Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
EXTL2	0	genome.wustl.edu	37	1	101339853	101339853	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	101339853	101339853	A	T	SNP	EXTL2	ENST00000370114	human	ensembl	74_37	-1	known	missense	c.638	p.I213N	1.000	pfam_HexNAc_Trfase_a	pfam_HexNAc_Trfase_a	-	no_errors	EXTL2	HGNC	ENSG00000162694				57	0	0	42	7	14.2857
COL11A1	0	genome.wustl.edu	37	1	103345444	103345444	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	103345444	103345444	G	T	SNP	COL11A1	ENST00000358392	human	ensembl	74_37	-1	known	missense	c.5105	p.S1702Y	1.000	pfam_Fib_collagen_C,smart_Fib_collagen_C	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A1	HGNC	ENSG00000060718				90	0	0	55	5	8.33333
CASZ1	0	genome.wustl.edu	37	1	10715762	10715762	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	10715762	10715762	C	T	SNP	CASZ1	ENST00000377022	human	ensembl	74_37	-1	known	missense	c.1609	p.V537I	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CASZ1	HGNC	ENSG00000130940				27	0	0	22	5	18.5185
VAV3	0	genome.wustl.edu	37	1	108507464	108507464	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	108507464	108507464	A	G	SNP	VAV3	ENST00000370056	human	ensembl	74_37	-1	known	missense	c.28	p.W10R	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_DH-domain,pfam_SH3_2,pfam_CAMSAP_CH,pfam_SH3_domain,pfam_SH2,pfam_CH-domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,smart_SH2,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain,prints_SH2,prints_SH3_domain,prints_SM22_calponin	-	no_errors	VAV3	HGNC	ENSG00000134215				22	0	0	26	4	13.3333
FNDC7	0	genome.wustl.edu	37	1	109276020	109276020	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	109276020	109276020	C	T	SNP	FNDC7	ENST00000271311	human	ensembl	74_37	+1	known	missense	c.2009	p.T670M	0.995	superfamily_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC7	HGNC	ENSG00000143107				104	0	0	85	23	21.2963
RBM15	0	genome.wustl.edu	37	1	110884339	110884339	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	110884339	110884339	A	G	SNP	RBM15	ENST00000369784	human	ensembl	74_37	+1	known	missense	c.2312	p.D771G	0.995	NULL	pfam_SPOC_C,pfam_RRM_dom,superfamily_SPOC_like_C_dom,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	RBM15	HGNC	ENSG00000162775				87	0	0	58	12	17.1429
EXOSC10	0	genome.wustl.edu	37	1	11142746	11142746	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	11142746	11142746	G	A	SNP	EXOSC10	ENST00000376936	human	ensembl	74_37	-1	known	missense	c.1279	p.R427C	1.000	pfam_3'-5'_exonuclease_dom,superfamily_RNaseH-like_dom,smart_3'-5'_exonuclease_dom	pfam_3'-5'_exonuclease_dom,pfam_Exosome-assoc_fac_Rrp6_N,pfam_HRDC_dom,superfamily_RNaseH-like_dom,superfamily_HRDC-like,smart_3'-5'_exonuclease_dom,smart_HRDC_dom,pfscan_HRDC_dom	-	no_errors	EXOSC10	HGNC	ENSG00000171824				137	0	0	102	24	19.0476
MAGI3	0	genome.wustl.edu	37	1	114092138	114092138	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	114092138	114092138	C	T	SNP	MAGI3	ENST00000369611	human	ensembl	74_37	+1	known	silent	c.318	p.G106	0.997	superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_WW_dom,pfam_GK/Ca_channel_bsu,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_PDZ,smart_GK/Ca_channel_bsu,smart_WW_dom,pfscan_PDZ,pfscan_WW_dom,pfscan_Guanylate_kin-like	-	no_errors	MAGI3	HGNC	ENSG00000081026				52	0	0	39	6	13.3333
DCLRE1B	0	genome.wustl.edu	37	1	114454678	114454678	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	114454678	114454678	G	T	SNP	DCLRE1B	ENST00000369563	human	ensembl	74_37	+1	known	missense	c.1464	p.K488N	0.000	NULL	pfam_DRMBL	-	no_errors	DCLRE1B	HGNC	ENSG00000118655				113	0	0	97	19	16.3793
AMPD1	0	genome.wustl.edu	37	1	115231320	115231320	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	115231320	115231320	G	A	SNP	AMPD1	ENST00000520113	human	ensembl	74_37	-1	known	missense	c.176	p.A59V	1.000	pirsf_AMP_deaminase	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	-	no_errors	AMPD1	HGNC	ENSG00000116748				146	0	0	145	25	14.7059
IGSF3	0	genome.wustl.edu	37	1	117156651	117156651	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	117156651	117156651	C	T	SNP	IGSF3	ENST00000318837	human	ensembl	74_37	-1	known	missense	c.568	p.E190K	0.998	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	IGSF3	HGNC	ENSG00000143061				75	0	0	42	10	19.2308
VTCN1	0	genome.wustl.edu	37	1	117699263	117699263	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	117699263	117699263	G	A	SNP	VTCN1	ENST00000359008	human	ensembl	74_37	-1	known	silent	c.387	p.G129	1.000	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	VTCN1	HGNC	ENSG00000134258				66	0	0	65	16	19.7531
GDAP2	0	genome.wustl.edu	37	1	118455168	118455168	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	118455168	118455168	C	T	SNP	GDAP2	ENST00000369443	human	ensembl	74_37	-1	known	missense	c.454	p.V152I	0.983	pfam_Macro_dom,smart_Macro_dom,pfscan_Macro_dom	pfam_Macro_dom,superfamily_CRAL-TRIO_dom,smart_Macro_dom,smart_CRAL-TRIO_dom,pfscan_Macro_dom	-	no_errors	GDAP2	HGNC	ENSG00000196505				81	0	0	70	8	10.2564
GDAP2	0	genome.wustl.edu	37	1	118461278	118461278	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	118461278	118461278	G	A	SNP	GDAP2	ENST00000369443	human	ensembl	74_37	-1	known	missense	c.257	p.S86L	1.000	pfam_Macro_dom,smart_Macro_dom,pfscan_Macro_dom	pfam_Macro_dom,superfamily_CRAL-TRIO_dom,smart_Macro_dom,smart_CRAL-TRIO_dom,pfscan_Macro_dom	-	no_errors	GDAP2	HGNC	ENSG00000196505				75	0	0	64	12	15.7895
PLOD1	0	genome.wustl.edu	37	1	12023656	12023656	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	12023656	12023656	G	A	SNP	PLOD1	ENST00000376369	human	ensembl	74_37	+1	known	missense	c.1306	p.E436K	0.995	NULL	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	PLOD1	HGNC	ENSG00000083444				14	0	0	13	2	13.3333
ADAM30	0	genome.wustl.edu	37	1	120438783	120438783	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	120438783	120438783	G	A	SNP	ADAM30	ENST00000369400	human	ensembl	74_37	-1	known	silent	c.177	p.V59	0.000	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM30	HGNC	ENSG00000134249				59	0	0	56	13	18.8406
PRDM2	0	genome.wustl.edu	37	1	14057532	14057532	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	14057532	14057532	C	T	SNP	PRDM2	ENST00000235372	human	ensembl	74_37	+1	known	missense	c.47	p.A16V	0.991	pirsf_RIZ_retinblastoma-bd_prot	pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pirsf_RIZ_retinblastoma-bd_prot,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM2	HGNC	ENSG00000116731				97	0	0	60	18	23.0769
PDE4DIP	0	genome.wustl.edu	37	1	144865839	144865839	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	144865839	144865839	A	G	SNP	PDE4DIP	ENST00000369356	human	ensembl	74_37	-1	known	missense	c.5741	p.L1914P	1.000	NULL	pfam_Spindle_assoc,superfamily_ARM-type_fold	-	no_errors	PDE4DIP	HGNC	ENSG00000178104				381	0	0	318	33	9.40171
NBPF12	0	genome.wustl.edu	37	1	146399620	146399620	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	146399620	146399620	G	A	SNP	NBPF12	ENST00000446760	human	ensembl	74_37	+1	known	missense	c.559	p.A187T	0.000	pfam_NBPF_dom	pfam_NBPF_dom	-	no_errors	NBPF12	HGNC	ENSG00000186275				279	0	0	237	16	6.32411
BCL9	0	genome.wustl.edu	37	1	147096003	147096003	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	147096003	147096003	G	A	SNP	BCL9	ENST00000234739	human	ensembl	74_37	+1	known	missense	c.3524	p.G1175D	1.000	NULL	pfam_BCL9_beta-catenin-bd_dom	-	no_errors	BCL9	HGNC	ENSG00000116128				27	0	0	22	7	24.1379
SV2A	0	genome.wustl.edu	37	1	149884988	149884988	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	149884988	149884988	G	A	SNP	SV2A	ENST00000369146	human	ensembl	74_37	-1	known	silent	c.405	p.G135	0.998	tigrfam_SV2	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2	-	no_errors	SV2A	HGNC	ENSG00000159164				39	0	0	26	7	21.2121
SF3B4	0	genome.wustl.edu	37	1	149898338	149898338	+	Silent	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	149898338	149898338	T	C	SNP	SF3B4	ENST00000271628	human	ensembl	74_37	-1	known	silent	c.636	p.A212	0.984	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SF3B4	HGNC	ENSG00000143368				63	0	0	41	15	26.7857
ADAMTSL4	0	genome.wustl.edu	37	1	150525383	150525383	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	150525383	150525383	G	A	SNP	ADAMTSL4	ENST00000369039	human	ensembl	74_37	+1	known	missense	c.88	p.G30R	0.323	NULL	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt	-	no_errors	ADAMTSL4	HGNC	ENSG00000143382				70	0	0	42	4	8.69565
ANXA9	0	genome.wustl.edu	37	1	150958865	150958865	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	150958865	150958865	C	T	SNP	ANXA9	ENST00000368947	human	ensembl	74_37	+1	known	nonsense	c.526	p.Q176*	0.030	pfam_Annexin_repeat,smart_Annexin_repeat	pfam_Annexin_repeat,smart_Annexin_repeat,prints_Annexin,prints_AnnexinXXXI	-	no_errors	ANXA9	HGNC	ENSG00000143412				49	0	0	32	10	23.8095
THEM4	0	genome.wustl.edu	37	1	151861728	151861728	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	151861728	151861728	G	A	SNP	THEM4	ENST00000368814	human	ensembl	74_37	-1	known	silent	c.408	p.C136	0.191	NULL	pfam_Thioestr_supf	-	no_errors	THEM4	HGNC	ENSG00000159445				63	0	0	45	5	10
TCHH	0	genome.wustl.edu	37	1	152081809	152081809	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	152081809	152081809	T	C	SNP	TCHH	ENST00000368804	human	ensembl	74_37	-1	known	missense	c.3884	p.E1295G	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	TCHH	HGNC	ENSG00000159450				159	0	0	98	21	17.6471
FLG	0	genome.wustl.edu	37	1	152283466	152283466	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	152283466	152283466	C	T	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.3896	p.R1299Q	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				249	0	0	187	40	17.6211
FLG	0	genome.wustl.edu	37	1	152283470	152283470	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	152283470	152283470	A	C	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.3892	p.S1298A	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				252	0	0	187	42	18.3406
KPRP	0	genome.wustl.edu	37	1	152732436	152732436	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	152732436	152732436	G	A	SNP	KPRP	ENST00000368773	human	ensembl	74_37	+1	known	silent	c.372	p.A124	0.000	NULL	NULL	-	no_errors	KPRP	HGNC	ENSG00000203786				302	0	0	240	48	16.6667
S100A14	0	genome.wustl.edu	37	1	153588311	153588311	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	153588311	153588311	G	A	SNP	S100A14	ENST00000344616	human	ensembl	74_37	-1	known	silent	c.24	p.N8	0.134	NULL	pfam_S100_Ca-bd_sub	-	no_errors	S100A14	HGNC	ENSG00000189334				37	0	0	34	5	12.8205
CRTC2	0	genome.wustl.edu	37	1	153924897	153924897	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	153924897	153924897	C	T	SNP	CRTC2	ENST00000368633	human	ensembl	74_37	-1	known	missense	c.728	p.R243Q	1.000	NULL	NULL	-	no_errors	CRTC2	HGNC	ENSG00000160741				103	0	0	81	20	19.802
AQP10	0	genome.wustl.edu	37	1	154296925	154296925	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	154296925	154296925	C	T	SNP	AQP10	ENST00000324978	human	ensembl	74_37	+1	known	missense	c.875	p.A292V	0.050	prints_Aquaporin_10	pfam_MIP,superfamily_Aquaporin-like,prints_MIP,prints_Aquaporin_10,prints_Aquaporin_3,tigrfam_MIP	-	no_errors	AQP10	HGNC	ENSG00000143595				92	0	0	51	11	17.7419
CHRNB2	0	genome.wustl.edu	37	1	154544182	154544182	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	154544182	154544182	C	T	SNP	CHRNB2	ENST00000368476	human	ensembl	74_37	+1	known	missense	c.883	p.P295S	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNB2	HGNC	ENSG00000160716				107	0	0	75	14	15.7303
ZBTB7B	0	genome.wustl.edu	37	1	154988858	154988858	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	154988858	154988858	C	T	SNP	ZBTB7B	ENST00000417934	human	ensembl	74_37	+1	known	silent	c.1419	p.F473	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB7B	HGNC	ENSG00000160685				28	0	0	32	5	13.5135
CLK2	0	genome.wustl.edu	37	1	155239459	155239459	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	155239459	155239459	G	A	SNP	CLK2	ENST00000368361	human	ensembl	74_37	-1	known	silent	c.219	p.Y73	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CLK2	HGNC	ENSG00000176444				139	0	0	111	12	9.7561
RUSC1	0	genome.wustl.edu	37	1	155292496	155292496	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	155292496	155292496	G	A	SNP	RUSC1	ENST00000368352	human	ensembl	74_37	+1	known	missense	c.932	p.R311Q	1.000	NULL	pfam_Run,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Run,smart_SH3_domain,pfscan_Run,pfscan_SH3_domain	-	no_errors	RUSC1	HGNC	ENSG00000160753				83	0	0	48	12	20
GON4L	0	genome.wustl.edu	37	1	155722380	155722380	+	Splice_Site	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	155722380	155722380	T	C	SNP	GON4L	ENST00000271883	human	ensembl	74_37	-1	known	splice_site	c.5843-2	e29-2	0.994	-	-	-	no_errors	GON4L	HGNC	ENSG00000116580				15	0	0	7	4	36.3636
VHLL	0	genome.wustl.edu	37	1	156268818	156268818	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	156268818	156268818	G	A	SNP	VHLL	ENST00000339922	human	ensembl	74_37	-1	known	missense	c.163	p.R55W	0.001	pfam_VHL_tumour_suppress_b/a_dom,superfamily_VHL_tumour_suppress_b/a_dom	pfam_VHL_tumour_suppress_b/a_dom,superfamily_VHL_tumour_suppress_b/a_dom	-	no_errors	VHLL	HGNC	ENSG00000189030				47	0	0	46	11	19.2982
NTRK1	0	genome.wustl.edu	37	1	156844776	156844776	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	156844776	156844776	C	T	SNP	NTRK1	ENST00000524377	human	ensembl	74_37	+1	known	missense	c.1330	p.R444W	1.000	prints_Tyr_kinase_neurotrophic_rcpt_1	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Cys-rich_flank_reg_C,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_neurotrophic_rcpt_1,prints_Tyr_kinase_NGF_rcpt	-	no_errors	NTRK1	HGNC	ENSG00000198400				101	0	0	80	17	17.5258
ARHGEF11	0	genome.wustl.edu	37	1	156915860	156915860	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	156915860	156915860	T	G	SNP	ARHGEF11	ENST00000368194	human	ensembl	74_37	-1	known	missense	c.2789	p.E930A	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_RGS-like_dom,pfam_DH-domain,pfam_PDZ,pfam_RGS_dom,superfamily_DH-domain,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_Regulat_G_prot_signal_superfam,smart_DH-domain,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Regulat_G_prot_signal_superfam,pfscan_DH-domain	-	no_errors	ARHGEF11	HGNC	ENSG00000132694				32	0	0	22	4	15.3846
ARHGEF11	0	genome.wustl.edu	37	1	156925516	156925516	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	156925516	156925516	G	A	SNP	ARHGEF11	ENST00000368194	human	ensembl	74_37	-1	known	missense	c.1747	p.P583S	1.000	NULL	pfam_RGS-like_dom,pfam_DH-domain,pfam_PDZ,pfam_RGS_dom,superfamily_DH-domain,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_Regulat_G_prot_signal_superfam,smart_DH-domain,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Regulat_G_prot_signal_superfam,pfscan_DH-domain	-	no_errors	ARHGEF11	HGNC	ENSG00000132694				211	0	0	169	24	12.4352
ETV3	0	genome.wustl.edu	37	1	157106152	157106152	+	RNA	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	157106152	157106152	C	T	SNP	ETV3	ENST00000460850	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ETV3	HGNC	ENSG00000117036				111	0	0	118	21	15.1079
FCRL5	0	genome.wustl.edu	37	1	157494244	157494244	+	Silent	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	157494244	157494244	T	C	SNP	FCRL5	ENST00000356953	human	ensembl	74_37	-1	known	silent	c.2064	p.P688	0.009	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCRL5	HGNC	ENSG00000143297				80	0	0	52	12	18.75
FCRL3	0	genome.wustl.edu	37	1	157665164	157665164	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	157665164	157665164	C	A	SNP	FCRL3	ENST00000492769	human	ensembl	74_37	-1	known	missense	c.1384	p.G462C	0.407	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCRL3	HGNC	ENSG00000160856				159	0	0	105	22	17.3228
FCRL3	0	genome.wustl.edu	37	1	157666067	157666067	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	157666067	157666067	G	A	SNP	FCRL3	ENST00000492769	human	ensembl	74_37	-1	known	silent	c.895	p.L299	0.044	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCRL3	HGNC	ENSG00000160856				138	0	0	121	10	7.63359
ATP1A2	0	genome.wustl.edu	37	1	160094924	160094924	+	Splice_Site	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	160094924	160094924	A	G	SNP	ATP1A2	ENST00000361216	human	ensembl	74_37	+1	known	splice_site	c.631-2	e7-2	1.000	-	-	-	no_errors	ATP1A2	HGNC	ENSG00000018625				41	0	0	29	6	17.1429
ATP1A4	0	genome.wustl.edu	37	1	160156152	160156152	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	160156152	160156152	C	T	SNP	ATP1A4	ENST00000368081	human	ensembl	74_37	+1	known	missense	c.3056	p.P1019L	0.997	tigrfam_ATPase_P-typ_Na/K_IIC	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP1A4	HGNC	ENSG00000132681				139	0	0	98	20	16.9492
