNP	TACC1	ENST00000379931	human	ensembl	74_37	+1	known	missense	c.568	p.A190T	0.000	NULL	pfam_TACC	-	no_errors	TACC1	HGNC	ENSG00000147526				78	0	0	59	13	18.0556
PLEKHA2	0	genome.wustl.edu	37	8	38810831	38810831	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	38810831	38810831	G	A	SNP	PLEKHA2	ENST00000420274	human	ensembl	74_37	+1	known	missense	c.719	p.R240H	0.998	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA2	HGNC	ENSG00000169499				178	0	0	163	33	16.8367
HTRA4	0	genome.wustl.edu	37	8	38832617	38832617	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	38832617	38832617	G	A	SNP	HTRA4	ENST00000302495	human	ensembl	74_37	+1	known	silent	c.534	p.A178	0.965	superfamily_Trypsin-like_Pept_dom	pfam_Peptidase_S1,pfam_PDZ,pfam_Kazal_dom,superfamily_Trypsin-like_Pept_dom,superfamily_PDZ,smart_Kazal_dom,smart_PDZ,pfscan_PDZ,prints_Peptidase_S1C	-	no_errors	HTRA4	HGNC	ENSG00000169495				92	0	0	66	21	24.1379
HTRA4	0	genome.wustl.edu	37	8	38839212	38839212	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	38839212	38839212	A	G	SNP	HTRA4	ENST00000302495	human	ensembl	74_37	+1	known	missense	c.1040	p.D347G	0.894	superfamily_Trypsin-like_Pept_dom,prints_Peptidase_S1C	pfam_Peptidase_S1,pfam_PDZ,pfam_Kazal_dom,superfamily_Trypsin-like_Pept_dom,superfamily_PDZ,smart_Kazal_dom,smart_PDZ,pfscan_PDZ,prints_Peptidase_S1C	-	no_errors	HTRA4	HGNC	ENSG00000169495				127	0	0	112	6	5.08475
FBXO25	0	genome.wustl.edu	37	8	401417	401417	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	401417	401417	C	T	SNP	FBXO25	ENST00000276326	human	ensembl	74_37	+1	known	silent	c.624	p.A208	0.177	NULL	superfamily_F-box_dom	-	no_errors	FBXO25	HGNC	ENSG00000147364				80	0	0	74	5	6.32911
ANK1	0	genome.wustl.edu	37	8	41553956	41553956	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	41553956	41553956	G	A	SNP	ANK1	ENST00000396942	human	ensembl	74_37	-1	known	missense	c.2885	p.P962L	0.998	pfam_ZU5,smart_ZU5,pfscan_ZU5	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK1	HGNC	ENSG00000029534				33	0	0	25	6	19.3548
KAT6A	0	genome.wustl.edu	37	8	41790423	41790423	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	41790423	41790423	C	T	SNP	KAT6A	ENST00000265713	human	ensembl	74_37	-1	known	missense	c.5315	p.S1772N	1.000	NULL	pfam_MOZ_SAS,pfam_Znf_PHD-finger,superfamily_Acyl_CoA_acyltransferase,superfamily_Znf_FYVE_PHD,smart_Histone_H1/H5_H15,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	KAT6A	HGNC	ENSG00000083168				215	0	0	181	15	7.65306
KAT6A	0	genome.wustl.edu	37	8	41791549	41791549	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	41791549	41791549	C	T	SNP	KAT6A	ENST00000265713	human	ensembl	74_37	-1	known	missense	c.4189	p.E1397K	0.999	NULL	pfam_MOZ_SAS,pfam_Znf_PHD-finger,superfamily_Acyl_CoA_acyltransferase,superfamily_Znf_FYVE_PHD,smart_Histone_H1/H5_H15,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	KAT6A	HGNC	ENSG00000083168				79	0	0	78	8	9.30233
PLAT	0	genome.wustl.edu	37	8	42038027	42038027	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	42038027	42038027	C	T	SNP	PLAT	ENST00000220809	human	ensembl	74_37	-1	known	missense	c.1066	p.A356T	0.997	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	pfam_Peptidase_S1,pfam_Kringle,pfam_Fibronectin_type1,pfam_EG-like_dom,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_Fibronectin_type1,smart_Kringle,smart_Peptidase_S1,pfscan_EG-like_dom,pfscan_Fibronectin_type1,pfscan_Kringle,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	PLAT	HGNC	ENSG00000104368				107	0	0	79	16	16.8421
CHRNB3	0	genome.wustl.edu	37	8	42587066	42587066	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	42587066	42587066	G	A	SNP	CHRNB3	ENST00000289957	human	ensembl	74_37	+1	known	missense	c.616	p.A206T	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNB3	HGNC	ENSG00000147432				123	0	0	100	7	6.54206
CHRNB3	0	genome.wustl.edu	37	8	42587142	42587142	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	42587142	42587142	G	A	SNP	CHRNB3	ENST00000289957	human	ensembl	74_37	+1	known	missense	c.692	p.R231H	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Neur_channel,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNB3	HGNC	ENSG00000147432				71	0	0	56	9	13.8462
POMK	0	genome.wustl.edu	37	8	42958728	42958728	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	42958728	42958728	G	A	SNP	POMK	ENST00000331373	human	ensembl	74_37	+1	known	missense	c.37	p.A13T	0.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,pfscan_Prot_kinase_dom	-	no_errors	POMK	HGNC	ENSG00000185900				86	0	0	65	26	28.5714
POTEA	0	genome.wustl.edu	37	8	43147674	43147674	+	RNA	SNP	A	A	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	43147674	43147674	A	C	SNP	POTEA	ENST00000522175	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	POTEA	HGNC	ENSG00000188877				66	0	0	62	11	15.0685
SPIDR	0	genome.wustl.edu	37	8	48648041	48648041	+	Silent	SNP	A	A	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	48648041	48648041	A	C	SNP	SPIDR	ENST00000518074	human	ensembl	74_37	+1	putative	silent	c.2598	p.A866	0.000	NULL	NULL	-	no_errors	SPIDR	HGNC	ENSG00000164808				45	0	0	30	3	9.09091
PRKDC	0	genome.wustl.edu	37	8	48713457	48713457	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	48713457	48713457	G	A	SNP	PRKDC	ENST00000314191	human	ensembl	74_37	-1	known	missense	c.10010	p.A3337V	0.997	pfam_PIK-rel_kinase_FAT,pfscan_PIK_FAT	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729				44	0	0	32	3	8.57143
PRKDC	0	genome.wustl.edu	37	8	48772316	48772316	+	Silent	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	48772316	48772316	A	G	SNP	PRKDC	ENST00000314191	human	ensembl	74_37	-1	known	silent	c.6060	p.G2020	0.542	pfam_NUC194,superfamily_ARM-type_fold	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729				82	0	0	70	13	15.6627
EFCAB1	0	genome.wustl.edu	37	8	49643974	49643974	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	49643974	49643974	A	T	SNP	EFCAB1	ENST00000262103	human	ensembl	74_37	-1	known	missense	c.147	p.D49E	1.000	NULL	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	-	no_errors	EFCAB1	HGNC	ENSG00000034239				77	0	0	66	18	21.4286
SNAI2	0	genome.wustl.edu	37	8	49833817	49833817	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	49833817	49833817	C	T	SNP	SNAI2	ENST00000020945	human	ensembl	74_37	-1	known	missense	c.8	p.R3H	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SNAI2	HGNC	ENSG00000019549				66	0	0	68	5	6.84932
PXDNL	0	genome.wustl.edu	37	8	52320786	52320786	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	52320786	52320786	G	A	SNP	PXDNL	ENST00000356297	human	ensembl	74_37	-1	known	missense	c.3398	p.A1133V	0.987	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDNL	HGNC	ENSG00000147485				88	0	0	63	15	19.2308
ATP6V1H	0	genome.wustl.edu	37	8	54628573	54628573	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	54628573	54628573	C	T	SNP	ATP6V1H	ENST00000359530	human	ensembl	74_37	-1	known	missense	c.1403	p.G468D	0.999	pirsf_ATPase_V1-cplx_hsu	pfam_ATPase_V1-cplx_hsu,pfam_ATPase_V1-cplx_hsu_C,superfamily_ARM-type_fold,pirsf_ATPase_V1-cplx_hsu	-	no_errors	ATP6V1H	HGNC	ENSG00000047249				21	0	0	12	6	33.3333
RP1	0	genome.wustl.edu	37	8	55541823	55541823	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	55541823	55541823	G	A	SNP	RP1	ENST00000220676	human	ensembl	74_37	+1	known	missense	c.5381	p.G1794D	0.089	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237				52	0	0	33	7	17.5
XKR4	0	genome.wustl.edu	37	8	56436092	56436092	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	56436092	56436092	A	G	SNP	XKR4	ENST00000327381	human	ensembl	74_37	+1	known	missense	c.1259	p.E420G	1.000	pfam_Transport_prot_XK	pfam_Transport_prot_XK	-	no_errors	XKR4	HGNC	ENSG00000206579				191	1	0.520833	166	38	18.6275
PLAG1	0	genome.wustl.edu	37	8	57078977	57078977	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	57078977	57078977	C	T	SNP	PLAG1	ENST00000316981	human	ensembl	74_37	-1	known	missense	c.1328	p.S443N	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	PLAG1	HGNC	ENSG00000181690				124	0	0	91	14	13.3333
PLAG1	0	genome.wustl.edu	37	8	57079635	57079635	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	57079635	57079635	G	A	SNP	PLAG1	ENST00000316981	human	ensembl	74_37	-1	known	nonsense	c.670	p.R224*	0.957	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	PLAG1	HGNC	ENSG00000181690				113	0	0	92	17	15.5963
PENK	0	genome.wustl.edu	37	8	57358283	57358283	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	57358283	57358283	A	G	SNP	PENK	ENST00000518770	human	ensembl	74_37	-1	putative	missense	c.230	p.V77A	0.000	NULL	pfam_Opioid_neupept,prints_Proenkphlin_A	-	no_errors	PENK	HGNC	ENSG00000181195				13	0	0	10	3	23.0769
FAM110B	0	genome.wustl.edu	37	8	59058997	59058997	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	59058997	59058997	G	A	SNP	FAM110B	ENST00000361488	human	ensembl	74_37	+1	known	missense	c.208	p.A70T	1.000	NULL	NULL	-	no_errors	FAM110B	HGNC	ENSG00000169122				18	0	0	23	9	28.125
NSMAF	0	genome.wustl.edu	37	8	59555553	59555553	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	59555553	59555553	G	A	SNP	NSMAF	ENST00000427130	human	ensembl	74_37	-1	known	missense	c.232	p.H78Y	0.000	NULL	pfam_BEACH_dom,pfam_WD40_repeat,pfam_GRAM,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,smart_GRAM,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NSMAF	HGNC	ENSG00000035681				100	0	0	69	20	22.4719
TOX	0	genome.wustl.edu	37	8	59728227	59728227	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	59728227	59728227	C	T	SNP	TOX	ENST00000361421	human	ensembl	74_37	-1	known	silent	c.1062	p.S354	0.000	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	TOX	HGNC	ENSG00000198846				54	0	0	44	10	18.5185
CHD7	0	genome.wustl.edu	37	8	61777937	61777937	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	61777937	61777937	C	T	SNP	CHD7	ENST00000423902	human	ensembl	74_37	+1	known	silent	c.8439	p.G2813	0.997	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD7	HGNC	ENSG00000171316				27	0	0	14	5	26.3158
ANGPT2	0	genome.wustl.edu	37	8	6360702	6360702	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	6360702	6360702	C	T	SNP	ANGPT2	ENST00000325203	human	ensembl	74_37	-1	known	missense	c.1411	p.G471S	1.000	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	ANGPT2	HGNC	ENSG00000091879				98	0	0	112	6	5.08475
ANGPT2	0	genome.wustl.edu	37	8	6371295	6371295	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	6371295	6371295	C	T	SNP	ANGPT2	ENST00000325203	human	ensembl	74_37	-1	known	missense	c.1103	p.R368H	0.127	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	ANGPT2	HGNC	ENSG00000091879				102	0	0	86	7	7.52688
YTHDF3	0	genome.wustl.edu	37	8	64099768	64099768	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	64099768	64099768	C	A	SNP	YTHDF3	ENST00000539294	human	ensembl	74_37	+1	known	missense	c.1196	p.A399D	1.000	NULL	pfam_YTH_domain,pfscan_YTH_domain	-	no_errors	YTHDF3	HGNC	ENSG00000185728				65	0	0	41	21	33.871
ANGPT2	0	genome.wustl.edu	37	8	6420295	6420295	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	6420295	6420295	C	T	SNP	ANGPT2	ENST00000325203	human	ensembl	74_37	-1	known	missense	c.161	p.R54H	1.000	NULL	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	ANGPT2	HGNC	ENSG00000091879				53	0	0	43	6	12.2449
AGPAT5	0	genome.wustl.edu	37	8	6614919	6614919	+	RNA	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	6614919	6614919	T	C	SNP	AGPAT5	ENST00000533159	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.001	-	-	-	no_errors	AGPAT5	HGNC	ENSG00000155189				52	0	0	43	10	18.8679
TRIM55	0	genome.wustl.edu	37	8	67061935	67061935	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	67061935	67061935	G	A	SNP	TRIM55	ENST00000315962	human	ensembl	74_37	+1	known	missense	c.659	p.G220D	0.998	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM55	HGNC	ENSG00000147573				89	0	0	79	17	17.7083
DEFB1	0	genome.wustl.edu	37	8	6728299	6728299	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	6728299	6728299	G	A	SNP	DEFB1	ENST00000297439	human	ensembl	74_37	-1	known	silent	c.111	p.C37	0.002	pfam_Defensin_beta-typ	pfam_Defensin_beta-typ	-	no_errors	DEFB1	HGNC	ENSG00000164825				67	0	0	47	6	11.3208
SGK3	0	genome.wustl.edu	37	8	67734620	67734620	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	67734620	67734620	G	T	SNP	SGK3	ENST00000345714	human	ensembl	74_37	+1	known	missense	c.343	p.A115S	1.000	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Phox,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_Phox,smart_Phox,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Phox,pfscan_Prot_kinase_dom	-	no_errors	SGK3	HGNC	ENSG00000104205				244	0	0	199	33	14.2241
ARFGEF1	0	genome.wustl.edu	37	8	68169965	68169965	+	Splice_Site	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	68169965	68169965	A	G	SNP	ARFGEF1	ENST00000262215	human	ensembl	74_37	-1	known	splice_site	c.2526+2	e17+2	1.000	-	-	-	no_errors	ARFGEF1	HGNC	ENSG00000066777				126	0	0	115	20	14.8148
PREX2	0	genome.wustl.edu	37	8	68956736	68956736	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	68956736	68956736	G	A	SNP	PREX2	ENST00000288368	human	ensembl	74_37	+1	known	missense	c.854	p.S285N	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889				99	0	0	83	21	20.1923
PREX2	0	genome.wustl.edu	37	8	69021701	69021701	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	69021701	69021701	G	A	SNP	PREX2	ENST00000288368	human	ensembl	74_37	+1	known	missense	c.2989	p.A997T	1.000	NULL	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889				78	0	0	63	18	22.2222
TRPA1	0	genome.wustl.edu	37	8	72968043	72968043	+	Silent	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	72968043	72968043	A	G	SNP	TRPA1	ENST00000262209	human	ensembl	74_37	-1	known	silent	c.1242	p.C414	0.939	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	TRPA1	HGNC	ENSG00000104321				59	0	0	41	11	21.1538
ZFHX4	0	genome.wustl.edu	37	8	77763549	77763549	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	77763549	77763549	C	T	SNP	ZFHX4	ENST00000521891	human	ensembl	74_37	+1	known	silent	c.4392	p.P1464	0.994	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656				58	0	0	46	11	19.2982
ZFHX4	0	genome.wustl.edu	37	8	77763597	77763597	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	77763597	77763597	C	A	SNP	ZFHX4	ENST00000521891	human	ensembl	74_37	+1	known	missense	c.4440	p.D1480E	0.998	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656				68	0	0	63	8	11.2676
ZFHX4	0	genome.wustl.edu	37	8	77766752	77766752	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	77766752	77766752	C	T	SNP	ZFHX4	ENST00000521891	human	ensembl	74_37	+1	known	missense	c.7595	p.P2532L	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656				207	0	0	174	24	12.1212
PKIA	0	genome.wustl.edu	37	8	79514053	79514053	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	79514053	79514053	C	T	SNP	PKIA	ENST00000352966	human	ensembl	74_37	+1	known	silent	c.228	p.S76	1.000	pirsf_cAMP_dep_PKI	pfam_cAMP_dep_PKI,pirsf_cAMP_dep_PKI	-	no_errors	PKIA	HGNC	ENSG00000171033				78	0	0	65	4	5.7971
FAM86B3P	0	genome.wustl.edu	37	8	8094771	8094771	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	8094771	8094771	C	T	SNP	FAM86B3P	ENST00000522601	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.986	-	-	-	no_errors	FAM86B3P	HGNC	ENSG00000173295				50	0	0	44	11	20
FAM86B3P	0	genome.wustl.edu	37	8	8098832	8098832	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	8098832	8098832	C	T	SNP	FAM86B3P	ENST00000310542	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.105	-	-	-	no_errors	FAM86B3P	HGNC	ENSG00000173295				37	0	0	30	4	11.7647
ZNF704	0	genome.wustl.edu	37	8	81577073	81577073	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	81577073	81577073	C	T	SNP	ZNF704	ENST00000327835	human	ensembl	74_37	-1	known	missense	c.904	p.V302M	1.000	NULL	pfscan_Znf_C2H2	-	no_errors	ZNF704	HGNC	ENSG00000164684				91	0	0	65	16	19.7531
FABP5	0	genome.wustl.edu	37	8	82195629	82195629	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	82195629	82195629	C	T	SNP	FABP5	ENST00000297258	human	ensembl	74_37	+1	known	silent	c.108	p.G36	0.001	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	-	no_errors	FABP5	HGNC	ENSG00000164687				47	0	0	29	5	14.7059
CA3	0	genome.wustl.edu	37	8	86357402	86357402	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	86357402	86357402	C	T	SNP	CA3	ENST00000285381	human	ensembl	74_37	+1	known	silent	c.462	p.G154	0.997	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA3	HGNC	ENSG00000164879				59	0	0	55	11	16.6667
WWP1	0	genome.wustl.edu	37	8	87393781	87393781	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	87393781	87393781	G	A	SNP	WWP1	ENST00000265428	human	ensembl	74_37	+1	known	missense	c.257	p.R86H	0.988	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_HECT,pfam_WW_dom,pfam_C2_dom,superfamily_HECT,superfamily_C2_dom,superfamily_WW_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_C2_dom,pfscan_WW_dom	-	no_errors	WWP1	HGNC	ENSG00000123124				94	0	0	59	36	37.8947
WWP1	0	genome.wustl.edu	37	8	87447904	87447904	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	87447904	87447904	C	T	SNP	WWP1	ENST00000265428	human	ensembl	74_37	+1	known	nonsense	c.1720	p.Q574*	1.000	superfamily_HECT	pfam_HECT,pfam_WW_dom,pfam_C2_dom,superfamily_HECT,superfamily_C2_dom,superfamily_WW_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_C2_dom,pfscan_WW_dom	-	no_errors	WWP1	HGNC	ENSG00000123124				113	0	0	123	11	8.20896
ERI1	0	genome.wustl.edu	37	8	8869247	8869247	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	8869247	8869247	G	A	SNP	ERI1	ENST00000250263	human	ensembl	74_37	+1	known	silent	c.483	p.T161	0.006	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	pfam_Exonuclease_RNaseT/DNA_pol3,pfam_SAP_dom,superfamily_RNaseH-like_dom,smart_SAP_dom,smart_Exonuclease,pfscan_SAP_dom	-	no_errors	ERI1	HGNC	ENSG00000104626				40	0	0	34	7	17.0732
OSGIN2	0	genome.wustl.edu	37	8	90937134	90937134	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	90937134	90937134	C	T	SNP	OSGIN2	ENST00000451899	human	ensembl	74_37	+1	known	missense	c.1024	p.R342C	0.976	NULL	NULL	-	no_errors	OSGIN2	HGNC	ENSG00000164823				186	0	0	145	24	14.2012
RUNX1T1	0	genome.wustl.edu	37	8	92998493	92998493	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	92998493	92998493	G	A	SNP	RUNX1T1	ENST00000436581	human	ensembl	74_37	-1	known	missense	c.1171	p.R391W	1.000	pfam_NHR2	pfam_NHR2,pfam_TAFH_NHR1,pfam_Znf_MYND,smart_TAFH_NHR1,pfscan_TAFH_NHR1,pfscan_Znf_MYND,prints_ETO,prints_MTG8	-	no_errors	RUNX1T1	HGNC	ENSG00000079102				114	0	0	123	9	6.81818
RUNX1T1	0	genome.wustl.edu	37	8	93017525	93017525	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	93017525	93017525	C	T	SNP	RUNX1T1	ENST00000436581	human	ensembl	74_37	-1	known	missense	c.592	p.A198T	1.000	pfam_TAFH_NHR1,smart_TAFH_NHR1,pfscan_TAFH_NHR1,prints_ETO	pfam_NHR2,pfam_TAFH_NHR1,pfam_Znf_MYND,smart_TAFH_NHR1,pfscan_TAFH_NHR1,pfscan_Znf_MYND,prints_ETO,prints_MTG8	-	no_errors	RUNX1T1	HGNC	ENSG00000079102				47	0	0	24	7	22.5806
CDH17	0	genome.wustl.edu	37	8	95189851	95189851	+	Silent	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	95189851	95189851	G	T	SNP	CDH17	ENST00000027335	human	ensembl	74_37	-1	known	silent	c.249	p.A83	0.040	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH17	HGNC	ENSG00000079112				154	0	0	131	7	5.07246
RAD54B	0	genome.wustl.edu	37	8	95423510	95423510	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	95423510	95423510	T	C	SNP	RAD54B	ENST00000336148	human	ensembl	74_37	-1	known	missense	c.338	p.K113R	0.009	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_HDA_complex_subunit-2/3,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	RAD54B	HGNC	ENSG00000197275				74	0	0	64	5	7.24638
FSBP	0	genome.wustl.edu	37	8	95448891	95448891	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	95448891	95448891	C	T	SNP	FSBP	ENST00000481490	human	ensembl	74_37	-1	known	missense	c.206	p.R69H	1.000	NULL	NULL	-	no_errors	FSBP	HGNC	ENSG00000265817				8	0	0	7	3	30
KIAA1429	0	genome.wustl.edu	37	8	95523709	95523709	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	95523709	95523709	G	A	SNP	KIAA1429	ENST00000297591	human	ensembl	74_37	-1	known	missense	c.3094	p.R1032C	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	KIAA1429	HGNC	ENSG00000164944				71	0	0	50	12	19.3548
TNKS	0	genome.wustl.edu	37	8	9567472	9567472	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	9567472	9567472	C	T	SNP	TNKS	ENST00000310430	human	ensembl	74_37	+1	known	missense	c.1586	p.A529V	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_SAM_2,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_Poly(ADP-ribose)pol_cat_dom,prints_Ankyrin_rpt	-	no_errors	TNKS	HGNC	ENSG00000173273				59	0	0	36	16	30.7692
ESRP1	0	genome.wustl.edu	37	8	95680362	95680362	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	95680362	95680362	G	A	SNP	ESRP1	ENST00000433389	human	ensembl	74_37	+1	known	missense	c.1117	p.A373T	1.000	smart_RRM_dom,pfscan_RRM_dom	superfamily_RNaseH-like_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	ESRP1	HGNC	ENSG00000104413				105	0	0	83	11	11.7021
INTS8	0	genome.wustl.edu	37	8	95886789	95886789	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	95886789	95886789	C	T	SNP	INTS8	ENST00000523731	human	ensembl	74_37	+1	known	nonsense	c.2647	p.R883*	0.999	NULL	NULL	-	no_errors	INTS8	HGNC	ENSG00000164941				28	0	0	37	7	15.9091
TNKS	0	genome.wustl.edu	37	8	9605598	9605598	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	9605598	9605598	C	T	SNP	TNKS	ENST00000310430	human	ensembl	74_37	+1	known	missense	c.2708	p.A903V	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_SAM_2,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_Poly(ADP-ribose)pol_cat_dom,prints_Ankyrin_rpt	-	no_errors	TNKS	HGNC	ENSG00000173273				105	0	0	102	12	10.5263
TNKS	0	genome.wustl.edu	37	8	9605648	9605648	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	9605648	9605648	G	A	SNP	TNKS	ENST00000310430	human	ensembl	74_37	+1	known	missense	c.2758	p.A920T	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_SAM_2,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_Poly(ADP-ribose)pol_cat_dom,prints_Ankyrin_rpt	-	no_errors	TNKS	HGNC	ENSG00000173273				75	0	0	53	11	17.1875
PLEKHF2	0	genome.wustl.edu	37	8	96166313	96166313	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	96166313	96166313	G	A	SNP	PLEKHF2	ENST00000315367	human	ensembl	74_37	+1	known	missense	c.41	p.R14H	1.000	NULL	pfam_Znf_FYVE,pfam_Pleckstrin_homology,superfamily_Znf_FYVE_PHD,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel	-	no_errors	PLEKHF2	HGNC	ENSG00000175895				102	0	0	88	27	23.4783
GDF6	0	genome.wustl.edu	37	8	97157065	97157065	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	97157065	97157065	T	C	SNP	GDF6	ENST00000287020	human	ensembl	74_37	-1	known	missense	c.1094	p.E365G	1.000	pfam_TGF-b_C,smart_TGF-b_C	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C	-	no_errors	GDF6	HGNC	ENSG00000156466				32	0	0	35	3	7.89474
GDF6	0	genome.wustl.edu	37	8	97157131	97157131	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	97157131	97157131	C	T	SNP	GDF6	ENST00000287020	human	ensembl	74_37	-1	known	missense	c.1028	p.G343D	1.000	NULL	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C	-	no_errors	GDF6	HGNC	ENSG00000156466				14	0	0	15	3	16.6667
TDRD7	0	genome.wustl.edu	37	9	100245401	100245401	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	100245401	100245401	G	A	SNP	TDRD7	ENST00000355295	human	ensembl	74_37	+1	known	missense	c.2683	p.A895T	0.000	NULL	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD7	HGNC	ENSG00000196116				67	0	0	32	12	27.2727
TSTD2	0	genome.wustl.edu	37	9	100365028	100365028	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	100365028	100365028	C	T	SNP	TSTD2	ENST00000341170	human	ensembl	74_37	-1	known	missense	c.1274	p.R425H	0.000	superfamily_Rhodanese-like_dom	pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom	-	no_errors	TSTD2	HGNC	ENSG00000136925				63	0	0	47	5	9.61538
NCBP1	0	genome.wustl.edu	37	9	100420938	100420938	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	100420938	100420938	C	T	SNP	NCBP1	ENST00000375147	human	ensembl	74_37	+1	known	missense	c.1390	p.R464C	1.000	pfam_MIF4G-like_typ-1,superfamily_ARM-type_fold	pfam_MIF4G-like_typ-2,pfam_MIF4G-like_typ-1,pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	-	no_errors	NCBP1	HGNC	ENSG00000136937				58	0	0	43	13	23.2143
C9orf156	0	genome.wustl.edu	37	9	100672390	100672390	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	100672390	100672390	C	T	SNP	C9orf156	ENST00000375119	human	ensembl	74_37	-1	known	silent	c.918	p.Q306	0.000	superfamily_UPF0066_YaeB	pfam_UPF0066,superfamily_UPF0066_YaeB,tigrfam_UPF0066	-	no_errors	C9orf156	HGNC	ENSG00000136932				47	0	0	30	9	23.0769
GABBR2	0	genome.wustl.edu	37	9	101340263	101340263	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	101340263	101340263	A	G	SNP	GABBR2	ENST00000259455	human	ensembl	74_37	-1	known	missense	c.413	p.V138A	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_GPCR_3_GABA_rcpt_B,prints_GPCR_3	pfam_GPCR_3_C,pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_GPCR_3_GABA_rcpt_B2,prints_GPCR_3_GABA_rcpt_B,prints_GPCR_3_GABA_rcpt_B1,prints_GPCR_3,pfscan_GPCR_3_C	-	no_errors	GABBR2	HGNC	ENSG00000136928				78	0	0	73	5	6.41026
INVS	0	genome.wustl.edu	37	9	103054969	103054969	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	103054969	103054969	C	T	SNP	INVS	ENST00000262457	human	ensembl	74_37	+1	known	silent	c.2430	p.R810	1.000	NULL	pfam_Ankyrin_rpt,pfam_IQ_motif_EF-hand-BS,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,smart_IQ_motif_EF-hand-BS,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Ankyrin_rpt	-	no_errors	INVS	HGNC	ENSG00000119509				55	0	0	30	8	21.0526
TEX10	0	genome.wustl.edu	37	9	103082626	103082626	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	103082626	103082626	A	G	SNP	TEX10	ENST00000374902	human	ensembl	74_37	-1	known	missense	c.2123	p.V708A	1.000	NULL	pfam_IPI1/TEX10,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	TEX10	HGNC	ENSG00000136891				34	0	0	46	4	8
LPPR1	0	genome.wustl.edu	37	9	104079735	104079735	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	104079735	104079735	C	A	SNP	LPPR1	ENST00000374874	human	ensembl	74_37	+1	known	missense	c.902	p.A301D	1.000	NULL	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	LPPR1	Uniprot_gn	ENSG00000148123				153	0	0	103	37	26.4286
BAAT	0	genome.wustl.edu	37	9	104125184	104125184	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	104125184	104125184	G	A	SNP	BAAT	ENST00000259407	human	ensembl	74_37	-1	known	silent	c.783	p.N261	0.787	pfam_BAAT_C,pirsf_Acyl-CoA_thioEstase_long-chain	pfam_BAAT_C,pfam_Thio_Ohase/aa_AcTrfase,pirsf_Acyl-CoA_thioEstase_long-chain	-	no_errors	BAAT	HGNC	ENSG00000136881				149	0	0	132	9	6.38298
RNF20	0	genome.wustl.edu	37	9	104302555	104302555	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	104302555	104302555	C	T	SNP	RNF20	ENST00000389120	human	ensembl	74_37	+1	known	missense	c.200	p.A67V	1.000	NULL	superfamily_STAT_TF_coiled-coil,superfamily_Prefoldin,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF20	HGNC	ENSG00000155827				124	0	0	68	17	20
TMEM38B	0	genome.wustl.edu	37	9	108457045	108457045	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	108457045	108457045	G	A	SNP	TMEM38B	ENST00000374692	human	ensembl	74_37	+1	known	missense	c.104	p.R35H	0.003	pfam_TRIC_channel	pfam_TRIC_channel	-	no_errors	TMEM38B	HGNC	ENSG00000095209				36	0	0	31	7	18.4211
ZNF462	0	genome.wustl.edu	37	9	109691644	109691644	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	109691644	109691644	G	A	SNP	ZNF462	ENST00000457913	human	ensembl	74_37	+1	known	silent	c.5451	p.K1817	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF462	HGNC	ENSG00000148143				128	0	0	85	6	6.59341
IKBKAP	0	genome.wustl.edu	37	9	111659242	111659242	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	111659242	111659242	C	T	SNP	IKBKAP	ENST00000374647	human	ensembl	74_37	-1	known	missense	c.2578	p.E860K	1.000	pfam_IKI3,pirsf_IKI3	pfam_IKI3,superfamily_ARM-type_fold,superfamily_UBA-like,pirsf_IKI3	-	no_errors	IKBKAP	HGNC	ENSG00000070061				102	1	0.970874	73	30	29.1262
EPB41L4B	0	genome.wustl.edu	37	9	111947811	111947811	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	111947811	111947811	C	A	SNP	EPB41L4B	ENST00000374566	human	ensembl	74_37	-1	known	missense	c.2376	p.E792D	1.000	NULL	pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L4B	HGNC	ENSG00000095203				47	0	0	29	10	25.641
EPB41L4B	0	genome.wustl.edu	37	9	112042125	112042125	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	112042125	112042125	A	C	SNP	EPB41L4B	ENST00000374566	human	ensembl	74_37	-1	known	missense	c.383	p.L128R	1.000	pfam_FERM_N,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam	pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L4B	HGNC	ENSG00000095203				66	0	0	52	20	27.7778
PALM2-AKAP2	0	genome.wustl.edu	37	9	112899061	112899061	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	112899061	112899061	C	T	SNP	PALM2-AKAP2	ENST00000374530	human	ensembl	74_37	+1	known	missense	c.1237	p.R413C	1.000	NULL	pfam_Paralemmin,pfam_RII_binding_1	-	no_errors	PALM2-AKAP2	HGNC	ENSG00000157654				76	0	0	53	19	26.3889
SVEP1	0	genome.wustl.edu	37	9	113168502	113168502	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	113168502	113168502	C	T	SNP	SVEP1	ENST00000401783	human	ensembl	74_37	-1	known	silent	c.9378	p.P3126	0.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_EG-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Growth_fac_rcpt_N_dom,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124				153	0	0	123	10	7.5188
SVEP1	0	genome.wustl.edu	37	9	113261516	113261516	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	113261516	113261516	G	A	SNP	SVEP1	ENST00000401783	human	ensembl	74_37	-1	known	missense	c.1486	p.R496C	0.997	superfamily_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_EG-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Growth_fac_rcpt_N_dom,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124				48	0	0	31	13	29.5455
LPAR1	0	genome.wustl.edu	37	9	113637839	113637839	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	113637839	113637839	G	A	SNP	LPAR1	ENST00000538760	human	ensembl	74_37	-1	known	silent	c.960	p.S320	1.000	prints_LPA_rcpt_EDG2,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_LPA_rcpt_EDG2,prints_LPA_rcpt,prints_GPCR_Rhodpsn	-	no_errors	LPAR1	HGNC	ENSG00000198121				124	0	0	59	25	29.7619
LPAR1	0	genome.wustl.edu	37	9	113704425	113704425	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	113704425	113704425	C	A	SNP	LPAR1	ENST00000538760	human	ensembl	74_37	-1	known	missense	c.72	p.Q24H	1.000	prints_LPA_rcpt_EDG2	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_LPA_rcpt_EDG2,prints_LPA_rcpt,prints_GPCR_Rhodpsn	-	no_errors	LPAR1	HGNC	ENSG00000198121				89	0	0	78	24	23.5294
KIAA1958	0	genome.wustl.edu	37	9	115336875	115336875	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	115336875	115336875	G	A	SNP	KIAA1958	ENST00000536272	human	ensembl	74_37	+1	known	missense	c.515	p.R172H	1.000	NULL	pfam_DUF3504,superfamily_Integrase_Lambda-type_N	-	no_errors	KIAA1958	HGNC	ENSG00000165185				102	1	0.970874	107	11	9.32203
FKBP15	0	genome.wustl.edu	37	9	115959248	115959248	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	115959248	115959248	C	T	SNP	FKBP15	ENST00000238256	human	ensembl	74_37	-1	known	silent	c.828	p.T276	0.069	pfam_PPIase_FKBP_dom,pfscan_PPIase_FKBP_dom	pfam_PPIase_FKBP_dom,superfamily_Regulat_G_prot_signal_superfam,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP15	HGNC	ENSG00000119321				111	0	0	82	5	5.74713
PRPF4	0	genome.wustl.edu	37	9	116053015	116053015	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	116053015	116053015	G	T	SNP	PRPF4	ENST00000374198	human	ensembl	74_37	+1	known	missense	c.1184	p.R395L	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_PRP4-like,superfamily_WD40_repeat_dom,smart_SFM,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PRPF4	HGNC	ENSG00000136875				96	0	0	65	17	20.7317
WDR31	0	genome.wustl.edu	37	9	116080824	116080824	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	116080824	116080824	C	T	SNP	WDR31	ENST00000374193	human	ensembl	74_37	-1	known	missense	c.874	p.A292T	0.001	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR31	HGNC	ENSG00000148225				139	0	0	102	28	21.5385
BSPRY	0	genome.wustl.edu	37	9	116130628	116130628	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	116130628	116130628	A	G	SNP	BSPRY	ENST00000374183	human	ensembl	74_37	+1	known	missense	c.647	p.Q216R	0.055	pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl_sf,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	-	no_errors	BSPRY	HGNC	ENSG00000119411				108	0	0	79	23	22.549
ZNF618	0	genome.wustl.edu	37	9	116812207	116812207	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	116812207	116812207	C	T	SNP	ZNF618	ENST00000374126	human	ensembl	74_37	+1	known	silent	c.2625	p.Y875	0.580	superfamily_RNaseH-like_dom	superfamily_RNaseH-like_dom,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF618	HGNC	ENSG00000157657				86	0	0	77	5	6.09756
COL27A1	0	genome.wustl.edu	37	9	116930298	116930298	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	116930298	116930298	C	T	SNP	COL27A1	ENST00000356083	human	ensembl	74_37	+1	known	missense	c.463	p.R155C	1.000	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL27A1	HGNC	ENSG00000196739				35	0	0	15	3	16.6667
COL27A1	0	genome.wustl.edu	37	9	117062910	117062910	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	117062910	117062910	G	A	SNP	COL27A1	ENST00000356083	human	ensembl	74_37	+1	known	silent	c.4644	p.P1548	0.996	NULL	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL27A1	HGNC	ENSG00000196739				26	0	0	20	6	23.0769
COL27A1	0	genome.wustl.edu	37	9	117070050	117070050	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	117070050	117070050	G	A	SNP	COL27A1	ENST00000356083	human	ensembl	74_37	+1	known	missense	c.5209	p.A1737T	0.993	pfam_Fib_collagen_C,smart_Fib_collagen_C	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL27A1	HGNC	ENSG00000196739				75	0	0	41	20	32.7869
DFNB31	0	genome.wustl.edu	37	9	117188608	117188608	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	117188608	117188608	C	T	SNP	DFNB31	ENST00000362057	human	ensembl	74_37	-1	known	missense	c.1049	p.R350Q	0.996	pfam_PDZ,superfamily_PDZ,smart_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	DFNB31	HGNC	ENSG00000095397				75	0	0	38	4	9.52381
PAPPA	0	genome.wustl.edu	37	9	119124887	119124887	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	119124887	119124887	T	C	SNP	PAPPA	ENST00000328252	human	ensembl	74_37	+1	known	missense	c.4364	p.V1455A	0.174	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_Notch_dom,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA	HGNC	ENSG00000182752				102	0	0	69	23	25
ASTN2	0	genome.wustl.edu	37	9	119976705	119976705	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	119976705	119976705	C	T	SNP	ASTN2	ENST00000313400	human	ensembl	74_37	-1	known	missense	c.947	p.S316N	1.000	NULL	pfam_MACPF,superfamily_Fibronectin_type3,smart_MACPF	-	no_errors	ASTN2	HGNC	ENSG00000148219				101	0	0	81	24	22.8571
TLR4	0	genome.wustl.edu	37	9	120476537	120476537	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	120476537	120476537	G	T	SNP	TLR4	ENST00000355622	human	ensembl	74_37	+1	known	missense	c.2131	p.D711Y	1.000	pirsf_Toll-like_receptor,pfam_TIR_dom,superfamily_TIR_dom,smart_TIR_dom,pfscan_TIR_dom	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR4	HGNC	ENSG00000136869				73	0	0	53	23	30.2632
CDK5RAP2	0	genome.wustl.edu	37	9	123220813	123220813	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	123220813	123220813	C	T	SNP	CDK5RAP2	ENST00000349780	human	ensembl	74_37	-1	known	missense	c.2290	p.A764T	0.000	NULL	pfam_Spindle_assoc	-	no_errors	CDK5RAP2	HGNC	ENSG00000136861				68	0	0	63	21	25
CDK5RAP2	0	genome.wustl.edu	37	9	123308012	123308012	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	123308012	123308012	C	A	SNP	CDK5RAP2	ENST00000349780	human	ensembl	74_37	-1	known	missense	c.363	p.E121D	1.000	pfam_Spindle_assoc	pfam_Spindle_assoc	-	no_errors	CDK5RAP2	HGNC	ENSG00000136861				131	1	0.757576	88	39	30.7087
C5	0	genome.wustl.edu	37	9	123769199	123769199	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	123769199	123769199	A	C	SNP	C5	ENST00000223642	human	ensembl	74_37	-1	known	missense	c.2405	p.V802G	0.951	pfam_Macroglobln_a2	pfam_A2M_comp,pfam_Macroglobln_a2,pfam_A2M_N_2,pfam_A-macroglobulin_rcpt-bd,pfam_Netrin_module_non-TIMP,pfam_A2M_N,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_comp_syst,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain,prints_Anaphylatoxn_comp_syst_dom	-	no_errors	C5	HGNC	ENSG00000106804				69	0	0	49	17	25.7576
RAB14	0	genome.wustl.edu	37	9	123952946	123952946	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	123952946	123952946	C	T	SNP	RAB14	ENST00000373840	human	ensembl	74_37	-1	known	missense	c.170	p.G57D	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB14	HGNC	ENSG00000119396				78	0	0	83	5	5.68182
GSN	0	genome.wustl.edu	37	9	124064372	124064372	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	124064372	124064372	C	T	SNP	GSN	ENST00000373818	human	ensembl	74_37	+1	known	silent	c.276	p.G92	0.510	pfam_Gelsolin_dom,smart_Villin/Gelsolin	pfam_Gelsolin_dom,smart_Villin/Gelsolin,prints_Villin/Gelsolin	-	no_errors	GSN	HGNC	ENSG00000148180				119	0	0	77	6	7.22892
DAB2IP	0	genome.wustl.edu	37	9	124522353	124522353	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	124522353	124522353	C	T	SNP	DAB2IP	ENST00000408936	human	ensembl	74_37	+1	known	missense	c.805	p.R269C	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom	pfam_DUF3498,pfam_RasGAP,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	DAB2IP	HGNC	ENSG00000136848				95	0	0	45	19	29.6875
DAB2IP	0	genome.wustl.edu	37	9	124528868	124528868	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	124528868	124528868	C	T	SNP	DAB2IP	ENST00000408936	human	ensembl	74_37	+1	known	missense	c.1556	p.A519V	1.000	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,smart_RasGAP,pfscan_RasGAP	pfam_DUF3498,pfam_RasGAP,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	DAB2IP	HGNC	ENSG00000136848				64	0	0	36	9	20
LHX6	0	genome.wustl.edu	37	9	124975917	124975917	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	124975917	124975917	G	A	SNP	LHX6	ENST00000394319	human	ensembl	74_37	-1	known	missense	c.1022	p.A341V	1.000	NULL	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LHX6	HGNC	ENSG00000106852				16	0	0	16	4	20
PTGS1	0	genome.wustl.edu	37	9	125140215	125140215	+	Silent	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	125140215	125140215	C	A	SNP	PTGS1	ENST00000362012	human	ensembl	74_37	+1	known	silent	c.132	p.G44	0.010	pfscan_EG-like_dom	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_EG-like_dom,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	PTGS1	HGNC	ENSG00000095303				66	0	0	50	11	18.0328
PTGS1	0	genome.wustl.edu	37	9	125143979	125143979	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	125143979	125143979	C	T	SNP	PTGS1	ENST00000362012	human	ensembl	74_37	+1	known	missense	c.715	p.R239C	0.971	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_EG-like_dom,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	PTGS1	HGNC	ENSG00000095303				30	0	0	30	15	33.3333
OR1L1	0	genome.wustl.edu	37	9	125424697	125424697	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	125424697	125424697	C	T	SNP	OR1L1	ENST00000373686	human	ensembl	74_37	+1	known	missense	c.853	p.R285C	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1L1	HGNC	ENSG00000173679				216	1	0.460829	158	15	8.67052
ZBTB26	0	genome.wustl.edu	37	9	125681251	125681251	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	125681251	125681251	G	A	SNP	ZBTB26	ENST00000373654	human	ensembl	74_37	-1	known	silent	c.963	p.A321	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB26	HGNC	ENSG00000171448				93	0	0	66	22	25
STRBP	0	genome.wustl.edu	37	9	125898431	125898431	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	125898431	125898431	G	A	SNP	STRBP	ENST00000348403	human	ensembl	74_37	-1	known	silent	c.1662	p.G554	0.985	pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,pfscan_dsRNA-bd_dom	pfam_DZF,pfam_dsRNA-bd_dom,smart_DZF,smart_dsRNA-bd_dom,pfscan_dsRNA-bd_dom	-	no_errors	STRBP	HGNC	ENSG00000165209				108	0	0	84	27	24.3243
STRBP	0	genome.wustl.edu	37	9	125941475	125941475	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	125941475	125941475	C	T	SNP	STRBP	ENST00000348403	human	ensembl	74_37	-1	known	missense	c.35	p.R12H	1.000	NULL	pfam_DZF,pfam_dsRNA-bd_dom,smart_DZF,smart_dsRNA-bd_dom,pfscan_dsRNA-bd_dom	-	no_errors	STRBP	HGNC	ENSG00000165209				72	0	0	54	13	19.403
CRB2	0	genome.wustl.edu	37	9	126132504	126132504	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	126132504	126132504	G	A	SNP	CRB2	ENST00000373631	human	ensembl	74_37	+1	known	missense	c.1172	p.R391H	0.000	pfam_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_EG-like_dom,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	CRB2	HGNC	ENSG00000148204				32	0	0	17	5	22.7273
CRB2	0	genome.wustl.edu	37	9	126132729	126132729	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	126132729	126132729	G	A	SNP	CRB2	ENST00000373631	human	ensembl	74_37	+1	known	missense	c.1397	p.R466H	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_EG-like_dom,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	CRB2	HGNC	ENSG00000148204				45	0	0	23	8	25.8065
CRB2	0	genome.wustl.edu	37	9	126133829	126133829	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	126133829	126133829	C	T	SNP	CRB2	ENST00000373631	human	ensembl	74_37	+1	known	missense	c.2408	p.A803V	0.000	superfamily_ConA-like_lec_gl_sf	pfam_EG-like_dom,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	CRB2	HGNC	ENSG00000148204				25	0	0	13	6	31.5789
DENND1A	0	genome.wustl.edu	37	9	126414424	126414424	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	126414424	126414424	G	A	SNP	DENND1A	ENST00000475615	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	DENND1A	HGNC	ENSG00000119522				34	0	0	23	5	17.8571
LHX2	0	genome.wustl.edu	37	9	126777465	126777465	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	126777465	126777465	C	T	SNP	LHX2	ENST00000373615	human	ensembl	74_37	+1	known	missense	c.388	p.R130C	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LHX2	HGNC	ENSG00000106689				135	0	0	88	33	27.2727
OLFML2A	0	genome.wustl.edu	37	9	127572560	127572560	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	127572560	127572560	G	A	SNP	OLFML2A	ENST00000373580	human	ensembl	74_37	+1	known	missense	c.1828	p.A610T	1.000	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFML2A	HGNC	ENSG00000185585				34	0	0	28	6	17.6471
GAPVD1	0	genome.wustl.edu	37	9	128025965	128025965	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	128025965	128025965	G	A	SNP	GAPVD1	ENST00000469528	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	GAPVD1	HGNC	ENSG00000165219				57	0	0	22	12	35.2941
MAPKAP1	0	genome.wustl.edu	37	9	128434766	128434766	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	128434766	128434766	C	T	SNP	MAPKAP1	ENST00000265960	human	ensembl	74_37	-1	known	missense	c.88	p.V30I	1.000	pfam_SIN1	pfam_SIN1	-	no_errors	MAPKAP1	HGNC	ENSG00000119487				88	0	0	47	24	33.8028
STXBP1	0	genome.wustl.edu	37	9	130430453	130430453	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	130430453	130430453	G	A	SNP	STXBP1	ENST00000373299	human	ensembl	74_37	+1	known	missense	c.889	p.A297T	1.000	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	STXBP1	HGNC	ENSG00000136854				30	0	0	23	6	20.6897
ODF2	0	genome.wustl.edu	37	9	131262457	131262457	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	131262457	131262457	G	A	SNP	ODF2	ENST00000434106	human	ensembl	74_37	+1	known	missense	c.2413	p.A805T	1.000	NULL	NULL	-	no_errors	ODF2	HGNC	ENSG00000136811				129	0	0	103	40	27.972
GLE1	0	genome.wustl.edu	37	9	131271265	131271265	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	131271265	131271265	G	A	SNP	GLE1	ENST00000309971	human	ensembl	74_37	+1	known	silent	c.210	p.S70	0.000	NULL	pfam_GLE1	-	no_errors	GLE1	HGNC	ENSG00000119392				69	0	0	33	16	32.6531
PKN3	0	genome.wustl.edu	37	9	131475831	131475831	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	131475831	131475831	C	T	SNP	PKN3	ENST00000291906	human	ensembl	74_37	+1	known	silent	c.1146	p.G382	0.605	superfamily_C2_dom	pfam_Prot_kinase_dom,pfam_HR1_rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,superfamily_C2_dom,smart_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom	-	no_errors	PKN3	HGNC	ENSG00000160447				52	0	0	29	9	23.6842
PKN3	0	genome.wustl.edu	37	9	131476578	131476578	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	131476578	131476578	G	C	SNP	PKN3	ENST00000291906	human	ensembl	74_37	+1	known	missense	c.1415	p.S472T	1.000	NULL	pfam_Prot_kinase_dom,pfam_HR1_rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,superfamily_C2_dom,smart_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom	-	no_errors	PKN3	HGNC	ENSG00000160447				73	0	0	62	17	21.519
TBC1D13	0	genome.wustl.edu	37	9	131568288	131568288	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	131568288	131568288	G	A	SNP	TBC1D13	ENST00000372648	human	ensembl	74_37	+1	known	missense	c.1069	p.A357T	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D13	HGNC	ENSG00000107021				65	0	0	36	9	20
LRRC8A	0	genome.wustl.edu	37	9	131671260	131671260	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	131671260	131671260	T	A	SNP	LRRC8A	ENST00000259324	human	ensembl	74_37	+1	known	missense	c.1817	p.I606N	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8A	HGNC	ENSG00000136802				76	0	0	44	14	24.1379
NUP188	0	genome.wustl.edu	37	9	131760467	131760467	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	131760467	131760467	G	A	SNP	NUP188	ENST00000372577	human	ensembl	74_37	+1	known	missense	c.3389	p.R1130H	1.000	NULL	pfam_Nucleoporin_Nup188,superfamily_ARM-type_fold	-	no_errors	NUP188	HGNC	ENSG00000095319				258	0	0	168	77	31.4286
SH3GLB2	0	genome.wustl.edu	37	9	131777084	131777084	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	131777084	131777084	C	T	SNP	SH3GLB2	ENST00000372554	human	ensembl	74_37	-1	known	missense	c.434	p.R145H	1.000	pfam_BAR_dom,pfam_BAR_dom-cont,smart_BAR_dom,pfscan_BAR_dom	pfam_BAR_dom,pfam_BAR_dom-cont,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain	-	no_errors	SH3GLB2	HGNC	ENSG00000148341				115	0	0	59	11	15.7143
USP20	0	genome.wustl.edu	37	9	132636952	132636952	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	132636952	132636952	G	A	SNP	USP20	ENST00000315480	human	ensembl	74_37	+1	known	missense	c.1838	p.R613H	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Pept_C19_DUSP,pfam_Znf_UBP,smart_Znf_UBP,smart_Pept_C19_DUSP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP20	HGNC	ENSG00000136878				72	0	0	53	7	11.6667
ASS1	0	genome.wustl.edu	37	9	133339508	133339508	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	133339508	133339508	A	G	SNP	ASS1	ENST00000352480	human	ensembl	74_37	+1	known	missense	c.374	p.Q125R	1.000	pfam_Arginosuc_synth,tigrfam_Arginosuc_synth	pfam_Arginosuc_synth,pfam_QueC,tigrfam_Arginosuc_synth	-	no_errors	ASS1	HGNC	ENSG00000130707				43	0	0	24	6	20
ABL1	0	genome.wustl.edu	37	9	133738377	133738377	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	133738377	133738377	C	T	SNP	ABL1	ENST00000372348	human	ensembl	74_37	+1	known	silent	c.834	p.G278	0.056	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_F-actin_binding,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_F-actin_binding,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ABL1	HGNC	ENSG00000097007				29	0	0	29	14	32.5581
ABL1	0	genome.wustl.edu	37	9	133759406	133759406	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	133759406	133759406	C	T	SNP	ABL1	ENST00000372348	human	ensembl	74_37	+1	known	nonsense	c.1786	p.R596*	1.000	NULL	pfam_F-actin_binding,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_F-actin_binding,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ABL1	HGNC	ENSG00000097007				118	0	0	76	30	28.3019
