Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
FLG2	0	genome.wustl.edu	37	1	152325465	152325465	+	Silent	SNP	G	G	A			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	1	152325465	152325465	G	A	SNP	FLG2	ENST00000388718	human	ensembl	74_37	-1	known	silent	c.4797	p.Y1599	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG2	HGNC	ENSG00000143520				297	2	0.668896	146	33	18.4358
RASAL2	0	genome.wustl.edu	37	1	178426964	178426964	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	1	178426964	178426964	G	A	SNP	RASAL2	ENST00000367649	human	ensembl	74_37	+1	known	missense	c.2537	p.R846Q	1.000	pfam_DUF3498	pfam_DUF3498,pfam_RasGAP,pfam_Pleckstrin_homology,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,superfamily_PP1_inhibitor,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	RASAL2	HGNC	ENSG00000075391				94	0	0	55	14	20.2899
TACC2	0	genome.wustl.edu	37	10	123976316	123976316	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	10	123976316	123976316	G	A	SNP	TACC2	ENST00000334433	human	ensembl	74_37	+1	known	missense	c.7519	p.E2507K	1.000	NULL	pfam_TACC	-	no_errors	TACC2	HGNC	ENSG00000138162				106	0	0	61	14	18.6667
DMBT1	0	genome.wustl.edu	37	10	124402642	124402642	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	10	124402642	124402642	G	A	SNP	DMBT1	ENST00000338354	human	ensembl	74_37	+1	known	missense	c.6970	p.V2324M	0.000	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom	pfam_SRCR,pfam_CUB_dom,pfam_ZP_dom,superfamily_Srcr_rcpt-rel,superfamily_CUB_dom,smart_Srcr_rcpt-rel,smart_CUB_dom,smart_ZP_dom,pfscan_CUB_dom,pfscan_SRCR,pfscan_ZP_dom,prints_SRCR	-	no_errors	DMBT1	HGNC	ENSG00000187908				117	0	0	55	10	15.3846
GRID1	0	genome.wustl.edu	37	10	88123850	88123850	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	10	88123850	88123850	G	A	SNP	GRID1	ENST00000327946	human	ensembl	74_37	-1	known	missense	c.83	p.A28V	1.000	superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRID1	HGNC	ENSG00000182771				57	0	0	34	4	10.5263
DCDC1	0	genome.wustl.edu	37	11	31115643	31115643	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	11	31115643	31115643	G	A	SNP	DCDC1	ENST00000597505	human	ensembl	74_37	-1	putative	missense	c.2072	p.A691V	0.000	superfamily_Ricin_B_lectin	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Doublecortin_dom,pfscan_Doublecortin_dom,pfscan_Ricin_B_lectin	-	no_errors	DCDC1	HGNC	ENSG00000170959				95	0	0	75	16	17.5824
OR5L1	0	genome.wustl.edu	37	11	55579431	55579431	+	Silent	SNP	T	T	C			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	11	55579431	55579431	T	C	SNP	OR5L1	ENST00000333973	human	ensembl	74_37	+1	known	silent	c.489	p.A163	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5L1	HGNC	ENSG00000186117				218	0	0	126	34	21.25
RSF1	0	genome.wustl.edu	37	11	77386245	77386245	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	11	77386245	77386245	G	A	SNP	RSF1	ENST00000308488	human	ensembl	74_37	-1	known	missense	c.3398	p.P1133L	0.981	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	RSF1	HGNC	ENSG00000048649				51	0	0	31	8	20.5128
TPCN1	0	genome.wustl.edu	37	12	113730792	113730792	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	12	113730792	113730792	G	A	SNP	TPCN1	ENST00000541517	human	ensembl	74_37	+1	known	missense	c.2383	p.V795I	0.001	NULL	pfam_Ion_trans_dom	-	no_errors	TPCN1	HGNC	ENSG00000186815				63	0	0	40	11	21.5686
KCNA1	0	genome.wustl.edu	37	12	5021267	5021267	+	Silent	SNP	C	C	T			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	12	5021267	5021267	C	T	SNP	KCNA1	ENST00000382545	human	ensembl	74_37	+1	known	silent	c.723	p.F241	1.000	pfam_Ion_trans_dom,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv1.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv1.3	-	no_errors	KCNA1	HGNC	ENSG00000111262				90	0	0	44	12	21.4286
PEX5	0	genome.wustl.edu	37	12	7361645	7361645	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	12	7361645	7361645	G	A	SNP	PEX5	ENST00000434354	human	ensembl	74_37	+1	known	missense	c.1484	p.R495Q	0.819	pfscan_TPR-contain_dom	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	PEX5	HGNC	ENSG00000139197				116	0	0	49	19	27.9412