SLAMF6	0	genome.wustl.edu	37	1	160465878	160465878	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	160465878	160465878	G	T	SNP	SLAMF6	ENST00000368057	human	ensembl	74_37	-1	known	missense	c.355	p.L119M	0.000	smart_Ig_sub	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	SLAMF6	HGNC	ENSG00000162739				111	0	0	81	15	15.625
ITLN1	0	genome.wustl.edu	37	1	160850999	160850999	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	160850999	160850999	C	T	SNP	ITLN1	ENST00000326245	human	ensembl	74_37	-1	known	missense	c.509	p.R170H	0.919	superfamily_Fibrinogen_a/b/g_C_dom	superfamily_Fibrinogen_a/b/g_C_dom	-	no_errors	ITLN1	HGNC	ENSG00000179914				94	0	0	80	14	14.8936
NDUFS2	0	genome.wustl.edu	37	1	161183198	161183198	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	161183198	161183198	T	G	SNP	NDUFS2	ENST00000367993	human	ensembl	74_37	+1	known	missense	c.1145	p.F382C	1.000	pfam_NADH_Q_OxRdtase_suD,tigrfam_NDH1_su_D/H	pfam_NADH_Q_OxRdtase_suD,tigrfam_NDH1_su_D/H	-	no_errors	NDUFS2	HGNC	ENSG00000158864				21	0	0	17	3	15
SPEN	0	genome.wustl.edu	37	1	16258453	16258453	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	16258453	16258453	C	T	SNP	SPEN	ENST00000375759	human	ensembl	74_37	+1	known	silent	c.5718	p.S1906	0.982	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC_like_C_dom,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526				105	0	0	70	17	19.5402
EPHA2	0	genome.wustl.edu	37	1	16464386	16464386	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	16464386	16464386	C	T	SNP	EPHA2	ENST00000358432	human	ensembl	74_37	-1	known	missense	c.1274	p.R425H	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA2	HGNC	ENSG00000142627				55	0	0	30	10	25
NBPF1	0	genome.wustl.edu	37	1	16913543	16913543	+	Splice_Site	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	16913543	16913543	A	G	SNP	NBPF1	ENST00000430580	human	ensembl	74_37	-1	novel	splice_site	c.778+2	e5+2	0.043	-	-	-	no_errors	NBPF1	HGNC	ENSG00000219481				387	0	0	387	28	6.74699
FMO3	0	genome.wustl.edu	37	1	171076863	171076863	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	171076863	171076863	C	T	SNP	FMO3	ENST00000367755	human	ensembl	74_37	+1	known	silent	c.369	p.G123	1.000	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase,prints_Flavin_mOase_3,prints_Flavin_mOase_1,prints_Flavin_mOase_2	-	no_errors	FMO3	HGNC	ENSG00000007933				96	0	0	66	24	26.6667
ATP13A2	0	genome.wustl.edu	37	1	17313587	17313587	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	17313587	17313587	T	C	SNP	ATP13A2	ENST00000326735	human	ensembl	74_37	-1	known	missense	c.3037	p.T1013A	0.964	tigrfam_ATPase_P-typ_Cation_typ_V	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_Cation_typ_V,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP13A2	HGNC	ENSG00000159363				31	0	0	23	10	30.303
RC3H1	0	genome.wustl.edu	37	1	173930312	173930312	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	173930312	173930312	C	T	SNP	RC3H1	ENST00000258349	human	ensembl	74_37	-1	known	missense	c.2273	p.R758Q	1.000	NULL	pfam_Znf_CCCH,smart_Znf_RING,smart_Znf_CCCH,pfscan_Znf_RING	-	no_errors	RC3H1	HGNC	ENSG00000135870				106	0	0	64	23	26.4368
GPR52	0	genome.wustl.edu	37	1	174417414	174417414	+	Silent	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	174417414	174417414	T	C	SNP	GPR52	ENST00000367685	human	ensembl	74_37	+1	known	silent	c.165	p.I55	0.998	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR52	HGNC	ENSG00000203737				95	0	0	91	18	16.5138
PADI1	0	genome.wustl.edu	37	1	17566229	17566229	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	17566229	17566229	A	T	SNP	PADI1	ENST00000375471	human	ensembl	74_37	+1	known	missense	c.1583	p.N528I	1.000	pfam_PAD_C,pirsf_Protein-arginine_deiminase_sub	pfam_PAD_C,pfam_Prot_Arg_deaminase_cen_dom,pfam_PAD_N,superfamily_Prot_Arg_deaminase_cen_dom,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	-	no_errors	PADI1	HGNC	ENSG00000142623				31	0	0	46	4	8
PAPPA2	0	genome.wustl.edu	37	1	176671867	176671867	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	176671867	176671867	T	C	SNP	PAPPA2	ENST00000367662	human	ensembl	74_37	+1	known	missense	c.3361	p.S1121P	0.000	tigrfam_Myxo_disulph_rpt	pfam_Notch_dom,pfam_Sushi_SCR_CCP,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA2	HGNC	ENSG00000116183				36	0	0	41	7	14.5833
LHX4	0	genome.wustl.edu	37	1	180235536	180235536	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	180235536	180235536	C	T	SNP	LHX4	ENST00000263726	human	ensembl	74_37	+1	known	silent	c.258	p.G86	1.000	pfscan_Znf_LIM	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LHX4	HGNC	ENSG00000121454				33	0	0	29	6	17.1429
CACNA1E	0	genome.wustl.edu	37	1	181706764	181706764	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	181706764	181706764	G	A	SNP	CACNA1E	ENST00000367573	human	ensembl	74_37	+1	known	missense	c.3526	p.V1176I	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216				81	0	0	63	20	24.0964
CACNA1E	0	genome.wustl.edu	37	1	181731743	181731743	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	181731743	181731743	T	C	SNP	CACNA1E	ENST00000367573	human	ensembl	74_37	+1	known	missense	c.4639	p.F1547L	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216				34	0	0	39	11	22
APOBEC4	0	genome.wustl.edu	37	1	183617241	183617241	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	183617241	183617241	C	T	SNP	APOBEC4	ENST00000308641	human	ensembl	74_37	-1	known	missense	c.676	p.A226T	0.975	NULL	pfam_APOBEC_N	-	no_errors	APOBEC4	HGNC	ENSG00000173627				95	0	0	95	18	15.9292
IVNS1ABP	0	genome.wustl.edu	37	1	185270128	185270128	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	185270128	185270128	T	C	SNP	IVNS1ABP	ENST00000367498	human	ensembl	74_37	-1	known	missense	c.1096	p.M366V	1.000	pfam_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_Kelch_2,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	IVNS1ABP	HGNC	ENSG00000116679				76	0	0	58	12	17.1429
HMCN1	0	genome.wustl.edu	37	1	185931751	185931751	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	185931751	185931751	G	A	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	missense	c.1930	p.A644T	0.002	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				132	0	0	137	21	13.2911
HMCN1	0	genome.wustl.edu	37	1	186092202	186092202	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	186092202	186092202	C	T	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	missense	c.12349	p.R4117C	0.843	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				64	0	0	44	15	25.4237
HMCN1	0	genome.wustl.edu	37	1	186113746	186113746	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	186113746	186113746	G	A	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	missense	c.14177	p.G4726D	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				83	0	0	71	15	17.4419
PRG4	0	genome.wustl.edu	37	1	186276755	186276755	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	186276755	186276755	C	T	SNP	PRG4	ENST00000445192	human	ensembl	74_37	+1	known	missense	c.1904	p.T635I	0.000	NULL	pfam_Somatomedin_B_dom,pfam_Hemopexin-like_repeat,superfamily_Hemopexin-like_dom,smart_Somatomedin_B_dom,smart_Hemopexin-like_repeat,prints_Somatomedin_B_chordata,pfscan_Somatomedin_B_dom	-	no_errors	PRG4	HGNC	ENSG00000116690				40	0	0	23	7	23.3333
TPR	0	genome.wustl.edu	37	1	186328983	186328983	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	186328983	186328983	C	T	SNP	TPR	ENST00000367478	human	ensembl	74_37	-1	known	missense	c.1337	p.R446H	1.000	NULL	pfam_TPR_MLP1_2,superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	TPR	HGNC	ENSG00000047410				62	0	0	60	16	21.0526
BRINP3	0	genome.wustl.edu	37	1	190129847	190129847	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	190129847	190129847	G	A	SNP	BRINP3	ENST00000367462	human	ensembl	74_37	-1	known	missense	c.1135	p.L379F	1.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	BRINP3	HGNC	ENSG00000162670				86	0	0	65	19	22.619
BRINP3	0	genome.wustl.edu	37	1	190129967	190129967	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	190129967	190129967	A	G	SNP	BRINP3	ENST00000367462	human	ensembl	74_37	-1	known	missense	c.1015	p.S339P	1.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	BRINP3	HGNC	ENSG00000162670				113	0	0	96	20	17.2414
CAPZB	0	genome.wustl.edu	37	1	19671710	19671710	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	19671710	19671710	G	A	SNP	CAPZB	ENST00000433834	human	ensembl	74_37	-1	known	missense	c.712	p.H238Y	1.000	pfam_CapZ_beta	pfam_CapZ_beta,prints_CapZ_beta	-	no_errors	CAPZB	HGNC	ENSG00000077549				85	0	0	76	4	5
ASPM	0	genome.wustl.edu	37	1	197098315	197098315	+	Splice_Site	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	197098315	197098315	A	G	SNP	ASPM	ENST00000367409	human	ensembl	74_37	-1	known	splice_site	c.2760+2	e9+2	1.000	-	-	-	no_errors	ASPM	HGNC	ENSG00000066279				80	0	0	60	11	15.493
DENND1B	0	genome.wustl.edu	37	1	197564380	197564380	+	Silent	SNP	A	A	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	197564380	197564380	A	C	SNP	DENND1B	ENST00000367396	human	ensembl	74_37	-1	known	silent	c.1005	p.A335	0.988	pfam_dDENN_dom,smart_dDENN_dom,pfscan_dDENN_dom	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND1B	HGNC	ENSG00000213047				242	0	0	214	37	14.741
TMCO4	0	genome.wustl.edu	37	1	20009604	20009604	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	20009604	20009604	T	C	SNP	TMCO4	ENST00000294543	human	ensembl	74_37	-1	known	missense	c.1834	p.M612V	0.000	NULL	pfam_DUF726,pfam_DUF900_hydrolase	-	no_errors	TMCO4	HGNC	ENSG00000162542				49	0	0	37	12	24.4898
CACNA1S	0	genome.wustl.edu	37	1	201023674	201023674	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	201023674	201023674	T	G	SNP	CACNA1S	ENST00000362061	human	ensembl	74_37	-1	known	missense	c.3625	p.S1209R	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_VDCC_L_a1ssu	-	no_errors	CACNA1S	HGNC	ENSG00000081248				23	0	0	17	4	19.0476
PPP1R12B	0	genome.wustl.edu	37	1	202465946	202465946	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	202465946	202465946	C	T	SNP	PPP1R12B	ENST00000336894	human	ensembl	74_37	+1	known	missense	c.2486	p.T829M	0.001	pirsf_Pase-1_reg_su_12A/B/C_euk	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pirsf_Pase-1_reg_su_12A/B/C_euk,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	PPP1R12B	HGNC	ENSG00000077157				91	0	0	71	18	20.2247
TMEM183A	0	genome.wustl.edu	37	1	202985125	202985125	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	202985125	202985125	C	T	SNP	TMEM183A	ENST00000367242	human	ensembl	74_37	+1	known	nonsense	c.565	p.R189*	1.000	NULL	superfamily_F-box_dom	-	no_errors	TMEM183A	HGNC	ENSG00000163444				105	0	0	93	22	19.1304
FMOD	0	genome.wustl.edu	37	1	203316449	203316449	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	203316449	203316449	T	C	SNP	FMOD	ENST00000354955	human	ensembl	74_37	-1	known	missense	c.950	p.N317S	1.000	pfam_Leu-rich_rpt	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	FMOD	HGNC	ENSG00000122176				111	0	0	92	6	6.12245
PIK3C2B	0	genome.wustl.edu	37	1	204418318	204418318	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	204418318	204418318	G	T	SNP	PIK3C2B	ENST00000367187	human	ensembl	74_37	-1	known	missense	c.2341	p.L781M	1.000	pfam_PI3K_C2_dom,superfamily_C2_dom	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_dom,pfscan_C2_dom,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2B	HGNC	ENSG00000133056				19	0	0	10	5	33.3333
PLA2G2D	0	genome.wustl.edu	37	1	20442089	20442089	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	20442089	20442089	T	C	SNP	PLA2G2D	ENST00000375105	human	ensembl	74_37	-1	known	missense	c.203	p.D68G	1.000	pfam_PLipase_A2_dom,superfamily_PLipase_A2_dom,smart_PLipase_A2_dom,prints_PLipase_A2	pfam_PLipase_A2_dom,superfamily_PLipase_A2_dom,smart_PLipase_A2_dom,prints_PLipase_A2	-	no_errors	PLA2G2D	HGNC	ENSG00000117215				62	0	0	56	8	12.5
MDM4	0	genome.wustl.edu	37	1	204501904	204501904	+	Silent	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	204501904	204501904	T	C	SNP	MDM4	ENST00000367180	human	ensembl	74_37	+1	known	silent	c.351	p.G117	0.018	superfamily_SWIB_MDM2_domain,pirsf_p53_neg-reg_MDM_2/4	pfam_SWIB_MDM2_domain,superfamily_SWIB_MDM2_domain,pirsf_p53_neg-reg_MDM_2/4	-	no_errors	MDM4	HGNC	ENSG00000198625				61	0	0	56	13	18.8406
ELK4	0	genome.wustl.edu	37	1	205589189	205589189	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	205589189	205589189	G	A	SNP	ELK4	ENST00000357992	human	ensembl	74_37	-1	known	missense	c.985	p.P329S	1.000	NULL	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ELK4	HGNC	ENSG00000158711				96	0	0	55	8	12.6984
SLC41A1	0	genome.wustl.edu	37	1	205766095	205766095	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	205766095	205766095	G	A	SNP	SLC41A1	ENST00000367137	human	ensembl	74_37	-1	known	silent	c.1029	p.D343	1.000	NULL	pfam_SLC41_membr_dom	-	no_errors	SLC41A1	HGNC	ENSG00000133065				27	0	0	24	4	14.2857
CD34	0	genome.wustl.edu	37	1	208061172	208061172	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	208061172	208061172	G	A	SNP	CD34	ENST00000310833	human	ensembl	74_37	-1	known	nonsense	c.1069	p.R357*	1.000	pfam_CD34/Podocalyxin,prints_CD34	pfam_CD34/Podocalyxin,prints_CD34	-	no_errors	CD34	HGNC	ENSG00000174059				48	0	0	45	5	10
SERTAD4	0	genome.wustl.edu	37	1	210411408	210411408	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	210411408	210411408	G	A	SNP	SERTAD4	ENST00000367012	human	ensembl	74_37	+1	known	missense	c.103	p.G35R	0.907	NULL	pfam_SERTA,pfscan_SERTA	-	no_errors	SERTAD4	HGNC	ENSG00000082497				97	0	0	84	22	20.7547
TRAF5	0	genome.wustl.edu	37	1	211546014	211546014	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	211546014	211546014	C	T	SNP	TRAF5	ENST00000261464	human	ensembl	74_37	+1	known	silent	c.1644	p.A548	0.620	pfam_MATH,superfamily_TRAF-like,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH	pfam_MATH,superfamily_TRAF-like,smart_Znf_RING,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	TRAF5	HGNC	ENSG00000082512				67	0	0	56	13	18.8406
NEK2	0	genome.wustl.edu	37	1	211843642	211843642	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	211843642	211843642	G	A	SNP	NEK2	ENST00000540251	human	ensembl	74_37	-1	known	missense	c.617	p.T206M	0.979	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	NEK2	HGNC	ENSG00000117650				160	1	0.621118	116	22	15.942
TMEM206	0	genome.wustl.edu	37	1	212560431	212560431	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	212560431	212560431	C	T	SNP	TMEM206	ENST00000535273	human	ensembl	74_37	-1	known	missense	c.328	p.E110K	0.984	NULL	NULL	-	no_errors	TMEM206	HGNC	ENSG00000065600				47	0	0	42	16	27.5862
PTPN14	0	genome.wustl.edu	37	1	214705976	214705976	+	RNA	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	214705976	214705976	G	A	SNP	PTPN14	ENST00000491277	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	PTPN14	HGNC	ENSG00000152104				145	1	0.684932	101	15	12.931
CENPF	0	genome.wustl.edu	37	1	214792011	214792011	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	214792011	214792011	C	T	SNP	CENPF	ENST00000366955	human	ensembl	74_37	+1	known	missense	c.455	p.P152L	0.996	pfam_Centromere_CenpF_N	pfam_Centromere_CenpF_N,pfam_Centromere_CenpF_leu-rich_rpt,pfam_CenpF/LEK1_Rb-prot-bd	-	no_errors	CENPF	HGNC	ENSG00000117724				76	0	0	46	13	22.0339
CENPF	0	genome.wustl.edu	37	1	214819293	214819293	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	214819293	214819293	G	A	SNP	CENPF	ENST00000366955	human	ensembl	74_37	+1	known	missense	c.6380	p.R2127H	0.995	NULL	pfam_Centromere_CenpF_N,pfam_Centromere_CenpF_leu-rich_rpt,pfam_CenpF/LEK1_Rb-prot-bd	-	no_errors	CENPF	HGNC	ENSG00000117724				108	1	0.917431	90	20	18.1818
NBPF3	0	genome.wustl.edu	37	1	21795231	21795231	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	21795231	21795231	G	A	SNP	NBPF3	ENST00000318249	human	ensembl	74_37	+1	known	missense	c.184	p.G62S	0.000	NULL	pfam_NBPF_dom	-	no_errors	NBPF3	HGNC	ENSG00000142794				171	0	0	131	27	17.0886
SPATA17	0	genome.wustl.edu	37	1	217955552	217955552	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	217955552	217955552	C	T	SNP	SPATA17	ENST00000366933	human	ensembl	74_37	+1	known	missense	c.760	p.R254C	1.000	NULL	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SPATA17	HGNC	ENSG00000162814				79	0	0	56	8	12.5
RAB3GAP2	0	genome.wustl.edu	37	1	220324711	220324711	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	220324711	220324711	G	A	SNP	RAB3GAP2	ENST00000358951	human	ensembl	74_37	-1	known	missense	c.4064	p.A1355V	0.491	NULL	superfamily_WD40_repeat_dom	-	no_errors	RAB3GAP2	HGNC	ENSG00000118873				123	0	0	103	25	19.5312
HSPG2	0	genome.wustl.edu	37	1	22156025	22156025	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	22156025	22156025	T	C	SNP	HSPG2	ENST00000374695	human	ensembl	74_37	-1	known	missense	c.11843	p.H3948R	1.000	superfamily_ConA-like_lec_gl_sf,pfscan_Laminin_G	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_SEA_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA_dom,pfscan_Ig-like_dom,prints_LDrepeatLR_classA_rpt	-	no_errors	HSPG2	HGNC	ENSG00000142798				18	0	0	18	2	10
