Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
COL11A1	0	genome.wustl.edu	37	1	103352525	103352525	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4187-01A-01D-1126-08	TCGA-BR-4187-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b45eb56-8286-4094-8bff-d0cf5c05cda9	30a6f1ff-df78-470a-b645-0e46c00252d8	1	103352525	103352525	C	A	SNP	COL11A1	ENST00000358392	human	ensembl	74_37	-1	known	missense	c.4732	p.D1578Y	0.974	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A1	HGNC	ENSG00000060718				145	0	0	130	11	7.80142
KIF1B	0	genome.wustl.edu	37	1	10394612	10394612	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4187-01A-01D-1126-08	TCGA-BR-4187-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b45eb56-8286-4094-8bff-d0cf5c05cda9	30a6f1ff-df78-470a-b645-0e46c00252d8	1	10394612	10394612	G	A	SNP	KIF1B	ENST00000263934	human	ensembl	74_37	+1	known	missense	c.2821	p.V941M	1.000	NULL	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_Pleckstrin_homology,pfam_KIF1B,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,smart_Pleckstrin_homology,pfscan_FHA_dom,pfscan_Pleckstrin_homology,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1B	HGNC	ENSG00000054523				108	0	0	145	11	7.05128
AMY2B	0	genome.wustl.edu	37	1	104120221	104120221	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4187-01A-01D-1126-08	TCGA-BR-4187-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b45eb56-8286-4094-8bff-d0cf5c05cda9	30a6f1ff-df78-470a-b645-0e46c00252d8	1	104120221	104120221	G	A	SNP	AMY2B	ENST00000361355	human	ensembl	74_37	+1	known	missense	c.1211	p.R404H	1.000	superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	pfam_Glyco_hydro_13_cat_dom,pfam_A-amylase_b_C,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom,smart_A-amylase_b_C,prints_Alpha_amylase	-	no_errors	AMY2B	HGNC	ENSG00000240038				246	0	0	248	18	6.76692
TNN	0	genome.wustl.edu	37	1	175046731	175046731	+	Silent	SNP	C	C	T			TCGA-BR-4187-01A-01D-1126-08	TCGA-BR-4187-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b45eb56-8286-4094-8bff-d0cf5c05cda9	30a6f1ff-df78-470a-b645-0e46c00252d8	1	175046731	175046731	C	T	SNP	TNN	ENST00000239462	human	ensembl	74_37	+1	known	silent	c.177	p.D59	0.021	NULL	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_Fibronectin_type3	-	no_errors	TNN	HGNC	ENSG00000120332				49	0	0	44	7	13.7255
ASTN1	0	genome.wustl.edu	37	1	176999973	176999973	+	Silent	SNP	G	G	A			TCGA-BR-4187-01A-01D-1126-08	TCGA-BR-4187-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b45eb56-8286-4094-8bff-d0cf5c05cda9	30a6f1ff-df78-470a-b645-0e46c00252d8	1	176999973	176999973	G	A	SNP	ASTN1	ENST00000367654	human	ensembl	74_37	-1	known	silent	c.981	p.S327	1.000	NULL	superfamily_Fibronectin_type3,smart_EG-like_dom,smart_MACPF,pfscan_Fibronectin_type3	-	no_errors	ASTN1	HGNC	ENSG00000152092				82	0	0	61	10	14.0845
USH2A	0	genome.wustl.edu	37	1	216073486	216073486	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4187-01A-01D-1126-08	TCGA-BR-4187-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b45eb56-8286-4094-8bff-d0cf5c05cda9	30a6f1ff-df78-470a-b645-0e46c00252d8	1	216073486	216073486	G	A	SNP	USH2A	ENST00000366943	human	ensembl	74_37	-1	known	missense	c.7525	p.R2509W	0.921	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781				97	0	0	78	10	11.3636
EFCAB7	0	genome.wustl.edu	37	1	64021086	64021086	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4187-01A-01D-1126-08	TCGA-BR-4187-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b45eb56-8286-4094-8bff-d0cf5c05cda9	30a6f1ff-df78-470a-b645-0e46c00252d8	1	64021086	64021086	A	G	SNP	EFCAB7	ENST00000371088	human	ensembl	74_37	+1	known	missense	c.1114	p.T372A	1.000	NULL	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	EFCAB7	HGNC	ENSG00000203965				103	0	0	109	6	5.21739
