Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ENSG00000234978	0	genome.wustl.edu	37	1	142804335	142804335	+	RNA	SNP	T	T	G			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	1	142804335	142804335	T	G	SNP	ENSG00000234978	ENST00000423385	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.117	-	-	-	no_errors	RP11-423O2.5	Clone_based_vega_gene	ENSG00000234978				10	0	0	9	5	35.7143
PPIAL4G	0	genome.wustl.edu	37	1	143767465	143767465	+	Silent	SNP	G	G	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	1	143767465	143767465	G	A	SNP	PPIAL4G	ENST00000419275	human	ensembl	74_37	-1	known	silent	c.384	p.A128	0.999	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPIAL4G	HGNC	ENSG00000236334				352	0	0	227	14	5.80913
POLR3C	0	genome.wustl.edu	37	1	145606349	145606349	+	Silent	SNP	T	T	G			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	1	145606349	145606349	T	G	SNP	POLR3C	ENST00000334163	human	ensembl	74_37	-1	known	silent	c.604	p.R202	0.999	pfam_RNA_pol_III_Rpc82_C	pfam_RNA_pol_III_Rpc82_C,pfam_RNA_pol_III_RPC82-rel_HTH	-	no_errors	POLR3C	HGNC	ENSG00000186141				73	0	0	42	15	26.3158
BCL9	0	genome.wustl.edu	37	1	147095649	147095649	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	1	147095649	147095649	G	A	SNP	BCL9	ENST00000234739	human	ensembl	74_37	+1	known	missense	c.3170	p.G1057D	1.000	NULL	pfam_BCL9_beta-catenin-bd_dom	-	no_errors	BCL9	HGNC	ENSG00000116128				188	1	0.529101	102	24	19.0476
SNX27	0	genome.wustl.edu	37	1	151641106	151641106	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	1	151641106	151641106	C	T	SNP	SNX27	ENST00000368843	human	ensembl	74_37	+1	known	missense	c.1144	p.H382Y	1.000	NULL	pfam_Phox,pfam_PDZ,pfam_Ras-assoc,superfamily_Phox,superfamily_PDZ,smart_PDZ,smart_Phox,pfscan_PDZ,pfscan_Phox,pfscan_Ras-assoc	-	no_errors	SNX27	HGNC	ENSG00000143376				74	0	0	32	9	21.9512
TCHH	0	genome.wustl.edu	37	1	152081195	152081195	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	1	152081195	152081195	C	T	SNP	TCHH	ENST00000368804	human	ensembl	74_37	-1	known	missense	c.4498	p.D1500N	0.034	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	TCHH	HGNC	ENSG00000159450				135	0	0	78	27	25.7143
FLG	0	genome.wustl.edu	37	1	152280083	152280083	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	1	152280083	152280083	C	T	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.7279	p.A2427T	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				363	1	0.274725	195	73	27.2388
IVNS1ABP	0	genome.wustl.edu	37	1	185277943	185277943	+	Silent	SNP	G	G	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	1	185277943	185277943	G	T	SNP	IVNS1ABP	ENST00000367498	human	ensembl	74_37	-1	known	silent	c.346	p.R116	0.999	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_Kelch_2,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	IVNS1ABP	HGNC	ENSG00000116679				120	0	0	63	26	29.2135
IGFN1	0	genome.wustl.edu	37	1	201195075	201195075	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	1	201195075	201195075	G	A	SNP	IGFN1	ENST00000335211	human	ensembl	74_37	+1	known	missense	c.10610	p.R3537H	0.961	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	IGFN1	HGNC	ENSG00000163395				23	0	0	10	3	23.0769
FMOD	0	genome.wustl.edu	37	1	203317347	203317347	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	1	203317347	203317347	C	T	SNP	FMOD	ENST00000354955	human	ensembl	74_37	-1	known	missense	c.52	p.A18T	1.000	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	FMOD	HGNC	ENSG00000122176				81	0	0	31	10	24.3902
CNR2	0	genome.wustl.edu	37	1	24201571	24201571	+	Silent	SNP	G	G	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	1	24201571	24201571	G	A	SNP	CNR2	ENST00000374472	human	ensembl	74_37	-1	known	silent	c.537	p.C179	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Cnbnoid_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Canbinoid_rcpt_2,prints_Cnbnoid_rcpt,prints_GPCR_Rhodpsn	-	no_errors	CNR2	HGNC	ENSG00000188822				55	0	0	22	6	21.4286
SNIP1	0	genome.wustl.edu	37	1	38003393	38003393	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	1	38003393	38003393	C	G	SNP	SNIP1	ENST00000296215	human	ensembl	74_37	-1	known	missense	c.1147	p.D383H	0.998	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	SNIP1	HGNC	ENSG00000163877				136	0	0	82	20	19.6078
MYSM1	0	genome.wustl.edu	37	1	59125655	59125655	+	RNA	SNP	T	T	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	1	59125655	59125655	T	A	SNP	MYSM1	ENST00000401044	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	MYSM1	HGNC	ENSG00000162601				45	0	0	20	2	9.09091
SH3GLB1	0	genome.wustl.edu	37	1	87190089	87190089	+	Splice_Site	SNP	G	G	C			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	1	87190089	87190089	G	C	SNP	SH3GLB1	ENST00000482504	human	ensembl	74_37	+1	known	splice_site	c.570+1	e5+1	1.000	-	-	-	no_errors	SH3GLB1	HGNC	ENSG00000097033				19	0	0	13	5	27.7778
PLEKHS1	0	genome.wustl.edu	37	10	115534093	115534093	+	Splice_Site	SNP	G	G	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	10	115534093	115534093	G	A	SNP	PLEKHS1	ENST00000369310	human	ensembl	74_37	+1	known	splice_site	c.761+1	e8+1	1.000	-	-	-	no_errors	PLEKHS1	HGNC	ENSG00000148735				70	0	0	37	8	17.7778
WDR11	0	genome.wustl.edu	37	10	122668308	122668308	+	RNA	SNP	G	G	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	10	122668308	122668308	G	A	SNP	WDR11	ENST00000604509	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	WDR11	HGNC	ENSG00000120008				21	0	0	11	6	35.2941
BMI1	0	genome.wustl.edu	37	10	22617625	22617625	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	10	22617625	22617625	C	G	SNP	BMI1	ENST00000376663	human	ensembl	74_37	+1	known	missense	c.568	p.Q190E	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	BMI1	HGNC	ENSG00000168283				80	0	0	48	16	25
STOX1	0	genome.wustl.edu	37	10	70645583	70645583	+	Silent	SNP	C	C	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	10	70645583	70645583	C	A	SNP	STOX1	ENST00000298596	human	ensembl	74_37	+1	known	silent	c.2031	p.G677	0.000	NULL	pfam_Storkhead-box_winged-helix	-	no_errors	STOX1	HGNC	ENSG00000165730				154	1	0.645161	119	29	19.5946
AIFM2	0	genome.wustl.edu	37	10	71876517	71876517	+	Silent	SNP	G	G	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	10	71876517	71876517	G	A	SNP	AIFM2	ENST00000307864	human	ensembl	74_37	-1	known	silent	c.630	p.S210	1.000	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_OxRdtase_NAD-bd_dom	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_OxRdtase_NAD-bd_dom,prints_FAD_pyr_nucl-diS_OxRdtase,prints_Pyridine_nuc-diS_OxRdtase_2,prints_Rng_hydrolase-like	-	no_errors	AIFM2	HGNC	ENSG00000042286				96	0	0	60	12	16.6667
ZSWIM8	0	genome.wustl.edu	37	10	75549954	75549954	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	10	75549954	75549954	C	T	SNP	ZSWIM8	ENST00000398706	human	ensembl	74_37	+1	known	missense	c.845	p.S282L	0.995	NULL	pfscan_Znf_SWIM	-	no_errors	ZSWIM8	HGNC	ENSG00000214655				65	0	0	43	12	21.8182
ITIH5	0	genome.wustl.edu	37	10	7608346	7608346	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	10	7608346	7608346	A	G	SNP	ITIH5	ENST00000256861	human	ensembl	74_37	-1	known	missense	c.2174	p.I725T	0.974	pfam_ITI_HC_C	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH5	HGNC	ENSG00000123243				51	0	0	11	6	35.2941
GRID1	0	genome.wustl.edu	37	10	87484277	87484277	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	10	87484277	87484277	C	A	SNP	GRID1	ENST00000327946	human	ensembl	74_37	-1	known	missense	c.1690	p.A564S	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRID1	HGNC	ENSG00000182771				70	0	0	28	11	28.2051
IFIT3	0	genome.wustl.edu	37	10	91099742	91099742	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	10	91099742	91099742	C	T	SNP	IFIT3	ENST00000371811	human	ensembl	74_37	+1	known	missense	c.1330	p.R444C	0.004	smart_TPR_repeat	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	IFIT3	HGNC	ENSG00000119917				94	0	0	30	18	37.5
C10orf12	0	genome.wustl.edu	37	10	98741419	98741419	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	10	98741419	98741419	G	T	SNP	C10orf12	ENST00000286067	human	ensembl	74_37	+1	known	missense	c.272	p.R91I	1.000	NULL	NULL	-	no_errors	C10orf12	HGNC	ENSG00000155640				101	0	0	23	16	41.0256
RRP12	0	genome.wustl.edu	37	10	99140565	99140565	+	Silent	SNP	C	C	G			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	10	99140565	99140565	C	G	SNP	RRP12	ENST00000370992	human	ensembl	74_37	-1	known	silent	c.1524	p.V508	1.000	pfam_Uncharacterised_NUC173,superfamily_ARM-type_fold	pfam_Uncharacterised_NUC173,superfamily_ARM-type_fold	-	no_errors	RRP12	HGNC	ENSG00000052749				54	0	0	6	13	68.4211
CDON	0	genome.wustl.edu	37	11	125891253	125891253	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	11	125891253	125891253	C	T	SNP	CDON	ENST00000392693	human	ensembl	74_37	-1	known	missense	c.239	p.G80E	0.998	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CDON	HGNC	ENSG00000064309				72	0	0	33	3	8.33333
KCNJ1	0	genome.wustl.edu	37	11	128709348	128709348	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	11	128709348	128709348	G	A	SNP	KCNJ1	ENST00000392664	human	ensembl	74_37	-1	known	missense	c.848	p.A283V	1.000	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir1.1	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir1.1,prints_K_chnl_inward-rec_Kir	-	no_errors	KCNJ1	HGNC	ENSG00000151704				92	0	0	24	14	36.8421
SOX6	0	genome.wustl.edu	37	11	16007941	16007941	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	11	16007941	16007941	G	C	SNP	SOX6	ENST00000352083	human	ensembl	74_37	-1	known	missense	c.1992	p.N664K	1.000	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX6	HGNC	ENSG00000110693				96	0	0	49	17	25.7576
MUC15	0	genome.wustl.edu	37	11	26587411	26587411	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	11	26587411	26587411	G	T	SNP	MUC15	ENST00000436318	human	ensembl	74_37	-1	known	missense	c.76	p.P26T	0.058	NULL	NULL	-	no_errors	MUC15	HGNC	ENSG00000169550				71	0	0	28	13	31.7073
ELP4	0	genome.wustl.edu	37	11	31784988	31784988	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	11	31784988	31784988	G	C	SNP	ELP4	ENST00000395934	human	ensembl	74_37	+1	known	missense	c.1462	p.E488Q	1.000	NULL	pfam_Elongator_complex_protein_4,superfamily_P-loop_NTPase	-	no_errors	ELP4	HGNC	ENSG00000109911				101	0	0	55	7	11.2903
DEPDC7	0	genome.wustl.edu	37	11	33053076	33053076	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	11	33053076	33053076	G	C	SNP	DEPDC7	ENST00000241051	human	ensembl	74_37	+1	known	missense	c.935	p.S312T	0.000	NULL	pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	DEPDC7	HGNC	ENSG00000121690				71	0	0	47	9	16.0714
OR51B4	0	genome.wustl.edu	37	11	5323107	5323107	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	11	5323107	5323107	G	A	SNP	OR51B4	ENST00000380224	human	ensembl	74_37	-1	known	missense	c.70	p.R24W	0.998	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51B4	HGNC	ENSG00000183251				86	0	0	24	11	31.4286
SPTBN2	0	genome.wustl.edu	37	11	66460149	66460149	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	11	66460149	66460149	G	A	SNP	SPTBN2	ENST00000309996	human	ensembl	74_37	-1	known	missense	c.5048	p.A1683V	1.000	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN2	HGNC	ENSG00000173898				29	0	0	14	6	30