DISP1	0	genome.wustl.edu	37	1	223177546	223177546	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	223177546	223177546	C	T	SNP	DISP1	ENST00000284476	human	ensembl	74_37	+1	novel	missense	c.2807	p.A936V	1.000	NULL	pfam_Patched,pfam_MMPL_dom,pfscan_SSD	-	no_errors	DISP1	HGNC	ENSG00000154309				57	0	0	39	6	13.3333
CAPN2	0	genome.wustl.edu	37	1	223943271	223943271	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	223943271	223943271	G	A	SNP	CAPN2	ENST00000295006	human	ensembl	74_37	+1	known	missense	c.1225	p.V409M	1.000	pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Calpain_III	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,pfscan_EF_hand_dom,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN2	HGNC	ENSG00000162909				31	0	0	20	4	16.6667
ZBTB40	0	genome.wustl.edu	37	1	22839533	22839533	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	22839533	22839533	G	A	SNP	ZBTB40	ENST00000375647	human	ensembl	74_37	+1	known	missense	c.2578	p.G860R	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB40	HGNC	ENSG00000184677				40	0	0	41	13	24.0741
OBSCN	0	genome.wustl.edu	37	1	228509533	228509533	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	228509533	228509533	C	T	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	silent	c.14991	p.S4997	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				60	0	0	40	4	9.09091
COG2	0	genome.wustl.edu	37	1	230798937	230798937	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	230798937	230798937	G	A	SNP	COG2	ENST00000366669	human	ensembl	74_37	+1	known	missense	c.351	p.M117I	1.000	pfam_COG_su2_N	pfam_COG_complex_COG2_C,pfam_COG_su2_N	-	no_errors	COG2	HGNC	ENSG00000135775				63	0	0	61	16	20.7792
SIPA1L2	0	genome.wustl.edu	37	1	232626723	232626723	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	232626723	232626723	T	C	SNP	SIPA1L2	ENST00000262861	human	ensembl	74_37	-1	known	missense	c.1703	p.E568G	1.000	NULL	pfam_DUF3401,pfam_Rap_GAP_dom,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L2	HGNC	ENSG00000116991				83	0	0	73	14	16.092
PCNXL2	0	genome.wustl.edu	37	1	233134062	233134062	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	233134062	233134062	G	A	SNP	PCNXL2	ENST00000258229	human	ensembl	74_37	-1	known	missense	c.5726	p.A1909V	0.002	NULL	pfam_Pecanex,superfamily_Trypsin-like_Pept_dom	-	no_errors	PCNXL2	HGNC	ENSG00000135749				29	0	0	24	4	14.2857
KDM1A	0	genome.wustl.edu	37	1	23409681	23409681	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	23409681	23409681	C	T	SNP	KDM1A	ENST00000542151	human	ensembl	74_37	+1	known	nonsense	c.2455	p.R819*	1.000	pfam_Amino_oxidase,pirsf_Hist_Lys-spec_deMease	pfam_Amino_oxidase,pfam_SWIRM,pfam_FAD-dep_OxRdtase,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_FAD_bind_dom,superfamily_Homeodomain-like,pirsf_Hist_Lys-spec_deMease,pfscan_SWIRM	-	no_errors	KDM1A	HGNC	ENSG00000004487				59	0	0	50	10	16.6667
ACTN2	0	genome.wustl.edu	37	1	236902754	236902754	+	Silent	SNP	C	C	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	236902754	236902754	C	A	SNP	ACTN2	ENST00000366578	human	ensembl	74_37	+1	known	silent	c.1029	p.I343	1.000	pfam_Spectrin_repeat	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	ACTN2	HGNC	ENSG00000077522				92	0	0	66	13	16.4557
ACTN2	0	genome.wustl.edu	37	1	236920825	236920825	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	236920825	236920825	G	A	SNP	ACTN2	ENST00000366578	human	ensembl	74_37	+1	known	missense	c.2194	p.A732T	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	ACTN2	HGNC	ENSG00000077522				74	0	0	81	10	10.989
CHRM3	0	genome.wustl.edu	37	1	240072247	240072247	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	240072247	240072247	C	T	SNP	CHRM3	ENST00000255380	human	ensembl	74_37	+1	known	missense	c.1496	p.A499V	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Musac_Ach_M3_rcpt,prints_Musac_Ach_rcpt,prints_GPCR_Rhodpsn	-	no_errors	CHRM3	HGNC	ENSG00000133019				133	0	0	87	24	21.6216
IL22RA1	0	genome.wustl.edu	37	1	24448013	24448013	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	24448013	24448013	T	C	SNP	IL22RA1	ENST00000270800	human	ensembl	74_37	-1	novel	missense	c.1007	p.Q336R	0.018	NULL	pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL22RA1	HGNC	ENSG00000142677				51	0	0	33	11	25
SCCPDH	0	genome.wustl.edu	37	1	246890298	246890298	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	246890298	246890298	G	A	SNP	SCCPDH	ENST00000366510	human	ensembl	74_37	+1	known	missense	c.295	p.V99I	1.000	pfam_Saccharopine_DH/HSpermid_syn	pfam_Saccharopine_DH/HSpermid_syn	-	no_errors	SCCPDH	HGNC	ENSG00000143653				62	0	0	32	13	28.8889
AHCTF1	0	genome.wustl.edu	37	1	247063740	247063740	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	247063740	247063740	A	T	SNP	AHCTF1	ENST00000326225	human	ensembl	74_37	-1	known	missense	c.1176	p.F392L	1.000	NULL	superfamily_Quinonprotein_ADH-like_supfam	-	no_errors	AHCTF1	HGNC	ENSG00000153207				71	0	0	45	17	27.4194
OR6F1	0	genome.wustl.edu	37	1	247875374	247875374	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	247875374	247875374	G	A	SNP	OR6F1	ENST00000302084	human	ensembl	74_37	-1	known	silent	c.684	p.I228	0.004	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6F1	HGNC	ENSG00000169214				132	0	0	99	9	8.33333
OR2W3	0	genome.wustl.edu	37	1	248059482	248059482	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	248059482	248059482	C	T	SNP	OR2W3	ENST00000360358	human	ensembl	74_37	+1	known	silent	c.594	p.T198	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2W3	HGNC	ENSG00000238243				82	0	0	74	19	20.4301
SRRM1	0	genome.wustl.edu	37	1	24993349	24993349	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	24993349	24993349	C	T	SNP	SRRM1	ENST00000447431	human	ensembl	74_37	+1	known	nonsense	c.1708	p.R570*	1.000	NULL	pfam_PWI_dom,superfamily_PWI_dom,smart_PWI_dom	-	no_errors	SRRM1	HGNC	ENSG00000133226				19	0	0	20	3	13.0435
CD52	0	genome.wustl.edu	37	1	26646688	26646688	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	26646688	26646688	C	T	SNP	CD52	ENST00000374213	human	ensembl	74_37	+1	known	silent	c.81	p.N27	0.000	NULL	NULL	-	no_errors	CD52	HGNC	ENSG00000169442				54	0	0	50	15	23.0769
AIM1L	0	genome.wustl.edu	37	1	26669262	26669262	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	26669262	26669262	G	T	SNP	AIM1L	ENST00000527815	human	ensembl	74_37	-1	known	missense	c.565	p.L189I	0.998	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,pfam_Ricin_B_lectin,superfamily_G_crystallin-rel,superfamily_Ricin_B_lectin,smart_Beta/gamma_crystallin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	AIM1L	HGNC	ENSG00000176092				172	0	0	119	29	19.5946
RPS6KA1	0	genome.wustl.edu	37	1	26883502	26883502	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	26883502	26883502	G	A	SNP	RPS6KA1	ENST00000531382	human	ensembl	74_37	+1	known	missense	c.1022	p.R341H	0.995	superfamily_Kinase-like_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RPS6KA1	HGNC	ENSG00000117676				79	0	0	53	6	10.1695
ARID1A	0	genome.wustl.edu	37	1	27094434	27094434	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	27094434	27094434	C	T	SNP	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	missense	c.3142	p.P1048S	1.000	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713				86	0	0	80	19	19.1919
SLC9A1	0	genome.wustl.edu	37	1	27436202	27436202	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	27436202	27436202	C	T	SNP	SLC9A1	ENST00000263980	human	ensembl	74_37	-1	known	missense	c.880	p.G294S	1.000	pfam_Cation/H_exchanger,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_Na/H_exchanger_1,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A1	HGNC	ENSG00000090020				134	0	0	81	18	18.1818
HDAC1	0	genome.wustl.edu	37	1	32794717	32794717	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	32794717	32794717	C	T	SNP	HDAC1	ENST00000373548	human	ensembl	74_37	+1	known	nonsense	c.685	p.R229*	1.000	pfam_His_deacetylse_dom,pirsf_His_deacetylse_1	pfam_His_deacetylse_dom,pirsf_His_deacetylse_1,prints_His_deacetylse_1,prints_His_deacetylse	-	no_errors	HDAC1	HGNC	ENSG00000116478				127	0	0	104	10	8.77193
S100PBP	0	genome.wustl.edu	37	1	33318764	33318764	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	33318764	33318764	C	T	SNP	S100PBP	ENST00000373475	human	ensembl	74_37	+1	known	missense	c.1109	p.T370M	0.094	NULL	NULL	-	no_errors	S100PBP	HGNC	ENSG00000116497				80	0	0	50	8	13.7931
CSMD2	0	genome.wustl.edu	37	1	34102053	34102053	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	34102053	34102053	C	T	SNP	CSMD2	ENST00000373381	human	ensembl	74_37	-1	known	missense	c.4876	p.G1626R	0.115	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904				32	0	0	28	7	20
C1orf94	0	genome.wustl.edu	37	1	34666585	34666585	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	34666585	34666585	C	T	SNP	C1orf94	ENST00000488417	human	ensembl	74_37	+1	known	nonsense	c.1222	p.Q408*	0.997	NULL	NULL	-	no_errors	C1orf94	HGNC	ENSG00000142698				14	0	0	14	5	26.3158
DLGAP3	0	genome.wustl.edu	37	1	35334284	35334284	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	35334284	35334284	G	A	SNP	DLGAP3	ENST00000235180	human	ensembl	74_37	-1	known	missense	c.2407	p.R803W	1.000	pfam_GKAP	pfam_GKAP	-	no_errors	DLGAP3	HGNC	ENSG00000116544				36	0	0	34	7	17.0732
NCDN	0	genome.wustl.edu	37	1	36029369	36029369	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	36029369	36029369	C	T	SNP	NCDN	ENST00000356090	human	ensembl	74_37	+1	known	missense	c.1612	p.R538C	1.000	NULL	NULL	-	no_errors	NCDN	HGNC	ENSG00000020129				100	0	0	77	27	25.9615
C1orf216	0	genome.wustl.edu	37	1	36181448	36181448	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	36181448	36181448	G	A	SNP	C1orf216	ENST00000270815	human	ensembl	74_37	-1	known	missense	c.475	p.R159C	1.000	NULL	NULL	-	no_errors	C1orf216	HGNC	ENSG00000142686				117	0	0	90	14	13.4615
AGO1	0	genome.wustl.edu	37	1	36380998	36380998	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	36380998	36380998	G	A	SNP	AGO1	ENST00000373204	human	ensembl	74_37	+1	known	missense	c.1883	p.R628Q	1.000	pfam_Piwi,superfamily_RNaseH-like_dom,smart_Piwi,pfscan_Piwi	pfam_Piwi,pfam_PAZ_dom,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	AGO1	HGNC	ENSG00000092847				86	0	0	78	5	6.0241
ADPRHL2	0	genome.wustl.edu	37	1	36558054	36558054	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	36558054	36558054	C	T	SNP	ADPRHL2	ENST00000373178	human	ensembl	74_37	+1	known	missense	c.733	p.R245C	0.943	pfam_Ribosyl_crysJ1,superfamily_Ribosyl_crysJ1	pfam_Ribosyl_crysJ1,superfamily_Ribosyl_crysJ1	-	no_errors	ADPRHL2	HGNC	ENSG00000116863				57	0	0	36	9	20
MAP7D1	0	genome.wustl.edu	37	1	36638172	36638172	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	36638172	36638172	G	A	SNP	MAP7D1	ENST00000373151	human	ensembl	74_37	+1	known	missense	c.568	p.E190K	0.999	NULL	pfam_MAP7	-	no_errors	MAP7D1	HGNC	ENSG00000116871				17	0	0	13	2	13.3333
LRRC47	0	genome.wustl.edu	37	1	3697831	3697831	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	3697831	3697831	C	T	SNP	LRRC47	ENST00000378251	human	ensembl	74_37	-1	known	missense	c.1573	p.D525N	0.172	NULL	pfam_Leu-rich_rpt,pfam_B3/B4_tRNA-bd,smart_Leu-rich_rpt_typical-subtyp,smart_B3/B4_tRNA-bd	-	no_errors	LRRC47	HGNC	ENSG00000130764				69	0	0	52	9	14.7541
HPCAL4	0	genome.wustl.edu	37	1	40149806	40149806	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	40149806	40149806	C	T	SNP	HPCAL4	ENST00000372844	human	ensembl	74_37	-1	known	missense	c.181	p.A61T	1.000	pfscan_EF_hand_dom	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	-	no_errors	HPCAL4	HGNC	ENSG00000116983				31	0	0	24	7	22.5806
SCMH1	0	genome.wustl.edu	37	1	41503057	41503057	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	41503057	41503057	G	A	SNP	SCMH1	ENST00000326197	human	ensembl	74_37	-1	known	missense	c.1625	p.A542V	0.884	NULL	pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt,pfscan_SAM	-	no_errors	SCMH1	HGNC	ENSG00000010803				83	0	0	45	19	29.6875
ZMYND12	0	genome.wustl.edu	37	1	42901019	42901019	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	42901019	42901019	T	C	SNP	ZMYND12	ENST00000372565	human	ensembl	74_37	-1	known	missense	c.755	p.Y252C	0.915	NULL	pfam_Znf_MYND,pfscan_Znf_MYND	-	no_errors	ZMYND12	HGNC	ENSG00000066185				147	0	0	137	30	17.9641
TMEM125	0	genome.wustl.edu	37	1	43738712	43738712	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	43738712	43738712	C	T	SNP	TMEM125	ENST00000432792	human	ensembl	74_37	+1	known	missense	c.319	p.R107C	1.000	NULL	NULL	-	no_errors	TMEM125	HGNC	ENSG00000179178				24	0	0	18	3	14.2857
KDM4A	0	genome.wustl.edu	37	1	44137442	44137442	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	44137442	44137442	G	A	SNP	KDM4A	ENST00000372396	human	ensembl	74_37	+1	known	missense	c.1630	p.V544M	1.000	NULL	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4A	HGNC	ENSG00000066135				113	0	0	70	13	15.6627
PLK3	0	genome.wustl.edu	37	1	45270162	45270162	+	Silent	SNP	G	G	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	45270162	45270162	G	T	SNP	PLK3	ENST00000372201	human	ensembl	74_37	+1	known	silent	c.1494	p.S498	0.040	pfam_POLO_box_duplicated_dom,pfscan_POLO_box_duplicated_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_POLO_box_duplicated_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_dom	-	no_errors	PLK3	HGNC	ENSG00000173846				61	0	0	50	13	20.6349
MUTYH	0	genome.wustl.edu	37	1	45799087	45799087	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	45799087	45799087	G	A	SNP	MUTYH	ENST00000450313	human	ensembl	74_37	-1	known	missense	c.346	p.R116W	0.000	superfamily_DNA_glycosylase	pfam_HhH-GPD_domain,superfamily_DNA_glycosylase,superfamily_NUDIX_hydrolase_dom-like,smart_HhH-GPD_domain,smart_Endouclease3_FeS-loop_motif	-	no_errors	MUTYH	HGNC	ENSG00000132781				52	0	0	43	14	24.5614
RAD54L	0	genome.wustl.edu	37	1	46736382	46736382	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	46736382	46736382	G	A	SNP	RAD54L	ENST00000371975	human	ensembl	74_37	+1	known	missense	c.1094	p.R365Q	1.000	pfam_SNF2_N,superfamily_P-loop_NTPase	pfam_SNF2_N,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,pfam_Rad54_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	RAD54L	HGNC	ENSG00000085999				74	0	0	62	13	17.3333
RNF11	0	genome.wustl.edu	37	1	51736936	51736936	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	51736936	51736936	G	A	SNP	RNF11	ENST00000242719	human	ensembl	74_37	+1	known	missense	c.407	p.C136Y	1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF11	HGNC	ENSG00000123091				75	0	0	68	11	13.9241
MRPL37	0	genome.wustl.edu	37	1	54666207	54666207	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	54666207	54666207	G	A	SNP	MRPL37	ENST00000336230	human	ensembl	74_37	+1	known	missense	c.200	p.R67H	0.809	NULL	pfam_Ribosomal_L37/S30	-	no_errors	MRPL37	HGNC	ENSG00000116221				76	0	0	43	14	24.5614
DAB1	0	genome.wustl.edu	37	1	57610998	57610998	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	57610998	57610998	C	T	SNP	DAB1	ENST00000371231	human	ensembl	74_37	-1	known	missense	c.172	p.D58N	1.000	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	-	no_errors	DAB1	HGNC	ENSG00000173406				80	0	0	60	7	10.4478
C1orf87	0	genome.wustl.edu	37	1	60499273	60499273	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	60499273	60499273	T	C	SNP	C1orf87	ENST00000371201	human	ensembl	74_37	-1	known	missense	c.904	p.R302G	0.000	NULL	NULL	-	no_errors	C1orf87	HGNC	ENSG00000162598				105	0	0	69	19	21.5909
INADL	0	genome.wustl.edu	37	1	62594566	62594566	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	62594566	62594566	C	T	SNP	INADL	ENST00000371158	human	ensembl	74_37	+1	known	silent	c.5220	p.H1740	0.947	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_L27,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	INADL	HGNC	ENSG00000132849				99	0	0	86	11	11.3402
JAK1	0	genome.wustl.edu	37	1	65323363	65323363	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	65323363	65323363	G	A	SNP	JAK1	ENST00000342505	human	ensembl	74_37	-1	known	silent	c.1434	p.T478	0.054	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,smart_SH2,prints_Tyr_kinase_non-rcpt_Jak1,pfscan_SH2	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak1,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_SH2,pfscan_Prot_kinase_dom	-	no_errors	JAK1	HGNC	ENSG00000162434				76	0	0	48	12	20
SYDE2	0	genome.wustl.edu	37	1	85656333	85656333	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	85656333	85656333	G	A	SNP	SYDE2	ENST00000341460	human	ensembl	74_37	-1	known	missense	c.848	p.T283I	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	SYDE2	HGNC	ENSG00000097096				158	0	0	140	31	18.1287
CLCA2	0	genome.wustl.edu	37	1	86905964	86905964	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	86905964	86905964	G	T	SNP	CLCA2	ENST00000370565	human	ensembl	74_37	+1	known	missense	c.1337	p.G446V	0.996	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A,tigrfam_CaCC_prot	pfam_Cl_channel_Ca,pfam_DUF1973,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A,tigrfam_CaCC_prot	-	no_errors	CLCA2	HGNC	ENSG00000137975				96	0	0	70	15	17.6471