MUC2	0	genome.wustl.edu	37	11	1093349	1093349	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4187-01A-01D-1126-08	TCGA-BR-4187-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b45eb56-8286-4094-8bff-d0cf5c05cda9	30a6f1ff-df78-470a-b645-0e46c00252d8	11	1093349	1093349	C	T	SNP	MUC2	ENST00000441003	human	ensembl	74_37	+1	known	missense	c.5168	p.P1723L	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,superfamily_Prot_inh_PMP,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC2	HGNC	ENSG00000198788				23	0	0	28	3	9.67742
SOX6	0	genome.wustl.edu	37	11	15994601	15994601	+	Silent	SNP	G	G	A			TCGA-BR-4187-01A-01D-1126-08	TCGA-BR-4187-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b45eb56-8286-4094-8bff-d0cf5c05cda9	30a6f1ff-df78-470a-b645-0e46c00252d8	11	15994601	15994601	G	A	SNP	SOX6	ENST00000352083	human	ensembl	74_37	-1	known	silent	c.2241	p.I747	0.993	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX6	HGNC	ENSG00000110693				51	0	0	40	8	16.6667
CEP57	0	genome.wustl.edu	37	11	95546138	95546138	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4187-01A-01D-1126-08	TCGA-BR-4187-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b45eb56-8286-4094-8bff-d0cf5c05cda9	30a6f1ff-df78-470a-b645-0e46c00252d8	11	95546138	95546138	G	C	SNP	CEP57	ENST00000325542	human	ensembl	74_37	+1	known	missense	c.245	p.R82P	0.999	NULL	pfam_Cep57_MT-bd_dom	-	no_errors	CEP57	HGNC	ENSG00000166037				111	0	0	122	11	8.27068
WSCD2	0	genome.wustl.edu	37	12	108589947	108589947	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4187-01A-01D-1126-08	TCGA-BR-4187-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b45eb56-8286-4094-8bff-d0cf5c05cda9	30a6f1ff-df78-470a-b645-0e46c00252d8	12	108589947	108589947	G	A	SNP	WSCD2	ENST00000261400	human	ensembl	74_37	+1	known	missense	c.338	p.R113Q	0.998	NULL	pfam_WSC_carb-bd,superfamily_P-loop_NTPase,smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd	-	no_errors	WSCD2	HGNC	ENSG00000075035				46	0	0	44	4	8.33333
RARG	0	genome.wustl.edu	37	12	53607425	53607425	+	Silent	SNP	C	C	T			TCGA-BR-4187-01A-01D-1126-08	TCGA-BR-4187-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b45eb56-8286-4094-8bff-d0cf5c05cda9	30a6f1ff-df78-470a-b645-0e46c00252d8	12	53607425	53607425	C	T	SNP	RARG	ENST00000394426	human	ensembl	74_37	-1	known	silent	c.873	p.G291	0.995	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Retinoic_acid_rcpt,prints_Nuc_orph_rcpt,prints_Retinoid-X_rcpt/HNF4	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Nuc_orph_rcpt,prints_Retinoid-X_rcpt/HNF4	-	no_errors	RARG	HGNC	ENSG00000172819				55	0	0	53	4	7.01754
ZFC3H1	0	genome.wustl.edu	37	12	72023392	72023392	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4187-01A-01D-1126-08	TCGA-BR-4187-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b45eb56-8286-4094-8bff-d0cf5c05cda9	30a6f1ff-df78-470a-b645-0e46c00252d8	12	72023392	72023392	G	T	SNP	ZFC3H1	ENST00000378743	human	ensembl	74_37	-1	known	missense	c.3823	p.H1275N	1.000	NULL	pfam_Putative_zinc-finger_domain,smart_HAT,pfscan_TPR-contain_dom	-	no_errors	ZFC3H1	HGNC	ENSG00000133858				44	0	0	40	5	11.1111
CUL4A	0	genome.wustl.edu	37	13	113893752	113893752	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4187-01A-01D-1126-08	TCGA-BR-4187-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b45eb56-8286-4094-8bff-d0cf5c05cda9	30a6f1ff-df78-470a-b645-0e46c00252d8	13	113893752	113893752	G	A	SNP	CUL4A	ENST00000375440	human	ensembl	74_37	+1	known	missense	c.922	p.D308N	0.515	pfam_Cullin_N,superfamily_Cullin_repeat-like_dom	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL4A	HGNC	ENSG00000139842				53	0	0	66	4	5.71429