OR6A2	0	genome.wustl.edu	37	11	6816879	6816879	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	11	6816879	6816879	G	C	SNP	OR6A2	ENST00000332601	human	ensembl	74_37	-1	known	missense	c.61	p.P21A	0.992	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6A2	HGNC	ENSG00000184933				89	0	0	27	10	27.027
BTBD11	0	genome.wustl.edu	37	12	108004005	108004005	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	12	108004005	108004005	C	T	SNP	BTBD11	ENST00000280758	human	ensembl	74_37	+1	known	missense	c.1682	p.A561V	1.000	NULL	pfam_Ankyrin_rpt,pfam_BTB_POZ,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,superfamily_Histone-fold,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like	-	no_errors	BTBD11	HGNC	ENSG00000151136				109	0	0	60	10	14.2857
TAS2R7	0	genome.wustl.edu	37	12	10954694	10954694	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	12	10954694	10954694	C	A	SNP	TAS2R7	ENST00000240687	human	ensembl	74_37	-1	known	missense	c.476	p.C159F	0.000	pfam_TAS2_rcpt,pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_TAS2_rcpt,pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	TAS2R7	HGNC	ENSG00000121377				57	0	0	19	9	32.1429
KNTC1	0	genome.wustl.edu	37	12	123060182	123060182	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	12	123060182	123060182	G	T	SNP	KNTC1	ENST00000333479	human	ensembl	74_37	+1	known	missense	c.2475	p.M825I	1.000	NULL	pfam_RZZ-complex_KNTC1/ROD_C,superfamily_Quino_amine_DH_bsu,superfamily_WD40_repeat_dom,superfamily_PAH	-	no_errors	KNTC1	HGNC	ENSG00000184445				17	0	0	6	7	53.8462
NCOR2	0	genome.wustl.edu	37	12	124862804	124862804	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	12	124862804	124862804	C	G	SNP	NCOR2	ENST00000356219	human	ensembl	74_37	-1	known	missense	c.2146	p.E716Q	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR2	HGNC	ENSG00000196498				76	0	0	40	9	18.3673
GUCY2C	0	genome.wustl.edu	37	12	14804400	14804400	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	12	14804400	14804400	C	A	SNP	GUCY2C	ENST00000261170	human	ensembl	74_37	-1	known	missense	c.1651	p.V551L	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_A/G_cyclase,superfamily_Peripla_BP_I,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_A/G_cyclase	-	no_errors	GUCY2C	HGNC	ENSG00000070019				75	0	0	33	8	19.5122
PLEKHA8P1	0	genome.wustl.edu	37	12	45567963	45567963	+	RNA	SNP	G	G	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	12	45567963	45567963	G	A	SNP	PLEKHA8P1	ENST00000256692	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.344	-	-	-	no_errors	PLEKHA8P1	HGNC	ENSG00000134297				156	0	0	73	29	28.4314
KRT2	0	genome.wustl.edu	37	12	53040566	53040566	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	12	53040566	53040566	T	A	SNP	KRT2	ENST00000309680	human	ensembl	74_37	-1	known	missense	c.1427	p.E476V	1.000	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT2	HGNC	ENSG00000172867				137	0	0	97	23	19.1667
KRT79	0	genome.wustl.edu	37	12	53225213	53225213	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	12	53225213	53225213	G	T	SNP	KRT79	ENST00000330553	human	ensembl	74_37	-1	known	missense	c.675	p.D225E	0.006	pfam_IF,prints_Keratin_II	pfam_IF,superfamily_STAT_TF_coiled-coil,prints_Keratin_II	-	no_errors	KRT79	HGNC	ENSG00000185640				113	0	0	54	17	23.9437
LRIG3	0	genome.wustl.edu	37	12	59279648	59279648	+	Silent	SNP	T	T	C			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	12	59279648	59279648	T	C	SNP	LRIG3	ENST00000320743	human	ensembl	74_37	-1	known	silent	c.1209	p.K403	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRIG3	HGNC	ENSG00000139263				263	0	0	157	46	22.6601
BEST3	0	genome.wustl.edu	37	12	70091576	70091576	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	12	70091576	70091576	C	T	SNP	BEST3	ENST00000330891	human	ensembl	74_37	-1	known	missense	c.3	p.M1I	1.000	NULL	pfam_Bestrophin/UPF0187	-	no_errors	BEST3	HGNC	ENSG00000127325				105	0	0	63	23	26.7442
NAV3	0	genome.wustl.edu	37	12	78582112	78582112	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	12	78582112	78582112	C	T	SNP	NAV3	ENST00000397909	human	ensembl	74_37	+1	known	missense	c.5875	p.R1959C	1.000	NULL	pfam_CH-domain,pfam_ATPase_AAA_core,superfamily_CH-domain,superfamily_P-loop_NTPase,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV3	HGNC	ENSG00000067798				51	0	0	46	7	13.2075
DCN	0	genome.wustl.edu	37	12	91545450	91545450	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	12	91545450	91545450	G	A	SNP	DCN	ENST00000052754	human	ensembl	74_37	-1	known	missense	c.866	p.A289V	0.980	smart_Leu-rich_rpt_typical-subtyp,pirsf_SLRP_I_decor/aspor/byglycan	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,pirsf_SLRP_I_decor/aspor/byglycan	-	no_errors	DCN	HGNC	ENSG00000011465				46	0	0	33	2	5.71429
A2M	0	genome.wustl.edu	37	12	9227252	9227252	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	12	9227252	9227252	C	A	SNP	A2M	ENST00000318602	human	ensembl	74_37	-1	known	missense	c.3660	p.Q1220H	0.000	pfam_A2M_comp,superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,superfamily_Beta-lactam/transpept-like,superfamily_Cupredoxin	-	no_errors	A2M	HGNC	ENSG00000175899				34	0	0	19	7	26.9231
WNK1	0	genome.wustl.edu	37	12	922912	922912	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	12	922912	922912	A	T	SNP	WNK1	ENST00000530271	human	ensembl	74_37	+1	known	missense	c.864	p.E288D	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK1	HGNC	ENSG00000060237				44	0	0	24	5	17.2414
WNK1	0	genome.wustl.edu	37	12	989017	989017	+	Silent	SNP	G	G	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	12	989017	989017	G	T	SNP	WNK1	ENST00000530271	human	ensembl	74_37	+1	known	silent	c.4146	p.A1382	0.220	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK1	HGNC	ENSG00000060237				97	0	0	54	22	28.9474
EFNB2	0	genome.wustl.edu	37	13	107147295	107147295	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	13	107147295	107147295	G	A	SNP	EFNB2	ENST00000245323	human	ensembl	74_37	-1	known	missense	c.547	p.P183S	1.000	NULL	pfam_Ephrin,superfamily_Cupredoxin,prints_Ephrin	-	no_errors	EFNB2	HGNC	ENSG00000125266				153	0	0	95	23	19.4915
ADPRHL1	0	genome.wustl.edu	37	13	114077206	114077206	+	Silent	SNP	G	G	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	13	114077206	114077206	G	A	SNP	ADPRHL1	ENST00000375418	human	ensembl	74_37	-1	known	silent	c.996	p.D332	0.934	superfamily_Ribosyl_crysJ1,pirsf_ADP-ribosylarg_hydro	pfam_Ribosyl_crysJ1,superfamily_Ribosyl_crysJ1,pirsf_ADP-ribosylarg_hydro	-	no_errors	ADPRHL1	HGNC	ENSG00000153531				60	0	0	29	7	19.4444
TPTE2P6	0	genome.wustl.edu	37	13	25168489	25168489	+	RNA	SNP	G	G	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	13	25168489	25168489	G	A	SNP	TPTE2P6	ENST00000440905	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.082	-	-	-	no_errors	TPTE2P6	HGNC	ENSG00000205822				31	0	0	26	3	10.3448
RASL11A	0	genome.wustl.edu	37	13	27847365	27847365	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	13	27847365	27847365	C	T	SNP	RASL11A	ENST00000241463	human	ensembl	74_37	+1	known	missense	c.463	p.R155W	1.000	pfam_Small_GTPase,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RASL11A	HGNC	ENSG00000122035				41	0	0	17	7	29.1667
B3GALTL	0	genome.wustl.edu	37	13	31898019	31898019	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	13	31898019	31898019	C	G	SNP	B3GALTL	ENST00000343307	human	ensembl	74_37	+1	known	missense	c.1316	p.P439R	1.000	pfam_Fringe-like	pfam_Fringe-like	-	no_errors	B3GALTL	HGNC	ENSG00000187676				322	0	0	86	82	48.8095
ENOX1	0	genome.wustl.edu	37	13	43986166	43986166	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	13	43986166	43986166	C	G	SNP	ENOX1	ENST00000261488	human	ensembl	74_37	-1	known	missense	c.94	p.A32P	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	ENOX1	HGNC	ENSG00000120658				42	0	0	20	10	33.3333
CCDC122	0	genome.wustl.edu	37	13	44443470	44443470	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	13	44443470	44443470	C	T	SNP	CCDC122	ENST00000281508	human	ensembl	74_37	-1	known	missense	c.43	p.E15K	0.310	NULL	NULL	-	no_errors	CCDC122	HGNC	ENSG00000151773				61	0	0	35	7	16.6667
PIBF1	0	genome.wustl.edu	37	13	73547774	73547774	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	13	73547774	73547774	A	C	SNP	PIBF1	ENST00000326291	human	ensembl	74_37	+1	known	missense	c.2010	p.Q670H	1.000	superfamily_t-SNARE	superfamily_t-SNARE	-	no_errors	PIBF1	HGNC	ENSG00000083535				66	0	0	46	11	19.2982
EDNRB	0	genome.wustl.edu	37	13	78492668	78492668	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	13	78492668	78492668	G	A	SNP	EDNRB	ENST00000334286	human	ensembl	74_37	-1	known	missense	c.41	p.A14V	0.993	prints_ETB_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_ETB_rcpt,prints_Endthln_rcpt,prints_GPCR_Rhodpsn,prints_Bombsn_rcpt	-	no_errors	EDNRB	HGNC	ENSG00000136160				32	0	0	14	8	36.3636
PACS2	0	genome.wustl.edu	37	14	105859631	105859631	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	14	105859631	105859631	G	C	SNP	PACS2	ENST00000458164	human	ensembl	74_37	+1	known	missense	c.2555	p.R852P	0.999	pfam_Phosphofurin_acidic_CS-1	pfam_Phosphofurin_acidic_CS-1	-	no_errors	PACS2	HGNC	ENSG00000179364				40	0	0	12	12	50
OR4N2	0	genome.wustl.edu	37	14	20295867	20295867	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	14	20295867	20295867	C	A	SNP	OR4N2	ENST00000315947	human	ensembl	74_37	+1	known	missense	c.260	p.S87Y	0.906	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4N2	HGNC	ENSG00000176294				141	0	0	66	25	27.4725
SDR39U1	0	genome.wustl.edu	37	14	24911974	24911974	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	14	24911974	24911974	A	T	SNP	SDR39U1	ENST00000399395	human	ensembl	74_37	-1	known	missense	c.2	p.M1K	1.000	NULL	pfam_DUF1731_C,pfam_Epimerase_deHydtase,tigrfam_Sugar_nucleotide_Epase_put	-	no_errors	SDR39U1	HGNC	ENSG00000100445				189	0	0	102	41	28.6713
GZMH	0	genome.wustl.edu	37	14	25078787	25078787	+	Silent	SNP	A	A	C			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	14	25078787	25078787	A	C	SNP	GZMH	ENST00000216338	human	ensembl	74_37	-1	known	silent	c.33	p.L11	0.926	superfamily_Trypsin-like_Pept_dom	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	GZMH	HGNC	ENSG00000100450				118	0	0	56	22	28.2051
RTN1	0	genome.wustl.edu	37	14	60069806	60069806	+	Silent	SNP	A	A	C			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	14	60069806	60069806	A	C	SNP	RTN1	ENST00000267484	human	ensembl	74_37	-1	known	silent	c.2265	p.T755	1.000	pfam_Reticulon,pfscan_Reticulon	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN1	HGNC	ENSG00000139970				59	0	0	29	12	29.2683
C14orf169	0	genome.wustl.edu	37	14	73959764	73959764	+	RNA	SNP	A	A	G			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	14	73959764	73959764	A	G	SNP	C14orf169	ENST00000531973	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.799	-	-	-	no_errors	C14orf169	HGNC	ENSG00000255242				129	0	0	50	23	31.5068