PLXNC1	0	genome.wustl.edu	37	12	94654549	94654549	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	12	94654549	94654549	G	A	SNP	PLXNC1	ENST00000258526	human	ensembl	74_37	+1	known	missense	c.3383	p.R1128H	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Plexin_repeat,pfam_IPT,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Plexin-like_fold,superfamily_Ig_E-set,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNC1	HGNC	ENSG00000136040				63	0	0	49	9	15.5172
NBEA	0	genome.wustl.edu	37	13	36241608	36241608	+	Silent	SNP	C	C	T			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	13	36241608	36241608	C	T	SNP	NBEA	ENST00000310336	human	ensembl	74_37	+1	known	silent	c.8499	p.S2833	0.907	superfamily_WD40_repeat_dom	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl_sf,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat_dom	-	no_errors	NBEA	HGNC	ENSG00000172915				164	0	0	122	25	17.0068
MYCBP2	0	genome.wustl.edu	37	13	77780921	77780921	+	Silent	SNP	C	C	T			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	13	77780921	77780921	C	T	SNP	MYCBP2	ENST00000407578	human	ensembl	74_37	-1	known	silent	c.3456	p.A1152	0.118	superfamily_ARM-type_fold	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_RCC1/BLIP-II,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810				39	0	0	29	7	19.4444
AHNAK2	0	genome.wustl.edu	37	14	105418481	105418481	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	14	105418481	105418481	C	T	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	missense	c.3307	p.V1103I	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				238	0	0	117	33	22
ATG14	0	genome.wustl.edu	37	14	55864146	55864146	+	Silent	SNP	G	G	A			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	14	55864146	55864146	G	A	SNP	ATG14	ENST00000247178	human	ensembl	74_37	-1	known	silent	c.228	p.I76	0.923	NULL	pfam_UV_resistance/autophagy_Atg14	-	no_errors	ATG14	HGNC	ENSG00000126775				49	0	0	33	10	23.2558
NDN	0	genome.wustl.edu	37	15	23931922	23931922	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	15	23931922	23931922	G	C	SNP	NDN	ENST00000331837	human	ensembl	74_37	-1	known	missense	c.443	p.A148G	0.698	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	NDN	HGNC	ENSG00000182636				32	0	0	32	4	11.1111
UNC45A	0	genome.wustl.edu	37	15	91491480	91491480	+	Silent	SNP	G	G	A			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	15	91491480	91491480	G	A	SNP	UNC45A	ENST00000418476	human	ensembl	74_37	+1	known	silent	c.1704	p.A568	0.990	superfamily_ARM-type_fold	pfam_UNC-45/Ring3,superfamily_ARM-type_fold,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	UNC45A	HGNC	ENSG00000140553				100	1	0.990099	53	14	20.8955
HS3ST2	0	genome.wustl.edu	37	16	22926408	22926408	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	16	22926408	22926408	G	A	SNP	HS3ST2	ENST00000261374	human	ensembl	74_37	+1	known	missense	c.629	p.R210H	0.908	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	HS3ST2	HGNC	ENSG00000122254				118	0	0	92	15	14.0187
SALL1	0	genome.wustl.edu	37	16	51174297	51174297	+	Silent	SNP	G	G	A			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	16	51174297	51174297	G	A	SNP	SALL1	ENST00000251020	human	ensembl	74_37	-1	known	silent	c.1836	p.A612	0.013	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL1	HGNC	ENSG00000103449				41	0	0	17	5	22.7273
CDH1	0	genome.wustl.edu	37	16	68842699	68842699	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	16	68842699	68842699	G	A	SNP	CDH1	ENST00000261769	human	ensembl	74_37	+1	known	missense	c.635	p.G212E	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068				73	0	0	39	8	17.0213
VAT1L	0	genome.wustl.edu	37	16	77918562	77918562	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	16	77918562	77918562	G	A	SNP	VAT1L	ENST00000302536	human	ensembl	74_37	+1	known	missense	c.940	p.A314T	1.000	smart_PKS_ER	pfam_ADH_GroES-like,pfam_ADH_C,superfamily_GroES-like,smart_PKS_ER	-	no_errors	VAT1L	HGNC	ENSG00000171724				31	0	0	10	6	37.5