HDC	0	genome.wustl.edu	37	15	50540522	50540522	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4187-01A-01D-1126-08	TCGA-BR-4187-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b45eb56-8286-4094-8bff-d0cf5c05cda9	30a6f1ff-df78-470a-b645-0e46c00252d8	15	50540522	50540522	T	C	SNP	HDC	ENST00000267845	human	ensembl	74_37	-1	known	missense	c.1060	p.S354G	1.000	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase,prints_Aromatic_deC	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase,prints_Aromatic_deC	-	no_errors	HDC	HGNC	ENSG00000140287				50	0	0	53	8	13.1148
SPNS1	0	genome.wustl.edu	37	16	28993708	28993708	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4187-01A-01D-1126-08	TCGA-BR-4187-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b45eb56-8286-4094-8bff-d0cf5c05cda9	30a6f1ff-df78-470a-b645-0e46c00252d8	16	28993708	28993708	G	A	SNP	SPNS1	ENST00000311008	human	ensembl	74_37	+1	known	missense	c.997	p.G333R	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SPNS1	HGNC	ENSG00000169682				64	0	0	80	6	6.97674
BCKDK	0	genome.wustl.edu	37	16	31122413	31122413	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4187-01A-01D-1126-08	TCGA-BR-4187-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b45eb56-8286-4094-8bff-d0cf5c05cda9	30a6f1ff-df78-470a-b645-0e46c00252d8	16	31122413	31122413	C	T	SNP	BCKDK	ENST00000219794	human	ensembl	74_37	+1	known	missense	c.718	p.R240C	1.000	superfamily_HATPase_ATP-bd	pfam_BCDHK/PDK_N,pfam_HATPase_ATP-bd,superfamily_BCDHK/PDK_N,superfamily_HATPase_ATP-bd,smart_HATPase_ATP-bd,pfscan_Sig_transdc_His_kinase_core,prints_Sig_transdc_His_kin-like_C	-	no_errors	BCKDK	HGNC	ENSG00000103507				52	0	0	41	9	18
RGS11	0	genome.wustl.edu	37	16	321028	321028	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4187-01A-01D-1126-08	TCGA-BR-4187-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b45eb56-8286-4094-8bff-d0cf5c05cda9	30a6f1ff-df78-470a-b645-0e46c00252d8	16	321028	321028	C	T	SNP	RGS11	ENST00000397770	human	ensembl	74_37	-1	known	missense	c.934	p.V312M	0.304	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	pfam_RGS_dom,pfam_G-protein_gamma-like_dom,pfam_DEP_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_G-protein_gamma-like_dom,smart_DEP_dom,smart_G-protein_gamma-like_dom,smart_Regulat_G_prot_signal_superfam,pfscan_DEP_dom,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS11	HGNC	ENSG00000076344				23	0	0	20	4	16.6667
GRIN2A	0	genome.wustl.edu	37	16	9862888	9862888	+	Silent	SNP	G	G	A			TCGA-BR-4187-01A-01D-1126-08	TCGA-BR-4187-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b45eb56-8286-4094-8bff-d0cf5c05cda9	30a6f1ff-df78-470a-b645-0e46c00252d8	16	9862888	9862888	G	A	SNP	GRIN2A	ENST00000330684	human	ensembl	74_37	-1	known	silent	c.2415	p.N805	0.988	pfam_Iontro_glu_rcpt	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2A	HGNC	ENSG00000183454				83	0	0	106	8	7.01754
NLRP5	0	genome.wustl.edu	37	19	56539525	56539525	+	Silent	SNP	C	C	T			TCGA-BR-4187-01A-01D-1126-08	TCGA-BR-4187-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b45eb56-8286-4094-8bff-d0cf5c05cda9	30a6f1ff-df78-470a-b645-0e46c00252d8	19	56539525	56539525	C	T	SNP	NLRP5	ENST00000390649	human	ensembl	74_37	+1	known	silent	c.1926	p.S642	0.019	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP5	HGNC	ENSG00000171487				54	0	0	65	4	5.7971