SMEK1	0	genome.wustl.edu	37	14	91927850	91927850	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	14	91927850	91927850	G	C	SNP	SMEK1	ENST00000554943	human	ensembl	74_37	-1	known	missense	c.2266	p.L756V	1.000	NULL	pfam_DUF625,superfamily_ARM-type_fold	-	no_errors	SMEK1	HGNC	ENSG00000100796				183	0	0	88	26	22.807
SERPINA10	0	genome.wustl.edu	37	14	94756557	94756557	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	14	94756557	94756557	T	A	SNP	SERPINA10	ENST00000261994	human	ensembl	74_37	-1	known	missense	c.374	p.K125M	0.006	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINA10	HGNC	ENSG00000140093				44	0	0	26	6	18.75
OR4F15	0	genome.wustl.edu	37	15	102359303	102359303	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	15	102359303	102359303	T	C	SNP	OR4F15	ENST00000332238	human	ensembl	74_37	+1	known	missense	c.914	p.L305P	0.165	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4F15	HGNC	ENSG00000182854				36	0	0	13	9	40.9091
ATP10A	0	genome.wustl.edu	37	15	25924998	25924998	+	Silent	SNP	G	G	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	15	25924998	25924998	G	A	SNP	ATP10A	ENST00000356865	human	ensembl	74_37	-1	known	silent	c.3990	p.L1330	0.000	NULL	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP10A	HGNC	ENSG00000206190				76	0	0	40	12	23.0769
FBN1	0	genome.wustl.edu	37	15	48808532	48808532	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	15	48808532	48808532	G	A	SNP	FBN1	ENST00000316623	human	ensembl	74_37	-1	known	missense	c.1175	p.P392L	0.689	superfamily_TB_dom,pirsf_FBN	pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147				85	0	0	37	17	31.4815
DMXL2	0	genome.wustl.edu	37	15	51790812	51790812	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	15	51790812	51790812	A	T	SNP	DMXL2	ENST00000543779	human	ensembl	74_37	-1	known	missense	c.4609	p.L1537M	0.989	pfam_Rav1p_C	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL2	HGNC	ENSG00000104093				59	0	0	34	8	19.0476
RFX7	0	genome.wustl.edu	37	15	56388648	56388648	+	Silent	SNP	C	C	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	15	56388648	56388648	C	T	SNP	RFX7	ENST00000423270	human	ensembl	74_37	-1	known	silent	c.1278	p.R426	0.993	NULL	pfam_DNA-bd_RFX	-	no_errors	RFX7	HGNC	ENSG00000181827				32	0	0	16	7	30.4348
ANP32A	0	genome.wustl.edu	37	15	69080154	69080154	+	Silent	SNP	G	G	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	15	69080154	69080154	G	A	SNP	ANP32A	ENST00000465139	human	ensembl	74_37	-1	known	silent	c.159	p.G53	1.000	NULL	pfam_Leu-rich_rpt,smart_U2A'_phosphoprotein32A_C	-	no_errors	ANP32A	HGNC	ENSG00000140350				130	1	0.763359	90	23	20.354
CSK	0	genome.wustl.edu	37	15	75091016	75091016	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	15	75091016	75091016	C	T	SNP	CSK	ENST00000220003	human	ensembl	74_37	+1	known	nonsense	c.76	p.Q26*	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	CSK	HGNC	ENSG00000103653				36	0	0	17	10	37.037
FURIN	0	genome.wustl.edu	37	15	91423404	91423404	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	15	91423404	91423404	A	T	SNP	FURIN	ENST00000268171	human	ensembl	74_37	+1	known	missense	c.1457	p.H486L	1.000	pfam_PrprotnconvertsP,superfamily_Galactose-bd-like	pfam_Peptidase_S8/S53_dom,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53_dom,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,prints_Peptidase_S8_subtilisin-rel	-	no_errors	FURIN	HGNC	ENSG00000140564				15	0	0	10	3	23.0769
SYNM	0	genome.wustl.edu	37	15	99670184	99670184	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	15	99670184	99670184	A	G	SNP	SYNM	ENST00000336292	human	ensembl	74_37	+1	known	missense	c.1616	p.E539G	0.997	NULL	pfam_IF	-	no_errors	SYNM	HGNC	ENSG00000182253				46	0	0	35	26	42.623
SRCAP	0	genome.wustl.edu	37	16	30747914	30747914	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	16	30747914	30747914	A	G	SNP	SRCAP	ENST00000262518	human	ensembl	74_37	+1	known	missense	c.6977	p.E2326G	1.000	NULL	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603				37	0	0	19	4	17.3913
CHD9	0	genome.wustl.edu	37	16	53272298	53272298	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	16	53272298	53272298	A	G	SNP	CHD9	ENST00000398510	human	ensembl	74_37	+1	known	missense	c.2677	p.I893V	1.000	pfam_SNF2_N,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD9	HGNC	ENSG00000177200				67	0	0	44	16	26.6667
ACSF3	0	genome.wustl.edu	37	16	89187233	89187233	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	16	89187233	89187233	G	A	SNP	ACSF3	ENST00000542688	human	ensembl	74_37	+1	known	nonsense	c.1002	p.W334*	0.786	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSF3	HGNC	ENSG00000176715				158	0	0	93	39	29.5455
GAS8	0	genome.wustl.edu	37	16	90103775	90103775	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	16	90103775	90103775	G	A	SNP	GAS8	ENST00000268699	human	ensembl	74_37	+1	known	missense	c.892	p.A298T	0.000	NULL	NULL	-	no_errors	GAS8	HGNC	ENSG00000141013				44	0	0	17	11	39.2857
ELAC2	0	genome.wustl.edu	37	17	12905646	12905646	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	17	12905646	12905646	C	G	SNP	ELAC2	ENST00000338034	human	ensembl	74_37	-1	known	missense	c.1249	p.V417L	0.078	NULL	pfam_Beta-lactamas-like	-	no_errors	ELAC2	HGNC	ENSG00000006744				45	0	0	16	3	15.7895
ZNF287	0	genome.wustl.edu	37	17	16466545	16466545	+	Silent	SNP	T	T	C			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	17	16466545	16466545	T	C	SNP	ZNF287	ENST00000395824	human	ensembl	74_37	-1	known	silent	c.630	p.G210	1.000	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF287	HGNC	ENSG00000141040				47	0	0	19	7	26.9231
TADA2A	0	genome.wustl.edu	37	17	35830563	35830563	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	17	35830563	35830563	A	G	SNP	TADA2A	ENST00000225396	human	ensembl	74_37	+1	known	missense	c.955	p.M319V	1.000	pirsf_Transcriptional_adaptor_2	pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pirsf_Transcriptional_adaptor_2,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	TADA2A	HGNC	ENSG00000108264				130	0	0	65	17	20.7317
KRT33A	0	genome.wustl.edu	37	17	39505636	39505636	+	Silent	SNP	G	G	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	17	39505636	39505636	G	A	SNP	KRT33A	ENST00000007735	human	ensembl	74_37	-1	known	silent	c.393	p.I131	0.768	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT33A	HGNC	ENSG00000006059				78	0	0	34	12	26.087
KRT37	0	genome.wustl.edu	37	17	39579089	39579089	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	17	39579089	39579089	C	T	SNP	KRT37	ENST00000225550	human	ensembl	74_37	-1	known	missense	c.673	p.E225K	1.000	pfam_IF,prints_Keratin_I	pfam_IF,prints_Keratin_I	-	no_errors	KRT37	HGNC	ENSG00000108417				50	0	0	19	7	26.9231
FMNL1	0	genome.wustl.edu	37	17	43314722	43314722	+	Silent	SNP	C	C	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	17	43314722	43314722	C	A	SNP	FMNL1	ENST00000328118	human	ensembl	74_37	+1	known	silent	c.798	p.P266	0.965	pfam_GTPase-bd,superfamily_ARM-type_fold	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FMNL1	HGNC	ENSG00000184922				61	0	0	26	9	25.7143
NFE2L1	0	genome.wustl.edu	37	17	46128617	46128617	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	17	46128617	46128617	C	G	SNP	NFE2L1	ENST00000362042	human	ensembl	74_37	+1	known	missense	c.137	p.P46R	1.000	NULL	pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L1	HGNC	ENSG00000082641				114	0	0	56	19	25.3333
HOXB3	0	genome.wustl.edu	37	17	46629484	46629484	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	17	46629484	46629484	C	A	SNP	HOXB3	ENST00000311626	human	ensembl	74_37	-1	known	missense	c.353	p.G118V	0.422	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXB3	HGNC	ENSG00000120093				198	0	0	84	25	22.9358
B4GALNT2	0	genome.wustl.edu	37	17	47219490	47219490	+	Silent	SNP	G	G	C			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	17	47219490	47219490	G	C	SNP	B4GALNT2	ENST00000300404	human	ensembl	74_37	+1	known	silent	c.489	p.A163	0.000	pirsf_GM2_synthase	pfam_Glyco_trans_2,pirsf_GM2_synthase	-	no_errors	B4GALNT2	HGNC	ENSG00000167080				133	0	0	46	13	22.0339
ABI3	0	genome.wustl.edu	37	17	47295217	47295217	+	Silent	SNP	G	G	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	17	47295217	47295217	G	A	SNP	ABI3	ENST00000225941	human	ensembl	74_37	+1	known	silent	c.402	p.T134	0.950	pfam_Abl-interactor_HHR_dom	pfam_Abl-interactor_HHR_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	ABI3	HGNC	ENSG00000108798				72	0	0	42	11	20.7547
DNAH17	0	genome.wustl.edu	37	17	76501424	76501424	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	17	76501424	76501424	T	C	SNP	DNAH17	ENST00000389840	human	ensembl	74_37	-1	known	missense	c.4895	p.K1632R	1.000	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_HR1_rho-bd	-	no_errors	DNAH17	HGNC	ENSG00000187775				77	0	0	34	6	15
DNAH2	0	genome.wustl.edu	37	17	7674725	7674725	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	17	7674725	7674725	G	A	SNP	DNAH2	ENST00000389173	human	ensembl	74_37	+1	known	nonsense	c.4440	p.W1480*	1.000	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914				116	0	0	51	21	29.1667
RCVRN	0	genome.wustl.edu	37	17	9801319	9801319	+	RNA	SNP	G	G	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	17	9801319	9801319	G	A	SNP	RCVRN	ENST00000570909	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	RCVRN	HGNC	ENSG00000109047				25	0	0	18	8	30.7692
PIEZO2	0	genome.wustl.edu	37	18	10696150	10696150	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	18	10696150	10696150	C	T	SNP	PIEZO2	ENST00000538948	human	ensembl	74_37	-1	known	missense	c.644	p.G215E	1.000	NULL	pfam_Piezo	-	no_errors	PIEZO2	HGNC	ENSG00000154864				127	1	0.78125	79	17	17.7083
CEP192	0	genome.wustl.edu	37	18	13040842	13040842	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	18	13040842	13040842	A	G	SNP	CEP192	ENST00000506447	human	ensembl	74_37	+1	known	missense	c.1823	p.Y608C	1.000	NULL	NULL	-	no_errors	CEP192	HGNC	ENSG00000101639				77	0	0	32	11	25.5814
DSG1	0	genome.wustl.edu	37	18	28934840	28934840	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	18	28934840	28934840	T	G	SNP	DSG1	ENST00000257192	human	ensembl	74_37	+1	known	missense	c.2681	p.V894G	1.000	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Desmoglein,prints_Cadherin,prints_Desmosomal_cadherin	-	no_errors	DSG1	HGNC	ENSG00000134760				170	1	0.584795	125	33	20.8861
DSG4	0	genome.wustl.edu	37	18	28989416	28989416	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	18	28989416	28989416	G	T	SNP	DSG4	ENST00000359747	human	ensembl	74_37	+1	known	missense	c.1935	p.L645F	0.597	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmoglein,prints_Desmosomal_cadherin	-	no_errors	DSG4	HGNC	ENSG00000175065				139	0	0	95	27	22.1311
SLC25A52	0	genome.wustl.edu	37	18	29340618	29340618	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	18	29340618	29340618	C	T	SNP	SLC25A52	ENST00000269205	human	ensembl	74_37	-1	known	missense	c.37	p.D13N	0.992	NULL	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A52	HGNC	ENSG00000141437				106	0	0	75	13	14.7727