DNAH9	0	genome.wustl.edu	37	17	11651040	11651040	+	Silent	SNP	G	G	A			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	17	11651040	11651040	G	A	SNP	DNAH9	ENST00000262442	human	ensembl	74_37	+1	known	silent	c.6567	p.E2189	0.973	pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174				60	0	0	37	8	17.7778
LOC440416	0	genome.wustl.edu	37	17	20805576	20805576	+	RNA	SNP	C	C	T			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	17	20805576	20805576	C	T	SNP	LOC440416	ENST00000577537	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-344E13.3	Clone_based_vega_gene	ENSG00000233098				151	0	0	87	16	15.534
MYO1D	0	genome.wustl.edu	37	17	30932222	30932222	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	17	30932222	30932222	A	G	SNP	MYO1D	ENST00000318217	human	ensembl	74_37	-1	known	missense	c.2747	p.L916P	1.000	pfam_Myosin_tail_2	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO1D	HGNC	ENSG00000176658				66	0	0	33	12	26.6667
KRT16	0	genome.wustl.edu	37	17	39767374	39767374	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	17	39767374	39767374	C	T	SNP	KRT16	ENST00000301653	human	ensembl	74_37	-1	known	missense	c.880	p.E294K	0.998	pfam_IF,superfamily_Prefoldin	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT16	HGNC	ENSG00000186832				143	0	0	80	16	16.6667
KRT16	0	genome.wustl.edu	37	17	39767456	39767456	+	Silent	SNP	G	G	A			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	17	39767456	39767456	G	A	SNP	KRT16	ENST00000301653	human	ensembl	74_37	-1	known	silent	c.798	p.T266	0.002	pfam_IF,superfamily_Prefoldin	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT16	HGNC	ENSG00000186832				74	0	0	36	6	14.2857
GP1BA	0	genome.wustl.edu	37	17	4835962	4835962	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	17	4835962	4835962	G	T	SNP	GP1BA	ENST00000329125	human	ensembl	74_37	+1	known	missense	c.63	p.E21D	0.002	pfam_LRR-contain_N,smart_LRR-contain_N	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	GP1BA	HGNC	ENSG00000185245				153	0	0	87	17	16.3462
TANC2	0	genome.wustl.edu	37	17	61498701	61498701	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	17	61498701	61498701	C	G	SNP	TANC2	ENST00000424789	human	ensembl	74_37	+1	known	missense	c.5358	p.S1786R	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC2	HGNC	ENSG00000170921				103	1	0.961538	49	12	19.6721
RGS9	0	genome.wustl.edu	37	17	63221358	63221358	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	17	63221358	63221358	G	A	SNP	RGS9	ENST00000262406	human	ensembl	74_37	+1	known	missense	c.1646	p.R549H	0.000	NULL	pfam_RGS_dom,pfam_G-protein_gamma-like_dom,pfam_DEP_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_G-protein_gamma-like_dom,smart_DEP_dom,smart_G-protein_gamma-like_dom,smart_Regulat_G_prot_signal_superfam,pfscan_DEP_dom,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS9	HGNC	ENSG00000108370				58	0	0	43	11	20.3704
MALT1	0	genome.wustl.edu	37	18	56376642	56376642	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	18	56376642	56376642	C	T	SNP	MALT1	ENST00000348428	human	ensembl	74_37	+1	known	nonsense	c.682	p.Q228*	1.000	pfscan_Ig-like_dom	pfam_Pept_C14_caspase,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_DEATH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Pept_C14_ICE_p20,pfscan_Ig-like_dom	-	no_errors	MALT1	HGNC	ENSG00000172175				99	0	0	52	10	16.129
RLN3	0	genome.wustl.edu	37	19	14139122	14139122	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	19	14139122	14139122	G	A	SNP	RLN3	ENST00000431365	human	ensembl	74_37	+1	known	missense	c.106	p.G36S	1.000	pfam_Insulin-like,superfamily_Insulin-like,smart_Insulin-like,prints_Insulin_family	pfam_Insulin-like,superfamily_Insulin-like,smart_Insulin-like,prints_Insulin_family	-	no_errors	RLN3	HGNC	ENSG00000171136				63	0	0	26	5	16.129
KMT2B	0	genome.wustl.edu	37	19	36221615	36221615	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	19	36221615	36221615	C	T	SNP	KMT2B	ENST00000222270	human	ensembl	74_37	+1	known	missense	c.5284	p.R1762C	1.000	pirsf_MeTrfase_trithorax,pfam_FYrich_N,smart_FYrich_N	pirsf_MeTrfase_trithorax,pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KMT2B	Uniprot_gn	ENSG00000272333				87	0	0	46	11	19.2982