LAMC3	0	genome.wustl.edu	37	9	133946996	133946996	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	133946996	133946996	C	T	SNP	LAMC3	ENST00000361069	human	ensembl	74_37	+1	known	silent	c.3195	p.G1065	0.012	NULL	pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_B_type_IV,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMC3	HGNC	ENSG00000050555				27	0	0	15	9	37.5
NUP214	0	genome.wustl.edu	37	9	134002952	134002952	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	134002952	134002952	C	A	SNP	NUP214	ENST00000451030	human	ensembl	74_37	+1	known	missense	c.87	p.D29E	0.091	NULL	smart_WD40_repeat	-	no_errors	NUP214	HGNC	ENSG00000126883				139	0	0	102	32	23.8806
NUP214	0	genome.wustl.edu	37	9	134004682	134004682	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	134004682	134004682	G	A	SNP	NUP214	ENST00000451030	human	ensembl	74_37	+1	known	missense	c.410	p.R137H	0.852	NULL	smart_WD40_repeat	-	no_errors	NUP214	HGNC	ENSG00000126883				69	0	0	61	23	27.381
NUP214	0	genome.wustl.edu	37	9	134019919	134019919	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	134019919	134019919	G	A	SNP	NUP214	ENST00000451030	human	ensembl	74_37	+1	known	missense	c.1547	p.G516D	0.007	NULL	smart_WD40_repeat	-	no_errors	NUP214	HGNC	ENSG00000126883				100	0	0	94	6	6
PRRC2B	0	genome.wustl.edu	37	9	134330540	134330540	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	134330540	134330540	G	A	SNP	PRRC2B	ENST00000357304	human	ensembl	74_37	+1	known	missense	c.1198	p.G400S	1.000	NULL	pfam_BAT2_N	-	no_errors	PRRC2B	HGNC	ENSG00000130723				46	0	0	35	6	14.6341
PRRC2B	0	genome.wustl.edu	37	9	134351424	134351424	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	134351424	134351424	G	A	SNP	PRRC2B	ENST00000357304	human	ensembl	74_37	+1	known	missense	c.3908	p.R1303H	1.000	NULL	pfam_BAT2_N	-	no_errors	PRRC2B	HGNC	ENSG00000130723				74	0	0	32	24	42.8571
NTNG2	0	genome.wustl.edu	37	9	135114555	135114555	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	135114555	135114555	C	T	SNP	NTNG2	ENST00000360670	human	ensembl	74_37	+1	known	silent	c.1137	p.C379	0.996	pfam_EGF_laminin,smart_EGF_laminin,smart_EG-like_dom	pfam_Laminin_N,pfam_EGF_laminin,pfam_EGF_extracell,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	NTNG2	HGNC	ENSG00000196358				44	0	0	31	14	31.1111
SETX	0	genome.wustl.edu	37	9	135203175	135203175	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	135203175	135203175	C	T	SNP	SETX	ENST00000372169	human	ensembl	74_37	-1	known	silent	c.3810	p.P1270	0.991	NULL	superfamily_P-loop_NTPase	-	no_errors	SETX	HGNC	ENSG00000107290				244	0	0	194	11	5.36585
TTF1	0	genome.wustl.edu	37	9	135275547	135275547	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	135275547	135275547	G	A	SNP	TTF1	ENST00000334270	human	ensembl	74_37	-1	known	missense	c.1466	p.A489V	0.639	NULL	superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	TTF1	HGNC	ENSG00000125482				133	0	0	132	35	20.9581
TSC1	0	genome.wustl.edu	37	9	135797351	135797351	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	135797351	135797351	G	A	SNP	TSC1	ENST00000298552	human	ensembl	74_37	-1	known	missense	c.518	p.A173V	1.000	pfam_Hamartin	pfam_Hamartin,superfamily_ARM-type_fold	-	no_errors	TSC1	HGNC	ENSG00000165699				156	0	0	117	30	20.4082
GTF3C5	0	genome.wustl.edu	37	9	135931464	135931464	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	135931464	135931464	C	T	SNP	GTF3C5	ENST00000372108	human	ensembl	74_37	+1	known	silent	c.1254	p.C418	0.889	NULL	pfam_TF_IIIC_su-5	-	no_errors	GTF3C5	HGNC	ENSG00000148308				31	0	0	27	4	12.9032
RALGDS	0	genome.wustl.edu	37	9	135982604	135982604	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	135982604	135982604	C	T	SNP	RALGDS	ENST00000542690	human	ensembl	74_37	-1	known	silent	c.1494	p.A498	0.016	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_Ras-assoc,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RALGDS	HGNC	ENSG00000160271				43	0	0	16	4	20
C9orf96	0	genome.wustl.edu	37	9	136256456	136256456	+	Splice_Site	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	136256456	136256456	G	T	SNP	C9orf96	ENST00000371957	human	ensembl	74_37	+1	known	splice_site	c.468-1	e7-1	1.000	-	-	-	no_errors	C9orf96	HGNC	ENSG00000198870				349	0	0	266	23	7.95848
ADAMTS13	0	genome.wustl.edu	37	9	136319700	136319700	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	136319700	136319700	G	A	SNP	ADAMTS13	ENST00000371929	human	ensembl	74_37	+1	known	missense	c.3208	p.A1070T	0.002	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,superfamily_CUB_dom,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS13	HGNC	ENSG00000160323				17	0	0	7	6	46.1538
DBH	0	genome.wustl.edu	37	9	136508675	136508675	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	136508675	136508675	C	T	SNP	DBH	ENST00000393056	human	ensembl	74_37	+1	known	silent	c.885	p.C295	1.000	pfam_Cu2_ascorb_mOase_N,superfamily_PHM/PNGase_F_dom,prints_Dopamine_b_mOase	pfam_Cu2_ascorb_mOase_N,pfam_DOMON_domain,superfamily_PHM/PNGase_F_dom,smart_DOMON_domain,pfscan_DOMON_domain,prints_Dopamine_b_mOase	-	no_errors	DBH	HGNC	ENSG00000123454				46	0	0	15	10	40
VAV2	0	genome.wustl.edu	37	9	136643996	136643996	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	136643996	136643996	G	A	SNP	VAV2	ENST00000371850	human	ensembl	74_37	-1	known	missense	c.1778	p.A593V	0.999	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_DH-domain,pfam_SH3_2,pfam_CAMSAP_CH,pfam_SH3_domain,pfam_SH2,pfam_CH-domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,smart_SH2,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain,prints_SH2,prints_SH3_domain	-	no_errors	VAV2	HGNC	ENSG00000160293				45	0	0	22	18	45
VAV2	0	genome.wustl.edu	37	9	136677305	136677305	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	136677305	136677305	G	A	SNP	VAV2	ENST00000371850	human	ensembl	74_37	-1	known	silent	c.483	p.C161	0.888	superfamily_CH-domain	pfam_DH-domain,pfam_SH3_2,pfam_CAMSAP_CH,pfam_SH3_domain,pfam_SH2,pfam_CH-domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,smart_SH2,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain,prints_SH2,prints_SH3_domain	-	no_errors	VAV2	HGNC	ENSG00000160293				90	0	0	58	16	21.6216
BRD3	0	genome.wustl.edu	37	9	136913403	136913403	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	136913403	136913403	G	A	SNP	BRD3	ENST00000303407	human	ensembl	74_37	-1	known	silent	c.888	p.G296	0.947	superfamily_Bromodomain	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	BRD3	HGNC	ENSG00000169925				37	0	0	23	6	20.6897
RXRA	0	genome.wustl.edu	37	9	137300846	137300846	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	137300846	137300846	G	A	SNP	RXRA	ENST00000481739	human	ensembl	74_37	+1	known	missense	c.491	p.R164H	1.000	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Nuc_recep-AF1,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoid-X_rcpt/HNF4,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_COUP_TF,prints_Retinoic_acid_rcpt	-	no_errors	RXRA	HGNC	ENSG00000186350				68	0	0	62	6	8.82353
RXRA	0	genome.wustl.edu	37	9	137309069	137309069	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	137309069	137309069	G	A	SNP	RXRA	ENST00000481739	human	ensembl	74_37	+1	known	missense	c.676	p.A226T	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Nuc_recep-AF1,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoid-X_rcpt/HNF4,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_COUP_TF,prints_Retinoic_acid_rcpt	-	no_errors	RXRA	HGNC	ENSG00000186350				36	0	0	28	3	9.67742
COL5A1	0	genome.wustl.edu	37	9	137707473	137707473	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	137707473	137707473	G	A	SNP	COL5A1	ENST00000371817	human	ensembl	74_37	+1	known	missense	c.4066	p.A1356T	0.993	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A1	HGNC	ENSG00000130635				15	0	0	6	5	45.4545
PPP1R26	0	genome.wustl.edu	37	9	138376878	138376878	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	138376878	138376878	G	A	SNP	PPP1R26	ENST00000356818	human	ensembl	74_37	+1	known	silent	c.522	p.P174	0.009	NULL	NULL	-	no_errors	PPP1R26	HGNC	ENSG00000196422				27	0	0	13	4	23.5294
PPP1R26	0	genome.wustl.edu	37	9	138379962	138379962	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	138379962	138379962	C	T	SNP	PPP1R26	ENST00000356818	human	ensembl	74_37	+1	known	silent	c.3606	p.G1202	0.001	NULL	NULL	-	no_errors	PPP1R26	HGNC	ENSG00000196422				34	0	0	23	7	23.3333
MRPS2	0	genome.wustl.edu	37	9	138395607	138395607	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	138395607	138395607	C	T	SNP	MRPS2	ENST00000241600	human	ensembl	74_37	+1	known	silent	c.519	p.G173	0.309	pfam_Ribosomal_S2,superfamily_Ribosomal_S2_flav_dom,prints_Ribosomal_S2	pfam_Ribosomal_S2,superfamily_Ribosomal_S2_flav_dom,prints_Ribosomal_S2	-	no_errors	MRPS2	HGNC	ENSG00000122140				23	0	0	18	4	18.1818
LCN9	0	genome.wustl.edu	37	9	138557549	138557549	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	138557549	138557549	C	T	SNP	LCN9	ENST00000277526	human	ensembl	74_37	+1	known	silent	c.426	p.C142	0.041	superfamily_Calycin-like	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Maj_urinary,prints_Odour-bd,prints_Blactoglobulin	-	no_errors	LCN9	HGNC	ENSG00000148386				30	0	0	17	4	19.0476
CAMSAP1	0	genome.wustl.edu	37	9	138714394	138714394	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	138714394	138714394	C	G	SNP	CAMSAP1	ENST00000409386	human	ensembl	74_37	-1	known	missense	c.2146	p.G716R	0.003	NULL	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrel-like,superfamily_CH-domain	-	no_errors	CAMSAP1	HGNC	ENSG00000130559				41	0	0	32	10	23.8095
UBAC1	0	genome.wustl.edu	37	9	138837817	138837817	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	138837817	138837817	G	A	SNP	UBAC1	ENST00000371756	human	ensembl	74_37	-1	known	missense	c.571	p.R191C	0.991	superfamily_UBA-like,pfscan_UBA/transl_elong_EF1B_N_euk	pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,smart_STI1_HS-bd,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBAC1	HGNC	ENSG00000130560				34	0	0	24	4	14.2857
QSOX2	0	genome.wustl.edu	37	9	139113754	139113754	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	139113754	139113754	C	T	SNP	QSOX2	ENST00000358701	human	ensembl	74_37	-1	known	missense	c.709	p.V237M	0.906	NULL	pfam_ERV/ALR_sulphydryl_oxidase,pfam_Thioredoxin_domain,superfamily_ERV/ALR_sulphydryl_oxidase,superfamily_Thioredoxin-like_fold	-	no_errors	QSOX2	HGNC	ENSG00000165661				99	0	0	62	25	28.7356
SDCCAG3	0	genome.wustl.edu	37	9	139302298	139302298	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	139302298	139302298	C	T	SNP	SDCCAG3	ENST00000357365	human	ensembl	74_37	-1	known	missense	c.382	p.A128T	0.000	NULL	NULL	-	no_errors	SDCCAG3	HGNC	ENSG00000165689				89	0	0	78	7	8.23529
PMPCA	0	genome.wustl.edu	37	9	139311661	139311661	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	139311661	139311661	G	A	SNP	PMPCA	ENST00000371717	human	ensembl	74_37	+1	known	missense	c.892	p.A298T	0.923	pfam_Peptidase_M16_C	pfam_Pept_M16_N,pfam_Peptidase_M16_C,superfamily_Metalloenz_LuxS/M16	-	no_errors	PMPCA	HGNC	ENSG00000165688				32	0	0	21	6	22.2222
SEC16A	0	genome.wustl.edu	37	9	139358156	139358156	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	139358156	139358156	G	A	SNP	SEC16A	ENST00000313050	human	ensembl	74_37	-1	known	missense	c.4483	p.R1495W	1.000	NULL	NULL	-	no_errors	SEC16A	HGNC	ENSG00000148396				49	0	0	39	18	31.5789
NOTCH1	0	genome.wustl.edu	37	9	139391176	139391176	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	139391176	139391176	C	T	SNP	NOTCH1	ENST00000277541	human	ensembl	74_37	-1	known	missense	c.7015	p.A2339T	0.961	pirsf_Notch	pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_EGF_extracell,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_1,prints_Notch_dom	-	no_errors	NOTCH1	HGNC	ENSG00000148400				29	0	0	11	6	35.2941
NOTCH1	0	genome.wustl.edu	37	9	139397687	139397687	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	139397687	139397687	G	A	SNP	NOTCH1	ENST00000277541	human	ensembl	74_37	-1	known	missense	c.5114	p.A1705V	0.999	pfam_Notch_NODP_dom,pirsf_Notch	pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_EGF_extracell,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_1,prints_Notch_dom	-	no_errors	NOTCH1	HGNC	ENSG00000148400				23	0	0	16	4	20
NOTCH1	0	genome.wustl.edu	37	9	139407576	139407576	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	139407576	139407576	G	A	SNP	NOTCH1	ENST00000277541	human	ensembl	74_37	-1	known	silent	c.2364	p.C788	1.000	smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_Notch,pfscan_EG-like_dom	pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_EGF_extracell,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_1,prints_Notch_dom	-	no_errors	NOTCH1	HGNC	ENSG00000148400				67	0	0	36	13	26.5306
NOTCH1	0	genome.wustl.edu	37	9	139412321	139412321	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	139412321	139412321	G	A	SNP	NOTCH1	ENST00000277541	human	ensembl	74_37	-1	known	nonsense	c.1324	p.Q442*	1.000	pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_Notch,pfscan_EG-like_dom	pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_EGF_extracell,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_1,prints_Notch_dom	-	no_errors	NOTCH1	HGNC	ENSG00000148400				42	0	0	16	10	38.4615
KIAA1984-AS1	0	genome.wustl.edu	37	9	139701355	139701355	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	139701355	139701355	G	A	SNP	KIAA1984-AS1	ENST00000414656	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	KIAA1984-AS1	HGNC	ENSG00000228544				29	0	0	34	13	27.6596
ZMYND19	0	genome.wustl.edu	37	9	140481457	140481457	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	140481457	140481457	G	A	SNP	ZMYND19	ENST00000298585	human	ensembl	74_37	-1	known	silent	c.321	p.G107	1.000	NULL	pfam_Znf_MYND,pfscan_Znf_MYND	-	no_errors	ZMYND19	HGNC	ENSG00000165724				28	0	0	21	9	30
EHMT1	0	genome.wustl.edu	37	9	140672491	140672491	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	140672491	140672491	G	A	SNP	EHMT1	ENST00000460843	human	ensembl	74_37	+1	known	missense	c.2176	p.A726T	1.000	NULL	pfam_Ankyrin_rpt,pfam_SET_dom,pfam_Pre-SET_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,prints_Ankyrin_rpt	-	no_errors	EHMT1	HGNC	ENSG00000181090				60	0	0	22	22	50
NFIB	0	genome.wustl.edu	37	9	14150263	14150263	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	14150263	14150263	C	T	SNP	NFIB	ENST00000397581	human	ensembl	74_37	-1	known	silent	c.687	p.T229	0.630	pfam_CTF/NFI	pfam_CTF/NFI,pfam_CTF/NFI_DNA-bd_N,pfam_MAD_homology1_Dwarfin-type,smart_MAD_homology1_Dwarfin-type,pfscan_CTF/NFI_DNA-bd-dom	-	no_errors	NFIB	HGNC	ENSG00000147862				309	0	0	247	17	6.43939
FREM1	0	genome.wustl.edu	37	9	14775838	14775838	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	14775838	14775838	G	A	SNP	FREM1	ENST00000380881	human	ensembl	74_37	-1	known	silent	c.4809	p.G1603	1.000	NULL	pfam_C-type_lectin,pfam_Calx_beta,superfamily_C-type_lectin_fold,superfamily_Cadherin-like,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	FREM1	HGNC	ENSG00000164946				71	0	0	48	4	7.69231
PSIP1	0	genome.wustl.edu	37	9	15472661	15472661	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	15472661	15472661	G	A	SNP	PSIP1	ENST00000380733	human	ensembl	74_37	-1	known	missense	c.946	p.R316C	1.000	NULL	pfam_LEDGF,pfam_PWWP_dom,smart_PWWP_dom,pfscan_PWWP_dom,prints_Treacle-like_TCS	-	no_errors	PSIP1	HGNC	ENSG00000164985				99	0	0	67	28	29.4737
CCDC171	0	genome.wustl.edu	37	9	15874641	15874641	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	15874641	15874641	C	T	SNP	CCDC171	ENST00000380701	human	ensembl	74_37	+1	known	missense	c.3580	p.P1194S	1.000	NULL	superfamily_STAT_TF_coiled-coil	-	no_errors	CCDC171	HGNC	ENSG00000164989				74	0	0	34	13	27.6596
BNC2	0	genome.wustl.edu	37	9	16552745	16552745	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	16552745	16552745	G	A	SNP	BNC2	ENST00000380672	human	ensembl	74_37	-1	known	missense	c.452	p.T151M	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BNC2	HGNC	ENSG00000173068				53	0	0	39	15	27.7778
BNC2	0	genome.wustl.edu	37	9	16738415	16738415	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	16738415	16738415	T	G	SNP	BNC2	ENST00000380672	human	ensembl	74_37	-1	known	missense	c.72	p.Q24H	0.047	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BNC2	HGNC	ENSG00000173068				40	0	0	23	11	32.3529
ADAMTSL1	0	genome.wustl.edu	37	9	18681926	18681926	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	18681926	18681926	C	T	SNP	ADAMTSL1	ENST00000327883	human	ensembl	74_37	+1	known	silent	c.1458	p.C486	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,pfam_ADAM_spacer1,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Thrombospondin_1_rpt	-	no_errors	ADAMTSL1	HGNC	ENSG00000178031				314	0	0	238	70	22.7273
ADAMTSL1	0	genome.wustl.edu	37	9	18706803	18706803	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	18706803	18706803	C	T	SNP	ADAMTSL1	ENST00000380548	human	ensembl	74_37	+1	novel	nonsense	c.1633	p.R545*	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,pfam_Immunoglobulin,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,prints_Peptidase_M12B_ADAM-TS,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	ADAMTSL1	HGNC	ENSG00000178031				14	0	0	10	5	33.3333
ADAMTSL1	0	genome.wustl.edu	37	9	18770654	18770654	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	18770654	18770654	C	T	SNP	ADAMTSL1	ENST00000380548	human	ensembl	74_37	+1	novel	missense	c.2272	p.R758C	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt	pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,pfam_Immunoglobulin,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,prints_Peptidase_M12B_ADAM-TS,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	ADAMTSL1	HGNC	ENSG00000178031				33	0	0	21	7	25
HAUS6	0	genome.wustl.edu	37	9	19058813	19058813	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	19058813	19058813	G	A	SNP	HAUS6	ENST00000380502	human	ensembl	74_37	-1	known	missense	c.1952	p.S651F	0.071	NULL	NULL	-	no_errors	HAUS6	HGNC	ENSG00000147874				113	0	0	90	6	6.25
DENND4C	0	genome.wustl.edu	37	9	19346603	19346603	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	19346603	19346603	G	A	SNP	DENND4C	ENST00000602925	human	ensembl	74_37	+1	known	missense	c.3689	p.R1230H	1.000	NULL	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND4C	HGNC	ENSG00000137145				98	0	0	61	27	30.6818
RPS6	0	genome.wustl.edu	37	9	19379526	19379526	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	19379526	19379526	C	T	SNP	RPS6	ENST00000380394	human	ensembl	74_37	-1	known	missense	c.97	p.A33T	1.000	pfam_Ribosomal_S6e,pirsf_Ribosomal_S6_euk	pfam_Ribosomal_S6e,pirsf_Ribosomal_S6_euk	-	no_errors	RPS6	HGNC	ENSG00000137154				62	0	0	34	5	12.8205
MLLT3	0	genome.wustl.edu	37	9	20448143	20448143	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	20448143	20448143	C	T	SNP	MLLT3	ENST00000380338	human	ensembl	74_37	-1	known	missense	c.398	p.R133K	1.000	NULL	pfam_YEATS,pfscan_YEATS	-	no_errors	MLLT3	HGNC	ENSG00000171843				129	0	0	130	7	5.10949
SMARCA2	0	genome.wustl.edu	37	9	2058432	2058432	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	2058432	2058432	C	T	SNP	SMARCA2	ENST00000349721	human	ensembl	74_37	+1	known	missense	c.1489	p.R497W	0.995	pfam_Helicase/SANT-assoc_DNA-bd,smart_HAS_subgr,pfscan_Helicase/SANT-assoc_DNA-bd	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_P-loop_NTPase,superfamily_Bromodomain,superfamily_RNaseH-like_dom,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	SMARCA2	HGNC	ENSG00000080503				149	0	0	103	36	25.8993
IFNB1	0	genome.wustl.edu	37	9	21077640	21077640	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	21077640	21077640	C	T	SNP	IFNB1	ENST00000380232	human	ensembl	74_37	-1	known	missense	c.229	p.A77T	0.000	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNB1	HGNC	ENSG00000171855				155	0	0	122	8	6.15385
SMARCA2	0	genome.wustl.edu	37	9	2115922	2115922	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	2115922	2115922	C	T	SNP	SMARCA2	ENST00000349721	human	ensembl	74_37	+1	known	missense	c.3557	p.A1186V	0.999	superfamily_P-loop_NTPase,pfscan_Helicase_C	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_P-loop_NTPase,superfamily_Bromodomain,superfamily_RNaseH-like_dom,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	SMARCA2	HGNC	ENSG00000080503				40	0	0	36	14	28
IFNA16	0	genome.wustl.edu	37	9	21217077	21217077	+	Silent	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	21217077	21217077	G	T	SNP	IFNA16	ENST00000380216	human	ensembl	74_37	-1	known	silent	c.228	p.A76	0.153	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA16	HGNC	ENSG00000147885				168	1	0.591716	104	41	28.2759
LRRC19	0	genome.wustl.edu	37	9	26997741	26997741	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	26997741	26997741	A	T	SNP	LRRC19	ENST00000380055	human	ensembl	74_37	-1	known	missense	c.580	p.S194T	0.994	smart_Cys-rich_flank_reg_C	smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRRC19	HGNC	ENSG00000184434				64	0	0	52	4	7.14286
KCNV2	0	genome.wustl.edu	37	9	2719001	2719001	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	2719001	2719001	G	A	SNP	KCNV2	ENST00000382082	human	ensembl	74_37	+1	known	missense	c.1262	p.G421D	1.000	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl,prints_K_chnl_volt-dep_Kv	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCNV2	HGNC	ENSG00000168263				38	0	0	22	7	24.1379
KIAA0020	0	genome.wustl.edu	37	9	2811408	2811408	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	2811408	2811408	C	T	SNP	KIAA0020	ENST00000397885	human	ensembl	74_37	-1	known	missense	c.1588	p.A530T	1.000	pfam_CPL,superfamily_ARM-type_fold	pfam_CPL,superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt,pfscan_Pumilio_RNA-bd_rpt	-	no_errors	KIAA0020	HGNC	ENSG00000080608				181	0	0	115	38	24.8366
KIAA0020	0	genome.wustl.edu	37	9	2824797	2824797	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	2824797	2824797	G	A	SNP	KIAA0020	ENST00000397885	human	ensembl	74_37	-1	known	missense	c.1054	p.R352C	1.000	superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt,pfscan_Pumilio_RNA-bd_rpt	pfam_CPL,superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt,pfscan_Pumilio_RNA-bd_rpt	-	no_errors	KIAA0020	HGNC	ENSG00000080608				14	0	0	9	3	25
KIAA0020	0	genome.wustl.edu	37	9	2829854	2829854	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	2829854	2829854	C	T	SNP	KIAA0020	ENST00000397885	human	ensembl	74_37	-1	known	missense	c.772	p.A258T	1.000	superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt,pfscan_Pumilio_RNA-bd_rpt	pfam_CPL,superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt,pfscan_Pumilio_RNA-bd_rpt	-	no_errors	KIAA0020	HGNC	ENSG00000080608				177	0	0	121	62	33.8798
PTENP1	0	genome.wustl.edu	37	9	33675437	33675437	+	RNA	SNP	T	T	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	33675437	33675437	T	A	SNP	PTENP1	ENST00000532280	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	PTENP1	HGNC	ENSG00000237984				31	0	0	17	12	41.3793
UBAP1	0	genome.wustl.edu	37	9	34241362	34241362	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	34241362	34241362	G	A	SNP	UBAP1	ENST00000545103	human	ensembl	74_37	+1	known	missense	c.531	p.M177I	0.990	NULL	superfamily_UBA-like,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBAP1	HGNC	ENSG00000165006				118	0	0	81	22	21.3592
KIAA1161	0	genome.wustl.edu	37	9	34371727	34371727	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	34371727	34371727	G	A	SNP	KIAA1161	ENST00000297625	human	ensembl	74_37	-1	known	silent	c.1113	p.G371	0.998	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	-	no_errors	KIAA1161	HGNC	ENSG00000164976				9	0	0	8	5	38.4615
DNAI1	0	genome.wustl.edu	37	9	34514714	34514714	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	34514714	34514714	G	A	SNP	DNAI1	ENST00000242317	human	ensembl	74_37	+1	known	missense	c.1795	p.A599T	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DNAI1	HGNC	ENSG00000122735				90	0	0	64	5	7.24638
C9orf131	0	genome.wustl.edu	37	9	35045333	35045333	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	35045333	35045333	C	A	SNP	C9orf131	ENST00000312292	human	ensembl	74_37	+1	known	missense	c.2707	p.P903T	0.000	NULL	NULL	-	no_errors	C9orf131	HGNC	ENSG00000174038				203	1	0.490196	175	17	8.85417
FAM214B	0	genome.wustl.edu	37	9	35107927	35107927	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	35107927	35107927	G	A	SNP	FAM214B	ENST00000322813	human	ensembl	74_37	-1	known	silent	c.345	p.S115	1.000	NULL	NULL	-	no_errors	FAM214B	HGNC	ENSG00000005238				47	0	0	37	4	9.7561
CREB3	0	genome.wustl.edu	37	9	35736398	35736398	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	35736398	35736398	G	A	SNP	CREB3	ENST00000353704	human	ensembl	74_37	+1	known	missense	c.791	p.R264H	0.996	NULL	pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	CREB3	HGNC	ENSG00000107175				88	0	0	55	7	11.2903
NPR2	0	genome.wustl.edu	37	9	35799719	35799719	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	35799719	35799719	C	T	SNP	NPR2	ENST00000342694	human	ensembl	74_37	+1	known	silent	c.978	p.G326	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Peripla_BP_I,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_A/G_cyclase,prints_Ntpep_rcpt,pfscan_Prot_kinase_dom,pfscan_A/G_cyclase	-	no_errors	NPR2	HGNC	ENSG00000159899				83	0	0	38	26	40.625
GLIPR2	0	genome.wustl.edu	37	9	36162402	36162402	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	36162402	36162402	C	T	SNP	GLIPR2	ENST00000377960	human	ensembl	74_37	+1	known	silent	c.348	p.G116	0.004	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1	-	no_errors	GLIPR2	HGNC	ENSG00000122694				93	0	0	87	5	5.43478
SLC25A51	0	genome.wustl.edu	37	9	37888210	37888210	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	37888210	37888210	A	G	SNP	SLC25A51	ENST00000242275	human	ensembl	74_37	-1	known	missense	c.338	p.V113A	0.010	superfamily_Mt_carrier_dom	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A51	HGNC	ENSG00000122696				149	0	0	106	45	29.8013
DOCK8	0	genome.wustl.edu	37	9	418150	418150	+	Silent	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	418150	418150	G	T	SNP	DOCK8	ENST00000453981	human	ensembl	74_37	+1	known	silent	c.3783	p.L1261	1.000	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N,superfamily_ARM-type_fold	-	no_errors	DOCK8	HGNC	ENSG00000107099				147	1	0.675676	91	26	22.2222
SPATA6L	0	genome.wustl.edu	37	9	4625438	4625438	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	4625438	4625438	C	T	SNP	SPATA6L	ENST00000454239	human	ensembl	74_37	-1	known	silent	c.558	p.A186	0.000	NULL	NULL	-	no_errors	SPATA6L	HGNC	ENSG00000106686				56	0	0	35	19	35.1852
AK3	0	genome.wustl.edu	37	9	4718478	4718478	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	4718478	4718478	C	T	SNP	AK3	ENST00000381809	human	ensembl	74_37	-1	known	silent	c.504	p.T168	0.030	pfam_Adenylate_kin,superfamily_P-loop_NTPase,prints_Adenylate_kin,tigrfam_Adenyl_kin_sub	pfam_Adenylate_kin,pfam_Adenylate_kinase_lid-dom,superfamily_P-loop_NTPase,superfamily_Adenylate_kinase_lid-dom,prints_Adenylate_kin,tigrfam_Adenyl_kin_sub	-	no_errors	AK3	HGNC	ENSG00000147853				82	0	0	63	20	24.0964
RCL1	0	genome.wustl.edu	37	9	4844593	4844593	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	4844593	4844593	C	T	SNP	RCL1	ENST00000381750	human	ensembl	74_37	+1	known	missense	c.779	p.A260V	1.000	pfam_RNA3'_phos_cyclase_dom,pfam_RNA3'-term_phos_cycl_insert,pirsf_RNA3'_term_phos_cyc,tigrfam_RNA3'_term_phos_cyc_type_2	pfam_RNA3'_phos_cyclase_dom,pfam_RNA3'-term_phos_cycl_insert,superfamily_RNA3'P_cycl/enolpyr_Trfase_a/b,pirsf_RNA3'_term_phos_cyc,tigrfam_RNA3'_term_phos_cyc_type_2	-	no_errors	RCL1	HGNC	ENSG00000120158				105	0	0	56	16	22.2222
UHRF2	0	genome.wustl.edu	37	9	6504628	6504628	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	6504628	6504628	C	T	SNP	UHRF2	ENST00000276893	human	ensembl	74_37	+1	known	silent	c.2199	p.C733	1.000	smart_Znf_RING,pfscan_Znf_RING	pfam_SRA_YDG,pfam_DUF3590,pfam_Ubiquitin_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Ubiquitin_dom,smart_Znf_PHD,smart_Znf_RING,smart_SRA_YDG,pfscan_SRA_YDG,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_Ubiquitin_supergroup	-	no_errors	UHRF2	HGNC	ENSG00000147854				38	0	0	21	7	25
LOC100996870	0	genome.wustl.edu	37	9	66466422	66466422	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	66466422	66466422	C	T	SNP	LOC100996870	ENST00000424345	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	RP11-262H14.1	Clone_based_vega_gene	ENSG00000238113				27	0	0	28	6	17.6471
FLJ20444	0	genome.wustl.edu	37	9	66513785	66513785	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	66513785	66513785	C	T	SNP	FLJ20444	ENST00000586625	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.996	-	-	-	no_errors	RP11-262H14.3	Clone_based_vega_gene	ENSG00000234665				40	0	0	21	3	12.5
CBWD5	0	genome.wustl.edu	37	9	70484465	70484465	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	70484465	70484465	G	A	SNP	CBWD5	ENST00000382405	human	ensembl	74_37	-1	known	missense	c.248	p.A83V	1.000	pfam_CobW/HypB/UreG_dom,superfamily_P-loop_NTPase	pfam_CobW/HypB/UreG_dom,pfam_Cbl_biosynth_CobW-like_C,superfamily_P-loop_NTPase,superfamily_Cbl_biosynth_CobW-like_C,smart_Cbl_biosynth_CobW-like_C	-	no_errors	CBWD5	HGNC	ENSG00000147996				33	0	0	28	5	15.1515
APBA1	0	genome.wustl.edu	37	9	72131639	72131639	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	72131639	72131639	G	A	SNP	APBA1	ENST00000265381	human	ensembl	74_37	-1	known	missense	c.488	p.A163V	1.000	NULL	pfam_PTB/PI_dom,pfam_PDZ,superfamily_PDZ,smart_PTB/PI_dom,smart_PDZ,pfscan_PDZ,pfscan_PTB/PI_dom	-	no_errors	APBA1	HGNC	ENSG00000107282				16	0	0	3	3	50
SMC5	0	genome.wustl.edu	37	9	72933542	72933542	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	72933542	72933542	C	T	SNP	SMC5	ENST00000361138	human	ensembl	74_37	+1	known	missense	c.1919	p.A640V	1.000	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase	-	no_errors	SMC5	HGNC	ENSG00000198887				140	0	0	101	28	21.7054
TRPM3	0	genome.wustl.edu	37	9	73151051	73151051	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	73151051	73151051	C	T	SNP	TRPM3	ENST00000423814	human	ensembl	74_37	-1	known	missense	c.5023	p.A1675T	0.706	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM3	HGNC	ENSG00000083067				339	0	0	278	67	19.4203
RORB	0	genome.wustl.edu	37	9	77286710	77286710	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	77286710	77286710	G	A	SNP	RORB	ENST00000396204	human	ensembl	74_37	+1	known	missense	c.1150	p.A384T	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_ThyrH_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_ROR_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_ThyrH_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	RORB	HGNC	ENSG00000198963				74	0	0	53	16	23.1884
TRPM6	0	genome.wustl.edu	37	9	77415329	77415329	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	77415329	77415329	C	T	SNP	TRPM6	ENST00000451710	human	ensembl	74_37	-1	known	silent	c.2079	p.T693	1.000	NULL	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM6	HGNC	ENSG00000119121				98	0	0	84	5	5.61798
PCSK5	0	genome.wustl.edu	37	9	78686647	78686647	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	78686647	78686647	C	T	SNP	PCSK5	ENST00000545128	human	ensembl	74_37	+1	known	nonsense	c.727	p.R243*	1.000	pfam_Peptidase_S8/S53_dom,superfamily_Peptidase_S8/S53_dom	pfam_Peptidase_S8/S53_dom,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53_dom,superfamily_Galactose-bd-like,superfamily_Growth_fac_rcpt_N_dom,superfamily_Prot_inh_propept,smart_Furin_repeat,smart_EG-like_dom,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK5	HGNC	ENSG00000099139				155	0	0	108	20	15.625
PCSK5	0	genome.wustl.edu	37	9	78969113	78969113	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	78969113	78969113	C	T	SNP	PCSK5	ENST00000545128	human	ensembl	74_37	+1	known	silent	c.5151	p.C1717	1.000	superfamily_Growth_fac_rcpt_N_dom	pfam_Peptidase_S8/S53_dom,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53_dom,superfamily_Galactose-bd-like,superfamily_Growth_fac_rcpt_N_dom,superfamily_Prot_inh_propept,smart_Furin_repeat,smart_EG-like_dom,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK5	HGNC	ENSG00000099139				13	0	0	10	4	28.5714
PRUNE2	0	genome.wustl.edu	37	9	79325763	79325763	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	79325763	79325763	G	A	SNP	PRUNE2	ENST00000428286	human	ensembl	74_37	-1	known	missense	c.350	p.A117V	0.072	NULL	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	PRUNE2	HGNC	ENSG00000106772				48	0	0	36	4	10
VPS13A	0	genome.wustl.edu	37	9	79910752	79910752	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	79910752	79910752	C	T	SNP	VPS13A	ENST00000360280	human	ensembl	74_37	+1	known	nonsense	c.3802	p.R1268*	1.000	NULL	pfam_VPSAP_dom,pfam_Autophagy-rel_C	-	no_errors	VPS13A	HGNC	ENSG00000197969				67	0	0	46	18	28.125
TLE4	0	genome.wustl.edu	37	9	82227576	82227576	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	82227576	82227576	G	T	SNP	TLE4	ENST00000376520	human	ensembl	74_37	+1	known	missense	c.258	p.E86D	1.000	pfam_Groucho/TLE_N	pfam_Groucho/TLE_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Groucho_enhance	-	no_errors	TLE4	HGNC	ENSG00000106829				102	0	0	76	19	20
UBQLN1	0	genome.wustl.edu	37	9	86276800	86276800	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	86276800	86276800	C	T	SNP	UBQLN1	ENST00000376395	human	ensembl	74_37	-1	known	missense	c.1672	p.G558R	1.000	pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,pfam_UBA/Ts_N,superfamily_UBA-like,superfamily_ARM-type_fold,superfamily_XPC-bd,smart_Ubiquitin_dom,smart_STI1_HS-bd,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Ubiquitin_supergroup	-	no_errors	UBQLN1	HGNC	ENSG00000135018				118	0	0	114	9	7.31707
HNRNPK	0	genome.wustl.edu	37	9	86585141	86585141	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	86585141	86585141	G	A	SNP	HNRNPK	ENST00000376263	human	ensembl	74_37	-1	known	missense	c.1297	p.R433W	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,pfam_ROK_N,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	HNRNPK	HGNC	ENSG00000165119				76	0	0	75	4	5.06329
NTRK2	0	genome.wustl.edu	37	9	87486727	87486727	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	87486727	87486727	G	A	SNP	NTRK2	ENST00000304053	human	ensembl	74_37	+1	known	missense	c.1657	p.A553T	1.000	NULL	pfam_Ig_I-set,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom,prints_Tyr_kinase_NGF_rcpt,prints_Tyr_kin_neurotrophic_rcpt_2	-	no_errors	NTRK2	HGNC	ENSG00000148053				193	0	0	129	48	27.1186
DAPK1	0	genome.wustl.edu	37	9	90255318	90255318	+	Silent	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	90255318	90255318	T	C	SNP	DAPK1	ENST00000469640	human	ensembl	74_37	+1	known	silent	c.735	p.S245	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ankyrin_rpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death_domain,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Ankyrin_rpt,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_Prot_kinase_dom,prints_Ankyrin_rpt	-	no_errors	DAPK1	HGNC	ENSG00000196730				76	0	0	55	23	29.4872
SPATA31E1	0	genome.wustl.edu	37	9	90502104	90502104	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	90502104	90502104	A	T	SNP	SPATA31E1	ENST00000325643	human	ensembl	74_37	+1	known	missense	c.2702	p.N901I	0.000	NULL	NULL	-	no_errors	SPATA31E1	HGNC	ENSG00000177992				43	0	0	26	13	33.3333
SPATA31C1	0	genome.wustl.edu	37	9	90534188	90534188	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	90534188	90534188	C	T	SNP	SPATA31C1	ENST00000602681	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	SPATA31C1	HGNC	ENSG00000230246				110	0	0	66	21	24.1379
CDK20	0	genome.wustl.edu	37	9	90585726	90585726	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	90585726	90585726	G	A	SNP	CDK20	ENST00000325303	human	ensembl	74_37	-1	known	silent	c.465	p.D155	0.949	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK20	HGNC	ENSG00000156345				27	0	0	13	5	27.7778
SHC3	0	genome.wustl.edu	37	9	91628425	91628425	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	91628425	91628425	G	A	SNP	SHC3	ENST00000375835	human	ensembl	74_37	-1	known	silent	c.1722	p.S574	0.708	smart_SH2,pfscan_SH2	pfam_PTB/PI_dom,pfam_SH2,smart_PTB/PI_dom,smart_SH2,pfscan_PTB/PI_dom,pfscan_SH2,prints_PID_Shc-like,prints_SH2	-	no_errors	SHC3	HGNC	ENSG00000148082				77	0	0	54	16	22.8571
SEMA4D	0	genome.wustl.edu	37	9	92011708	92011708	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	92011708	92011708	C	T	SNP	SEMA4D	ENST00000356444	human	ensembl	74_37	-1	known	missense	c.358	p.A120T	0.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Plexin_repeat,pfam_Immunoglobulin,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Ig_sub,smart_Ig_sub2,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA4D	HGNC	ENSG00000187764				31	0	0	18	4	18.1818
AUH	0	genome.wustl.edu	37	9	93983211	93983211	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	93983211	93983211	G	A	SNP	AUH	ENST00000375731	human	ensembl	74_37	-1	known	missense	c.719	p.A240V	0.996	pfam_Crotonase_core_superfam	pfam_Crotonase_core_superfam	-	no_errors	AUH	HGNC	ENSG00000148090				96	0	0	53	24	31.1688
IARS	0	genome.wustl.edu	37	9	95007334	95007334	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	95007334	95007334	G	A	SNP	IARS	ENST00000375643	human	ensembl	74_37	-1	known	silent	c.2811	p.G937	0.998	NULL	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Methionyl/Leucyl_tRNA_Synth,superfamily_Val/Leu/Ile-tRNA-synth_edit,superfamily_tRNAsynth_1a_anticodon-bd,prints_Ile-tRNA-ligase,tigrfam_Ile-tRNA-ligase	-	no_errors	IARS	HGNC	ENSG00000196305				88	0	0	56	15	21.1268
CENPP	0	genome.wustl.edu	37	9	95142122	95142122	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	95142122	95142122	G	A	SNP	CENPP	ENST00000375587	human	ensembl	74_37	+1	known	missense	c.545	p.R182H	0.011	NULL	NULL	-	no_errors	CENPP	HGNC	ENSG00000188312				72	0	0	73	5	6.41026
BICD2	0	genome.wustl.edu	37	9	95481525	95481525	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	95481525	95481525	C	T	SNP	BICD2	ENST00000356884	human	ensembl	74_37	-1	known	missense	c.1402	p.A468T	0.021	pfam_Bicaudal-D_microtubule-assoc	pfam_Bicaudal-D_microtubule-assoc	-	no_errors	BICD2	HGNC	ENSG00000185963				44	0	0	27	10	27.027
ZNF484	0	genome.wustl.edu	37	9	95610226	95610226	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	95610226	95610226	G	A	SNP	ZNF484	ENST00000395506	human	ensembl	74_37	-1	known	silent	c.849	p.C283	0.805	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF484	HGNC	ENSG00000127081				110	0	0	83	6	6.74157
ENSG00000226668	0	genome.wustl.edu	37	9	95644872	95644872	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	95644872	95644872	C	T	SNP	ENSG00000226668	ENST00000411450	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP11-526D8.7	Clone_based_vega_gene	ENSG00000226668				39	0	0	38	13	25.4902
ENSG00000226668	0	genome.wustl.edu	37	9	95647729	95647729	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	95647729	95647729	G	A	SNP	ENSG00000226668	ENST00000446878	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.019	-	-	-	no_errors	RP11-526D8.7	Clone_based_vega_gene	ENSG00000226668				170	0	0	138	48	25.8065
WNK2	0	genome.wustl.edu	37	9	96009888	96009888	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	96009888	96009888	G	A	SNP	WNK2	ENST00000297954	human	ensembl	74_37	+1	known	missense	c.1606	p.V536M	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK2	HGNC	ENSG00000165238				19	0	0	8	6	42.8571
C9orf129	0	genome.wustl.edu	37	9	96081439	96081439	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	96081439	96081439	C	T	SNP	C9orf129	ENST00000375419	human	ensembl	74_37	-1	known	missense	c.383	p.G128E	1.000	NULL	NULL	-	no_errors	C9orf129	HGNC	ENSG00000204352				64	0	0	54	17	23.9437
FAM120A	0	genome.wustl.edu	37	9	96324555	96324555	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	96324555	96324555	G	A	SNP	FAM120A	ENST00000333936	human	ensembl	74_37	+1	known	missense	c.3098	p.G1033D	1.000	NULL	NULL	-	no_errors	FAM120A	HGNC	ENSG00000048828				76	0	0	37	17	31.4815
PHF2	0	genome.wustl.edu	37	9	96415473	96415473	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	96415473	96415473	C	T	SNP	PHF2	ENST00000359246	human	ensembl	74_37	+1	known	silent	c.615	p.F205	0.943	smart_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF2	HGNC	ENSG00000197724				46	0	0	41	12	22.6415
ZNF510	0	genome.wustl.edu	37	9	99522503	99522503	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	99522503	99522503	G	A	SNP	ZNF510	ENST00000223428	human	ensembl	74_37	-1	known	silent	c.609	p.C203	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF510	HGNC	ENSG00000081386				76	0	0	57	6	9.52381
NUTM2G	0	genome.wustl.edu	37	9	99700170	99700170	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	99700170	99700170	G	A	SNP	NUTM2G	ENST00000372322	human	ensembl	74_37	+1	known	missense	c.1327	p.E443K	0.845	NULL	NULL	-	no_errors	NUTM2G	HGNC	ENSG00000188152				109	0	0	62	18	22.5
MT-RNR2	0	genome.wustl.edu	37	MT	2076	2076	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	MT	2076	2076	C	T	SNP	MT-RNR2	ENST00000387347	human	ensembl	74_37	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors	MT-RNR2	HGNC	ENSG00000210082				688	2	0.289855	868	65	6.96677
NOX1	0	genome.wustl.edu	37	X	100105262	100105262	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	100105262	100105262	C	T	SNP	NOX1	ENST00000372966	human	ensembl	74_37	-1	known	nonsense	c.1011	p.W337*	1.000	pfam_FAD-bd_8,pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl	pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl,prints_Cyt_b245_heavy_chain	-	no_errors	NOX1	HGNC	ENSG00000007952				36	0	0	29	4	12.1212
TRMT2B	0	genome.wustl.edu	37	X	100297067	100297067	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	100297067	100297067	C	A	SNP	TRMT2B	ENST00000372935	human	ensembl	74_37	-1	known	missense	c.212	p.S71I	0.018	NULL	pfam_U5_MeTrfase,pfam_Small_mtfrase_dom	-	no_errors	TRMT2B	HGNC	ENSG00000188917				54	0	0	51	8	13.5593
DRP2	0	genome.wustl.edu	37	X	100505442	100505442	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	100505442	100505442	G	A	SNP	DRP2	ENST00000395209	human	ensembl	74_37	+1	known	missense	c.1571	p.S524N	1.000	pfam_EF-hand_dom_typ2,pirsf_Dystrophin-related_2	pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_Znf_ZZ,pfam_Spectrin_repeat,pfam_WW_dom,superfamily_WW_dom,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin-related_2,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DRP2	HGNC	ENSG00000102385				47	0	0	29	5	14.7059
WWC3	0	genome.wustl.edu	37	X	10085205	10085205	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	10085205	10085205	G	A	SNP	WWC3	ENST00000380861	human	ensembl	74_37	+1	known	missense	c.1106	p.R369H	0.998	NULL	superfamily_C2_dom	-	no_errors	WWC3	HGNC	ENSG00000047644				24	0	0	4	14	77.7778
ARMCX3	0	genome.wustl.edu	37	X	100879869	100879869	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	100879869	100879869	C	T	SNP	ARMCX3	ENST00000467808	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.337	-	-	-	no_errors	ARMCX3	HGNC	ENSG00000102401				13	0	0	5	11	68.75
WWC3	0	genome.wustl.edu	37	X	10092342	10092342	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	10092342	10092342	G	A	SNP	WWC3	ENST00000380861	human	ensembl	74_37	+1	known	missense	c.1789	p.A597T	0.000	superfamily_C2_dom	superfamily_C2_dom	-	no_errors	WWC3	HGNC	ENSG00000047644				44	0	0	44	9	16.9811
NXF3	0	genome.wustl.edu	37	X	102339721	102339721	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	102339721	102339721	C	T	SNP	NXF3	ENST00000395065	human	ensembl	74_37	-1	known	missense	c.119	p.G40D	0.001	NULL	pfam_Tap_RNA-bd,pfam_NTF2,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	NXF3	HGNC	ENSG00000147206				126	0	0	127	15	10.5634
NRK	0	genome.wustl.edu	37	X	105178303	105178303	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	105178303	105178303	G	A	SNP	NRK	ENST00000428173	human	ensembl	74_37	+1	known	silent	c.3369	p.P1123	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Citron,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom	-	no_errors	NRK	HGNC	ENSG00000123572				55	0	0	8	39	82.9787
MID1	0	genome.wustl.edu	37	X	10535114	10535114	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	10535114	10535114	G	A	SNP	MID1	ENST00000317552	human	ensembl	74_37	-1	known	silent	c.474	p.G158	1.000	smart_Znf_B-box	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	MID1	HGNC	ENSG00000101871				42	0	0	20	21	51.2195
MUM1L1	0	genome.wustl.edu	37	X	105450135	105450135	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	105450135	105450135	C	T	SNP	MUM1L1	ENST00000337685	human	ensembl	74_37	+1	known	missense	c.710	p.A237V	0.000	NULL	superfamily_PyrdxlP-dep_Trfase	-	no_errors	MUM1L1	HGNC	ENSG00000157502				36	0	0	19	5	20.8333
TSC22D3	0	genome.wustl.edu	37	X	106965110	106965110	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	106965110	106965110	C	T	SNP	TSC22D3	ENST00000372382	human	ensembl	74_37	-1	putative	missense	c.29	p.S10N	1.000	NULL	pfam_TSC-22_Dip_Bun	-	no_errors	TSC22D3	HGNC	ENSG00000157514				10	0	0	2	4	66.6667
PSMD10	0	genome.wustl.edu	37	X	107331059	107331059	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	107331059	107331059	G	A	SNP	PSMD10	ENST00000217958	human	ensembl	74_37	-1	known	silent	c.384	p.G128	0.052	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	PSMD10	HGNC	ENSG00000101843				87	0	0	52	48	48
COL4A6	0	genome.wustl.edu	37	X	107422584	107422584	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	107422584	107422584	C	T	SNP	COL4A6	ENST00000372216	human	ensembl	74_37	-1	known	missense	c.2219	p.S740N	0.011	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A6	HGNC	ENSG00000197565				31	0	0	17	14	45.1613
GUCY2F	0	genome.wustl.edu	37	X	108691393	108691393	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	108691393	108691393	G	A	SNP	GUCY2F	ENST00000218006	human	ensembl	74_37	-1	known	missense	c.1474	p.R492C	0.494	NULL	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Haem_no_assoc-bd,superfamily_Peripla_BP_I,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_A/G_cyclase	-	no_errors	GUCY2F	HGNC	ENSG00000101890				38	0	0	19	16	45.7143
GUCY2F	0	genome.wustl.edu	37	X	108719095	108719095	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	108719095	108719095	T	C	SNP	GUCY2F	ENST00000218006	human	ensembl	74_37	-1	known	missense	c.71	p.H24R	0.044	NULL	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Haem_no_assoc-bd,superfamily_Peripla_BP_I,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_A/G_cyclase	-	no_errors	GUCY2F	HGNC	ENSG00000101890				78	0	0	71	6	7.79221
ACSL4	0	genome.wustl.edu	37	X	108887403	108887403	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	108887403	108887403	C	T	SNP	ACSL4	ENST00000340800	human	ensembl	74_37	-1	known	missense	c.1991	p.R664Q	1.000	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSL4	HGNC	ENSG00000068366				26	0	0	9	12	57.1429
RGAG1	0	genome.wustl.edu	37	X	109695400	109695400	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	109695400	109695400	G	T	SNP	RGAG1	ENST00000465301	human	ensembl	74_37	+1	known	missense	c.1555	p.A519S	0.011	NULL	NULL	-	no_errors	RGAG1	HGNC	ENSG00000243978				163	0	0	77	90	53.8922
ZCCHC16	0	genome.wustl.edu	37	X	111698834	111698834	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	111698834	111698834	G	A	SNP	ZCCHC16	ENST00000340433	human	ensembl	74_37	+1	known	missense	c.878	p.C293Y	1.000	superfamily_Znf_CCHC,pfscan_Znf_CCHC	superfamily_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC16	HGNC	ENSG00000187823				51	0	0	46	7	13.2075
LUZP4	0	genome.wustl.edu	37	X	114536676	114536676	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	114536676	114536676	C	T	SNP	LUZP4	ENST00000371920	human	ensembl	74_37	+1	known	missense	c.211	p.R71C	0.000	NULL	NULL	-	no_errors	LUZP4	HGNC	ENSG00000102021				200	0	0	95	106	52.7363
LUZP4	0	genome.wustl.edu	37	X	114540908	114540908	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	114540908	114540908	C	T	SNP	LUZP4	ENST00000371920	human	ensembl	74_37	+1	known	nonsense	c.481	p.R161*	0.000	NULL	NULL	-	no_errors	LUZP4	HGNC	ENSG00000102021				95	0	0	55	55	50