GBP1	0	genome.wustl.edu	37	1	89520420	89520420	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	89520420	89520420	T	C	SNP	GBP1	ENST00000370473	human	ensembl	74_37	-1	known	missense	c.1610	p.N537S	0.000	pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	pfam_Guanylate-bd_C,pfam_Guanylate-bd_N,superfamily_Guanylate-bd_C,superfamily_P-loop_NTPase	-	no_errors	GBP1	HGNC	ENSG00000117228				326	0	0	301	38	11.2094
GBP1	0	genome.wustl.edu	37	1	89521715	89521715	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	89521715	89521715	G	A	SNP	GBP1	ENST00000370473	human	ensembl	74_37	-1	known	missense	c.1352	p.P451L	0.790	pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	pfam_Guanylate-bd_C,pfam_Guanylate-bd_N,superfamily_Guanylate-bd_C,superfamily_P-loop_NTPase	-	no_errors	GBP1	HGNC	ENSG00000117228				187	0	0	204	42	17.0732
HFM1	0	genome.wustl.edu	37	1	91851380	91851380	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	91851380	91851380	A	G	SNP	HFM1	ENST00000370425	human	ensembl	74_37	-1	known	missense	c.506	p.I169T	0.951	NULL	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	HFM1	HGNC	ENSG00000162669				44	0	0	43	8	15.6863
H6PD	0	genome.wustl.edu	37	1	9307041	9307041	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	9307041	9307041	T	C	SNP	H6PD	ENST00000377403	human	ensembl	74_37	+1	known	missense	c.644	p.L215P	1.000	prints_G6P_DH	pfam_G6P_DH_C,pfam_G6P_DH_NAD-bd,prints_G6P_DH,tigrfam_6-phosphogluconolactonase_DevB	-	no_errors	H6PD	HGNC	ENSG00000049239				46	0	0	50	14	21.875
FNBP1L	0	genome.wustl.edu	37	1	93987691	93987691	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	93987691	93987691	C	T	SNP	FNBP1L	ENST00000271234	human	ensembl	74_37	+1	known	missense	c.193	p.R65W	1.000	pfam_FCH_dom,smart_FCH_dom,pfscan_FCH_dom	pfam_FCH_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_HR1_rho-bd,smart_FCH_dom,smart_SH3_domain,pfscan_FCH_dom,pfscan_SH3_domain	-	no_errors	FNBP1L	HGNC	ENSG00000137942				14	0	0	9	6	40
ARHGAP29	0	genome.wustl.edu	37	1	94639435	94639435	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	94639435	94639435	T	C	SNP	ARHGAP29	ENST00000260526	human	ensembl	74_37	-1	known	missense	c.3776	p.Q1259R	1.000	NULL	pfam_RhoGAP_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Rho_GTPase_activation_prot,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	ARHGAP29	HGNC	ENSG00000137962				174	0	0	140	34	19.5402
ABCD3	0	genome.wustl.edu	37	1	94955520	94955520	+	Silent	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	94955520	94955520	T	C	SNP	ABCD3	ENST00000454898	human	ensembl	74_37	+1	known	silent	c.1383	p.D461	1.000	superfamily_P-loop_NTPase,tigrfam_FA_transporter	pfam_ABC_Peroxi_TM,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,tigrfam_FA_transporter	-	no_errors	ABCD3	HGNC	ENSG00000117528				93	0	0	88	20	18.5185
PIK3CD	0	genome.wustl.edu	37	1	9778917	9778917	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	9778917	9778917	G	A	SNP	PIK3CD	ENST00000536656	human	ensembl	74_37	+1	known	missense	c.1081	p.A361T	1.000	pfam_PI3K_C2_dom,superfamily_C2_dom,smart_PI3K_C2_dom	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,pfam_PI3K_Ras-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CD	HGNC	ENSG00000171608				52	0	0	39	8	17.0213
SFXN3	0	genome.wustl.edu	37	10	102799483	102799483	+	RNA	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	102799483	102799483	T	C	SNP	SFXN3	ENST00000466982	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.040	-	-	-	no_errors	SFXN3	HGNC	ENSG00000107819				18	0	0	16	2	11.1111
TLX1	0	genome.wustl.edu	37	10	102896641	102896641	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	102896641	102896641	G	A	SNP	TLX1	ENST00000370196	human	ensembl	74_37	+1	known	missense	c.964	p.V322I	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	TLX1	HGNC	ENSG00000107807				57	0	0	41	10	19.6078
MGEA5	0	genome.wustl.edu	37	10	103563735	103563735	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	103563735	103563735	C	T	SNP	MGEA5	ENST00000361464	human	ensembl	74_37	-1	known	missense	c.793	p.E265K	1.000	pfam_Beta-N-acetylglucosaminidase,superfamily_Glycoside_hydrolase_SF	pfam_Beta-N-acetylglucosaminidase,superfamily_Glycoside_hydrolase_SF,superfamily_Acyl_CoA_acyltransferase	-	no_errors	MGEA5	HGNC	ENSG00000198408				107	0	0	90	15	14.2857
NT5C2	0	genome.wustl.edu	37	10	104850727	104850727	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	104850727	104850727	C	T	SNP	NT5C2	ENST00000343289	human	ensembl	74_37	-1	known	missense	c.1238	p.R413H	1.000	pfam_HAD-SF_hydro_IG_5-nucl,superfamily_HAD-like_dom,pirsf_Pur_nucleotidase	pfam_HAD-SF_hydro_IG_5-nucl,superfamily_HAD-like_dom,pirsf_Pur_nucleotidase,tigrfam_HAD-SF_hydro_IG_5-nucl	-	no_errors	NT5C2	HGNC	ENSG00000076685				71	0	0	74	12	13.9535
INA	0	genome.wustl.edu	37	10	105046873	105046873	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	105046873	105046873	C	T	SNP	INA	ENST00000369849	human	ensembl	74_37	+1	known	missense	c.1147	p.L383F	1.000	pfam_IF	pfam_IF,pfam_Intermed_filament_DNA-bd,superfamily_Prefoldin	-	no_errors	INA	HGNC	ENSG00000148798				49	0	0	35	7	16.6667
PDCD11	0	genome.wustl.edu	37	10	105194617	105194617	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	105194617	105194617	G	A	SNP	PDCD11	ENST00000369797	human	ensembl	74_37	+1	known	missense	c.3730	p.E1244K	0.001	superfamily_NA-bd_OB-fold,smart_RNA-binding_domain_S1,pfscan_Rbsml_prot_S1_RNA-bd_dom	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_Suf,superfamily_NA-bd_OB-fold,smart_RNA-binding_domain_S1,smart_HAT,pfscan_TPR-contain_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom,prints_Ribosomal_S1	-	no_errors	PDCD11	HGNC	ENSG00000148843				41	0	0	24	4	14.2857
SORCS1	0	genome.wustl.edu	37	10	108431115	108431115	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	108431115	108431115	C	T	SNP	SORCS1	ENST00000344440	human	ensembl	74_37	-1	known	missense	c.2069	p.C690Y	1.000	smart_VPS10	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS1	HGNC	ENSG00000108018				155	0	0	114	20	14.9254
SORCS1	0	genome.wustl.edu	37	10	108439027	108439027	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	108439027	108439027	T	G	SNP	SORCS1	ENST00000344440	human	ensembl	74_37	-1	known	missense	c.1727	p.N576T	1.000	smart_VPS10	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS1	HGNC	ENSG00000108018				84	0	0	64	10	13.5135
HABP2	0	genome.wustl.edu	37	10	115338458	115338458	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	115338458	115338458	C	T	SNP	HABP2	ENST00000351270	human	ensembl	74_37	+1	known	missense	c.641	p.A214V	0.003	pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pfscan_Kringle	pfam_Peptidase_S1,pfam_Kringle,pfam_EG-like_dom,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Kringle,smart_Peptidase_S1,pfscan_EG-like_dom,pfscan_Kringle,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	HABP2	HGNC	ENSG00000148702				110	0	0	72	25	25.7732
VWA2	0	genome.wustl.edu	37	10	116021030	116021030	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	116021030	116021030	C	T	SNP	VWA2	ENST00000392982	human	ensembl	74_37	+1	known	missense	c.347	p.A116V	0.279	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_EG-like_dom,pfam_EGF_extracell,smart_VWF_A,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_VWF_A	-	no_errors	VWA2	HGNC	ENSG00000165816				109	0	0	87	10	10.3093
INPP5F	0	genome.wustl.edu	37	10	121583376	121583376	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	121583376	121583376	G	A	SNP	INPP5F	ENST00000361976	human	ensembl	74_37	+1	known	missense	c.2211	p.M737I	1.000	NULL	pfam_Syja_N,pfam_Inositol_phosphatase,pfscan_Syja_N	-	no_errors	INPP5F	HGNC	ENSG00000198825				61	0	0	56	6	9.67742
BTBD16	0	genome.wustl.edu	37	10	124089066	124089066	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	124089066	124089066	G	A	SNP	BTBD16	ENST00000368994	human	ensembl	74_37	+1	known	missense	c.986	p.R329H	0.962	NULL	superfamily_BTB/POZ_fold	-	no_errors	BTBD16	HGNC	ENSG00000138152				43	0	0	34	3	8.10811
DMBT1	0	genome.wustl.edu	37	10	124380630	124380630	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	124380630	124380630	G	A	SNP	DMBT1	ENST00000338354	human	ensembl	74_37	+1	known	missense	c.4955	p.R1652Q	0.934	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_SRCR,pfam_CUB_dom,pfam_ZP_dom,superfamily_Srcr_rcpt-rel,superfamily_CUB_dom,smart_Srcr_rcpt-rel,smart_CUB_dom,smart_ZP_dom,pfscan_CUB_dom,pfscan_SRCR,pfscan_ZP_dom,prints_SRCR	-	no_errors	DMBT1	HGNC	ENSG00000187908				330	0	0	227	54	19.2171
CHST15	0	genome.wustl.edu	37	10	125801922	125801922	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	125801922	125801922	C	T	SNP	CHST15	ENST00000346248	human	ensembl	74_37	-1	known	missense	c.928	p.V310M	0.994	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	CHST15	HGNC	ENSG00000182022				56	0	0	40	7	14.8936
MGMT	0	genome.wustl.edu	37	10	131506287	131506287	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	131506287	131506287	A	G	SNP	MGMT	ENST00000306010	human	ensembl	74_37	+1	known	missense	c.347	p.H116R	1.000	pfam_MethylG_MeTrfase	pfam_MethylDNA_cys_MeTrfase_DNA-bd,pfam_MethylG_MeTrfase,superfamily_MethylDNA_cys_MeTrfase_DNA-bd,tigrfam_MethylDNA_cys_MeTrfase_DNA-bd	-	no_errors	MGMT	HGNC	ENSG00000170430				122	0	0	77	15	16.3043
TCERG1L	0	genome.wustl.edu	37	10	133107496	133107496	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	133107496	133107496	C	T	SNP	TCERG1L	ENST00000368642	human	ensembl	74_37	-1	known	missense	c.409	p.V137I	0.621	NULL	pfam_FF_domain,pfam_WW_dom,superfamily_FF_domain,superfamily_WW_dom,smart_WW_dom,smart_FF_domain,pfscan_WW_dom	-	no_errors	TCERG1L	HGNC	ENSG00000176769				57	0	0	31	14	31.1111
FAM188A	0	genome.wustl.edu	37	10	15885239	15885239	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	15885239	15885239	C	T	SNP	FAM188A	ENST00000277632	human	ensembl	74_37	-1	known	silent	c.207	p.S69	1.000	NULL	NULL	-	no_errors	FAM188A	HGNC	ENSG00000148481				139	0	0	102	20	16.3934
NEBL	0	genome.wustl.edu	37	10	21141488	21141488	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	21141488	21141488	C	T	SNP	NEBL	ENST00000377122	human	ensembl	74_37	-1	known	missense	c.994	p.V332I	0.197	pfam_Nebulin_35r-motif,smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	NEBL	HGNC	ENSG00000078114				44	0	0	34	4	10.5263
BMI1	0	genome.wustl.edu	37	10	22618263	22618263	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	22618263	22618263	C	T	SNP	BMI1	ENST00000376663	human	ensembl	74_37	+1	known	missense	c.773	p.A258V	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	BMI1	HGNC	ENSG00000168283				94	0	0	67	16	19.2771
KIAA1217	0	genome.wustl.edu	37	10	24833918	24833918	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	24833918	24833918	C	T	SNP	KIAA1217	ENST00000376454	human	ensembl	74_37	+1	known	silent	c.5220	p.S1740	0.018	NULL	pfam_AIP3_C	-	no_errors	KIAA1217	HGNC	ENSG00000120549				75	0	0	54	13	19.403
MYO3A	0	genome.wustl.edu	37	10	26414415	26414415	+	Silent	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	26414415	26414415	A	G	SNP	MYO3A	ENST00000265944	human	ensembl	74_37	+1	known	silent	c.1992	p.R664	0.954	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3A	HGNC	ENSG00000095777				109	0	0	97	16	14.1593
GAD2	0	genome.wustl.edu	37	10	26506539	26506539	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	26506539	26506539	C	T	SNP	GAD2	ENST00000259271	human	ensembl	74_37	+1	known	missense	c.77	p.A26V	1.000	NULL	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase	-	no_errors	GAD2	HGNC	ENSG00000136750				22	0	0	13	3	18.75
ACBD5	0	genome.wustl.edu	37	10	27497331	27497331	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	27497331	27497331	C	T	SNP	ACBD5	ENST00000375888	human	ensembl	74_37	-1	known	silent	c.1275	p.Q425	0.927	pirsf_M-assoc_diazepam-bd-inh	pfam_Acyl-CoA-binding_protein,superfamily_Acyl-CoA-binding_protein,pirsf_M-assoc_diazepam-bd-inh,prints_Acyl-CoA-binding_protein	-	no_errors	ACBD5	HGNC	ENSG00000107897				77	0	0	48	8	14.2857
PTCHD3	0	genome.wustl.edu	37	10	27702350	27702350	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	27702350	27702350	G	A	SNP	PTCHD3	ENST00000438700	human	ensembl	74_37	-1	known	missense	c.830	p.T277M	0.000	pfam_Patched	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD3	HGNC	ENSG00000182077				27	0	0	36	7	16.2791
MTPAP	0	genome.wustl.edu	37	10	30611528	30611528	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	30611528	30611528	G	A	SNP	MTPAP	ENST00000358107	human	ensembl	74_37	-1	known	silent	c.1401	p.S467	0.814	NULL	pfam_PAP_assoc	-	no_errors	MTPAP	HGNC	ENSG00000107951				46	0	0	31	7	18.4211
PFKP	0	genome.wustl.edu	37	10	3146003	3146003	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	3146003	3146003	G	A	SNP	PFKP	ENST00000381125	human	ensembl	74_37	+1	known	missense	c.487	p.A163T	0.000	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,tigrfam_6-phosphofructokinase_euk	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,prints_Phosphofructokinase,tigrfam_6-phosphofructokinase_euk	-	no_errors	PFKP	HGNC	ENSG00000067057				64	0	0	38	11	22.449
NRP1	0	genome.wustl.edu	37	10	33491741	33491741	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	33491741	33491741	C	T	SNP	NRP1	ENST00000374823	human	ensembl	74_37	-1	putative	missense	c.1942	p.V648M	0.008	pirsf_Neuropilin	pfam_CUB_dom,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_CUB_dom,smart_CUB_dom,smart_Coagulation_fac_5/8-C_type_dom,pirsf_Neuropilin,pfscan_CUB_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	NRP1	HGNC	ENSG00000099250				27	0	0	18	6	25
ZNF33A	0	genome.wustl.edu	37	10	38343774	38343774	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	38343774	38343774	A	G	SNP	ZNF33A	ENST00000432900	human	ensembl	74_37	+1	known	missense	c.740	p.N247S	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF33A	HGNC	ENSG00000189180				109	0	0	89	9	9.18367
HSD17B7P2	0	genome.wustl.edu	37	10	38658885	38658885	+	RNA	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	38658885	38658885	G	A	SNP	HSD17B7P2	ENST00000494540	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HSD17B7P2	HGNC	ENSG00000099251				51	0	0	38	8	17.3913
OR13A1	0	genome.wustl.edu	37	10	45798942	45798942	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	45798942	45798942	A	G	SNP	OR13A1	ENST00000374401	human	ensembl	74_37	-1	known	missense	c.929	p.L310S	1.000	prints_Olfact_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR13A1	HGNC	ENSG00000256574				106	0	0	77	18	18.9474
MARCH8	0	genome.wustl.edu	37	10	45956826	45956826	+	Silent	SNP	G	G	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	45956826	45956826	G	T	SNP	MARCH8	ENST00000319836	human	ensembl	74_37	-1	known	silent	c.276	p.P92	0.227	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH,pfscan_Znf_RING	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH,pfscan_Znf_RING	-	no_errors	MARCH8	HGNC	ENSG00000165406				36	0	0	26	8	23.5294
RBP3	0	genome.wustl.edu	37	10	48385926	48385926	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	48385926	48385926	G	A	SNP	RBP3	ENST00000224600	human	ensembl	74_37	-1	known	missense	c.3166	p.L1056F	1.000	pfam_Interphotoreceptor_retinol-bd,smart_Interphotoreceptor_retinol-bd	pfam_Interphotoreceptor_retinol-bd,pfam_Interphotorcpt_retinol-bd_N,smart_Interphotoreceptor_retinol-bd	-	no_errors	RBP3	HGNC	ENSG00000107618				72	0	0	50	16	24.2424
OGDHL	0	genome.wustl.edu	37	10	50959917	50959917	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	50959917	50959917	G	A	SNP	OGDHL	ENST00000374103	human	ensembl	74_37	-1	known	silent	c.705	p.S235	0.006	pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	pfam_DH_E1,pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	-	no_errors	OGDHL	HGNC	ENSG00000197444				153	0	0	96	24	20
CSTF2T	0	genome.wustl.edu	37	10	53458059	53458059	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	53458059	53458059	C	T	SNP	CSTF2T	ENST00000331173	human	ensembl	74_37	-1	known	silent	c.1251	p.A417	0.744	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CSTF2T	HGNC	ENSG00000177613				111	0	0	88	18	16.9811
ANK3	0	genome.wustl.edu	37	10	61835822	61835822	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	61835822	61835822	G	A	SNP	ANK3	ENST00000280772	human	ensembl	74_37	-1	known	missense	c.4817	p.T1606M	0.949	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150				131	0	0	102	19	15.7025
ARID5B	0	genome.wustl.edu	37	10	63759914	63759914	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	63759914	63759914	G	A	SNP	ARID5B	ENST00000279873	human	ensembl	74_37	+1	known	silent	c.567	p.S189	0.225	NULL	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID5B	HGNC	ENSG00000150347				77	0	0	82	15	15.4639
TACR2	0	genome.wustl.edu	37	10	71164698	71164698	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	71164698	71164698	C	T	SNP	TACR2	ENST00000373306	human	ensembl	74_37	-1	known	missense	c.1081	p.G361R	0.121	prints_NK2_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_NK2_rcpt,prints_Neurokn_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	TACR2	HGNC	ENSG00000075073				62	0	0	37	14	27.451