PSG8	0	genome.wustl.edu	37	19	43262204	43262204	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	19	43262204	43262204	C	T	SNP	PSG8	ENST00000306511	human	ensembl	74_37	-1	known	missense	c.659	p.R220Q	0.004	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PSG8	HGNC	ENSG00000124467				345	0	0	192	47	19.6653
CRX	0	genome.wustl.edu	37	19	48343048	48343048	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	19	48343048	48343048	G	A	SNP	CRX	ENST00000221996	human	ensembl	74_37	+1	known	missense	c.724	p.V242M	0.465	pfam_Otx_TF_C	pfam_Homeobox_dom,pfam_Otx_TF_C,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	CRX	HGNC	ENSG00000105392				101	1	0.980392	73	12	14.1176
LILRA6	0	genome.wustl.edu	37	19	54745496	54745496	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	19	54745496	54745496	C	T	SNP	LILRA6	ENST00000270464	human	ensembl	74_37	-1	known	missense	c.614	p.R205Q	0.036	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LILRA6	HGNC	ENSG00000244482				121	0	0	65	10	13.3333
AURKC	0	genome.wustl.edu	37	19	57743416	57743416	+	Silent	SNP	C	C	T			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	19	57743416	57743416	C	T	SNP	AURKC	ENST00000302804	human	ensembl	74_37	+1	known	silent	c.120	p.V40	0.543	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	AURKC	HGNC	ENSG00000105146				48	0	0	28	9	24.3243
RAPGEF4	0	genome.wustl.edu	37	2	173679118	173679118	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	2	173679118	173679118	C	T	SNP	RAPGEF4	ENST00000397081	human	ensembl	74_37	+1	known	missense	c.409	p.R137C	1.000	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	pfam_RasGRF_CDC25,pfam_cNMP-bd_dom,pfam_DEP_dom,pfam_Ras-like_Gua-exchang_fac_N,pfam_Ras-assoc,superfamily_Ras_GEF_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_DEP_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_DEP_dom,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N,prints_cAMP/cGMP_kin	-	no_errors	RAPGEF4	HGNC	ENSG00000091428				89	0	0	36	17	32.0755
TTN	0	genome.wustl.edu	37	2	179429737	179429737	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	2	179429737	179429737	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.73418	p.T24473M	0.209	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				126	0	0	63	23	26.7442
ANKRD44	0	genome.wustl.edu	37	2	197878392	197878392	+	Silent	SNP	C	C	T			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	2	197878392	197878392	C	T	SNP	ANKRD44	ENST00000328737	human	ensembl	74_37	-1	known	silent	c.1692	p.S564	0.008	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD44	HGNC	ENSG00000065413				211	0	0	172	29	14.4279
NDUFA10	0	genome.wustl.edu	37	2	240921615	240921615	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	2	240921615	240921615	G	A	SNP	NDUFA10	ENST00000404554	human	ensembl	74_37	-1	novel	missense	c.1021	p.R341W	0.000	pirsf_NADH_UbQ_OxRdtase_42KD_su	pfam_Deoxynucleoside_kinase,superfamily_P-loop_NTPase,pirsf_NADH_UbQ_OxRdtase_42KD_su	-	no_errors	NDUFA10	HGNC	ENSG00000130414				86	0	0	51	13	20.3125
LTBP1	0	genome.wustl.edu	37	2	33572560	33572560	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	2	33572560	33572560	G	A	SNP	LTBP1	ENST00000354476	human	ensembl	74_37	+1	known	missense	c.3986	p.R1329H	1.000	smart_EGF-like_Ca-bd_dom,smart_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	LTBP1	HGNC	ENSG00000049323				71	0	0	52	9	14.7541
LHCGR	0	genome.wustl.edu	37	2	48915521	48915521	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	2	48915521	48915521	A	G	SNP	LHCGR	ENST00000294954	human	ensembl	74_37	-1	known	missense	c.1415	p.I472T	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_LSH_rcpt,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn,prints_TSH_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	LHCGR	HGNC	ENSG00000138039				88	0	0	54	18	25
LRRTM1	0	genome.wustl.edu	37	2	80529646	80529646	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	2	80529646	80529646	C	A	SNP	LRRTM1	ENST00000295057	human	ensembl	74_37	-1	known	missense	c.1299	p.M433I	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM1	HGNC	ENSG00000162951				53	0	0	24	8	25