SPEG	0	genome.wustl.edu	37	2	220356877	220356877	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4187-01A-01D-1126-08	TCGA-BR-4187-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b45eb56-8286-4094-8bff-d0cf5c05cda9	30a6f1ff-df78-470a-b645-0e46c00252d8	2	220356877	220356877	C	T	SNP	SPEG	ENST00000312358	human	ensembl	74_37	+1	novel	missense	c.9506	p.T3169M	0.990	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	SPEG	HGNC	ENSG00000072195				46	0	0	37	5	11.9048
PLB1	0	genome.wustl.edu	37	2	28785965	28785965	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4187-01A-01D-1126-08	TCGA-BR-4187-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b45eb56-8286-4094-8bff-d0cf5c05cda9	30a6f1ff-df78-470a-b645-0e46c00252d8	2	28785965	28785965	C	T	SNP	PLB1	ENST00000422425	human	ensembl	74_37	+1	known	missense	c.1238	p.T413M	0.963	pfam_Lipase_GDSL	pfam_Lipase_GDSL	-	no_errors	PLB1	HGNC	ENSG00000163803				62	0	0	52	6	10.3448
BMS1P20	0	genome.wustl.edu	37	22	22664698	22664698	+	RNA	SNP	C	C	T			TCGA-BR-4187-01A-01D-1126-08	TCGA-BR-4187-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b45eb56-8286-4094-8bff-d0cf5c05cda9	30a6f1ff-df78-470a-b645-0e46c00252d8	22	22664698	22664698	C	T	SNP	BMS1P20	ENST00000426066	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	BMS1P20	HGNC	ENSG00000236850				36	0	0	37	4	9.7561
FANCD2	0	genome.wustl.edu	37	3	10108898	10108898	+	Silent	SNP	A	A	G			TCGA-BR-4187-01A-01D-1126-08	TCGA-BR-4187-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b45eb56-8286-4094-8bff-d0cf5c05cda9	30a6f1ff-df78-470a-b645-0e46c00252d8	3	10108898	10108898	A	G	SNP	FANCD2	ENST00000287647	human	ensembl	74_37	+1	known	silent	c.2391	p.V797	0.998	NULL	superfamily_ARM-type_fold	-	no_errors	FANCD2	HGNC	ENSG00000144554				30	0	0	34	5	12.8205
MCM2	0	genome.wustl.edu	37	3	127340016	127340016	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4187-01A-01D-1126-08	TCGA-BR-4187-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b45eb56-8286-4094-8bff-d0cf5c05cda9	30a6f1ff-df78-470a-b645-0e46c00252d8	3	127340016	127340016	G	A	SNP	MCM2	ENST00000265056	human	ensembl	74_37	+1	known	missense	c.2549	p.R850H	1.000	NULL	pfam_MCM_DNA-dep_ATPase,pfam_MCM2,pfam_Mg_chelatse_chII,pfam_ATPase_AAA-3,pfam_ATPase_dyneun-rel_AAA,superfamily_NA-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM2,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM2	HGNC	ENSG00000073111				74	0	0	60	7	10.4478
MUC4	0	genome.wustl.edu	37	3	195513420	195513420	+	Silent	SNP	G	G	A			TCGA-BR-4187-01A-01D-1126-08	TCGA-BR-4187-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b45eb56-8286-4094-8bff-d0cf5c05cda9	30a6f1ff-df78-470a-b645-0e46c00252d8	3	195513420	195513420	G	A	SNP	MUC4	ENST00000463781	human	ensembl	74_37	-1	known	silent	c.5031	p.H1677	0.010	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EG-like_dom,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113				33	0	0	31	5	13.8889
SH3TC1	0	genome.wustl.edu	37	4	8235216	8235216	+	Silent	SNP	C	C	T			TCGA-BR-4187-01A-01D-1126-08	TCGA-BR-4187-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b45eb56-8286-4094-8bff-d0cf5c05cda9	30a6f1ff-df78-470a-b645-0e46c00252d8	4	8235216	8235216	C	T	SNP	SH3TC1	ENST00000245105	human	ensembl	74_37	+1	known	silent	c.3258	p.S1086	0.691	NULL	superfamily_SH3_domain,smart_SH3_domain,smart_TPR_repeat,pfscan_SH3_domain	-	no_errors	SH3TC1	HGNC	ENSG00000125089				26	0	0	34	4	10.5263
PCDHA13	0	genome.wustl.edu	37	5	140263466	140263466	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4187-01A-01D-1126-08	TCGA-BR-4187-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b45eb56-8286-4094-8bff-d0cf5c05cda9	30a6f1ff-df78-470a-b645-0e46c00252d8	5	140263466	140263466	G	A	SNP	PCDHA13	ENST00000289272	human	ensembl	74_37	+1	known	missense	c.1613	p.R538H	0.975	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA13	HGNC	ENSG00000239389				81	0	0	70	10	12.5