AIFM2	0	genome.wustl.edu	37	10	71880941	71880941	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	71880941	71880941	C	T	SNP	AIFM2	ENST00000307864	human	ensembl	74_37	-1	known	silent	c.321	p.L107	1.000	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,prints_FAD_pyr_nucl-diS_OxRdtase,prints_Pyridine_nuc-diS_OxRdtase_2	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_OxRdtase_NAD-bd_dom,prints_FAD_pyr_nucl-diS_OxRdtase,prints_Pyridine_nuc-diS_OxRdtase_2,prints_Rng_hydrolase-like	-	no_errors	AIFM2	HGNC	ENSG00000042286				31	0	0	23	12	34.2857
NPFFR1	0	genome.wustl.edu	37	10	72025905	72025905	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	72025905	72025905	T	C	SNP	NPFFR1	ENST00000277942	human	ensembl	74_37	-1	novel	missense	c.250	p.N84D	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_NPFF_rcpt_1,prints_NPFF_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	NPFFR1	HGNC	ENSG00000148734				61	0	0	49	7	12.5
CDH23	0	genome.wustl.edu	37	10	73538008	73538008	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	73538008	73538008	C	T	SNP	CDH23	ENST00000224721	human	ensembl	74_37	+1	putative	silent	c.5145	p.I1715	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH23	HGNC	ENSG00000107736				56	0	0	40	12	23.0769
ASCC1	0	genome.wustl.edu	37	10	73912658	73912658	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	73912658	73912658	C	T	SNP	ASCC1	ENST00000342444	human	ensembl	74_37	-1	known	missense	c.799	p.A267T	1.000	pfam_Kinase-A_anchor_nucl_local_sig,superfamily_RNA_ligase/cNuc_Pdiesterase,pirsf_Euk_LigT	pfam_Kinase-A_anchor_nucl_local_sig,pfam_KH_dom_type_1,superfamily_RNA_ligase/cNuc_Pdiesterase,pirsf_Euk_LigT,pfscan_KH_dom_type_1	-	no_errors	ASCC1	HGNC	ENSG00000138303				74	0	0	55	10	15.3846
MICU1	0	genome.wustl.edu	37	10	74268011	74268011	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	74268011	74268011	C	T	SNP	MICU1	ENST00000398761	human	ensembl	74_37	-1	known	missense	c.560	p.R187Q	1.000	NULL	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	MICU1	HGNC	ENSG00000107745				13	0	0	18	4	18.1818
PLAU	0	genome.wustl.edu	37	10	75674570	75674570	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	75674570	75674570	C	T	SNP	PLAU	ENST00000372764	human	ensembl	74_37	+1	known	missense	c.866	p.A289V	0.992	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_Kringle,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_Kringle,smart_Peptidase_S1,pfscan_EG-like_dom,pfscan_Kringle,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	PLAU	HGNC	ENSG00000122861				35	0	0	20	8	28.5714
KAT6B	0	genome.wustl.edu	37	10	76788343	76788343	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	76788343	76788343	G	A	SNP	KAT6B	ENST00000287239	human	ensembl	74_37	+1	known	missense	c.3761	p.R1254H	0.876	NULL	pfam_MOZ_SAS,pfam_Znf_PHD-finger,pfam_Histone_H1/H5_H15,superfamily_Acyl_CoA_acyltransferase,superfamily_Znf_FYVE_PHD,smart_Histone_H1/H5_H15,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	KAT6B	HGNC	ENSG00000156650				112	0	0	87	22	20.1835
KIN	0	genome.wustl.edu	37	10	7829837	7829837	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	7829837	7829837	C	T	SNP	KIN	ENST00000379562	human	ensembl	74_37	-1	known	silent	c.60	p.G20	0.651	NULL	pfam_DNA/RNA-bd_Kin17_cons_domain	-	no_errors	KIN	HGNC	ENSG00000151657				103	0	0	62	14	18.4211
TAF3	0	genome.wustl.edu	37	10	8007484	8007484	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	8007484	8007484	G	A	SNP	TAF3	ENST00000344293	human	ensembl	74_37	+1	known	missense	c.2011	p.A671T	0.442	NULL	pfam_BTP,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,superfamily_Histone-fold,smart_BTP,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	TAF3	HGNC	ENSG00000165632				73	0	0	56	12	17.6471
SFTPD	0	genome.wustl.edu	37	10	81701740	81701740	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	81701740	81701740	G	A	SNP	SFTPD	ENST00000372292	human	ensembl	74_37	-1	known	missense	c.520	p.R174C	0.009	pfam_Collagen	pfam_C-type_lectin,pfam_Collagen,pfam_Surfac_D-trimer,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	SFTPD	HGNC	ENSG00000133661				70	0	0	46	11	19.2982
NRG3	0	genome.wustl.edu	37	10	84711311	84711311	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	84711311	84711311	T	C	SNP	NRG3	ENST00000404547	human	ensembl	74_37	+1	known	missense	c.1141	p.F381L	1.000	NULL	pfscan_EG-like_dom	-	no_errors	NRG3	HGNC	ENSG00000185737				100	0	0	119	26	17.931
RGR	0	genome.wustl.edu	37	10	86014126	86014126	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	86014126	86014126	C	T	SNP	RGR	ENST00000359452	human	ensembl	74_37	+1	known	missense	c.569	p.A190V	0.344	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_RPE_GPCR,prints_GPCR_Rhodpsn	-	no_errors	RGR	HGNC	ENSG00000148604				105	0	0	65	13	16.6667
GRID1	0	genome.wustl.edu	37	10	87407104	87407104	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	87407104	87407104	C	T	SNP	GRID1	ENST00000327946	human	ensembl	74_37	-1	known	missense	c.2048	p.R683Q	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRID1	HGNC	ENSG00000182771				313	0	0	220	56	20.2899
PTEN	0	genome.wustl.edu	37	10	89653868	89653868	+	Splice_Site	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	89653868	89653868	T	C	SNP	PTEN	ENST00000371953	human	ensembl	74_37	+1	known	splice_site	c.164+2	e2+2	1.000	-	-	-	no_errors	PTEN	HGNC	ENSG00000171862				58	0	0	61	14	18.6667
FAS	0	genome.wustl.edu	37	10	90774042	90774042	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	90774042	90774042	G	A	SNP	FAS	ENST00000355740	human	ensembl	74_37	+1	known	nonsense	c.843	p.W281*	0.999	pfam_Death_domain,superfamily_DEATH-like_dom,smart_Death_domain,pfscan_Death_domain	pfam_Death_domain,pfam_TNFR/NGFR_Cys_rich_reg,superfamily_DEATH-like_dom,smart_TNFR/NGFR_Cys_rich_reg,smart_Death_domain,pfscan_Death_domain,pfscan_TNFR/NGFR_Cys_rich_reg,prints_Fas_rcpt	-	no_errors	FAS	HGNC	ENSG00000026103				137	0	0	108	22	16.9231
MYOF	0	genome.wustl.edu	37	10	95169361	95169361	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	95169361	95169361	C	T	SNP	MYOF	ENST00000359263	human	ensembl	74_37	-1	known	missense	c.569	p.R190Q	0.988	superfamily_C2_dom	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_dom,smart_C2_dom,smart_Peroxin/Ferlin,pfscan_C2_dom	-	no_errors	MYOF	HGNC	ENSG00000138119				263	0	0	194	34	14.9123
SORBS1	0	genome.wustl.edu	37	10	97194450	97194450	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	97194450	97194450	C	T	SNP	SORBS1	ENST00000361941	human	ensembl	74_37	-1	known	missense	c.101	p.R34H	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Sorb,superfamily_SH3_domain,smart_Sorb,smart_SH3_domain,pfscan_Sorb,pfscan_SH3_domain	-	no_errors	SORBS1	HGNC	ENSG00000095637				70	0	0	63	17	21.25
TLL2	0	genome.wustl.edu	37	10	98146799	98146799	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	98146799	98146799	C	T	SNP	TLL2	ENST00000357947	human	ensembl	74_37	-1	known	missense	c.1763	p.C588Y	1.000	pirsf_BMP_1/tolloid-like,pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pirsf_BMP_1/tolloid-like,pfam_CUB_dom,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,smart_Peptidase_Metallo,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,prints_Peptidase_M12A,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	TLL2	HGNC	ENSG00000095587				56	0	0	33	9	21.4286
SLIT1	0	genome.wustl.edu	37	10	98760984	98760984	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	98760984	98760984	C	T	SNP	SLIT1	ENST00000266058	human	ensembl	74_37	-1	known	missense	c.4490	p.C1497Y	1.000	smart_Cys_knot_C,pfscan_Cys_knot_C	pfam_Leu-rich_rpt,pfam_Laminin_G,pfam_EG-like_dom,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl_sf,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT1	HGNC	ENSG00000187122				66	0	0	41	8	16.3265
CRTAC1	0	genome.wustl.edu	37	10	99655720	99655720	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	99655720	99655720	G	A	SNP	CRTAC1	ENST00000370597	human	ensembl	74_37	-1	known	silent	c.1239	p.D413	1.000	NULL	pfam_FG-GAP,pfam_UnbV_ASPIC,pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom	-	no_errors	CRTAC1	HGNC	ENSG00000095713				47	0	0	34	8	19.0476
CNTN5	0	genome.wustl.edu	37	11	100211310	100211310	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	100211310	100211310	C	T	SNP	CNTN5	ENST00000279463	human	ensembl	74_37	+1	known	missense	c.2846	p.T949I	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN5	HGNC	ENSG00000149972				46	0	0	52	5	8.77193
DYNC2H1	0	genome.wustl.edu	37	11	103090682	103090682	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	103090682	103090682	G	T	SNP	DYNC2H1	ENST00000398093	human	ensembl	74_37	+1	known	missense	c.8871	p.K2957N	0.975	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240				38	0	0	33	5	13.1579
DYNC2H1	0	genome.wustl.edu	37	11	103128425	103128425	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	103128425	103128425	G	A	SNP	DYNC2H1	ENST00000398093	human	ensembl	74_37	+1	known	missense	c.10571	p.R3524H	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240				25	0	0	14	5	26.3158
CTR9	0	genome.wustl.edu	37	11	10793117	10793117	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	10793117	10793117	G	T	SNP	CTR9	ENST00000361367	human	ensembl	74_37	+1	known	nonsense	c.2398	p.G800*	1.000	NULL	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CTR9	HGNC	ENSG00000198730				111	0	0	94	12	11.3208
DLAT	0	genome.wustl.edu	37	11	111922036	111922036	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	111922036	111922036	G	A	SNP	DLAT	ENST00000280346	human	ensembl	74_37	+1	known	missense	c.1477	p.E493K	1.000	pfam_2-oxoacid_DH_actylTfrase,tigrfam_LAT1	pfam_2-oxoacid_DH_actylTfrase,pfam_Biotin_lipoyl,pfam_E3-bd,superfamily_Single_hybrid_motif,superfamily_E3-bd,pfscan_Biotin_lipoyl,tigrfam_LAT1	-	no_errors	DLAT	HGNC	ENSG00000150768				94	0	0	54	13	19.403
DRD2	0	genome.wustl.edu	37	11	113286314	113286314	+	Silent	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	113286314	113286314	A	G	SNP	DRD2	ENST00000355319	human	ensembl	74_37	-1	known	silent	c.552	p.I184	0.996	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Dopamine_D2_rcpt,prints_GPCR_Rhodpsn,prints_Dopamine_rcpt	-	no_errors	DRD2	HGNC	ENSG00000149295				30	0	0	19	3	13.6364
NNMT	0	genome.wustl.edu	37	11	114168792	114168792	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	114168792	114168792	C	T	SNP	NNMT	ENST00000299964	human	ensembl	74_37	+1	known	nonsense	c.274	p.Q92*	0.304	pfam_NNMT_TEMT_trans,pirsf_NNMT_TEMT_trans	pfam_NNMT_TEMT_trans,pirsf_NNMT_TEMT_trans	-	no_errors	NNMT	HGNC	ENSG00000166741				77	0	0	78	11	12.3596
DSCAML1	0	genome.wustl.edu	37	11	117651330	117651330	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	117651330	117651330	G	A	SNP	DSCAML1	ENST00000321322	human	ensembl	74_37	-1	known	missense	c.422	p.T141M	1.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DSCAML1	HGNC	ENSG00000177103				111	0	0	70	14	16.6667
TMPRSS4	0	genome.wustl.edu	37	11	117985906	117985906	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	117985906	117985906	C	T	SNP	TMPRSS4	ENST00000437212	human	ensembl	74_37	+1	known	missense	c.1063	p.R355W	0.009	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,pfam_LDrepeatLR_classA_rpt,superfamily_Trypsin-like_Pept_dom,superfamily_Srcr_rcpt-rel,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Srcr_rcpt-rel,smart_Peptidase_S1,pfscan_SRCR,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	TMPRSS4	HGNC	ENSG00000137648				36	0	0	13	4	23.5294
CD3E	0	genome.wustl.edu	37	11	118183570	118183570	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	118183570	118183570	T	C	SNP	CD3E	ENST00000361763	human	ensembl	74_37	+1	known	missense	c.341	p.L114P	1.000	NULL	pfam_Phos_immunorcpt_sig_ITAM,smart_Ig_sub2,smart_Phos_immunorcpt_sig_ITAM,pfscan_Phos_immunorcpt_sig_ITAM	-	no_errors	CD3E	HGNC	ENSG00000198851				75	0	0	54	11	16.9231
OAF	0	genome.wustl.edu	37	11	120096485	120096485	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	120096485	120096485	C	T	SNP	OAF	ENST00000328965	human	ensembl	74_37	+1	known	missense	c.347	p.A116V	1.000	NULL	NULL	-	no_errors	OAF	HGNC	ENSG00000184232				112	0	0	67	21	23.8636
GRIK4	0	genome.wustl.edu	37	11	120702613	120702613	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	120702613	120702613	G	A	SNP	GRIK4	ENST00000527524	human	ensembl	74_37	+1	known	silent	c.564	p.T188	0.729	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK4	HGNC	ENSG00000149403				57	0	0	54	6	10
TBCEL	0	genome.wustl.edu	37	11	120925921	120925921	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	120925921	120925921	G	A	SNP	TBCEL	ENST00000422003	human	ensembl	74_37	+1	known	missense	c.616	p.V206I	0.943	NULL	pfscan_Ubiquitin_supergroup	-	no_errors	TBCEL	HGNC	ENSG00000154114				70	0	0	52	6	10.3448
OR8G1	0	genome.wustl.edu	37	11	124120712	124120712	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	124120712	124120712	G	A	SNP	OR8G1	ENST00000341493	human	ensembl	74_37	+1	known	missense	c.290	p.C97Y	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8G1	HGNC	ENSG00000197849				132	0	0	93	21	18.4211
SRPR	0	genome.wustl.edu	37	11	126134982	126134982	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	126134982	126134982	C	T	SNP	SRPR	ENST00000332118	human	ensembl	74_37	-1	known	missense	c.1397	p.R466H	1.000	pfam_SRP54_GTPase_dom,pfam_ArgK,pfam_CobQ/CobB/MinD/ParA_Nub-bd_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_SRP54_GTPase_dom	pfam_Sig_recog_particle_rcpt_asu_N,pfam_SRP54_GTPase_dom,pfam_ArgK,pfam_CobQ/CobB/MinD/ParA_Nub-bd_dom,pfam_Signal_recog_particl_SRP54_hlx,superfamily_Longin-like_dom,superfamily_P-loop_NTPase,superfamily_Signal_recog_particl_SRP54_hlx,smart_Signal_recog_particl_SRP54_hlx,smart_AAA+_ATPase,smart_SRP54_GTPase_dom	-	no_errors	SRPR	HGNC	ENSG00000182934				35	0	0	23	2	8
MUC5B	0	genome.wustl.edu	37	11	1263879	1263879	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	1263879	1263879	G	A	SNP	MUC5B	ENST00000447027	human	ensembl	74_37	+1	known	silent	c.5778	p.T1926	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983				130	0	0	95	27	22.1311
KCNJ1	0	genome.wustl.edu	37	11	128709289	128709289	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	128709289	128709289	A	G	SNP	KCNJ1	ENST00000392664	human	ensembl	74_37	-1	known	missense	c.907	p.S303P	0.976	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir1.1,prints_K_chnl_inward-rec_Kir	-	no_errors	KCNJ1	HGNC	ENSG00000151704				61	0	0	55	12	17.9104
ARHGAP32	0	genome.wustl.edu	37	11	128842510	128842510	+	Silent	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	128842510	128842510	A	G	SNP	ARHGAP32	ENST00000310343	human	ensembl	74_37	-1	known	silent	c.3849	p.A1283	0.000	NULL	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,pfam_Phox,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Phox,smart_SH3_domain,smart_RhoGAP_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP32	HGNC	ENSG00000134909				83	0	0	60	10	14.2857
APLP2	0	genome.wustl.edu	37	11	129992333	129992333	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	129992333	129992333	T	C	SNP	APLP2	ENST00000263574	human	ensembl	74_37	+1	known	missense	c.847	p.Y283H	0.986	NULL	pfam_Amyloid_glyco_heparin-bd,pfam_APP_amyloid_C,pfam_Prot_inh_Kunz-m,superfamily_Amyloid_glyco_E2_domain,superfamily_Amyloid_glyco_heparin-bd,superfamily_Amyloid_glyco_Cu-bd,superfamily_Prot_inh_Kunz-m,smart_Amyloid_glyco_extra,smart_Prot_inh_Kunz-m,prints_Amyloid_glyco,prints_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	-	no_errors	APLP2	HGNC	ENSG00000084234				88	0	0	78	15	16.129
BRSK2	0	genome.wustl.edu	37	11	1467040	1467040	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	1467040	1467040	C	T	SNP	BRSK2	ENST00000382179	human	ensembl	74_37	+1	known	missense	c.1267	p.R423W	0.993	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	BRSK2	HGNC	ENSG00000174672				22	0	0	38	7	15.5556
PIK3C2A	0	genome.wustl.edu	37	11	17134211	17134211	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	17134211	17134211	C	T	SNP	PIK3C2A	ENST00000265970	human	ensembl	74_37	-1	known	silent	c.3324	p.S1108	0.492	superfamily_Kinase-like_dom	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,pfscan_C2_dom,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2A	HGNC	ENSG00000011405				131	0	0	99	20	16.8067
ABCC8	0	genome.wustl.edu	37	11	17483300	17483300	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	17483300	17483300	G	T	SNP	ABCC8	ENST00000302539	human	ensembl	74_37	-1	known	missense	c.652	p.L218M	1.000	prints_Sulphorea_rcpt	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,prints_Sulphorea_rcpt,prints_Surea_rcpt-1,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC8	HGNC	ENSG00000006071				109	0	0	84	9	9.67742