CTNNA2	0	genome.wustl.edu	37	2	80835315	80835315	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	2	80835315	80835315	G	T	SNP	CTNNA2	ENST00000361291	human	ensembl	74_37	+1	known	missense	c.2404	p.D802Y	1.000	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Vinculin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA2	HGNC	ENSG00000066032				64	0	0	71	13	15.4762
TTLL9	0	genome.wustl.edu	37	20	30521649	30521649	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	20	30521649	30521649	C	T	SNP	TTLL9	ENST00000375934	human	ensembl	74_37	+1	known	missense	c.698	p.T233I	1.000	NULL	pfam_TTL/TTLL_fam	-	no_errors	TTLL9	HGNC	ENSG00000131044				37	0	0	25	6	19.3548
PDE9A	0	genome.wustl.edu	37	21	44151921	44151921	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	21	44151921	44151921	G	T	SNP	PDE9A	ENST00000291539	human	ensembl	74_37	+1	known	missense	c.304	p.A102S	0.002	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE9A	HGNC	ENSG00000160191				101	0	0	47	12	20.339
AGPAT3	0	genome.wustl.edu	37	21	45390580	45390580	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	21	45390580	45390580	G	A	SNP	AGPAT3	ENST00000291572	human	ensembl	74_37	+1	known	missense	c.557	p.R186H	0.951	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase	-	no_errors	AGPAT3	HGNC	ENSG00000160216				33	0	0	35	11	23.913
COL6A2	0	genome.wustl.edu	37	21	47549137	47549137	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	21	47549137	47549137	C	T	SNP	COL6A2	ENST00000357838	human	ensembl	74_37	+1	known	missense	c.2489	p.P830L	0.973	NULL	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A2	HGNC	ENSG00000142173				56	0	0	38	7	15.5556
C3orf20	0	genome.wustl.edu	37	3	14731512	14731512	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	3	14731512	14731512	G	A	SNP	C3orf20	ENST00000253697	human	ensembl	74_37	+1	known	missense	c.634	p.A212T	0.000	NULL	NULL	-	no_errors	C3orf20	HGNC	ENSG00000131379				104	0	0	50	11	18.0328
KLHL24	0	genome.wustl.edu	37	3	183368716	183368716	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	3	183368716	183368716	C	T	SNP	KLHL24	ENST00000242810	human	ensembl	74_37	+1	known	missense	c.572	p.A191V	1.000	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL24	HGNC	ENSG00000114796				104	0	0	75	16	17.5824
ECE2	0	genome.wustl.edu	37	3	184005662	184005662	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	3	184005662	184005662	C	T	SNP	ECE2	ENST00000402825	human	ensembl	74_37	+1	known	missense	c.1655	p.T552M	1.000	pfam_Peptidase_M13_N	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,pfam_Methyltransf_11,prints_Peptidase_M13_C	-	no_errors	ECE2	HGNC	ENSG00000145194				82	0	0	62	11	15.0685
CTNNB1	0	genome.wustl.edu	37	3	41277254	41277254	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	3	41277254	41277254	G	A	SNP	CTNNB1	ENST00000349496	human	ensembl	74_37	+1	known	missense	c.1723	p.G575R	1.000	superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,prints_Beta-catenin	-	no_errors	CTNNB1	HGNC	ENSG00000168036				99	0	0	78	13	14.2857
NBEAL2	0	genome.wustl.edu	37	3	47049627	47049627	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	3	47049627	47049627	G	A	SNP	NBEAL2	ENST00000450053	human	ensembl	74_37	+1	known	missense	c.7670	p.S2557N	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL2	HGNC	ENSG00000160796				46	0	0	20	3	13.0435
RHOA	0	genome.wustl.edu	37	3	49412898	49412898	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	3	49412898	49412898	T	C	SNP	RHOA	ENST00000418115	human	ensembl	74_37	-1	known	missense	c.125	p.Y42C	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHOA	HGNC	ENSG00000067560				99	0	0	44	34	43.5897
LRIG1	0	genome.wustl.edu	37	3	66457882	66457882	+	Silent	SNP	G	G	A			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	3	66457882	66457882	G	A	SNP	LRIG1	ENST00000273261	human	ensembl	74_37	-1	known	silent	c.969	p.D323	0.006	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Cys-rich_flank_reg_C,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRIG1	HGNC	ENSG00000144749				42	0	0	21	4	16