MYOM1	0	genome.wustl.edu	37	18	3134758	3134758	+	Silent	SNP	C	C	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	18	3134758	3134758	C	T	SNP	MYOM1	ENST00000356443	human	ensembl	74_37	-1	known	silent	c.2274	p.S758	0.018	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYOM1	HGNC	ENSG00000101605				84	0	0	44	17	27.8689
COLEC12	0	genome.wustl.edu	37	18	346782	346782	+	Silent	SNP	G	G	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	18	346782	346782	G	A	SNP	COLEC12	ENST00000400256	human	ensembl	74_37	-1	known	silent	c.840	p.N280	0.075	NULL	pfam_C-type_lectin,pfam_Collagen,superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_AntifreezeII,pfscan_C-type_lectin	-	no_errors	COLEC12	HGNC	ENSG00000158270				50	0	0	52	10	16.129
KIAA1468	0	genome.wustl.edu	37	18	59928806	59928806	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	18	59928806	59928806	G	C	SNP	KIAA1468	ENST00000256858	human	ensembl	74_37	+1	known	missense	c.2265	p.L755F	1.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold,smart_LisH_dimerisation,pfscan_HEAT_type_2,pfscan_LisH_dimerisation	-	no_errors	KIAA1468	HGNC	ENSG00000134444				80	0	0	26	15	36.5854
ICAM3	0	genome.wustl.edu	37	19	10449619	10449619	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	19	10449619	10449619	G	A	SNP	ICAM3	ENST00000160262	human	ensembl	74_37	-1	known	nonsense	c.82	p.Q28*	0.010	pfam_ICAM_N	pfam_ICAM_N,smart_Ig_sub,pfscan_Ig-like_dom,prints_ICAM_VCAM_N,prints_ICAM	-	no_errors	ICAM3	HGNC	ENSG00000076662				61	0	0	31	11	26.1905
CACNA1A	0	genome.wustl.edu	37	19	13445285	13445285	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	19	13445285	13445285	G	A	SNP	CACNA1A	ENST00000360228	human	ensembl	74_37	-1	known	missense	c.1105	p.R369W	1.000	prints_VDCCAlpha1	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_P/Q_a1su	-	no_errors	CACNA1A	HGNC	ENSG00000141837				57	0	0	37	12	24.4898
ARRDC2	0	genome.wustl.edu	37	19	18119572	18119572	+	Silent	SNP	C	C	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	19	18119572	18119572	C	T	SNP	ARRDC2	ENST00000222250	human	ensembl	74_37	+1	known	silent	c.327	p.S109	1.000	pfam_Arrestin-like_N,superfamily_Ig_E-set	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set	-	no_errors	ARRDC2	HGNC	ENSG00000105643				42	0	0	16	12	42.8571
ARMC6	0	genome.wustl.edu	37	19	19162555	19162555	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	19	19162555	19162555	G	T	SNP	ARMC6	ENST00000392336	human	ensembl	74_37	+1	known	missense	c.404	p.G135V	0.996	superfamily_ARM-type_fold	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMC6	HGNC	ENSG00000105676				58	0	0	38	7	15.5556
ARMC6	0	genome.wustl.edu	37	19	19162556	19162556	+	Silent	SNP	G	G	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	19	19162556	19162556	G	T	SNP	ARMC6	ENST00000392336	human	ensembl	74_37	+1	known	silent	c.405	p.G135	0.891	superfamily_ARM-type_fold	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMC6	HGNC	ENSG00000105676				59	0	0	38	7	15.5556
SLC25A42	0	genome.wustl.edu	37	19	19217190	19217190	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	19	19217190	19217190	G	A	SNP	SLC25A42	ENST00000318596	human	ensembl	74_37	+1	known	missense	c.493	p.E165K	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier,prints_Graves_DC	-	no_errors	SLC25A42	HGNC	ENSG00000181035				32	0	0	20	8	28.5714
IRF2BP1	0	genome.wustl.edu	37	19	46387319	46387319	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	19	46387319	46387319	G	A	SNP	IRF2BP1	ENST00000302165	human	ensembl	74_37	-1	known	missense	c.1714	p.L572F	1.000	pfam_Interferon_reg_fac2-bd1_2_Znf	pfam_Interferon_reg_fac2-bd1_2_Znf	-	no_errors	IRF2BP1	HGNC	ENSG00000170604				26	0	0	7	2	22.2222
CCDC114	0	genome.wustl.edu	37	19	48807339	48807339	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	19	48807339	48807339	G	T	SNP	CCDC114	ENST00000315396	human	ensembl	74_37	-1	known	missense	c.613	p.Q205K	0.311	NULL	NULL	-	no_errors	CCDC114	HGNC	ENSG00000105479				65	0	0	38	9	19.1489
GP6	0	genome.wustl.edu	37	19	55543747	55543747	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	19	55543747	55543747	A	T	SNP	GP6	ENST00000310373	human	ensembl	74_37	-1	known	missense	c.85	p.S29T	0.924	NULL	smart_Ig_sub,smart_Ig_sub2	-	no_errors	GP6	HGNC	ENSG00000088053				21	0	0	9	6	40
SUV420H2	0	genome.wustl.edu	37	19	55855158	55855158	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	19	55855158	55855158	C	A	SNP	SUV420H2	ENST00000255613	human	ensembl	74_37	+1	known	missense	c.497	p.T166N	0.998	pfam_SET_dom,smart_SET_dom	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	-	no_errors	SUV420H2	HGNC	ENSG00000133247				23	0	0	10	7	41.1765
MBD3L1	0	genome.wustl.edu	37	19	8953560	8953560	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	19	8953560	8953560	G	T	SNP	MBD3L1	ENST00000305625	human	ensembl	74_37	+1	known	missense	c.206	p.R69M	0.972	NULL	NULL	-	no_errors	MBD3L1	HGNC	ENSG00000170948				72	0	0	33	14	29.7872
LONRF2	0	genome.wustl.edu	37	2	100906807	100906807	+	Silent	SNP	C	C	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	2	100906807	100906807	C	T	SNP	LONRF2	ENST00000393437	human	ensembl	74_37	-1	known	silent	c.1833	p.A611	0.000	pfam_Pept_S16_N,superfamily_PUA-like_domain,smart_Pept_S16_N	pfam_Pept_S16_N,pfam_Znf_C3HC4_RING-type,superfamily_PUA-like_domain,smart_Znf_RING,smart_TPR_repeat,smart_Pept_S16_N,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	LONRF2	HGNC	ENSG00000170500				146	0	0	50	17	25.3731
TMEM185B	0	genome.wustl.edu	37	2	120979791	120979791	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	2	120979791	120979791	T	G	SNP	TMEM185B	ENST00000426077	human	ensembl	74_37	-1	known	missense	c.762	p.L254F	0.002	NULL	pfam_TM_Fragile-X-F-assoc	-	no_errors	TMEM185B	HGNC	ENSG00000226479				8	0	0	4	5	55.5556
SLC4A10	0	genome.wustl.edu	37	2	162738866	162738866	+	Splice_Site	SNP	G	G	C			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	2	162738866	162738866	G	C	SNP	SLC4A10	ENST00000446997	human	ensembl	74_37	+1	known	splice_site	c.1107-1	e10-1	1.000	-	-	-	no_errors	SLC4A10	HGNC	ENSG00000144290				18	0	0	14	3	17.6471
PXDN	0	genome.wustl.edu	37	2	1691444	1691444	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	2	1691444	1691444	C	T	SNP	PXDN	ENST00000252804	human	ensembl	74_37	-1	known	missense	c.376	p.D126N	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDN	HGNC	ENSG00000130508				22	0	0	11	7	38.8889
MYO3B	0	genome.wustl.edu	37	2	171264299	171264299	+	Silent	SNP	A	A	G			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	2	171264299	171264299	A	G	SNP	MYO3B	ENST00000334231	human	ensembl	74_37	+1	known	silent	c.2622	p.R874	0.944	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3B	HGNC	ENSG00000071909				201	0	0	139	33	19.186
NCKAP1	0	genome.wustl.edu	37	2	183843619	183843619	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	2	183843619	183843619	C	G	SNP	NCKAP1	ENST00000360982	human	ensembl	74_37	-1	known	missense	c.1384	p.E462Q	1.000	pfam_Nck-associated_protein-1	pfam_Nck-associated_protein-1	-	no_errors	NCKAP1	HGNC	ENSG00000061676				46	0	0	23	2	8
FSIP2	0	genome.wustl.edu	37	2	186671020	186671020	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	2	186671020	186671020	C	T	SNP	FSIP2	ENST00000343098	human	ensembl	74_37	+1	known	nonsense	c.17254	p.Q5752*	0.000	NULL	NULL	-	no_errors	FSIP2	HGNC	ENSG00000188738				43	0	0	41	8	16.3265
DNAH7	0	genome.wustl.edu	37	2	196756511	196756511	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	2	196756511	196756511	G	T	SNP	DNAH7	ENST00000312428	human	ensembl	74_37	-1	known	missense	c.4914	p.N1638K	1.000	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_hand_dom	-	no_errors	DNAH7	HGNC	ENSG00000118997				45	0	0	22	9	29.0323
SMARCAL1	0	genome.wustl.edu	37	2	217285023	217285023	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	2	217285023	217285023	G	A	SNP	SMARCAL1	ENST00000357276	human	ensembl	74_37	+1	known	missense	c.864	p.M288I	1.000	pfam_HARP_dom	pfam_HARP_dom,pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCAL1	HGNC	ENSG00000138375				31	0	0	19	3	13.6364
C2orf62	0	genome.wustl.edu	37	2	219231774	219231774	+	Silent	SNP	C	C	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	2	219231774	219231774	C	T	SNP	C2orf62	ENST00000289388	human	ensembl	74_37	+1	known	silent	c.783	p.G261	1.000	NULL	superfamily_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	C2orf62	HGNC	ENSG00000158428				38	0	0	19	9	32.1429
DNER	0	genome.wustl.edu	37	2	230282862	230282862	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	2	230282862	230282862	A	T	SNP	DNER	ENST00000341772	human	ensembl	74_37	-1	known	missense	c.1571	p.V524D	0.552	pfam_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_EG-like_dom,pfam_EGF_extracell,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	DNER	HGNC	ENSG00000187957				69	0	0	31	7	18.4211
CAD	0	genome.wustl.edu	37	2	27456582	27456582	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	2	27456582	27456582	A	G	SNP	CAD	ENST00000264705	human	ensembl	74_37	+1	known	missense	c.3305	p.Y1102C	1.000	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_ATP-grasp_carboxylate-amine,pfam_Dala_Dala_lig_C,pfscan_ATP-grasp,tigrfam_CarbamoylP_synth_lsu	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_Asp/Orn_carbamoyltranf_P-bd,pfam_GATASE,pfam_Asp_carbamoyltransf_Asp/Orn-bd,pfam_CarbamoylP_synth_lsu_oligo,pfam_CarbamoylP_synth_lsu_N,pfam_ATP-grasp_carboxylate-amine,pfam_MGS-like_dom,pfam_Dala_Dala_lig_C,pfam_Amidohydro_1,superfamily_Asp/Orn_carbamoylTrfase,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_dom,superfamily_MGS-like_dom,superfamily_Metal-dep_hydrolase_composite,smart_MGS-like_dom,pfscan_ATP-grasp,prints_CbamoylP_synth_lsu_CPSase_dom,prints_Asp_carbamoyltransf,prints_Asp/Orn_carbamoylTrfase,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu,tigrfam_Asp_carbamoyltransf	-	no_errors	CAD	HGNC	ENSG00000084774				59	0	0	24	13	35.1351
ATP6V1B1	0	genome.wustl.edu	37	2	71191631	71191631	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	2	71191631	71191631	G	A	SNP	ATP6V1B1	ENST00000234396	human	ensembl	74_37	+1	known	missense	c.1207	p.G403S	1.000	superfamily_ATPase_F1/V1/A1-cplx_a/bsu_C,tigrfam_ATPase_V1-cplx_bsu	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,pfam_ATPase_F1/V1/A1-cplx_a/bsu_C,pfam_ATPase_F1_a/bsu_N,superfamily_P-loop_NTPase,superfamily_ATPase_F1_a/bsu_N,superfamily_ATPase_F1/V1/A1-cplx_a/bsu_C,tigrfam_ATPase_V1-cplx_bsu	-	no_errors	ATP6V1B1	HGNC	ENSG00000116039				63	0	0	29	9	23.6842
SMYD5	0	genome.wustl.edu	37	2	73453064	73453064	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	2	73453064	73453064	C	T	SNP	SMYD5	ENST00000389501	human	ensembl	74_37	+1	known	missense	c.1247	p.T416I	1.000	NULL	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	-	no_errors	SMYD5	HGNC	ENSG00000135632				43	0	0	24	4	14.2857
KIDINS220	0	genome.wustl.edu	37	2	8891763	8891763	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	2	8891763	8891763	T	A	SNP	KIDINS220	ENST00000256707	human	ensembl	74_37	-1	known	missense	c.3023	p.N1008I	1.000	NULL	pfam_KAP_NTPase,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KIDINS220	HGNC	ENSG00000134313				46	0	0	29	10	25.641