PLS3	0	genome.wustl.edu	37	X	114877715	114877715	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	114877715	114877715	A	G	SNP	PLS3	ENST00000355899	human	ensembl	74_37	+1	known	missense	c.1078	p.S360G	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_EF_hand_dom,smart_CH-domain,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	PLS3	HGNC	ENSG00000102024				79	0	0	32	37	53.6232
AGTR2	0	genome.wustl.edu	37	X	115303556	115303556	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	115303556	115303556	C	T	SNP	AGTR2	ENST00000371906	human	ensembl	74_37	+1	known	missense	c.23	p.A8V	0.012	prints_ATII_AT2_rcpt	pfam_GPCR_Rhodpsn,prints_ATII_AT2_rcpt,prints_GPCR_Rhodpsn,prints_ATII_rcpt,prints_Brdyknn_rcpt,prints_Chemokine_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	AGTR2	HGNC	ENSG00000180772				63	0	0	44	10	18.5185
DOCK11	0	genome.wustl.edu	37	X	117722426	117722426	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	117722426	117722426	C	T	SNP	DOCK11	ENST00000276202	human	ensembl	74_37	+1	known	silent	c.2031	p.D677	0.124	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK11	HGNC	ENSG00000147251				87	0	0	34	50	59.5238
DOCK11	0	genome.wustl.edu	37	X	117773400	117773400	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	117773400	117773400	T	C	SNP	DOCK11	ENST00000276202	human	ensembl	74_37	+1	known	missense	c.4004	p.V1335A	0.973	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK11	HGNC	ENSG00000147251				44	0	0	41	8	16.3265
NKRF	0	genome.wustl.edu	37	X	118723342	118723342	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	118723342	118723342	G	A	SNP	NKRF	ENST00000542113	human	ensembl	74_37	-1	known	silent	c.2091	p.Y697	0.947	NULL	pfam_G_patch_dom,pfam_R3H_ss-bd,smart_dsRNA-bd_dom,smart_G_patch_dom,smart_R3H_ss-bd,pfscan_G_patch_dom,pfscan_R3H_ss-bd	-	no_errors	NKRF	HGNC	ENSG00000186416				30	0	0	44	7	13.7255
TMEM255A	0	genome.wustl.edu	37	X	119419030	119419030	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	119419030	119419030	C	T	SNP	TMEM255A	ENST00000309720	human	ensembl	74_37	-1	known	missense	c.536	p.R179H	1.000	NULL	NULL	-	no_errors	TMEM255A	HGNC	ENSG00000125355				102	0	0	78	28	26.4151
ATP1B4	0	genome.wustl.edu	37	X	119504981	119504981	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	119504981	119504981	G	A	SNP	ATP1B4	ENST00000218008	human	ensembl	74_37	+1	known	missense	c.478	p.A160T	1.000	pfam_Na/K_ATPase_sub_beta,tigrfam_Na/K_ATPase_sub_beta	pfam_Na/K_ATPase_sub_beta,tigrfam_Na/K_ATPase_sub_beta	-	no_errors	ATP1B4	HGNC	ENSG00000101892				48	0	0	60	10	14.2857
C1GALT1C1	0	genome.wustl.edu	37	X	119760637	119760637	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	119760637	119760637	C	T	SNP	C1GALT1C1	ENST00000304661	human	ensembl	74_37	-1	known	missense	c.385	p.A129T	1.000	NULL	NULL	-	no_errors	C1GALT1C1	HGNC	ENSG00000171155				61	0	0	58	7	10.7692
GRIA3	0	genome.wustl.edu	37	X	122537363	122537363	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	122537363	122537363	C	T	SNP	GRIA3	ENST00000264357	human	ensembl	74_37	+1	known	missense	c.1286	p.T429I	1.000	smart_Iontro_glu_rcpt	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA3	HGNC	ENSG00000125675				95	0	0	118	8	6.34921
STAG2	0	genome.wustl.edu	37	X	123185030	123185030	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	123185030	123185030	G	A	SNP	STAG2	ENST00000218089	human	ensembl	74_37	+1	known	silent	c.1077	p.E359	1.000	superfamily_ARM-type_fold	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG2	HGNC	ENSG00000101972				35	0	0	16	16	50
STAG2	0	genome.wustl.edu	37	X	123229279	123229279	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	123229279	123229279	G	A	SNP	STAG2	ENST00000218089	human	ensembl	74_37	+1	known	missense	c.3763	p.A1255T	1.000	NULL	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG2	HGNC	ENSG00000101972				53	0	0	32	25	43.8596
TENM1	0	genome.wustl.edu	37	X	123514894	123514894	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	123514894	123514894	G	A	SNP	TENM1	ENST00000422452	human	ensembl	74_37	-1	known	missense	c.7691	p.A2564V	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	TENM1	HGNC	ENSG00000009694				78	0	0	54	5	8.47458
TENM1	0	genome.wustl.edu	37	X	123517988	123517988	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	123517988	123517988	C	T	SNP	TENM1	ENST00000422452	human	ensembl	74_37	-1	known	missense	c.6793	p.A2265T	0.960	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	TENM1	HGNC	ENSG00000009694				70	0	0	46	36	43.9024
TENM1	0	genome.wustl.edu	37	X	123539084	123539084	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	123539084	123539084	C	T	SNP	TENM1	ENST00000422452	human	ensembl	74_37	-1	known	missense	c.5188	p.D1730N	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	TENM1	HGNC	ENSG00000009694				39	0	0	28	7	20
TENM1	0	genome.wustl.edu	37	X	123556366	123556366	+	Silent	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	123556366	123556366	G	T	SNP	TENM1	ENST00000422452	human	ensembl	74_37	-1	known	silent	c.4227	p.R1409	0.920	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	TENM1	HGNC	ENSG00000009694				40	0	0	31	32	50.7937
DCAF12L2	0	genome.wustl.edu	37	X	125299778	125299778	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	125299778	125299778	G	A	SNP	DCAF12L2	ENST00000360028	human	ensembl	74_37	-1	known	missense	c.130	p.R44W	0.733	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF12L2	HGNC	ENSG00000198354				11	0	0	10	4	28.5714
DCAF12L1	0	genome.wustl.edu	37	X	125686328	125686328	+	Silent	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	125686328	125686328	C	A	SNP	DCAF12L1	ENST00000371126	human	ensembl	74_37	-1	known	silent	c.264	p.T88	0.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF12L1	HGNC	ENSG00000198889				23	0	0	6	11	64.7059
FRMPD4	0	genome.wustl.edu	37	X	12712493	12712493	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	12712493	12712493	T	C	SNP	FRMPD4	ENST00000380682	human	ensembl	74_37	+1	known	missense	c.853	p.F285L	1.000	smart_Band_41_domain,pfscan_FERM_domain	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ,pfscan_WW_dom	-	no_errors	FRMPD4	HGNC	ENSG00000169933				43	0	0	23	14	37.8378
FRMPD4	0	genome.wustl.edu	37	X	12736508	12736508	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	12736508	12736508	C	T	SNP	FRMPD4	ENST00000380682	human	ensembl	74_37	+1	known	missense	c.3563	p.A1188V	0.919	NULL	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ,pfscan_WW_dom	-	no_errors	FRMPD4	HGNC	ENSG00000169933				99	0	0	90	14	13.4615
OCRL	0	genome.wustl.edu	37	X	128696607	128696607	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	128696607	128696607	T	C	SNP	OCRL	ENST00000371113	human	ensembl	74_37	+1	known	missense	c.1088	p.V363A	0.998	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	pfam_Endo/exonuclease/phosphatase,pfam_RhoGAP_dom,superfamily_Endo/exonuclease/phosphatase,superfamily_Rho_GTPase_activation_prot,smart_IPPc,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	OCRL	HGNC	ENSG00000122126				48	0	0	83	8	8.79121
OCRL	0	genome.wustl.edu	37	X	128718327	128718327	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	128718327	128718327	G	A	SNP	OCRL	ENST00000371113	human	ensembl	74_37	+1	known	missense	c.2122	p.D708N	1.000	superfamily_Rho_GTPase_activation_prot	pfam_Endo/exonuclease/phosphatase,pfam_RhoGAP_dom,superfamily_Endo/exonuclease/phosphatase,superfamily_Rho_GTPase_activation_prot,smart_IPPc,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	OCRL	HGNC	ENSG00000122126				51	0	0	61	6	8.95522
TLR7	0	genome.wustl.edu	37	X	12905875	12905875	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	12905875	12905875	C	T	SNP	TLR7	ENST00000380659	human	ensembl	74_37	+1	known	nonsense	c.2248	p.R750*	0.892	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_TIR_dom,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR7	HGNC	ENSG00000196664				73	0	0	27	28	50.9091
RBMX2	0	genome.wustl.edu	37	X	129546424	129546424	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	129546424	129546424	C	T	SNP	RBMX2	ENST00000305536	human	ensembl	74_37	+1	known	missense	c.571	p.R191C	0.037	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBMX2	HGNC	ENSG00000134597				82	0	0	54	22	28.9474
RBMX2	0	genome.wustl.edu	37	X	129546773	129546773	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	129546773	129546773	G	A	SNP	RBMX2	ENST00000305536	human	ensembl	74_37	+1	known	missense	c.920	p.R307H	0.008	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBMX2	HGNC	ENSG00000134597				35	0	0	21	19	47.5
IGSF1	0	genome.wustl.edu	37	X	130415705	130415705	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	130415705	130415705	C	T	SNP	IGSF1	ENST00000370903	human	ensembl	74_37	-1	known	missense	c.1460	p.R487H	0.009	smart_Ig_sub,smart_Ig_sub2	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	IGSF1	HGNC	ENSG00000147255				50	0	0	49	6	10.9091
MOSPD1	0	genome.wustl.edu	37	X	134033217	134033217	+	RNA	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	134033217	134033217	G	A	SNP	MOSPD1	ENST00000462060	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.020	-	-	-	no_errors	MOSPD1	HGNC	ENSG00000101928				78	0	0	86	15	14.8515
ZNF75D	0	genome.wustl.edu	37	X	134421741	134421741	+	Silent	SNP	A	A	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	134421741	134421741	A	C	SNP	ZNF75D	ENST00000370766	human	ensembl	74_37	-1	known	silent	c.861	p.P287	0.000	smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF75D	HGNC	ENSG00000186376				44	0	0	34	11	24.4444
HTATSF1	0	genome.wustl.edu	37	X	135593613	135593613	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	135593613	135593613	T	C	SNP	HTATSF1	ENST00000218364	human	ensembl	74_37	+1	known	missense	c.1709	p.L570P	0.001	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HTATSF1	HGNC	ENSG00000102241				85	0	0	83	10	10.7527
OFD1	0	genome.wustl.edu	37	X	13786260	13786260	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	13786260	13786260	G	A	SNP	OFD1	ENST00000340096	human	ensembl	74_37	+1	known	missense	c.2845	p.D949N	0.000	NULL	superfamily_Lipoprotein_6,smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	OFD1	HGNC	ENSG00000046651				30	0	0	15	18	54.5455
F9	0	genome.wustl.edu	37	X	138644001	138644001	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	138644001	138644001	C	T	SNP	F9	ENST00000218099	human	ensembl	74_37	+1	known	missense	c.1157	p.T386I	0.987	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pirsf_Pept_S1A_FX,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_GLA_domain,pfam_EG-like_dom,superfamily_Trypsin-like_Pept_dom,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Peptidase_S1,pirsf_Pept_S1A_FX,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Peptidase_S1,prints_Peptidase_S1A,prints_GLA_domain	-	no_errors	F9	HGNC	ENSG00000101981				79	0	0	82	13	13.6842
ATP11C	0	genome.wustl.edu	37	X	138844225	138844225	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	138844225	138844225	G	A	SNP	ATP11C	ENST00000327569	human	ensembl	74_37	-1	known	silent	c.2544	p.S848	0.770	superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP11C	HGNC	ENSG00000101974				120	0	0	72	51	41.4634
CSF2RA	0	genome.wustl.edu	37	X	1422885	1422885	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	1422885	1422885	G	A	SNP	CSF2RA	ENST00000417535	human	ensembl	74_37	+1	known	missense	c.1118	p.G373D	0.000	NULL	pfam_IL-6_rcpt_alpha-bd,superfamily_Fibronectin_type3	-	no_errors	CSF2RA	HGNC	ENSG00000198223				253	0	0	160	11	6.43275
MIR891A	0	genome.wustl.edu	37	X	145109366	145109366	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	145109366	145109366	C	T	SNP	MIR891A	ENST00000401237	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	MIR891A	HGNC	ENSG00000216056				38	0	0	29	13	30.9524
IL3RA	0	genome.wustl.edu	37	X	1471219	1471219	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	1471219	1471219	C	T	SNP	IL3RA	ENST00000331035	human	ensembl	74_37	+1	known	missense	c.436	p.R146C	0.000	pfam_IL-6_rcpt_alpha-bd,superfamily_Fibronectin_type3	pfam_IL-6_rcpt_alpha-bd,superfamily_Fibronectin_type3	-	no_errors	IL3RA	HGNC	ENSG00000185291				274	0	0	85	62	42.1769
IDS	0	genome.wustl.edu	37	X	148564576	148564576	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	148564576	148564576	A	G	SNP	IDS	ENST00000340855	human	ensembl	74_37	-1	known	missense	c.1354	p.Y452H	0.000	superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	IDS	HGNC	ENSG00000010404				61	0	0	57	4	6.55738
MAGEA8	0	genome.wustl.edu	37	X	149013852	149013852	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	149013852	149013852	C	A	SNP	MAGEA8	ENST00000286482	human	ensembl	74_37	+1	known	missense	c.806	p.P269H	0.067	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA8	HGNC	ENSG00000156009				108	0	0	59	62	51.2397
MTMR1	0	genome.wustl.edu	37	X	149901140	149901140	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	149901140	149901140	G	A	SNP	MTMR1	ENST00000445323	human	ensembl	74_37	+1	known	missense	c.1018	p.A340T	1.000	pfam_Myotubularin-like_Pase_dom	pfam_Myotubularin-like_Pase_dom,pfam_GRAM,smart_GRAM,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase	-	no_errors	MTMR1	HGNC	ENSG00000063601				27	0	0	21	18	46.1538
SLC25A6	0	genome.wustl.edu	37	X	1505554	1505554	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	1505554	1505554	G	A	SNP	SLC25A6	ENST00000381401	human	ensembl	74_37	-1	known	missense	c.838	p.R280W	0.773	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier,prints_Aden_trnslctor,prints_Mit_uncoupling	-	no_errors	SLC25A6	HGNC	ENSG00000169100				120	0	0	46	21	31.3433
GABRE	0	genome.wustl.edu	37	X	151123859	151123859	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	151123859	151123859	G	T	SNP	GABRE	ENST00000370328	human	ensembl	74_37	-1	known	missense	c.1118	p.A373D	0.034	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAAe_rcpt,prints_GABBAg_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAe_rcpt,prints_GABAAa_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRE	HGNC	ENSG00000102287				79	0	0	60	18	23.0769
GABRA3	0	genome.wustl.edu	37	X	151358341	151358341	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	151358341	151358341	G	A	SNP	GABRA3	ENST00000370314	human	ensembl	74_37	-1	known	missense	c.1004	p.A335V	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABBAa3_rcpt,prints_GABAA_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRA3	HGNC	ENSG00000011677				44	0	0	38	14	26.9231
GABRQ	0	genome.wustl.edu	37	X	151821085	151821085	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	151821085	151821085	C	T	SNP	GABRQ	ENST00000370306	human	ensembl	74_37	+1	known	missense	c.1240	p.L414F	0.075	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAt_rcpt,prints_GABAA_rcpt,prints_Neur_channel,prints_GABAAb_rcpt,prints_GABAAa_rcpt,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRQ	HGNC	ENSG00000147402				41	0	0	22	10	31.25
CETN2	0	genome.wustl.edu	37	X	151998218	151998218	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	151998218	151998218	C	T	SNP	CETN2	ENST00000370277	human	ensembl	74_37	-1	known	silent	c.90	p.K30	0.769	pfscan_EF_hand_dom	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	CETN2	HGNC	ENSG00000147400				83	0	0	48	9	15.7895
NSDHL	0	genome.wustl.edu	37	X	152034374	152034374	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	152034374	152034374	C	T	SNP	NSDHL	ENST00000370274	human	ensembl	74_37	+1	known	silent	c.555	p.G185	0.000	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_dTDP_dehydrorham_reduct,pfam_Male_sterile_NAD-bd	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_dTDP_dehydrorham_reduct,pfam_Male_sterile_NAD-bd,pfam_Polysac_CapD-like,pfam_NmrA	-	no_errors	NSDHL	HGNC	ENSG00000147383				57	0	0	57	10	14.9254
ZNF275	0	genome.wustl.edu	37	X	152613249	152613249	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	152613249	152613249	G	A	SNP	ZNF275	ENST00000440091	human	ensembl	74_37	+1	known	missense	c.1196	p.R399H	0.997	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF275	HGNC	ENSG00000063587				11	0	0	8	4	33.3333
IDH3G	0	genome.wustl.edu	37	X	153053556	153053556	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	153053556	153053556	C	T	SNP	IDH3G	ENST00000217901	human	ensembl	74_37	-1	known	silent	c.381	p.S127	0.577	pfam_IsoPropMal-DH-like_dom,tigrfam_Isocitrate_DH_NAD	pfam_IsoPropMal-DH-like_dom,tigrfam_Isocitrate_DH_NAD	-	no_errors	IDH3G	HGNC	ENSG00000067829				155	0	0	84	63	42.8571
IRAK1	0	genome.wustl.edu	37	X	153282484	153282484	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	153282484	153282484	C	T	SNP	IRAK1	ENST00000369980	human	ensembl	74_37	-1	known	missense	c.944	p.R315Q	0.979	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death_domain,superfamily_Kinase-like_dom,superfamily_DEATH-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	IRAK1	HGNC	ENSG00000184216				39	0	0	20	21	51.2195
PLXNA3	0	genome.wustl.edu	37	X	153689070	153689070	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	153689070	153689070	T	G	SNP	PLXNA3	ENST00000369682	human	ensembl	74_37	+1	known	missense	c.547	p.S183A	1.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA3	HGNC	ENSG00000130827				47	0	0	59	5	7.8125
PLXNA3	0	genome.wustl.edu	37	X	153697254	153697254	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	153697254	153697254	C	T	SNP	PLXNA3	ENST00000369682	human	ensembl	74_37	+1	known	missense	c.4376	p.A1459V	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA3	HGNC	ENSG00000130827				41	0	0	30	17	36.1702
H2AFB1	0	genome.wustl.edu	37	X	154113536	154113536	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	154113536	154113536	C	T	SNP	H2AFB1	ENST00000354461	human	ensembl	74_37	+1	known	missense	c.212	p.A71V	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	H2AFB1	HGNC	ENSG00000198082				53	0	0	31	24	43.6364
F8	0	genome.wustl.edu	37	X	154159120	154159120	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	154159120	154159120	T	C	SNP	F8	ENST00000360256	human	ensembl	74_37	-1	known	missense	c.2945	p.N982S	0.003	NULL	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F8	HGNC	ENSG00000185010				55	0	0	70	5	6.66667
TMLHE	0	genome.wustl.edu	37	X	154754277	154754277	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	154754277	154754277	A	T	SNP	TMLHE	ENST00000334398	human	ensembl	74_37	-1	known	missense	c.198	p.N66K	0.470	pfam_DUF971	pfam_Taurine_dOase,pfam_DUF971,tigrfam_Trimethyllysine_dOase	-	no_errors	TMLHE	HGNC	ENSG00000185973				77	0	0	67	18	21.1765
SPRY3	0	genome.wustl.edu	37	X	155003998	155003998	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	155003998	155003998	C	T	SNP	SPRY3	ENST00000302805	human	ensembl	74_37	+1	known	silent	c.465	p.C155	0.893	pfam_Sprouty	pfam_Sprouty	-	no_errors	SPRY3	HGNC	ENSG00000168939				79	0	0	59	11	15.7143
NHS	0	genome.wustl.edu	37	X	17746817	17746817	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	17746817	17746817	C	A	SNP	NHS	ENST00000380060	human	ensembl	74_37	+1	known	missense	c.4208	p.S1403Y	1.000	NULL	NULL	-	no_errors	NHS	HGNC	ENSG00000188158				84	0	0	41	27	39.7059
CDKL5	0	genome.wustl.edu	37	X	18668576	18668576	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	18668576	18668576	C	T	SNP	CDKL5	ENST00000379989	human	ensembl	74_37	+1	known	silent	c.2844	p.C948	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDKL5	HGNC	ENSG00000008086				56	0	0	47	4	7.84314
PPEF1	0	genome.wustl.edu	37	X	18824564	18824564	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	18824564	18824564	G	A	SNP	PPEF1	ENST00000361511	human	ensembl	74_37	+1	known	missense	c.1295	p.S432N	1.000	smart_Ser/Thr-sp_prot-phosphatase,pirsf_Ser/Thr-Pase_EF-hand_contain,prints_Ser/Thr-sp_prot-phosphatase	pfam_PEstase_dom,pfam_EF_hand_dom,pfam_PPP_dom,pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,smart_Ser/Thr-sp_prot-phosphatase,smart_EF_hand_dom,pirsf_Ser/Thr-Pase_EF-hand_contain,pfscan_EF_hand_dom,pfscan_IQ_motif_EF-hand-BS,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPEF1	HGNC	ENSG00000086717				114	0	0	79	11	12.2222
PHKA2	0	genome.wustl.edu	37	X	18927018	18927018	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	18927018	18927018	T	C	SNP	PHKA2	ENST00000379942	human	ensembl	74_37	-1	known	missense	c.2261	p.D754G	1.000	pfam_Glyco_hydro_15	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	-	no_errors	PHKA2	HGNC	ENSG00000044446				148	0	0	141	10	6.62252
PDHA1	0	genome.wustl.edu	37	X	19372612	19372612	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	19372612	19372612	C	T	SNP	PDHA1	ENST00000379806	human	ensembl	74_37	+1	known	missense	c.628	p.P210S	1.000	pfam_DH_E1,tigrfam_Pyrv_DH_E1_asu_subgrp-y	pfam_DH_E1,tigrfam_Pyrv_DH_E1_asu_subgrp-y	-	no_errors	PDHA1	HGNC	ENSG00000131828				59	0	0	45	6	11.7647
SH3KBP1	0	genome.wustl.edu	37	X	19560086	19560086	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	19560086	19560086	G	A	SNP	SH3KBP1	ENST00000397821	human	ensembl	74_37	-1	known	missense	c.1849	p.R617C	0.989	NULL	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_p67phox,prints_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SH3KBP1	HGNC	ENSG00000147010				62	0	0	11	42	79.2453
SH3KBP1	0	genome.wustl.edu	37	X	19649997	19649997	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	19649997	19649997	G	A	SNP	SH3KBP1	ENST00000397821	human	ensembl	74_37	-1	known	silent	c.882	p.V294	0.999	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain,prints_Spectrin_alpha_SH3	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_p67phox,prints_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SH3KBP1	HGNC	ENSG00000147010				67	0	0	54	8	12.9032
SH3KBP1	0	genome.wustl.edu	37	X	19705743	19705743	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	19705743	19705743	C	T	SNP	SH3KBP1	ENST00000379697	human	ensembl	74_37	-1	known	missense	c.644	p.R215H	1.000	NULL	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_p67phox,prints_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SH3KBP1	HGNC	ENSG00000147010				79	0	0	26	42	61.7647
PTCHD1	0	genome.wustl.edu	37	X	23397938	23397938	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	23397938	23397938	C	T	SNP	PTCHD1	ENST00000379361	human	ensembl	74_37	+1	known	silent	c.582	p.G194	0.316	pfam_Patched	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD1	HGNC	ENSG00000165186				86	0	0	42	45	51.7241
ZBED1	0	genome.wustl.edu	37	X	2408097	2408097	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	2408097	2408097	C	T	SNP	ZBED1	ENST00000381218	human	ensembl	74_37	-1	known	missense	c.664	p.A222T	0.000	superfamily_RNaseH-like_dom	pfam_HATC_dom_C,pfam_Znf_BED_prd,superfamily_RNaseH-like_dom,smart_Znf_BED_prd,pfscan_Znf_BED_prd	-	no_errors	ZBED1	HGNC	ENSG00000214717				68	0	0	26	12	31.5789
PDK3	0	genome.wustl.edu	37	X	24552101	24552101	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	24552101	24552101	G	A	SNP	PDK3	ENST00000441463	human	ensembl	74_37	+1	known	missense	c.1133	p.R378H	1.000	NULL	pfam_BCDHK/PDK_N,pfam_HATPase_ATP-bd,superfamily_BCDHK/PDK_N,superfamily_HATPase_ATP-bd,smart_HATPase_ATP-bd,pfscan_Sig_transdc_His_kinase_core	-	no_errors	PDK3	HGNC	ENSG00000067992				34	0	0	14	11	44
PCYT1B	0	genome.wustl.edu	37	X	24608151	24608151	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	24608151	24608151	C	T	SNP	PCYT1B	ENST00000379144	human	ensembl	74_37	-1	known	missense	c.475	p.E159K	1.000	pfam_Cyt_trans-like	pfam_Cyt_trans-like,tigrfam_Cyt_trans-like	-	no_errors	PCYT1B	HGNC	ENSG00000102230				18	0	0	14	4	22.2222
PCYT1B	0	genome.wustl.edu	37	X	24690692	24690692	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	24690692	24690692	G	A	SNP	PCYT1B	ENST00000379145	human	ensembl	74_37	-1	known	missense	c.58	p.R20C	0.191	NULL	pfam_Cyt_trans-like,tigrfam_Cyt_trans-like	-	no_errors	PCYT1B	HGNC	ENSG00000102230				40	0	0	48	6	11.1111
DCAF8L2	0	genome.wustl.edu	37	X	27766835	27766835	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	27766835	27766835	C	T	SNP	DCAF8L2	ENST00000451261	human	ensembl	74_37	+1	known	missense	c.1823	p.S608L	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF8L2	HGNC	ENSG00000189186				11	0	0	8	3	27.2727
DCAF8L1	0	genome.wustl.edu	37	X	27997832	27997832	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	27997832	27997832	C	T	SNP	DCAF8L1	ENST00000441525	human	ensembl	74_37	-1	known	silent	c.1620	p.T540	0.005	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF8L1	HGNC	ENSG00000226372				60	0	0	52	7	11.8644
TAB3	0	genome.wustl.edu	37	X	30872570	30872570	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	30872570	30872570	C	T	SNP	TAB3	ENST00000288422	human	ensembl	74_37	-1	known	silent	c.1212	p.T404	0.206	NULL	pfam_CUE,pfam_Znf_RanBP2,superfamily_UBA-like,smart_CUE,smart_Znf_RanBP2,pfscan_CUE,pfscan_Znf_RanBP2	-	no_errors	TAB3	HGNC	ENSG00000157625				90	0	0	91	11	10.7843
TAB3	0	genome.wustl.edu	37	X	30877628	30877628	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	30877628	30877628	G	A	SNP	TAB3	ENST00000288422	human	ensembl	74_37	-1	known	silent	c.78	p.G26	0.974	pfam_CUE,superfamily_UBA-like,smart_CUE,pfscan_CUE	pfam_CUE,pfam_Znf_RanBP2,superfamily_UBA-like,smart_CUE,smart_Znf_RanBP2,pfscan_CUE,pfscan_Znf_RanBP2	-	no_errors	TAB3	HGNC	ENSG00000157625				24	0	0	13	11	45.8333
FAM47C	0	genome.wustl.edu	37	X	37028325	37028325	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	37028325	37028325	C	T	SNP	FAM47C	ENST00000358047	human	ensembl	74_37	+1	known	silent	c.1842	p.R614	0.000	NULL	NULL	-	no_errors	FAM47C	HGNC	ENSG00000198173				53	0	0	30	5	14.2857
FAM47C	0	genome.wustl.edu	37	X	37028757	37028757	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	37028757	37028757	C	T	SNP	FAM47C	ENST00000358047	human	ensembl	74_37	+1	known	silent	c.2274	p.R758	0.001	NULL	NULL	-	no_errors	FAM47C	HGNC	ENSG00000198173				53	0	0	25	25	50
CYBB	0	genome.wustl.edu	37	X	37663265	37663265	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	37663265	37663265	G	A	SNP	CYBB	ENST00000378588	human	ensembl	74_37	+1	known	missense	c.1033	p.A345T	1.000	pfam_FAD-bd_8,pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl	pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl,prints_Cyt_b245_heavy_chain	-	no_errors	CYBB	HGNC	ENSG00000165168				59	0	0	19	25	56.8182
MID1IP1	0	genome.wustl.edu	37	X	38664476	38664476	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	38664476	38664476	C	T	SNP	MID1IP1	ENST00000336949	human	ensembl	74_37	+1	known	missense	c.277	p.L93F	1.000	pfam_Spot_14	pfam_Spot_14	-	no_errors	MID1IP1	HGNC	ENSG00000165175				15	0	0	10	19	65.5172
BCOR	0	genome.wustl.edu	37	X	39932705	39932705	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	39932705	39932705	C	T	SNP	BCOR	ENST00000378444	human	ensembl	74_37	-1	known	missense	c.1894	p.G632S	0.999	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCOR	HGNC	ENSG00000183337				45	0	0	21	15	41.6667
DUSP21	0	genome.wustl.edu	37	X	44703683	44703683	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	44703683	44703683	C	T	SNP	DUSP21	ENST00000339042	human	ensembl	74_37	+1	known	missense	c.305	p.T102M	0.942	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP_famB,prints_Atypical_DUSP	-	no_errors	DUSP21	HGNC	ENSG00000189037				59	0	0	35	6	14.6341
ELK1	0	genome.wustl.edu	37	X	47500653	47500653	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	47500653	47500653	G	A	SNP	ELK1	ENST00000247161	human	ensembl	74_37	-1	known	missense	c.188	p.A63V	1.000	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ELK1	HGNC	ENSG00000126767				37	0	0	22	5	18.5185
ZNF630	0	genome.wustl.edu	37	X	47926265	47926265	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	47926265	47926265	A	G	SNP	ZNF630	ENST00000409324	human	ensembl	74_37	-1	known	missense	c.10	p.S4P	0.000	superfamily_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF630	HGNC	ENSG00000221994				37	0	0	40	5	11.1111
HDAC6	0	genome.wustl.edu	37	X	48661088	48661088	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	48661088	48661088	G	A	SNP	HDAC6	ENST00000444343	human	ensembl	74_37	+1	known	missense	c.31	p.A11T	0.000	NULL	pfam_His_deacetylse_dom,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,prints_His_deacetylse	-	no_errors	HDAC6	HGNC	ENSG00000094631				14	0	0	3	3	50
GRIPAP1	0	genome.wustl.edu	37	X	48832466	48832466	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	48832466	48832466	C	T	SNP	GRIPAP1	ENST00000376441	human	ensembl	74_37	-1	known	missense	c.2242	p.A748T	1.000	NULL	superfamily_Prefoldin	-	no_errors	GRIPAP1	HGNC	ENSG00000068400				34	0	0	12	13	52
CLCN5	0	genome.wustl.edu	37	X	49856842	49856842	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	49856842	49856842	C	T	SNP	CLCN5	ENST00000376088	human	ensembl	74_37	+1	known	missense	c.2417	p.A806V	1.000	NULL	pfam_Cl-channel_volt-gated,pfam_CBS_dom,superfamily_Cl-channel_core,smart_CBS_dom,prints_Cl-channel_volt-gated,prints_Cl_channel-5	-	no_errors	CLCN5	HGNC	ENSG00000171365				45	0	0	34	5	12.8205
SHROOM4	0	genome.wustl.edu	37	X	50339874	50339874	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	50339874	50339874	C	T	SNP	SHROOM4	ENST00000289292	human	ensembl	74_37	-1	known	missense	c.4303	p.V1435M	0.995	pfam_ASD2	pfam_ASD2,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM4	HGNC	ENSG00000158352				17	0	0	17	4	19.0476
BMP15	0	genome.wustl.edu	37	X	50659440	50659440	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	50659440	50659440	G	A	SNP	BMP15	ENST00000252677	human	ensembl	74_37	+1	known	missense	c.1012	p.A338T	0.999	pfam_TGF-b_C,smart_TGF-b_C	pfam_TGF-b_C,smart_TGF-b_C,prints_Inhibin_asu	-	no_errors	BMP15	HGNC	ENSG00000130385				67	0	0	53	6	10.1695
CXorf67	0	genome.wustl.edu	37	X	51150634	51150634	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	51150634	51150634	G	A	SNP	CXorf67	ENST00000342995	human	ensembl	74_37	+1	known	missense	c.766	p.A256T	0.001	NULL	NULL	-	no_errors	CXorf67	HGNC	ENSG00000187690				11	0	0	2	5	71.4286
GSPT2	0	genome.wustl.edu	37	X	51488078	51488078	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	51488078	51488078	C	T	SNP	GSPT2	ENST00000340438	human	ensembl	74_37	+1	known	silent	c.1356	p.S452	0.928	pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_B-barrel	pfam_EF_GTP-bd_dom,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,pfam_Ataxin-2_C,superfamily_P-loop_NTPase,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_B-barrel,prints_EF_GTP-bd_dom	-	no_errors	GSPT2	HGNC	ENSG00000189369				41	0	0	17	16	48.4848
KDM5C	0	genome.wustl.edu	37	X	53247024	53247024	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	53247024	53247024	C	T	SNP	KDM5C	ENST00000375401	human	ensembl	74_37	-1	known	missense	c.476	p.R159H	1.000	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_Znf_PHD-finger,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5C	HGNC	ENSG00000126012				30	0	0	14	12	46.1538
IQSEC2	0	genome.wustl.edu	37	X	53280263	53280263	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	53280263	53280263	G	A	SNP	IQSEC2	ENST00000396435	human	ensembl	74_37	-1	known	missense	c.1495	p.R499W	0.983	NULL	pfam_Sec7_dom,superfamily_Sec7_dom,superfamily_P-loop_NTPase,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7_dom	-	no_errors	IQSEC2	HGNC	ENSG00000124313				52	0	0	24	24	50
HUWE1	0	genome.wustl.edu	37	X	53569478	53569478	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	53569478	53569478	G	A	SNP	HUWE1	ENST00000262854	human	ensembl	74_37	-1	known	missense	c.11402	p.A3801V	0.011	NULL	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/Ts_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758				41	0	0	29	7	19.4444
GNL3L	0	genome.wustl.edu	37	X	54584945	54584945	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	54584945	54584945	G	A	SNP	GNL3L	ENST00000336470	human	ensembl	74_37	+1	known	missense	c.1523	p.R508H	0.000	NULL	pfam_GTP_binding_domain,pfam_Fe2_transport_prot_B_N,superfamily_P-loop_NTPase,prints_GTP_binding_domain	-	no_errors	GNL3L	HGNC	ENSG00000130119				32	0	0	12	14	53.8462
ITIH6	0	genome.wustl.edu	37	X	54781451	54781451	+	Silent	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	54781451	54781451	T	C	SNP	ITIH6	ENST00000218436	human	ensembl	74_37	-1	known	silent	c.3201	p.K1067	0.118	NULL	pfam_VIT,pfam_ITI_HC_C,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH6	HGNC	ENSG00000102313				37	0	0	32	7	17.9487
TRO	0	genome.wustl.edu	37	X	54949812	54949812	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	54949812	54949812	G	A	SNP	TRO	ENST00000173898	human	ensembl	74_37	+1	known	missense	c.847	p.A283T	0.001	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	TRO	HGNC	ENSG00000067445				8	0	0	6	9	60
USP51	0	genome.wustl.edu	37	X	55514472	55514472	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	55514472	55514472	C	T	SNP	USP51	ENST00000500968	human	ensembl	74_37	-1	known	missense	c.901	p.A301T	1.000	NULL	pfam_Peptidase_C19/C67,pfam_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP51	HGNC	ENSG00000247746				59	0	0	24	23	48.9362
AR	0	genome.wustl.edu	37	X	66942787	66942787	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	66942787	66942787	C	T	SNP	AR	ENST00000374690	human	ensembl	74_37	+1	known	silent	c.2568	p.R856	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core	pfam_Andrgn_rcpt,pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Andrgn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	AR	HGNC	ENSG00000169083				40	0	0	16	17	51.5152
PJA1	0	genome.wustl.edu	37	X	68382185	68382185	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	68382185	68382185	G	A	SNP	PJA1	ENST00000361478	human	ensembl	74_37	-1	known	silent	c.897	p.G299	0.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PJA1	HGNC	ENSG00000181191				45	0	0	38	14	26.9231
P2RY4	0	genome.wustl.edu	37	X	69479032	69479032	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	69479032	69479032	C	T	SNP	P2RY4	ENST00000374519	human	ensembl	74_37	-1	known	missense	c.443	p.R148H	0.992	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_P2Y4_rcpt,prints_P2Y2_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_P2Y4_rcpt,prints_GPCR_Rhodpsn,prints_P2Y2_rcpt	-	no_errors	P2RY4	HGNC	ENSG00000186912				12	0	0	17	11	39.2857
KIF4A	0	genome.wustl.edu	37	X	69615826	69615826	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	69615826	69615826	C	T	SNP	KIF4A	ENST00000374403	human	ensembl	74_37	+1	known	missense	c.2416	p.R806C	0.017	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF4A	HGNC	ENSG00000090889				51	0	0	26	18	40.9091
SLC7A3	0	genome.wustl.edu	37	X	70149776	70149776	+	Silent	SNP	A	A	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	70149776	70149776	A	C	SNP	SLC7A3	ENST00000298085	human	ensembl	74_37	-1	known	silent	c.72	p.A24	0.001	tigrfam_Cat_AA_permease	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1,tigrfam_Cat_AA_permease	-	no_errors	SLC7A3	HGNC	ENSG00000165349				26	0	0	16	12	42.8571
TAF1	0	genome.wustl.edu	37	X	70598858	70598858	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	70598858	70598858	C	T	SNP	TAF1	ENST00000449580	human	ensembl	74_37	+1	known	missense	c.1334	p.A445V	1.000	pirsf_TAF1_animal	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1	HGNC	ENSG00000147133				70	0	0	61	7	10.2941
TAF1	0	genome.wustl.edu	37	X	70603863	70603863	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	70603863	70603863	C	T	SNP	TAF1	ENST00000449580	human	ensembl	74_37	+1	known	missense	c.1996	p.R666C	1.000	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1	HGNC	ENSG00000147133				95	0	0	64	14	17.9487
OGT	0	genome.wustl.edu	37	X	70779183	70779183	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	70779183	70779183	C	T	SNP	OGT	ENST00000373719	human	ensembl	74_37	+1	known	missense	c.1669	p.R557C	1.000	NULL	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	OGT	HGNC	ENSG00000147162				39	0	0	29	23	44.2308
ERCC6L	0	genome.wustl.edu	37	X	71425358	71425358	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	71425358	71425358	T	C	SNP	ERCC6L	ENST00000334463	human	ensembl	74_37	-1	known	missense	c.3259	p.M1087V	0.000	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_TPR-contain_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6L	HGNC	ENSG00000186871				63	0	0	27	45	62.5
CDX4	0	genome.wustl.edu	37	X	72667389	72667389	+	Silent	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	72667389	72667389	C	T	SNP	CDX4	ENST00000373514	human	ensembl	74_37	+1	known	silent	c.300	p.D100	1.000	pfam_Caudal_activation_dom	pfam_Caudal_activation_dom,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	CDX4	HGNC	ENSG00000131264				19	0	0	5	6	54.5455
XIST	0	genome.wustl.edu	37	X	73062792	73062792	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	73062792	73062792	C	T	SNP	XIST	ENST00000429829	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	XIST	HGNC	ENSG00000229807				43	0	0	21	15	41.6667
XIST	0	genome.wustl.edu	37	X	73066391	73066391	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	73066391	73066391	C	T	SNP	XIST	ENST00000429829	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	XIST	HGNC	ENSG00000229807				87	0	0	40	40	50
XIST	0	genome.wustl.edu	37	X	73068198	73068198	+	RNA	SNP	A	A	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	73068198	73068198	A	G	SNP	XIST	ENST00000429829	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	XIST	HGNC	ENSG00000229807				26	0	0	14	6	30
XIST	0	genome.wustl.edu	37	X	73068975	73068975	+	RNA	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	73068975	73068975	C	T	SNP	XIST	ENST00000429829	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	XIST	HGNC	ENSG00000229807				43	0	0	20	17	45.9459
ATP7A	0	genome.wustl.edu	37	X	77243895	77243895	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	77243895	77243895	C	T	SNP	ATP7A	ENST00000341514	human	ensembl	74_37	+1	known	missense	c.278	p.T93M	0.045	superfamily_HeavyMe-assoc_HMA	pfam_HeavyMe-assoc_HMA,pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,prints_Cation_transp_P_typ_ATPase,prints_HG_scavenger,tigrfam_Cation_transp_P-typ_ATPase_IB,tigrfam_Cation_transp_P_typ_ATPase,tigrfam_HMA_Cu_ion-bd	-	no_errors	ATP7A	HGNC	ENSG00000165240				229	0	0	209	17	7.52212
HDX	0	genome.wustl.edu	37	X	83724399	83724399	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	83724399	83724399	T	C	SNP	HDX	ENST00000297977	human	ensembl	74_37	-1	known	missense	c.332	p.Y111C	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	HDX	HGNC	ENSG00000165259				64	0	0	36	29	44.6154
ZNF711	0	genome.wustl.edu	37	X	84523321	84523321	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	84523321	84523321	G	A	SNP	ZNF711	ENST00000276123	human	ensembl	74_37	+1	known	missense	c.938	p.R313Q	0.802	NULL	pfam_Transcrp_activ_Zfx/Zfy-dom,pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF711	HGNC	ENSG00000147180				26	0	0	13	14	51.8519
CHM	0	genome.wustl.edu	37	X	85149202	85149202	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	85149202	85149202	T	C	SNP	CHM	ENST00000357749	human	ensembl	74_37	-1	known	missense	c.1501	p.K501E	1.000	pfam_GDP_dissociation_inhibitor,pirsf_Rab_geranylTrfase_A_euk	pfam_GDP_dissociation_inhibitor,pirsf_Rab_geranylTrfase_A_euk,prints_Rab_escort,prints_GDP_dissociation_inhibitor	-	no_errors	CHM	HGNC	ENSG00000188419				64	0	0	53	3	5.35714
NAP1L3	0	genome.wustl.edu	37	X	92927519	92927519	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	92927519	92927519	T	C	SNP	NAP1L3	ENST00000373079	human	ensembl	74_37	-1	known	missense	c.785	p.D262G	0.007	pfam_NAP_family	pfam_NAP_family	-	no_errors	NAP1L3	HGNC	ENSG00000186310				83	0	0	33	33	50
TBL1X	0	genome.wustl.edu	37	X	9656277	9656277	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	9656277	9656277	C	T	SNP	TBL1X	ENST00000217964	human	ensembl	74_37	+1	known	missense	c.578	p.A193V	1.000	NULL	pfam_WD40_repeat,pfam_LisH_dimerisation_subgr,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_WD40_repeat,pfscan_LisH_dimerisation,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	TBL1X	HGNC	ENSG00000101849				13	0	0	4	4	50
SYTL4	0	genome.wustl.edu	37	X	99942125	99942125	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	99942125	99942125	C	T	SNP	SYTL4	ENST00000454200	human	ensembl	74_37	-1	known	missense	c.1129	p.V377I	0.124	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin	pfam_C2_dom,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,smart_C2_dom,pfscan_C2_dom,pfscan_Znf_FYVE-typ,prints_Synaptotagmin	-	no_errors	SYTL4	HGNC	ENSG00000102362				47	0	0	35	24	40.678
NLGN4Y	0	genome.wustl.edu	37	Y	16952743	16952743	+	Silent	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	Y	16952743	16952743	G	A	SNP	NLGN4Y	ENST00000382868	human	ensembl	74_37	+1	known	silent	c.2223	p.S741	0.989	prints_Neuroligin	pfam_CarbesteraseB,prints_Neuroligin	-	no_errors	NLGN4Y	HGNC	ENSG00000165246				63	0	0	16	10	38.4615
ZFY	0	genome.wustl.edu	37	Y	2847736	2847736	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	Y	2847736	2847736	G	A	SNP	ZFY	ENST00000155093	human	ensembl	74_37	+1	known	missense	c.2108	p.R703H	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Transcrp_activ_Zfx/Zfy-dom,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFY	HGNC	ENSG00000067646				110	0	0	40	30	42.8571
TGIF2LY	0	genome.wustl.edu	37	Y	3447296	3447296	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	Y	3447296	3447296	C	T	SNP	TGIF2LY	ENST00000321217	human	ensembl	74_37	+1	known	missense	c.11	p.A4V	0.006	NULL	pfam_Homeobox_dom,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	TGIF2LY	HGNC	ENSG00000176679				25	0	0	6	6	50
HIAT1	0	genome.wustl.edu	37	1	100534034	100534034	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	100534034	100534034	A	-	DEL	HIAT1	ENST00000370152	human	ensembl	74_37	+1	known	frame_shift_del	c.711	p.V240fs	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Tet-R_TetA/multi-R_MdtG	-	no_errors	HIAT1	HGNC	ENSG00000156875				111	0	0	86	21	19.6262
CAPZA1	0	genome.wustl.edu	37	1	113192225	113192225	+	RNA	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	113192225	113192225	T	-	DEL	CAPZA1	ENST00000485542	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.050	-	-	-	no_errors	CAPZA1	HGNC	ENSG00000116489				13	0	0	13	3	18.75
ADAM30	0	genome.wustl.edu	37	1	120436591	120436591	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	120436591	120436591	T	-	DEL	ADAM30	ENST00000369400	human	ensembl	74_37	-1	known	frame_shift_del	c.2369	p.K790fs	0.000	NULL	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM30	HGNC	ENSG00000134249				236	1	0.421941	163	41	20.098
PRDM2	0	genome.wustl.edu	37	1	14108560	14108560	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	14108560	14108560	A	-	DEL	PRDM2	ENST00000235372	human	ensembl	74_37	+1	known	frame_shift_del	c.4270	p.N1426fs	1.000	pirsf_RIZ_retinblastoma-bd_prot	pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pirsf_RIZ_retinblastoma-bd_prot,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM2	HGNC	ENSG00000116731				165	0	0	110	34	23.6111
PRDM2	0	genome.wustl.edu	37	1	14108749	14108749	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	14108749	14108749	A	-	DEL	PRDM2	ENST00000235372	human	ensembl	74_37	+1	known	frame_shift_del	c.4459	p.V1490fs	1.000	pirsf_RIZ_retinblastoma-bd_prot	pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pirsf_RIZ_retinblastoma-bd_prot,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM2	HGNC	ENSG00000116731				370	1	0.269542	266	59	18.1538
LIX1L	0	genome.wustl.edu	37	1	145498618	145498619	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	145498618	145498619	AG	-	DEL	LIX1L	ENST00000369308	human	ensembl	74_37	+1	known	frame_shift_del	c.854_855	p.S286fs	1.000:1.000	NULL	NULL	-	no_errors	LIX1L	HGNC	ENSG00000152022				30	0	0	35	6	14.6341
FMO5	0	genome.wustl.edu	37	1	146680465	146680465	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	146680465	146680465	T	-	DEL	FMO5	ENST00000254090	human	ensembl	74_37	-1	known	frame_shift_del	c.779	p.K260fs	0.000	pfam_Flavin_mOase-like,pirsf_DiMe-aniline_mOase	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase,prints_Flavin_mOase_5,prints_Flavin_mOase_2,prints_Flavin_mOase_1	-	no_errors	FMO5	HGNC	ENSG00000131781				69	0	0	69	12	14.8148
VPS45	0	genome.wustl.edu	37	1	150082564	150082564	+	RNA	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	150082564	150082564	T	-	DEL	VPS45	ENST00000484306	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	VPS45	HGNC	ENSG00000136631				40	0	0	26	5	16.129
RPRD2	0	genome.wustl.edu	37	1	150445908	150445908	+	RNA	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	150445908	150445908	T	-	DEL	RPRD2	ENST00000492220	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.276	-	-	-	no_errors	RPRD2	HGNC	ENSG00000163125				33	0	0	17	4	19.0476
ADAMTSL4	0	genome.wustl.edu	37	1	150529443	150529443	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	150529443	150529443	T	-	DEL	ADAMTSL4	ENST00000369039	human	ensembl	74_37	+1	known	frame_shift_del	c.1847	p.Y618fs	0.666	pfam_ADAM_spacer1	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt	-	no_errors	ADAMTSL4	HGNC	ENSG00000143382				404	0	0	298	54	15.3409
POGZ	0	genome.wustl.edu	37	1	151378465	151378465	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	151378465	151378465	C	-	DEL	POGZ	ENST00000271715	human	ensembl	74_37	-1	known	frame_shift_del	c.3046	p.E1016fs	1.000	NULL	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_Znf_C2H2	-	no_errors	POGZ	HGNC	ENSG00000143442				90	0	0	80	6	6.97674
LINGO4	0	genome.wustl.edu	37	1	151774033	151774033	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	151774033	151774033	G	-	DEL	LINGO4	ENST00000368820	human	ensembl	74_37	-1	known	frame_shift_del	c.1148	p.P383fs	1.000	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LINGO4	HGNC	ENSG00000213171				33	0	0	36	9	20
RAB13	0	genome.wustl.edu	37	1	153955602	153955603	+	RNA	DEL	AA	AA	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	153955602	153955603	AA	-	DEL	RAB13	ENST00000462680	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.029:0.027	-	-	-	no_errors	RAB13	HGNC	ENSG00000143545				77	0	0	43	14	24.5614
KIAA0907	0	genome.wustl.edu	37	1	155886695	155886695	+	RNA	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	155886695	155886695	T	-	DEL	KIAA0907	ENST00000465953	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	KIAA0907	HGNC	ENSG00000132680				9	0	0	5	3	37.5
BCAN	0	genome.wustl.edu	37	1	156626160	156626160	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	156626160	156626160	G	-	DEL	BCAN	ENST00000329117	human	ensembl	74_37	+1	known	frame_shift_del	c.2029	p.D679fs	1.000	pfam_EG-like_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_Sushi_SCR_CCP,pfam_EG-like_dom,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,smart_EG-like_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,prints_Link,prints_AntifreezeII,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom	-	no_errors	BCAN	HGNC	ENSG00000132692				69	0	0	65	6	8.4507
ENSG00000228863	0	genome.wustl.edu	37	1	160640798	160640798	+	RNA	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	160640798	160640798	T	-	DEL	ENSG00000228863	ENST00000598917	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.983	-	-	-	no_errors	RP11-404F10.2	Clone_based_vega_gene	ENSG00000228863				30	0	0	19	6	24
ARHGAP30	0	genome.wustl.edu	37	1	161017601	161017601	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	161017601	161017601	G	-	DEL	ARHGAP30	ENST00000368013	human	ensembl	74_37	-1	known	frame_shift_del	c.3210	p.R1071fs	0.882	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP30	HGNC	ENSG00000186517				107	0	0	76	8	9.52381
NPHS2	0	genome.wustl.edu	37	1	179528881	179528881	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	179528881	179528881	A	-	DEL	NPHS2	ENST00000367615	human	ensembl	74_37	-1	known	frame_shift_del	c.467	p.L156fs	1.000	pfam_Band_7,smart_Band_7	pfam_Band_7,smart_Band_7,prints_Stomatin	-	no_errors	NPHS2	HGNC	ENSG00000116218				20	0	0	17	3	15
DDX59	0	genome.wustl.edu	37	1	200594042	200594042	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	200594042	200594042	T	-	DEL	DDX59	ENST00000447706	human	ensembl	74_37	-1	known	frame_shift_del	c.1730	p.N577fs	0.001	pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Znf_HIT,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX59	HGNC	ENSG00000118197				76	0	0	47	24	33.8028
DDX59	0	genome.wustl.edu	37	1	200635844	200635844	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	200635844	200635844	T	-	DEL	DDX59	ENST00000331314	human	ensembl	74_37	-1	known	frame_shift_del	c.25	p.I9fs	0.996	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Znf_HIT,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX59	HGNC	ENSG00000118197				119	0	0	123	25	16.8919