TACR3	0	genome.wustl.edu	37	4	104640553	104640553	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	4	104640553	104640553	C	T	SNP	TACR3	ENST00000304883	human	ensembl	74_37	-1	known	missense	c.280	p.V94M	0.014	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_NK3_rcpt,prints_Neurokn_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt,prints_NK1_rcpt	-	no_errors	TACR3	HGNC	ENSG00000169836				60	0	0	30	9	23.0769
PCDH10	0	genome.wustl.edu	37	4	134072680	134072680	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	4	134072680	134072680	G	A	SNP	PCDH10	ENST00000264360	human	ensembl	74_37	+1	known	missense	c.1385	p.R462H	1.000	superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650				70	0	0	37	11	22.9167
FSTL5	0	genome.wustl.edu	37	4	162577523	162577523	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	4	162577523	162577523	C	T	SNP	FSTL5	ENST00000306100	human	ensembl	74_37	-1	known	missense	c.851	p.R284K	0.994	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Kazal_dom,pfam_Ig_V-set,smart_Kazal_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_EF_hand_dom,pfscan_Ig-like_dom	-	no_errors	FSTL5	HGNC	ENSG00000168843				37	0	0	36	2	5.26316
EVC2	0	genome.wustl.edu	37	4	5642365	5642365	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	4	5642365	5642365	C	T	SNP	EVC2	ENST00000344408	human	ensembl	74_37	-1	known	missense	c.1346	p.R449Q	1.000	pfam_Limbin	pfam_Limbin	-	no_errors	EVC2	HGNC	ENSG00000173040				275	2	0.722022	133	31	18.9024
PRKG2	0	genome.wustl.edu	37	4	82125924	82125924	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	4	82125924	82125924	G	A	SNP	PRKG2	ENST00000264399	human	ensembl	74_37	-1	known	missense	c.278	p.P93L	0.050	pirsf_cGMP-dependent_protein_kinase	pfam_Prot_kinase_dom,pfam_cNMP-bd_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_cGMP-dependent_protein_kinase,pfscan_cNMP-bd_dom,pfscan_Prot_kinase_dom,prints_cGMP_dep_kinase,prints_cAMP/cGMP_kin	-	no_errors	PRKG2	HGNC	ENSG00000138669				130	0	0	79	13	14.1304
DMXL1	0	genome.wustl.edu	37	5	118469231	118469231	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	5	118469231	118469231	G	A	SNP	DMXL1	ENST00000539542	human	ensembl	74_37	+1	known	missense	c.1612	p.D538N	1.000	superfamily_WD40_repeat_dom	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL1	HGNC	ENSG00000172869				108	0	0	68	17	20
FSTL4	0	genome.wustl.edu	37	5	132535203	132535203	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	5	132535203	132535203	C	T	SNP	FSTL4	ENST00000265342	human	ensembl	74_37	-1	known	missense	c.2113	p.A705T	0.255	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Kazal_dom,smart_Kazal_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_EF_hand_dom,pfscan_Ig-like_dom	-	no_errors	FSTL4	HGNC	ENSG00000053108				48	0	0	23	11	32.3529
DNAH5	0	genome.wustl.edu	37	5	13776589	13776589	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	5	13776589	13776589	A	G	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	missense	c.9332	p.I3111T	1.000	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				173	1	0.574713	123	25	16.8919
PCDHA3	0	genome.wustl.edu	37	5	140182827	140182827	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	5	140182827	140182827	C	T	SNP	PCDHA3	ENST00000522353	human	ensembl	74_37	+1	known	missense	c.2045	p.A682V	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA3	HGNC	ENSG00000255408				74	0	0	31	7	18.4211
PCDHAC1	0	genome.wustl.edu	37	5	140307641	140307641	+	Silent	SNP	G	G	A			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	5	140307641	140307641	G	A	SNP	PCDHAC1	ENST00000253807	human	ensembl	74_37	+1	known	silent	c.1164	p.T388	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHAC1	HGNC	ENSG00000248383				48	0	0	28	7	20
FAT2	0	genome.wustl.edu	37	5	150928895	150928895	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	5	150928895	150928895	G	A	SNP	FAT2	ENST00000261800	human	ensembl	74_37	-1	known	missense	c.4750	p.R1584W	0.996	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570				27	0	0	16	4	20