MYOD1	0	genome.wustl.edu	37	11	17741380	17741380	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	17741380	17741380	C	T	SNP	MYOD1	ENST00000250003	human	ensembl	74_37	+1	known	silent	c.51	p.D17	1.000	smart_Basic	pfam_Basic,pfam_Myf5,pfam_bHLH_dom,superfamily_bHLH_dom,smart_Basic,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MYOD1	HGNC	ENSG00000129152				71	0	0	43	8	15.6863
E2F8	0	genome.wustl.edu	37	11	19256468	19256468	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	19256468	19256468	C	T	SNP	E2F8	ENST00000250024	human	ensembl	74_37	-1	known	missense	c.589	p.G197R	1.000	NULL	pfam_E2F_TDP	-	no_errors	E2F8	HGNC	ENSG00000129173				73	0	0	52	6	10.3448
KIF18A	0	genome.wustl.edu	37	11	28045380	28045380	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	28045380	28045380	G	A	SNP	KIF18A	ENST00000263181	human	ensembl	74_37	-1	known	missense	c.2522	p.S841L	0.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF18A	HGNC	ENSG00000121621				45	0	0	38	10	20.8333
NLRP6	0	genome.wustl.edu	37	11	281195	281195	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	281195	281195	C	T	SNP	NLRP6	ENST00000312165	human	ensembl	74_37	+1	known	silent	c.1461	p.G487	0.001	pfscan_NACHT_NTPase	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP6	HGNC	ENSG00000174885				96	0	0	83	20	19.4175
DCDC1	0	genome.wustl.edu	37	11	30926645	30926645	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	30926645	30926645	G	A	SNP	DCDC1	ENST00000339794	human	ensembl	74_37	-1	known	missense	c.1408	p.R470W	0.982	NULL	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,pfscan_Doublecortin_dom,pfscan_Ricin_B_lectin	-	no_errors	DCDC1	HGNC	ENSG00000170959				37	0	0	37	9	19.5652
OSBPL5	0	genome.wustl.edu	37	11	3111807	3111807	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	3111807	3111807	C	T	SNP	OSBPL5	ENST00000263650	human	ensembl	74_37	-1	known	silent	c.2379	p.Q793	0.646	NULL	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL5	HGNC	ENSG00000021762				36	0	0	16	6	27.2727
CCDC73	0	genome.wustl.edu	37	11	32636061	32636061	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	32636061	32636061	G	A	SNP	CCDC73	ENST00000335185	human	ensembl	74_37	-1	known	silent	c.1803	p.F601	0.165	NULL	NULL	-	no_errors	CCDC73	HGNC	ENSG00000186714				55	0	0	51	6	10.5263
TSSC2	0	genome.wustl.edu	37	11	3423077	3423077	+	RNA	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	3423077	3423077	G	A	SNP	TSSC2	ENST00000529482	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	TSSC2	HGNC	ENSG00000223756				28	0	0	27	4	12.9032
PDHX	0	genome.wustl.edu	37	11	35006241	35006241	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	35006241	35006241	C	T	SNP	PDHX	ENST00000227868	human	ensembl	74_37	+1	known	missense	c.1148	p.A383V	0.883	pfam_2-oxoacid_DH_actylTfrase	pfam_2-oxoacid_DH_actylTfrase,pfam_Biotin_lipoyl,pfam_E3-bd,superfamily_Single_hybrid_motif,superfamily_E3-bd,pfscan_Biotin_lipoyl	-	no_errors	PDHX	HGNC	ENSG00000110435				127	0	0	91	21	18.75
CD44	0	genome.wustl.edu	37	11	35211585	35211585	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	35211585	35211585	G	A	SNP	CD44	ENST00000428726	human	ensembl	74_37	+1	known	missense	c.640	p.D214N	0.000	NULL	pfam_Link,superfamily_C-type_lectin_fold,smart_Link,pfscan_Link,prints_CD44_antigen,prints_Link	-	no_errors	CD44	HGNC	ENSG00000026508				117	1	0.847458	71	25	26.0417
ART5	0	genome.wustl.edu	37	11	3661166	3661166	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	3661166	3661166	G	A	SNP	ART5	ENST00000359918	human	ensembl	74_37	-1	known	missense	c.493	p.L165F	1.000	pfam_ART	pfam_ART,prints_ART	-	no_errors	ART5	HGNC	ENSG00000167311				43	0	0	39	8	17.0213
STIM1	0	genome.wustl.edu	37	11	4103494	4103494	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	4103494	4103494	G	A	SNP	STIM1	ENST00000300737	human	ensembl	74_37	+1	known	nonsense	c.1050	p.W350*	1.000	NULL	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	STIM1	HGNC	ENSG00000167323				60	0	0	46	20	30.303
STIM1	0	genome.wustl.edu	37	11	4112533	4112533	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	4112533	4112533	G	A	SNP	STIM1	ENST00000527651	human	ensembl	74_37	+1	novel	missense	c.1600	p.G534R	1.000	NULL	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	STIM1	HGNC	ENSG00000167323				76	0	0	60	12	16.6667
ACCS	0	genome.wustl.edu	37	11	44105261	44105261	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	44105261	44105261	G	A	SNP	ACCS	ENST00000263776	human	ensembl	74_37	+1	known	silent	c.1425	p.Q475	0.999	superfamily_PyrdxlP-dep_Trfase	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	-	no_errors	ACCS	HGNC	ENSG00000110455				22	0	0	22	3	12
EXT2	0	genome.wustl.edu	37	11	44135753	44135753	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	44135753	44135753	C	T	SNP	EXT2	ENST00000395673	human	ensembl	74_37	+1	known	silent	c.744	p.G248	0.238	pfam_Exostosin	pfam_HexNAc_Trfase_a,pfam_Exostosin	-	no_errors	EXT2	HGNC	ENSG00000151348				88	0	0	58	10	14.7059
TRIM68	0	genome.wustl.edu	37	11	4621714	4621714	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	4621714	4621714	G	A	SNP	TRIM68	ENST00000300747	human	ensembl	74_37	-1	known	missense	c.1250	p.P417L	0.219	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM68	HGNC	ENSG00000167333				82	0	0	50	14	21.875
OR51E1	0	genome.wustl.edu	37	11	4674693	4674693	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	4674693	4674693	A	G	SNP	OR51E1	ENST00000396952	human	ensembl	74_37	+1	known	missense	c.937	p.T313A	0.003	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51E1	HGNC	ENSG00000180785				87	0	0	99	6	5.71429
PTPRJ	0	genome.wustl.edu	37	11	48134376	48134376	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	48134376	48134376	G	A	SNP	PTPRJ	ENST00000418331	human	ensembl	74_37	+1	known	missense	c.193	p.A65T	0.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRJ	HGNC	ENSG00000149177				134	0	0	115	11	8.73016
PTDSS2	0	genome.wustl.edu	37	11	487453	487453	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	487453	487453	C	A	SNP	PTDSS2	ENST00000308020	human	ensembl	74_37	+1	known	missense	c.604	p.L202I	0.656	pfam_PSS	pfam_PSS	-	no_errors	PTDSS2	HGNC	ENSG00000174915				78	0	0	63	11	14.8649
OR4C15	0	genome.wustl.edu	37	11	55322311	55322311	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	55322311	55322311	G	A	SNP	OR4C15	ENST00000314644	human	ensembl	74_37	+1	known	missense	c.529	p.V177M	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4C15	HGNC	ENSG00000181939				81	0	0	73	8	9.87654
OR5L1	0	genome.wustl.edu	37	11	55579394	55579394	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	55579394	55579394	G	T	SNP	OR5L1	ENST00000333973	human	ensembl	74_37	+1	known	missense	c.452	p.C151F	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5L1	HGNC	ENSG00000186117				131	1	0.757576	105	32	23.3577
OR5D16	0	genome.wustl.edu	37	11	55606783	55606783	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	55606783	55606783	C	A	SNP	OR5D16	ENST00000378396	human	ensembl	74_37	+1	known	missense	c.556	p.L186M	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5D16	HGNC	ENSG00000205029				102	1	0.970874	74	15	16.8539
OR8U1	0	genome.wustl.edu	37	11	56143445	56143445	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	56143445	56143445	G	A	SNP	OR8U1	ENST00000302270	human	ensembl	74_37	+1	known	missense	c.346	p.A116T	0.772	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8U1	HGNC	ENSG00000172199				147	0	0	116	35	23.1788
OR5M8	0	genome.wustl.edu	37	11	56258583	56258583	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	56258583	56258583	C	A	SNP	OR5M8	ENST00000327216	human	ensembl	74_37	-1	known	missense	c.264	p.K88N	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5M8	HGNC	ENSG00000181371				123	0	0	90	14	13.4615
OR5M10	0	genome.wustl.edu	37	11	56345140	56345140	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	56345140	56345140	C	T	SNP	OR5M10	ENST00000526812	human	ensembl	74_37	-1	known	missense	c.58	p.D20N	0.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5M10	HGNC	ENSG00000254834				118	0	0	100	24	19.3548
TRIM5	0	genome.wustl.edu	37	11	5699619	5699619	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	5699619	5699619	G	A	SNP	TRIM5	ENST00000305836	human	ensembl	74_37	-1	known	nonsense	c.559	p.Q187*	0.000	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM5	HGNC	ENSG00000132256				79	0	0	64	22	25.5814
SLC43A1	0	genome.wustl.edu	37	11	57263539	57263539	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	57263539	57263539	G	A	SNP	SLC43A1	ENST00000278426	human	ensembl	74_37	-1	known	silent	c.657	p.I219	0.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC43A1	HGNC	ENSG00000149150				32	0	0	33	4	10.8108
OR9I1	0	genome.wustl.edu	37	11	57886596	57886596	+	Silent	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	57886596	57886596	A	G	SNP	OR9I1	ENST00000302610	human	ensembl	74_37	-1	known	silent	c.321	p.C107	0.961	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR9I1	HGNC	ENSG00000172377				51	0	0	38	8	17.3913
GLYATL2	0	genome.wustl.edu	37	11	58604809	58604809	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	58604809	58604809	T	C	SNP	GLYATL2	ENST00000287275	human	ensembl	74_37	-1	known	missense	c.248	p.D83G	0.003	pfam_Glycine_N-acyltransferase_N,superfamily_Acyl_CoA_acyltransferase	pfam_Glycine_N-acyltransferase_N,pfam_Glycine_N-acyltransferase_C,pfam_FR47,superfamily_Acyl_CoA_acyltransferase	-	no_errors	GLYATL2	HGNC	ENSG00000156689				112	0	0	96	22	18.6441
OR10V1	0	genome.wustl.edu	37	11	59480554	59480554	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	59480554	59480554	G	A	SNP	OR10V1	ENST00000307552	human	ensembl	74_37	-1	known	silent	c.765	p.C255	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10V1	HGNC	ENSG00000172289				66	0	0	59	14	19.1781
MRPL16	0	genome.wustl.edu	37	11	59574080	59574080	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	59574080	59574080	G	A	SNP	MRPL16	ENST00000300151	human	ensembl	74_37	-1	known	missense	c.496	p.R166C	0.956	pfam_Ribosomal_L10e/L16,superfamily_Ribosomal_L10e/L16,prints_Ribosomal_L16	pfam_Ribosomal_L10e/L16,superfamily_Ribosomal_L10e/L16,prints_Ribosomal_L16	-	no_errors	MRPL16	HGNC	ENSG00000166902				83	0	0	47	14	22.9508
TMEM132A	0	genome.wustl.edu	37	11	60704376	60704376	+	Silent	SNP	C	C	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	60704376	60704376	C	A	SNP	TMEM132A	ENST00000005286	human	ensembl	74_37	+1	known	silent	c.3072	p.S1024	1.000	NULL	NULL	-	no_errors	TMEM132A	HGNC	ENSG00000006118				15	0	0	15	5	25
SLC15A3	0	genome.wustl.edu	37	11	60707056	60707056	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	60707056	60707056	T	C	SNP	SLC15A3	ENST00000227880	human	ensembl	74_37	-1	known	missense	c.1331	p.Q444R	1.000	pfam_POT_fam,pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_POT_fam,pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC15A3	HGNC	ENSG00000110446				43	0	0	41	8	16.3265
CD6	0	genome.wustl.edu	37	11	60783258	60783258	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	60783258	60783258	G	A	SNP	CD6	ENST00000313421	human	ensembl	74_37	+1	known	silent	c.1461	p.E487	1.000	NULL	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_SRCR	-	no_errors	CD6	HGNC	ENSG00000013725				59	0	0	39	10	20.4082
DAK	0	genome.wustl.edu	37	11	61110231	61110231	+	Silent	SNP	C	C	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	61110231	61110231	C	A	SNP	DAK	ENST00000394900	human	ensembl	74_37	+1	known	silent	c.780	p.S260	0.063	pfam_Dak1,tigrfam_DhaK_ATP	pfam_Dak1,pfam_DhaL_dom,superfamily_DhaL_dom,tigrfam_DhaK_ATP	-	no_errors	DAK	HGNC	ENSG00000149476				39	0	0	23	7	23.3333
CDHR5	0	genome.wustl.edu	37	11	619769	619769	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	619769	619769	G	A	SNP	CDHR5	ENST00000358353	human	ensembl	74_37	-1	known	missense	c.1091	p.A364V	0.228	superfamily_Cadherin-like,pfscan_Cadherin	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	-	no_errors	CDHR5	HGNC	ENSG00000099834				18	0	0	20	2	9.09091
AHNAK	0	genome.wustl.edu	37	11	62292451	62292451	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	62292451	62292451	C	T	SNP	AHNAK	ENST00000378024	human	ensembl	74_37	-1	known	nonsense	c.9438	p.W3146*	0.953	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942				254	0	0	254	52	16.9935
METTL12	0	genome.wustl.edu	37	11	62433383	62433383	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	62433383	62433383	C	T	SNP	METTL12	ENST00000532971	human	ensembl	74_37	+1	known	missense	c.32	p.P11L	0.000	NULL	pfam_Methyltransf_11	-	no_errors	METTL12	HGNC	ENSG00000214756				54	0	0	30	9	23.0769
UBXN1	0	genome.wustl.edu	37	11	62446025	62446025	+	Silent	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	62446025	62446025	A	G	SNP	UBXN1	ENST00000294119	human	ensembl	74_37	-1	known	silent	c.162	p.T54	0.001	superfamily_UBA-like	pfam_UBX,pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,smart_UBX,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_UBX	-	no_errors	UBXN1	HGNC	ENSG00000162191				67	0	0	58	16	21.6216
CCKBR	0	genome.wustl.edu	37	11	6291537	6291537	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	6291537	6291537	G	A	SNP	CCKBR	ENST00000525462	human	ensembl	74_37	+1	known	missense	c.623	p.R208H	0.991	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Gastrin_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Gastrin_rcpt,prints_Cholcskin_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	CCKBR	HGNC	ENSG00000110148				72	0	0	41	4	8.88889
CCKBR	0	genome.wustl.edu	37	11	6292725	6292725	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	6292725	6292725	G	A	SNP	CCKBR	ENST00000525462	human	ensembl	74_37	+1	known	silent	c.1503	p.S501	0.003	prints_Cholcskin_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Gastrin_rcpt,prints_Cholcskin_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	CCKBR	HGNC	ENSG00000110148				72	0	0	44	12	21.4286
PLCB3	0	genome.wustl.edu	37	11	64026040	64026040	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	64026040	64026040	C	T	SNP	PLCB3	ENST00000279230	human	ensembl	74_37	+1	known	missense	c.1108	p.P370S	1.000	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_PInositol-sp_X_dom	pirsf_PLC-beta,pfam_PLC-beta_C,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,pfam_PLC-beta_CS,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,prints_Pinositol_PLipase_C,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB3	HGNC	ENSG00000149782				67	0	0	39	14	26.4151
GPR137	0	genome.wustl.edu	37	11	64054479	64054479	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	64054479	64054479	C	T	SNP	GPR137	ENST00000313074	human	ensembl	74_37	+1	known	nonsense	c.400	p.R134*	0.996	NULL	NULL	-	no_errors	GPR137	HGNC	ENSG00000173264				24	0	0	11	3	21.4286
APBB1	0	genome.wustl.edu	37	11	6424925	6424925	+	Silent	SNP	G	G	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	6424925	6424925	G	T	SNP	APBB1	ENST00000389906	human	ensembl	74_37	-1	known	silent	c.849	p.P283	0.480	pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	pfam_PTB/PI_dom,pfam_WW_dom,pfam_PTB,superfamily_WW_dom,smart_WW_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom,pfscan_WW_dom	-	no_errors	APBB1	HGNC	ENSG00000166313				37	0	0	41	4	8.88889
SLC22A11	0	genome.wustl.edu	37	11	64329603	64329603	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	64329603	64329603	G	A	SNP	SLC22A11	ENST00000301891	human	ensembl	74_37	+1	known	missense	c.625	p.G209S	0.521	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A11	HGNC	ENSG00000168065				41	0	0	22	7	24.1379
NRXN2	0	genome.wustl.edu	37	11	64428294	64428294	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	64428294	64428294	G	A	SNP	NRXN2	ENST00000265459	human	ensembl	74_37	-1	known	nonsense	c.2116	p.R706*	0.998	superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,pfscan_EG-like_dom	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN2	HGNC	ENSG00000110076				64	0	0	47	6	11.3208
VPS51	0	genome.wustl.edu	37	11	64878997	64878997	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	64878997	64878997	C	T	SNP	VPS51	ENST00000279281	human	ensembl	74_37	+1	known	missense	c.2287	p.R763C	1.000	NULL	pfam_COG8,pfam_Vacuolar_sorting-assoc_54,pfam_COG_su2_N,pfam_RZZ-complex_Zw10,superfamily_Cullin_repeat-like_dom	-	no_errors	VPS51	HGNC	ENSG00000149823				50	0	0	36	4	10
CAPN1	0	genome.wustl.edu	37	11	64977874	64977874	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	64977874	64977874	C	T	SNP	CAPN1	ENST00000279247	human	ensembl	74_37	+1	known	silent	c.2010	p.V670	0.982	NULL	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,pfscan_EF_hand_dom,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN1	HGNC	ENSG00000014216				21	0	0	13	3	18.75
PELI3	0	genome.wustl.edu	37	11	66241301	66241301	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	66241301	66241301	G	A	SNP	PELI3	ENST00000320740	human	ensembl	74_37	+1	known	missense	c.745	p.E249K	0.999	pfam_Pellino_fam	pfam_Pellino_fam	-	no_errors	PELI3	HGNC	ENSG00000174516				32	0	0	27	9	25
DPP3	0	genome.wustl.edu	37	11	66249898	66249898	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	66249898	66249898	G	A	SNP	DPP3	ENST00000360510	human	ensembl	74_37	+1	known	missense	c.227	p.R76H	0.035	pirsf_Dipeptidyl-peptase3	pirsf_Dipeptidyl-peptase3	-	no_errors	DPP3	HGNC	ENSG00000254986				41	0	0	32	11	25.5814