CAMSAP2	0	genome.wustl.edu	37	1	200822549	200822549	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	200822549	200822549	A	-	DEL	CAMSAP2	ENST00000236925	human	ensembl	74_37	+1	known	frame_shift_del	c.3782	p.K1263fs	0.945	NULL	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrel-like,superfamily_CH-domain	-	no_errors	CAMSAP2	HGNC	ENSG00000118200				139	1	0.714286	119	23	16.1972
CAMSAP2	0	genome.wustl.edu	37	1	200827020	200827020	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	200827020	200827020	A	-	DEL	CAMSAP2	ENST00000236925	human	ensembl	74_37	+1	known	frame_shift_del	c.4303	p.M1437fs	1.000	pfam_CKK_domain,superfamily_PRC_barrel-like	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrel-like,superfamily_CH-domain	-	no_errors	CAMSAP2	HGNC	ENSG00000118200				113	0	0	83	20	19.4175
PPP1R12B	0	genome.wustl.edu	37	1	202407190	202407190	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	202407190	202407190	T	-	DEL	PPP1R12B	ENST00000480184	human	ensembl	74_37	+1	novel	frame_shift_del	c.1496	p.F502fs	0.041	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	PPP1R12B	HGNC	ENSG00000077157				49	0	0	35	13	27.0833
ENSG00000226862	0	genome.wustl.edu	37	1	202573400	202573400	+	RNA	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	202573400	202573400	C	-	DEL	ENSG00000226862	ENST00000428573	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-569A11.1	Clone_based_vega_gene	ENSG00000226862				13	0	0	15	2	11.7647
CD46	0	genome.wustl.edu	37	1	207933081	207933082	+	RNA	INS	-	-	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	207933081	207933082	-	T	INS	CD46	ENST00000469535	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.008:0.015	-	-	-	no_errors	CD46	HGNC	ENSG00000117335				22	0	0	24	6	20
CD34	0	genome.wustl.edu	37	1	208063101	208063102	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	208063101	208063102	AA	-	DEL	CD34	ENST00000367036	human	ensembl	74_37	-1	known	frame_shift_del	c.82_81	p.S28fs	0.000:0.000	NULL	pfam_CD34/Podocalyxin,prints_CD34	-	no_errors	CD34	HGNC	ENSG00000174059				26	0	0	30	12	28.5714
KCNH1	0	genome.wustl.edu	37	1	211192536	211192537	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	211192536	211192537	-	G	INS	KCNH1	ENST00000271751	human	ensembl	74_37	-1	known	frame_shift_ins	c.621_620	p.H208fs	0.837:1.000	NULL	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH1	HGNC	ENSG00000143473				134	0	0	83	15	15.3061
DTL	0	genome.wustl.edu	37	1	212253893	212253893	+	RNA	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	212253893	212253893	T	-	DEL	DTL	ENST00000463791	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DTL	HGNC	ENSG00000143476				199	0	0	156	50	24.2718
BATF3	0	genome.wustl.edu	37	1	212870414	212870414	+	RNA	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	212870414	212870414	A	-	DEL	BATF3	ENST00000478275	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.148	-	-	-	no_errors	BATF3	HGNC	ENSG00000123685				61	0	0	35	5	12.5
ANGEL2	0	genome.wustl.edu	37	1	213180442	213180445	+	RNA	DEL	AAAA	AAAA	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	AAAA	AAAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	213180442	213180445	AAAA	-	DEL	ANGEL2	ENST00000460337	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.007:0.006:0.011:0.009	-	-	-	no_errors	ANGEL2	HGNC	ENSG00000174606				73	0	0	50	15	23.0769
PROX1	0	genome.wustl.edu	37	1	214178556	214178556	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	214178556	214178556	T	-	DEL	PROX1	ENST00000261454	human	ensembl	74_37	+1	known	frame_shift_del	c.1774	p.Y594fs	1.000	pfam_Homeo_prospero_dom,superfamily_Homeodomain-like	pfam_Homeo_prospero_dom,superfamily_Homeodomain-like	-	no_errors	PROX1	HGNC	ENSG00000117707				90	0	0	85	9	9.57447
LYPLAL1	0	genome.wustl.edu	37	1	219385123	219385123	+	RNA	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	219385123	219385123	T	-	DEL	LYPLAL1	ENST00000460522	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LYPLAL1	HGNC	ENSG00000143353				43	0	0	24	5	17.2414
USP48	0	genome.wustl.edu	37	1	22033386	22033387	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	22033386	22033387	AA	-	DEL	USP48	ENST00000529637	human	ensembl	74_37	-1	novel	frame_shift_del	c.1975_1974	p.S659fs	0.000:0.000	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67,pfscan_Ubiquitin_supergroup	-	no_errors	USP48	HGNC	ENSG00000090686				39	0	0	37	14	27.451
AGT	0	genome.wustl.edu	37	1	230839055	230839055	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	230839055	230839055	A	-	DEL	AGT	ENST00000366667	human	ensembl	74_37	-1	known	frame_shift_del	c.1290	p.F430fs	0.354	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom,prints_Angiotensinogen	-	no_errors	AGT	HGNC	ENSG00000135744				101	1	0.980392	68	14	17.0732
ARV1	0	genome.wustl.edu	37	1	231131567	231131568	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	231131567	231131568	AA	-	DEL	ARV1	ENST00000310256	human	ensembl	74_37	+1	known	frame_shift_del	c.510_511	p.K173fs	0.000:0.000	pfam_Arv1	pfam_Arv1	-	no_errors	ARV1	HGNC	ENSG00000173409				68	0	0	66	19	22.3529
RYR2	0	genome.wustl.edu	37	1	237969494	237969494	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	237969494	237969494	T	-	DEL	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	frame_shift_del	c.14227	p.F4745fs	1.000	pfam_Ion_trans_dom	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626				61	0	0	43	11	20.3704
TCEB3	0	genome.wustl.edu	37	1	24078404	24078404	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	24078404	24078404	A	-	DEL	TCEB3	ENST00000418390	human	ensembl	74_37	+1	known	frame_shift_del	c.1387	p.N465fs	0.998	NULL	pfam_RNA_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,pfscan_F-box_dom	-	no_errors	TCEB3	HGNC	ENSG00000011007				281	0	0	158	91	36.5462
EXO1	0	genome.wustl.edu	37	1	242042052	242042052	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	242042052	242042052	T	-	DEL	EXO1	ENST00000348581	human	ensembl	74_37	+1	known	frame_shift_del	c.1516	p.C508fs	1.000	NULL	pfam_XPG-I_dom,pfam_XPG_DNA_repair_N,superfamily_5-3_exonuclease_C,smart_XPG_DNA_repair_N,smart_XPG-I_dom,smart_HhH2,prints_XPG/Rad2	-	no_errors	EXO1	HGNC	ENSG00000174371				34	0	0	28	4	12.5
PGBD2	0	genome.wustl.edu	37	1	249211828	249211828	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	249211828	249211828	T	-	DEL	PGBD2	ENST00000329291	human	ensembl	74_37	+1	known	frame_shift_del	c.1045	p.F350fs	0.994	NULL	NULL	-	no_errors	PGBD2	HGNC	ENSG00000185220				157	0	0	134	23	14.6497
PGBD2	0	genome.wustl.edu	37	1	249211954	249211954	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	249211954	249211954	A	-	DEL	PGBD2	ENST00000329291	human	ensembl	74_37	+1	known	frame_shift_del	c.1171	p.M393fs	0.935	NULL	NULL	-	no_errors	PGBD2	HGNC	ENSG00000185220				90	0	0	79	23	22.549
TMEM222	0	genome.wustl.edu	37	1	27657215	27657215	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	27657215	27657215	T	-	DEL	TMEM222	ENST00000374076	human	ensembl	74_37	+1	known	frame_shift_del	c.199	p.F68fs	1.000	pfam_DUF778	pfam_DUF778	-	no_errors	TMEM222	HGNC	ENSG00000186501				200	0	0	131	28	17.6101
PTP4A2	0	genome.wustl.edu	37	1	32384717	32384717	+	RNA	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	32384717	32384717	A	-	DEL	PTP4A2	ENST00000532289	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PTP4A2	HGNC	ENSG00000184007				21	0	0	16	4	20
ZMYM1	0	genome.wustl.edu	37	1	35563188	35563188	+	RNA	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	35563188	35563188	C	-	DEL	ZMYM1	ENST00000466390	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZMYM1	HGNC	ENSG00000197056				89	0	0	68	9	11.6883
ZMYM4	0	genome.wustl.edu	37	1	35846960	35846961	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	35846960	35846961	AA	-	DEL	ZMYM4	ENST00000314607	human	ensembl	74_37	+1	known	frame_shift_del	c.1282_1283	p.K430fs	1.000:1.000	NULL	pfam_DUF3504,pfam_Znf_MYM,smart_TRASH_dom	-	no_errors	ZMYM4	HGNC	ENSG00000146463				99	0	0	54	18	25
THRAP3	0	genome.wustl.edu	37	1	36752635	36752635	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	36752635	36752635	C	-	DEL	THRAP3	ENST00000354618	human	ensembl	74_37	+1	known	frame_shift_del	c.804	p.V270fs	1.000	NULL	NULL	-	no_errors	THRAP3	HGNC	ENSG00000054118				103	0	0	59	14	19.1781
MACF1	0	genome.wustl.edu	37	1	39924237	39924237	+	RNA	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	39924237	39924237	A	-	DEL	MACF1	ENST00000497964	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	MACF1	HGNC	ENSG00000127603				25	0	0	25	6	19.3548
PABPC4	0	genome.wustl.edu	37	1	40027379	40027381	+	In_Frame_Del	DEL	AGC	AGC	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	AGC	AGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	40027379	40027381	AGC	-	DEL	PABPC4	ENST00000372858	human	ensembl	74_37	-1	known	in_frame_del	c.1974_1972	p.A658in_frame_del	1.000:1.000:1.000	superfamily_PABP_HYD	pfam_RRM_dom,pfam_PABP_HYD,superfamily_PABP_HYD,smart_RRM_dom,smart_RRM_dom_euk,smart_PABP_HYD,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC4	HGNC	ENSG00000090621				84	0	0	57	10	14.9254
ENSG00000228060	0	genome.wustl.edu	37	1	40038264	40038265	+	RNA	DEL	AG	AG	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	40038264	40038265	AG	-	DEL	ENSG00000228060	ENST00000415255	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.001	-	-	-	no_errors	RP11-69E11.8	Clone_based_vega_gene	ENSG00000228060				89	0	0	56	7	11.1111
RLF	0	genome.wustl.edu	37	1	40705591	40705591	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	40705591	40705591	A	-	DEL	RLF	ENST00000372771	human	ensembl	74_37	+1	known	frame_shift_del	c.5217	p.N1741fs	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RLF	HGNC	ENSG00000117000				127	0	0	90	20	18.1818
TAL1	0	genome.wustl.edu	37	1	47689698	47689698	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	47689698	47689698	G	-	DEL	TAL1	ENST00000371883	human	ensembl	74_37	-1	known	frame_shift_del	c.525	p.Y176fs	0.999	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	TAL1	HGNC	ENSG00000162367				180	0	0	140	28	16.6667
BTF3L4	0	genome.wustl.edu	37	1	52530571	52530571	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	52530571	52530571	A	-	DEL	BTF3L4	ENST00000313334	human	ensembl	74_37	+1	known	frame_shift_del	c.129	p.K45fs	0.252	pfam_Nas_poly-pep-assoc_cplx_dom,pfscan_Nas_poly-pep-assoc_cplx_dom	pfam_Nas_poly-pep-assoc_cplx_dom,pfscan_Nas_poly-pep-assoc_cplx_dom	-	no_errors	BTF3L4	HGNC	ENSG00000134717				83	0	0	66	11	14.2857
RPL22	0	genome.wustl.edu	37	1	6257785	6257785	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	6257785	6257785	T	-	DEL	RPL22	ENST00000234875	human	ensembl	74_37	-1	known	frame_shift_del	c.44	p.K15fs	1.000	pfam_Ribosomal_L22e	pfam_Ribosomal_L22e	-	no_errors	RPL22	HGNC	ENSG00000116251				62	0	0	14	10	41.6667
DOCK7	0	genome.wustl.edu	37	1	62941104	62941104	+	RNA	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	62941104	62941104	A	-	DEL	DOCK7	ENST00000467758	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.057	-	-	-	no_errors	DOCK7	HGNC	ENSG00000116641				21	0	0	17	3	15
JAK1	0	genome.wustl.edu	37	1	65306997	65306997	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	65306997	65306997	T	-	DEL	JAK1	ENST00000342505	human	ensembl	74_37	-1	known	frame_shift_del	c.2580	p.K860fs	0.055	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,superfamily_Kinase-like_dom	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak1,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_SH2,pfscan_Prot_kinase_dom	-	no_errors	JAK1	HGNC	ENSG00000162434				129	0	0	93	14	13.0841
NOL9	0	genome.wustl.edu	37	1	6593377	6593378	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	6593377	6593378	CT	-	DEL	NOL9	ENST00000377705	human	ensembl	74_37	-1	known	frame_shift_del	c.1200_1199	p.E400fs	0.827:1.000	superfamily_P-loop_NTPase	pfam_Pre-mRNA_cleavage_cplxII_Clp1,superfamily_P-loop_NTPase	-	no_errors	NOL9	HGNC	ENSG00000162408				143	0	0	95	21	18.1034
PHF13	0	genome.wustl.edu	37	1	6680127	6680128	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	6680127	6680128	-	G	INS	PHF13	ENST00000377648	human	ensembl	74_37	+1	known	frame_shift_ins	c.406_407	p.L140fs	0.917:0.944	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD	-	no_errors	PHF13	HGNC	ENSG00000116273				38	0	0	44	5	10.2041
GNG12	0	genome.wustl.edu	37	1	68171151	68171151	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	68171151	68171151	T	-	DEL	GNG12	ENST00000370982	human	ensembl	74_37	-1	known	frame_shift_del	c.202	p.T68fs	1.000	smart_G-protein_gamma-like_dom,pfscan_G-protein_gamma-like_dom	pfam_G-protein_gamma-like_dom,superfamily_G-protein_gamma-like_dom,smart_G-protein_gamma-like_dom,pfscan_G-protein_gamma-like_dom,prints_Gprotein-gamma	-	no_errors	GNG12	HGNC	ENSG00000172380				134	0	0	115	19	14.1791
LRRIQ3	0	genome.wustl.edu	37	1	74549889	74549889	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	74549889	74549889	T	-	DEL	LRRIQ3	ENST00000415760	human	ensembl	74_37	-1	known	frame_shift_del	c.879	p.K293fs	0.995	NULL	pfam_Leu-rich_rpt,pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ3	HGNC	ENSG00000162620				9	0	0	6	3	33.3333
ZZZ3	0	genome.wustl.edu	37	1	78046646	78046646	+	RNA	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	78046646	78046646	T	-	DEL	ZZZ3	ENST00000476275	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZZZ3	HGNC	ENSG00000036549				68	0	0	35	11	23.913
SPATA1	0	genome.wustl.edu	37	1	84991901	84991901	+	RNA	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	84991901	84991901	A	-	DEL	SPATA1	ENST00000370638	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SPATA1	HGNC	ENSG00000122432				15	0	0	3	2	40
LPAR3	0	genome.wustl.edu	37	1	85331763	85331764	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	85331763	85331764	-	A	INS	LPAR3	ENST00000370611	human	ensembl	74_37	-1	known	frame_shift_ins	c.41_40	p.Y14fs	1.000:1.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_LPA_rcpt_EDG7,prints_GPCR_Rhodpsn,prints_LPA_rcpt,prints_LPA_rcpt_EDG2,prints_Melcrt_ACTH_rcpt	-	no_errors	LPAR3	HGNC	ENSG00000171517				225	0	0	163	35	17.6768
ENSG00000237568	0	genome.wustl.edu	37	1	89735377	89735377	+	RNA	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	89735377	89735377	A	-	DEL	ENSG00000237568	ENST00000437128	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.008	-	-	-	no_errors	RP4-620F22.2	Clone_based_vega_gene	ENSG00000237568				15	0	0	7	3	30
MTF2	0	genome.wustl.edu	37	1	93599773	93599773	+	RNA	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	1	93599773	93599773	T	-	DEL	MTF2	ENST00000487263	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MTF2	HGNC	ENSG00000143033				42	0	0	20	9	31.0345
PYROXD2	0	genome.wustl.edu	37	10	100152769	100152769	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	100152769	100152769	C	-	DEL	PYROXD2	ENST00000370575	human	ensembl	74_37	-1	known	frame_shift_del	c.857	p.G286fs	1.000	NULL	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Amino_oxidase	-	no_errors	PYROXD2	HGNC	ENSG00000119943				45	0	0	51	11	17.7419
ADD3	0	genome.wustl.edu	37	10	111879342	111879342	+	RNA	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	111879342	111879342	T	-	DEL	ADD3	ENST00000488104	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ADD3	HGNC	ENSG00000148700				69	0	0	70	12	14.6341
ADD3	0	genome.wustl.edu	37	10	111893350	111893350	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	111893350	111893350	A	-	DEL	ADD3	ENST00000356080	human	ensembl	74_37	+1	known	frame_shift_del	c.2095	p.K701fs	1.000	NULL	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	-	no_errors	ADD3	HGNC	ENSG00000148700				177	0	0	163	9	5.23256
ENO4	0	genome.wustl.edu	37	10	118618628	118618628	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	118618628	118618628	A	-	DEL	ENO4	ENST00000341276	human	ensembl	74_37	+1	known	frame_shift_del	c.616	p.K208fs	0.942	NULL	pfam_Enolase_C,pfam_Enolase_N	-	no_errors	ENO4	HGNC	ENSG00000188316				10	0	0	3	3	50
KIAA1598	0	genome.wustl.edu	37	10	118719757	118719757	+	RNA	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	118719757	118719757	A	-	DEL	KIAA1598	ENST00000490615	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	KIAA1598	HGNC	ENSG00000187164				56	0	0	20	5	20
C10orf120	0	genome.wustl.edu	37	10	124457495	124457495	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	124457495	124457495	T	-	DEL	C10orf120	ENST00000329446	human	ensembl	74_37	-1	known	frame_shift_del	c.762	p.K254fs	0.000	NULL	NULL	-	no_errors	C10orf120	HGNC	ENSG00000183559				151	0	0	104	23	18.1102
FANK1	0	genome.wustl.edu	37	10	127697969	127697969	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	127697969	127697969	A	-	DEL	FANK1	ENST00000368693	human	ensembl	74_37	+1	known	frame_shift_del	c.1000	p.K336fs	0.022	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Fibronectin_type3,prints_Ankyrin_rpt	-	no_errors	FANK1	HGNC	ENSG00000203780				95	0	0	69	19	21.5909
CCDC3	0	genome.wustl.edu	37	10	12940430	12940431	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	12940430	12940431	-	G	INS	CCDC3	ENST00000378825	human	ensembl	74_37	-1	known	frame_shift_ins	c.799_798	p.Y266fs	0.987:0.964	NULL	NULL	-	no_errors	CCDC3	HGNC	ENSG00000151468				17	0	0	12	4	25
MTG1	0	genome.wustl.edu	37	10	135211971	135211971	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	135211971	135211971	A	-	DEL	MTG1	ENST00000317502	human	ensembl	74_37	+1	known	frame_shift_del	c.315	p.N107fs	0.220	superfamily_P-loop_NTPase,pirsf_GTPase_MTG1,tigrfam_GTP-bd_ribosome_bgen_YlqF	pfam_GTP_binding_domain,superfamily_P-loop_NTPase,pirsf_GTPase_MTG1,tigrfam_GTP-bd_ribosome_bgen_YlqF	-	no_errors	MTG1	HGNC	ENSG00000148824				149	0	0	112	12	9.67742
C10orf71	0	genome.wustl.edu	37	10	50530938	50530938	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	50530938	50530938	C	-	DEL	C10orf71	ENST00000374144	human	ensembl	74_37	+1	known	frame_shift_del	c.348	p.P118fs	0.998	NULL	NULL	-	no_errors	C10orf71	HGNC	ENSG00000177354				113	0	0	94	5	5.05051
DKK1	0	genome.wustl.edu	37	10	54074839	54074839	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	54074839	54074839	A	-	DEL	DKK1	ENST00000373970	human	ensembl	74_37	+1	known	frame_shift_del	c.400	p.N135fs	1.000	pfam_Dickkopf_N	pfam_Dickkopf_N	-	no_errors	DKK1	HGNC	ENSG00000107984				56	0	0	24	4	14.2857
JMJD1C	0	genome.wustl.edu	37	10	64974250	64974250	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	64974250	64974250	T	-	DEL	JMJD1C	ENST00000399262	human	ensembl	74_37	-1	known	frame_shift_del	c.1677	p.D560fs	0.998	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	JMJD1C	HGNC	ENSG00000171988				90	0	0	78	7	8.23529
MYPN	0	genome.wustl.edu	37	10	69935180	69935180	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	69935180	69935180	A	-	DEL	MYPN	ENST00000358913	human	ensembl	74_37	+1	known	frame_shift_del	c.2665	p.I891fs	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MYPN	HGNC	ENSG00000138347				135	0	0	84	16	16
RUFY2	0	genome.wustl.edu	37	10	70156582	70156583	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	70156582	70156583	-	T	INS	RUFY2	ENST00000388768	human	ensembl	74_37	-1	known	frame_shift_ins	c.458_457	p.M153fs	1.000:0.996	pfam_Run,smart_Run,pfscan_Run	pfam_Run,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Run,smart_Znf_FYVE,pfscan_Run,pfscan_Znf_FYVE-rel	-	no_errors	RUFY2	HGNC	ENSG00000204130				67	0	0	73	14	16.092
DNA2	0	genome.wustl.edu	37	10	70182521	70182521	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	70182521	70182521	A	-	DEL	DNA2	ENST00000399180	human	ensembl	74_37	-1	known	frame_shift_del	c.2593	p.S865fs	1.000	superfamily_P-loop_NTPase	pfam_DNA_replication_fac_Dna2_N,superfamily_P-loop_NTPase	-	no_errors	DNA2	HGNC	ENSG00000138346				38	0	0	38	7	15.5556
GLUD1P3	0	genome.wustl.edu	37	10	75491118	75491118	+	RNA	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	75491118	75491118	T	-	DEL	GLUD1P3	ENST00000507952	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.993	-	-	-	no_errors	GLUD1P3	HGNC	ENSG00000250959				21	0	0	16	2	11.1111
ZSWIM8	0	genome.wustl.edu	37	10	75560546	75560547	+	RNA	DEL	CC	CC	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	CC	CC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	75560546	75560547	CC	-	DEL	ZSWIM8	ENST00000603195	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.749:0.797	-	-	-	no_errors	ZSWIM8	HGNC	ENSG00000214655				16	0	0	11	2	15.3846
ENSG00000232342	0	genome.wustl.edu	37	10	76287741	76287741	+	RNA	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	76287741	76287741	A	-	DEL	ENSG00000232342	ENST00000448214	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-46O21.2	Clone_based_vega_gene	ENSG00000232342				29	0	0	19	9	32.1429
FRA10AC1	0	genome.wustl.edu	37	10	95459788	95459788	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	10	95459788	95459788	T	-	DEL	FRA10AC1	ENST00000359204	human	ensembl	74_37	-1	known	frame_shift_del	c.76	p.R26fs	1.000	NULL	pfam_Folate-sensitive_fs_Fra10Ac1	-	no_errors	FRA10AC1	HGNC	ENSG00000148690				46	0	0	36	11	23.4043
KIAA1377	0	genome.wustl.edu	37	11	101833287	101833287	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	101833287	101833287	T	-	DEL	KIAA1377	ENST00000263468	human	ensembl	74_37	+1	known	frame_shift_del	c.1521	p.F508fs	0.002	NULL	NULL	-	no_errors	KIAA1377	HGNC	ENSG00000110318				46	0	0	30	7	18.9189
DYNC2H1	0	genome.wustl.edu	37	11	103349968	103349969	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	103349968	103349969	-	A	INS	DYNC2H1	ENST00000398093	human	ensembl	74_37	+1	known	frame_shift_ins	c.12932_12933	p.N4313fs	0.996:0.857	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240				75	0	0	43	7	14
CASP5	0	genome.wustl.edu	37	11	104874011	104874011	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	104874011	104874011	T	-	DEL	CASP5	ENST00000393141	human	ensembl	74_37	-1	known	frame_shift_del	c.572	p.N191fs	0.006	pirsf_Caspase_IL-1_beta	pfam_Pept_C14_caspase,pfam_CARD,superfamily_DEATH-like_dom,smart_CARD,smart_Pept_C14A_p45_core,pirsf_Caspase_IL-1_beta,pfscan_CARD,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14A_p45_core	-	no_errors	CASP5	HGNC	ENSG00000137757				150	0	0	91	26	22.2222
CUL5	0	genome.wustl.edu	37	11	107965657	107965658	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	107965657	107965658	-	A	INS	CUL5	ENST00000393094	human	ensembl	74_37	+1	known	frame_shift_ins	c.1686_1687	p.N564fs	1.000:1.000	pfam_Cullin_N,superfamily_Cullin_homology,smart_Cullin_homology,pfscan_Cullin_homology	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL5	HGNC	ENSG00000166266				90	0	0	60	5	7.69231
DDX10	0	genome.wustl.edu	37	11	108544239	108544239	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	108544239	108544239	A	-	DEL	DDX10	ENST00000322536	human	ensembl	74_37	+1	known	frame_shift_del	c.232	p.T80fs	0.988	pfscan_RNA_helicase_DEAD_Q_motif	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX10	HGNC	ENSG00000178105				98	0	0	40	12	23.0769
C11orf57	0	genome.wustl.edu	37	11	111953289	111953289	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	111953289	111953289	A	-	DEL	C11orf57	ENST00000393047	human	ensembl	74_37	+1	known	frame_shift_del	c.475	p.K161fs	1.000	NULL	NULL	-	no_errors	C11orf57	HGNC	ENSG00000150776				268	0	0	196	41	17.2996
REXO2	0	genome.wustl.edu	37	11	114320750	114320750	+	RNA	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	114320750	114320750	T	-	DEL	REXO2	ENST00000544507	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	REXO2	HGNC	ENSG00000076043				116	0	0	68	15	18.0723
DDX6	0	genome.wustl.edu	37	11	118629613	118629614	+	Splice_Site	INS	-	-	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	118629613	118629614	-	G	INS	DDX6	ENST00000264018	human	ensembl	74_37	-1	known	splice_site_ins	c.865-3_865-2	e8-2	1.000:0.856	-	-	-	no_errors	DDX6	HGNC	ENSG00000110367				141	0	0	109	16	12.8
PDZD3	0	genome.wustl.edu	37	11	119058146	119058146	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	119058146	119058146	T	-	DEL	PDZD3	ENST00000392817	human	ensembl	74_37	+1	known	frame_shift_del	c.696	p.F233fs	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD3	HGNC	ENSG00000172367				28	0	0	29	9	23.6842
OR8D4	0	genome.wustl.edu	37	11	123777442	123777442	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	123777442	123777442	T	-	DEL	OR8D4	ENST00000321355	human	ensembl	74_37	+1	known	frame_shift_del	c.304	p.F104fs	0.939	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8D4	HGNC	ENSG00000181518				279	0	0	247	17	6.43939
VSIG2	0	genome.wustl.edu	37	11	124620740	124620740	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	124620740	124620740	G	-	DEL	VSIG2	ENST00000326621	human	ensembl	74_37	-1	known	frame_shift_del	c.297	p.T100fs	1.000	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	VSIG2	HGNC	ENSG00000019102				49	0	0	24	3	11.1111
MUC5B	0	genome.wustl.edu	37	11	1262591	1262591	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	1262591	1262591	C	-	DEL	MUC5B	ENST00000447027	human	ensembl	74_37	+1	known	frame_shift_del	c.4490	p.S1499fs	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983				17	0	0	8	2	20
MUC15	0	genome.wustl.edu	37	11	26587427	26587427	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	26587427	26587427	T	-	DEL	MUC15	ENST00000436318	human	ensembl	74_37	-1	known	frame_shift_del	c.60	p.K20fs	0.000	NULL	NULL	-	no_errors	MUC15	HGNC	ENSG00000169550				65	0	0	46	4	8
CCDC73	0	genome.wustl.edu	37	11	32635951	32635951	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	32635951	32635951	T	-	DEL	CCDC73	ENST00000335185	human	ensembl	74_37	-1	known	frame_shift_del	c.1913	p.N638fs	0.024	NULL	NULL	-	no_errors	CCDC73	HGNC	ENSG00000186714				35	0	0	25	10	28.5714
CCDC73	0	genome.wustl.edu	37	11	32637520	32637520	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	32637520	32637520	T	-	DEL	CCDC73	ENST00000335185	human	ensembl	74_37	-1	known	frame_shift_del	c.1341	p.E448fs	0.000	NULL	NULL	-	no_errors	CCDC73	HGNC	ENSG00000186714				70	0	0	43	18	29.5082
OR51E2	0	genome.wustl.edu	37	11	4703475	4703475	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	4703475	4703475	A	-	DEL	OR51E2	ENST00000396950	human	ensembl	74_37	-1	known	frame_shift_del	c.467	p.F156fs	0.027	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51E2	HGNC	ENSG00000167332				71	0	0	49	4	7.54717
FOLH1	0	genome.wustl.edu	37	11	49179535	49179535	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	49179535	49179535	T	-	DEL	FOLH1	ENST00000256999	human	ensembl	74_37	-1	known	frame_shift_del	c.1501	p.S501fs	0.999	NULL	pfam_TFR-like_dimer_dom,pfam_Protease-assoc_domain,pfam_Peptidase_M28,superfamily_TFR-like_dimer_dom	-	no_errors	FOLH1	HGNC	ENSG00000086205				120	0	0	101	24	19.2
OR52A5	0	genome.wustl.edu	37	11	5153679	5153679	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	5153679	5153679	A	-	DEL	OR52A5	ENST00000307388	human	ensembl	74_37	-1	known	frame_shift_del	c.194	p.L65fs	0.870	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52A5	HGNC	ENSG00000171944				125	0	0	95	8	7.76699
TRIM51HP	0	genome.wustl.edu	37	11	55065031	55065032	+	RNA	INS	-	-	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	55065031	55065032	-	T	INS	TRIM51HP	ENST00000526016	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.009:0.010	-	-	-	no_errors	TRIM51HP	HGNC	ENSG00000166007				70	0	0	57	5	8.06452
OR5D14	0	genome.wustl.edu	37	11	55563305	55563305	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	55563305	55563305	A	-	DEL	OR5D14	ENST00000335605	human	ensembl	74_37	+1	known	frame_shift_del	c.274	p.S93fs	0.009	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5D14	HGNC	ENSG00000186113				73	0	0	47	18	27.6923
TRIM51	0	genome.wustl.edu	37	11	55653610	55653610	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	55653610	55653610	A	-	DEL	TRIM51	ENST00000449290	human	ensembl	74_37	+1	known	frame_shift_del	c.423	p.M144fs	0.001	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM51	HGNC	ENSG00000124900				70	0	0	35	9	20.4545
CTNND1	0	genome.wustl.edu	37	11	57569589	57569589	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	57569589	57569589	A	-	DEL	CTNND1	ENST00000399050	human	ensembl	74_37	+1	known	frame_shift_del	c.1341	p.N449fs	1.000	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND1	HGNC	ENSG00000198561				383	0	0	320	59	15.5673
OR5B12	0	genome.wustl.edu	37	11	58207027	58207028	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	58207027	58207028	-	A	INS	OR5B12	ENST00000302572	human	ensembl	74_37	-1	known	frame_shift_ins	c.598_597	p.V199fs	0.006:0.000	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR5B12	HGNC	ENSG00000172362				77	0	0	55	6	9.83607
FADS1	0	genome.wustl.edu	37	11	61572224	61572224	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	61572224	61572224	G	-	DEL	FADS1	ENST00000350997	human	ensembl	74_37	-1	known	frame_shift_del	c.986	p.P329fs	1.000	pfam_Fatty_acid_desaturase-1,pirsf_Fatty_acid/sphinglp_desaturase	pfam_Fatty_acid_desaturase-1,pfam_Cyt_B5-like_heme/steroid-bd,superfamily_Cyt_B5-like_heme/steroid-bd,pirsf_Fatty_acid/sphinglp_desaturase,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Cyt_B5-like_heme/steroid-bd	-	no_errors	FADS1	HGNC	ENSG00000149485				76	0	0	34	13	27.6596
MTA2	0	genome.wustl.edu	37	11	62365601	62365601	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	62365601	62365601	A	-	DEL	MTA2	ENST00000278823	human	ensembl	74_37	-1	known	frame_shift_del	c.385	p.Y129fs	1.000	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	pfam_BAH_dom,pfam_ELM2_dom,pfam_Znf_GATA,superfamily_Homeodomain-like,smart_BAH_dom,smart_SANT/Myb,smart_Znf_GATA,pfscan_BAH_dom,pfscan_ELM2_dom	-	no_errors	MTA2	HGNC	ENSG00000149480				172	0	0	128	30	18.9873
SLC3A2	0	genome.wustl.edu	37	11	62649529	62649529	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	62649529	62649529	A	-	DEL	SLC3A2	ENST00000377892	human	ensembl	74_37	+1	known	frame_shift_del	c.985	p.K331fs	1.000	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	-	no_errors	SLC3A2	HGNC	ENSG00000168003				96	0	0	75	26	25.7426
RTN3	0	genome.wustl.edu	37	11	63525705	63525705	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	63525705	63525705	A	-	DEL	RTN3	ENST00000341307	human	ensembl	74_37	+1	known	frame_shift_del	c.684	p.K229fs	1.000	NULL	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN3	HGNC	ENSG00000133318				84	0	0	55	10	15.3846
VEGFB	0	genome.wustl.edu	37	11	64004663	64004663	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	64004663	64004663	A	-	DEL	VEGFB	ENST00000309422	human	ensembl	74_37	+1	known	frame_shift_del	c.379	p.K129fs	1.000	pfscan_PDGF/VEGF_dom	pfam_PDGF/VEGF_dom,smart_PDGF/VEGF_dom,pfscan_PDGF/VEGF_dom	-	no_errors	VEGFB	HGNC	ENSG00000173511				164	0	0	112	25	18.2482
NRXN2	0	genome.wustl.edu	37	11	64457919	64457919	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	64457919	64457919	C	-	DEL	NRXN2	ENST00000265459	human	ensembl	74_37	-1	known	frame_shift_del	c.808	p.A270fs	1.000	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN2	HGNC	ENSG00000110076				23	0	0	10	5	33.3333
BATF2	0	genome.wustl.edu	37	11	64764370	64764370	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	64764370	64764370	C	-	DEL	BATF2	ENST00000301887	human	ensembl	74_37	-1	known	frame_shift_del	c.17	p.G6fs	0.000	NULL	pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	BATF2	HGNC	ENSG00000168062				44	0	0	39	5	11.3636
SF3B2	0	genome.wustl.edu	37	11	65836146	65836146	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	65836146	65836146	A	-	DEL	SF3B2	ENST00000322535	human	ensembl	74_37	+1	known	frame_shift_del	c.2618	p.K875fs	1.000	NULL	pfam_DUF382,pfam_PSP,pfam_SAP_dom,smart_SAP_dom,smart_PSP,pfscan_SAP_dom	-	no_errors	SF3B2	HGNC	ENSG00000087365				36	0	0	26	8	23.5294
ENSG00000245156	0	genome.wustl.edu	37	11	66039143	66039143	+	RNA	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	66039143	66039143	A	-	DEL	ENSG00000245156	ENST00000501708	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.020	-	-	-	no_errors	RP11-867G23.3	Clone_based_vega_gene	ENSG00000245156				10	0	0	2	8	80
RAB1B	0	genome.wustl.edu	37	11	66039888	66039888	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	66039888	66039888	G	-	DEL	RAB1B	ENST00000311481	human	ensembl	74_37	+1	known	frame_shift_del	c.236	p.A81fs	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_EF_GTP-bd_dom,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_EF_GTP-bd_dom,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB1B	HGNC	ENSG00000174903				66	0	0	38	7	15.5556
USP35	0	genome.wustl.edu	37	11	77920856	77920856	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	77920856	77920856	C	-	DEL	USP35	ENST00000529308	human	ensembl	74_37	+1	known	frame_shift_del	c.1955	p.T655fs	0.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	-	no_errors	USP35	HGNC	ENSG00000118369				22	0	0	12	7	36.8421
ANKRD42	0	genome.wustl.edu	37	11	82936075	82936075	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	82936075	82936075	A	-	DEL	ANKRD42	ENST00000393392	human	ensembl	74_37	+1	known	frame_shift_del	c.681	p.D229fs	0.440	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD42	HGNC	ENSG00000137494				111	0	0	62	13	17.3333
SYTL2	0	genome.wustl.edu	37	11	85436878	85436878	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	85436878	85436878	T	-	DEL	SYTL2	ENST00000359152	human	ensembl	74_37	-1	known	frame_shift_del	c.2194	p.T732fs	0.002	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	SYTL2	HGNC	ENSG00000137501				130	0	0	110	19	14.7287
FZD4	0	genome.wustl.edu	37	11	86662812	86662812	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	86662812	86662812	A	-	DEL	FZD4	ENST00000531380	human	ensembl	74_37	-1	known	frame_shift_del	c.986	p.L329fs	1.000	pfam_Frizzled,pfscan_GPCR_2-like	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD4	HGNC	ENSG00000174804				59	0	0	36	2	5.26316
TYR	0	genome.wustl.edu	37	11	88911521	88911521	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	88911521	88911521	T	-	DEL	TYR	ENST00000263321	human	ensembl	74_37	+1	known	frame_shift_del	c.400	p.F135fs	1.000	superfamily_Unchr_di-copper_centre	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre,prints_Tyrosinase	-	no_errors	TYR	HGNC	ENSG00000077498				188	0	0	169	9	5.05618
TMEM41B	0	genome.wustl.edu	37	11	9308018	9308018	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	9308018	9308018	A	-	DEL	TMEM41B	ENST00000299596	human	ensembl	74_37	-1	known	frame_shift_del	c.690	p.F230fs	1.000	pfam_SNARE_assoc	pfam_SNARE_assoc	-	no_errors	TMEM41B	HGNC	ENSG00000166471				183	0	0	118	19	13.8686
MRE11A	0	genome.wustl.edu	37	11	94189473	94189473	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	94189473	94189473	T	-	DEL	MRE11A	ENST00000323929	human	ensembl	74_37	-1	known	frame_shift_del	c.1532	p.N511fs	0.998	pirsf_DNA_repair_Mre11	pfam_Mre11_DNA-bd,pfam_PEstase_dom,pirsf_DNA_repair_Mre11,tigrfam_DNA_repair_Mre11	-	no_errors	MRE11A	HGNC	ENSG00000020922				71	0	0	46	16	25.8065
CEP57	0	genome.wustl.edu	37	11	95555113	95555113	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	11	95555113	95555113	A	-	DEL	CEP57	ENST00000325542	human	ensembl	74_37	+1	known	frame_shift_del	c.778	p.K262fs	1.000	pfam_Cep57_MT-bd_dom	pfam_Cep57_MT-bd_dom	-	no_errors	CEP57	HGNC	ENSG00000166037				77	0	0	48	10	17.2414
UTP20	0	genome.wustl.edu	37	12	101680157	101680157	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	101680157	101680157	T	-	DEL	UTP20	ENST00000261637	human	ensembl	74_37	+1	known	frame_shift_del	c.385	p.L131fs	1.000	superfamily_ARM-type_fold	pfam_DRIM,superfamily_ARM-type_fold	-	no_errors	UTP20	HGNC	ENSG00000120800				219	0	0	186	41	18.0617
MTERFD3	0	genome.wustl.edu	37	12	107371846	107371846	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	107371846	107371846	T	-	DEL	MTERFD3	ENST00000240050	human	ensembl	74_37	-1	known	frame_shift_del	c.647	p.N216fs	1.000	pfam_Mit_transcrip_term-rel,smart_Mit_transcrip_term-rel	pfam_Mit_transcrip_term-rel,smart_Mit_transcrip_term-rel	-	no_errors	MTERFD3	HGNC	ENSG00000120832				88	0	0	48	11	18.6441
ASCL4	0	genome.wustl.edu	37	12	108169097	108169097	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	108169097	108169097	C	-	DEL	ASCL4	ENST00000342331	human	ensembl	74_37	+1	known	frame_shift_del	c.105	p.L37fs	0.003	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	ASCL4	HGNC	ENSG00000187855				27	0	0	14	5	26.3158
TAS2R50	0	genome.wustl.edu	37	12	11139432	11139432	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	11139432	11139432	A	-	DEL	TAS2R50	ENST00000506868	human	ensembl	74_37	-1	known	frame_shift_del	c.28	p.S10fs	0.001	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R50	HGNC	ENSG00000212126				87	0	0	80	12	13.0435
TMEM116	0	genome.wustl.edu	37	12	112369427	112369427	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	112369427	112369427	A	-	DEL	TMEM116	ENST00000552374	human	ensembl	74_37	-1	known	frame_shift_del	c.1012	p.*338fs	0.999	NULL	prints_GCR1-cAMP_receptor	-	no_errors	TMEM116	HGNC	ENSG00000198270				108	0	0	96	8	7.69231
ERP29	0	genome.wustl.edu	37	12	112460287	112460288	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	112460287	112460288	-	G	INS	ERP29	ENST00000261735	human	ensembl	74_37	+1	known	frame_shift_ins	c.617_618	p.K208fs	1.000:1.000	pfam_ER_p29_C,superfamily_ER_p29_C,pirsf_ER_p29	pfam_ERp29_N,pfam_ER_p29_C,superfamily_ER_p29_C,superfamily_Thioredoxin-like_fold,pirsf_ER_p29	-	no_errors	ERP29	HGNC	ENSG00000089248				98	0	0	68	16	19.0476
OAS2	0	genome.wustl.edu	37	12	113433214	113433214	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	113433214	113433214	T	-	DEL	OAS2	ENST00000342315	human	ensembl	74_37	+1	known	frame_shift_del	c.562	p.F189fs	0.935	pfam_2-5-oligoAdlate_synth_1_dom2/C	pfam_2-5-oligoAdlate_synth_1_dom2/C,pfam_Nucleotidyltransferase,pfscan_2-5-oligoadenylate_synth_N	-	no_errors	OAS2	HGNC	ENSG00000111335				124	0	0	108	15	12.1951
RNF10	0	genome.wustl.edu	37	12	121014514	121014514	+	RNA	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	121014514	121014514	T	-	DEL	RNF10	ENST00000535470	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.011	-	-	-	no_errors	RNF10	HGNC	ENSG00000022840				104	0	0	100	20	16.6667
CCDC92	0	genome.wustl.edu	37	12	124421800	124421800	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	124421800	124421800	G	-	DEL	CCDC92	ENST00000238156	human	ensembl	74_37	-1	known	frame_shift_del	c.801	p.I268fs	1.000	NULL	NULL	-	no_errors	CCDC92	HGNC	ENSG00000119242				24	0	0	17	4	19.0476
UBC	0	genome.wustl.edu	37	12	125397670	125397671	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	125397670	125397671	CT	-	DEL	UBC	ENST00000339647	human	ensembl	74_37	-1	known	frame_shift_del	c.648_647	p.E216fs	1.000:1.000	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup,prints_Ubiquitin	-	no_errors	UBC	HGNC	ENSG00000150991				253	0	0	176	47	21.0762
RPL22P19	0	genome.wustl.edu	37	12	125420367	125420367	+	RNA	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	125420367	125420367	T	-	DEL	RPL22P19	ENST00000480427	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RPL22P19	HGNC	ENSG00000241129				18	0	0	13	4	23.5294
GPR19	0	genome.wustl.edu	37	12	12814274	12814274	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	12814274	12814274	T	-	DEL	GPR19	ENST00000332427	human	ensembl	74_37	-1	known	frame_shift_del	c.1109	p.N370fs	1.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR19	HGNC	ENSG00000183150				198	1	0.502513	160	30	15.7895
EMP1	0	genome.wustl.edu	37	12	13364427	13364427	+	RNA	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	13364427	13364427	A	-	DEL	EMP1	ENST00000542289	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	EMP1	HGNC	ENSG00000134531				120	1	0.826446	100	38	27.5362
ATF7IP	0	genome.wustl.edu	37	12	14576873	14576874	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	14576873	14576874	-	A	INS	ATF7IP	ENST00000261168	human	ensembl	74_37	+1	known	frame_shift_ins	c.24_25	p.V10fs	1.000:1.000	NULL	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	ATF7IP	HGNC	ENSG00000171681				74	0	0	64	15	18.9873
C12orf60	0	genome.wustl.edu	37	12	14976481	14976481	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	14976481	14976481	A	-	DEL	C12orf60	ENST00000330828	human	ensembl	74_37	+1	known	frame_shift_del	c.612	p.K205fs	0.000	NULL	NULL	-	no_errors	C12orf60	HGNC	ENSG00000182993				92	0	0	94	16	14.5455
LINC00477	0	genome.wustl.edu	37	12	24736562	24736562	+	RNA	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	24736562	24736562	A	-	DEL	LINC00477	ENST00000483544	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.301	-	-	-	no_errors	LINC00477	HGNC	ENSG00000197503				90	0	0	73	5	6.41026
IPO8	0	genome.wustl.edu	37	12	30818767	30818767	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	30818767	30818767	T	-	DEL	IPO8	ENST00000256079	human	ensembl	74_37	-1	known	frame_shift_del	c.1234	p.M412fs	1.000	pfam_Cse1,superfamily_ARM-type_fold	pfam_Importin-beta_N,pfam_Cse1,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	IPO8	HGNC	ENSG00000133704				112	0	0	78	19	19.5876
FAM60A	0	genome.wustl.edu	37	12	31448178	31448178	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	31448178	31448178	T	-	DEL	FAM60A	ENST00000337682	human	ensembl	74_37	-1	known	frame_shift_del	c.218	p.N73fs	1.000	NULL	NULL	-	no_errors	FAM60A	HGNC	ENSG00000139146				48	0	0	38	10	20.8333
ALG10	0	genome.wustl.edu	37	12	34179326	34179326	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	34179326	34179326	T	-	DEL	ALG10	ENST00000266483	human	ensembl	74_37	+1	known	frame_shift_del	c.898	p.S302fs	0.975	pfam_Alg10,pirsf_Alg10	pfam_Alg10,pirsf_Alg10	-	no_errors	ALG10	HGNC	ENSG00000139133				223	0	0	157	39	19.898
ALG10B	0	genome.wustl.edu	37	12	38714473	38714473	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	38714473	38714473	T	-	DEL	ALG10B	ENST00000308742	human	ensembl	74_37	+1	known	frame_shift_del	c.880	p.S296fs	1.000	pfam_Alg10,pirsf_Alg10	pfam_Alg10,pirsf_Alg10	-	no_errors	ALG10B	HGNC	ENSG00000175548				218	0	0	165	34	17.0854
SCAF11	0	genome.wustl.edu	37	12	46320481	46320482	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	46320481	46320482	-	T	INS	SCAF11	ENST00000369367	human	ensembl	74_37	-1	known	frame_shift_ins	c.3003_3002	p.N1001fs	0.545:0.856	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	SCAF11	HGNC	ENSG00000139218				201	1	0.49505	164	41	20
SLC38A4	0	genome.wustl.edu	37	12	47170771	47170771	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	47170771	47170771	T	-	DEL	SLC38A4	ENST00000266579	human	ensembl	74_37	-1	known	frame_shift_del	c.1090	p.M364fs	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC38A4	HGNC	ENSG00000139209				122	0	0	89	23	20.5357
NDUFA9	0	genome.wustl.edu	37	12	4794302	4794303	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	4794302	4794303	AA	-	DEL	NDUFA9	ENST00000540688	human	ensembl	74_37	+1	putative	frame_shift_del	c.51_52	p.N21fs	0.000:0.000	NULL	NULL	-	no_errors	NDUFA9	HGNC	ENSG00000139180				12	0	0	6	6	50
CCNT1	0	genome.wustl.edu	37	12	49087682	49087682	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	49087682	49087682	T	-	DEL	CCNT1	ENST00000261900	human	ensembl	74_37	-1	known	frame_shift_del	c.1315	p.M439fs	1.000	NULL	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNT1	HGNC	ENSG00000129315				109	0	0	75	19	20.2128
GALNT6	0	genome.wustl.edu	37	12	51773457	51773459	+	In_Frame_Del	DEL	CCT	CCT	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	CCT	CCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	51773457	51773459	CCT	-	DEL	GALNT6	ENST00000356317	human	ensembl	74_37	-1	known	in_frame_del	c.109_107	p.E36in_frame_del	0.951:0.927:0.936	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT6	HGNC	ENSG00000139629				64	0	0	57	6	9.52381
SMUG1	0	genome.wustl.edu	37	12	54577401	54577402	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	54577401	54577402	-	C	INS	SMUG1	ENST00000505128	human	ensembl	74_37	-1	novel	frame_shift_ins	c.324_323	p.S109fs	0.000:0.713	NULL	superfamily_Uracil-DNA_glycosylase-like	-	no_errors	SMUG1	HGNC	ENSG00000123415				55	0	0	61	11	15.2778
OR6C75	0	genome.wustl.edu	37	12	55759486	55759486	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	55759486	55759486	T	-	DEL	OR6C75	ENST00000343399	human	ensembl	74_37	+1	known	frame_shift_del	c.592	p.L200fs	0.582	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6C75	HGNC	ENSG00000187857				114	0	0	105	26	19.8473
STAT2	0	genome.wustl.edu	37	12	56742816	56742817	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	56742816	56742817	-	G	INS	STAT2	ENST00000314128	human	ensembl	74_37	-1	known	frame_shift_ins	c.1468_1467	p.K489fs	0.000:0.000	pfam_STAT_TF_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_STAT2_C,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT2	HGNC	ENSG00000170581				81	0	0	49	10	16.9492
MYO1A	0	genome.wustl.edu	37	12	57422573	57422573	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	57422573	57422573	T	-	DEL	MYO1A	ENST00000300119	human	ensembl	74_37	-1	known	frame_shift_del	c.3098	p.K1033fs	1.000	pfam_Myosin_tail_2	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYO1A	HGNC	ENSG00000166866				126	0	0	94	20	17.5439
STAT6	0	genome.wustl.edu	37	12	57499094	57499094	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	57499094	57499094	G	-	DEL	STAT6	ENST00000300134	human	ensembl	74_37	-1	known	frame_shift_del	c.841	p.Q281fs	1.000	pfam_STAT_TF_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT6	HGNC	ENSG00000166888				46	0	0	45	4	8.16327
LRP1	0	genome.wustl.edu	37	12	57603939	57603940	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	57603939	57603940	-	C	INS	LRP1	ENST00000243077	human	ensembl	74_37	+1	known	frame_shift_ins	c.12567_12568	p.D4192fs	0.037:0.113	superfamily_Growth_fac_rcpt_N_dom	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384				50	0	0	21	3	12.5
B4GALNT1	0	genome.wustl.edu	37	12	58025103	58025103	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	58025103	58025103	C	-	DEL	B4GALNT1	ENST00000341156	human	ensembl	74_37	-1	known	frame_shift_del	c.263	p.G88fs	0.099	pirsf_GM2_synthase	pfam_Glyco_trans_2,pirsf_GM2_synthase	-	no_errors	B4GALNT1	HGNC	ENSG00000135454				82	0	0	62	14	18.4211
CYP27B1	0	genome.wustl.edu	37	12	58160653	58160654	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	58160653	58160654	-	C	INS	CYP27B1	ENST00000228606	human	ensembl	74_37	-1	known	frame_shift_ins	c.172_171	p.L57fs	0.999:0.430	superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP27B1	HGNC	ENSG00000111012				69	0	0	60	8	11.7647
METTL21B	0	genome.wustl.edu	37	12	58174037	58174037	+	Splice_Site	DEL	G	G	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	58174037	58174037	G	-	DEL	METTL21B	ENST00000300209	human	ensembl	74_37	+1	known	splice_site_del	c.290-1	e3-1	1.000	-	-	-	no_errors	METTL21B	HGNC	ENSG00000123427				52	0	0	32	7	17.9487
MON2	0	genome.wustl.edu	37	12	62946678	62946678	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	62946678	62946678	T	-	DEL	MON2	ENST00000393630	human	ensembl	74_37	+1	known	frame_shift_del	c.2937	p.F981fs	1.000	superfamily_ARM-type_fold	pfam_DUF1981_Sec7_assoc,superfamily_ARM-type_fold	-	no_errors	MON2	HGNC	ENSG00000061987				114	0	0	78	28	26.4151
CD9	0	genome.wustl.edu	37	12	6347089	6347089	+	RNA	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	6347089	6347089	T	-	DEL	CD9	ENST00000481267	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.010	-	-	-	no_errors	CD9	HGNC	ENSG00000010278				16	0	0	11	2	15.3846
AVPR1A	0	genome.wustl.edu	37	12	63541343	63541343	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	63541343	63541343	A	-	DEL	AVPR1A	ENST00000299178	human	ensembl	74_37	-1	known	frame_shift_del	c.1053	p.F351fs	0.998	pfam_7TM_GPCR_serpentine_rcpt_Srv,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_DUF1856,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Vprs_V1A_rcpt,prints_Vasoprsn_rcpt,prints_GPCR_Rhodpsn	-	no_errors	AVPR1A	HGNC	ENSG00000166148				157	0	0	136	22	13.9241
TNFRSF1A	0	genome.wustl.edu	37	12	6439819	6439821	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	6439819	6439821	GAG	-	DEL	TNFRSF1A	ENST00000162749	human	ensembl	74_37	-1	known	in_frame_del	c.684_682	p.L228in_frame_del	0.016:0.008:0.000	NULL	pfam_TNFR/NGFR_Cys_rich_reg,pfam_Death_domain,superfamily_DEATH-like_dom,smart_TNFR/NGFR_Cys_rich_reg,smart_Death_domain,pfscan_Death_domain,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_1A	-	no_errors	TNFRSF1A	HGNC	ENSG00000067182				88	0	0	58	9	13.4328