GCM2	0	genome.wustl.edu	37	6	10876693	10876693	+	Silent	SNP	G	G	A			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	6	10876693	10876693	G	A	SNP	GCM2	ENST00000379491	human	ensembl	74_37	-1	known	silent	c.441	p.N147	0.387	pfam_Tscrpt_reg_GCM_motif,superfamily_Tscrpt_reg_GCM_motif,pfscan_Tscrpt_reg_GCM_motif	pfam_Tscrpt_reg_GCM_motif,superfamily_Tscrpt_reg_GCM_motif,pfscan_Tscrpt_reg_GCM_motif	-	no_errors	GCM2	HGNC	ENSG00000124827				56	0	0	57	8	12.3077
THEMIS	0	genome.wustl.edu	37	6	128134866	128134866	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	6	128134866	128134866	A	G	SNP	THEMIS	ENST00000543064	human	ensembl	74_37	-1	known	missense	c.920	p.I307T	1.000	NULL	NULL	-	no_errors	THEMIS	HGNC	ENSG00000172673				109	1	0.909091	61	13	17.5676
GRM1	0	genome.wustl.edu	37	6	146755675	146755675	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	6	146755675	146755675	G	A	SNP	GRM1	ENST00000282753	human	ensembl	74_37	+1	known	missense	c.3328	p.V1110M	0.836	NULL	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Metabotropic_Glu_rcpt_Homer-bd,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3_mtglu_rcpt_1,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_5	-	no_errors	GRM1	HGNC	ENSG00000152822				80	0	0	56	13	18.8406
RABL5	0	genome.wustl.edu	37	7	100959744	100959744	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	7	100959744	100959744	G	A	SNP	RABL5	ENST00000315322	human	ensembl	74_37	-1	known	missense	c.286	p.R96W	1.000	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,pfam_MIRO-like,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase	-	no_errors	RABL5	HGNC	ENSG00000128581				128	0	0	68	12	15
KCNV1	0	genome.wustl.edu	37	8	110986297	110986297	+	Silent	SNP	C	C	T			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	8	110986297	110986297	C	T	SNP	KCNV1	ENST00000297404	human	ensembl	74_37	-1	known	silent	c.321	p.S107	0.595	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv4	pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv8,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv4	-	no_errors	KCNV1	HGNC	ENSG00000164794				19	0	0	9	4	30.7692
CSMD3	0	genome.wustl.edu	37	8	113564865	113564865	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	8	113564865	113564865	C	T	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	missense	c.4319	p.R1440H	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				53	0	0	32	7	17.9487
NEFL	0	genome.wustl.edu	37	8	24811294	24811294	+	RNA	SNP	G	G	A			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	8	24811294	24811294	G	A	SNP	NEFL	ENST00000221169	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.181	-	-	-	no_errors	NEFL	HGNC	ENSG00000104725				26	0	0	17	4	19.0476
YTHDF3	0	genome.wustl.edu	37	8	64098993	64098993	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	8	64098993	64098993	C	T	SNP	YTHDF3	ENST00000539294	human	ensembl	74_37	+1	known	nonsense	c.421	p.Q141*	1.000	NULL	pfam_YTH_domain,pfscan_YTH_domain	-	no_errors	YTHDF3	HGNC	ENSG00000185728				76	0	0	52	4	7.14286
TNC	0	genome.wustl.edu	37	9	117849383	117849383	+	Silent	SNP	G	G	A			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	9	117849383	117849383	G	A	SNP	TNC	ENST00000350763	human	ensembl	74_37	-1	known	silent	c.627	p.D209	0.174	pfam_EGF_extracell,smart_EG-like_dom	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNC	HGNC	ENSG00000041982				79	0	0	34	7	17.0732
ZNF79	0	genome.wustl.edu	37	9	130206310	130206310	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	9	130206310	130206310	T	C	SNP	ZNF79	ENST00000342483	human	ensembl	74_37	+1	known	missense	c.331	p.W111R	0.683	NULL	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF79	HGNC	ENSG00000196152				88	0	0	63	15	19.2308
FREM1	0	genome.wustl.edu	37	9	14770699	14770699	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	9	14770699	14770699	C	T	SNP	FREM1	ENST00000380881	human	ensembl	74_37	-1	known	missense	c.4966	p.V1656M	0.009	NULL	pfam_C-type_lectin,pfam_Calx_beta,superfamily_C-type_lectin_fold,superfamily_Cadherin-like,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	FREM1	HGNC	ENSG00000164946				42	0	0	29	4	12.1212