TMEM131	0	genome.wustl.edu	37	2	98428986	98428986	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	2	98428986	98428986	G	C	SNP	TMEM131	ENST00000186436	human	ensembl	74_37	-1	known	missense	c.1761	p.D587E	0.996	NULL	pfam_DUF3651_TMEM131	-	no_errors	TMEM131	HGNC	ENSG00000075568				55	0	0	28	7	20
CST4	0	genome.wustl.edu	37	20	23667771	23667771	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	20	23667771	23667771	G	T	SNP	CST4	ENST00000217423	human	ensembl	74_37	-1	known	missense	c.296	p.P99H	0.199	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	CST4	HGNC	ENSG00000101441				117	0	0	50	15	23.0769
DLGAP4	0	genome.wustl.edu	37	20	35075294	35075294	+	Silent	SNP	C	C	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	20	35075294	35075294	C	T	SNP	DLGAP4	ENST00000339266	human	ensembl	74_37	+1	known	silent	c.1602	p.S534	1.000	NULL	pfam_GKAP	-	no_errors	DLGAP4	HGNC	ENSG00000080845				38	0	0	26	5	16.129
R3HDML	0	genome.wustl.edu	37	20	42973984	42973984	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	20	42973984	42973984	C	T	SNP	R3HDML	ENST00000217043	human	ensembl	74_37	+1	known	missense	c.595	p.R199W	0.045	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1	-	no_errors	R3HDML	HGNC	ENSG00000101074				126	0	0	120	16	11.7647
MATN4	0	genome.wustl.edu	37	20	43926977	43926977	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	20	43926977	43926977	C	T	SNP	MATN4	ENST00000372754	human	ensembl	74_37	-1	known	missense	c.1382	p.R461H	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_EGF-like_Ca-bd_dom,pfam_Matrilin_coiled-coil_trimer,smart_VWF_A,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_VWF_A	-	no_errors	MATN4	HGNC	ENSG00000124159				42	0	0	34	10	22.7273
ELMO2	0	genome.wustl.edu	37	20	45003240	45003240	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	20	45003240	45003240	G	A	SNP	ELMO2	ENST00000439931	human	ensembl	74_37	-1	known	missense	c.1141	p.P381S	1.000	pfam_Engulfment_cell_motility_ELMO	pfam_DUF3361,pfam_Engulfment_cell_motility_ELMO,superfamily_ARM-type_fold	-	no_errors	ELMO2	HGNC	ENSG00000062598				59	0	0	45	7	13.4615
ZFP64	0	genome.wustl.edu	37	20	50701719	50701719	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	20	50701719	50701719	C	A	SNP	ZFP64	ENST00000361387	human	ensembl	74_37	-1	known	nonsense	c.1315	p.E439*	1.000	pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP64	HGNC	ENSG00000020256				56	0	0	67	7	9.45946
ZFP64	0	genome.wustl.edu	37	20	50701720	50701720	+	Silent	SNP	C	C	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	20	50701720	50701720	C	A	SNP	ZFP64	ENST00000361387	human	ensembl	74_37	-1	known	silent	c.1314	p.G438	0.998	pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP64	HGNC	ENSG00000020256				57	0	0	68	7	9.33333
LAMA5	0	genome.wustl.edu	37	20	60909066	60909066	+	Silent	SNP	G	G	C			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	20	60909066	60909066	G	C	SNP	LAMA5	ENST00000252999	human	ensembl	74_37	-1	known	silent	c.2769	p.T923	1.000	NULL	pfam_EGF_laminin,pfam_Laminin_I,pfam_Laminin_G,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	LAMA5	HGNC	ENSG00000130702				17	0	0	22	8	26.6667
GSTT2	0	genome.wustl.edu	37	22	24323218	24323218	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	22	24323218	24323218	G	C	SNP	GSTT2	ENST00000215780	human	ensembl	74_37	+1	known	missense	c.192	p.L64F	0.005	pfam_Glutathione_S-Trfase_N,superfamily_Thioredoxin-like_fold	pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold	-	no_errors	GSTT2	HGNC	ENSG00000099984				168	0	0	65	18	21.6867
PES1	0	genome.wustl.edu	37	22	30975222	30975222	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	22	30975222	30975222	C	G	SNP	PES1	ENST00000354694	human	ensembl	74_37	-1	known	missense	c.1423	p.G475R	0.686	NULL	pfam_Pescadillo,pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	PES1	HGNC	ENSG00000100029				26	0	0	13	11	45.8333
C3orf17	0	genome.wustl.edu	37	3	112732835	112732835	+	Silent	SNP	G	G	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	3	112732835	112732835	G	T	SNP	C3orf17	ENST00000314400	human	ensembl	74_37	-1	known	silent	c.306	p.G102	0.314	NULL	NULL	-	no_errors	C3orf17	HGNC	ENSG00000163608				298	1	0.334448	134	38	22.093
NR1I2	0	genome.wustl.edu	37	3	119501683	119501683	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	3	119501683	119501683	G	A	SNP	NR1I2	ENST00000337940	human	ensembl	74_37	+1	known	missense	c.79	p.E27K	0.000	NULL	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	NR1I2	HGNC	ENSG00000144852				50	0	0	19	5	20.8333
H1FX	0	genome.wustl.edu	37	3	129034479	129034479	+	Silent	SNP	G	G	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	3	129034479	129034479	G	A	SNP	H1FX	ENST00000333762	human	ensembl	74_37	-1	known	silent	c.267	p.L89	1.000	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15,prints_Histone_H5	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15,prints_Histone_H5	-	no_errors	H1FX	HGNC	ENSG00000184897				11	0	0	5	3	37.5
EPHB1	0	genome.wustl.edu	37	3	134873004	134873004	+	Silent	SNP	C	C	G			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	3	134873004	134873004	C	G	SNP	EPHB1	ENST00000398015	human	ensembl	74_37	+1	known	silent	c.1308	p.T436	0.931	pirsf_Tyr_kinase_ephrin_rcpt,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHB1	HGNC	ENSG00000154928				238	0	0	149	9	5.6962
SLC35G2	0	genome.wustl.edu	37	3	136573484	136573484	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	3	136573484	136573484	T	C	SNP	SLC35G2	ENST00000393079	human	ensembl	74_37	+1	known	missense	c.182	p.M61T	0.996	NULL	pfam_DMT	-	no_errors	SLC35G2	HGNC	ENSG00000168917				151	0	0	65	31	32.2917
SOX14	0	genome.wustl.edu	37	3	137483819	137483819	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	3	137483819	137483819	C	T	SNP	SOX14	ENST00000306087	human	ensembl	74_37	+1	known	missense	c.193	p.R65C	1.000	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	pfam_HMG_box_dom,pfam_TF_SOX,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX14	HGNC	ENSG00000168875				52	0	0	33	7	17.5
CCDC174	0	genome.wustl.edu	37	3	14712448	14712448	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	3	14712448	14712448	C	G	SNP	CCDC174	ENST00000383794	human	ensembl	74_37	+1	known	missense	c.1151	p.A384G	1.000	NULL	NULL	-	no_errors	CCDC174	HGNC	ENSG00000154781				52	0	0	24	4	14.2857
MECOM	0	genome.wustl.edu	37	3	168833682	168833682	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	3	168833682	168833682	C	G	SNP	MECOM	ENST00000494292	human	ensembl	74_37	-1	known	missense	c.1978	p.D660H	1.000	NULL	pfam_Znf_C2H2,pfam_Znf_BED_prd,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	MECOM	HGNC	ENSG00000085276				108	0	0	106	15	12.3967
MYNN	0	genome.wustl.edu	37	3	169492270	169492270	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	3	169492270	169492270	C	G	SNP	MYNN	ENST00000349841	human	ensembl	74_37	+1	known	missense	c.187	p.L63V	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	MYNN	HGNC	ENSG00000085274				125	0	0	127	49	27.8409
TTC14	0	genome.wustl.edu	37	3	180321029	180321029	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	3	180321029	180321029	C	G	SNP	TTC14	ENST00000296015	human	ensembl	74_37	+1	known	missense	c.404	p.S135C	0.998	superfamily_NA-bd_OB-fold,pfscan_Rbsml_prot_S1_RNA-bd_dom	pfam_TPR_1,superfamily_NA-bd_OB-fold,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	TTC14	HGNC	ENSG00000163728				138	0	0	120	34	22.0779
TTC14	0	genome.wustl.edu	37	3	180321108	180321108	+	Silent	SNP	C	C	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	3	180321108	180321108	C	T	SNP	TTC14	ENST00000296015	human	ensembl	74_37	+1	known	silent	c.483	p.I161	1.000	superfamily_NA-bd_OB-fold,pfscan_Rbsml_prot_S1_RNA-bd_dom	pfam_TPR_1,superfamily_NA-bd_OB-fold,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	TTC14	HGNC	ENSG00000163728				89	0	0	91	20	18.018
TTC14	0	genome.wustl.edu	37	3	180322068	180322068	+	Nonsense_Mutation	SNP	C	C	G			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	3	180322068	180322068	C	G	SNP	TTC14	ENST00000296015	human	ensembl	74_37	+1	known	nonsense	c.542	p.S181*	0.999	superfamily_NA-bd_OB-fold,pfscan_Rbsml_prot_S1_RNA-bd_dom	pfam_TPR_1,superfamily_NA-bd_OB-fold,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	TTC14	HGNC	ENSG00000163728				83	0	0	53	15	22.0588
CCDC39	0	genome.wustl.edu	37	3	180397081	180397081	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	3	180397081	180397081	G	A	SNP	CCDC39	ENST00000442201	human	ensembl	74_37	-1	known	nonsense	c.88	p.Q30*	0.100	superfamily_tRNA-bd_arm	superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	CCDC39	HGNC	ENSG00000145075				130	0	0	112	19	14.5038
DVL3	0	genome.wustl.edu	37	3	183884726	183884726	+	Silent	SNP	C	C	G			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	3	183884726	183884726	C	G	SNP	DVL3	ENST00000313143	human	ensembl	74_37	+1	known	silent	c.1161	p.T387	1.000	NULL	pfam_Dishevelled_C-dom,pfam_DIX,pfam_Dishevelled_protein_dom,pfam_PDZ,pfam_DEP_dom,superfamily_PDZ,smart_DIX,smart_PDZ,smart_DEP_dom,pfscan_DEP_dom,pfscan_DIX,pfscan_PDZ,prints_Dishevelled_fam,prints_Dishevelled_3	-	no_errors	DVL3	HGNC	ENSG00000161202				99	0	0	77	14	15.3846
FGF12	0	genome.wustl.edu	37	3	192053245	192053245	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	3	192053245	192053245	T	G	SNP	FGF12	ENST00000454309	human	ensembl	74_37	-1	known	missense	c.319	p.N107H	1.000	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_Fibroblast_GF_fam	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam,prints_Fibroblast_GF_fam	-	no_errors	FGF12	HGNC	ENSG00000114279				81	0	0	56	15	21.1268
MUC4	0	genome.wustl.edu	37	3	195515113	195515113	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	3	195515113	195515113	A	G	SNP	MUC4	ENST00000463781	human	ensembl	74_37	-1	known	missense	c.3338	p.V1113A	0.000	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EG-like_dom,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113				27	0	0	41	3	6.81818
TGFBR2	0	genome.wustl.edu	37	3	30729923	30729923	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	3	30729923	30729923	C	A	SNP	TGFBR2	ENST00000359013	human	ensembl	74_37	+1	known	missense	c.1519	p.P507T	1.000	pirsf_Transform_growth_fac-b_typ-2,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Transform_growth_fac-b_typ-2,pfam_Transforming_GF_b_rcpt_2_ecto,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_TGFB_receptor,pfscan_Prot_kinase_dom	-	no_errors	TGFBR2	HGNC	ENSG00000163513				127	0	0	33	12	26.6667
CSRNP1	0	genome.wustl.edu	37	3	39186708	39186708	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	3	39186708	39186708	C	A	SNP	CSRNP1	ENST00000273153	human	ensembl	74_37	-1	known	missense	c.245	p.G82V	0.178	NULL	prints_Cys/Ser-rich_nuc_prot	-	no_errors	CSRNP1	HGNC	ENSG00000144655				38	0	0	25	8	24.2424
LYZL4	0	genome.wustl.edu	37	3	42445586	42445586	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	3	42445586	42445586	A	C	SNP	LYZL4	ENST00000287748	human	ensembl	74_37	-1	known	missense	c.323	p.I108S	1.000	pfam_Glyco_hydro_22,superfamily_Lysozyme-like_dom,smart_Glyco_hydro_22,prints_Glyco_hydro_22,prints_Glyco_hydro_22_lys	pfam_Glyco_hydro_22,superfamily_Lysozyme-like_dom,smart_Glyco_hydro_22,prints_Glyco_hydro_22,prints_Glyco_hydro_22_lys	-	no_errors	LYZL4	HGNC	ENSG00000157093				77	0	0	31	9	22.5