DPP3	0	genome.wustl.edu	37	11	66262922	66262922	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	66262922	66262922	C	T	SNP	DPP3	ENST00000360510	human	ensembl	74_37	+1	known	silent	c.1539	p.S513	0.964	pirsf_Dipeptidyl-peptase3	pirsf_Dipeptidyl-peptase3	-	no_errors	DPP3	HGNC	ENSG00000254986				16	0	0	16	5	23.8095
SPTBN2	0	genome.wustl.edu	37	11	66475139	66475139	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	66475139	66475139	G	A	SNP	SPTBN2	ENST00000309996	human	ensembl	74_37	-1	known	missense	c.1501	p.R501C	1.000	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN2	HGNC	ENSG00000173898				29	0	0	21	5	19.2308
DCHS1	0	genome.wustl.edu	37	11	6655115	6655115	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	6655115	6655115	C	T	SNP	DCHS1	ENST00000299441	human	ensembl	74_37	-1	known	missense	c.2123	p.R708H	0.945	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS1	HGNC	ENSG00000166341				72	0	0	64	7	9.85915
DCHS1	0	genome.wustl.edu	37	11	6661810	6661810	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	6661810	6661810	C	T	SNP	DCHS1	ENST00000299441	human	ensembl	74_37	-1	known	silent	c.1035	p.S345	0.705	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS1	HGNC	ENSG00000166341				142	0	0	80	27	25.2336
SSH3	0	genome.wustl.edu	37	11	67076941	67076941	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	67076941	67076941	C	T	SNP	SSH3	ENST00000308127	human	ensembl	74_37	+1	known	missense	c.1135	p.R379C	0.999	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,pfam_DEK_C,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	SSH3	HGNC	ENSG00000172830				52	0	0	31	6	16.2162
CARNS1	0	genome.wustl.edu	37	11	67191613	67191613	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	67191613	67191613	C	T	SNP	CARNS1	ENST00000445895	human	ensembl	74_37	+1	known	silent	c.2394	p.N798	0.891	pfscan_ATP-grasp	superfamily_PreATP-grasp_dom,superfamily_TIL_dom,pfscan_ATP-grasp	-	no_errors	CARNS1	HGNC	ENSG00000172508				28	0	0	20	5	20
RBMXL2	0	genome.wustl.edu	37	11	7111248	7111248	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	7111248	7111248	G	A	SNP	RBMXL2	ENST00000306904	human	ensembl	74_37	+1	known	silent	c.897	p.P299	1.000	NULL	pfam_RRM_dom,pfam_RBM1CTR,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBMXL2	HGNC	ENSG00000170748				24	0	0	15	4	21.0526
NUMA1	0	genome.wustl.edu	37	11	71725087	71725087	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	71725087	71725087	C	T	SNP	NUMA1	ENST00000393695	human	ensembl	74_37	-1	known	silent	c.3462	p.R1154	0.005	NULL	superfamily_Prefoldin	-	no_errors	NUMA1	HGNC	ENSG00000137497				48	0	0	51	4	7.27273
NUMA1	0	genome.wustl.edu	37	11	71725245	71725245	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	71725245	71725245	C	T	SNP	NUMA1	ENST00000393695	human	ensembl	74_37	-1	known	missense	c.3304	p.A1102T	0.013	NULL	superfamily_Prefoldin	-	no_errors	NUMA1	HGNC	ENSG00000137497				113	0	0	78	20	20.4082
ANAPC15	0	genome.wustl.edu	37	11	71821248	71821248	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	71821248	71821248	C	A	SNP	ANAPC15	ENST00000227618	human	ensembl	74_37	-1	known	missense	c.204	p.E68D	0.874	NULL	NULL	-	no_errors	ANAPC15	HGNC	ENSG00000110200				167	0	0	154	23	12.9944
RELT	0	genome.wustl.edu	37	11	73106159	73106159	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	73106159	73106159	G	A	SNP	RELT	ENST00000064780	human	ensembl	74_37	+1	known	silent	c.1074	p.Q358	1.000	NULL	pfam_TNF_rcpt_RELT,prints_TNFR_19-like	-	no_errors	RELT	HGNC	ENSG00000054967				73	0	0	49	13	20.9677
DNAJB13	0	genome.wustl.edu	37	11	73679454	73679454	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	73679454	73679454	G	A	SNP	DNAJB13	ENST00000339764	human	ensembl	74_37	+1	known	missense	c.671	p.R224H	1.000	pfam_DnaJ_C,superfamily_HSP40/DnaJ_pept-bd	pfam_DnaJ_C,pfam_DnaJ_domain,superfamily_DnaJ_domain,superfamily_HSP40/DnaJ_pept-bd,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJB13	HGNC	ENSG00000187726				73	0	0	33	7	17.5
TALDO1	0	genome.wustl.edu	37	11	763457	763457	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	763457	763457	G	A	SNP	TALDO1	ENST00000319006	human	ensembl	74_37	+1	known	missense	c.575	p.R192H	1.000	pfam_Transaldolase,tigrfam_Transaldolase_1	pfam_Transaldolase,tigrfam_Transaldolase_1	-	no_errors	TALDO1	HGNC	ENSG00000177156				171	1	0.581395	89	26	22.6087
RSF1	0	genome.wustl.edu	37	11	77386207	77386207	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	77386207	77386207	G	A	SNP	RSF1	ENST00000308488	human	ensembl	74_37	-1	known	missense	c.3436	p.R1146C	0.987	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	RSF1	HGNC	ENSG00000048649				68	0	0	57	15	20.8333
KCTD21	0	genome.wustl.edu	37	11	77884897	77884897	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	77884897	77884897	C	T	SNP	KCTD21	ENST00000340067	human	ensembl	74_37	-1	known	missense	c.704	p.G235D	1.000	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	KCTD21	HGNC	ENSG00000188997				145	0	0	134	32	19.2771
PIDD	0	genome.wustl.edu	37	11	799897	799897	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	799897	799897	G	A	SNP	PIDD	ENST00000347755	human	ensembl	74_37	-1	known	missense	c.2392	p.R798C	0.979	pfam_Death_domain,superfamily_DEATH-like_dom,smart_Death_domain,pfscan_Death_domain	pfam_Peptidase_S68_pidd,pfam_Death_domain,pfam_Leu-rich_rpt,pfam_ZU5,superfamily_DEATH-like_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Death_domain,pfscan_Death_domain,pfscan_ZU5	-	no_errors	PIDD	HGNC	ENSG00000177595				14	0	0	10	4	28.5714
PRCP	0	genome.wustl.edu	37	11	82560971	82560971	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	82560971	82560971	G	A	SNP	PRCP	ENST00000393399	human	ensembl	74_37	-1	known	nonsense	c.799	p.R267*	0.001	pfam_Peptidase_S28	pfam_Peptidase_S28	-	no_errors	PRCP	HGNC	ENSG00000137509				78	0	0	73	17	18.8889
DLG2	0	genome.wustl.edu	37	11	83984291	83984291	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	83984291	83984291	C	T	SNP	DLG2	ENST00000418306	human	ensembl	74_37	-1	known	missense	c.8	p.R3Q	1.000	pirsf_M-assoc_guanylate_kinase	pfam_PDZ,pfam_GK/Ca_channel_bsu,pfam_PDZ_assoc,pfam_SH3_2,pfam_SH3_domain,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pirsf_M-assoc_guanylate_kinase,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	DLG2	HGNC	ENSG00000150672				27	0	0	22	5	18.5185
SYTL2	0	genome.wustl.edu	37	11	85436047	85436047	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	85436047	85436047	C	T	SNP	SYTL2	ENST00000359152	human	ensembl	74_37	-1	known	missense	c.3025	p.A1009T	0.000	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	SYTL2	HGNC	ENSG00000137501				144	0	0	108	21	16.2791
CCDC83	0	genome.wustl.edu	37	11	85622403	85622403	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	85622403	85622403	A	T	SNP	CCDC83	ENST00000280245	human	ensembl	74_37	+1	known	missense	c.752	p.D251V	0.575	NULL	NULL	-	no_errors	CCDC83	HGNC	ENSG00000150676				107	0	0	106	12	10.1695
PICALM	0	genome.wustl.edu	37	11	85689112	85689112	+	Splice_Site	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	85689112	85689112	C	T	SNP	PICALM	ENST00000532317	human	ensembl	74_37	-1	known	splice_site	c.1653+1	e17+1	1.000	-	-	-	no_errors	PICALM	HGNC	ENSG00000073921				114	0	0	74	21	22.1053
CCDC81	0	genome.wustl.edu	37	11	86123507	86123507	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	86123507	86123507	C	A	SNP	CCDC81	ENST00000445632	human	ensembl	74_37	+1	known	missense	c.1297	p.L433M	1.000	NULL	superfamily_IHF-like_DNA-bd_dom	-	no_errors	CCDC81	HGNC	ENSG00000149201				107	0	0	86	14	14
UHRF1BP1L	0	genome.wustl.edu	37	12	100452815	100452815	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	100452815	100452815	A	G	SNP	UHRF1BP1L	ENST00000279907	human	ensembl	74_37	-1	known	missense	c.2240	p.V747A	0.001	NULL	NULL	-	no_errors	UHRF1BP1L	HGNC	ENSG00000111647				142	0	0	113	19	14.3939
SLC17A8	0	genome.wustl.edu	37	12	100790165	100790165	+	Silent	SNP	A	A	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	100790165	100790165	A	C	SNP	SLC17A8	ENST00000323346	human	ensembl	74_37	+1	known	silent	c.646	p.R216	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A8	HGNC	ENSG00000179520				36	0	0	25	5	16.6667
GABARAPL1	0	genome.wustl.edu	37	12	10374385	10374385	+	Splice_Site	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	10374385	10374385	G	A	SNP	GABARAPL1	ENST00000266458	human	ensembl	74_37	+1	known	splice_site	c.289-1	e4-1	1.000	-	-	-	no_errors	GABARAPL1	HGNC	ENSG00000139112				42	0	0	28	6	17.6471
TCP11L2	0	genome.wustl.edu	37	12	106715425	106715425	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	106715425	106715425	C	T	SNP	TCP11L2	ENST00000299045	human	ensembl	74_37	+1	known	silent	c.576	p.P192	0.005	pfam_Tcp11	pfam_Tcp11	-	no_errors	TCP11L2	HGNC	ENSG00000166046				112	0	0	94	20	17.5439
BTBD11	0	genome.wustl.edu	37	12	108011205	108011205	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	108011205	108011205	C	T	SNP	BTBD11	ENST00000280758	human	ensembl	74_37	+1	known	silent	c.2223	p.H741	0.986	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt	pfam_Ankyrin_rpt,pfam_BTB_POZ,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,superfamily_Histone-fold,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like	-	no_errors	BTBD11	HGNC	ENSG00000151136				46	0	0	32	5	13.5135
WSCD2	0	genome.wustl.edu	37	12	108603945	108603945	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	108603945	108603945	G	A	SNP	WSCD2	ENST00000261400	human	ensembl	74_37	+1	known	missense	c.545	p.G182D	1.000	pfam_WSC_carb-bd,smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd	pfam_WSC_carb-bd,superfamily_P-loop_NTPase,smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd	-	no_errors	WSCD2	HGNC	ENSG00000075035				23	0	0	13	9	40.9091
SART3	0	genome.wustl.edu	37	12	108942899	108942899	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	108942899	108942899	C	T	SNP	SART3	ENST00000228284	human	ensembl	74_37	-1	known	missense	c.404	p.R135H	1.000	smart_HAT	pfam_RRM_dom,pfam_LSM_interact,smart_HAT,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SART3	HGNC	ENSG00000075856				75	0	0	63	7	10
SART3	0	genome.wustl.edu	37	12	108954646	108954646	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	108954646	108954646	C	T	SNP	SART3	ENST00000228284	human	ensembl	74_37	-1	known	silent	c.285	p.Q95	1.000	NULL	pfam_RRM_dom,pfam_LSM_interact,smart_HAT,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SART3	HGNC	ENSG00000075856				24	0	0	14	5	26.3158
GPN3	0	genome.wustl.edu	37	12	110897617	110897617	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	110897617	110897617	G	A	SNP	GPN3	ENST00000543199	human	ensembl	74_37	-1	known	nonsense	c.325	p.R109*	0.841	pfam_Uncharacterised_ATP-bd,superfamily_P-loop_NTPase	pfam_Uncharacterised_ATP-bd,superfamily_P-loop_NTPase	-	no_errors	GPN3	HGNC	ENSG00000111231				118	0	0	110	23	17.2932
TAS2R50	0	genome.wustl.edu	37	12	11139175	11139175	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	11139175	11139175	G	A	SNP	TAS2R50	ENST00000506868	human	ensembl	74_37	-1	known	silent	c.285	p.S95	0.435	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R50	HGNC	ENSG00000212126				155	0	0	151	16	9.58084
PRB1	0	genome.wustl.edu	37	12	11506766	11506766	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	11506766	11506766	G	A	SNP	PRB1	ENST00000500254	human	ensembl	74_37	-1	known	nonsense	c.271	p.R91*	0.997	NULL	NULL	-	no_errors	PRB1	HGNC	ENSG00000251655				181	0	0	86	51	37.2263
NOS1	0	genome.wustl.edu	37	12	117710317	117710317	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	117710317	117710317	G	A	SNP	NOS1	ENST00000317775	human	ensembl	74_37	-1	known	missense	c.1712	p.A571V	0.999	pfam_NO_synthase_oxygenase_dom,superfamily_NO_synthase_oxygenase_dom,pirsf_NOS_euk	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,pfam_PDZ,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,superfamily_PDZ,smart_PDZ,pirsf_NOS_euk,pfscan_PDZ,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS1	HGNC	ENSG00000089250				55	0	0	35	6	14.6341
NOS1	0	genome.wustl.edu	37	12	117723955	117723955	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	117723955	117723955	C	T	SNP	NOS1	ENST00000317775	human	ensembl	74_37	-1	known	missense	c.1244	p.R415Q	1.000	pfam_NO_synthase_oxygenase_dom,superfamily_NO_synthase_oxygenase_dom,pirsf_NOS_euk	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,pfam_PDZ,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,superfamily_PDZ,smart_PDZ,pirsf_NOS_euk,pfscan_PDZ,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS1	HGNC	ENSG00000089250				74	0	0	67	5	6.94444
GCN1L1	0	genome.wustl.edu	37	12	120589033	120589033	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	120589033	120589033	C	T	SNP	GCN1L1	ENST00000300648	human	ensembl	74_37	-1	known	missense	c.4225	p.G1409S	1.000	superfamily_ARM-type_fold	pfam_DUF3554,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	GCN1L1	HGNC	ENSG00000089154				45	0	0	21	7	25
SIRT4	0	genome.wustl.edu	37	12	120750802	120750802	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	120750802	120750802	G	A	SNP	SIRT4	ENST00000202967	human	ensembl	74_37	+1	known	missense	c.908	p.R303H	1.000	pfscan_Ssirtuin_cat_dom	pfam_Sirtuin,pfscan_Ssirtuin_cat_dom	-	no_errors	SIRT4	HGNC	ENSG00000089163				112	0	0	73	32	30.4762
C12orf43	0	genome.wustl.edu	37	12	121448638	121448638	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	121448638	121448638	G	A	SNP	C12orf43	ENST00000288757	human	ensembl	74_37	-1	known	silent	c.280	p.L94	0.902	NULL	NULL	-	no_errors	C12orf43	HGNC	ENSG00000157895				95	0	0	70	19	21.3483
LRRC43	0	genome.wustl.edu	37	12	122677528	122677528	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	122677528	122677528	T	A	SNP	LRRC43	ENST00000339777	human	ensembl	74_37	+1	known	missense	c.1326	p.D442E	0.000	NULL	NULL	-	no_errors	LRRC43	HGNC	ENSG00000158113				35	0	0	20	6	23.0769
KNTC1	0	genome.wustl.edu	37	12	123060124	123060124	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	123060124	123060124	C	T	SNP	KNTC1	ENST00000333479	human	ensembl	74_37	+1	known	missense	c.2417	p.A806V	0.909	NULL	pfam_RZZ-complex_KNTC1/ROD_C,superfamily_Quino_amine_DH_bsu,superfamily_WD40_repeat_dom,superfamily_PAH	-	no_errors	KNTC1	HGNC	ENSG00000184445				26	0	0	19	4	17.3913
MANSC1	0	genome.wustl.edu	37	12	12491444	12491444	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	12491444	12491444	G	A	SNP	MANSC1	ENST00000535902	human	ensembl	74_37	-1	known	nonsense	c.274	p.Q92*	0.890	pfam_MANSC_N,smart_MANSC_N,pfscan_MANSC	pfam_MANSC_N,smart_MANSC_N,pfscan_MANSC	-	no_errors	MANSC1	HGNC	ENSG00000111261				125	0	0	80	15	15.7895
AACS	0	genome.wustl.edu	37	12	125613986	125613986	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	125613986	125613986	C	T	SNP	AACS	ENST00000316519	human	ensembl	74_37	+1	known	missense	c.1529	p.A510V	1.000	pfam_AMP-dep_Synth/Lig,tigrfam_Acac_CoA_synth	pfam_AMP-dep_Synth/Lig,tigrfam_Acac_CoA_synth	-	no_errors	AACS	HGNC	ENSG00000081760				170	0	0	158	15	8.67052
TMEM132B	0	genome.wustl.edu	37	12	126004054	126004054	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	126004054	126004054	G	A	SNP	TMEM132B	ENST00000299308	human	ensembl	74_37	+1	known	silent	c.1161	p.G387	0.613	NULL	NULL	-	no_errors	TMEM132B	HGNC	ENSG00000139364				67	0	0	51	15	22.7273
TMEM132D	0	genome.wustl.edu	37	12	130184915	130184915	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	130184915	130184915	G	A	SNP	TMEM132D	ENST00000422113	human	ensembl	74_37	-1	known	silent	c.408	p.D136	0.000	NULL	NULL	-	no_errors	TMEM132D	HGNC	ENSG00000151952				58	0	0	29	13	30.9524
SFSWAP	0	genome.wustl.edu	37	12	132238992	132238992	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	132238992	132238992	G	A	SNP	SFSWAP	ENST00000261674	human	ensembl	74_37	+1	known	missense	c.1402	p.A468T	1.000	pfam_Surp,superfamily_Surp,smart_Surp,pfscan_Surp	pfam_SWAP_N_domain,pfam_Surp,superfamily_Surp,smart_Surp,pfscan_Surp	-	no_errors	SFSWAP	HGNC	ENSG00000061936				52	0	0	29	14	32.5581
SFSWAP	0	genome.wustl.edu	37	12	132281835	132281835	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	132281835	132281835	G	A	SNP	SFSWAP	ENST00000261674	human	ensembl	74_37	+1	known	missense	c.2647	p.A883T	0.008	NULL	pfam_SWAP_N_domain,pfam_Surp,superfamily_Surp,smart_Surp,pfscan_Surp	-	no_errors	SFSWAP	HGNC	ENSG00000061936				47	0	0	29	5	14.7059
EP400	0	genome.wustl.edu	37	12	132514298	132514298	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	132514298	132514298	C	T	SNP	EP400	ENST00000333577	human	ensembl	74_37	+1	known	missense	c.5542	p.P1848S	0.985	NULL	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495				28	0	0	20	5	20
ATF7IP	0	genome.wustl.edu	37	12	14650841	14650841	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	14650841	14650841	T	C	SNP	ATF7IP	ENST00000261168	human	ensembl	74_37	+1	known	missense	c.3647	p.I1216T	1.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	ATF7IP	HGNC	ENSG00000171681				68	0	0	72	12	14.2857