AMOT	0	genome.wustl.edu	37	X	112035098	112035098	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	X	112035098	112035098	G	A	SNP	AMOT	ENST00000371959	human	ensembl	74_37	-1	known	nonsense	c.1888	p.R630*	0.789	pfam_Angiomotin_C	pfam_Angiomotin_C,superfamily_Prefoldin,prints_Angiomotin	-	no_errors	AMOT	HGNC	ENSG00000126016				160	0	0	95	12	11.215
THOC2	0	genome.wustl.edu	37	X	122755146	122755146	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	X	122755146	122755146	C	G	SNP	THOC2	ENST00000245838	human	ensembl	74_37	-1	known	missense	c.4078	p.E1360Q	1.000	NULL	pfam_THO_THOC2_C,pfam_THO_THOC2_N	-	no_errors	THOC2	HGNC	ENSG00000125676				179	0	0	117	20	14.5985
DCAF12L2	0	genome.wustl.edu	37	X	125299117	125299117	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	X	125299117	125299117	T	C	SNP	DCAF12L2	ENST00000360028	human	ensembl	74_37	-1	known	missense	c.791	p.K264R	0.584	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF12L2	HGNC	ENSG00000198354				47	0	0	33	11	25
GPR101	0	genome.wustl.edu	37	X	136113194	136113194	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	X	136113194	136113194	C	T	SNP	GPR101	ENST00000298110	human	ensembl	74_37	-1	known	missense	c.640	p.V214M	0.990	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR101	HGNC	ENSG00000165370				114	0	0	51	11	17.7419
PLXNB3	0	genome.wustl.edu	37	X	153043007	153043007	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	X	153043007	153043007	G	A	SNP	PLXNB3	ENST00000538966	human	ensembl	74_37	+1	known	missense	c.5194	p.D1732N	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Plexin_repeat,pfam_Semap_dom,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNB3	HGNC	ENSG00000198753				103	0	0	51	21	29.1667
MECP2	0	genome.wustl.edu	37	X	153297980	153297980	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	X	153297980	153297980	G	C	SNP	MECP2	ENST00000303391	human	ensembl	74_37	-1	known	missense	c.55	p.Q19E	1.000	pirsf_Me_CpG-bd_MeCP2	pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_dom,superfamily_Ig_E-set,smart_Methyl_CpG_DNA-bd,pirsf_Me_CpG-bd_MeCP2,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MECP2	HGNC	ENSG00000169057				152	0	0	70	17	19.5402
SNORA36A	0	genome.wustl.edu	37	X	153996856	153996856	+	RNA	SNP	T	T	A			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	X	153996856	153996856	T	A	SNP	SNORA36A	ENST00000384221	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SNORA36A	HGNC	ENSG00000206948				133	0	0	90	15	14.2857
AKAP4	0	genome.wustl.edu	37	X	49958235	49958235	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	X	49958235	49958235	C	T	SNP	AKAP4	ENST00000358526	human	ensembl	74_37	-1	known	missense	c.1129	p.E377K	0.986	pfam_AKAP_110_C,smart_AKAP_110	pfam_AKAP_110_C,pfam_RII_binding_1,smart_AKAP_110	-	no_errors	AKAP4	HGNC	ENSG00000147081				57	0	0	40	10	20
TRO	0	genome.wustl.edu	37	X	54956240	54956240	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	X	54956240	54956240	G	T	SNP	TRO	ENST00000173898	human	ensembl	74_37	+1	known	missense	c.3083	p.G1028V	0.002	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	TRO	HGNC	ENSG00000067445				69	0	0	41	6	12.766
XIST	0	genome.wustl.edu	37	X	73064258	73064258	+	RNA	SNP	G	G	A			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	X	73064258	73064258	G	A	SNP	XIST	ENST00000429829	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.011	-	-	-	no_errors	XIST	HGNC	ENSG00000229807				77	0	0	38	5	11.6279
ARID1A	0	genome.wustl.edu	37	1	27106497	27106498	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	1	27106497	27106498	-	C	INS	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	frame_shift_ins	c.6108_6109	p.Q2036fs	1.000:1.000	pfam_DUF3518	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713				123	0	0	62	15	19.4805
PPM1D	0	genome.wustl.edu	37	17	58740623	58740624	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4188-01A-01D-1126-08	TCGA-BR-4188-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b1006a43-c576-49f4-aa45-1ab5dfc3b0e4	5719f03a-27b7-4219-b949-38b4d2a86977	17	58740623	58740624	-	A	INS	PPM1D	ENST00000305921	human	ensembl	74_37	+1	known	frame_shift_ins	c.1528_1529	p.N512fs	1.000:0.997	NULL	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	-	no_errors	PPM1D	HGNC	ENSG00000170836				132	0	0	92	11	10.6796