CHL1	0	genome.wustl.edu	37	3	432428	432428	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	3	432428	432428	A	C	SNP	CHL1	ENST00000256509	human	ensembl	74_37	+1	known	missense	c.2515	p.S839R	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CHL1	HGNC	ENSG00000134121				69	0	0	21	30	58.8235
SETD2	0	genome.wustl.edu	37	3	47098523	47098523	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	3	47098523	47098523	C	G	SNP	SETD2	ENST00000409792	human	ensembl	74_37	-1	known	missense	c.6751	p.D2251H	1.000	NULL	pfam_SRI,pfam_SET_dom,pfam_WW_dom,superfamily_WW_dom,superfamily_Ferritin-like_SF,smart_AWS,smart_SET_dom,smart_Post-SET_dom,smart_WW_dom,pfscan_AWS,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_WW_dom	-	no_errors	SETD2	HGNC	ENSG00000181555				58	0	0	20	5	20
ITPR1	0	genome.wustl.edu	37	3	4810221	4810221	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	3	4810221	4810221	G	A	SNP	ITPR1	ENST00000302640	human	ensembl	74_37	+1	known	missense	c.5707	p.E1903K	1.000	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR1	HGNC	ENSG00000150995				35	0	0	16	5	23.8095
FAM212A	0	genome.wustl.edu	37	3	49842367	49842367	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	3	49842367	49842367	A	T	SNP	FAM212A	ENST00000333323	human	ensembl	74_37	+1	known	missense	c.811	p.M271L	1.000	NULL	NULL	-	no_errors	FAM212A	HGNC	ENSG00000185614				112	0	0	60	23	27.7108
DOCK3	0	genome.wustl.edu	37	3	50971444	50971444	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	3	50971444	50971444	C	A	SNP	DOCK3	ENST00000266037	human	ensembl	74_37	+1	known	missense	c.251	p.S84Y	1.000	NULL	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538				45	0	0	20	5	20
ALAS1	0	genome.wustl.edu	37	3	52240613	52240613	+	Silent	SNP	G	G	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	3	52240613	52240613	G	A	SNP	ALAS1	ENST00000310271	human	ensembl	74_37	+1	known	silent	c.1011	p.G337	1.000	pfam_Aminotransferase_I/II,pfam_Cys/Met-Metab_PyrdxlP-dep_enz,pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase,tigrfam_4pyrrol_synth_NH2levulA_synth	pfam_Aminotransferase_I/II,pfam_5aminolev_synth_preseq,pfam_Cys/Met-Metab_PyrdxlP-dep_enz,pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase,tigrfam_4pyrrol_synth_NH2levulA_synth	-	no_errors	ALAS1	HGNC	ENSG00000023330				184	0	0	84	30	26.3158
PTPRG	0	genome.wustl.edu	37	3	62253086	62253086	+	Silent	SNP	T	T	C			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	3	62253086	62253086	T	C	SNP	PTPRG	ENST00000474889	human	ensembl	74_37	+1	known	silent	c.2658	p.Y886	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRG	HGNC	ENSG00000144724				75	0	0	37	18	32.7273
TRIM60	0	genome.wustl.edu	37	4	165962340	165962340	+	Silent	SNP	T	T	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	4	165962340	165962340	T	A	SNP	TRIM60	ENST00000341062	human	ensembl	74_37	+1	known	silent	c.1116	p.L372	0.001	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,pfam_Znf_B-box,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM60	HGNC	ENSG00000176979				125	0	0	66	18	21.4286
HAUS3	0	genome.wustl.edu	37	4	2242050	2242050	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	4	2242050	2242050	C	G	SNP	HAUS3	ENST00000243706	human	ensembl	74_37	-1	known	missense	c.624	p.E208D	1.000	NULL	NULL	-	no_errors	HAUS3	HGNC	ENSG00000214367				10	0	0	4	5	55.5556
OTOP1	0	genome.wustl.edu	37	4	4199436	4199436	+	Silent	SNP	G	G	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	4	4199436	4199436	G	A	SNP	OTOP1	ENST00000296358	human	ensembl	74_37	-1	known	silent	c.1125	p.D375	0.000	pfam_Otopetrin	pfam_Otopetrin	-	no_errors	OTOP1	HGNC	ENSG00000163982				73	0	0	27	11	28.9474
GPRIN3	0	genome.wustl.edu	37	4	90170468	90170468	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	4	90170468	90170468	G	T	SNP	GPRIN3	ENST00000333209	human	ensembl	74_37	-1	known	missense	c.794	p.P265H	0.000	NULL	NULL	-	no_errors	GPRIN3	HGNC	ENSG00000185477				66	0	0	18	17	48.5714
CEP120	0	genome.wustl.edu	37	5	122724215	122724215	+	Silent	SNP	T	T	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	5	122724215	122724215	T	A	SNP	CEP120	ENST00000306467	human	ensembl	74_37	-1	known	silent	c.1341	p.V447	0.997	NULL	pfam_DUF3668,superfamily_C2_dom	-	no_errors	CEP120	HGNC	ENSG00000168944				178	1	0.558659	83	58	41.1348
HARS	0	genome.wustl.edu	37	5	140056692	140056692	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	5	140056692	140056692	G	C	SNP	HARS	ENST00000504156	human	ensembl	74_37	-1	known	missense	c.833	p.S278C	0.988	pirsf_HisRS/HisZ,pfscan_aa-tRNA-synth_II,tigrfam_His-tRNA-ligase	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_WHEP-TRS,superfamily_Anticodon-bd,superfamily_S15_NS1_RNA-bd,pirsf_HisRS/HisZ,pfscan_aa-tRNA-synth_II,pfscan_WHEP-TRS,tigrfam_His-tRNA-ligase	-	no_errors	HARS	HGNC	ENSG00000170445				239	0	0	129	39	23.2143
PCDHB1	0	genome.wustl.edu	37	5	140431212	140431212	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	5	140431212	140431212	G	C	SNP	PCDHB1	ENST00000306549	human	ensembl	74_37	+1	known	missense	c.157	p.G53R	0.997	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB1	HGNC	ENSG00000171815				39	0	0	38	2	5
ARAP3	0	genome.wustl.edu	37	5	141033869	141033869	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	5	141033869	141033869	G	A	SNP	ARAP3	ENST00000239440	human	ensembl	74_37	-1	known	missense	c.4283	p.T1428I	0.000	NULL	pfam_RhoGAP_dom,pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ras-assoc,pfam_SAM_2,pfam_SAM_type1,superfamily_Rho_GTPase_activation_prot,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP3	HGNC	ENSG00000120318				81	0	0	15	22	59.4595
SPARC	0	genome.wustl.edu	37	5	151043744	151043744	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	5	151043744	151043744	C	T	SNP	SPARC	ENST00000231061	human	ensembl	74_37	-1	known	missense	c.787	p.E263K	1.000	pfam_SPARC/Testican_Ca-bd-dom	pfam_SPARC/Testican_Ca-bd-dom,pfam_Follistatin/Osteonectin_EGF,pfam_Kazal_dom,smart_Fol_N,smart_Kazal_dom	-	no_errors	SPARC	HGNC	ENSG00000113140				52	0	0	16	17	51.5152
DOCK2	0	genome.wustl.edu	37	5	169141060	169141060	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	5	169141060	169141060	G	A	SNP	DOCK2	ENST00000256935	human	ensembl	74_37	+1	known	missense	c.1688	p.S563N	0.996	NULL	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_Cyt_c-like_dom,superfamily_ARM-type_fold,superfamily_Ferritin-like_SF,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK2	HGNC	ENSG00000134516				75	0	0	41	4	8.88889
DOCK2	0	genome.wustl.edu	37	5	169141061	169141061	+	Silent	SNP	C	C	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	5	169141061	169141061	C	T	SNP	DOCK2	ENST00000256935	human	ensembl	74_37	+1	known	silent	c.1689	p.S563	0.011	NULL	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_Cyt_c-like_dom,superfamily_ARM-type_fold,superfamily_Ferritin-like_SF,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK2	HGNC	ENSG00000134516				72	0	0	41	4	8.88889
FOXI1	0	genome.wustl.edu	37	5	169533040	169533040	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	5	169533040	169533040	G	A	SNP	FOXI1	ENST00000306268	human	ensembl	74_37	+1	known	missense	c.79	p.E27K	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXI1	HGNC	ENSG00000168269				15	0	0	5	5	50
SLC45A2	0	genome.wustl.edu	37	5	33951616	33951616	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	5	33951616	33951616	C	G	SNP	SLC45A2	ENST00000345083	human	ensembl	74_37	-1	known	missense	c.875	p.W292S	0.000	NULL	superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A2	HGNC	ENSG00000164175				172	0	0	87	28	24.3478
ADAMTS16	0	genome.wustl.edu	37	5	5200343	5200343	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	5	5200343	5200343	G	T	SNP	ADAMTS16	ENST00000274181	human	ensembl	74_37	+1	known	missense	c.1412	p.W471L	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS16	HGNC	ENSG00000145536				48	0	0	38	11	22.449
MOCS2	0	genome.wustl.edu	37	5	52397195	52397195	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	5	52397195	52397195	C	T	SNP	MOCS2	ENST00000396954	human	ensembl	74_37	-1	known	missense	c.371	p.R124K	1.000	pfam_Mopterin_biosynth_MoaE,superfamily_Mopterin_biosynth_MoaE	pfam_Mopterin_biosynth_MoaE,superfamily_Mopterin_biosynth_MoaE	-	no_errors	MOCS2	HGNC	ENSG00000164172				114	0	0	88	12	12
BDP1	0	genome.wustl.edu	37	5	70820113	70820113	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	5	70820113	70820113	A	C	SNP	BDP1	ENST00000358731	human	ensembl	74_37	+1	known	missense	c.5735	p.E1912A	1.000	NULL	superfamily_Homeodomain-like,smart_SANT/Myb	-	no_errors	BDP1	HGNC	ENSG00000145734				97	0	0	61	14	18.6667
RASGRF2	0	genome.wustl.edu	37	5	80476075	80476075	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	5	80476075	80476075	G	T	SNP	RASGRF2	ENST00000265080	human	ensembl	74_37	+1	known	missense	c.2768	p.R923L	1.000	pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,superfamily_DH-domain,smart_Pleckstrin_homology,smart_DH-domain,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRF2	HGNC	ENSG00000113319				160	0	0	79	62	43.9716
VCAN	0	genome.wustl.edu	37	5	82876166	82876166	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	5	82876166	82876166	A	C	SNP	VCAN	ENST00000265077	human	ensembl	74_37	+1	known	missense	c.10104	p.K3368N	1.000	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_EG-like_dom,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Link,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link	-	no_errors	VCAN	HGNC	ENSG00000038427				64	0	0	51	14	21.5385
RTN4IP1	0	genome.wustl.edu	37	6	107067186	107067186	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	6	107067186	107067186	T	G	SNP	RTN4IP1	ENST00000369063	human	ensembl	74_37	-1	known	missense	c.511	p.K171Q	1.000	superfamily_GroES-like,smart_PKS_ER	pfam_ADH_C,pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER	-	no_errors	RTN4IP1	HGNC	ENSG00000130347				72	0	0	27	11	28.9474
FIG4	0	genome.wustl.edu	37	6	110048374	110048374	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	6	110048374	110048374	G	A	SNP	FIG4	ENST00000230124	human	ensembl	74_37	+1	known	missense	c.352	p.D118N	1.000	pfam_Syja_N	pfam_Syja_N,pfscan_Syja_N	-	no_errors	FIG4	HGNC	ENSG00000112367				173	1	0.574713	49	25	33.7838
NEDD9	0	genome.wustl.edu	37	6	11191199	11191199	+	Silent	SNP	G	G	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	6	11191199	11191199	G	A	SNP	NEDD9	ENST00000379446	human	ensembl	74_37	-1	known	silent	c.903	p.H301	0.000	NULL	pfam_CAS_DUF3513,pfam_Serine_rich,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	NEDD9	HGNC	ENSG00000111859				81	0	0	20	16	44.4444
ATXN1	0	genome.wustl.edu	37	6	16327558	16327558	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	6	16327558	16327558	C	T	SNP	ATXN1	ENST00000244769	human	ensembl	74_37	-1	known	missense	c.984	p.M328I	1.000	NULL	pfam_Ataxin-1_HBP1,pfam_Capicua_tscrpt_rep_mod,superfamily_Ataxin-1_HBP1,smart_Ataxin_AXH_dom,pfscan_Ataxin-1_HBP1	-	no_errors	ATXN1	HGNC	ENSG00000124788				41	0	0	15	22	59.4595