RPS6KA2	0	genome.wustl.edu	37	6	166844008	166844008	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4187-01A-01D-1126-08	TCGA-BR-4187-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b45eb56-8286-4094-8bff-d0cf5c05cda9	30a6f1ff-df78-470a-b645-0e46c00252d8	6	166844008	166844008	G	A	SNP	RPS6KA2	ENST00000510118	human	ensembl	74_37	-1	known	missense	c.1589	p.S530L	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	RPS6KA2	HGNC	ENSG00000071242				43	0	0	71	8	10.1266
OR2J3	0	genome.wustl.edu	37	6	29079853	29079853	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4187-01A-01D-1126-08	TCGA-BR-4187-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b45eb56-8286-4094-8bff-d0cf5c05cda9	30a6f1ff-df78-470a-b645-0e46c00252d8	6	29079853	29079853	G	A	SNP	OR2J3	ENST00000377169	human	ensembl	74_37	+1	known	missense	c.186	p.M62I	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2J3	HGNC	ENSG00000204701				198	0	0	198	18	8.33333
HLA-J	0	genome.wustl.edu	37	6	29977377	29977377	+	RNA	SNP	C	C	G			TCGA-BR-4187-01A-01D-1126-08	TCGA-BR-4187-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b45eb56-8286-4094-8bff-d0cf5c05cda9	30a6f1ff-df78-470a-b645-0e46c00252d8	6	29977377	29977377	C	G	SNP	HLA-J	ENST00000462773	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	HLA-J	HGNC	ENSG00000204622				32	0	0	48	4	7.69231
HLA-J	0	genome.wustl.edu	37	6	29977409	29977409	+	RNA	SNP	T	T	C			TCGA-BR-4187-01A-01D-1126-08	TCGA-BR-4187-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b45eb56-8286-4094-8bff-d0cf5c05cda9	30a6f1ff-df78-470a-b645-0e46c00252d8	6	29977409	29977409	T	C	SNP	HLA-J	ENST00000462773	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	HLA-J	HGNC	ENSG00000204622				19	0	0	30	6	16.6667
LMTK2	0	genome.wustl.edu	37	7	97766742	97766742	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4187-01A-01D-1126-08	TCGA-BR-4187-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b45eb56-8286-4094-8bff-d0cf5c05cda9	30a6f1ff-df78-470a-b645-0e46c00252d8	7	97766742	97766742	A	C	SNP	LMTK2	ENST00000297293	human	ensembl	74_37	+1	known	missense	c.219	p.E73D	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LMTK2	HGNC	ENSG00000164715				42	0	0	68	4	5.55556
SLC35G5	0	genome.wustl.edu	37	8	11189042	11189042	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4187-01A-01D-1126-08	TCGA-BR-4187-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b45eb56-8286-4094-8bff-d0cf5c05cda9	30a6f1ff-df78-470a-b645-0e46c00252d8	8	11189042	11189042	G	A	SNP	SLC35G5	ENST00000382435	human	ensembl	74_37	+1	known	missense	c.427	p.A143T	0.970	pfam_DMT	pfam_DMT	-	no_errors	SLC35G5	HGNC	ENSG00000177710				166	0	0	202	15	6.91244
TAF1L	0	genome.wustl.edu	37	9	32630718	32630718	+	Silent	SNP	G	G	A			TCGA-BR-4187-01A-01D-1126-08	TCGA-BR-4187-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b45eb56-8286-4094-8bff-d0cf5c05cda9	30a6f1ff-df78-470a-b645-0e46c00252d8	9	32630718	32630718	G	A	SNP	TAF1L	ENST00000242310	human	ensembl	74_37	-1	known	silent	c.4860	p.Y1620	0.967	pirsf_TAF1_animal,superfamily_Bromodomain,smart_Bromodomain	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728				109	0	0	116	10	7.93651