SRGAP1	0	genome.wustl.edu	37	12	64491024	64491024	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	64491024	64491024	A	-	DEL	SRGAP1	ENST00000355086	human	ensembl	74_37	+1	known	frame_shift_del	c.1682	p.N562fs	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_FCH_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Fuc/Ara_isomerase_C,smart_FCH_dom,smart_RhoGAP_dom,smart_SH3_domain,pfscan_FCH_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	SRGAP1	HGNC	ENSG00000196935				50	0	0	40	7	14.8936
TBK1	0	genome.wustl.edu	37	12	64875701	64875701	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	64875701	64875701	T	-	DEL	TBK1	ENST00000331710	human	ensembl	74_37	+1	known	frame_shift_del	c.892	p.F299fs	1.000	smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TBK1	HGNC	ENSG00000183735				86	0	0	72	18	20
TBC1D30	0	genome.wustl.edu	37	12	65269557	65269557	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	65269557	65269557	A	-	DEL	TBC1D30	ENST00000229088	human	ensembl	74_37	+1	known	frame_shift_del	c.2764	p.K923fs	0.974	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D30	HGNC	ENSG00000111490				18	0	0	13	3	18.75
TMBIM4	0	genome.wustl.edu	37	12	66531937	66531937	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	66531937	66531937	A	-	DEL	TMBIM4	ENST00000358230	human	ensembl	74_37	-1	known	frame_shift_del	c.520	p.Y174fs	0.028	pfam_Bax_inhibitor_1-related	pfam_Bax_inhibitor_1-related	-	no_errors	TMBIM4	HGNC	ENSG00000155957				65	0	0	44	8	15.3846
CHD4	0	genome.wustl.edu	37	12	6711546	6711546	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	6711546	6711546	T	-	DEL	CHD4	ENST00000309577	human	ensembl	74_37	-1	known	frame_shift_del	c.218	p.K73fs	1.000	NULL	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642				222	1	0.44843	152	24	13.6364
COPS7A	0	genome.wustl.edu	37	12	6839847	6839847	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	6839847	6839847	A	-	DEL	COPS7A	ENST00000229251	human	ensembl	74_37	+1	known	frame_shift_del	c.649	p.T219fs	0.969	NULL	pfam_PCI_dom,smart_PCI_dom	-	no_errors	COPS7A	HGNC	ENSG00000111652				69	0	0	46	6	11.5385
LOC100507250	0	genome.wustl.edu	37	12	69079471	69079473	+	RNA	DEL	AAA	AAA	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	69079471	69079473	AAA	-	DEL	LOC100507250	ENST00000433116	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.042:0.051:0.054	-	-	-	no_errors	RP11-637A17.2	Clone_based_vega_gene	ENSG00000247363				8	0	0	3	2	40
MDM2	0	genome.wustl.edu	37	12	69233090	69233090	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	69233090	69233090	C	-	DEL	MDM2	ENST00000462284	human	ensembl	74_37	+1	known	frame_shift_del	c.955	p.L321fs	1.000	pfam_Znf_RanBP2,pirsf_p53_neg-reg_MDM_2/4,pfscan_Znf_RanBP2	pfam_SWIB_MDM2_domain,pfam_Znf_RanBP2,superfamily_SWIB_MDM2_domain,pirsf_p53_neg-reg_MDM_2/4,pfscan_Znf_RanBP2,pfscan_Znf_RING	-	no_errors	MDM2	HGNC	ENSG00000135679				160	0	0	115	30	20.6897
TSPAN8	0	genome.wustl.edu	37	12	71523157	71523157	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	71523157	71523157	T	-	DEL	TSPAN8	ENST00000247829	human	ensembl	74_37	-1	known	frame_shift_del	c.614	p.N205fs	0.000	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN8	HGNC	ENSG00000127324				54	0	0	37	11	22.9167
CEP290	0	genome.wustl.edu	37	12	88524079	88524079	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	88524079	88524079	T	-	DEL	CEP290	ENST00000309041	human	ensembl	74_37	-1	known	frame_shift_del	c.635	p.N212fs	1.000	NULL	NULL	-	no_errors	CEP290	HGNC	ENSG00000198707				202	0	0	143	31	17.8161
ATP2B1	0	genome.wustl.edu	37	12	90024431	90024431	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	90024431	90024431	A	-	DEL	ATP2B1	ENST00000393164	human	ensembl	74_37	-1	putative	frame_shift_del	c.8	p.L3fs	0.011	pfam_ATPase_P-typ_transduc_dom_A	pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B1	HGNC	ENSG00000070961				80	0	0	52	3	5.45455
A2M	0	genome.wustl.edu	37	12	9262560	9262560	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	9262560	9262560	A	-	DEL	A2M	ENST00000318602	human	ensembl	74_37	-1	known	frame_shift_del	c.576	p.L194fs	0.030	pfam_A2M_N	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,superfamily_Beta-lactam/transpept-like,superfamily_Cupredoxin	-	no_errors	A2M	HGNC	ENSG00000175899				165	0	0	150	29	16.2011
VEZT	0	genome.wustl.edu	37	12	95650969	95650969	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	95650969	95650969	T	-	DEL	VEZT	ENST00000436874	human	ensembl	74_37	+1	known	frame_shift_del	c.212	p.S74fs	0.065	NULL	NULL	-	no_errors	VEZT	HGNC	ENSG00000028203				35	0	0	19	5	20.8333
USP44	0	genome.wustl.edu	37	12	95927128	95927128	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	95927128	95927128	A	-	DEL	USP44	ENST00000258499	human	ensembl	74_37	-1	known	frame_shift_del	c.905	p.L302fs	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP44	HGNC	ENSG00000136014				78	0	0	52	5	8.77193
C12orf55	0	genome.wustl.edu	37	12	97078974	97078974	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	12	97078974	97078974	G	-	DEL	C12orf55	ENST00000524981	human	ensembl	74_37	+1	putative	frame_shift_del	c.5972	p.C1993fs	1.000	NULL	superfamily_Fibronectin_type3	-	no_errors	C12orf55	HGNC	ENSG00000188596				80	0	0	51	9	15
TM9SF2	0	genome.wustl.edu	37	13	100192902	100192902	+	RNA	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	100192902	100192902	T	-	DEL	TM9SF2	ENST00000466555	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.045	-	-	-	no_errors	TM9SF2	HGNC	ENSG00000125304				43	0	0	36	7	16.2791
NALCN	0	genome.wustl.edu	37	13	101760070	101760070	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	101760070	101760070	T	-	DEL	NALCN	ENST00000251127	human	ensembl	74_37	-1	known	frame_shift_del	c.2435	p.K812fs	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	NALCN	HGNC	ENSG00000102452				107	0	0	76	19	20
ERCC5	0	genome.wustl.edu	37	13	103524612	103524612	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	103524612	103524612	A	-	DEL	ERCC5	ENST00000355739	human	ensembl	74_37	+1	known	frame_shift_del	c.2743	p.K917fs	1.000	superfamily_5-3_exonuclease_C,tigrfam_XPG/Rad2_eukaryotes	pfam_XPG_DNA_repair_N,pfam_XPG-I_dom,superfamily_5-3_exonuclease_C,smart_XPG_DNA_repair_N,smart_XPG-I_dom,smart_HhH2,prints_XPG/Rad2_eukaryotes,prints_XPG/Rad2,tigrfam_XPG/Rad2_eukaryotes	-	no_errors	ERCC5	HGNC	ENSG00000134899				83	0	0	55	16	22.5352
FAM155A	0	genome.wustl.edu	37	13	108518338	108518338	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	108518338	108518338	C	-	DEL	FAM155A	ENST00000375915	human	ensembl	74_37	-1	known	frame_shift_del	c.607	p.D203fs	0.252	NULL	NULL	-	no_errors	FAM155A	HGNC	ENSG00000204442				72	0	0	50	11	18.0328
COL4A2	0	genome.wustl.edu	37	13	111114439	111114439	+	RNA	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	111114439	111114439	T	-	DEL	COL4A2	ENST00000478681	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	COL4A2	HGNC	ENSG00000134871				38	0	0	20	6	23.0769
GAS6	0	genome.wustl.edu	37	13	114542718	114542718	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	114542718	114542718	C	-	DEL	GAS6	ENST00000357389	human	ensembl	74_37	-1	known	frame_shift_del	c.449	p.G150fs	0.997	smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,pfam_GLA_domain,superfamily_ConA-like_lec_gl_sf,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Laminin_G,prints_GLA_domain	-	no_errors	GAS6	HGNC	ENSG00000183087				92	0	0	35	14	28.5714
MPHOSPH8	0	genome.wustl.edu	37	13	20245322	20245322	+	RNA	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	20245322	20245322	T	-	DEL	MPHOSPH8	ENST00000496525	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MPHOSPH8	HGNC	ENSG00000196199				33	0	0	15	5	25
RNF6	0	genome.wustl.edu	37	13	26788241	26788241	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	26788241	26788241	A	-	DEL	RNF6	ENST00000346166	human	ensembl	74_37	-1	known	frame_shift_del	c.1778	p.L593fs	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF6	HGNC	ENSG00000127870				173	0	0	131	12	8.39161
HMGB1	0	genome.wustl.edu	37	13	31037599	31037600	+	RNA	INS	-	-	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	31037599	31037600	-	T	INS	HMGB1	ENST00000468384	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001:0.001	-	-	-	no_errors	HMGB1	HGNC	ENSG00000189403				60	0	0	50	14	21.875
BRCA2	0	genome.wustl.edu	37	13	32911443	32911443	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	32911443	32911443	A	-	DEL	BRCA2	ENST00000380152	human	ensembl	74_37	+1	known	frame_shift_del	c.2951	p.N986fs	0.001	pirsf_BRCA2	pfam_DNA_recomb/repair_BRCA2_hlx,pfam_BRCA2_repeat,pfam_BRCA2_OB_3,pfam_BRCA2_OB_1,pfam_Tower,superfamily_DNA_recomb/repair_BRCA2_hlx,superfamily_NA-bd_OB-fold,pirsf_BRCA2,pfscan_BRCA2_repeat	-	no_errors	BRCA2	HGNC	ENSG00000139618				112	0	0	109	12	9.91736
PDS5B	0	genome.wustl.edu	37	13	33338694	33338694	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	33338694	33338694	A	-	DEL	PDS5B	ENST00000315596	human	ensembl	74_37	+1	known	frame_shift_del	c.3586	p.S1198fs	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	PDS5B	HGNC	ENSG00000083642				63	0	0	61	10	14.0845
NBEA	0	genome.wustl.edu	37	13	35733663	35733663	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	35733663	35733663	A	-	DEL	NBEA	ENST00000310336	human	ensembl	74_37	+1	known	frame_shift_del	c.3355	p.N1121fs	1.000	NULL	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl_sf,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat_dom	-	no_errors	NBEA	HGNC	ENSG00000172915				79	0	0	46	10	17.8571
SPG20	0	genome.wustl.edu	37	13	36909271	36909272	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	36909271	36909272	-	A	INS	SPG20	ENST00000355182	human	ensembl	74_37	-1	known	frame_shift_ins	c.697_696	p.V232fs	1.000:1.000	NULL	pfam_Senescence/spartin,pfam_MIT,smart_MIT	-	no_errors	SPG20	HGNC	ENSG00000133104				148	0	0	79	16	16.8421
DGKH	0	genome.wustl.edu	37	13	42729890	42729891	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	42729890	42729891	AG	-	DEL	DGKH	ENST00000337343	human	ensembl	74_37	+1	known	frame_shift_del	c.577_578	p.L196fs	0.918:0.997	pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_SAM_2,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_SAM_type1,superfamily_SAM/pointed,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_SAM,pfscan_Pleckstrin_homology,pfscan_SAM,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKH	HGNC	ENSG00000102780				91	0	0	52	12	18.75
CPB2	0	genome.wustl.edu	37	13	46658431	46658431	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	46658431	46658431	T	-	DEL	CPB2	ENST00000181383	human	ensembl	74_37	-1	known	frame_shift_del	c.198	p.K66fs	0.677	pfam_Prot_inh_M14A,superfamily_Prot_inh_propept	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPB2	HGNC	ENSG00000080618				138	0	0	85	18	17.4757
SETDB2	0	genome.wustl.edu	37	13	50065970	50065970	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	50065970	50065970	A	-	DEL	SETDB2	ENST00000317257	human	ensembl	74_37	+1	known	frame_shift_del	c.2145	p.I718fs	0.859	NULL	pfam_SET_dom,pfam_Pre-SET_dom,pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_dom,smart_Methyl_CpG_DNA-bd,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Methyl_CpG_DNA-bd,pfscan_SET_dom,pfscan_Pre-SET_dom	-	no_errors	SETDB2	HGNC	ENSG00000136169				74	0	0	54	11	16.9231
EBPL	0	genome.wustl.edu	37	13	50235209	50235209	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	50235209	50235209	A	-	DEL	EBPL	ENST00000242827	human	ensembl	74_37	-1	known	frame_shift_del	c.516	p.F172fs	0.997	pfam_EBP	pfam_EBP	-	no_errors	EBPL	HGNC	ENSG00000123179				56	0	0	49	9	15.5172
KPNA3	0	genome.wustl.edu	37	13	50279819	50279819	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	50279819	50279819	T	-	DEL	KPNA3	ENST00000261667	human	ensembl	74_37	-1	known	frame_shift_del	c.1310	p.N437fs	1.000	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,pfam_Importin-a_IBB,pfam_HEAT,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,pfscan_Importin-a_IBB	-	no_errors	KPNA3	HGNC	ENSG00000102753				174	0	0	113	20	15.0376
ALG11	0	genome.wustl.edu	37	13	52598258	52598258	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	52598258	52598258	T	-	DEL	ALG11	ENST00000521508	human	ensembl	74_37	+1	known	frame_shift_del	c.392	p.L133fs	1.000	NULL	pfam_Glyco_trans_1	-	no_errors	ALG11	HGNC	ENSG00000253710				128	0	0	75	29	27.8846
CKAP2	0	genome.wustl.edu	37	13	53049034	53049034	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	53049034	53049034	A	-	DEL	CKAP2	ENST00000378037	human	ensembl	74_37	+1	known	frame_shift_del	c.1810	p.K606fs	0.999	NULL	NULL	-	no_errors	CKAP2	HGNC	ENSG00000136108				58	0	0	55	7	11.2903
FBXL3	0	genome.wustl.edu	37	13	77581683	77581683	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	77581683	77581683	A	-	DEL	FBXL3	ENST00000355619	human	ensembl	74_37	-1	known	frame_shift_del	c.884	p.L295fs	1.000	NULL	pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom	-	no_errors	FBXL3	HGNC	ENSG00000005812				86	0	0	77	5	6.09756
DOCK9	0	genome.wustl.edu	37	13	99540398	99540398	+	RNA	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	13	99540398	99540398	A	-	DEL	DOCK9	ENST00000473165	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DOCK9	HGNC	ENSG00000088387				21	0	0	10	5	33.3333
OR4K1	0	genome.wustl.edu	37	14	20403904	20403904	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	20403904	20403904	T	-	DEL	OR4K1	ENST00000285600	human	ensembl	74_37	+1	known	frame_shift_del	c.79	p.F28fs	0.957	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4K1	HGNC	ENSG00000155249				559	0	0	432	42	8.86076
TINF2	0	genome.wustl.edu	37	14	24709343	24709344	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	24709343	24709344	CA	-	DEL	TINF2	ENST00000267415	human	ensembl	74_37	-1	known	frame_shift_del	c.1148_1147	p.C383fs	0.735:0.692	NULL	NULL	-	no_errors	TINF2	HGNC	ENSG00000092330				217	0	0	163	37	18.5
TGM1	0	genome.wustl.edu	37	14	24718610	24718610	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	24718610	24718610	G	-	DEL	TGM1	ENST00000206765	human	ensembl	74_37	-1	known	frame_shift_del	c.2363	p.P788fs	0.530	superfamily_Transglutaminase_C	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM1	HGNC	ENSG00000092295				60	0	0	39	7	15.2174
NYNRIN	0	genome.wustl.edu	37	14	24879247	24879247	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	24879247	24879247	G	-	DEL	NYNRIN	ENST00000382554	human	ensembl	74_37	+1	known	frame_shift_del	c.2247	p.A751fs	0.035	NULL	pfam_RNase_Zc3h12,superfamily_RNaseH-like_dom,pfscan_Integrase_cat-core	-	no_errors	NYNRIN	HGNC	ENSG00000205978				23	0	0	19	4	17.3913
KLHL28	0	genome.wustl.edu	37	14	45414534	45414534	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	45414534	45414534	A	-	DEL	KLHL28	ENST00000396128	human	ensembl	74_37	-1	known	frame_shift_del	c.598	p.Y200fs	1.000	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL28	HGNC	ENSG00000179454				92	0	0	73	17	18.8889
MIS18BP1	0	genome.wustl.edu	37	14	45693722	45693722	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	45693722	45693722	T	-	DEL	MIS18BP1	ENST00000310806	human	ensembl	74_37	-1	known	frame_shift_del	c.2068	p.S690fs	0.797	NULL	pfam_SANTA,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MIS18BP1	HGNC	ENSG00000129534				126	0	0	98	19	16.2393
WDHD1	0	genome.wustl.edu	37	14	55433239	55433239	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	55433239	55433239	T	-	DEL	WDHD1	ENST00000360586	human	ensembl	74_37	-1	known	frame_shift_del	c.2264	p.N755fs	0.995	NULL	pfam_WD40_repeat,pfam_DUF3639,pfam_TIF_beta_prop-like,superfamily_WD40_repeat_dom,superfamily_HMG_box_dom,smart_WD40_repeat,smart_HMG_box_dom,pfscan_HMG_box_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDHD1	HGNC	ENSG00000198554				86	0	0	46	10	17.8571
ENSG00000258856	0	genome.wustl.edu	37	14	58097302	58097302	+	RNA	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	58097302	58097302	A	-	DEL	ENSG00000258856	ENST00000600311	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CTD-2325K12.1	Clone_based_vega_gene	ENSG00000258856				175	0	0	156	36	18.75
KIAA0586	0	genome.wustl.edu	37	14	58895013	58895013	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	58895013	58895013	A	-	DEL	KIAA0586	ENST00000261244	human	ensembl	74_37	+1	known	frame_shift_del	c.31	p.K13fs	0.000	NULL	NULL	-	no_errors	KIAA0586	HGNC	ENSG00000100578				75	0	0	52	8	13.3333
DAAM1	0	genome.wustl.edu	37	14	59835592	59835592	+	RNA	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	59835592	59835592	T	-	DEL	DAAM1	ENST00000553966	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.059	-	-	-	no_errors	DAAM1	HGNC	ENSG00000100592				47	0	0	40	8	16.6667
SYNE2	0	genome.wustl.edu	37	14	64519480	64519480	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	64519480	64519480	A	-	DEL	SYNE2	ENST00000358025	human	ensembl	74_37	+1	known	frame_shift_del	c.8849	p.T2952fs	0.205	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654				69	0	0	50	11	18.0328
SYNE2	0	genome.wustl.edu	37	14	64519888	64519888	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	64519888	64519888	T	-	DEL	SYNE2	ENST00000358025	human	ensembl	74_37	+1	known	frame_shift_del	c.9257	p.L3087fs	0.505	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654				68	0	0	65	14	17.7215
SYNE2	0	genome.wustl.edu	37	14	64634076	64634081	+	In_Frame_Del	DEL	GGCCAC	GGCCAC	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	GGCCAC	GGCCAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	64634076	64634081	GGCCAC	-	DEL	SYNE2	ENST00000358025	human	ensembl	74_37	+1	known	in_frame_del	c.16731_16736	p.TA5581in_frame_del	0.994:1.000:1.000:0.974:0.989:0.986	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654				65	0	0	40	10	20
C14orf169	0	genome.wustl.edu	37	14	73959864	73959864	+	RNA	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	73959864	73959864	A	-	DEL	C14orf169	ENST00000531973	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C14orf169	HGNC	ENSG00000255242				68	0	0	56	16	22.2222
ELMSAN1	0	genome.wustl.edu	37	14	74206605	74206606	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	74206605	74206606	-	G	INS	ELMSAN1	ENST00000286523	human	ensembl	74_37	-1	known	frame_shift_ins	c.107_106	p.Q36fs	0.675:0.686	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	ELMSAN1	HGNC	ENSG00000156030				58	0	0	47	9	16.0714
MLH3	0	genome.wustl.edu	37	14	75514833	75514833	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	75514833	75514833	A	-	DEL	MLH3	ENST00000355774	human	ensembl	74_37	-1	known	frame_shift_del	c.1526	p.L509fs	0.000	NULL	pfam_MutL_C,pfam_DNA_mismatch_repair_C,pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_WW_dom,smart_MutL_C	-	no_errors	MLH3	HGNC	ENSG00000119684				96	0	0	85	8	8.60215
TTLL5	0	genome.wustl.edu	37	14	76420882	76420882	+	RNA	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	76420882	76420882	T	-	DEL	TTLL5	ENST00000554972	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	TTLL5	HGNC	ENSG00000119685				55	0	0	41	9	18
STON2	0	genome.wustl.edu	37	14	81743374	81743374	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	81743374	81743374	C	-	DEL	STON2	ENST00000267540	human	ensembl	74_37	-1	known	frame_shift_del	c.2281	p.A761fs	1.000	pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pirsf_Stonin,pfscan_Clathrin_mu_C	pfam_Stonin2_N,pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pirsf_Stonin,pfscan_Clathrin_mu_C,pfscan_SHD	-	no_errors	STON2	HGNC	ENSG00000140022				112	0	0	105	7	6.25
PTPN21	0	genome.wustl.edu	37	14	88940113	88940113	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	88940113	88940113	T	-	DEL	PTPN21	ENST00000328736	human	ensembl	74_37	-1	known	frame_shift_del	c.2545	p.I849fs	0.995	pirsf_Tyr_Pase_non-rcpt_typ-14/21	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,superfamily_FERM_central,smart_Band_41_domain,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-14/21,pfscan_FERM_domain,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam	-	no_errors	PTPN21	HGNC	ENSG00000070778				111	0	0	83	13	13.5417
EML5	0	genome.wustl.edu	37	14	89154769	89154769	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	89154769	89154769	T	-	DEL	EML5	ENST00000554922	human	ensembl	74_37	-1	known	frame_shift_del	c.2588	p.N863fs	0.034	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_HELP,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML5	HGNC	ENSG00000165521				291	0	0	239	40	14.3369
BTBD7	0	genome.wustl.edu	37	14	93730184	93730184	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	93730184	93730184	A	-	DEL	BTBD7	ENST00000334746	human	ensembl	74_37	-1	known	frame_shift_del	c.1318	p.Y440fs	1.000	pfam_BACK,smart_BACK	pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD7	HGNC	ENSG00000011114				123	0	0	109	21	16.1538
SERPINA1	0	genome.wustl.edu	37	14	94844885	94844885	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	94844885	94844885	G	-	DEL	SERPINA1	ENST00000355814	human	ensembl	74_37	-1	known	frame_shift_del	c.1158	p.E387fs	0.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINA1	HGNC	ENSG00000197249				88	0	0	55	10	15.3846
ENSG00000257275	0	genome.wustl.edu	37	14	96178149	96178150	+	RNA	DEL	AG	AG	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	14	96178149	96178150	AG	-	DEL	ENSG00000257275	ENST00000547644	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.001	-	-	-	no_errors	RP11-164H13.1	Clone_based_vega_gene	ENSG00000257275				25	0	0	26	3	10.3448
NIPA2	0	genome.wustl.edu	37	15	23021239	23021239	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	23021239	23021239	T	-	DEL	NIPA2	ENST00000337451	human	ensembl	74_37	-1	known	frame_shift_del	c.98	p.K33fs	1.000	pfam_Mg_trans_NIPA	pfam_Mg_trans_NIPA,pfam_DMT	-	no_errors	NIPA2	HGNC	ENSG00000140157				138	0	0	142	11	7.18954
SNHG14	0	genome.wustl.edu	37	15	25227367	25227367	+	RNA	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	25227367	25227367	T	-	DEL	SNHG14	ENST00000551361	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNHG14	HGNC	ENSG00000224078				14	0	0	8	5	38.4615
SNORD116-6	0	genome.wustl.edu	37	15	25310193	25310193	+	RNA	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	25310193	25310193	A	-	DEL	SNORD116-6	ENST00000384711	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SNORD116-6	HGNC	ENSG00000207442				174	0	0	69	57	45.2381
SNORD116-26	0	genome.wustl.edu	37	15	25344663	25344664	+	RNA	DEL	AA	AA	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	25344663	25344664	AA	-	DEL	SNORD116-26	ENST00000516006	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001:0.000	-	-	-	no_errors	SNORD116-26	HGNC	ENSG00000251815				96	0	0	91	17	15.7407
HERC2	0	genome.wustl.edu	37	15	28525215	28525215	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	28525215	28525215	T	-	DEL	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	frame_shift_del	c.541	p.S181fs	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731				74	0	0	52	8	13.3333
FAN1	0	genome.wustl.edu	37	15	31196894	31196894	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	31196894	31196894	A	-	DEL	FAN1	ENST00000362065	human	ensembl	74_37	+1	known	frame_shift_del	c.28	p.R12fs	0.000	NULL	pfam_VRR_NUC,smart_Znf_Rad18_put	-	no_errors	FAN1	HGNC	ENSG00000198690				232	1	0.429185	179	39	17.8899
CHRM5	0	genome.wustl.edu	37	15	34355101	34355102	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	34355101	34355102	-	A	INS	CHRM5	ENST00000383263	human	ensembl	74_37	+1	known	frame_shift_ins	c.183_184	p.T62fs	0.986:1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Musac_Ach_M5_rcpt,prints_Musac_Ach_rcpt,prints_GPCR_Rhodpsn	-	no_errors	CHRM5	HGNC	ENSG00000184984				82	0	0	69	4	5.47945
CASC5	0	genome.wustl.edu	37	15	40917784	40917785	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	40917784	40917785	-	A	INS	CASC5	ENST00000346991	human	ensembl	74_37	+1	known	frame_shift_ins	c.5400_5401	p.I1802fs	1.000:1.000	NULL	NULL	-	no_errors	CASC5	HGNC	ENSG00000137812				97	0	0	56	14	20
NUSAP1	0	genome.wustl.edu	37	15	41672442	41672442	+	RNA	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	41672442	41672442	T	-	DEL	NUSAP1	ENST00000558123	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	NUSAP1	HGNC	ENSG00000137804				10	0	0	4	7	63.6364
MAP1A	0	genome.wustl.edu	37	15	43819858	43819858	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	43819858	43819858	C	-	DEL	MAP1A	ENST00000399453	human	ensembl	74_37	+1	known	frame_shift_del	c.6187	p.R2065fs	0.638	NULL	NULL	-	no_errors	MAP1A	HGNC	ENSG00000166963				46	0	0	41	9	18
SPG11	0	genome.wustl.edu	37	15	44905698	44905698	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	44905698	44905698	T	-	DEL	SPG11	ENST00000261866	human	ensembl	74_37	-1	known	frame_shift_del	c.3075	p.E1026fs	1.000	NULL	NULL	-	no_errors	SPG11	HGNC	ENSG00000104133				75	0	0	66	12	15.3846
ENSG00000259185	0	genome.wustl.edu	37	15	52201131	52201131	+	RNA	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	52201131	52201131	T	-	DEL	ENSG00000259185	ENST00000559302	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP11-56B16.4	Clone_based_vega_gene	ENSG00000259185				19	0	0	6	8	57.1429
PRTG	0	genome.wustl.edu	37	15	55912892	55912892	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	55912892	55912892	A	-	DEL	PRTG	ENST00000389286	human	ensembl	74_37	-1	known	frame_shift_del	c.3167	p.F1056fs	1.000	NULL	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	PRTG	HGNC	ENSG00000166450				84	0	0	81	9	10
NARG2	0	genome.wustl.edu	37	15	60745782	60745783	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	60745782	60745783	AA	-	DEL	NARG2	ENST00000561114	human	ensembl	74_37	-1	putative	frame_shift_del	c.1145_1144	p.F382fs	0.000:0.000	NULL	NULL	-	no_errors	NARG2	HGNC	ENSG00000128915				47	0	0	37	9	19.5652
ZNF609	0	genome.wustl.edu	37	15	64967247	64967247	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	64967247	64967247	A	-	DEL	ZNF609	ENST00000326648	human	ensembl	74_37	+1	known	frame_shift_del	c.2194	p.K734fs	1.000	NULL	pfscan_Znf_C2H2	-	no_errors	ZNF609	HGNC	ENSG00000180357				268	1	0.371747	214	43	16.7315
TIPIN	0	genome.wustl.edu	37	15	66672095	66672095	+	RNA	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	66672095	66672095	T	-	DEL	TIPIN	ENST00000561773	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	TIPIN	HGNC	ENSG00000075131				69	0	0	56	11	16.4179
PIAS1	0	genome.wustl.edu	37	15	68438921	68438921	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	68438921	68438921	A	-	DEL	PIAS1	ENST00000249636	human	ensembl	74_37	+1	known	frame_shift_del	c.711	p.N239fs	0.999	NULL	pfam_Znf_MIZ,smart_SAP_dom,pfscan_Znf_MIZ,pfscan_SAP_dom	-	no_errors	PIAS1	HGNC	ENSG00000033800				78	0	0	51	24	32
NOX5	0	genome.wustl.edu	37	15	69331226	69331226	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	69331226	69331226	T	-	DEL	NOX5	ENST00000388866	human	ensembl	74_37	+1	known	frame_shift_del	c.1401	p.H470fs	0.970	pfam_FAD-bd_8,superfamily_Riboflavin_synthase-like_b-brl	pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	NOX5	HGNC	ENSG00000255346				198	0	0	167	16	8.74317
MYO9A	0	genome.wustl.edu	37	15	72190580	72190580	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	72190580	72190580	A	-	DEL	MYO9A	ENST00000424560	human	ensembl	74_37	-1	known	frame_shift_del	c.4264	p.Y1422fs	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO9A	HGNC	ENSG00000066933				83	0	0	66	12	15.3846
SIN3A	0	genome.wustl.edu	37	15	75684749	75684749	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	75684749	75684749	A	-	DEL	SIN3A	ENST00000360439	human	ensembl	74_37	-1	known	frame_shift_del	c.2685	p.F895fs	1.000	NULL	pfam_PAH,pfam_HDAC_interact,superfamily_PAH,smart_HDAC_interact	-	no_errors	SIN3A	HGNC	ENSG00000169375				95	0	0	74	22	22.9167
KIAA1024	0	genome.wustl.edu	37	15	79750586	79750586	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	79750586	79750586	A	-	DEL	KIAA1024	ENST00000305428	human	ensembl	74_37	+1	known	frame_shift_del	c.2097	p.S702fs	0.527	NULL	pfam_UPF0258	-	no_errors	KIAA1024	HGNC	ENSG00000169330				175	1	0.568182	111	40	26.4901
FAH	0	genome.wustl.edu	37	15	80464493	80464493	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	80464493	80464493	T	-	DEL	FAH	ENST00000261755	human	ensembl	74_37	+1	known	frame_shift_del	c.609	p.F205fs	1.000	pfam_Fumarylacetoacetase_C,superfamily_Fumarylacetoacetase_C-rel,tigrfam_Fumarylacetoacetase	pfam_Fumarylacetoacetase_C,pfam_Fumarylacetoacetase_N,superfamily_Fumarylacetoacetase_C-rel,superfamily_Fumarylacetoacetase_N,tigrfam_Fumarylacetoacetase	-	no_errors	FAH	HGNC	ENSG00000103876				122	0	0	65	17	20.7317
IQGAP1	0	genome.wustl.edu	37	15	91018049	91018049	+	RNA	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	15	91018049	91018049	T	-	DEL	IQGAP1	ENST00000560020	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.121	-	-	-	no_errors	IQGAP1	HGNC	ENSG00000140575				12	0	0	7	3	30
RSL1D1	0	genome.wustl.edu	37	16	11931668	11931668	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	11931668	11931668	T	-	DEL	RSL1D1	ENST00000571133	human	ensembl	74_37	-1	known	frame_shift_del	c.1449	p.K483fs	0.009	NULL	pfam_Ribosomal_L1/biogenesis,superfamily_Ribosomal_L1-like	-	no_errors	RSL1D1	HGNC	ENSG00000171490				156	0	0	125	32	20.3822
KIAA0430	0	genome.wustl.edu	37	16	15727651	15727651	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	15727651	15727651	G	-	DEL	KIAA0430	ENST00000396368	human	ensembl	74_37	-1	known	frame_shift_del	c.1056	p.I353fs	0.999	pfam_NYN_limkain-b1	pfam_Limkain_b1_cons_dom,pfam_NYN_limkain-b1,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	KIAA0430	HGNC	ENSG00000166783				95	0	0	61	7	10.2941
MYH11	0	genome.wustl.edu	37	16	15802687	15802687	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	15802687	15802687	G	-	DEL	MYH11	ENST00000452625	human	ensembl	74_37	-1	known	frame_shift_del	c.5819	p.P1940fs	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH11	HGNC	ENSG00000133392				17	0	0	7	5	41.6667
KNOP1	0	genome.wustl.edu	37	16	19725908	19725908	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	19725908	19725908	T	-	DEL	KNOP1	ENST00000219837	human	ensembl	74_37	-1	known	frame_shift_del	c.450	p.K150fs	0.988	NULL	NULL	-	no_errors	KNOP1	HGNC	ENSG00000103550				124	0	0	72	7	8.86076
PDILT	0	genome.wustl.edu	37	16	20396001	20396001	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	20396001	20396001	A	-	DEL	PDILT	ENST00000302451	human	ensembl	74_37	-1	known	frame_shift_del	c.375	p.F125fs	1.000	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	PDILT	HGNC	ENSG00000169340				225	0	0	188	38	16.8142
DNAH3	0	genome.wustl.edu	37	16	21080787	21080787	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	21080787	21080787	C	-	DEL	DNAH3	ENST00000261383	human	ensembl	74_37	-1	known	frame_shift_del	c.3330	p.R1111fs	0.999	pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486				144	0	0	106	23	17.8295
GTF3C1	0	genome.wustl.edu	37	16	27509009	27509009	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	27509009	27509009	T	-	DEL	GTF3C1	ENST00000356183	human	ensembl	74_37	-1	known	frame_shift_del	c.2299	p.S767fs	0.542	NULL	pfam_TFIIIC_Bblock-bd	-	no_errors	GTF3C1	HGNC	ENSG00000077235				118	0	0	71	27	27.551
CREBBP	0	genome.wustl.edu	37	16	3817721	3817721	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	3817721	3817721	T	-	DEL	CREBBP	ENST00000262367	human	ensembl	74_37	-1	known	frame_shift_del	c.3250	p.I1084fs	1.000	superfamily_Bromodomain,smart_Bromodomain	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CREBBP	HGNC	ENSG00000005339				87	0	0	69	28	28.866
RBL2	0	genome.wustl.edu	37	16	53487517	53487517	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	53487517	53487517	A	-	DEL	RBL2	ENST00000262133	human	ensembl	74_37	+1	known	frame_shift_del	c.920	p.K309fs	1.000	NULL	pfam_RB_A,pfam_RB_B,pfam_RB_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	RBL2	HGNC	ENSG00000103479				116	0	0	78	19	19.5876
SLC6A2	0	genome.wustl.edu	37	16	55727960	55727960	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	55727960	55727960	G	-	DEL	SLC6A2	ENST00000219833	human	ensembl	74_37	+1	known	frame_shift_del	c.957	p.A321fs	0.992	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_noradrenaline	-	no_errors	SLC6A2	HGNC	ENSG00000103546				132	0	0	96	9	8.57143
DKFZP434H168	0	genome.wustl.edu	37	16	56226639	56226640	+	RNA	DEL	CA	CA	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	56226639	56226640	CA	-	DEL	DKFZP434H168	ENST00000567381	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.271:0.327	-	-	-	no_errors	CTD-2050B12.2	Clone_based_vega_gene	ENSG00000261439				18	0	0	14	4	22.2222
CCDC113	0	genome.wustl.edu	37	16	58287987	58287987	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	58287987	58287987	A	-	DEL	CCDC113	ENST00000219299	human	ensembl	74_37	+1	known	frame_shift_del	c.314	p.E107fs	0.046	NULL	NULL	-	no_errors	CCDC113	HGNC	ENSG00000103021				117	0	0	101	6	5.60748
NFAT5	0	genome.wustl.edu	37	16	69726420	69726422	+	In_Frame_Del	DEL	CAG	CAG	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	CAG	CAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	69726420	69726422	CAG	-	DEL	NFAT5	ENST00000432919	human	ensembl	74_37	+1	known	in_frame_del	c.2692_2694	p.Q901in_frame_del	0.966:0.976:0.988	NULL	pfam_RHD,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT,pfscan_RHD,prints_NFAT	-	no_errors	NFAT5	HGNC	ENSG00000102908				42	0	0	44	4	8.33333
WDR90	0	genome.wustl.edu	37	16	709106	709106	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	709106	709106	C	-	DEL	WDR90	ENST00000549091	human	ensembl	74_37	+1	novel	frame_shift_del	c.3032	p.P1013fs	0.000	NULL	pfam_WD40_repeat,pfam_DUF667,pfam_Nucleoporin_Nup160,superfamily_Quinonprotein_ADH-like_supfam,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR90	HGNC	ENSG00000161996				38	0	0	22	3	12
WWOX	0	genome.wustl.edu	37	16	78198099	78198099	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	78198099	78198099	T	-	DEL	WWOX	ENST00000566780	human	ensembl	74_37	+1	known	frame_shift_del	c.429	p.F144fs	0.998	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR	pfam_WW_dom,pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom,prints_Glc/ribitol_DH	-	no_errors	WWOX	HGNC	ENSG00000186153				54	0	0	27	10	27.027
MSLN	0	genome.wustl.edu	37	16	815527	815527	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	815527	815527	C	-	DEL	MSLN	ENST00000382862	human	ensembl	74_37	+1	known	frame_shift_del	c.705	p.P237fs	0.208	pfam_Mesothelin	pfam_Mesothelin	-	no_errors	MSLN	HGNC	ENSG00000102854				22	0	0	9	4	30.7692
GSE1	0	genome.wustl.edu	37	16	85682289	85682290	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	16	85682289	85682290	-	C	INS	GSE1	ENST00000253458	human	ensembl	74_37	+1	known	frame_shift_ins	c.358_359	p.V123fs	1.000:0.999	pfam_GSE-like	pfam_GSE-like	-	no_errors	GSE1	HGNC	ENSG00000131149				45	0	0	27	6	18.1818
ZNF287	0	genome.wustl.edu	37	17	16455580	16455581	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	16455580	16455581	CA	-	DEL	ZNF287	ENST00000395824	human	ensembl	74_37	-1	known	frame_shift_del	c.1876_1875	p.C625fs	1.000:1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF287	HGNC	ENSG00000141040				100	0	0	88	5	5.37634
TBC1D27	0	genome.wustl.edu	37	17	16828666	16828666	+	RNA	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	16828666	16828666	T	-	DEL	TBC1D27	ENST00000261651	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.938	-	-	-	no_errors	TBC1D27	HGNC	ENSG00000128438				18	0	0	6	4	40
GID4	0	genome.wustl.edu	37	17	17957486	17957486	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	17957486	17957486	A	-	DEL	GID4	ENST00000268719	human	ensembl	74_37	+1	known	frame_shift_del	c.544	p.K183fs	1.000	pfam_Vacuolar_import/degrad_Vid24	pfam_Vacuolar_import/degrad_Vid24	-	no_errors	GID4	HGNC	ENSG00000141034				133	0	0	86	23	21.1009
SPECC1	0	genome.wustl.edu	37	17	20108263	20108263	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	20108263	20108263	A	-	DEL	SPECC1	ENST00000261503	human	ensembl	74_37	+1	known	frame_shift_del	c.901	p.N303fs	0.000	NULL	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	SPECC1	HGNC	ENSG00000128487				171	0	0	111	56	33.5329
NLK	0	genome.wustl.edu	37	17	26449740	26449740	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	26449740	26449740	T	-	DEL	NLK	ENST00000407008	human	ensembl	74_37	+1	known	frame_shift_del	c.570	p.F192fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	NLK	HGNC	ENSG00000087095				114	0	0	89	32	26.4463
EFCAB5	0	genome.wustl.edu	37	17	28296061	28296061	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	28296061	28296061	A	-	DEL	EFCAB5	ENST00000394835	human	ensembl	74_37	+1	known	frame_shift_del	c.443	p.K150fs	0.000	NULL	pfscan_EF_hand_dom	-	no_errors	EFCAB5	HGNC	ENSG00000176927				30	0	0	33	15	31.25
NSRP1	0	genome.wustl.edu	37	17	28505167	28505167	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	28505167	28505167	A	-	DEL	NSRP1	ENST00000247026	human	ensembl	74_37	+1	known	frame_shift_del	c.250	p.K86fs	1.000	pfam_DUF2040	pfam_DUF2040	-	no_errors	NSRP1	HGNC	ENSG00000126653				87	0	0	72	10	12.1951
CCT6B	0	genome.wustl.edu	37	17	33255998	33255998	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	33255998	33255998	T	-	DEL	CCT6B	ENST00000314144	human	ensembl	74_37	-1	known	frame_shift_del	c.1506	p.K502fs	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,tigrfam_Chap_CCT_zeta	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_zeta	-	no_errors	CCT6B	HGNC	ENSG00000132141				73	0	0	66	4	5.71429
TOP2A	0	genome.wustl.edu	37	17	38546381	38546381	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	38546381	38546381	T	-	DEL	TOP2A	ENST00000423485	human	ensembl	74_37	-1	known	frame_shift_del	c.4303	p.R1435fs	0.997	pfam_DTHCT	pfam_Topo_IIA_A/C,pfam_Topo_IIA_bsu_dom2,pfam_DTHCT,pfam_HATPase_ATP-bd,superfamily_Topo_IIA_like_dom,superfamily_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,smart_Topo_IIA,smart_Topo_IIA_A/C,prints_TopoII_euk,prints_Topo_IIA,prints_Transcrpt_fac_NFYB/HAP3	-	no_errors	TOP2A	HGNC	ENSG00000131747				43	0	0	31	11	26.1905
DNAJC7	0	genome.wustl.edu	37	17	40134398	40134398	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	40134398	40134398	T	-	DEL	DNAJC7	ENST00000457167	human	ensembl	74_37	-1	known	frame_shift_del	c.1106	p.N369fs	1.000	NULL	pfam_TPR_1,pfam_TPR_2,pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_TPR_repeat,smart_DnaJ_domain,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJC7	HGNC	ENSG00000168259				133	0	0	86	41	32.2835
PLCD3	0	genome.wustl.edu	37	17	43195797	43195797	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	43195797	43195797	C	-	DEL	PLCD3	ENST00000322765	human	ensembl	74_37	-1	known	frame_shift_del	c.976	p.A326fs	1.000	pfam_PLipase_C_EF-hand-like	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCD3	HGNC	ENSG00000161714				67	0	0	49	14	22.2222
ARHGAP27	0	genome.wustl.edu	37	17	43480123	43480124	+	Frame_Shift_Del	DEL	GA	GA	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	43480123	43480124	GA	-	DEL	ARHGAP27	ENST00000428638	human	ensembl	74_37	-1	known	frame_shift_del	c.1700_1699	p.S567fs	0.170:0.002	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RhoGAP_dom,pfam_WW_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_WW_dom,smart_WW_dom,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_WW_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP27	HGNC	ENSG00000159314				81	0	0	64	6	8.57143
EFCAB13	0	genome.wustl.edu	37	17	45473297	45473297	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	45473297	45473297	A	-	DEL	EFCAB13	ENST00000331493	human	ensembl	74_37	+1	known	frame_shift_del	c.1899	p.K635fs	0.580	NULL	NULL	-	no_errors	EFCAB13	HGNC	ENSG00000178852				107	0	0	113	19	14.3939
TBX21	0	genome.wustl.edu	37	17	45822290	45822290	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	45822290	45822290	C	-	DEL	TBX21	ENST00000177694	human	ensembl	74_37	+1	known	frame_shift_del	c.1166	p.R391fs	0.039	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX21	HGNC	ENSG00000073861				55	0	0	58	4	6.45161
ZMYND15	0	genome.wustl.edu	37	17	4644013	4644013	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	4644013	4644013	G	-	DEL	ZMYND15	ENST00000433935	human	ensembl	74_37	+1	known	frame_shift_del	c.170	p.V58fs	1.000	NULL	pfam_Znf_MYND,pfscan_Znf_MYND	-	no_errors	ZMYND15	HGNC	ENSG00000141497				16	0	0	17	4	19.0476
LOC100130950	0	genome.wustl.edu	37	17	5126839	5126839	+	RNA	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	5126839	5126839	T	-	DEL	LOC100130950	ENST00000575601	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-333E1.1	Clone_based_vega_gene	ENSG00000261879				65	0	0	37	14	27.451
ANKFN1	0	genome.wustl.edu	37	17	54543825	54543825	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	54543825	54543825	T	-	DEL	ANKFN1	ENST00000318698	human	ensembl	74_37	+1	known	frame_shift_del	c.1675	p.F560fs	0.996	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Fibronectin_type3,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Fibronectin_type3	-	no_errors	ANKFN1	HGNC	ENSG00000153930				90	0	0	74	7	8.64198
RNF43	0	genome.wustl.edu	37	17	56435094	56435094	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	56435094	56435094	A	-	DEL	RNF43	ENST00000407977	human	ensembl	74_37	-1	known	frame_shift_del	c.2043	p.H683fs	0.064	NULL	pfam_Znf_C3HC4_RING-type,superfamily_PAS,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF43	HGNC	ENSG00000108375				146	0	0	112	25	18.2482
RNF43	0	genome.wustl.edu	37	17	56435161	56435161	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	56435161	56435161	C	-	DEL	RNF43	ENST00000407977	human	ensembl	74_37	-1	known	frame_shift_del	c.1976	p.G659fs	0.900	NULL	pfam_Znf_C3HC4_RING-type,superfamily_PAS,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF43	HGNC	ENSG00000108375				102	0	0	61	17	21.7949
HSF5	0	genome.wustl.edu	37	17	56565340	56565340	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	56565340	56565340	C	-	DEL	HSF5	ENST00000323777	human	ensembl	74_37	-1	known	frame_shift_del	c.296	p.G99fs	0.197	pfam_HSF_DNA-bd,smart_HSF_DNA-bd	pfam_HSF_DNA-bd,smart_HSF_DNA-bd	-	no_errors	HSF5	HGNC	ENSG00000176160				13	0	0	7	3	30
RPL12P38	0	genome.wustl.edu	37	17	58512419	58512419	+	RNA	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	58512419	58512419	A	-	DEL	RPL12P38	ENST00000588627	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	RPL12P38	HGNC	ENSG00000213228				14	0	0	12	8	40
TBX4	0	genome.wustl.edu	37	17	59556066	59556066	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	59556066	59556066	A	-	DEL	TBX4	ENST00000393853	human	ensembl	74_37	+1	known	frame_shift_del	c.628	p.N211fs	1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX4	HGNC	ENSG00000121075				165	0	0	108	24	18.1818
MIR633	0	genome.wustl.edu	37	17	61021673	61021673	+	RNA	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	61021673	61021673	A	-	DEL	MIR633	ENST00000384821	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	MIR633	HGNC	ENSG00000207552				13	0	0	8	4	33.3333
PITPNC1	0	genome.wustl.edu	37	17	65683214	65683214	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	65683214	65683214	A	-	DEL	PITPNC1	ENST00000299954	human	ensembl	74_37	+1	known	frame_shift_del	c.715	p.N240fs	1.000	pfam_PI_transfer	pfam_PI_transfer,prints_PI_transfer	-	no_errors	PITPNC1	HGNC	ENSG00000154217				165	0	0	165	12	6.77966
ABCA10	0	genome.wustl.edu	37	17	67210910	67210910	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	67210910	67210910	A	-	DEL	ABCA10	ENST00000269081	human	ensembl	74_37	-1	known	frame_shift_del	c.941	p.F314fs	0.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA10	HGNC	ENSG00000154263				90	0	0	64	23	26.4368
ABCA5	0	genome.wustl.edu	37	17	67302912	67302912	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	67302912	67302912	T	-	DEL	ABCA5	ENST00000392677	human	ensembl	74_37	-1	known	frame_shift_del	c.742	p.I248fs	0.517	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA5	HGNC	ENSG00000154265				34	0	0	39	8	17.0213
BCL6B	0	genome.wustl.edu	37	17	6927858	6927858	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	6927858	6927858	C	-	DEL	BCL6B	ENST00000293805	human	ensembl	74_37	+1	known	frame_shift_del	c.540	p.S183fs	0.003	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	BCL6B	HGNC	ENSG00000161940				99	0	0	78	6	7.14286
FDXR	0	genome.wustl.edu	37	17	72860240	72860240	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	72860240	72860240	G	-	DEL	FDXR	ENST00000455107	human	ensembl	74_37	-1	known	frame_shift_del	c.900	p.F301fs	0.000	NULL	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD	-	no_errors	FDXR	HGNC	ENSG00000161513				47	0	0	16	4	20
EFNB3	0	genome.wustl.edu	37	17	7612856	7612856	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	17	7612856	7612856	C	-	DEL	EFNB3	ENST00000226091	human	ensembl	74_37	+1	known	frame_shift_del	c.985	p.Q331fs	1.000	NULL	pfam_Ephrin,superfamily_Cupredoxin,prints_Ephrin	-	no_errors	EFNB3	HGNC	ENSG00000108947				52	0	0	37	12	24.4898
TRAPPC8	0	genome.wustl.edu	37	18	29488331	29488331	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	29488331	29488331	T	-	DEL	TRAPPC8	ENST00000283351	human	ensembl	74_37	-1	known	frame_shift_del	c.1173	p.K391fs	1.000	NULL	NULL	-	no_errors	TRAPPC8	HGNC	ENSG00000153339				67	0	0	68	6	8.10811
WBP11P1	0	genome.wustl.edu	37	18	30092751	30092752	+	RNA	INS	-	-	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	30092751	30092752	-	A	INS	WBP11P1	ENST00000567636	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.525:0.722	-	-	-	no_errors	WBP11P1	HGNC	ENSG00000260389				74	0	0	63	22	25.8824
FHOD3	0	genome.wustl.edu	37	18	34205516	34205516	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	34205516	34205516	C	-	DEL	FHOD3	ENST00000257209	human	ensembl	74_37	+1	known	frame_shift_del	c.1000	p.S336fs	0.999	superfamily_ARM-type_fold	pfam_FH2_Formin,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FHOD3	HGNC	ENSG00000134775				67	0	0	31	18	36.7347
CTIF	0	genome.wustl.edu	37	18	46163043	46163043	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	46163043	46163043	C	-	DEL	CTIF	ENST00000382998	human	ensembl	74_37	+1	known	frame_shift_del	c.239	p.P82fs	0.778	NULL	pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	-	no_errors	CTIF	HGNC	ENSG00000134030				19	0	0	14	5	26.3158
ME2	0	genome.wustl.edu	37	18	48473598	48473598	+	RNA	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	48473598	48473598	T	-	DEL	ME2	ENST00000585680	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ME2	HGNC	ENSG00000082212				56	0	0	70	14	16.6667
ZCCHC2	0	genome.wustl.edu	37	18	60242530	60242530	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	60242530	60242530	T	-	DEL	ZCCHC2	ENST00000269499	human	ensembl	74_37	+1	known	frame_shift_del	c.3216	p.L1075fs	0.996	NULL	pfam_Znf_CCHC,superfamily_Phox,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC2	HGNC	ENSG00000141664				51	0	0	40	18	31.0345
SERPINB10	0	genome.wustl.edu	37	18	61584739	61584739	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	61584739	61584739	A	-	DEL	SERPINB10	ENST00000238508	human	ensembl	74_37	+1	known	frame_shift_del	c.218	p.R76fs	0.998	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINB10	HGNC	ENSG00000242550				36	0	0	28	18	39.1304
RTTN	0	genome.wustl.edu	37	18	67697249	67697249	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	67697249	67697249	T	-	DEL	RTTN	ENST00000255674	human	ensembl	74_37	-1	known	frame_shift_del	c.5744	p.K1915fs	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	RTTN	HGNC	ENSG00000176225				118	0	0	116	27	18.8811
ENSG00000264475	0	genome.wustl.edu	37	18	7080101	7080102	+	RNA	INS	-	-	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	18	7080101	7080102	-	A	INS	ENSG00000264475	ENST00000581502	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.013	-	-	-	no_errors	RP11-76K13.3	Clone_based_vega_gene	ENSG00000264475				21	0	0	28	6	17.6471
SUGP1	0	genome.wustl.edu	37	19	19414748	19414748	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	19414748	19414748	G	-	DEL	SUGP1	ENST00000334782	human	ensembl	74_37	-1	known	frame_shift_del	c.643	p.H215fs	0.002	NULL	NULL	-	no_errors	SUGP1	HGNC	ENSG00000105705				133	0	0	92	23	20
ZNF493	0	genome.wustl.edu	37	19	21607422	21607422	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	21607422	21607422	A	-	DEL	ZNF493	ENST00000355504	human	ensembl	74_37	+1	known	frame_shift_del	c.1577	p.K527fs	0.998	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF493	HGNC	ENSG00000196268				73	0	0	59	15	20.2703
ZNF429	0	genome.wustl.edu	37	19	21720353	21720353	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	21720353	21720353	A	-	DEL	ZNF429	ENST00000358491	human	ensembl	74_37	+1	novel	frame_shift_del	c.1498	p.I502fs	0.909	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF429	HGNC	ENSG00000197013				111	0	0	72	19	20.8791