POM121L2	0	genome.wustl.edu	37	6	27278557	27278557	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	6	27278557	27278557	A	C	SNP	POM121L2	ENST00000444565	human	ensembl	74_37	-1	known	missense	c.1393	p.F465V	0.000	NULL	NULL	-	no_errors	POM121L2	HGNC	ENSG00000158553				9	0	0	7	3	30
LINC00243	0	genome.wustl.edu	37	6	30782235	30782235	+	RNA	SNP	G	G	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	6	30782235	30782235	G	A	SNP	LINC00243	ENST00000399196	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	LINC00243	HGNC	ENSG00000214894				11	0	0	5	11	68.75
MUC21	0	genome.wustl.edu	37	6	30955089	30955089	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	6	30955089	30955089	G	C	SNP	MUC21	ENST00000376296	human	ensembl	74_37	+1	known	missense	c.1137	p.E379D	0.000	NULL	NULL	-	no_errors	MUC21	HGNC	ENSG00000204544				174	1	0.571429	70	16	18.6047
TNXB	0	genome.wustl.edu	37	6	32032696	32032696	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	6	32032696	32032696	G	A	SNP	TNXB	ENST00000375247	human	ensembl	74_37	-1	known	missense	c.6743	p.T2248I	0.999	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477				29	0	0	12	30	71.4286
TREML2	0	genome.wustl.edu	37	6	41162572	41162572	+	Splice_Site	SNP	C	C	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	6	41162572	41162572	C	T	SNP	TREML2	ENST00000483722	human	ensembl	74_37	-1	known	splice_site	c.377-1	e3-1	0.600	-	-	-	no_errors	TREML2	HGNC	ENSG00000112195				52	0	0	17	10	37.037
ZNF318	0	genome.wustl.edu	37	6	43323884	43323884	+	Splice_Site	SNP	C	C	G			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	6	43323884	43323884	C	G	SNP	ZNF318	ENST00000361428	human	ensembl	74_37	-1	known	splice_site	c.1189-1	e4-1	1.000	-	-	-	no_errors	ZNF318	HGNC	ENSG00000171467				63	0	0	46	11	19.2982
RREB1	0	genome.wustl.edu	37	6	7211167	7211167	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	6	7211167	7211167	G	A	SNP	RREB1	ENST00000379938	human	ensembl	74_37	+1	known	missense	c.556	p.A186T	0.925	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RREB1	HGNC	ENSG00000124782				211	1	0.471698	116	7	5.69106
SLC35A1	0	genome.wustl.edu	37	6	88210354	88210354	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	6	88210354	88210354	C	G	SNP	SLC35A1	ENST00000369552	human	ensembl	74_37	+1	known	missense	c.323	p.A108G	1.000	pfam_Nuc_sug_transpt,pirsf_UDP/CMP-sugar_transptr,tigrfam_UDPgal_transpt	pfam_Nuc_sug_transpt,pfam_UAA,pirsf_UDP/CMP-sugar_transptr,tigrfam_UDPgal_transpt	-	no_errors	SLC35A1	HGNC	ENSG00000164414				77	0	0	21	12	36.3636
GIGYF1	0	genome.wustl.edu	37	7	100283967	100283967	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	7	100283967	100283967	C	G	SNP	GIGYF1	ENST00000275732	human	ensembl	74_37	-1	known	missense	c.784	p.G262R	1.000	NULL	pfam_GYF,superfamily_GYF,smart_GYF,pfscan_GYF	-	no_errors	GIGYF1	HGNC	ENSG00000146830				46	0	0	37	7	15.9091
COG5	0	genome.wustl.edu	37	7	106871079	106871079	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	7	106871079	106871079	G	C	SNP	COG5	ENST00000297135	human	ensembl	74_37	-1	known	missense	c.2242	p.R748G	1.000	NULL	pfam_Cog5	-	no_errors	COG5	HGNC	ENSG00000164597				197	0	0	120	36	23.0769
CAV1	0	genome.wustl.edu	37	7	116199067	116199067	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	7	116199067	116199067	G	C	SNP	CAV1	ENST00000341049	human	ensembl	74_37	+1	known	missense	c.263	p.S88T	1.000	pfam_Caveolin	pfam_Caveolin	-	no_errors	CAV1	HGNC	ENSG00000105974				51	0	0	38	6	13.6364
PLXNA4	0	genome.wustl.edu	37	7	132192842	132192842	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	7	132192842	132192842	A	C	SNP	PLXNA4	ENST00000321063	human	ensembl	74_37	-1	known	missense	c.611	p.L204R	1.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA4	HGNC	ENSG00000221866				121	0	0	56	16	22.2222
LUC7L2	0	genome.wustl.edu	37	7	139106914	139106914	+	Nonsense_Mutation	SNP	C	C	G			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	7	139106914	139106914	C	G	SNP	LUC7L2	ENST00000541515	human	ensembl	74_37	+1	known	nonsense	c.1205	p.S402*	1.000	NULL	pfam_Luc7-rel	-	no_errors	LUC7L2	HGNC	ENSG00000269955				66	0	0	32	19	37.2549
TAS2R60	0	genome.wustl.edu	37	7	143140947	143140947	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	7	143140947	143140947	G	T	SNP	TAS2R60	ENST00000332690	human	ensembl	74_37	+1	known	missense	c.402	p.K134N	0.004	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R60	HGNC	ENSG00000185899				138	0	0	127	24	15.894
KCNH2	0	genome.wustl.edu	37	7	150645985	150645985	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	7	150645985	150645985	G	C	SNP	KCNH2	ENST00000262186	human	ensembl	74_37	-1	known	missense	c.2551	p.H851D	1.000	superfamily_cNMP-bd-like,smart_cNMP-bd_dom	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_cNMP-bd_dom,pfam_PAS_fold,pfam_PAS_fold_3,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH2	HGNC	ENSG00000055118				70	0	0	31	9	22.5
INTS1	0	genome.wustl.edu	37	7	1538092	1538092	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	7	1538092	1538092	C	T	SNP	INTS1	ENST00000389470	human	ensembl	74_37	-1	known	missense	c.1765	p.V589I	1.000	NULL	pfam_DUF3677,superfamily_ARM-type_fold	-	no_errors	INTS1	HGNC	ENSG00000164880				23	0	0	20	3	13.0435
FGL2	0	genome.wustl.edu	37	7	76825675	76825675	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	7	76825675	76825675	C	A	SNP	FGL2	ENST00000248598	human	ensembl	74_37	-1	known	missense	c.1241	p.S414I	0.013	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	FGL2	HGNC	ENSG00000127951				52	0	0	41	9	18
SEMA3E	0	genome.wustl.edu	37	7	83021901	83021901	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	7	83021901	83021901	C	T	SNP	SEMA3E	ENST00000307792	human	ensembl	74_37	-1	known	missense	c.1637	p.R546Q	1.000	superfamily_Plexin-like_fold,smart_Plexin-like_fold	pfam_Semap_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA3E	HGNC	ENSG00000170381				69	0	0	60	13	17.8082
PPP1R9A	0	genome.wustl.edu	37	7	94750141	94750141	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	7	94750141	94750141	G	T	SNP	PPP1R9A	ENST00000289495	human	ensembl	74_37	+1	known	missense	c.1646	p.G549V	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_SAM_2,pfam_SAM_type1,pfam_PDZ,superfamily_PDZ,superfamily_SAM/pointed,superfamily_Smac_DIABLO-like,smart_PDZ,smart_SAM,pfscan_PDZ,pfscan_SAM	-	no_errors	PPP1R9A	HGNC	ENSG00000158528				140	1	0.70922	79	24	23.301
OR2AE1	0	genome.wustl.edu	37	7	99474447	99474447	+	Silent	SNP	A	A	G			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	7	99474447	99474447	A	G	SNP	OR2AE1	ENST00000316368	human	ensembl	74_37	-1	known	silent	c.210	p.D70	0.199	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2AE1	HGNC	ENSG00000244623				94	0	0	66	21	24.1379
RGS22	0	genome.wustl.edu	37	8	101105676	101105676	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	8	101105676	101105676	G	T	SNP	RGS22	ENST00000360863	human	ensembl	74_37	-1	known	missense	c.116	p.P39Q	1.000	NULL	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam	-	no_errors	RGS22	HGNC	ENSG00000132554				49	0	0	44	7	13.7255
PKHD1L1	0	genome.wustl.edu	37	8	110416883	110416883	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	8	110416883	110416883	G	C	SNP	PKHD1L1	ENST00000378402	human	ensembl	74_37	+1	known	missense	c.1474	p.D492H	1.000	NULL	pfam_IPT,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038				44	0	0	35	11	23.913
CSMD3	0	genome.wustl.edu	37	8	113694835	113694835	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	8	113694835	113694835	C	G	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	missense	c.2513	p.G838A	1.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				92	0	0	78	12	13.3333
ZNF16	0	genome.wustl.edu	37	8	146156265	146156265	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	8	146156265	146156265	T	A	SNP	ZNF16	ENST00000276816	human	ensembl	74_37	-1	known	missense	c.1908	p.K636N	0.405	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF16	HGNC	ENSG00000170631				105	0	0	80	21	20.7921
NAT2	0	genome.wustl.edu	37	8	18258347	18258347	+	Silent	SNP	T	T	C			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	8	18258347	18258347	T	C	SNP	NAT2	ENST00000286479	human	ensembl	74_37	+1	known	silent	c.834	p.N278	0.267	pfam_Arylamine_N-AcTrfase,prints_Arylamine_N-AcTrfase	pfam_Arylamine_N-AcTrfase,prints_Arylamine_N-AcTrfase	-	no_errors	NAT2	HGNC	ENSG00000156006				73	0	0	23	9	28.125
PRKDC	0	genome.wustl.edu	37	8	48697801	48697801	+	Silent	SNP	G	G	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	8	48697801	48697801	G	A	SNP	PRKDC	ENST00000314191	human	ensembl	74_37	-1	known	silent	c.10977	p.N3659	0.000	superfamily_Kinase-like_dom	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729				37	0	0	23	2	8
CPQ	0	genome.wustl.edu	37	8	97797143	97797143	+	Silent	SNP	C	C	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	8	97797143	97797143	C	T	SNP	CPQ	ENST00000220763	human	ensembl	74_37	+1	known	silent	c.18	p.F6	0.347	NULL	pfam_Peptidase_M28,pfam_Peptidase_M20	-	no_errors	CPQ	HGNC	ENSG00000104324				101	1	0.980392	67	20	22.9885
POP1	0	genome.wustl.edu	37	8	99148887	99148887	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	8	99148887	99148887	A	T	SNP	POP1	ENST00000349693	human	ensembl	74_37	+1	known	nonsense	c.1189	p.K397*	0.996	NULL	pfam_RNase_P/MRP_POP1,pfam_POPLD	-	no_errors	POP1	HGNC	ENSG00000104356				100	0	0	77	17	18.0851
CDK5RAP2	0	genome.wustl.edu	37	9	123330664	123330664	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	9	123330664	123330664	G	A	SNP	CDK5RAP2	ENST00000349780	human	ensembl	74_37	-1	known	missense	c.130	p.L44F	0.994	NULL	pfam_Spindle_assoc	-	no_errors	CDK5RAP2	HGNC	ENSG00000136861				132	0	0	76	45	37.1901
ASB6	0	genome.wustl.edu	37	9	132400887	132400887	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	9	132400887	132400887	T	C	SNP	ASB6	ENST00000277458	human	ensembl	74_37	-1	known	missense	c.563	p.H188R	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	-	no_errors	ASB6	HGNC	ENSG00000148331				33	0	0	18	9	33.3333
BRD3	0	genome.wustl.edu	37	9	136907050	136907050	+	Silent	SNP	G	G	C			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	9	136907050	136907050	G	C	SNP	BRD3	ENST00000303407	human	ensembl	74_37	-1	known	silent	c.1239	p.A413	1.000	superfamily_Bromodomain,smart_Bromodomain	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	BRD3	HGNC	ENSG00000169925				20	0	0	13	3	18.75
LOC100996870	0	genome.wustl.edu	37	9	66466232	66466232	+	RNA	SNP	C	C	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	9	66466232	66466232	C	A	SNP	LOC100996870	ENST00000424345	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP11-262H14.1	Clone_based_vega_gene	ENSG00000238113				37	0	0	26	4	13.3333
LOC100996870	0	genome.wustl.edu	37	9	66466234	66466234	+	RNA	SNP	G	G	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	9	66466234	66466234	G	A	SNP	LOC100996870	ENST00000424345	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	RP11-262H14.1	Clone_based_vega_gene	ENSG00000238113				35	0	0	25	4	13.7931
PRKACG	0	genome.wustl.edu	37	9	71628351	71628351	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	9	71628351	71628351	C	T	SNP	PRKACG	ENST00000377276	human	ensembl	74_37	-1	known	missense	c.658	p.V220M	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PRKACG	HGNC	ENSG00000165059				61	0	0	26	7	21.2121