FRMPD1	0	genome.wustl.edu	37	9	37711391	37711391	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4187-01A-01D-1126-08	TCGA-BR-4187-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b45eb56-8286-4094-8bff-d0cf5c05cda9	30a6f1ff-df78-470a-b645-0e46c00252d8	9	37711391	37711391	C	T	SNP	FRMPD1	ENST00000377765	human	ensembl	74_37	+1	known	missense	c.407	p.S136L	1.000	superfamily_PDZ	pfam_FERM_central,pfam_PDZ,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ	-	no_errors	FRMPD1	HGNC	ENSG00000070601				191	0	0	175	10	5.40541
LOC100996870	0	genome.wustl.edu	37	9	66459863	66459863	+	RNA	SNP	G	G	A			TCGA-BR-4187-01A-01D-1126-08	TCGA-BR-4187-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b45eb56-8286-4094-8bff-d0cf5c05cda9	30a6f1ff-df78-470a-b645-0e46c00252d8	9	66459863	66459863	G	A	SNP	LOC100996870	ENST00000424345	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.135	-	-	-	no_errors	RP11-262H14.1	Clone_based_vega_gene	ENSG00000238113				35	0	0	47	5	9.61538
LOC100996870	0	genome.wustl.edu	37	9	66465815	66465815	+	RNA	SNP	C	C	T			TCGA-BR-4187-01A-01D-1126-08	TCGA-BR-4187-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b45eb56-8286-4094-8bff-d0cf5c05cda9	30a6f1ff-df78-470a-b645-0e46c00252d8	9	66465815	66465815	C	T	SNP	LOC100996870	ENST00000424345	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.146	-	-	-	no_errors	RP11-262H14.1	Clone_based_vega_gene	ENSG00000238113				14	0	0	26	3	10.3448
LOC100996870	0	genome.wustl.edu	37	9	66465820	66465820	+	RNA	SNP	T	T	A			TCGA-BR-4187-01A-01D-1126-08	TCGA-BR-4187-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b45eb56-8286-4094-8bff-d0cf5c05cda9	30a6f1ff-df78-470a-b645-0e46c00252d8	9	66465820	66465820	T	A	SNP	LOC100996870	ENST00000424345	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.158	-	-	-	no_errors	RP11-262H14.1	Clone_based_vega_gene	ENSG00000238113				13	0	0	25	3	10.7143
LOC100996870	0	genome.wustl.edu	37	9	66466237	66466237	+	RNA	SNP	C	C	G			TCGA-BR-4187-01A-01D-1126-08	TCGA-BR-4187-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b45eb56-8286-4094-8bff-d0cf5c05cda9	30a6f1ff-df78-470a-b645-0e46c00252d8	9	66466237	66466237	C	G	SNP	LOC100996870	ENST00000424345	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP11-262H14.1	Clone_based_vega_gene	ENSG00000238113				38	0	0	36	7	16.2791
MT-RNR2	0	genome.wustl.edu	37	MT	2656	2656	+	RNA	SNP	T	T	C			TCGA-BR-4187-01A-01D-1126-08	TCGA-BR-4187-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b45eb56-8286-4094-8bff-d0cf5c05cda9	30a6f1ff-df78-470a-b645-0e46c00252d8	MT	2656	2656	T	C	SNP	MT-RNR2	ENST00000387347	human	ensembl	74_37	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors	MT-RNR2	HGNC	ENSG00000210082				1230	1	0.0812348	903	108	10.6825
SLC9A6	0	genome.wustl.edu	37	X	135084305	135084305	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4187-01A-01D-1126-08	TCGA-BR-4187-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b45eb56-8286-4094-8bff-d0cf5c05cda9	30a6f1ff-df78-470a-b645-0e46c00252d8	X	135084305	135084305	G	T	SNP	SLC9A6	ENST00000370695	human	ensembl	74_37	+1	known	missense	c.832	p.V278F	1.000	pfam_Cation/H_exchanger,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_Na/H_exchanger_6,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A6	HGNC	ENSG00000198689				71	0	0	72	16	18.1818
UBXN7	0	genome.wustl.edu	37	3	196120448	196120448	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4187-01A-01D-1126-08	TCGA-BR-4187-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b45eb56-8286-4094-8bff-d0cf5c05cda9	30a6f1ff-df78-470a-b645-0e46c00252d8	3	196120448	196120448	A	-	DEL	UBXN7	ENST00000296328	human	ensembl	74_37	-1	known	frame_shift_del	c.332	p.F111fs	1.000	pirsf_UCP037991_UAS/UBX	pfam_UBX,superfamily_UBA-like,smart_UAS,smart_UBX,pirsf_UCP037991_UAS/UBX,pfscan_UBX	-	no_errors	UBXN7	HGNC	ENSG00000163960				167	0	0	118	9	7.08661