ZNF43	0	genome.wustl.edu	37	19	21992323	21992323	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	21992323	21992323	T	-	DEL	ZNF43	ENST00000354959	human	ensembl	74_37	-1	known	frame_shift_del	c.516	p.K172fs	0.096	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF43	HGNC	ENSG00000198521				36	0	0	33	11	25
ENSG00000221790	0	genome.wustl.edu	37	19	22785533	22785533	+	RNA	DEL	G	G	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	22785533	22785533	G	-	DEL	ENSG00000221790	ENST00000408863	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.006	-	-	-	no_errors	AC011467.1	Clone_based_ensembl_gene	ENSG00000221790				72	0	0	43	6	12.2449
ZNF675	0	genome.wustl.edu	37	19	23836656	23836656	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	23836656	23836656	T	-	DEL	ZNF675	ENST00000359788	human	ensembl	74_37	-1	known	frame_shift_del	c.1079	p.N360fs	0.997	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF675	HGNC	ENSG00000197372				83	0	0	66	17	20.4819
URI1	0	genome.wustl.edu	37	19	30428870	30428870	+	RNA	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	30428870	30428870	T	-	DEL	URI1	ENST00000574766	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	URI1	HGNC	ENSG00000105176				8	0	0	2	3	60
URI1	0	genome.wustl.edu	37	19	30496293	30496293	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	30496293	30496293	A	-	DEL	URI1	ENST00000542441	human	ensembl	74_37	+1	known	frame_shift_del	c.393	p.V134fs	0.993	pfam_Prefoldin_subunit_alpha,superfamily_Prefoldin	pfam_Prefoldin_subunit_alpha,superfamily_Prefoldin	-	no_errors	URI1	HGNC	ENSG00000105176				44	0	0	33	5	13.1579
TSHZ3	0	genome.wustl.edu	37	19	31769235	31769235	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	31769235	31769235	T	-	DEL	TSHZ3	ENST00000240587	human	ensembl	74_37	-1	known	frame_shift_del	c.1464	p.D489fs	0.971	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ3	HGNC	ENSG00000121297				269	0	0	219	38	14.786
C19orf40	0	genome.wustl.edu	37	19	33464997	33464997	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	33464997	33464997	A	-	DEL	C19orf40	ENST00000588258	human	ensembl	74_37	+1	known	frame_shift_del	c.275	p.T94fs	1.000	NULL	superfamily_RuvA_2-like	-	no_errors	C19orf40	HGNC	ENSG00000131944				72	0	0	63	20	24.0964
KMT2B	0	genome.wustl.edu	37	19	36216189	36216189	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	36216189	36216189	C	-	DEL	KMT2B	ENST00000222270	human	ensembl	74_37	+1	known	frame_shift_del	c.3597	p.P1201fs	0.130	pirsf_MeTrfase_trithorax,superfamily_Znf_FYVE_PHD,pfscan_Znf_PHD-finger	pirsf_MeTrfase_trithorax,pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KMT2B	Uniprot_gn	ENSG00000272333				29	0	0	16	4	20
APLP1	0	genome.wustl.edu	37	19	36362782	36362782	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	36362782	36362782	C	-	DEL	APLP1	ENST00000221891	human	ensembl	74_37	+1	known	frame_shift_del	c.694	p.P233fs	0.997	NULL	pfam_Amyloid_glyco_heparin-bd,pfam_APP_amyloid_C,superfamily_Amyloid_glyco_E2_domain,superfamily_Amyloid_glyco_heparin-bd,superfamily_Amyloid_glyco_Cu-bd,smart_Amyloid_glyco_extra,prints_Amyloid_glyco	-	no_errors	APLP1	HGNC	ENSG00000105290				68	0	0	37	13	26
CEACAM6	0	genome.wustl.edu	37	19	42259553	42259553	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	42259553	42259553	C	-	DEL	CEACAM6	ENST00000199764	human	ensembl	74_37	+1	known	frame_shift_del	c.7	p.S5fs	0.729	NULL	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	CEACAM6	HGNC	ENSG00000086548				141	0	0	109	8	6.83761
CEACAM3	0	genome.wustl.edu	37	19	42314895	42314895	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	42314895	42314895	C	-	DEL	CEACAM3	ENST00000357396	human	ensembl	74_37	+1	known	frame_shift_del	c.653	p.L220fs	0.002	NULL	pfam_Ig_V-set	-	no_errors	CEACAM3	HGNC	ENSG00000170956				85	0	0	46	8	14.8148
ZNF180	0	genome.wustl.edu	37	19	44981225	44981225	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	44981225	44981225	T	-	DEL	ZNF180	ENST00000221327	human	ensembl	74_37	-1	known	frame_shift_del	c.1473	p.K491fs	0.997	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF180	HGNC	ENSG00000167384				77	0	0	46	18	28.125
CD3EAP	0	genome.wustl.edu	37	19	45911872	45911872	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	45911872	45911872	A	-	DEL	CD3EAP	ENST00000589804	human	ensembl	74_37	+1	known	frame_shift_del	c.652	p.N220fs	0.178	pfam_DNA-dir_RNA_pol1_su_RPA34	pfam_DNA-dir_RNA_pol1_su_RPA34	-	no_errors	CD3EAP	HGNC	ENSG00000117877				153	1	0.649351	107	12	10.084
TEAD2	0	genome.wustl.edu	37	19	49850473	49850473	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	49850473	49850473	G	-	DEL	TEAD2	ENST00000311227	human	ensembl	74_37	-1	known	frame_shift_del	c.883	p.H295fs	0.961	pfam_TEA/ATTS,pirsf_TEF	pfam_TEA/ATTS,smart_TEA/ATTS,pirsf_TEF,pfscan_TEA/ATTS,prints_TEA/ATTS	-	no_errors	TEAD2	HGNC	ENSG00000074219				137	0	0	98	9	8.41121
MYBPC2	0	genome.wustl.edu	37	19	50963425	50963425	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	50963425	50963425	A	-	DEL	MYBPC2	ENST00000357701	human	ensembl	74_37	+1	known	frame_shift_del	c.2920	p.T976fs	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYBPC2	HGNC	ENSG00000086967				18	0	0	19	4	17.3913
SHANK1	0	genome.wustl.edu	37	19	51165516	51165516	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	51165516	51165516	C	-	DEL	SHANK1	ENST00000391814	human	ensembl	74_37	-1	known	frame_shift_del	c.6216	p.L2073fs	0.101	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SH3_2,pfam_SAM_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SH3_domain,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK1	HGNC	ENSG00000161681				16	0	0	14	5	26.3158
ZNF701	0	genome.wustl.edu	37	19	53086002	53086002	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	53086002	53086002	A	-	DEL	ZNF701	ENST00000301093	human	ensembl	74_37	+1	known	frame_shift_del	c.888	p.K298fs	0.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF701	HGNC	ENSG00000167562				102	0	0	59	19	24.359
MIR525	0	genome.wustl.edu	37	19	54200830	54200830	+	RNA	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	54200830	54200830	A	-	DEL	MIR525	ENST00000384978	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	MIR525	HGNC	ENSG00000207711				126	0	0	119	23	16.1972
ENSG00000267865	0	genome.wustl.edu	37	19	56220431	56220431	+	RNA	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	56220431	56220431	T	-	DEL	ENSG00000267865	ENST00000596293	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CTD-2611O12.8	Clone_based_vega_gene	ENSG00000267865				54	0	0	47	7	12.963
ZNF71	0	genome.wustl.edu	37	19	57132721	57132721	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	57132721	57132721	G	-	DEL	ZNF71	ENST00000328070	human	ensembl	74_37	+1	known	frame_shift_del	c.66	p.G24fs	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF71	HGNC	ENSG00000197951				52	0	0	20	10	33.3333
ZIM3	0	genome.wustl.edu	37	19	57646555	57646555	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	57646555	57646555	T	-	DEL	ZIM3	ENST00000269834	human	ensembl	74_37	-1	known	frame_shift_del	c.1150	p.I384fs	0.890	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZIM3	HGNC	ENSG00000141946				149	0	0	120	12	9.09091
ZNF814	0	genome.wustl.edu	37	19	58385707	58385708	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	58385707	58385708	-	T	INS	ZNF814	ENST00000435989	human	ensembl	74_37	-1	known	frame_shift_ins	c.1051_1050	p.H350fs	0.746:0.728	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF814	HGNC	ENSG00000204514				41	0	0	28	7	20
MUC16	0	genome.wustl.edu	37	19	9049103	9049103	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	9049103	9049103	A	-	DEL	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	frame_shift_del	c.32528	p.F10843fs	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				140	0	0	113	29	20.4225
MUC16	0	genome.wustl.edu	37	19	9065788	9065788	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	19	9065788	9065788	C	-	DEL	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	frame_shift_del	c.21658	p.D7220fs	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				251	0	0	158	56	26.1682
ATP6V1C2	0	genome.wustl.edu	37	2	10863073	10863075	+	In_Frame_Del	DEL	ATA	ATA	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	ATA	ATA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	10863073	10863075	ATA	-	DEL	ATP6V1C2	ENST00000272238	human	ensembl	74_37	+1	known	in_frame_del	c.98_100	p.N34in_frame_del	0.757:0.845:0.997	pfam_ATPase_V1-cplx_csu	pfam_ATPase_V1-cplx_csu	-	no_errors	ATP6V1C2	HGNC	ENSG00000143882				60	0	0	49	3	5.76923
TMEM87B	0	genome.wustl.edu	37	2	112839024	112839024	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	112839024	112839024	T	-	DEL	TMEM87B	ENST00000283206	human	ensembl	74_37	+1	known	frame_shift_del	c.767	p.L258fs	1.000	pfam_TM_rcpt_euk	pfam_TM_rcpt_euk	-	no_errors	TMEM87B	HGNC	ENSG00000153214				115	0	0	109	6	5.21739
ROCK2	0	genome.wustl.edu	37	2	11389837	11389837	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	11389837	11389837	A	-	DEL	ROCK2	ENST00000315872	human	ensembl	74_37	-1	known	frame_shift_del	c.412	p.W138fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Rho-assoc_coiled-coil_kin,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Rho-bd_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_tRNA-bd_arm,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,pirsf_Rho-assoc_coiled-coil_kin,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	ROCK2	HGNC	ENSG00000134318				186	0	0	135	38	21.9653
PTPN4	0	genome.wustl.edu	37	2	120677773	120677773	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	120677773	120677773	T	-	DEL	PTPN4	ENST00000263708	human	ensembl	74_37	+1	known	frame_shift_del	c.957	p.F321fs	1.000	pirsf_Tyr_Pase_non-rcpt_typ-3/4	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,pfam_PDZ,pfam_FERM-adjacent,superfamily_FERM_central,superfamily_PDZ,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-3/4,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	PTPN4	HGNC	ENSG00000088179				137	0	0	110	30	21.4286
EPB41L5	0	genome.wustl.edu	37	2	120918486	120918487	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	120918486	120918487	-	C	INS	EPB41L5	ENST00000263713	human	ensembl	74_37	+1	known	frame_shift_ins	c.1823_1824	p.K610fs	0.011:0.009	NULL	pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L5	HGNC	ENSG00000115109				197	0	0	147	23	13.5294
MKI67IP	0	genome.wustl.edu	37	2	122485323	122485323	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	122485323	122485323	T	-	DEL	MKI67IP	ENST00000285814	human	ensembl	74_37	-1	known	frame_shift_del	c.859	p.R287fs	1.000	NULL	pfam_hNIFK_FHA_Ki67_binding,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	MKI67IP	HGNC	ENSG00000155438				116	0	0	99	30	23.2558
IWS1	0	genome.wustl.edu	37	2	128252502	128252502	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	128252502	128252502	T	-	DEL	IWS1	ENST00000295321	human	ensembl	74_37	-1	known	frame_shift_del	c.1745	p.K582fs	1.000	NULL	pfam_TFIIS_N,superfamily_TFIIS_N	-	no_errors	IWS1	HGNC	ENSG00000163166				105	0	0	68	12	15
ENSG00000231731	0	genome.wustl.edu	37	2	128263364	128263366	+	RNA	DEL	AAA	AAA	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	128263364	128263366	AAA	-	DEL	ENSG00000231731	ENST00000599001	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.233:0.319:0.309	-	-	-	no_errors	AC010976.2	Clone_based_vega_gene	ENSG00000231731				29	0	0	35	9	20.4545
ACVR2A	0	genome.wustl.edu	37	2	148683686	148683686	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	148683686	148683686	A	-	DEL	ACVR2A	ENST00000241416	human	ensembl	74_37	+1	known	frame_shift_del	c.1303	p.K437fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_TGFB_receptor	-	no_errors	ACVR2A	HGNC	ENSG00000121989				128	1	0.775194	95	27	22.1311
RBM43	0	genome.wustl.edu	37	2	152112047	152112048	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	152112047	152112048	-	T	INS	RBM43	ENST00000331426	human	ensembl	74_37	-1	known	frame_shift_ins	c.214_213	p.V71fs	1.000:0.948	pfscan_RRM_dom	pfscan_RRM_dom	-	no_errors	RBM43	HGNC	ENSG00000184898				111	1	0.892857	77	19	19.7917
NEB	0	genome.wustl.edu	37	2	152567047	152567047	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	152567047	152567047	T	-	DEL	NEB	ENST00000397345	human	ensembl	74_37	-1	known	frame_shift_del	c.828	p.K276fs	1.000	pfam_Nebulin_35r-motif,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091				44	0	0	30	11	26.8293
PLA2R1	0	genome.wustl.edu	37	2	160806194	160806195	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	160806194	160806195	-	A	INS	PLA2R1	ENST00000283243	human	ensembl	74_37	-1	known	frame_shift_ins	c.3634_3633	p.A1211fs	0.999:0.999	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin	-	no_errors	PLA2R1	HGNC	ENSG00000153246				78	0	0	52	11	17.4603
GRB14	0	genome.wustl.edu	37	2	165365288	165365288	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	165365288	165365288	T	-	DEL	GRB14	ENST00000263915	human	ensembl	74_37	-1	known	frame_shift_del	c.891	p.K297fs	0.015	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_BPS-dom,pfam_SH2,pfam_Ras-assoc,pfam_Pleckstrin_homology,smart_Ras-assoc,smart_Pleckstrin_homology,smart_SH2,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SH2,prints_SH2	-	no_errors	GRB14	HGNC	ENSG00000115290				130	0	0	132	10	7.04225
COBLL1	0	genome.wustl.edu	37	2	165551296	165551296	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	165551296	165551296	A	-	DEL	COBLL1	ENST00000194871	human	ensembl	74_37	-1	known	frame_shift_del	c.2921	p.L974fs	0.972	NULL	pfam_Cordon-bleu_ubiquitin_domain,pfscan_WH2_dom	-	no_errors	COBLL1	HGNC	ENSG00000082438				52	0	0	17	12	41.3793
LRP2	0	genome.wustl.edu	37	2	169997025	169997025	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	169997025	169997025	G	-	DEL	LRP2	ENST00000263816	human	ensembl	74_37	-1	known	frame_shift_del	c.13139	p.P4380fs	1.000	superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479				75	0	0	42	8	16
DYNC1I2	0	genome.wustl.edu	37	2	172549339	172549339	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	172549339	172549339	A	-	DEL	DYNC1I2	ENST00000397119	human	ensembl	74_37	+1	known	frame_shift_del	c.161	p.R57fs	1.000	NULL	pfam_Dynein_IC_1/2,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DYNC1I2	HGNC	ENSG00000077380				56	0	0	43	8	15.6863
SMC6	0	genome.wustl.edu	37	2	17898126	17898126	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	17898126	17898126	T	-	DEL	SMC6	ENST00000381272	human	ensembl	74_37	-1	known	frame_shift_del	c.1306	p.I436fs	1.000	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	SMC6	HGNC	ENSG00000163029				53	0	0	52	11	17.4603
FKBP7	0	genome.wustl.edu	37	2	179330469	179330471	+	RNA	DEL	AAA	AAA	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	179330469	179330471	AAA	-	DEL	FKBP7	ENST00000464248	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000:0.000	-	-	-	no_errors	FKBP7	HGNC	ENSG00000079150				25	0	0	28	8	22.2222
ENSG00000271011	0	genome.wustl.edu	37	2	179442293	179442293	+	RNA	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	179442293	179442293	A	-	DEL	ENSG00000271011	ENST00000604215	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.038	-	-	-	no_errors	RP11-171I2.5	Clone_based_vega_gene	ENSG00000271011				31	0	0	21	9	30
TTN	0	genome.wustl.edu	37	2	179450022	179450022	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	179450022	179450022	T	-	DEL	TTN	ENST00000342992	human	ensembl	74_37	-1	known	frame_shift_del	c.56745	p.K18915fs	0.997	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				180	0	0	163	35	17.6768
CCDC141	0	genome.wustl.edu	37	2	179720245	179720245	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	179720245	179720245	T	-	DEL	CCDC141	ENST00000420890	human	ensembl	74_37	-1	known	frame_shift_del	c.2889	p.V964fs	0.095	NULL	pfam_Ig_I-set,pfam_Spectrin_repeat,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	CCDC141	HGNC	ENSG00000163492				59	0	0	51	9	15
PMS1	0	genome.wustl.edu	37	2	190670540	190670540	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	190670540	190670540	A	-	DEL	PMS1	ENST00000409985	human	ensembl	74_37	+1	novel	frame_shift_del	c.478	p.K163fs	0.001	NULL	pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd	-	no_errors	PMS1	HGNC	ENSG00000064933				24	0	0	9	9	50
PMS1	0	genome.wustl.edu	37	2	190682810	190682810	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	190682810	190682810	A	-	DEL	PMS1	ENST00000441310	human	ensembl	74_37	+1	known	frame_shift_del	c.486	p.K164fs	0.992	superfamily_HATPase_ATP-bd,tigrfam_DNA_mismatch_repair_N	pfam_DNA_mismatch_repair_C,pfam_HMG_box_dom,pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom,tigrfam_DNA_mismatch_repair_N	-	no_errors	PMS1	HGNC	ENSG00000064933				27	0	0	41	5	10.8696
DNAH7	0	genome.wustl.edu	37	2	196788374	196788374	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	196788374	196788374	T	-	DEL	DNAH7	ENST00000312428	human	ensembl	74_37	-1	known	frame_shift_del	c.3770	p.N1257fs	0.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_hand_dom	-	no_errors	DNAH7	HGNC	ENSG00000118997				95	0	0	99	8	7.47664
CCDC150	0	genome.wustl.edu	37	2	197584401	197584401	+	RNA	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	197584401	197584401	T	-	DEL	CCDC150	ENST00000461825	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.003	-	-	-	no_errors	CCDC150	HGNC	ENSG00000144395				48	0	0	28	12	30
CCDC150	0	genome.wustl.edu	37	2	197584490	197584491	+	RNA	DEL	AA	AA	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	197584490	197584491	AA	-	DEL	CCDC150	ENST00000461825	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	CCDC150	HGNC	ENSG00000144395				8	0	0	7	7	50
ENSG00000257045	0	genome.wustl.edu	37	2	200193649	200193649	+	RNA	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	200193649	200193649	A	-	DEL	ENSG00000257045	ENST00000489557	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-486F17.1	Clone_based_vega_gene	ENSG00000257045				27	0	0	17	8	32
SUMO1	0	genome.wustl.edu	37	2	203096349	203096349	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	203096349	203096349	A	-	DEL	SUMO1	ENST00000409627	human	ensembl	74_37	-1	known	frame_shift_del	c.119	p.L40fs	0.011	NULL	NULL	-	no_errors	SUMO1	HGNC	ENSG00000116030				19	0	0	12	6	33.3333
NOP58	0	genome.wustl.edu	37	2	203168133	203168133	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	203168133	203168133	A	-	DEL	NOP58	ENST00000264279	human	ensembl	74_37	+1	known	frame_shift_del	c.1564	p.K524fs	1.000	NULL	pfam_Nop_dom,pfam_NOSIC,pfam_NOP5_N,smart_NOSIC	-	no_errors	NOP58	HGNC	ENSG00000055044				49	0	0	50	16	24.2424
ZDBF2	0	genome.wustl.edu	37	2	207174428	207174428	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	207174428	207174428	A	-	DEL	ZDBF2	ENST00000374423	human	ensembl	74_37	+1	known	frame_shift_del	c.5176	p.K1728fs	0.000	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186				77	0	0	71	21	22.8261
ZDBF2	0	genome.wustl.edu	37	2	207174487	207174487	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	207174487	207174487	T	-	DEL	ZDBF2	ENST00000374423	human	ensembl	74_37	+1	known	frame_shift_del	c.5235	p.F1746fs	0.004	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186				109	0	0	89	6	6.31579
MDH1B	0	genome.wustl.edu	37	2	207605795	207605795	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	207605795	207605795	T	-	DEL	MDH1B	ENST00000374412	human	ensembl	74_37	-1	known	frame_shift_del	c.1442	p.N481fs	0.066	NULL	pfam_Lactate/malate_DH_C,superfamily_Lactate_DH/Glyco_Ohase_4_C	-	no_errors	MDH1B	HGNC	ENSG00000138400				74	0	0	57	14	19.7183
KLF7	0	genome.wustl.edu	37	2	207989028	207989028	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	207989028	207989028	G	-	DEL	KLF7	ENST00000309446	human	ensembl	74_37	-1	known	frame_shift_del	c.203	p.P68fs	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF7	HGNC	ENSG00000118263				46	0	0	29	9	23.6842
CCNYL1	0	genome.wustl.edu	37	2	208605430	208605433	+	Frame_Shift_Del	DEL	AGTA	AGTA	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	AGTA	AGTA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	208605430	208605433	AGTA	-	DEL	CCNYL1	ENST00000295414	human	ensembl	74_37	+1	known	frame_shift_del	c.519	p.R174fs	1.000	pfam_Cyclin_N,superfamily_Cyclin-like,pirsf_Cyclin_Y	pfam_Cyclin_N,pfam_Cyclin_PHO80-like,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_Y	-	no_errors	CCNYL1	HGNC	ENSG00000163249				62	0	0	65	4	5.7971
XRCC5	0	genome.wustl.edu	37	2	217024813	217024813	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	217024813	217024813	A	-	DEL	XRCC5	ENST00000392132	human	ensembl	74_37	+1	known	frame_shift_del	c.1693	p.K566fs	1.000	pfam_Ku_C,superfamily_Ku_PK_bind	pfam_Ku_N,pfam_Ku_PK_bind,pfam_Ku70/Ku80_beta-barrel_dom,pfam_Ku_C,superfamily_SPOC_like_C_dom,superfamily_Ku_PK_bind,smart_VWF_A,smart_Ku70/Ku80_beta-barrel_dom	-	no_errors	XRCC5	HGNC	ENSG00000079246				154	0	0	135	10	6.89655
CCDC108	0	genome.wustl.edu	37	2	219892999	219892999	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	219892999	219892999	G	-	DEL	CCDC108	ENST00000341552	human	ensembl	74_37	-1	known	frame_shift_del	c.1775	p.P592fs	0.993	NULL	superfamily_PapD-like,pfscan_MSP_dom	-	no_errors	CCDC108	HGNC	ENSG00000181378				36	0	0	38	10	20.8333
INHA	0	genome.wustl.edu	37	2	220439700	220439701	+	Frame_Shift_Ins	INS	-	-	CT			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	220439700	220439701	-	CT	INS	INHA	ENST00000243786	human	ensembl	74_37	+1	known	frame_shift_ins	c.553_554	p.L189fs	0.345:0.408	pirsf_Inhibin_asu_subgr,prints_Inhibin_asu	pfam_TGF-b_C,smart_TGF-b_C,pirsf_Inhibin_asu_subgr,prints_Inhibin_asu	-	no_errors	INHA	HGNC	ENSG00000123999				86	0	0	58	14	19.4444
PAX3	0	genome.wustl.edu	37	2	223086020	223086020	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	223086020	223086020	C	-	DEL	PAX3	ENST00000392069	human	ensembl	74_37	-1	known	frame_shift_del	c.879	p.F294fs	0.803	NULL	pfam_Paired_dom,pfam_Pax7,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Paired_dom,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX3	HGNC	ENSG00000135903				192	0	0	151	22	12.7168
HTR2B	0	genome.wustl.edu	37	2	231973745	231973745	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	231973745	231973745	T	-	DEL	HTR2B	ENST00000258400	human	ensembl	74_37	-1	known	frame_shift_del	c.932	p.K311fs	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_5HT2B_rcpt,prints_GPCR_Rhodpsn,prints_5HT_rcpt	-	no_errors	HTR2B	HGNC	ENSG00000135914				182	0	0	158	46	22.549
UGT1A6	0	genome.wustl.edu	37	2	234602262	234602262	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	234602262	234602262	T	-	DEL	UGT1A6	ENST00000305139	human	ensembl	74_37	+1	known	frame_shift_del	c.612	p.S206fs	0.002	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A6	HGNC	ENSG00000167165				194	0	0	147	48	24.6154
UGT1A4	0	genome.wustl.edu	37	2	234627977	234627977	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	234627977	234627977	T	-	DEL	UGT1A4	ENST00000373409	human	ensembl	74_37	+1	known	frame_shift_del	c.511	p.W173fs	0.388	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A4	HGNC	ENSG00000244474				201	0	0	185	31	14.3519
NDUFA10	0	genome.wustl.edu	37	2	240946781	240946781	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	240946781	240946781	T	-	DEL	NDUFA10	ENST00000252711	human	ensembl	74_37	-1	known	frame_shift_del	c.756	p.K252fs	0.535	pfam_Deoxynucleoside_kinase,superfamily_P-loop_NTPase,pirsf_NADH_UbQ_OxRdtase_42KD_su	pfam_Deoxynucleoside_kinase,superfamily_P-loop_NTPase,pirsf_NADH_UbQ_OxRdtase_42KD_su	-	no_errors	NDUFA10	HGNC	ENSG00000130414				47	0	0	34	7	17.0732
BIRC6	0	genome.wustl.edu	37	2	32836528	32836529	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	32836528	32836529	-	T	INS	BIRC6	ENST00000421745	human	ensembl	74_37	+1	known	frame_shift_ins	c.14273_14274	p.Y4760fs	1.000:1.000	NULL	pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2	-	no_errors	BIRC6	HGNC	ENSG00000115760				85	0	0	56	17	23.2877
CEBPZ	0	genome.wustl.edu	37	2	37443454	37443461	+	Frame_Shift_Del	DEL	CATACCTT	CATACCTT	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	CATACCTT	CATACCTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	37443454	37443461	CATACCTT	-	DEL	CEBPZ	ENST00000234170	human	ensembl	74_37	-1	known	frame_shift_del	c.2316_2309	p.K770fs	0.001:0.000:0.956:1.000:1.000:1.000:1.000:1.000	superfamily_ARM-type_fold	pfam_CCAAT-binding_factor,superfamily_ARM-type_fold	-	no_errors	CEBPZ	HGNC	ENSG00000115816				113	0	0	58	13	18.3099
CHAC2	0	genome.wustl.edu	37	2	53995031	53995031	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	53995031	53995031	T	-	DEL	CHAC2	ENST00000295304	human	ensembl	74_37	+1	known	frame_shift_del	c.8	p.F4fs	1.000	pfam_ChaC	pfam_ChaC	-	no_errors	CHAC2	HGNC	ENSG00000143942				12	0	0	8	3	27.2727
PSME4	0	genome.wustl.edu	37	2	54093345	54093345	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	54093345	54093345	T	-	DEL	PSME4	ENST00000404125	human	ensembl	74_37	-1	known	frame_shift_del	c.5413	p.T1805fs	1.000	pfam_DUF3437,superfamily_ARM-type_fold	pfam_DUF3437,superfamily_ARM-type_fold	-	no_errors	PSME4	HGNC	ENSG00000068878				144	0	0	125	31	19.8718
MTIF2	0	genome.wustl.edu	37	2	55489457	55489457	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	55489457	55489457	T	-	DEL	MTIF2	ENST00000263629	human	ensembl	74_37	-1	known	frame_shift_del	c.326	p.N109fs	0.998	NULL	pfam_EF_GTP-bd_dom,pfam_TIF_IF2_dom3,pfam_Transl_elong_EFTu/EF1A_2,pfam_MIRO-like,pfam_GTP_binding_domain,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase,superfamily_TIF_IF2_dom3,superfamily_Transl_B-barrel,tigrfam_Small_GTP-bd_dom	-	no_errors	MTIF2	HGNC	ENSG00000085760				130	0	0	82	25	23.3645
PUS10	0	genome.wustl.edu	37	2	61198669	61198669	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	61198669	61198669	T	-	DEL	PUS10	ENST00000316752	human	ensembl	74_37	-1	known	frame_shift_del	c.492	p.K164fs	1.000	NULL	superfamily_PsdUridine_synth_cat_dom	-	no_errors	PUS10	HGNC	ENSG00000162927				276	0	0	207	53	20.3846
UGP2	0	genome.wustl.edu	37	2	64069278	64069279	+	RNA	DEL	AA	AA	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	64069278	64069279	AA	-	DEL	UGP2	ENST00000484056	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.271:0.359	-	-	-	no_errors	UGP2	HGNC	ENSG00000169764				75	0	0	63	22	25.8824
ETAA1	0	genome.wustl.edu	37	2	67629972	67629972	+	RNA	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	67629972	67629972	T	-	DEL	ETAA1	ENST00000462772	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ETAA1	HGNC	ENSG00000143971				119	0	0	74	24	24.4898
ATP6V1B1	0	genome.wustl.edu	37	2	71191573	71191573	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	71191573	71191573	C	-	DEL	ATP6V1B1	ENST00000234396	human	ensembl	74_37	+1	known	frame_shift_del	c.1149	p.I386fs	0.999	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,superfamily_P-loop_NTPase,tigrfam_ATPase_V1-cplx_bsu	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,pfam_ATPase_F1/V1/A1-cplx_a/bsu_C,pfam_ATPase_F1_a/bsu_N,superfamily_P-loop_NTPase,superfamily_ATPase_F1_a/bsu_N,superfamily_ATPase_F1/V1/A1-cplx_a/bsu_C,tigrfam_ATPase_V1-cplx_bsu	-	no_errors	ATP6V1B1	HGNC	ENSG00000116039				87	0	0	50	9	15.2542
DUSP11	0	genome.wustl.edu	37	2	73993684	73993685	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	73993684	73993685	-	A	INS	DUSP11	ENST00000272444	human	ensembl	74_37	-1	known	frame_shift_ins	c.796_795	p.E265fs	0.302:0.323	NULL	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase	-	no_errors	DUSP11	HGNC	ENSG00000144048				130	0	0	108	16	12.9032
DCTN1	0	genome.wustl.edu	37	2	74593377	74593377	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	74593377	74593377	G	-	DEL	DCTN1	ENST00000361874	human	ensembl	74_37	-1	known	frame_shift_del	c.2754	p.S919fs	0.997	superfamily_P-loop_NTPase	pfam_Dynactin,pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_Polyketide_synth_docking,superfamily_P-loop_NTPase,pfscan_CAP-Gly_domain	-	no_errors	DCTN1	HGNC	ENSG00000204843				124	0	0	63	14	18.1818
RNF103	0	genome.wustl.edu	37	2	86831015	86831015	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	86831015	86831015	T	-	DEL	RNF103	ENST00000237455	human	ensembl	74_37	-1	known	frame_shift_del	c.2009	p.K670fs	1.000	NULL	pfam_Znf_C3HC4_RING-type,superfamily_Thioredoxin-like_fold,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF103	HGNC	ENSG00000239305				110	0	0	91	12	11.6505
ZNF514	0	genome.wustl.edu	37	2	95815035	95815035	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	95815035	95815035	T	-	DEL	ZNF514	ENST00000295208	human	ensembl	74_37	-1	known	frame_shift_del	c.1195	p.T399fs	0.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF514	HGNC	ENSG00000144026				122	1	0.813008	106	25	19.084
FAHD2CP	0	genome.wustl.edu	37	2	96687157	96687157	+	RNA	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	96687157	96687157	C	-	DEL	FAHD2CP	ENST00000443258	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	FAHD2CP	HGNC	ENSG00000231584				15	0	0	11	3	21.4286
TAF1B	0	genome.wustl.edu	37	2	9989571	9989572	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	9989571	9989572	AA	-	DEL	TAF1B	ENST00000263663	human	ensembl	74_37	+1	known	frame_shift_del	c.187_188	p.N66fs	0.991:0.950	NULL	pfam_TF_Rrn7	-	no_errors	TAF1B	HGNC	ENSG00000115750				20	0	0	21	5	19.2308
EIF5B	0	genome.wustl.edu	37	2	99977650	99977650	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	99977650	99977650	A	-	DEL	EIF5B	ENST00000289371	human	ensembl	74_37	+1	known	frame_shift_del	c.286	p.K98fs	0.998	NULL	pfam_EF_GTP-bd_dom,pfam_TIF_IF2_dom3,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Transl_B-barrel,superfamily_TIF_IF2_dom3,prints_EF_GTP-bd_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	EIF5B	HGNC	ENSG00000158417				139	0	0	108	27	20
EIF5B	0	genome.wustl.edu	37	2	99977965	99977965	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	2	99977965	99977965	A	-	DEL	EIF5B	ENST00000289371	human	ensembl	74_37	+1	known	frame_shift_del	c.601	p.N203fs	1.000	NULL	pfam_EF_GTP-bd_dom,pfam_TIF_IF2_dom3,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Transl_B-barrel,superfamily_TIF_IF2_dom3,prints_EF_GTP-bd_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	EIF5B	HGNC	ENSG00000158417				102	0	0	90	9	9.09091
CD93	0	genome.wustl.edu	37	20	23065523	23065523	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	23065523	23065523	C	-	DEL	CD93	ENST00000246006	human	ensembl	74_37	-1	known	frame_shift_del	c.1307	p.G436fs	0.000	pirsf_CD93/CD141,pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom	pirsf_CD93/CD141,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_MFS_dom_general_subst_transpt,smart_C-type_lectin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_C-type_lectin	-	no_errors	CD93	HGNC	ENSG00000125810				57	0	0	54	5	8.47458
GINS1	0	genome.wustl.edu	37	20	25422397	25422397	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	25422397	25422397	A	-	DEL	GINS1	ENST00000262460	human	ensembl	74_37	+1	known	frame_shift_del	c.507	p.N172fs	0.232	NULL	NULL	-	no_errors	GINS1	HGNC	ENSG00000101003				81	0	0	97	13	11.8182
ZNF337	0	genome.wustl.edu	37	20	25656373	25656374	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	25656373	25656374	-	A	INS	ZNF337	ENST00000252979	human	ensembl	74_37	-1	known	frame_shift_ins	c.1551_1550	p.C518fs	0.087:0.007	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF337	HGNC	ENSG00000130684				141	0	0	166	11	6.21469
DEFB118	0	genome.wustl.edu	37	20	29960672	29960672	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	29960672	29960672	A	-	DEL	DEFB118	ENST00000253381	human	ensembl	74_37	+1	known	frame_shift_del	c.71	p.K26fs	0.000	NULL	NULL	-	no_errors	DEFB118	HGNC	ENSG00000131068				62	0	0	73	11	13.0952
HM13	0	genome.wustl.edu	37	20	30142485	30142486	+	RNA	DEL	AA	AA	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	30142485	30142486	AA	-	DEL	HM13	ENST00000474466	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.172:0.159	-	-	-	no_errors	HM13	HGNC	ENSG00000101294				17	0	0	21	17	44.7368
EPB41L1	0	genome.wustl.edu	37	20	34797730	34797730	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	34797730	34797730	G	-	DEL	EPB41L1	ENST00000338074	human	ensembl	74_37	+1	known	frame_shift_del	c.1989	p.A665fs	0.990	pirsf_Band_41_protein	pfam_Band_4.1_C,pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM_central,pfam_SAB_dom,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pirsf_Band_41_protein,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L1	HGNC	ENSG00000088367				23	0	0	33	8	19.5122
DLGAP4	0	genome.wustl.edu	37	20	35071131	35071131	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	35071131	35071131	T	-	DEL	DLGAP4	ENST00000339266	human	ensembl	74_37	+1	known	frame_shift_del	c.1358	p.F454fs	0.998	NULL	pfam_GKAP	-	no_errors	DLGAP4	HGNC	ENSG00000080845				549	0	0	645	36	5.28634
MROH8	0	genome.wustl.edu	37	20	35748936	35748937	+	Frame_Shift_Del	DEL	TA	TA	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	TA	TA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	35748936	35748937	TA	-	DEL	MROH8	ENST00000400441	human	ensembl	74_37	-1	known	frame_shift_del	c.2200_2199	p.H733fs	0.999:1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	MROH8	HGNC	ENSG00000101353				55	0	0	51	13	20.3125
RALGAPB	0	genome.wustl.edu	37	20	37146233	37146233	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	37146233	37146233	C	-	DEL	RALGAPB	ENST00000262879	human	ensembl	74_37	+1	known	frame_shift_del	c.1136	p.P381fs	1.000	NULL	superfamily_ARM-type_fold,pfscan_Rap_GAP_dom	-	no_errors	RALGAPB	HGNC	ENSG00000170471				116	0	0	174	21	10.7692
LPIN3	0	genome.wustl.edu	37	20	39977798	39977799	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	39977798	39977799	-	C	INS	LPIN3	ENST00000373257	human	ensembl	74_37	+1	known	frame_shift_ins	c.624_625	p.Q210fs	0.488:0.000	NULL	pfam_LNS2,pfam_Lipin_N,superfamily_HAD-like_dom,smart_LNS2	-	no_errors	LPIN3	HGNC	ENSG00000132793				116	0	0	93	7	7
EMILIN3	0	genome.wustl.edu	37	20	39992288	39992288	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	39992288	39992288	G	-	DEL	EMILIN3	ENST00000332312	human	ensembl	74_37	-1	known	frame_shift_del	c.504	p.S169fs	0.800	NULL	pfam_EMI_domain,pfscan_EMI_domain	-	no_errors	EMILIN3	HGNC	ENSG00000183798				28	0	0	26	6	18.75
PTPRT	0	genome.wustl.edu	37	20	40739003	40739003	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	40739003	40739003	G	-	DEL	PTPRT	ENST00000373198	human	ensembl	74_37	-1	known	frame_shift_del	c.3281	p.P1094fs	0.991	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRT	HGNC	ENSG00000196090				41	0	0	35	5	12.5
CTSA	0	genome.wustl.edu	37	20	44523668	44523668	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	44523668	44523668	C	-	DEL	CTSA	ENST00000372484	human	ensembl	74_37	+1	known	frame_shift_del	c.1038	p.C349fs	1.000	pfam_Peptidase_S10	pfam_Peptidase_S10,prints_Peptidase_S10	-	no_errors	CTSA	HGNC	ENSG00000064601				37	0	0	29	3	9.375
ZNF334	0	genome.wustl.edu	37	20	45130769	45130769	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	45130769	45130769	T	-	DEL	ZNF334	ENST00000347606	human	ensembl	74_37	-1	known	frame_shift_del	c.1209	p.K403fs	0.999	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF334	HGNC	ENSG00000198185				174	0	0	209	31	12.9167
DDX27	0	genome.wustl.edu	37	20	47858504	47858504	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	47858504	47858504	A	-	DEL	DDX27	ENST00000371764	human	ensembl	74_37	+1	known	frame_shift_del	c.2065	p.K691fs	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX27	HGNC	ENSG00000124228				121	0	0	137	43	23.8889
DDX27	0	genome.wustl.edu	37	20	47860271	47860271	+	RNA	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	47860271	47860271	T	-	DEL	DDX27	ENST00000471144	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	DDX27	HGNC	ENSG00000124228				56	0	0	68	8	10.5263
DDX27	0	genome.wustl.edu	37	20	47860465	47860465	+	RNA	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	47860465	47860465	A	-	DEL	DDX27	ENST00000471144	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	DDX27	HGNC	ENSG00000124228				22	0	0	15	5	25
ADNP	0	genome.wustl.edu	37	20	49520470	49520470	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	49520470	49520470	T	-	DEL	ADNP	ENST00000349014	human	ensembl	74_37	-1	known	frame_shift_del	c.64	p.I22fs	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ADNP	HGNC	ENSG00000101126				56	0	0	55	9	14.0625
ATP9A	0	genome.wustl.edu	37	20	50312633	50312634	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	50312633	50312634	-	T	INS	ATP9A	ENST00000338821	human	ensembl	74_37	-1	known	frame_shift_ins	c.546_545	p.N182fs	0.995:1.000	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP9A	HGNC	ENSG00000054793				55	0	0	66	8	10.8108
C20orf85	0	genome.wustl.edu	37	20	56735727	56735727	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	56735727	56735727	C	-	DEL	C20orf85	ENST00000371168	human	ensembl	74_37	+1	known	frame_shift_del	c.263	p.P90fs	0.687	NULL	NULL	-	no_errors	C20orf85	HGNC	ENSG00000124237				44	0	0	55	8	12.6984
OSBPL2	0	genome.wustl.edu	37	20	60854258	60854258	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	20	60854258	60854258	C	-	DEL	OSBPL2	ENST00000313733	human	ensembl	74_37	+1	known	frame_shift_del	c.537	p.I182fs	1.000	pfam_Oxysterol-bd	pfam_Oxysterol-bd	-	no_errors	OSBPL2	HGNC	ENSG00000130703				99	0	0	98	17	14.7826
RWDD2B	0	genome.wustl.edu	37	21	30378685	30378685	+	RNA	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	21	30378685	30378685	A	-	DEL	RWDD2B	ENST00000286777	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RWDD2B	HGNC	ENSG00000156253				16	0	0	9	5	35.7143
FLJ45139	0	genome.wustl.edu	37	21	40250362	40250363	+	RNA	DEL	AA	AA	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	21	40250362	40250363	AA	-	DEL	FLJ45139	ENST00000380931	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001:0.001	-	-	-	no_errors	AF064858.6	Clone_based_vega_gene	ENSG00000205622				29	0	0	11	5	31.25
LCA5L	0	genome.wustl.edu	37	21	40795389	40795389	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	21	40795389	40795389	T	-	DEL	LCA5L	ENST00000288350	human	ensembl	74_37	-1	known	frame_shift_del	c.350	p.K117fs	0.985	NULL	NULL	-	no_errors	LCA5L	HGNC	ENSG00000157578				144	0	0	94	8	7.84314
CBS	0	genome.wustl.edu	37	21	44492285	44492285	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	21	44492285	44492285	G	-	DEL	CBS	ENST00000398168	human	ensembl	74_37	-1	known	frame_shift_del	c.19	p.Q7fs	0.000	NULL	pfam_Trp_syn_b_sub_like_PLP_eny_SF,pfam_CBS_dom,superfamily_Trp_syn_b_sub_like_PLP_eny_SF,smart_CBS_dom,tigrfam_Cysta_beta_synth	-	no_errors	CBS	HGNC	ENSG00000160200				19	0	0	3	2	40
KRTAP10-9	0	genome.wustl.edu	37	21	46047615	46047615	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	21	46047615	46047615	C	-	DEL	KRTAP10-9	ENST00000397911	human	ensembl	74_37	+1	known	frame_shift_del	c.527	p.C178fs	0.035	NULL	NULL	-	no_errors	KRTAP10-9	HGNC	ENSG00000221837				369	0	0	206	56	21.374
MCM3AP-AS1	0	genome.wustl.edu	37	21	47662900	47662901	+	RNA	DEL	AA	AA	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	21	47662900	47662901	AA	-	DEL	MCM3AP-AS1	ENST00000421927	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	MCM3AP-AS1	HGNC	ENSG00000215424				73	0	0	56	5	8.19672
PI4KA	0	genome.wustl.edu	37	22	21172812	21172812	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	21172812	21172812	G	-	DEL	PI4KA	ENST00000255882	human	ensembl	74_37	-1	known	frame_shift_del	c.815	p.P272fs	1.000	superfamily_ARM-type_fold	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PI4KA	HGNC	ENSG00000241973				30	0	0	30	7	18.9189
SMARCB1	0	genome.wustl.edu	37	22	24175857	24175859	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	24175857	24175859	AGA	-	DEL	SMARCB1	ENST00000263121	human	ensembl	74_37	+1	known	in_frame_del	c.1085_1087	p.K364in_frame_del	1.000:1.000:1.000	pfam_SNF5,pirsf_SWI_SNF_chromatin_remodel_cplx	pfam_SNF5,pirsf_SWI_SNF_chromatin_remodel_cplx	-	no_errors	SMARCB1	HGNC	ENSG00000099956				96	0	0	54	14	20.5882
SPECC1L	0	genome.wustl.edu	37	22	24718805	24718806	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	24718805	24718806	AG	-	DEL	SPECC1L	ENST00000314328	human	ensembl	74_37	+1	known	frame_shift_del	c.1857_1858	p.E620fs	0.275:1.000	NULL	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_bHLH_dom,smart_CH-domain,pfscan_CH-domain	-	no_errors	SPECC1L	HGNC	ENSG00000100014				134	0	0	98	33	25.1908
TUG1	0	genome.wustl.edu	37	22	31367602	31367602	+	RNA	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	31367602	31367602	T	-	DEL	TUG1	ENST00000519077	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	TUG1	HGNC	ENSG00000253352				9	0	0	7	7	50
DDX17	0	genome.wustl.edu	37	22	38895454	38895455	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	38895454	38895455	-	C	INS	DDX17	ENST00000396821	human	ensembl	74_37	-1	known	frame_shift_ins	c.489_488	p.D164fs	0.978:0.996	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX17	HGNC	ENSG00000100201				126	0	0	117	23	16.4286
NAGA	0	genome.wustl.edu	37	22	42458950	42458950	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	42458950	42458950	G	-	DEL	NAGA	ENST00000396398	human	ensembl	74_37	-1	known	frame_shift_del	c.838	p.L280fs	1.000	superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_27	pfam_Glyco_hydro_GHD,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_27	-	no_errors	NAGA	HGNC	ENSG00000198951				57	0	0	36	5	12.1951
ALG12	0	genome.wustl.edu	37	22	50303555	50303555	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	22	50303555	50303555	C	-	DEL	ALG12	ENST00000330817	human	ensembl	74_37	-1	known	frame_shift_del	c.651	p.I218fs	0.000	pfam_GPI_mannosylTrfase	pfam_GPI_mannosylTrfase	-	no_errors	ALG12	HGNC	ENSG00000182858				65	0	0	57	10	14.9254
GCSAM	0	genome.wustl.edu	37	3	111845872	111845873	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	111845872	111845873	-	T	INS	GCSAM	ENST00000308910	human	ensembl	74_37	-1	known	frame_shift_ins	c.152_151	p.I51fs	0.000:0.001	NULL	NULL	-	no_errors	GCSAM	HGNC	ENSG00000174500				51	0	0	47	9	16.0714
KIAA1407	0	genome.wustl.edu	37	3	113765535	113765535	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	113765535	113765535	A	-	DEL	KIAA1407	ENST00000295878	human	ensembl	74_37	-1	known	frame_shift_del	c.174	p.F58fs	0.024	NULL	NULL	-	no_errors	KIAA1407	HGNC	ENSG00000163617				54	0	0	36	11	23.4043
PARP14	0	genome.wustl.edu	37	3	122418640	122418640	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	122418640	122418640	A	-	DEL	PARP14	ENST00000474629	human	ensembl	74_37	+1	known	frame_shift_del	c.1239	p.N415fs	0.000	NULL	pfam_Macro_dom,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_WWE-dom,smart_Macro_dom,pfscan_Macro_dom,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP14	HGNC	ENSG00000173193				315	0	0	194	55	22.0884
PARP14	0	genome.wustl.edu	37	3	122433232	122433232	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	122433232	122433232	A	-	DEL	PARP14	ENST00000474629	human	ensembl	74_37	+1	known	frame_shift_del	c.3956	p.N1322fs	0.974	pfam_Macro_dom,smart_Macro_dom,pfscan_Macro_dom	pfam_Macro_dom,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_WWE-dom,smart_Macro_dom,pfscan_Macro_dom,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP14	HGNC	ENSG00000173193				66	0	0	60	11	15.493
PARP14	0	genome.wustl.edu	37	3	122437545	122437546	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	122437545	122437546	AG	-	DEL	PARP14	ENST00000474629	human	ensembl	74_37	+1	known	frame_shift_del	c.4547_4548	p.R1517fs	0.981:0.707	NULL	pfam_Macro_dom,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_WWE-dom,smart_Macro_dom,pfscan_Macro_dom,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP14	HGNC	ENSG00000173193				358	0	0	287	16	5.28053
ADCY5	0	genome.wustl.edu	37	3	123046535	123046535	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	123046535	123046535	C	-	DEL	ADCY5	ENST00000462833	human	ensembl	74_37	-1	known	frame_shift_del	c.1877	p.G626fs	1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY5	HGNC	ENSG00000173175				33	0	0	36	9	20
TRH	0	genome.wustl.edu	37	3	129695643	129695643	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	129695643	129695643	G	-	DEL	TRH	ENST00000302649	human	ensembl	74_37	+1	known	frame_shift_del	c.313	p.A107fs	0.490	pfam_TRH,pirsf_TRH	pfam_TRH,pirsf_TRH	-	no_errors	TRH	HGNC	ENSG00000170893				48	0	0	33	4	10.8108
ENSG00000273455	0	genome.wustl.edu	37	3	135806703	135806703	+	RNA	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	135806703	135806703	T	-	DEL	ENSG00000273455	ENST00000608883	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	RP11-305O4.3	Clone_based_vega_gene	ENSG00000273455				59	0	0	50	16	24.2424
SLC35G2	0	genome.wustl.edu	37	3	136573585	136573586	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	136573585	136573586	-	A	INS	SLC35G2	ENST00000393079	human	ensembl	74_37	+1	known	frame_shift_ins	c.283_284	p.N97fs	1.000:1.000	NULL	pfam_DMT	-	no_errors	SLC35G2	HGNC	ENSG00000168917				100	0	0	78	23	22.7723
CNTN6	0	genome.wustl.edu	37	3	1371501	1371501	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	1371501	1371501	A	-	DEL	CNTN6	ENST00000350110	human	ensembl	74_37	+1	known	frame_shift_del	c.1246	p.K418fs	0.992	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN6	HGNC	ENSG00000134115				132	0	0	88	19	17.757
PIK3CB	0	genome.wustl.edu	37	3	138433482	138433482	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	138433482	138433482	T	-	DEL	PIK3CB	ENST00000289153	human	ensembl	74_37	-1	known	frame_shift_del	c.1130	p.N377fs	0.995	pfam_PI3K_C2_dom,superfamily_C2_dom,smart_PI3K_C2_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_adapt-bd_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,superfamily_Kinase-like_dom,superfamily_C2_dom,superfamily_ARM-type_fold,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CB	HGNC	ENSG00000051382				207	0	0	181	55	23.3051
XRN1	0	genome.wustl.edu	37	3	142142409	142142409	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	142142409	142142409	T	-	DEL	XRN1	ENST00000264951	human	ensembl	74_37	-1	known	frame_shift_del	c.703	p.T235fs	0.869	pirsf_5_3_exoribonuclease_1	pfam_Put_53exo,pirsf_5_3_exoribonuclease_1	-	no_errors	XRN1	HGNC	ENSG00000114127				52	0	0	40	7	14.8936
SLC6A6	0	genome.wustl.edu	37	3	14513785	14513785	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	14513785	14513785	T	-	DEL	SLC6A6	ENST00000360861	human	ensembl	74_37	+1	known	frame_shift_del	c.1169	p.F392fs	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_taurine	-	no_errors	SLC6A6	HGNC	ENSG00000131389				109	0	0	102	6	5.55556
DHX36	0	genome.wustl.edu	37	3	154010423	154010423	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	154010423	154010423	A	-	DEL	DHX36	ENST00000496811	human	ensembl	74_37	-1	known	frame_shift_del	c.1731	p.F577fs	1.000	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX36	HGNC	ENSG00000174953				171	0	0	154	9	5.52147
EAF1-AS1	0	genome.wustl.edu	37	3	15480599	15480599	+	RNA	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	15480599	15480599	T	-	DEL	EAF1-AS1	ENST00000494875	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.925	-	-	-	no_errors	EAF1-AS1	HGNC	ENSG00000249786				51	0	0	23	11	32.3529
SLC33A1	0	genome.wustl.edu	37	3	155560396	155560396	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	155560396	155560396	A	-	DEL	SLC33A1	ENST00000359479	human	ensembl	74_37	-1	known	frame_shift_del	c.788	p.F263fs	1.000	superfamily_MFS_dom_general_subst_transpt,tigrfam_AmpG_permease/AT-1	superfamily_MFS_dom_general_subst_transpt,tigrfam_AmpG_permease/AT-1	-	no_errors	SLC33A1	HGNC	ENSG00000169359				34	0	0	28	9	24.3243
SMC4	0	genome.wustl.edu	37	3	160143940	160143940	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	160143940	160143940	A	-	DEL	SMC4	ENST00000344722	human	ensembl	74_37	+1	known	frame_shift_del	c.2557	p.K855fs	0.998	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase,superfamily_Chemotax_Me-accpt_rcpt_lig-bd	pfam_RecF/RecN/SMC_N,pfam_SMC_hinge,superfamily_P-loop_NTPase,superfamily_SMC_hinge,superfamily_Chemotax_Me-accpt_rcpt_lig-bd,superfamily_Prefoldin,smart_SMC_hinge	-	no_errors	SMC4	HGNC	ENSG00000113810				417	1	0.239234	366	66	15.2778
SERPINI2	0	genome.wustl.edu	37	3	167189546	167189546	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	167189546	167189546	T	-	DEL	SERPINI2	ENST00000264677	human	ensembl	74_37	-1	known	frame_shift_del	c.77	p.N26fs	0.002	pfam_Serpin_dom,superfamily_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINI2	HGNC	ENSG00000114204				237	0	0	186	48	20.5128