IDNK	0	genome.wustl.edu	37	9	86258577	86258577	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	9	86258577	86258577	A	T	SNP	IDNK	ENST00000454393	human	ensembl	74_37	+1	known	missense	c.575	p.Q192L	1.000	superfamily_P-loop_NTPase,tigrfam_Therm_gnt_kin	pfam_Shikimate_kinase/TSH1,superfamily_P-loop_NTPase,tigrfam_Therm_gnt_kin	-	no_errors	IDNK	HGNC	ENSG00000148057				116	0	0	62	38	38
ZNF169	0	genome.wustl.edu	37	9	97062923	97062923	+	Silent	SNP	C	C	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	9	97062923	97062923	C	T	SNP	ZNF169	ENST00000395395	human	ensembl	74_37	+1	known	silent	c.1083	p.L361	0.042	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF169	HGNC	ENSG00000175787				80	0	0	46	8	14.8148
MT-RNR2	0	genome.wustl.edu	37	MT	2571	2571	+	RNA	SNP	G	G	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	MT	2571	2571	G	A	SNP	MT-RNR2	ENST00000387347	human	ensembl	74_37	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors	MT-RNR2	HGNC	ENSG00000210082				828	0	0	116	531	82.0711
GPRASP1	0	genome.wustl.edu	37	X	101911869	101911869	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	X	101911869	101911869	G	A	SNP	GPRASP1	ENST00000361600	human	ensembl	74_37	+1	known	missense	c.3028	p.D1010N	0.997	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	GPRASP1	HGNC	ENSG00000198932				74	0	0	20	23	53.4884
OCRL	0	genome.wustl.edu	37	X	128703265	128703265	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	X	128703265	128703265	G	C	SNP	OCRL	ENST00000371113	human	ensembl	74_37	+1	known	missense	c.1491	p.W497C	1.000	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	pfam_Endo/exonuclease/phosphatase,pfam_RhoGAP_dom,superfamily_Endo/exonuclease/phosphatase,superfamily_Rho_GTPase_activation_prot,smart_IPPc,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	OCRL	HGNC	ENSG00000122126				72	0	0	43	91	67.9104
FRMD7	0	genome.wustl.edu	37	X	131220027	131220027	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	X	131220027	131220027	T	A	SNP	FRMD7	ENST00000298542	human	ensembl	74_37	-1	known	nonsense	c.418	p.K140*	1.000	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM-adjacent,pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,prints_Band_41_fam,pfscan_FERM_domain	-	no_errors	FRMD7	HGNC	ENSG00000165694				85	0	0	22	108	83.0769
GLRA2	0	genome.wustl.edu	37	X	14592654	14592654	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	X	14592654	14592654	C	A	SNP	GLRA2	ENST00000355020	human	ensembl	74_37	+1	known	missense	c.243	p.S81R	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_Glycine_rcpt_A,prints_Glycine_rcpt_A2,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GLRA2	HGNC	ENSG00000101958				80	0	0	40	22	35.4839
DMD	0	genome.wustl.edu	37	X	31947780	31947780	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	X	31947780	31947780	G	A	SNP	DMD	ENST00000357033	human	ensembl	74_37	-1	known	missense	c.6845	p.P2282L	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947				63	0	0	24	18	42.8571
MXRA5	0	genome.wustl.edu	37	X	3235405	3235405	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	X	3235405	3235405	G	A	SNP	MXRA5	ENST00000217939	human	ensembl	74_37	-1	known	missense	c.6317	p.T2106M	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MXRA5	HGNC	ENSG00000101825				12	0	0	4	3	42.8571
DMD	0	genome.wustl.edu	37	X	32834625	32834625	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	X	32834625	32834625	A	G	SNP	DMD	ENST00000357033	human	ensembl	74_37	-1	known	missense	c.490	p.S164P	1.000	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pirsf_Dystrophin/utrophin,pfscan_CH-domain	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947				71	0	0	18	12	40
RGAG4	0	genome.wustl.edu	37	X	71350836	71350836	+	Silent	SNP	G	G	T			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	X	71350836	71350836	G	T	SNP	RGAG4	ENST00000479991	human	ensembl	74_37	-1	known	silent	c.555	p.A185	0.003	NULL	pfam_Retrotrans_gag_dom	-	no_errors	RGAG4	HGNC	ENSG00000242732				23	0	0	7	11	61.1111
GOLGA2P5	0	genome.wustl.edu	37	12	100550982	100550984	+	RNA	DEL	CTC	CTC	-			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	12	100550982	100550984	CTC	-	DEL	GOLGA2P5	ENST00000397112	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000:1.000:1.000	-	-	-	no_errors	GOLGA2B	Clone_based_vega_gene	ENSG00000238105				49	0	0	37	4	9.7561
SLCO1B3	0	genome.wustl.edu	37	12	21036480	21036485	+	In_Frame_Del	DEL	CATAAA	CATAAA	-			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	CATAAA	CATAAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	12	21036480	21036485	CATAAA	-	DEL	SLCO1B3	ENST00000553473	human	ensembl	74_37	+1	known	in_frame_del	c.1626_1631	p.IN543in_frame_del	0.000:0.000:0.000:0.000:0.000:0.000	pfam_OA_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO1B3	HGNC	ENSG00000111700				100	0	0	44	8	15.3846
CALCOCO1	0	genome.wustl.edu	37	12	54108990	54108991	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	12	54108990	54108991	AG	-	DEL	CALCOCO1	ENST00000550804	human	ensembl	74_37	-1	known	frame_shift_del	c.1380_1379	p.S460fs	0.989:0.998	pfam_CoCoA	pfam_CoCoA	-	no_errors	CALCOCO1	HGNC	ENSG00000012822				58	0	0	15	8	34.7826
CDH24	0	genome.wustl.edu	37	14	23523498	23523498	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	14	23523498	23523498	C	-	DEL	CDH24	ENST00000267383	human	ensembl	74_37	-1	known	frame_shift_del	c.824	p.G275fs	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH24	HGNC	ENSG00000139880				90	0	0	48	6	11.1111
ALDH6A1	0	genome.wustl.edu	37	14	74537897	74537908	+	Splice_Site	DEL	CCTTCATGCTGT	CCTTCATGCTGT	-			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	CCTTCATGCTGT	CCTTCATGCTGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	14	74537897	74537908	CCTTCATGCTGT	-	DEL	ALDH6A1	ENST00000553458	human	ensembl	74_37	-1	known	splice_site_del	c.730+12_730+1	e7-1	1.000:1.000:0.989:1.000:1.000:1.000:1.000:1.000:0.748:1.000:1.000:1.000	-	-	-	no_errors	ALDH6A1	HGNC	ENSG00000119711				128	0	0	63	5	7.35294
ZNF709	0	genome.wustl.edu	37	19	12576446	12576464	+	Frame_Shift_Del	DEL	GTAAAAGTTTTCTTGTTTG	GTAAAAGTTTTCTTGTTTG	-			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	GTAAAAGTTTTCTTGTTTG	GTAAAAGTTTTCTTGTTTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	19	12576446	12576464	GTAAAAGTTTTCTTGTTTG	-	DEL	ZNF709	ENST00000397732	human	ensembl	74_37	-1	known	frame_shift_del	c.290_272	p.P91fs	0.000:0.000:0.000:0.000:0.003:0.055:0.226:0.855:0.875:0.866:0.862:0.584:0.006:0.002:0.000:0.000:0.000:0.000:0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_Znf_C2H2_jaz,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF709	HGNC	ENSG00000242852				57	0	0	16	7	30.4348
DPY19L3	0	genome.wustl.edu	37	19	32949027	32949029	+	In_Frame_Del	DEL	GAT	GAT	-			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	GAT	GAT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	19	32949027	32949029	GAT	-	DEL	DPY19L3	ENST00000342179	human	ensembl	74_37	+1	known	in_frame_del	c.1111_1113	p.D371in_frame_del	1.000:1.000:0.998	pfam_Dpy-19	pfam_Dpy-19	-	no_errors	DPY19L3	HGNC	ENSG00000178904				44	0	0	15	7	31.8182
CXXC11	0	genome.wustl.edu	37	2	242814523	242814523	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	2	242814523	242814523	C	-	DEL	CXXC11	ENST00000343216	human	ensembl	74_37	+1	known	frame_shift_del	c.816	p.G274fs	0.021	NULL	NULL	-	no_errors	CXXC11	HGNC	ENSG00000188011				39	0	0	25	7	21.875
APC	0	genome.wustl.edu	37	5	112177228	112177228	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	5	112177228	112177228	C	-	DEL	APC	ENST00000257430	human	ensembl	74_37	+1	known	frame_shift_del	c.5937	p.N1979fs	1.000	NULL	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_APC_dom,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982				82	0	0	32	21	39.6226
LAMB4	0	genome.wustl.edu	37	7	107744978	107744991	+	Frame_Shift_Del	DEL	CCTCCAAGGAGCAT	CCTCCAAGGAGCAT	-			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	CCTCCAAGGAGCAT	CCTCCAAGGAGCAT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	7	107744978	107744991	CCTCCAAGGAGCAT	-	DEL	LAMB4	ENST00000205386	human	ensembl	74_37	-1	known	frame_shift_del	c.957_944	p.D315fs	1.000:1.000:1.000:1.000:1.000:1.000:0.992:1.000:0.998:0.003:0.000:0.000:0.000:0.998	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB4	HGNC	ENSG00000091128				134	0	0	85	13	13.2653
AKAP9	0	genome.wustl.edu	37	7	91631763	91631778	+	Frame_Shift_Del	DEL	AAAGCAAAGGAACACT	AAAGCAAAGGAACACT	-			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	AAAGCAAAGGAACACT	AAAGCAAAGGAACACT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	7	91631763	91631778	AAAGCAAAGGAACACT	-	DEL	AKAP9	ENST00000359028	human	ensembl	74_37	+1	known	frame_shift_del	c.2568_2583	p.E856fs	0.980:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.107	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB	-	no_errors	AKAP9	HGNC	ENSG00000127914				80	0	0	69	7	9.21053
GLE1	0	genome.wustl.edu	37	9	131295922	131295937	+	Frame_Shift_Del	DEL	AGAGAAATTTGTGGTG	AGAGAAATTTGTGGTG	-			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	AGAGAAATTTGTGGTG	AGAGAAATTTGTGGTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	9	131295922	131295937	AGAGAAATTTGTGGTG	-	DEL	GLE1	ENST00000309971	human	ensembl	74_37	+1	known	frame_shift_del	c.1443_1455	p.E482fs	1.000:1.000:1.000:1.000:1.000:0.999:1.000:1.000:1.000:1.000:1.000:1.000:1.000	pfam_GLE1	pfam_GLE1	-	no_errors	GLE1	HGNC	ENSG00000119392				134	0	0	114	14	10.9375
JAK2	0	genome.wustl.edu	37	9	5090820	5090839	+	Frame_Shift_Del	DEL	GTTAAAATTGGAGATTTTGG	GTTAAAATTGGAGATTTTGG	-			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	GTTAAAATTGGAGATTTTGG	GTTAAAATTGGAGATTTTGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	9	5090820	5090839	GTTAAAATTGGAGATTTTGG	-	DEL	JAK2	ENST00000381652	human	ensembl	74_37	+1	known	frame_shift_del	c.2968_2987	p.K991fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.996:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain,pfscan_SH2,pfscan_Prot_kinase_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak2,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	JAK2	HGNC	ENSG00000096968				201	0	0	86	17	16.5049
LOC100996870	0	genome.wustl.edu	37	9	66459932	66459933	+	RNA	DEL	AA	AA	-			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	9	66459932	66459933	AA	-	DEL	LOC100996870	ENST00000424345	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.013:0.012	-	-	-	no_errors	RP11-262H14.1	Clone_based_vega_gene	ENSG00000238113				24	0	0	10	4	28.5714
MTMR8	0	genome.wustl.edu	37	X	63568642	63568643	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-4191-01A-02D-1126-08	TCGA-BR-4191-11A-01D-1126-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bcd5de9b-f68d-4829-9694-9cb4252e4600	84c5691b-e55b-4703-abe7-02ddf32d42f0	X	63568642	63568643	AG	-	DEL	MTMR8	ENST00000374852	human	ensembl	74_37	-1	known	frame_shift_del	c.630_629	p.S210fs	0.994:0.996	pfam_Myotubularin-like_Pase_dom	pfam_Myotubularin-like_Pase_dom,smart_Tyr_Pase_cat	-	no_errors	MTMR8	HGNC	ENSG00000102043				42	0	0	13	6	31.5789