GPR160	0	genome.wustl.edu	37	3	169802468	169802469	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	169802468	169802469	-	A	INS	GPR160	ENST00000355897	human	ensembl	74_37	+1	known	frame_shift_ins	c.708_709	p.I238fs	0.000:0.030	pfscan_GPCR_Rhodpsn_7TM	pfscan_GPCR_Rhodpsn_7TM	-	no_errors	GPR160	HGNC	ENSG00000173890				78	0	0	58	13	18.3099
TNFSF10	0	genome.wustl.edu	37	3	172224303	172224303	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	172224303	172224303	A	-	DEL	TNFSF10	ENST00000241261	human	ensembl	74_37	-1	known	frame_shift_del	c.825	p.F275fs	0.424	pfam_TNF_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_TNF_dom,pirsf_TNF_ligand_10/11,pfscan_TNF_dom	pfam_TNF_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_TNF_dom,pirsf_TNF_ligand_10/11,pfscan_TNF_dom	-	no_errors	TNFSF10	HGNC	ENSG00000121858				89	0	0	67	10	12.987
MFN1	0	genome.wustl.edu	37	3	179069813	179069813	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	179069813	179069813	T	-	DEL	MFN1	ENST00000263969	human	ensembl	74_37	+1	known	frame_shift_del	c.238	p.F81fs	0.999	pfam_Dynamin_GTPase,superfamily_P-loop_NTPase	pfam_Fzo/mitofusin_HR2,pfam_Dynamin_GTPase,superfamily_P-loop_NTPase	-	no_errors	MFN1	HGNC	ENSG00000171109				240	0	0	162	33	16.9231
MRPL47	0	genome.wustl.edu	37	3	179320480	179320480	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	179320480	179320480	A	-	DEL	MRPL47	ENST00000476781	human	ensembl	74_37	-1	known	frame_shift_del	c.204	p.F68fs	1.000	pfam_Ribosomal_L47_mit	pfam_Ribosomal_L47_mit	-	no_errors	MRPL47	HGNC	ENSG00000136522				111	0	0	111	8	6.72269
USP13	0	genome.wustl.edu	37	3	179408081	179408081	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	179408081	179408081	T	-	DEL	USP13	ENST00000263966	human	ensembl	74_37	+1	known	frame_shift_del	c.347	p.L118fs	1.000	pirsf_Ubiquitinyl_hydrolase	pfam_Peptidase_C19/C67,pfam_UBA/Ts_N,pfam_Znf_UBP,superfamily_UBA-like,smart_Znf_UBP,smart_UBA/transl_elong_EF1B_N_euk,pirsf_Ubiquitinyl_hydrolase,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP13	HGNC	ENSG00000058056				98	0	0	72	18	20
FXR1	0	genome.wustl.edu	37	3	180652985	180652986	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	180652985	180652986	-	A	INS	FXR1	ENST00000357559	human	ensembl	74_37	+1	known	frame_shift_ins	c.164_165	p.E58fs	1.000:0.999	superfamily_NA-bd_OB-fold	pfam_Frag_X_MRP_fam,pfam_KH_dom_type_1,pfam_Agenet-like_dom,superfamily_NA-bd_OB-fold,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FXR1	HGNC	ENSG00000114416				69	0	0	49	7	12.5
DVL3	0	genome.wustl.edu	37	3	183888381	183888381	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	183888381	183888381	C	-	DEL	DVL3	ENST00000313143	human	ensembl	74_37	+1	known	frame_shift_del	c.1989	p.M666fs	0.996	pfam_Dishevelled_C-dom	pfam_Dishevelled_C-dom,pfam_DIX,pfam_Dishevelled_protein_dom,pfam_PDZ,pfam_DEP_dom,superfamily_PDZ,smart_DIX,smart_PDZ,smart_DEP_dom,pfscan_DEP_dom,pfscan_DIX,pfscan_PDZ,prints_Dishevelled_fam,prints_Dishevelled_3	-	no_errors	DVL3	HGNC	ENSG00000161202				11	0	0	9	2	18.1818
FETUB	0	genome.wustl.edu	37	3	186362544	186362544	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	186362544	186362544	A	-	DEL	FETUB	ENST00000265029	human	ensembl	74_37	+1	known	frame_shift_del	c.429	p.K146fs	0.854	NULL	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	FETUB	HGNC	ENSG00000090512				126	1	0.787402	82	25	23.3645
CCDC50	0	genome.wustl.edu	37	3	191093199	191093199	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	191093199	191093199	A	-	DEL	CCDC50	ENST00000392456	human	ensembl	74_37	+1	known	frame_shift_del	c.797	p.K267fs	0.009	NULL	NULL	-	no_errors	CCDC50	HGNC	ENSG00000152492				73	0	0	53	5	8.62069
MB21D2	0	genome.wustl.edu	37	3	192516280	192516280	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	192516280	192516280	T	-	DEL	MB21D2	ENST00000392452	human	ensembl	74_37	-1	known	frame_shift_del	c.1371	p.K457fs	1.000	NULL	pfam_Mab-21_dom	-	no_errors	MB21D2	HGNC	ENSG00000180611				116	0	0	86	19	18.0952
ACAP2	0	genome.wustl.edu	37	3	195013093	195013094	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	195013093	195013094	-	T	INS	ACAP2	ENST00000326793	human	ensembl	74_37	-1	known	frame_shift_ins	c.1854_1853	p.N618fs	0.992:1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ACAP2	HGNC	ENSG00000114331				151	0	0	132	7	5.03597
PPP1R2	0	genome.wustl.edu	37	3	195245976	195245976	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	195245976	195245976	T	-	DEL	PPP1R2	ENST00000328432	human	ensembl	74_37	-1	known	frame_shift_del	c.410	p.K137fs	1.000	pfam_PPI-2	pfam_PPI-2	-	no_errors	PPP1R2	HGNC	ENSG00000184203				60	0	0	58	13	18.3099
SGOL1	0	genome.wustl.edu	37	3	20212755	20212755	+	RNA	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	20212755	20212755	A	-	DEL	SGOL1	ENST00000460637	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	SGOL1	HGNC	ENSG00000129810				34	0	0	15	5	25
TRNT1	0	genome.wustl.edu	37	3	3189779	3189779	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	3189779	3189779	A	-	DEL	TRNT1	ENST00000251607	human	ensembl	74_37	+1	known	frame_shift_del	c.1246	p.S418fs	1.000	NULL	pfam_PolA_pol_head_dom	-	no_errors	TRNT1	HGNC	ENSG00000072756				94	0	0	55	18	24.6575
CLASP2	0	genome.wustl.edu	37	3	33602361	33602361	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	33602361	33602361	T	-	DEL	CLASP2	ENST00000399362	human	ensembl	74_37	-1	known	frame_shift_del	c.2890	p.M964fs	1.000	superfamily_ARM-type_fold	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	CLASP2	HGNC	ENSG00000163539				160	0	0	140	20	12.5
PDCD6IP	0	genome.wustl.edu	37	3	33870419	33870419	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	33870419	33870419	A	-	DEL	PDCD6IP	ENST00000457054	human	ensembl	74_37	+1	known	frame_shift_del	c.807	p.K270fs	0.991	pfam_BRO1_dom,pfscan_BRO1_dom	pfam_BRO1_dom,pfscan_BRO1_dom	-	no_errors	PDCD6IP	HGNC	ENSG00000170248				136	0	0	87	19	17.9245
LRRN1	0	genome.wustl.edu	37	3	3888320	3888320	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	3888320	3888320	A	-	DEL	LRRN1	ENST00000319331	human	ensembl	74_37	+1	known	frame_shift_del	c.1995	p.K667fs	0.663	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRRN1	HGNC	ENSG00000175928				83	0	0	59	7	10.6061
SEC22C	0	genome.wustl.edu	37	3	42610466	42610466	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	42610466	42610466	A	-	DEL	SEC22C	ENST00000264454	human	ensembl	74_37	-1	known	frame_shift_del	c.73	p.Y25fs	0.995	superfamily_Longin-like_dom,pfscan_Longin_dom	superfamily_Longin-like_dom,pfscan_Longin_dom	-	no_errors	SEC22C	HGNC	ENSG00000093183				46	0	0	42	9	17.6471
FYCO1	0	genome.wustl.edu	37	3	45965219	45965221	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	45965219	45965221	CTC	-	DEL	FYCO1	ENST00000535325	human	ensembl	74_37	-1	known	in_frame_del	c.4350_4348	p.E1450in_frame_del	1.000:1.000:1.000	superfamily_GOLD,pfscan_GOLD	pfam_Znf_FYVE,pfam_Run,superfamily_GOLD,superfamily_Znf_FYVE_PHD,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Znf_FYVE,pfscan_GOLD,pfscan_Run,pfscan_Znf_FYVE-rel	-	no_errors	FYCO1	HGNC	ENSG00000163820				135	0	0	92	23	20
SETD2	0	genome.wustl.edu	37	3	47161907	47161907	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	47161907	47161907	T	-	DEL	SETD2	ENST00000409792	human	ensembl	74_37	-1	known	frame_shift_del	c.4219	p.R1407fs	1.000	NULL	pfam_SRI,pfam_SET_dom,pfam_WW_dom,superfamily_WW_dom,superfamily_Ferritin-like_SF,smart_AWS,smart_SET_dom,smart_Post-SET_dom,smart_WW_dom,pfscan_AWS,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_WW_dom	-	no_errors	SETD2	HGNC	ENSG00000181555				70	0	0	36	10	21.7391
DAG1	0	genome.wustl.edu	37	3	49547840	49547840	+	RNA	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	49547840	49547840	T	-	DEL	DAG1	ENST00000479935	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.793	-	-	-	no_errors	DAG1	HGNC	ENSG00000173402				26	0	0	9	8	47.0588
DOCK3	0	genome.wustl.edu	37	3	51102018	51102018	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	51102018	51102018	G	-	DEL	DOCK3	ENST00000266037	human	ensembl	74_37	+1	known	frame_shift_del	c.455	p.G153fs	1.000	NULL	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538				97	0	0	80	11	12.0879
CACNA2D3	0	genome.wustl.edu	37	3	54596940	54596940	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	54596940	54596940	T	-	DEL	CACNA2D3	ENST00000288197	human	ensembl	74_37	+1	known	frame_shift_del	c.658	p.F221fs	1.000	pfam_VWA_N	pfam_VWA_N,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D3	HGNC	ENSG00000157445				41	0	0	32	7	17.9487
CCDC66	0	genome.wustl.edu	37	3	56649217	56649218	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	56649217	56649218	CA	-	DEL	CCDC66	ENST00000394672	human	ensembl	74_37	+1	known	frame_shift_del	c.1628_1629	p.Q544fs	1.000:0.876	NULL	NULL	-	no_errors	CCDC66	HGNC	ENSG00000180376				139	0	0	125	8	6.01504
ENSG00000244513	0	genome.wustl.edu	37	3	69105268	69105268	+	RNA	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	69105268	69105268	T	-	DEL	ENSG00000244513	ENST00000595925	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CTD-2013N24.2	Clone_based_vega_gene	ENSG00000244513				25	0	0	28	4	12.5
ROBO2	0	genome.wustl.edu	37	3	77684125	77684125	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	77684125	77684125	A	-	DEL	ROBO2	ENST00000461745	human	ensembl	74_37	+1	known	frame_shift_del	c.3865	p.K1290fs	0.976	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO2	HGNC	ENSG00000185008				103	0	0	93	13	12.2642
EPHA3	0	genome.wustl.edu	37	3	89468398	89468398	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	89468398	89468398	A	-	DEL	EPHA3	ENST00000336596	human	ensembl	74_37	+1	known	frame_shift_del	c.1932	p.E647fs	0.987	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA3	HGNC	ENSG00000044524				134	0	0	87	5	5.43478
FILIP1L	0	genome.wustl.edu	37	3	99568272	99568273	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	3	99568272	99568273	-	T	INS	FILIP1L	ENST00000354552	human	ensembl	74_37	-1	known	frame_shift_ins	c.2248_2247	p.L749fs	1.000:1.000	superfamily_Prefoldin	pfam_Cortactin-binding_p2_N,superfamily_Prefoldin,prints_Tropomyosin	-	no_errors	FILIP1L	HGNC	ENSG00000168386				186	0	0	175	10	5.40541
SLC2A9	0	genome.wustl.edu	37	4	10027510	10027510	+	RNA	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	10027510	10027510	A	-	DEL	SLC2A9	ENST00000509214	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SLC2A9	HGNC	ENSG00000109667				82	0	0	57	22	27.8481
ARSJ	0	genome.wustl.edu	37	4	114823494	114823494	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	114823494	114823494	T	-	DEL	ARSJ	ENST00000315366	human	ensembl	74_37	-1	known	frame_shift_del	c.1736	p.K579fs	0.628	NULL	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSJ	HGNC	ENSG00000180801				42	0	0	48	8	14.2857
MAD2L1	0	genome.wustl.edu	37	4	120981328	120981328	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	120981328	120981328	G	-	DEL	MAD2L1	ENST00000296509	human	ensembl	74_37	-1	known	frame_shift_del	c.563	p.T188fs	0.998	pfam_HORMA_DNA-bd,superfamily_HORMA_DNA-bd,pfscan_HORMA_DNA-bd	pfam_HORMA_DNA-bd,superfamily_HORMA_DNA-bd,pfscan_HORMA_DNA-bd	-	no_errors	MAD2L1	HGNC	ENSG00000164109				112	0	0	78	20	20.4082
TNIP3	0	genome.wustl.edu	37	4	122075764	122075764	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	122075764	122075764	T	-	DEL	TNIP3	ENST00000057513	human	ensembl	74_37	-1	known	frame_shift_del	c.434	p.N145fs	0.574	NULL	NULL	-	no_errors	TNIP3	HGNC	ENSG00000050730				59	0	0	39	12	23.5294
EXOSC9	0	genome.wustl.edu	37	4	122723894	122723894	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	122723894	122723894	T	-	DEL	EXOSC9	ENST00000379663	human	ensembl	74_37	+1	known	frame_shift_del	c.227	p.F78fs	1.000	pfam_ExoRNase_PH_dom1,superfamily_Ribosomal_S5_D2-typ_fold	pfam_ExoRNase_PH_dom1,pfam_ExoRNase_PH_dom2,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ExoRNase_PH_dom2	-	no_errors	EXOSC9	HGNC	ENSG00000123737				110	0	0	82	16	16.3265
LARP1B	0	genome.wustl.edu	37	4	129127673	129127674	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	129127673	129127674	-	A	INS	LARP1B	ENST00000326639	human	ensembl	74_37	+1	known	frame_shift_ins	c.2400_2401	p.D802fs	1.000:1.000	smart_DM15	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,smart_DM15,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP1B	HGNC	ENSG00000138709				79	0	0	66	5	7.04225
CLGN	0	genome.wustl.edu	37	4	141313402	141313402	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	141313402	141313402	T	-	DEL	CLGN	ENST00000325617	human	ensembl	74_37	-1	known	frame_shift_del	c.1622	p.K541fs	0.892	NULL	pfam_Calret/calnex,superfamily_ConA-like_lec_gl_sf,superfamily_Calreticulin/calnexin_P_dom,prints_Calret/calnex	-	no_errors	CLGN	HGNC	ENSG00000153132				264	0	0	211	47	18.2171
ZNF330	0	genome.wustl.edu	37	4	142143532	142143532	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	142143532	142143532	A	-	DEL	ZNF330	ENST00000262990	human	ensembl	74_37	+1	known	frame_shift_del	c.7	p.K5fs	1.000	pfam_NOA36	pfam_NOA36	-	no_errors	ZNF330	HGNC	ENSG00000109445				66	0	0	37	8	17.7778
LRBA	0	genome.wustl.edu	37	4	151520174	151520174	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	151520174	151520174	T	-	DEL	LRBA	ENST00000357115	human	ensembl	74_37	-1	known	frame_shift_del	c.6031	p.T2011fs	1.000	pfam_DUF1088	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl_sf,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom	-	no_errors	LRBA	HGNC	ENSG00000198589				122	0	0	101	8	7.33945
CC2D2A	0	genome.wustl.edu	37	4	15529197	15529197	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	15529197	15529197	T	-	DEL	CC2D2A	ENST00000413206	human	ensembl	74_37	+1	known	frame_shift_del	c.1277	p.L427fs	1.000	NULL	superfamily_C2_dom,smart_C2_dom	-	no_errors	CC2D2A	HGNC	ENSG00000048342				59	0	0	36	6	14.2857
MAP9	0	genome.wustl.edu	37	4	156294552	156294552	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	156294552	156294552	T	-	DEL	MAP9	ENST00000311277	human	ensembl	74_37	-1	known	frame_shift_del	c.217	p.M73fs	0.000	NULL	NULL	-	no_errors	MAP9	HGNC	ENSG00000164114				34	0	0	22	5	18.5185
TMA16	0	genome.wustl.edu	37	4	164428219	164428219	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	164428219	164428219	A	-	DEL	TMA16	ENST00000358572	human	ensembl	74_37	+1	known	frame_shift_del	c.38	p.V16fs	1.000	pfam_Tma16	pfam_Tma16	-	no_errors	TMA16	HGNC	ENSG00000198498				34	0	0	27	5	15.625
AADAT	0	genome.wustl.edu	37	4	170994374	170994375	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	170994374	170994375	-	T	INS	AADAT	ENST00000509167	human	ensembl	74_37	-1	known	frame_shift_ins	c.579_578	p.N193fs	0.004:0.012	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	-	no_errors	AADAT	HGNC	ENSG00000109576				129	0	0	125	9	6.71642
SEL1L3	0	genome.wustl.edu	37	4	25769175	25769176	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	25769175	25769176	AG	-	DEL	SEL1L3	ENST00000399878	human	ensembl	74_37	-1	known	frame_shift_del	c.2817_2816	p.S939fs	1.000:1.000	NULL	pfam_Sel1-like,superfamily_ConA-like_lec_gl_sf,smart_Sel1-like	-	no_errors	SEL1L3	HGNC	ENSG00000091490				40	0	0	33	4	10.8108
GRK4	0	genome.wustl.edu	37	4	3015469	3015470	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	3015469	3015470	-	A	INS	GRK4	ENST00000398052	human	ensembl	74_37	+1	known	frame_shift_ins	c.655_656	p.R222fs	1.000:1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RGS_dom,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Regulat_G_prot_signal_superfam,pfscan_Prot_kinase_dom,prints_GPCR_kinase	-	no_errors	GRK4	HGNC	ENSG00000125388				241	0	0	213	19	8.18966
GRK4	0	genome.wustl.edu	37	4	3040280	3040282	+	RNA	DEL	AAA	AAA	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	3040280	3040282	AAA	-	DEL	GRK4	ENST00000504308	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002:0.003:0.005	-	-	-	no_errors	GRK4	HGNC	ENSG00000125388				59	0	0	46	15	24.5902
RGS12	0	genome.wustl.edu	37	4	3319346	3319346	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	3319346	3319346	C	-	DEL	RGS12	ENST00000344733	human	ensembl	74_37	+1	known	frame_shift_del	c.1449	p.P485fs	0.000	NULL	pfam_Raf-like_ras-bd,pfam_RGS_dom,pfam_PDZ,pfam_GoLoco_motif,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_PTB/PI_dom,smart_Regulat_G_prot_signal_superfam,smart_Raf-like_ras-bd,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_PDZ,pfscan_PTB/PI_dom,pfscan_Raf-like_ras-bd,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS12	HGNC	ENSG00000159788				82	0	0	34	6	15
RPL9	0	genome.wustl.edu	37	4	39459818	39459818	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	39459818	39459818	T	-	DEL	RPL9	ENST00000295955	human	ensembl	74_37	-1	known	frame_shift_del	c.158	p.K53fs	1.000	pfam_Ribosomal_L6_a/b-dom,superfamily_Ribosomal_L6_a/b-dom,pirsf_Ribosomal_L6	pfam_Ribosomal_L6_a/b-dom,superfamily_Ribosomal_L6_a/b-dom,pirsf_Ribosomal_L6	-	no_errors	RPL9	HGNC	ENSG00000163682				59	0	0	53	11	17.1875
LIAS	0	genome.wustl.edu	37	4	39462464	39462464	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	39462464	39462464	A	-	DEL	LIAS	ENST00000261434	human	ensembl	74_37	+1	known	frame_shift_del	c.100	p.K36fs	0.641	pirsf_Lipoyl_synth	pfam_rSAM,smart_Elp3/MiaB/NifB,pirsf_Lipoyl_synth,tigrfam_Lipoyl_synth	-	no_errors	LIAS	HGNC	ENSG00000121897				213	0	0	223	13	5.50847
CNGA1	0	genome.wustl.edu	37	4	47939172	47939172	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	47939172	47939172	T	-	DEL	CNGA1	ENST00000402813	human	ensembl	74_37	-1	known	frame_shift_del	c.1546	p.T516fs	1.000	superfamily_cNMP-bd-like	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA1	HGNC	ENSG00000198515				161	0	0	126	31	19.7452
FRYL	0	genome.wustl.edu	37	4	48604083	48604083	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	48604083	48604083	A	-	DEL	FRYL	ENST00000358350	human	ensembl	74_37	-1	known	frame_shift_del	c.989	p.L330fs	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FRYL	HGNC	ENSG00000075539				79	0	0	48	20	29.4118
C4orf6	0	genome.wustl.edu	37	4	5527116	5527116	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	5527116	5527116	T	-	DEL	C4orf6	ENST00000195455	human	ensembl	74_37	+1	known	frame_shift_del	c.59	p.F23fs	0.077	NULL	NULL	-	no_errors	C4orf6	HGNC	ENSG00000082929				21	0	0	12	20	62.5
UGT2A3	0	genome.wustl.edu	37	4	69817137	69817137	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	69817137	69817137	A	-	DEL	UGT2A3	ENST00000251566	human	ensembl	74_37	-1	known	frame_shift_del	c.342	p.F114fs	0.001	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2A3	HGNC	ENSG00000135220				77	0	0	57	12	17.3913
ALB	0	genome.wustl.edu	37	4	74280753	74280753	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	74280753	74280753	T	-	DEL	ALB	ENST00000295897	human	ensembl	74_37	+1	known	frame_shift_del	c.1060	p.L355fs	0.999	pfam_Serum_albumin_N,superfamily_Serum_albumin-like,smart_Serum_albumin_N,pirsf_Serum_albumin/AFP,prints_ALB/AFP/VDB	pfam_Serum_albumin_N,superfamily_Serum_albumin-like,smart_Serum_albumin_N,pirsf_Serum_albumin/AFP,prints_ALB/AFP/VDB	-	no_errors	ALB	HGNC	ENSG00000163631				87	0	0	72	19	20.8791
AFP	0	genome.wustl.edu	37	4	74313372	74313372	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	74313372	74313372	A	-	DEL	AFP	ENST00000395792	human	ensembl	74_37	+1	known	frame_shift_del	c.1037	p.N348fs	0.959	pfam_Serum_albumin_N,superfamily_Serum_albumin-like,smart_Serum_albumin_N,pirsf_Serum_albumin/AFP,prints_Alpha-fetoprotein	pfam_Serum_albumin_N,superfamily_Serum_albumin-like,smart_Serum_albumin_N,pirsf_Serum_albumin/AFP,prints_Alpha-fetoprotein,prints_ALB/AFP/VDB	-	no_errors	AFP	HGNC	ENSG00000081051				69	0	0	39	12	23.5294
AFAP1-AS1	0	genome.wustl.edu	37	4	7776639	7776640	+	RNA	INS	-	-	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	7776639	7776640	-	A	INS	AFAP1-AS1	ENST00000608442	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	AFAP1-AS1	HGNC	ENSG00000272620				119	0	0	88	14	13.7255
PRKG2	0	genome.wustl.edu	37	4	82061809	82061810	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	82061809	82061810	-	T	INS	PRKG2	ENST00000264399	human	ensembl	74_37	-1	known	frame_shift_ins	c.1422_1421	p.N474fs	1.000:1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_cGMP-dependent_protein_kinase,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_cNMP-bd_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_cGMP-dependent_protein_kinase,pfscan_cNMP-bd_dom,pfscan_Prot_kinase_dom,prints_cGMP_dep_kinase,prints_cAMP/cGMP_kin	-	no_errors	PRKG2	HGNC	ENSG00000138669				69	0	0	35	7	16.6667
HNRNPD	0	genome.wustl.edu	37	4	83276431	83276431	+	RNA	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	83276431	83276431	A	-	DEL	HNRNPD	ENST00000508119	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	HNRNPD	HGNC	ENSG00000138668				31	0	0	13	9	40.9091
CDS1	0	genome.wustl.edu	37	4	85556475	85556475	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	4	85556475	85556475	T	-	DEL	CDS1	ENST00000295887	human	ensembl	74_37	+1	known	frame_shift_del	c.781	p.F263fs	1.000	pfam_PC_trans,pirsf_PC_Trfase_euk	pfam_PC_trans,pirsf_PC_Trfase_euk	-	no_errors	CDS1	HGNC	ENSG00000163624				128	0	0	80	30	27.2727
PAM	0	genome.wustl.edu	37	5	102296908	102296910	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	102296908	102296910	AGA	-	DEL	PAM	ENST00000304400	human	ensembl	74_37	+1	known	in_frame_del	c.1137_1139	p.E383in_frame_del	0.991:1.000:1.000	NULL	pfam_NHL_repeat,pfam_Cu2_ascorb_mOase_N,superfamily_PHM/PNGase_F_dom,pfscan_NHL_repeat_subgr,prints_Pep_amidat_mOase	-	no_errors	PAM	HGNC	ENSG00000145730				183	0	0	144	14	8.86076
PAM	0	genome.wustl.edu	37	5	102309949	102309949	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	102309949	102309949	A	-	DEL	PAM	ENST00000304400	human	ensembl	74_37	+1	known	frame_shift_del	c.1292	p.K433fs	1.000	NULL	pfam_NHL_repeat,pfam_Cu2_ascorb_mOase_N,superfamily_PHM/PNGase_F_dom,pfscan_NHL_repeat_subgr,prints_Pep_amidat_mOase	-	no_errors	PAM	HGNC	ENSG00000145730				122	0	0	60	24	28.5714
MAN2A1	0	genome.wustl.edu	37	5	109125195	109125195	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	109125195	109125195	A	-	DEL	MAN2A1	ENST00000261483	human	ensembl	74_37	+1	known	frame_shift_del	c.1910	p.N639fs	0.986	superfamily_Gal_mutarotase_SF_dom	pfam_Glyco_hydro_38_N,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Gal_mutarotase_SF_dom,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2A1	HGNC	ENSG00000112893				32	0	0	29	6	17.1429
SRP19	0	genome.wustl.edu	37	5	112203205	112203205	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	112203205	112203205	A	-	DEL	SRP19	ENST00000505459	human	ensembl	74_37	+1	known	frame_shift_del	c.406	p.K139fs	1.000	NULL	pfam_Signal_recog_particle_SRP19,superfamily_Signal_recog_particle_SRP19	-	no_errors	SRP19	HGNC	ENSG00000153037				71	0	0	58	13	18.3099
CCDC112	0	genome.wustl.edu	37	5	114611203	114611204	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	114611203	114611204	TC	-	DEL	CCDC112	ENST00000379611	human	ensembl	74_37	-1	known	frame_shift_del	c.628_627	p.K210fs	0.993:0.998	NULL	superfamily_Homeodomain-like	-	no_errors	CCDC112	HGNC	ENSG00000164221				169	0	0	122	37	23.2704
CEP120	0	genome.wustl.edu	37	5	122720714	122720714	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	122720714	122720714	A	-	DEL	CEP120	ENST00000306467	human	ensembl	74_37	-1	known	frame_shift_del	c.1694	p.L565fs	1.000	superfamily_C2_dom	pfam_DUF3668,superfamily_C2_dom	-	no_errors	CEP120	HGNC	ENSG00000168944				83	0	0	97	14	12.6126
LMNB1	0	genome.wustl.edu	37	5	126140574	126140574	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	126140574	126140574	A	-	DEL	LMNB1	ENST00000261366	human	ensembl	74_37	+1	known	frame_shift_del	c.466	p.S158fs	1.000	pfam_IF	pfam_IF,pfam_Lamin_tail_dom	-	no_errors	LMNB1	HGNC	ENSG00000113368				92	0	0	70	21	23.0769
CDKL3	0	genome.wustl.edu	37	5	133634349	133634349	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	133634349	133634349	A	-	DEL	CDKL3	ENST00000265334	human	ensembl	74_37	-1	known	frame_shift_del	c.1772	p.F591fs	0.700	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDKL3	HGNC	ENSG00000006837				157	0	0	134	36	21.1765
KDM3B	0	genome.wustl.edu	37	5	137765964	137765964	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	137765964	137765964	C	-	DEL	KDM3B	ENST00000314358	human	ensembl	74_37	+1	known	frame_shift_del	c.4920	p.P1642fs	1.000	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM3B	HGNC	ENSG00000120733				63	0	0	44	10	18.5185
WDR55	0	genome.wustl.edu	37	5	140049102	140049102	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	140049102	140049102	A	-	DEL	WDR55	ENST00000358337	human	ensembl	74_37	+1	known	frame_shift_del	c.1015	p.K341fs	1.000	pirsf_WD_repeat_p55	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_WD_repeat_p55,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR55	HGNC	ENSG00000120314				40	0	0	25	9	26.4706
PCDHA9	0	genome.wustl.edu	37	5	140230509	140230509	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	140230509	140230509	T	-	DEL	PCDHA9	ENST00000378122	human	ensembl	74_37	+1	known	frame_shift_del	c.2429	p.L813fs	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA9	HGNC	ENSG00000204961				63	0	0	66	22	25
PCDHGA11	0	genome.wustl.edu	37	5	140802964	140802964	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	140802964	140802964	C	-	DEL	PCDHGA11	ENST00000398587	human	ensembl	74_37	+1	known	frame_shift_del	c.2170	p.R724fs	0.082	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA11	HGNC	ENSG00000253873				79	0	0	56	22	28.2051
PCDHGC3	0	genome.wustl.edu	37	5	140857373	140857374	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	140857373	140857374	-	C	INS	PCDHGC3	ENST00000308177	human	ensembl	74_37	+1	known	frame_shift_ins	c.1690_1691	p.Q566fs	0.998:1.000	superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGC3	HGNC	ENSG00000240184				59	0	0	61	6	8.95522
DIAPH1	0	genome.wustl.edu	37	5	140905627	140905628	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	140905627	140905628	CT	-	DEL	DIAPH1	ENST00000253811	human	ensembl	74_37	-1	known	frame_shift_del	c.3555_3554	p.E1185fs	1.000:1.000	smart_FH2_Formin	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,pfam_Formin_homology_1,pfam_Drf_DAD,superfamily_ARM-type_fold,superfamily_tRNA-bd_arm,smart_FH2_Formin	-	no_errors	DIAPH1	HGNC	ENSG00000131504				139	0	0	109	23	17.4242
NDFIP1	0	genome.wustl.edu	37	5	141511526	141511527	+	RNA	DEL	AA	AA	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	141511526	141511527	AA	-	DEL	NDFIP1	ENST00000509436	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	NDFIP1	HGNC	ENSG00000131507				42	0	0	48	14	22.5806
KCTD16	0	genome.wustl.edu	37	5	143853530	143853531	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	143853530	143853531	-	A	INS	KCTD16	ENST00000507359	human	ensembl	74_37	+1	known	frame_shift_ins	c.1140_1141	p.A383fs	1.000:1.000	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD16	HGNC	ENSG00000183775				126	0	0	96	14	12.7273
TRIO	0	genome.wustl.edu	37	5	14477004	14477004	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	14477004	14477004	T	-	DEL	TRIO	ENST00000344204	human	ensembl	74_37	+1	known	frame_shift_del	c.6085	p.L2031fs	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382				37	0	0	35	7	16.6667
TCOF1	0	genome.wustl.edu	37	5	149777957	149777957	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	149777957	149777957	A	-	DEL	TCOF1	ENST00000451292	human	ensembl	74_37	+1	known	frame_shift_del	c.4494	p.K1500fs	0.722	NULL	pfam_TCS_treacle,smart_LisH_dimerisation,pfscan_LisH_dimerisation,prints_Treacle-like_TCS	-	no_errors	TCOF1	HGNC	ENSG00000070814				104	0	0	80	22	21.5686
MYO10	0	genome.wustl.edu	37	5	16694606	16694606	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	16694606	16694606	C	-	DEL	MYO10	ENST00000513610	human	ensembl	74_37	-1	known	frame_shift_del	c.3674	p.G1225fs	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_Pleckstrin_homology,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_Ras-assoc,superfamily_P-loop_NTPase,superfamily_FERM_central,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology,prints_Myosin_head_motor_dom	-	no_errors	MYO10	HGNC	ENSG00000145555				96	0	0	72	9	11.1111
STK10	0	genome.wustl.edu	37	5	171517345	171517345	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	171517345	171517345	T	-	DEL	STK10	ENST00000176763	human	ensembl	74_37	-1	known	frame_shift_del	c.1576	p.T526fs	1.000	NULL	pfam_PKK,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	STK10	HGNC	ENSG00000072786				286	0	0	191	29	13.1818
CREBRF	0	genome.wustl.edu	37	5	172537583	172537584	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	172537583	172537584	-	A	INS	CREBRF	ENST00000540014	human	ensembl	74_37	+1	known	frame_shift_ins	c.1482_1483	p.L496fs	0.999:1.000	NULL	NULL	-	no_errors	CREBRF	HGNC	ENSG00000164463				125	0	0	121	10	7.63359
CPEB4	0	genome.wustl.edu	37	5	173317746	173317747	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	173317746	173317747	-	T	INS	CPEB4	ENST00000265085	human	ensembl	74_37	+1	known	frame_shift_ins	c.1010_1011	p.A339fs	1.000:1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CPEB4	HGNC	ENSG00000113742				87	0	0	54	14	20.5882
NOP16	0	genome.wustl.edu	37	5	175812232	175812233	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	175812232	175812233	-	C	INS	NOP16	ENST00000389158	human	ensembl	74_37	-1	known	frame_shift_ins	c.383_382	p.E128fs	1.000:1.000	pfam_Ribosome_biogenesis_Nop16	pfam_Ribosome_biogenesis_Nop16	-	no_errors	NOP16	HGNC	ENSG00000048162				98	0	0	55	12	17.9104
NSD1	0	genome.wustl.edu	37	5	176696802	176696802	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	176696802	176696802	A	-	DEL	NSD1	ENST00000439151	human	ensembl	74_37	+1	known	frame_shift_del	c.5503	p.A1837fs	1.000	NULL	pfam_PWWP_dom,pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_PWWP_dom,smart_Znf_PHD,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger	-	no_errors	NSD1	HGNC	ENSG00000165671				80	0	0	58	14	19.4444
CANX	0	genome.wustl.edu	37	5	179149920	179149920	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	179149920	179149920	T	-	DEL	CANX	ENST00000415618	human	ensembl	74_37	+1	known	frame_shift_del	c.1403	p.F470fs	1.000	pfam_Calret/calnex,superfamily_ConA-like_lec_gl_sf,prints_Calret/calnex	pfam_Calret/calnex,superfamily_ConA-like_lec_gl_sf,superfamily_Calreticulin/calnexin_P_dom,prints_Calret/calnex	-	no_errors	CANX	HGNC	ENSG00000127022				101	0	0	93	10	9.70874
BTNL3	0	genome.wustl.edu	37	5	180432665	180432665	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	180432665	180432665	C	-	DEL	BTNL3	ENST00000342868	human	ensembl	74_37	+1	known	frame_shift_del	c.1194	p.S401fs	0.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Ig_V-set,superfamily_ConA-like_lec_gl_sf,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Ig-like_dom,prints_Butyrophylin	-	no_errors	BTNL3	HGNC	ENSG00000168903				78	0	0	52	18	25.7143
ZFR	0	genome.wustl.edu	37	5	32404161	32404161	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	32404161	32404161	T	-	DEL	ZFR	ENST00000265069	human	ensembl	74_37	-1	known	frame_shift_del	c.1074	p.E359fs	1.000	smart_Znf_U1	pfam_DZF,pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like,smart_DZF	-	no_errors	ZFR	HGNC	ENSG00000056097				157	0	0	144	25	14.7929
RAI14	0	genome.wustl.edu	37	5	34813722	34813723	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	34813722	34813723	-	A	INS	RAI14	ENST00000515799	human	ensembl	74_37	+1	known	frame_shift_ins	c.818_819	p.R276fs	1.000:1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_t-SNARE,superfamily_UBA-like,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	RAI14	HGNC	ENSG00000039560				114	1	0.869565	74	12	13.9535
NIPBL	0	genome.wustl.edu	37	5	36985083	36985083	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	36985083	36985083	A	-	DEL	NIPBL	ENST00000282516	human	ensembl	74_37	+1	known	frame_shift_del	c.1801	p.K603fs	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	NIPBL	HGNC	ENSG00000164190				120	1	0.826446	92	24	20.6897
RICTOR	0	genome.wustl.edu	37	5	38954826	38954826	+	RNA	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	38954826	38954826	T	-	DEL	RICTOR	ENST00000503698	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RICTOR	HGNC	ENSG00000164327				23	0	0	24	5	17.2414
RICTOR	0	genome.wustl.edu	37	5	38959432	38959432	+	RNA	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	38959432	38959432	A	-	DEL	RICTOR	ENST00000503698	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	RICTOR	HGNC	ENSG00000164327				38	0	0	31	7	18.4211
TTC33	0	genome.wustl.edu	37	5	40716477	40716477	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	40716477	40716477	T	-	DEL	TTC33	ENST00000337702	human	ensembl	74_37	-1	known	frame_shift_del	c.559	p.S187fs	0.000	NULL	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC33	HGNC	ENSG00000113638				121	0	0	109	30	21.5827
CARD6	0	genome.wustl.edu	37	5	40853094	40853094	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	40853094	40853094	T	-	DEL	CARD6	ENST00000254691	human	ensembl	74_37	+1	known	frame_shift_del	c.1660	p.F556fs	0.998	NULL	pfam_CARD,superfamily_DEATH-like_dom,smart_CARD,pfscan_CARD	-	no_errors	CARD6	HGNC	ENSG00000132357				183	0	0	154	32	17.2043
MROH2B	0	genome.wustl.edu	37	5	41000851	41000852	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	41000851	41000852	-	A	INS	MROH2B	ENST00000399564	human	ensembl	74_37	-1	known	frame_shift_ins	c.4279_4278	p.A1426fs	1.000:1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	MROH2B	HGNC	ENSG00000171495				32	0	0	18	9	33.3333
SKIV2L2	0	genome.wustl.edu	37	5	54696236	54696236	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	54696236	54696236	A	-	DEL	SKIV2L2	ENST00000230640	human	ensembl	74_37	+1	known	frame_shift_del	c.2468	p.A826fs	1.000	pirsf_RNA_helicase_ATP-dep_SK12/DOB1	pfam_DSH_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pirsf_RNA_helicase_ATP-dep_SK12/DOB1,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SKIV2L2	HGNC	ENSG00000039123				63	0	0	35	5	12.5
ZSWIM6	0	genome.wustl.edu	37	5	60822215	60822215	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	60822215	60822215	A	-	DEL	ZSWIM6	ENST00000252744	human	ensembl	74_37	+1	novel	frame_shift_del	c.1829	p.E613fs	1.000	NULL	pfscan_Znf_SWIM,prints_Antifreeze_1	-	no_errors	ZSWIM6	HGNC	ENSG00000130449				37	0	0	25	7	21.875
SREK1IP1	0	genome.wustl.edu	37	5	64020298	64020298	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	64020298	64020298	T	-	DEL	SREK1IP1	ENST00000513458	human	ensembl	74_37	-1	known	frame_shift_del	c.381	p.K129fs	0.967	NULL	superfamily_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	SREK1IP1	HGNC	ENSG00000153006				42	0	0	27	8	22.8571
BDP1	0	genome.wustl.edu	37	5	70766233	70766233	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	70766233	70766233	T	-	DEL	BDP1	ENST00000358731	human	ensembl	74_37	+1	known	frame_shift_del	c.931	p.L313fs	1.000	superfamily_Homeodomain-like,smart_SANT/Myb	superfamily_Homeodomain-like,smart_SANT/Myb	-	no_errors	BDP1	HGNC	ENSG00000145734				65	0	0	58	14	19.4444
AP3B1	0	genome.wustl.edu	37	5	77334906	77334907	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	77334906	77334907	-	T	INS	AP3B1	ENST00000255194	human	ensembl	74_37	-1	known	frame_shift_ins	c.2770_2769	p.L923fs	0.928:0.419	pirsf_AP3_beta	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_beta	-	no_errors	AP3B1	HGNC	ENSG00000132842				66	0	0	63	9	12.5
AP3B1	0	genome.wustl.edu	37	5	77334907	77334907	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	5	77334907	77334907	T	-	DEL	AP3B1	ENST00000255194	human	ensembl	74_37	-1	known	frame_shift_del	c.2769	p.K923fs	0.419	pirsf_AP3_beta	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_beta	-	no_errors	AP3B1	HGNC	ENSG00000132842				66	0	0	64	8	11.1111
MCHR2	0	genome.wustl.edu	37	6	100382358	100382358	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	100382358	100382358	A	-	DEL	MCHR2	ENST00000281806	human	ensembl	74_37	-1	known	frame_shift_del	c.623	p.F208fs	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_MCH2_receptor,prints_GPCR_Rhodpsn,prints_MCH_rcpt	-	no_errors	MCHR2	HGNC	ENSG00000152034				134	0	0	115	27	19.0141
ASCC3	0	genome.wustl.edu	37	6	101091910	101091910	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	101091910	101091910	T	-	DEL	ASCC3	ENST00000369162	human	ensembl	74_37	-1	known	frame_shift_del	c.3729	p.K1243fs	0.999	pfam_Sec63-dom,superfamily_P-loop_NTPase,smart_Sec63-dom	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_AAA+_ATPase,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ASCC3	HGNC	ENSG00000112249				55	0	0	52	14	21.2121
GRIK2	0	genome.wustl.edu	37	6	102503338	102503338	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	102503338	102503338	G	-	DEL	GRIK2	ENST00000421544	human	ensembl	74_37	+1	known	frame_shift_del	c.2445	p.V817fs	0.816	pfam_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK2	HGNC	ENSG00000164418				129	0	0	132	18	12
HACE1	0	genome.wustl.edu	37	6	105192433	105192433	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	105192433	105192433	T	-	DEL	HACE1	ENST00000262903	human	ensembl	74_37	-1	known	frame_shift_del	c.2396	p.N799fs	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_Ankyrin_rpt,superfamily_HECT,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_HECT,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_HECT,prints_Ankyrin_rpt	-	no_errors	HACE1	HGNC	ENSG00000085382				97	0	0	75	7	8.53659
TMEM14B	0	genome.wustl.edu	37	6	10756864	10756864	+	RNA	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	10756864	10756864	A	-	DEL	TMEM14B	ENST00000486421	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	TMEM14B	HGNC	ENSG00000137210				14	0	0	4	6	60
SESN1	0	genome.wustl.edu	37	6	109315692	109315692	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	109315692	109315692	T	-	DEL	SESN1	ENST00000436639	human	ensembl	74_37	-1	known	frame_shift_del	c.1093	p.R365fs	1.000	pfam_PA26	pfam_PA26	-	no_errors	SESN1	HGNC	ENSG00000080546				150	0	0	103	22	17.6
ELOVL2	0	genome.wustl.edu	37	6	10995330	10995330	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	10995330	10995330	T	-	DEL	ELOVL2	ENST00000354666	human	ensembl	74_37	-1	known	frame_shift_del	c.415	p.T139fs	1.000	pfam_GNS1_SUR4	pfam_GNS1_SUR4	-	no_errors	ELOVL2	HGNC	ENSG00000197977				157	0	0	125	14	10.0719
SLC16A10	0	genome.wustl.edu	37	6	111527826	111527826	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	111527826	111527826	A	-	DEL	SLC16A10	ENST00000368851	human	ensembl	74_37	+1	known	frame_shift_del	c.974	p.N327fs	0.011	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A10	HGNC	ENSG00000112394				133	0	0	111	12	9.7561
KIAA1919	0	genome.wustl.edu	37	6	111587361	111587361	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	111587361	111587361	T	-	DEL	KIAA1919	ENST00000368847	human	ensembl	74_37	+1	known	frame_shift_del	c.596	p.C202fs	0.469	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	KIAA1919	HGNC	ENSG00000173214				73	0	0	55	15	21.4286
TUBE1	0	genome.wustl.edu	37	6	112397206	112397206	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	112397206	112397206	T	-	DEL	TUBE1	ENST00000368662	human	ensembl	74_37	-1	known	frame_shift_del	c.746	p.K249fs	0.016	superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Epsilon_tubulin,prints_Tubulin	-	no_errors	TUBE1	HGNC	ENSG00000074935				175	0	0	174	33	15.942
KPNA5	0	genome.wustl.edu	37	6	117053387	117053389	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	117053387	117053389	AGA	-	DEL	KPNA5	ENST00000356348	human	ensembl	74_37	+1	known	in_frame_del	c.1521_1523	p.E509in_frame_del	0.993:1.000:1.000	superfamily_ARM-type_fold	pfam_Armadillo,pfam_Importin-a_IBB,pfam_HEAT,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,pfscan_Importin-a_IBB	-	no_errors	KPNA5	HGNC	ENSG00000196911				124	0	0	127	21	14.1892
ADTRP	0	genome.wustl.edu	37	6	11714640	11714641	+	RNA	DEL	AA	AA	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	11714640	11714641	AA	-	DEL	ADTRP	ENST00000512139	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	ADTRP	HGNC	ENSG00000111863				38	0	0	16	12	42.8571
STL	0	genome.wustl.edu	37	6	125231565	125231565	+	RNA	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	125231565	125231565	A	-	DEL	STL	ENST00000439075	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-510H23.1	Clone_based_vega_gene	ENSG00000236548				13	0	0	14	5	26.3158
NCOA7	0	genome.wustl.edu	37	6	126249853	126249855	+	In_Frame_Del	DEL	ATG	ATG	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	ATG	ATG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	126249853	126249855	ATG	-	DEL	NCOA7	ENST00000368357	human	ensembl	74_37	+1	known	in_frame_del	c.2765_2767	p.D923in_frame_del	1.000:1.000:1.000	pfam_TLDc,smart_TLDc	pfam_TLDc,pfam_LysM_dom,pfam_GRAM,smart_LysM_dom,smart_TLDc	-	no_errors	NCOA7	HGNC	ENSG00000111912				118	0	0	119	19	13.7681
THEMIS	0	genome.wustl.edu	37	6	128134568	128134568	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	128134568	128134568	T	-	DEL	THEMIS	ENST00000543064	human	ensembl	74_37	-1	known	frame_shift_del	c.1218	p.V407fs	0.397	NULL	NULL	-	no_errors	THEMIS	HGNC	ENSG00000172673				96	0	0	78	17	17.8947
AKAP7	0	genome.wustl.edu	37	6	131481276	131481276	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	131481276	131481276	A	-	DEL	AKAP7	ENST00000368123	human	ensembl	74_37	+1	known	frame_shift_del	c.163	p.K57fs	0.449	pfam_Kinase-A_anchor_nucl_local_sig	pfam_Kinase-A_anchor_nucl_local_sig,pfam_Kinase-A_anchor_RI-RII-bd_dom,superfamily_RNA_ligase/cNuc_Pdiesterase	-	no_errors	AKAP7	HGNC	ENSG00000118507				95	0	0	83	17	17
MED23	0	genome.wustl.edu	37	6	131917389	131917389	+	RNA	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	131917389	131917389	T	-	DEL	MED23	ENST00000479213	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MED23	HGNC	ENSG00000112282				16	0	0	11	5	31.25
MED23	0	genome.wustl.edu	37	6	131921295	131921295	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	131921295	131921295	A	-	DEL	MED23	ENST00000368058	human	ensembl	74_37	-1	known	frame_shift_del	c.2121	p.F707fs	1.000	pfam_Mediator_Med23	pfam_Mediator_Med23	-	no_errors	MED23	HGNC	ENSG00000112282				65	0	0	54	8	12.9032
MED23	0	genome.wustl.edu	37	6	131948470	131948473	+	RNA	DEL	AAAA	AAAA	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	AAAA	AAAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	131948470	131948473	AAAA	-	DEL	MED23	ENST00000489888	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001:0.004:0.006:0.011	-	-	-	no_errors	MED23	HGNC	ENSG00000112282				64	0	0	54	17	23.9437
NOL7	0	genome.wustl.edu	37	6	13620991	13620992	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	13620991	13620992	-	A	INS	NOL7	ENST00000451315	human	ensembl	74_37	+1	known	frame_shift_ins	c.706_707	p.Q239fs	0.542:0.993	NULL	pfam_NUC129	-	no_errors	NOL7	HGNC	ENSG00000225921				49	0	0	39	6	13.3333
SHPRH	0	genome.wustl.edu	37	6	146275964	146275964	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	146275964	146275964	T	-	DEL	SHPRH	ENST00000367503	human	ensembl	74_37	-1	known	frame_shift_del	c.495	p.E166fs	0.391	NULL	pfam_SNF2_N,pfam_Histone_H1/H5_H15,superfamily_P-loop_NTPase,superfamily_Znf_FYVE_PHD,superfamily_WW_dom,smart_Helicase_ATP-bd,smart_Histone_H1/H5_H15,smart_Znf_PHD,smart_Znf_RING,smart_Helicase_C,pfscan_Znf_RING,pfscan_Helicase_C	-	no_errors	SHPRH	HGNC	ENSG00000146414				107	0	0	116	21	15.3285
FBXO5	0	genome.wustl.edu	37	6	153293482	153293482	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	153293482	153293482	T	-	DEL	FBXO5	ENST00000229758	human	ensembl	74_37	-1	known	frame_shift_del	c.1017	p.D340fs	0.123	NULL	pfam_F-box_dom,superfamily_F-box_dom	-	no_errors	FBXO5	HGNC	ENSG00000112029				93	0	0	77	19	19.7917
SYNJ2	0	genome.wustl.edu	37	6	158508009	158508009	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	158508009	158508009	C	-	DEL	SYNJ2	ENST00000355585	human	ensembl	74_37	+1	known	frame_shift_del	c.3331	p.P1113fs	1.000	NULL	pfam_Syja_N,pfam_DUF1866,pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc,pfscan_RRM_dom,pfscan_Syja_N	-	no_errors	SYNJ2	HGNC	ENSG00000078269				33	0	0	13	9	40.9091
WTAP	0	genome.wustl.edu	37	6	160157368	160157368	+	RNA	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	160157368	160157368	T	-	DEL	WTAP	ENST00000494513	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	WTAP	HGNC	ENSG00000146457				123	0	0	96	21	17.9487
LPAL2	0	genome.wustl.edu	37	6	160887595	160887595	+	RNA	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	160887595	160887595	T	-	DEL	LPAL2	ENST00000606083	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.621	-	-	-	no_errors	LPAL2	HGNC	ENSG00000213071				13	0	0	11	4	26.6667
PLG	0	genome.wustl.edu	37	6	161135891	161135892	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	161135891	161135892	-	A	INS	PLG	ENST00000308192	human	ensembl	74_37	+1	known	frame_shift_ins	c.613_614	p.C206fs	0.003:0.000	pirsf_Pept_S1A_plasmin,pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pfscan_Kringle	pirsf_Pept_S1A_plasmin,pfam_Kringle,pfam_Peptidase_S1,pfam_PAN-1_domain,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1	-	no_errors	PLG	HGNC	ENSG00000122194				48	0	0	50	6	10.7143
QKI	0	genome.wustl.edu	37	6	163899920	163899920	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	163899920	163899920	A	-	DEL	QKI	ENST00000361752	human	ensembl	74_37	+1	known	frame_shift_del	c.394	p.K134fs	1.000	smart_KH_dom	pfam_KH_dom_type_1,smart_KH_dom	-	no_errors	QKI	HGNC	ENSG00000112531				166	0	0	127	17	11.8056
FGFR1OP	0	genome.wustl.edu	37	6	167438458	167438458	+	RNA	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	167438458	167438458	T	-	DEL	FGFR1OP	ENST00000496181	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.043	-	-	-	no_errors	FGFR1OP	HGNC	ENSG00000213066				20	0	0	20	10	33.3333
RBM24	0	genome.wustl.edu	37	6	17292448	17292449	+	RNA	DEL	TA	TA	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	TA	TA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	17292448	17292449	TA	-	DEL	RBM24	ENST00000504055	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.997:0.915	-	-	-	no_errors	RBM24	HGNC	ENSG00000112183				36	0	0	23	8	25.8065
RBM24	0	genome.wustl.edu	37	6	17292449	17292450	+	RNA	DEL	AA	AA	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	17292449	17292450	AA	-	DEL	RBM24	ENST00000508508	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.915:0.719	-	-	-	no_errors	RBM24	HGNC	ENSG00000112183				39	0	0	26	5	16.129
FAM8A1	0	genome.wustl.edu	37	6	17608468	17608468	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	17608468	17608468	T	-	DEL	FAM8A1	ENST00000259963	human	ensembl	74_37	+1	known	frame_shift_del	c.1140	p.F382fs	1.000	pfam_RDD	pfam_RDD	-	no_errors	FAM8A1	HGNC	ENSG00000137414				166	0	0	137	17	11.039
NUP153	0	genome.wustl.edu	37	6	17640225	17640225	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	17640225	17640225	A	-	DEL	NUP153	ENST00000537253	human	ensembl	74_37	-1	known	frame_shift_del	c.1884	p.F628fs	0.997	pfam_Nucleoporin_Nup153	pfam_Nucleoporin_Nup153,pfam_Znf_RanBP2,pfam_Retro-transposon_transp_CS,smart_Znf_RanBP2,pfscan_Znf_RanBP2	-	no_errors	NUP153	HGNC	ENSG00000124789				167	0	0	136	32	19.0476
RNF144B	0	genome.wustl.edu	37	6	18399838	18399839	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	18399838	18399839	-	C	INS	RNF144B	ENST00000259939	human	ensembl	74_37	+1	known	frame_shift_ins	c.73_74	p.L27fs	0.412:0.416	NULL	pfam_Znf_C6HC,smart_Znf_RING,smart_Znf_C6HC	-	no_errors	RNF144B	HGNC	ENSG00000137393				80	0	0	70	8	10.2564
OR2J2	0	genome.wustl.edu	37	6	29141422	29141422	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	29141422	29141422	A	-	DEL	OR2J2	ENST00000377167	human	ensembl	74_37	+1	known	frame_shift_del	c.10	p.N6fs	0.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2J2	HGNC	ENSG00000204700				125	0	0	127	31	19.6203
MDC1	0	genome.wustl.edu	37	6	30679846	30679846	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	30679846	30679846	C	-	DEL	MDC1	ENST00000376406	human	ensembl	74_37	-1	known	frame_shift_del	c.1873	p.A625fs	0.001	NULL	pfam_FHA_dom,superfamily_BRCT_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_BRCT_dom,pfscan_FHA_dom	-	no_errors	MDC1	HGNC	ENSG00000137337				64	0	0	47	14	22.9508
NFKBIL1	0	genome.wustl.edu	37	6	31525506	31525506	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	31525506	31525506	C	-	DEL	NFKBIL1	ENST00000376148	human	ensembl	74_37	+1	known	frame_shift_del	c.436	p.W148fs	0.998	NULL	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	NFKBIL1	HGNC	ENSG00000204498				58	0	0	41	11	21.1538
LSM2	0	genome.wustl.edu	37	6	31765402	31765402	+	RNA	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	31765402	31765402	A	-	DEL	LSM2	ENST00000470083	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LSM2	HGNC	ENSG00000204392				23	0	0	11	9	45
SLC44A4	0	genome.wustl.edu	37	6	31846749	31846750	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	31846749	31846750	-	C	INS	SLC44A4	ENST00000229729	human	ensembl	74_37	-1	known	frame_shift_ins	c.9_8	p.Q5fs	0.014:0.192	NULL	pfam_Choline_transptr-like	-	no_errors	SLC44A4	HGNC	ENSG00000204385				84	0	0	72	9	11.1111
EHMT2	0	genome.wustl.edu	37	6	31852462	31852462	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	31852462	31852462	G	-	DEL	EHMT2	ENST00000395728	human	ensembl	74_37	-1	known	frame_shift_del	c.2734	p.L912fs	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SET_dom,pfam_Pre-SET_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,prints_Ankyrin_rpt	-	no_errors	EHMT2	HGNC	ENSG00000204371				28	0	0	20	2	9.09091
RGL2	0	genome.wustl.edu	37	6	33263356	33263356	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	33263356	33263356	C	-	DEL	RGL2	ENST00000497454	human	ensembl	74_37	-1	known	frame_shift_del	c.949	p.E317fs	0.853	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-assoc,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RGL2	HGNC	ENSG00000237441				31	0	0	36	5	12.1951
RGL2	0	genome.wustl.edu	37	6	33263965	33263965	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	33263965	33263965	C	-	DEL	RGL2	ENST00000497454	human	ensembl	74_37	-1	known	frame_shift_del	c.608	p.G203fs	1.000	superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Ras-assoc,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RGL2	HGNC	ENSG00000237441				136	0	0	106	24	18.4615
RPL10A	0	genome.wustl.edu	37	6	35437973	35437973	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	35437973	35437973	T	-	DEL	RPL10A	ENST00000322203	human	ensembl	74_37	+1	known	frame_shift_del	c.328	p.L111fs	1.000	pfam_Ribosomal_L1/biogenesis,superfamily_Ribosomal_L1-like,pirsf_Ribosomal_L1	pfam_Ribosomal_L1/biogenesis,superfamily_Ribosomal_L1-like,pirsf_Ribosomal_L1	-	no_errors	RPL10A	HGNC	ENSG00000198755				55	0	0	61	7	10.2941
BRPF3	0	genome.wustl.edu	37	6	36181729	36181729	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	36181729	36181729	C	-	DEL	BRPF3	ENST00000357641	human	ensembl	74_37	+1	known	frame_shift_del	c.2555	p.P854fs	0.990	NULL	pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP_dom,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP_dom,pfscan_PWWP_dom,pfscan_Znf_PHD-finger,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRPF3	HGNC	ENSG00000096070				110	0	0	95	12	11.215
C6orf89	0	genome.wustl.edu	37	6	36867370	36867371	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	36867370	36867371	-	C	INS	C6orf89	ENST00000355190	human	ensembl	74_37	+1	known	frame_shift_ins	c.171_172	p.Q60fs	0.997:0.991	NULL	NULL	-	no_errors	C6orf89	HGNC	ENSG00000198663				101	0	0	74	4	5.12821
DNAH8	0	genome.wustl.edu	37	6	38816440	38816440	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	38816440	38816440	A	-	DEL	DNAH8	ENST00000359357	human	ensembl	74_37	+1	known	frame_shift_del	c.4411	p.N1473fs	1.000	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721				67	0	0	57	19	25
DLK2	0	genome.wustl.edu	37	6	43418413	43418413	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	43418413	43418413	G	-	DEL	DLK2	ENST00000357338	human	ensembl	74_37	-1	known	frame_shift_del	c.1016	p.P339fs	0.819	NULL	pfam_EG-like_dom,pfam_EGF_extracell,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	DLK2	HGNC	ENSG00000171462				25	0	0	28	5	15.1515
RUNX2	0	genome.wustl.edu	37	6	45296446	45296446	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	45296446	45296446	A	-	DEL	RUNX2	ENST00000352853	human	ensembl	74_37	+1	known	frame_shift_del	c.187	p.G66fs	0.983	NULL	pfam_Runt_dom,pfam_RunxI_C_dom,superfamily_p53-like_TF_DNA-bd,pfscan_Runt_dom,prints_AML1_Runt	-	no_errors	RUNX2	HGNC	ENSG00000124813				106	0	0	66	43	39.4495
SLC25A27	0	genome.wustl.edu	37	6	46630156	46630156	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	46630156	46630156	T	-	DEL	SLC25A27	ENST00000371347	human	ensembl	74_37	+1	known	frame_shift_del	c.427	p.L144fs	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A27	HGNC	ENSG00000153291				72	0	0	77	9	10.4651
DST	0	genome.wustl.edu	37	6	56382365	56382365	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	56382365	56382365	T	-	DEL	DST	ENST00000370754	human	ensembl	74_37	-1	known	frame_shift_del	c.18090	p.K6030fs	1.000	pfam_Spectrin_repeat,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	DST	HGNC	ENSG00000151914				47	0	0	42	13	23.6364
ZNF451	0	genome.wustl.edu	37	6	57012276	57012277	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	57012276	57012277	-	A	INS	ZNF451	ENST00000370706	human	ensembl	74_37	+1	known	frame_shift_ins	c.1393_1394	p.S467fs	0.000:0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF451	HGNC	ENSG00000112200				133	0	0	88	7	7.36842
PHF3	0	genome.wustl.edu	37	6	64394427	64394428	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	64394427	64394428	-	A	INS	PHF3	ENST00000262043	human	ensembl	74_37	+1	known	frame_shift_ins	c.804_805	p.N269fs	0.987:0.986	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	PHF3	HGNC	ENSG00000118482				94	0	0	87	18	17.1429
BAI3	0	genome.wustl.edu	37	6	69348715	69348715	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	69348715	69348715	A	-	DEL	BAI3	ENST00000370598	human	ensembl	74_37	+1	known	frame_shift_del	c.148	p.N51fs	1.000	pfscan_CUB_dom	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_CUB_dom,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI3	HGNC	ENSG00000135298				101	0	0	108	12	10
SMAP1	0	genome.wustl.edu	37	6	71508370	71508370	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	71508370	71508370	A	-	DEL	SMAP1	ENST00000370455	human	ensembl	74_37	+1	known	frame_shift_del	c.506	p.K172fs	1.000	NULL	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	SMAP1	HGNC	ENSG00000112305				29	0	0	10	15	60
FILIP1	0	genome.wustl.edu	37	6	76124508	76124508	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	76124508	76124508	T	-	DEL	FILIP1	ENST00000237172	human	ensembl	74_37	-1	known	frame_shift_del	c.181	p.T61fs	0.997	NULL	pfam_Cortactin-binding_p2_N,prints_Tropomyosin	-	no_errors	FILIP1	HGNC	ENSG00000118407				267	0	0	277	57	17.0659
TTK	0	genome.wustl.edu	37	6	80751910	80751910	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	80751910	80751910	A	-	DEL	TTK	ENST00000369798	human	ensembl	74_37	+1	known	frame_shift_del	c.2565	p.K857fs	0.011	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TTK	HGNC	ENSG00000112742				70	0	0	54	7	11.4754
CYB5R4	0	genome.wustl.edu	37	6	84634230	84634231	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	84634230	84634231	-	A	INS	CYB5R4	ENST00000369681	human	ensembl	74_37	+1	known	frame_shift_ins	c.733_734	p.E248fs	0.390:0.868	superfamily_HSP20-like_chaperone,pfscan_CS_dom	pfam_Cyt_B5-like_heme/steroid-bd,pfam_OxRdtase_FAD-bd_dom,pfam_OxRdtase_FAD/NAD-bd,pfam_CS_dom,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_Riboflavin_synthase-like_b-brl,superfamily_HSP20-like_chaperone,pfscan_CS_dom,pfscan_Cyt_B5-like_heme/steroid-bd,prints_NADH-Cyt_B5_reductase,prints_Cyt_B5-like_heme/steroid-bd	-	no_errors	CYB5R4	HGNC	ENSG00000065615				87	0	0	80	11	12.0879
ZNF292	0	genome.wustl.edu	37	6	87970954	87970954	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	87970954	87970954	A	-	DEL	ZNF292	ENST00000369577	human	ensembl	74_37	+1	known	frame_shift_del	c.7607	p.N2538fs	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF292	HGNC	ENSG00000188994				90	0	0	88	13	12.8713
C6orf165	0	genome.wustl.edu	37	6	88144700	88144700	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	88144700	88144700	A	-	DEL	C6orf165	ENST00000369562	human	ensembl	74_37	+1	known	frame_shift_del	c.1423	p.N477fs	1.000	pfam_DUF3508	pfam_DUF3508	-	no_errors	C6ORF165	Uniprot_gn	ENSG00000272514				71	0	0	67	13	16.25
MAP3K7	0	genome.wustl.edu	37	6	91226170	91226170	+	RNA	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	6	91226170	91226170	A	-	DEL	MAP3K7	ENST00000479630	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.947	-	-	-	no_errors	MAP3K7	HGNC	ENSG00000135341				63	0	0	37	22	37.2881
ENSG00000239969	0	genome.wustl.edu	37	7	102021057	102021057	+	RNA	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	102021057	102021057	A	-	DEL	ENSG00000239969	ENST00000484974	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.079	-	-	-	no_errors	RP11-163E9.2	Clone_based_vega_gene	ENSG00000239969				87	0	0	52	27	34.1772
LRRC17	0	genome.wustl.edu	37	7	102584993	102584993	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	102584993	102584993	A	-	DEL	LRRC17	ENST00000339431	human	ensembl	74_37	+1	known	frame_shift_del	c.1265	p.K424fs	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRRC17	HGNC	ENSG00000128606				143	1	0.694444	131	31	19.1358
KMT2E	0	genome.wustl.edu	37	7	104730565	104730565	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	104730565	104730565	A	-	DEL	KMT2E	ENST00000257745	human	ensembl	74_37	+1	known	frame_shift_del	c.1468	p.G492fs	1.000	NULL	pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_PHD-finger	-	no_errors	KMT2E	HGNC	ENSG00000005483				188	0	0	155	11	6.62651
ATXN7L1	0	genome.wustl.edu	37	7	105254801	105254802	+	In_Frame_Ins	INS	-	-	GAG			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	105254801	105254802	-	GAG	INS	ATXN7L1	ENST00000419735	human	ensembl	74_37	-1	known	in_frame_ins	c.1980_1979	p.662in_frame_insS	0.000:0.098	NULL	pfam_SCA7_dom	-	no_errors	ATXN7L1	HGNC	ENSG00000146776				14	0	0	22	3	12
LRRN3	0	genome.wustl.edu	37	7	110762900	110762901	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	110762900	110762901	-	A	INS	LRRN3	ENST00000308478	human	ensembl	74_37	+1	known	frame_shift_ins	c.72_73	p.V26fs	1.000:1.000	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRRN3	HGNC	ENSG00000173114				157	0	0	123	27	18
IFRD1	0	genome.wustl.edu	37	7	112108038	112108039	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	112108038	112108039	-	T	INS	IFRD1	ENST00000005558	human	ensembl	74_37	+1	known	frame_shift_ins	c.909_910	p.Y305fs	1.000:1.000	pfam_Interferon-rel_develop_reg_N,superfamily_ARM-type_fold	pfam_Interferon-rel_develop_reg_N,pfam_Interferon-rel_develop_reg_C,superfamily_ARM-type_fold	-	no_errors	IFRD1	HGNC	ENSG00000006652				81	0	0	79	8	9.1954
TMEM168	0	genome.wustl.edu	37	7	112424191	112424191	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	112424191	112424191	A	-	DEL	TMEM168	ENST00000312814	human	ensembl	74_37	-1	known	frame_shift_del	c.690	p.F230fs	1.000	NULL	superfamily_ConA-like_lec_gl_sf	-	no_errors	TMEM168	HGNC	ENSG00000146802				158	0	0	151	13	7.92683
CPED1	0	genome.wustl.edu	37	7	120764394	120764394	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	120764394	120764394	T	-	DEL	CPED1	ENST00000310396	human	ensembl	74_37	+1	known	frame_shift_del	c.928	p.F311fs	0.987	NULL	NULL	-	no_errors	CPED1	HGNC	ENSG00000106034				142	0	0	133	34	20.3593
ZNF800	0	genome.wustl.edu	37	7	127014068	127014068	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	127014068	127014068	T	-	DEL	ZNF800	ENST00000265827	human	ensembl	74_37	-1	known	frame_shift_del	c.1322	p.K441fs	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF800	HGNC	ENSG00000048405				86	0	0	63	7	10
TMEM209	0	genome.wustl.edu	37	7	129813546	129813546	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	129813546	129813546	A	-	DEL	TMEM209	ENST00000397622	human	ensembl	74_37	-1	known	frame_shift_del	c.1483	p.C495fs	1.000	pfam_Cytochrome_B561-rel	pfam_Cytochrome_B561-rel	-	no_errors	TMEM209	HGNC	ENSG00000146842				173	0	0	120	22	15.493
CHCHD3	0	genome.wustl.edu	37	7	132659915	132659915	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	132659915	132659915	T	-	DEL	CHCHD3	ENST00000448878	human	ensembl	74_37	-1	novel	frame_shift_del	c.383	p.N128fs	0.000	pfam_DUF737	pfam_DUF737	-	no_errors	CHCHD3	HGNC	ENSG00000106554				80	0	0	60	18	23.0769
DGKI	0	genome.wustl.edu	37	7	137148245	137148245	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	137148245	137148245	G	-	DEL	DGKI	ENST00000288490	human	ensembl	74_37	-1	known	frame_shift_del	c.2749	p.R917fs	0.293	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	DGKI	HGNC	ENSG00000157680				146	0	0	81	19	19
JHDM1D	0	genome.wustl.edu	37	7	139833448	139833448	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	139833448	139833448	T	-	DEL	JHDM1D	ENST00000397560	human	ensembl	74_37	-1	known	frame_shift_del	c.289	p.R97fs	1.000	superfamily_Znf_FYVE_PHD	pfam_JmjC_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_Znf_PHD-finger	-	no_errors	JHDM1D	HGNC	ENSG00000006459				56	0	0	66	6	8.33333
EPHB6	0	genome.wustl.edu	37	7	142562398	142562398	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	142562398	142562398	C	-	DEL	EPHB6	ENST00000392957	human	ensembl	74_37	+1	known	frame_shift_del	c.840	p.R283fs	0.997	pirsf_Tyr_kinase_ephrin_rcpt	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHB6	HGNC	ENSG00000106123				35	0	0	22	5	18.5185
KMT2C	0	genome.wustl.edu	37	7	151845524	151845524	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	151845524	151845524	A	-	DEL	KMT2C	ENST00000355193	human	ensembl	74_37	-1	known	frame_shift_del	c.13659	p.F4553fs	1.000	superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Znf_RING	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2C	HGNC	ENSG00000055609				148	0	0	114	36	24
INSIG1	0	genome.wustl.edu	37	7	155099960	155099961	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	155099960	155099961	-	A	INS	INSIG1	ENST00000340368	human	ensembl	74_37	+1	known	frame_shift_ins	c.814_815	p.P274fs	0.999:1.000	NULL	pfam_INSIG_fam	-	no_errors	INSIG1	HGNC	ENSG00000186480				70	0	0	57	13	18.5714
RAPGEF5	0	genome.wustl.edu	37	7	22306597	22306598	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	22306597	22306598	-	G	INS	RAPGEF5	ENST00000344041	human	ensembl	74_37	-1	known	frame_shift_ins	c.323_322	p.K108fs	1.000:1.000	NULL	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF5	HGNC	ENSG00000136237				102	0	0	98	6	5.76923
NUPL2	0	genome.wustl.edu	37	7	23224773	23224773	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	23224773	23224773	G	-	DEL	NUPL2	ENST00000258742	human	ensembl	74_37	+1	known	frame_shift_del	c.206	p.G71fs	1.000	NULL	smart_Znf_CCCH	-	no_errors	NUPL2	HGNC	ENSG00000136243				109	0	0	99	9	8.33333
GLI3	0	genome.wustl.edu	37	7	42003913	42003913	+	RNA	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	42003913	42003913	T	-	DEL	GLI3	ENST00000479210	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GLI3	HGNC	ENSG00000106571				47	0	0	25	8	24.2424
LOC100506895	0	genome.wustl.edu	37	7	43548760	43548762	+	RNA	DEL	CTC	CTC	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	43548760	43548762	CTC	-	DEL	LOC100506895	ENST00000436105	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000:0.000	-	-	-	no_errors	AC011738.4	Clone_based_vega_gene	ENSG00000231638				72	0	0	48	12	20
C7orf57	0	genome.wustl.edu	37	7	48086205	48086205	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	48086205	48086205	A	-	DEL	C7orf57	ENST00000348904	human	ensembl	74_37	+1	known	frame_shift_del	c.499	p.K169fs	1.000	NULL	NULL	-	no_errors	C7orf57	HGNC	ENSG00000164746				58	0	0	49	5	9.25926
DDC	0	genome.wustl.edu	37	7	50531075	50531075	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	50531075	50531075	T	-	DEL	DDC	ENST00000357936	human	ensembl	74_37	-1	known	frame_shift_del	c.1297	p.I433fs	1.000	superfamily_PyrdxlP-dep_Trfase	pfam_PyrdxlP-dep_de-COase,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase,prints_Aromatic_deC	-	no_errors	DDC	HGNC	ENSG00000132437				101	0	0	64	12	15.7895
PMS2CL	0	genome.wustl.edu	37	7	6791127	6791127	+	RNA	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	6791127	6791127	A	-	DEL	PMS2CL	ENST00000486256	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.016	-	-	-	no_errors	PMS2CL	HGNC	ENSG00000187953				42	0	0	45	9	16.6667
AUTS2	0	genome.wustl.edu	37	7	70229815	70229816	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	70229815	70229816	-	C	INS	AUTS2	ENST00000342771	human	ensembl	74_37	+1	known	frame_shift_ins	c.1292_1293	p.L433fs	1.000:1.000	NULL	prints_AUTS2	-	no_errors	AUTS2	HGNC	ENSG00000158321				13	0	0	8	6	42.8571
DTX2	0	genome.wustl.edu	37	7	76112249	76112249	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	76112249	76112249	A	-	DEL	DTX2	ENST00000324432	human	ensembl	74_37	+1	known	frame_shift_del	c.693	p.H232fs	0.794	NULL	pfam_WWE-dom,smart_WWE-dom_subgr,smart_Znf_RING,pfscan_WWE-dom,pfscan_Znf_RING	-	no_errors	DTX2	HGNC	ENSG00000091073				182	0	0	169	9	5.05618
PHTF2	0	genome.wustl.edu	37	7	77569580	77569581	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	77569580	77569581	-	T	INS	PHTF2	ENST00000248550	human	ensembl	74_37	+1	known	frame_shift_ins	c.1701_1702	p.L569fs	1.000:1.000	NULL	pfam_TF_homeodomain_male	-	no_errors	PHTF2	HGNC	ENSG00000006576				125	0	0	117	10	7.87402
PCLO	0	genome.wustl.edu	37	7	82390055	82390055	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	82390055	82390055	T	-	DEL	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	frame_shift_del	c.15188	p.K5063fs	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				58	0	0	39	7	15.2174
PCLO	0	genome.wustl.edu	37	7	82595088	82595089	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	82595088	82595089	-	T	INS	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	frame_shift_ins	c.4016_4015	p.T1339fs	0.985:0.968	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				72	0	0	72	6	7.69231
CROT	0	genome.wustl.edu	37	7	87027909	87027909	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	87027909	87027909	T	-	DEL	CROT	ENST00000331536	human	ensembl	74_37	+1	known	frame_shift_del	c.1788	p.C598fs	0.003	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CROT	HGNC	ENSG00000005469				92	0	0	63	20	24.0964
ABCB4	0	genome.wustl.edu	37	7	87051451	87051452	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	87051451	87051452	-	A	INS	ABCB4	ENST00000265723	human	ensembl	74_37	-1	known	frame_shift_ins	c.2302_2301	p.T767fs	0.998:0.660	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,pfam_Zeta_toxin_domain,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB4	HGNC	ENSG00000005471				50	0	0	44	8	15.3846
CYP51A1	0	genome.wustl.edu	37	7	91743159	91743160	+	Splice_Site	INS	-	-	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	91743159	91743160	-	A	INS	CYP51A1	ENST00000003100	human	ensembl	74_37	-1	known	splice_site_ins	c.1352-3_1352-2	e10-2	0.998:0.001	-	-	-	no_errors	CYP51A1	HGNC	ENSG00000001630				61	0	0	65	9	12.1622
ERVW-1	0	genome.wustl.edu	37	7	92098886	92098886	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	92098886	92098886	A	-	DEL	ERVW-1	ENST00000493463	human	ensembl	74_37	-1	known	frame_shift_del	c.810	p.F270fs	0.349	pfam_TLV/ENV_coat_polyprotein	pfam_TLV/ENV_coat_polyprotein	-	no_errors	ERVW-1	HGNC	ENSG00000242950				89	0	0	90	18	16.6667
SAMD9L	0	genome.wustl.edu	37	7	92760738	92760738	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	92760738	92760738	T	-	DEL	SAMD9L	ENST00000318238	human	ensembl	74_37	-1	known	frame_shift_del	c.4547	p.N1516fs	0.000	NULL	superfamily_SAM/pointed,superfamily_P-loop_NTPase,pfscan_SAM	-	no_errors	SAMD9L	HGNC	ENSG00000177409				119	1	0.833333	97	22	18.4874
TRRAP	0	genome.wustl.edu	37	7	98528335	98528336	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	7	98528335	98528336	-	G	INS	TRRAP	ENST00000359863	human	ensembl	74_37	+1	known	frame_shift_ins	c.3473_3474	p.V1161fs	1.000:1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	TRRAP	HGNC	ENSG00000196367				110	0	0	103	12	10.4348
RGS22	0	genome.wustl.edu	37	8	100990178	100990178	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	100990178	100990178	T	-	DEL	RGS22	ENST00000360863	human	ensembl	74_37	-1	known	frame_shift_del	c.3486	p.K1162fs	0.010	NULL	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam	-	no_errors	RGS22	HGNC	ENSG00000132554				62	0	0	56	6	9.67742
UBR5	0	genome.wustl.edu	37	8	103289349	103289349	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	103289349	103289349	T	-	DEL	UBR5	ENST00000520539	human	ensembl	74_37	-1	known	frame_shift_del	c.6360	p.E2121fs	0.987	NULL	pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_RCC1/BLIP-II,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin	-	no_errors	UBR5	HGNC	ENSG00000104517				90	0	0	92	39	29.771
UBR5	0	genome.wustl.edu	37	8	103324394	103324395	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	103324394	103324395	-	T	INS	UBR5	ENST00000520539	human	ensembl	74_37	-1	known	frame_shift_ins	c.2231_2230	p.T744fs	1.000:1.000	NULL	pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_RCC1/BLIP-II,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin	-	no_errors	UBR5	HGNC	ENSG00000104517				41	0	0	33	7	17.5
EIF3H	0	genome.wustl.edu	37	8	117669464	117669464	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	117669464	117669464	A	-	DEL	EIF3H	ENST00000521861	human	ensembl	74_37	-1	known	frame_shift_del	c.547	p.S183fs	1.000	NULL	pfam_JAB_MPN_dom,smart_JAB_MPN_dom	-	no_errors	EIF3H	HGNC	ENSG00000147677				114	0	0	89	15	14.4231
ENPP2	0	genome.wustl.edu	37	8	120598545	120598545	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	120598545	120598545	T	-	DEL	ENPP2	ENST00000259486	human	ensembl	74_37	-1	known	frame_shift_del	c.1404	p.K468fs	0.999	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,pfam_Somatomedin_B_dom,pfam_DNA/RNA_non-sp_Endonuclease,superfamily_Alkaline_phosphatase_core,smart_Somatomedin_B_dom,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A,pfscan_Somatomedin_B_dom,prints_Somatomedin_B_chordata	-	no_errors	ENPP2	HGNC	ENSG00000136960				90	0	0	97	6	5.82524
COL14A1	0	genome.wustl.edu	37	8	121259922	121259922	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	121259922	121259922	C	-	DEL	COL14A1	ENST00000297848	human	ensembl	74_37	+1	known	frame_shift_del	c.2550	p.P852fs	0.857	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_VWF_A,pfam_Fibronectin_type3,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL14A1	HGNC	ENSG00000187955				108	0	0	89	9	9.18367
ANXA13	0	genome.wustl.edu	37	8	124707762	124707762	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	124707762	124707762	T	-	DEL	ANXA13	ENST00000262219	human	ensembl	74_37	-1	known	frame_shift_del	c.574	p.I192fs	0.994	pfam_Annexin_repeat,smart_Annexin_repeat	pfam_Annexin_repeat,smart_Annexin_repeat,prints_Annexin,prints_AnnexinXIII	-	no_errors	ANXA13	HGNC	ENSG00000104537				206	0	0	151	35	18.8172
KIAA0196	0	genome.wustl.edu	37	8	126094634	126094634	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	126094634	126094634	T	-	DEL	KIAA0196	ENST00000318410	human	ensembl	74_37	-1	known	frame_shift_del	c.408	p.K136fs	1.000	pfam_WASH_strumpellin	pfam_WASH_strumpellin,superfamily_Ig_E-set	-	no_errors	KIAA0196	HGNC	ENSG00000164961				67	0	0	71	15	17.4419
NSMCE2	0	genome.wustl.edu	37	8	126194349	126194351	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	126194349	126194351	AAG	-	DEL	NSMCE2	ENST00000287437	human	ensembl	74_37	+1	known	in_frame_del	c.269_271	p.E92in_frame_del	1.000:1.000:1.000	NULL	pfscan_Znf_MIZ	-	no_errors	NSMCE2	HGNC	ENSG00000156831				130	0	0	174	10	5.43478
PHF20L1	0	genome.wustl.edu	37	8	133836264	133836264	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	133836264	133836264	A	-	DEL	PHF20L1	ENST00000395386	human	ensembl	74_37	+1	putative	frame_shift_del	c.1595	p.V535fs	1.000	NULL	pfam_DUF3776,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Tudor,smart_Tudor-like_plant	-	no_errors	PHF20L1	HGNC	ENSG00000129292				156	0	0	72	38	34.5455
PUF60	0	genome.wustl.edu	37	8	144900376	144900376	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	144900376	144900376	C	-	DEL	PUF60	ENST00000526683	human	ensembl	74_37	-1	known	frame_shift_del	c.590	p.G197fs	1.000	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom,tigrfam_PolyU-bd	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom,tigrfam_PolyU-bd	-	no_errors	PUF60	HGNC	ENSG00000179950				19	0	0	18	2	10
SLC52A2	0	genome.wustl.edu	37	8	145582846	145582848	+	Splice_Site	DEL	AGA	AGA	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	145582846	145582848	AGA	-	DEL	SLC52A2	ENST00000402965	human	ensembl	74_37	+1	known	splice_site_del	c.1-2_0	e1-1	0.000:0.000:0.000	-	-	-	no_errors	SLC52A2	HGNC	ENSG00000185803				34	0	0	29	4	12.1212
VPS28	0	genome.wustl.edu	37	8	145652341	145652341	+	RNA	DEL	G	G	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	145652341	145652341	G	-	DEL	VPS28	ENST00000526734	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	VPS28	HGNC	ENSG00000160948				24	0	0	13	4	23.5294
KIFC2	0	genome.wustl.edu	37	8	145692709	145692709	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	145692709	145692709	C	-	DEL	KIFC2	ENST00000301332	human	ensembl	74_37	+1	known	frame_shift_del	c.454	p.S154fs	0.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	KIFC2	HGNC	ENSG00000167702				70	0	0	51	4	7.27273
PDGFRL	0	genome.wustl.edu	37	8	17486241	17486241	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	17486241	17486241	G	-	DEL	PDGFRL	ENST00000251630	human	ensembl	74_37	+1	known	frame_shift_del	c.751	p.G252fs	0.323	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PDGFRL	HGNC	ENSG00000104213				34	0	0	36	11	23.4043
CCAR2	0	genome.wustl.edu	37	8	22473323	22473324	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	22473323	22473324	-	C	INS	CCAR2	ENST00000308511	human	ensembl	74_37	+1	known	frame_shift_ins	c.1506_1507	p.L504fs	0.680:0.809	NULL	superfamily_NA-bd_OB-fold	-	no_errors	CCAR2	HGNC	ENSG00000158941				75	0	0	80	7	8.04598
RHOBTB2	0	genome.wustl.edu	37	8	22865592	22865592	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	22865592	22865592	G	-	DEL	RHOBTB2	ENST00000251822	human	ensembl	74_37	+1	known	frame_shift_del	c.1588	p.P532fs	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,pfam_Small_GTPase,pfam_MIRO-like,superfamily_P-loop_NTPase,superfamily_BTB/POZ_fold,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_BTB/POZ-like,pfscan_BTB/POZ-like,prints_Small_GTPase	-	no_errors	RHOBTB2	HGNC	ENSG00000008853				83	0	0	56	5	8.19672
ADAM28	0	genome.wustl.edu	37	8	24167707	24167709	+	In_Frame_Del	DEL	TAT	TAT	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	TAT	TAT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	24167707	24167709	TAT	-	DEL	ADAM28	ENST00000265769	human	ensembl	74_37	+1	known	in_frame_del	c.259_261	p.Y88in_frame_del	0.981:0.995:0.994	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM28	HGNC	ENSG00000042980				77	0	0	61	17	21.7949
NRG1	0	genome.wustl.edu	37	8	32453511	32453511	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	32453511	32453511	A	-	DEL	NRG1	ENST00000338921	human	ensembl	74_37	+1	known	frame_shift_del	c.266	p.K91fs	0.998	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Neuregulin_1_C,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Ig-like_dom,prints_Neuregulin	-	no_errors	NRG1	HGNC	ENSG00000157168				155	0	0	139	21	13.125
PRKDC	0	genome.wustl.edu	37	8	48701554	48701555	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	48701554	48701555	-	T	INS	PRKDC	ENST00000314191	human	ensembl	74_37	-1	known	frame_shift_ins	c.10812_10811	p.N3604fs	0.004:0.000	NULL	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729				56	0	0	60	7	10.4478
ST18	0	genome.wustl.edu	37	8	53062482	53062482	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	53062482	53062482	T	-	DEL	ST18	ENST00000276480	human	ensembl	74_37	-1	known	frame_shift_del	c.1862	p.N621fs	1.000	pfam_Myelin_TF	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	ST18	HGNC	ENSG00000147488				82	0	0	109	13	10.6557
SDR16C5	0	genome.wustl.edu	37	8	57219270	57219270	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	57219270	57219270	A	-	DEL	SDR16C5	ENST00000303749	human	ensembl	74_37	-1	known	frame_shift_del	c.675	p.F225fs	0.996	prints_Glc/ribitol_DH	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	SDR16C5	HGNC	ENSG00000170786				78	0	0	82	10	10.8696
CLVS1	0	genome.wustl.edu	37	8	62412295	62412295	+	RNA	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	62412295	62412295	T	-	DEL	CLVS1	ENST00000518858	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	CLVS1	HGNC	ENSG00000177182				12	0	0	4	2	33.3333
PDE7A	0	genome.wustl.edu	37	8	66635839	66635840	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	66635839	66635840	-	T	INS	PDE7A	ENST00000401827	human	ensembl	74_37	-1	known	frame_shift_ins	c.1180_1179	p.Y393fs	1.000:1.000	pfam_PDEase_catalytic_dom	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE7A	HGNC	ENSG00000205268				45	0	0	29	4	12.1212
MYBL1	0	genome.wustl.edu	37	8	67488453	67488453	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	67488453	67488453	T	-	DEL	MYBL1	ENST00000522677	human	ensembl	74_37	-1	known	frame_shift_del	c.1259	p.N420fs	0.992	NULL	pfam_C-myb_C,pfam_SANT/Myb,pfam_Tscrpt_reg_Wos2-domain,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MYBL1	HGNC	ENSG00000185697				213	0	0	185	51	21.6102
SGK3	0	genome.wustl.edu	37	8	67752239	67752239	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	67752239	67752239	T	-	DEL	SGK3	ENST00000345714	human	ensembl	74_37	+1	known	frame_shift_del	c.743	p.F250fs	0.999	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Phox,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_Phox,smart_Phox,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Phox,pfscan_Prot_kinase_dom	-	no_errors	SGK3	HGNC	ENSG00000104205				62	0	0	46	22	32.3529
PREX2	0	genome.wustl.edu	37	8	68992721	68992721	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	68992721	68992721	T	-	DEL	PREX2	ENST00000288368	human	ensembl	74_37	+1	known	frame_shift_del	c.1686	p.S565fs	0.015	smart_DEP_dom,pfscan_DEP_dom	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889				75	0	0	58	22	27.5
EYA1	0	genome.wustl.edu	37	8	72156850	72156850	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	72156850	72156850	A	-	DEL	EYA1	ENST00000340726	human	ensembl	74_37	-1	known	frame_shift_del	c.1128	p.F376fs	0.955	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_EYA	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_EYA	-	no_errors	EYA1	HGNC	ENSG00000104313				31	0	0	23	7	23.3333
TERF1	0	genome.wustl.edu	37	8	73934470	73934470	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	73934470	73934470	A	-	DEL	TERF1	ENST00000276603	human	ensembl	74_37	+1	known	frame_shift_del	c.557	p.N187fs	1.000	pfam_Telomere_rpt-bd_fac_dimer_dom,superfamily_Telomere_rpt-bd_fac_dimer_dom,pirsf_Telomere_repeat-bd-1/2	pfam_Telomere_rpt-bd_fac_dimer_dom,pfam_SANT/Myb,superfamily_Telomere_rpt-bd_fac_dimer_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pirsf_Telomere_repeat-bd-1/2,pfscan_Myb-like_dom	-	no_errors	TERF1	HGNC	ENSG00000147601				74	0	0	79	5	5.95238
STAU2	0	genome.wustl.edu	37	8	74526000	74526000	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	74526000	74526000	T	-	DEL	STAU2	ENST00000524300	human	ensembl	74_37	-1	known	frame_shift_del	c.870	p.K290fs	1.000	NULL	pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,pfscan_dsRNA-bd_dom	-	no_errors	STAU2	HGNC	ENSG00000040341				45	0	0	41	6	12.766
ZFHX4	0	genome.wustl.edu	37	8	77617546	77617547	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	77617546	77617547	-	G	INS	ZFHX4	ENST00000521891	human	ensembl	74_37	+1	known	frame_shift_ins	c.1223_1224	p.L411fs	1.000:1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656				59	0	0	56	6	9.67742
PSKH2	0	genome.wustl.edu	37	8	87076406	87076406	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	87076406	87076406	T	-	DEL	PSKH2	ENST00000276616	human	ensembl	74_37	-1	known	frame_shift_del	c.640	p.S214fs	0.983	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	PSKH2	HGNC	ENSG00000147613				100	0	0	86	11	11.3402
TMEM67	0	genome.wustl.edu	37	8	94828723	94828723	+	RNA	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	94828723	94828723	A	-	DEL	TMEM67	ENST00000463467	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.614	-	-	-	no_errors	TMEM67	HGNC	ENSG00000164953				26	0	0	34	7	17.0732
CDH17	0	genome.wustl.edu	37	8	95186357	95186357	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	95186357	95186357	T	-	DEL	CDH17	ENST00000027335	human	ensembl	74_37	-1	known	frame_shift_del	c.556	p.T186fs	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH17	HGNC	ENSG00000079112				211	0	0	214	12	5.30973
KIAA1429	0	genome.wustl.edu	37	8	95531563	95531563	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	95531563	95531563	A	-	DEL	KIAA1429	ENST00000297591	human	ensembl	74_37	-1	known	frame_shift_del	c.2163	p.F721fs	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	KIAA1429	HGNC	ENSG00000164944				83	0	0	68	25	26.8817
INTS8	0	genome.wustl.edu	37	8	95892421	95892421	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	95892421	95892421	A	-	DEL	INTS8	ENST00000523731	human	ensembl	74_37	+1	known	frame_shift_del	c.2947	p.K985fs	1.000	NULL	NULL	-	no_errors	INTS8	HGNC	ENSG00000164941				78	0	0	89	18	16.8224
ENSG00000270077	0	genome.wustl.edu	37	8	98156579	98156582	+	RNA	DEL	AAAA	AAAA	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	AAAA	AAAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	98156579	98156582	AAAA	-	DEL	ENSG00000270077	ENST00000602771	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000:0.045:0.000	-	-	-	no_errors	KB-1958F4.1	Clone_based_vega_gene	ENSG00000270077				9	0	0	3	2	40
SNORA72	0	genome.wustl.edu	37	8	99054504	99054504	+	RNA	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	8	99054504	99054504	T	-	DEL	SNORA72	ENST00000501016	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	KB-1208A12.3	Clone_based_vega_gene	ENSG00000245970				15	0	0	15	5	25
NANS	0	genome.wustl.edu	37	9	100845320	100845320	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	100845320	100845320	A	-	DEL	NANS	ENST00000210444	human	ensembl	74_37	+1	known	frame_shift_del	c.1063	p.I357fs	1.000	superfamily_AFP_Neu5c_C	pfam_Neu5Ac_N,pfam_SAF,superfamily_AFP_Neu5c_C,smart_SAF,pfscan_AFP_Neu5c_C,prints_Antifreeze_III	-	no_errors	NANS	HGNC	ENSG00000095380				63	0	0	56	10	15.1515
C9orf114	0	genome.wustl.edu	37	9	131591119	131591120	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	131591119	131591120	-	T	INS	C9orf114	ENST00000361256	human	ensembl	74_37	-1	known	frame_shift_ins	c.103_102	p.W34fs	1.000:0.998	NULL	pfam_Put_MeTrfase,superfamily_NA-bd_OB-fold	-	no_errors	C9orf114	HGNC	ENSG00000198917				130	0	0	94	19	16.8142
C9orf106	0	genome.wustl.edu	37	9	132084806	132084806	+	RNA	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	132084806	132084806	A	-	DEL	C9orf106	ENST00000316786	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C9orf106	HGNC	ENSG00000179082				75	0	0	67	9	11.8421
TOR1B	0	genome.wustl.edu	37	9	132571788	132571788	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	132571788	132571788	T	-	DEL	TOR1B	ENST00000259339	human	ensembl	74_37	+1	known	frame_shift_del	c.937	p.F314fs	0.988	superfamily_P-loop_NTPase,pirsf_Torsin_subgr	pfam_Torsin,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,pirsf_Torsin_subgr	-	no_errors	TOR1B	HGNC	ENSG00000136816				111	0	0	72	19	20.8791
C9orf78	0	genome.wustl.edu	37	9	132596001	132596001	+	RNA	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	132596001	132596001	A	-	DEL	C9orf78	ENST00000461762	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.115	-	-	-	no_errors	C9orf78	HGNC	ENSG00000136819				49	0	0	30	5	14.2857
NUP214	0	genome.wustl.edu	37	9	134003840	134003840	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	134003840	134003840	T	-	DEL	NUP214	ENST00000451030	human	ensembl	74_37	+1	known	frame_shift_del	c.363	p.F123fs	0.997	NULL	smart_WD40_repeat	-	no_errors	NUP214	HGNC	ENSG00000126883				129	0	0	92	27	22.6891
ENSG00000236986	0	genome.wustl.edu	37	9	134008392	134008392	+	RNA	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	134008392	134008392	T	-	DEL	ENSG00000236986	ENST00000587264	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	RP11-544A12.4	Clone_based_vega_gene	ENSG00000236986				37	0	0	23	6	20.6897
TSC1	0	genome.wustl.edu	37	9	135804209	135804209	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	135804209	135804209	G	-	DEL	TSC1	ENST00000298552	human	ensembl	74_37	-1	known	frame_shift_del	c.51	p.M18fs	0.000	pfam_Hamartin,superfamily_ARM-type_fold	pfam_Hamartin,superfamily_ARM-type_fold	-	no_errors	TSC1	HGNC	ENSG00000165699				50	0	0	65	17	20.7317
BRD3	0	genome.wustl.edu	37	9	136918529	136918529	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	136918529	136918529	G	-	DEL	BRD3	ENST00000303407	human	ensembl	74_37	-1	known	frame_shift_del	c.71	p.P24fs	1.000	superfamily_Bromodomain	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	BRD3	HGNC	ENSG00000169925				27	0	0	16	4	20
SEC16A	0	genome.wustl.edu	37	9	139370379	139370379	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	139370379	139370379	A	-	DEL	SEC16A	ENST00000313050	human	ensembl	74_37	-1	known	frame_shift_del	c.1689	p.F563fs	1.000	NULL	NULL	-	no_errors	SEC16A	HGNC	ENSG00000148396				29	0	0	13	2	13.3333
PSIP1	0	genome.wustl.edu	37	9	15472612	15472613	+	RNA	DEL	AA	AA	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	15472612	15472613	AA	-	DEL	PSIP1	ENST00000495873	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001:0.000	-	-	-	no_errors	PSIP1	HGNC	ENSG00000164985				96	0	0	57	20	25.974
TOPORS	0	genome.wustl.edu	37	9	32544122	32544122	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	32544122	32544122	T	-	DEL	TOPORS	ENST00000360538	human	ensembl	74_37	-1	known	frame_shift_del	c.401	p.N134fs	1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	TOPORS	HGNC	ENSG00000197579				164	0	0	81	53	39.5522
TAF1L	0	genome.wustl.edu	37	9	32633584	32633584	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	32633584	32633584	T	-	DEL	TAF1L	ENST00000242310	human	ensembl	74_37	-1	known	frame_shift_del	c.1994	p.K665fs	1.000	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728				141	0	0	115	24	17.2662
SIGMAR1	0	genome.wustl.edu	37	9	34636896	34636896	+	RNA	DEL	C	C	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	34636896	34636896	C	-	DEL	SIGMAR1	ENST00000478146	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	SIGMAR1	HGNC	ENSG00000147955				11	0	0	7	2	22.2222
DOCK8	0	genome.wustl.edu	37	9	405015	405015	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	405015	405015	T	-	DEL	DOCK8	ENST00000453981	human	ensembl	74_37	+1	known	frame_shift_del	c.3332	p.F1113fs	1.000	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N,superfamily_ARM-type_fold	-	no_errors	DOCK8	HGNC	ENSG00000107099				58	0	0	57	14	19.7183
CNTNAP3B	0	genome.wustl.edu	37	9	43844265	43844265	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	43844265	43844265	G	-	DEL	CNTNAP3B	ENST00000377564	human	ensembl	74_37	+1	known	frame_shift_del	c.1599	p.L534fs	0.000	superfamily_ConA-like_lec_gl_sf,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP3B	HGNC	ENSG00000154529				123	0	0	75	4	5.06329
KIAA2026	0	genome.wustl.edu	37	9	5968044	5968044	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	5968044	5968044	T	-	DEL	KIAA2026	ENST00000399933	human	ensembl	74_37	-1	novel	frame_shift_del	c.2187	p.A730fs	1.000	NULL	superfamily_Bromodomain	-	no_errors	KIAA2026	HGNC	ENSG00000183354				19	0	0	8	2	20
FAM122A	0	genome.wustl.edu	37	9	71395787	71395788	+	Frame_Shift_Del	DEL	GT	GT	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	71395787	71395788	GT	-	DEL	FAM122A	ENST00000394264	human	ensembl	74_37	+1	known	frame_shift_del	c.707_708	p.V239fs	0.152:0.077	NULL	NULL	-	no_errors	FAM122A	HGNC	ENSG00000187866				188	0	0	127	37	22.561
TRPM3	0	genome.wustl.edu	37	9	73151921	73151922	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	73151921	73151922	-	A	INS	TRPM3	ENST00000423814	human	ensembl	74_37	-1	known	frame_shift_ins	c.4153_4152	p.K1384fs	1.000:1.000	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM3	HGNC	ENSG00000083067				195	0	0	100	24	19.3548
FRMD3	0	genome.wustl.edu	37	9	85914050	85914050	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	9	85914050	85914050	A	-	DEL	FRMD3	ENST00000304195	human	ensembl	74_37	-1	known	frame_shift_del	c.978	p.F326fs	1.000	pfam_FERM-adjacent	pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	FRMD3	HGNC	ENSG00000172159				74	0	0	56	14	20
ZMAT1	0	genome.wustl.edu	37	X	101138439	101138439	+	RNA	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	101138439	101138439	T	-	DEL	ZMAT1	ENST00000494068	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZMAT1	HGNC	ENSG00000166432				27	0	0	11	18	62.069
UTP14A	0	genome.wustl.edu	37	X	129055622	129055622	+	RNA	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	129055622	129055622	A	-	DEL	UTP14A	ENST00000498179	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	UTP14A	HGNC	ENSG00000156697				18	0	0	24	6	20
USP26	0	genome.wustl.edu	37	X	132160413	132160413	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	132160413	132160413	T	-	DEL	USP26	ENST00000370832	human	ensembl	74_37	-1	known	frame_shift_del	c.1836	p.G613fs	0.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP26	HGNC	ENSG00000134588				42	0	0	24	14	36.8421
MAP7D3	0	genome.wustl.edu	37	X	135313186	135313186	+	RNA	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	135313186	135313186	T	-	DEL	MAP7D3	ENST00000477124	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.018	-	-	-	no_errors	MAP7D3	HGNC	ENSG00000129680				15	0	0	14	8	36.3636
RBMX	0	genome.wustl.edu	37	X	135961586	135961588	+	Frame_Shift_Del	DEL	TGT	TGT	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	TGT	TGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	135961586	135961588	TGT	-	DEL	RBMX	ENST00000320676	human	ensembl	74_37	-1	known	frame_shift_del	c.1	p.M1fs	1.000	NULL	pfam_RRM_dom,pfam_RBM1CTR,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBMX	HGNC	ENSG00000147274				58	0	0	48	7	12.7273
MCF2	0	genome.wustl.edu	37	X	138701772	138701773	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	138701772	138701773	-	T	INS	MCF2	ENST00000370578	human	ensembl	74_37	-1	known	frame_shift_ins	c.1216_1215	p.L405fs	0.073:0.002	smart_Spectrin/alpha-actinin	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	MCF2	HGNC	ENSG00000101977				31	0	0	12	10	45.4545
AVPR2	0	genome.wustl.edu	37	X	153171693	153171693	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	153171693	153171693	G	-	DEL	AVPR2	ENST00000337474	human	ensembl	74_37	+1	known	frame_shift_del	c.733	p.R247fs	0.003	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Vprsn_rcpt_V2	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Vprsn_rcpt_V2,prints_Vasoprsn_rcpt,prints_GPCR_Rhodpsn	-	no_errors	AVPR2	HGNC	ENSG00000126895				32	0	0	17	5	22.7273
F8	0	genome.wustl.edu	37	X	154157686	154157686	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	154157686	154157686	T	-	DEL	F8	ENST00000360256	human	ensembl	74_37	-1	known	frame_shift_del	c.4379	p.N1460fs	0.012	NULL	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F8	HGNC	ENSG00000185010				56	0	0	49	29	37.1795
CA5B	0	genome.wustl.edu	37	X	15790676	15790676	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	15790676	15790676	G	-	DEL	CA5B	ENST00000318636	human	ensembl	74_37	+1	known	frame_shift_del	c.398	p.A135fs	1.000	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA5B	HGNC	ENSG00000169239				156	0	0	78	41	34.4538
DMD	0	genome.wustl.edu	37	X	31227807	31227808	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	31227807	31227808	AA	-	DEL	DMD	ENST00000357033	human	ensembl	74_37	-1	known	frame_shift_del	c.9371_9370	p.L3124fs	1.000:1.000	pfam_EF-hand_dom_typ1,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947				23	0	0	9	19	67.8571
MXRA5	0	genome.wustl.edu	37	X	3240185	3240185	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	3240185	3240185	A	-	DEL	MXRA5	ENST00000217939	human	ensembl	74_37	-1	known	frame_shift_del	c.3541	p.S1181fs	0.000	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MXRA5	HGNC	ENSG00000101825				67	0	0	28	27	49.0909
BCOR	0	genome.wustl.edu	37	X	39913265	39913265	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	39913265	39913265	A	-	DEL	BCOR	ENST00000378444	human	ensembl	74_37	-1	known	frame_shift_del	c.4850	p.L1617fs	0.997	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCOR	HGNC	ENSG00000183337				18	0	0	17	12	41.3793
BCOR	0	genome.wustl.edu	37	X	39934127	39934127	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	39934127	39934127	T	-	DEL	BCOR	ENST00000378444	human	ensembl	74_37	-1	known	frame_shift_del	c.472	p.S158fs	0.984	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCOR	HGNC	ENSG00000183337				40	0	0	29	7	19.4444
WDR45	0	genome.wustl.edu	37	X	48933099	48933101	+	In_Frame_Del	DEL	AGG	AGG	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	48933099	48933101	AGG	-	DEL	WDR45	ENST00000322995	human	ensembl	74_37	-1	known	in_frame_del	c.784_782	p.S261in_frame_del	1.000:1.000:1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR45	HGNC	ENSG00000196998				12	0	0	7	3	30
AMER1	0	genome.wustl.edu	37	X	63412648	63412648	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	63412648	63412648	A	-	DEL	AMER1	ENST00000330258	human	ensembl	74_37	-1	known	frame_shift_del	c.519	p.F173fs	0.899	pfam_Uncharacterised_FAM123	pfam_Uncharacterised_FAM123	-	no_errors	AMER1	HGNC	ENSG00000184675				44	0	0	27	9	25
DLG3	0	genome.wustl.edu	37	X	69722114	69722115	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	69722114	69722115	CT	-	DEL	DLG3	ENST00000194900	human	ensembl	74_37	+1	known	frame_shift_del	c.2545_2546	p.*850fs	1.000:1.000	NULL	pfam_GK/Ca_channel_bsu,pfam_PDZ,pfam_PDZ_assoc,pfam_MAGUK_PEST_N,pfam_SH3_domain,pfam_SH3_2,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pirsf_M-assoc_guanylate_kinase,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	DLG3	HGNC	ENSG00000082458				19	0	0	8	10	55.5556
XIST	0	genome.wustl.edu	37	X	73046080	73046080	+	RNA	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	73046080	73046080	T	-	DEL	XIST	ENST00000416330	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	XIST	HGNC	ENSG00000229807				79	0	0	57	11	16.1765
XIST	0	genome.wustl.edu	37	X	73071762	73071762	+	RNA	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	73071762	73071762	A	-	DEL	XIST	ENST00000429829	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.649	-	-	-	no_errors	XIST	HGNC	ENSG00000229807				131	0	0	62	9	12.6761
XIST	0	genome.wustl.edu	37	X	73072090	73072091	+	RNA	INS	-	-	A			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	73072090	73072091	-	A	INS	XIST	ENST00000429829	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.049:0.002	-	-	-	no_errors	XIST	HGNC	ENSG00000229807				12	0	0	12	4	25
FAM9A	0	genome.wustl.edu	37	X	8763306	8763307	+	In_Frame_Ins	INS	-	-	CTG			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	8763306	8763307	-	CTG	INS	FAM9A	ENST00000381003	human	ensembl	74_37	-1	known	in_frame_ins	c.644_643	p.215in_frame_insA	0.088:0.108	NULL	NULL	-	no_errors	FAM9A	HGNC	ENSG00000183304				9	0	0	3	2	40
FAM9A	0	genome.wustl.edu	37	X	8764320	8764320	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	X	8764320	8764320	T	-	DEL	FAM9A	ENST00000381003	human	ensembl	74_37	-1	known	frame_shift_del	c.477	p.K159fs	0.007	NULL	NULL	-	no_errors	FAM9A	HGNC	ENSG00000183304				19	0	0	4	7	63.6364
USP9Y	0	genome.wustl.edu	37	Y	14968773	14968775	+	RNA	DEL	AAA	AAA	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	Y	14968773	14968775	AAA	-	DEL	USP9Y	ENST00000471409	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.995:0.996:0.998	-	-	-	no_errors	USP9Y	HGNC	ENSG00000114374				15	0	0	5	4	44.4444
UTY	0	genome.wustl.edu	37	Y	15411007	15411007	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4184-01A-01D-1126-08	TCGA-BR-4184-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5d19854c-b88b-42a6-aac4-4daed4ed5b7e	6be02310-66c9-482c-8a7d-a281d25f5102	Y	15411007	15411007	A	-	DEL	UTY	ENST00000382896	human	ensembl	74_37	-1	known	frame_shift_del	c.3542	p.L1181fs	1.000	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,pfam_TPR_1,smart_TPR_repeat,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	UTY	HGNC	ENSG00000183878				26	0	0	7	3	30