LRTM2	0	genome.wustl.edu	37	12	1943444	1943444	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	1943444	1943444	G	A	SNP	LRTM2	ENST00000299194	human	ensembl	74_37	+1	known	missense	c.670	p.D224N	1.000	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRTM2	HGNC	ENSG00000166159				21	0	0	21	5	19.2308
ABCC9	0	genome.wustl.edu	37	12	22005044	22005044	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	22005044	22005044	T	C	SNP	ABCC9	ENST00000261200	human	ensembl	74_37	-1	known	missense	c.2756	p.Q919R	1.000	NULL	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_Sulphorea_rcpt,prints_Sulphonylurea_rcpt-2	-	no_errors	ABCC9	HGNC	ENSG00000069431				45	0	0	46	7	13.2075
ABCC9	0	genome.wustl.edu	37	12	22015949	22015949	+	Silent	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	22015949	22015949	A	G	SNP	ABCC9	ENST00000261200	human	ensembl	74_37	-1	known	silent	c.2277	p.P759	0.718	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_Sulphorea_rcpt,prints_Sulphonylurea_rcpt-2	-	no_errors	ABCC9	HGNC	ENSG00000069431				43	0	0	42	4	8.69565
SOX5	0	genome.wustl.edu	37	12	23893839	23893839	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	23893839	23893839	G	A	SNP	SOX5	ENST00000451604	human	ensembl	74_37	-1	known	missense	c.703	p.R235C	1.000	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX5	HGNC	ENSG00000134532				74	0	0	39	9	18.75
CASC1	0	genome.wustl.edu	37	12	25267796	25267796	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	25267796	25267796	A	G	SNP	CASC1	ENST00000395987	human	ensembl	74_37	-1	known	missense	c.1405	p.W469R	0.980	prints_Casc1	pfam_Casc1_domain,prints_Casc1	-	no_errors	CASC1	HGNC	ENSG00000118307				47	0	0	32	6	15.7895
KRAS	0	genome.wustl.edu	37	12	25398281	25398281	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	25398281	25398281	C	T	SNP	KRAS	ENST00000256078	human	ensembl	74_37	-1	known	missense	c.38	p.G13D	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	KRAS	HGNC	ENSG00000133703				16	0	0	25	7	21.875
CACNA1C	0	genome.wustl.edu	37	12	2566787	2566787	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	2566787	2566787	C	T	SNP	CACNA1C	ENST00000399634	human	ensembl	74_37	+1	known	silent	c.672	p.L224	0.022	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1C	HGNC	ENSG00000151067				112	0	0	100	17	14.5299
IFLTD1	0	genome.wustl.edu	37	12	25679780	25679780	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	25679780	25679780	G	T	SNP	IFLTD1	ENST00000458174	human	ensembl	74_37	-1	known	missense	c.601	p.Q201K	1.000	pfam_Lamin_tail_dom	pfam_Lamin_tail_dom	-	no_errors	IFLTD1	HGNC	ENSG00000152936				84	0	0	72	12	14.2857
CACNA1C	0	genome.wustl.edu	37	12	2602496	2602496	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	2602496	2602496	A	G	SNP	CACNA1C	ENST00000399634	human	ensembl	74_37	+1	known	missense	c.1057	p.M353V	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1C	HGNC	ENSG00000151067				187	0	0	161	29	15.2632
ARNTL2	0	genome.wustl.edu	37	12	27568857	27568857	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	27568857	27568857	A	G	SNP	ARNTL2	ENST00000266503	human	ensembl	74_37	+1	known	missense	c.1642	p.T548A	0.000	NULL	pfam_PAS_fold,pfam_PAS_fold_3,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,prints_Nuc_translocat,pfscan_PAS,pfscan_bHLH_dom,tigrfam_PAS	-	no_errors	ARNTL2	HGNC	ENSG00000029153				54	0	0	48	4	7.69231
ITFG2	0	genome.wustl.edu	37	12	2921981	2921981	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	2921981	2921981	T	G	SNP	ITFG2	ENST00000228799	human	ensembl	74_37	+1	known	missense	c.55	p.F19V	1.000	pfam_FG-GAP	pfam_FG-GAP,superfamily_WD40_repeat_dom	-	no_errors	ITFG2	HGNC	ENSG00000111203				94	0	0	70	7	9.09091
PKP2	0	genome.wustl.edu	37	12	32996207	32996207	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	32996207	32996207	G	A	SNP	PKP2	ENST00000070846	human	ensembl	74_37	-1	known	silent	c.1419	p.G473	0.001	superfamily_ARM-type_fold	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	PKP2	HGNC	ENSG00000057294				42	0	0	44	8	15.3846
ALG10	0	genome.wustl.edu	37	12	34179081	34179081	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	34179081	34179081	A	T	SNP	ALG10	ENST00000266483	human	ensembl	74_37	+1	known	missense	c.653	p.D218V	0.999	pfam_Alg10,pirsf_Alg10	pfam_Alg10,pirsf_Alg10	-	no_errors	ALG10	HGNC	ENSG00000139133				162	0	0	146	15	9.31677
ADAMTS20	0	genome.wustl.edu	37	12	43846079	43846079	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	43846079	43846079	T	G	SNP	ADAMTS20	ENST00000389420	human	ensembl	74_37	-1	known	missense	c.2077	p.M693L	1.000	prints_Peptidase_M12B_ADAM-TS	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS20	HGNC	ENSG00000173157				64	0	0	51	12	19.0476
CCND2	0	genome.wustl.edu	37	12	4385203	4385203	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	4385203	4385203	C	T	SNP	CCND2	ENST00000261254	human	ensembl	74_37	+1	known	silent	c.228	p.V76	0.995	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	pfam_Cyclin_N,pfam_Cyclin_C-dom,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	-	no_errors	CCND2	HGNC	ENSG00000118971				72	0	0	65	7	9.72222
PLEKHA8P1	0	genome.wustl.edu	37	12	45567083	45567083	+	RNA	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	45567083	45567083	C	T	SNP	PLEKHA8P1	ENST00000256692	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.124	-	-	-	no_errors	PLEKHA8P1	HGNC	ENSG00000134297				115	0	0	85	24	22.0183
PLEKHA8P1	0	genome.wustl.edu	37	12	45567160	45567160	+	RNA	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	45567160	45567160	C	T	SNP	PLEKHA8P1	ENST00000256692	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	PLEKHA8P1	HGNC	ENSG00000134297				129	0	0	105	22	17.3228
ANO6	0	genome.wustl.edu	37	12	45803165	45803165	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	45803165	45803165	T	C	SNP	ANO6	ENST00000425752	human	ensembl	74_37	+1	known	missense	c.1906	p.F636L	0.005	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO6	HGNC	ENSG00000177119				128	0	0	114	32	21.9178
SLC38A1	0	genome.wustl.edu	37	12	46622973	46622973	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	46622973	46622973	C	T	SNP	SLC38A1	ENST00000398637	human	ensembl	74_37	-1	known	missense	c.277	p.A93T	0.917	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC38A1	HGNC	ENSG00000111371				57	0	0	34	5	12.8205
PCED1B	0	genome.wustl.edu	37	12	47629502	47629502	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	47629502	47629502	G	A	SNP	PCED1B	ENST00000432328	human	ensembl	74_37	+1	known	missense	c.656	p.R219H	1.000	NULL	NULL	-	no_errors	PCED1B	HGNC	ENSG00000179715				17	0	0	12	4	25
VDR	0	genome.wustl.edu	37	12	48238574	48238574	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	48238574	48238574	C	T	SNP	VDR	ENST00000229022	human	ensembl	74_37	-1	known	silent	c.1239	p.K413	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_VitD_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	VDR	HGNC	ENSG00000111424				52	0	0	45	14	23.7288
KCNA6	0	genome.wustl.edu	37	12	4920249	4920249	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	4920249	4920249	C	T	SNP	KCNA6	ENST00000280684	human	ensembl	74_37	+1	known	missense	c.1042	p.R348W	0.311	pfam_Ion_trans_dom,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.6,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA6	HGNC	ENSG00000151079				40	0	0	28	8	22.2222
WNT10B	0	genome.wustl.edu	37	12	49361733	49361733	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	49361733	49361733	C	T	SNP	WNT10B	ENST00000301061	human	ensembl	74_37	-1	known	missense	c.707	p.R236H	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt10	-	no_errors	WNT10B	HGNC	ENSG00000169884				40	0	0	28	12	30
KMT2D	0	genome.wustl.edu	37	12	49424718	49424718	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	49424718	49424718	G	A	SNP	KMT2D	ENST00000301067	human	ensembl	74_37	-1	known	silent	c.13629	p.D4543	0.984	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2D	HGNC	ENSG00000167548				46	0	0	30	5	14.2857
KMT2D	0	genome.wustl.edu	37	12	49434552	49434552	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	49434552	49434552	C	T	SNP	KMT2D	ENST00000301067	human	ensembl	74_37	-1	known	missense	c.7001	p.R2334Q	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2D	HGNC	ENSG00000167548				14	0	0	16	7	30.4348
DHH	0	genome.wustl.edu	37	12	49484980	49484980	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	49484980	49484980	C	T	SNP	DHH	ENST00000266991	human	ensembl	74_37	-1	known	missense	c.496	p.A166T	1.000	pfam_Hedgehog_signaling_dom,superfamily_Hedgehog_sig/DD-Pept_Zn-bd_dom,pirsf_Hedgehog,prints_Hedgehog	pfam_Hedgehog_signaling_dom,pfam_Hint_dom,superfamily_Hedgehog_sig/DD-Pept_Zn-bd_dom,smart_Hint_dom_N,smart_Hint_dom_C,pirsf_Hedgehog,prints_Hedgehog	-	no_errors	DHH	HGNC	ENSG00000139549				127	0	0	104	23	18.1102
DNAJC22	0	genome.wustl.edu	37	12	49743155	49743155	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	49743155	49743155	G	A	SNP	DNAJC22	ENST00000395069	human	ensembl	74_37	+1	known	missense	c.500	p.R167H	0.996	NULL	pfam_DnaJ_domain,pfam_TM2,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJC22	HGNC	ENSG00000178401				81	0	0	69	15	17.8571
ASIC1	0	genome.wustl.edu	37	12	50452564	50452564	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	50452564	50452564	C	T	SNP	ASIC1	ENST00000228468	human	ensembl	74_37	+1	known	silent	c.15	p.A5	0.944	NULL	pfam_Na+channel_ASC,prints_Na+channel_ASC	-	no_errors	ASIC1	HGNC	ENSG00000110881				55	0	0	32	7	17.9487
SLC11A2	0	genome.wustl.edu	37	12	51393164	51393164	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	51393164	51393164	C	T	SNP	SLC11A2	ENST00000394904	human	ensembl	74_37	-1	known	missense	c.658	p.A220T	1.000	pfam_NRAMP-like,prints_NRAMP-like,tigrfam_NRAMP-like	pfam_NRAMP-like,prints_NRAMP-like,tigrfam_NRAMP-like	-	no_errors	SLC11A2	HGNC	ENSG00000110911				104	0	0	96	21	17.9487
SLC11A2	0	genome.wustl.edu	37	12	51393180	51393180	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	51393180	51393180	G	A	SNP	SLC11A2	ENST00000394904	human	ensembl	74_37	-1	known	silent	c.642	p.G214	0.997	pfam_NRAMP-like,prints_NRAMP-like,tigrfam_NRAMP-like	pfam_NRAMP-like,prints_NRAMP-like,tigrfam_NRAMP-like	-	no_errors	SLC11A2	HGNC	ENSG00000110911				89	0	0	83	16	16.1616
KRT75	0	genome.wustl.edu	37	12	52826943	52826943	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	52826943	52826943	G	A	SNP	KRT75	ENST00000252245	human	ensembl	74_37	-1	known	missense	c.592	p.P198S	0.997	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT75	HGNC	ENSG00000170454				96	0	0	75	22	22.6804
KRT74	0	genome.wustl.edu	37	12	52962173	52962173	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	52962173	52962173	G	A	SNP	KRT74	ENST00000305620	human	ensembl	74_37	-1	known	missense	c.1135	p.R379C	0.617	pfam_IF	pfam_IF,prints_Keratin_II	-	no_errors	KRT74	HGNC	ENSG00000170484				30	0	0	25	6	19.3548
ESPL1	0	genome.wustl.edu	37	12	53680232	53680232	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	53680232	53680232	C	A	SNP	ESPL1	ENST00000257934	human	ensembl	74_37	+1	known	missense	c.3712	p.P1238T	0.016	NULL	pfam_Peptidase_C50,superfamily_DsrEFH-like	-	no_errors	ESPL1	HGNC	ENSG00000135476				172	1	0.578035	140	20	12.5
ESPL1	0	genome.wustl.edu	37	12	53681832	53681832	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	53681832	53681832	G	A	SNP	ESPL1	ENST00000257934	human	ensembl	74_37	+1	known	missense	c.4253	p.R1418Q	0.355	NULL	pfam_Peptidase_C50,superfamily_DsrEFH-like	-	no_errors	ESPL1	HGNC	ENSG00000135476				57	0	0	24	7	22.5806
ESPL1	0	genome.wustl.edu	37	12	53681905	53681905	+	Silent	SNP	A	A	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	53681905	53681905	A	T	SNP	ESPL1	ENST00000257934	human	ensembl	74_37	+1	known	silent	c.4326	p.P1442	0.019	NULL	pfam_Peptidase_C50,superfamily_DsrEFH-like	-	no_errors	ESPL1	HGNC	ENSG00000135476				22	0	0	19	4	17.3913
ESPL1	0	genome.wustl.edu	37	12	53681913	53681913	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	53681913	53681913	C	T	SNP	ESPL1	ENST00000257934	human	ensembl	74_37	+1	known	missense	c.4334	p.A1445V	0.263	NULL	pfam_Peptidase_C50,superfamily_DsrEFH-like	-	no_errors	ESPL1	HGNC	ENSG00000135476				22	0	0	16	4	20
C12orf10	0	genome.wustl.edu	37	12	53700549	53700549	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	53700549	53700549	C	A	SNP	C12orf10	ENST00000549488	human	ensembl	74_37	+1	putative	missense	c.362	p.S121Y	0.040	pfam_Met-dep_prot_hydro	pfam_Met-dep_prot_hydro	-	no_errors	C12orf10	HGNC	ENSG00000139637				120	0	0	87	17	16.3462
AAAS	0	genome.wustl.edu	37	12	53701642	53701642	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	53701642	53701642	G	A	SNP	AAAS	ENST00000209873	human	ensembl	74_37	-1	known	missense	c.1403	p.A468V	1.000	NULL	pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	AAAS	HGNC	ENSG00000094914				80	0	0	77	12	13.4831
PMEL	0	genome.wustl.edu	37	12	56348059	56348059	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	56348059	56348059	C	T	SNP	PMEL	ENST00000360714	human	ensembl	74_37	-1	known	missense	c.1946	p.R649H	0.000	NULL	pfam_PKD_dom,superfamily_PKD_dom,smart_PKD/Chitinase_dom,pfscan_PKD_dom	-	no_errors	PMEL	HGNC	ENSG00000185664				66	0	0	44	8	15.3846
MIP	0	genome.wustl.edu	37	12	56847512	56847512	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	56847512	56847512	C	T	SNP	MIP	ENST00000257979	human	ensembl	74_37	-1	known	missense	c.388	p.A130T	1.000	pfam_MIP,superfamily_Aquaporin-like,tigrfam_MIP	pfam_MIP,superfamily_Aquaporin-like,prints_MIP,tigrfam_MIP	-	no_errors	MIP	HGNC	ENSG00000135517				25	0	0	16	3	15.7895
SDR9C7	0	genome.wustl.edu	37	12	57323219	57323219	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	57323219	57323219	G	A	SNP	SDR9C7	ENST00000293502	human	ensembl	74_37	-1	known	missense	c.679	p.P227S	0.991	NULL	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	SDR9C7	HGNC	ENSG00000170426				72	0	0	51	17	25
NAB2	0	genome.wustl.edu	37	12	57486328	57486328	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	57486328	57486328	G	A	SNP	NAB2	ENST00000300131	human	ensembl	74_37	+1	known	missense	c.1055	p.R352Q	1.000	pfam_NAB_co-repressor_dom	pfam_NAB_co-repressor_dom,pfam_Nab_N,superfamily_SAM/pointed	-	no_errors	NAB2	HGNC	ENSG00000166886				72	0	0	44	5	10.2041
LRP1	0	genome.wustl.edu	37	12	57574224	57574224	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	57574224	57574224	G	A	SNP	LRP1	ENST00000243077	human	ensembl	74_37	+1	known	missense	c.5348	p.R1783Q	1.000	smart_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384				74	0	0	79	8	9.1954
SHMT2	0	genome.wustl.edu	37	12	57627627	57627627	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	57627627	57627627	G	A	SNP	SHMT2	ENST00000328923	human	ensembl	74_37	+1	known	missense	c.1219	p.A407T	1.000	pfam_Ser_HO-MeTrfase,superfamily_PyrdxlP-dep_Trfase,pirsf_Ser_HO-MeTrfase	pfam_Ser_HO-MeTrfase,superfamily_PyrdxlP-dep_Trfase,pirsf_Ser_HO-MeTrfase	-	no_errors	SHMT2	HGNC	ENSG00000182199				31	0	0	26	4	13.3333
MARS	0	genome.wustl.edu	37	12	57909800	57909800	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	57909800	57909800	C	T	SNP	MARS	ENST00000315473	human	ensembl	74_37	+1	known	missense	c.1787	p.S596L	0.001	NULL	pfam_Methionyl/Leucyl_tRNA_Synth,superfamily_tRNAsynth_1a_anticodon-bd,prints_Met-tRNA_synth,tigrfam_Met-tRNA_synth	-	no_errors	MARS	HGNC	ENSG00000166986				45	0	0	20	5	20
MBD6	0	genome.wustl.edu	37	12	57921419	57921419	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	57921419	57921419	C	A	SNP	MBD6	ENST00000355673	human	ensembl	74_37	+1	known	missense	c.2212	p.P738T	1.000	NULL	superfamily_DNA-bd_dom,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MBD6	HGNC	ENSG00000166987				95	0	0	65	15	18.75
SLC26A10	0	genome.wustl.edu	37	12	58015593	58015593	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	58015593	58015593	C	A	SNP	SLC26A10	ENST00000320442	human	ensembl	74_37	+1	known	missense	c.676	p.L226I	1.000	pfam_Sulph_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom	-	no_errors	SLC26A10	HGNC	ENSG00000135502				21	0	0	7	4	36.3636
MON2	0	genome.wustl.edu	37	12	62979234	62979234	+	Silent	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	62979234	62979234	T	C	SNP	MON2	ENST00000393630	human	ensembl	74_37	+1	known	silent	c.4863	p.H1621	0.965	NULL	pfam_DUF1981_Sec7_assoc,superfamily_ARM-type_fold	-	no_errors	MON2	HGNC	ENSG00000061987				31	0	0	37	8	17.7778
XPOT	0	genome.wustl.edu	37	12	64812728	64812728	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	64812728	64812728	A	G	SNP	XPOT	ENST00000332707	human	ensembl	74_37	+1	known	missense	c.343	p.T115A	1.000	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	XPOT	HGNC	ENSG00000184575				92	0	0	87	7	7.44681
XPOT	0	genome.wustl.edu	37	12	64812733	64812733	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	64812733	64812733	G	A	SNP	XPOT	ENST00000332707	human	ensembl	74_37	+1	known	silent	c.348	p.E116	0.939	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	XPOT	HGNC	ENSG00000184575				95	0	0	90	7	7.21649
ACRBP	0	genome.wustl.edu	37	12	6748005	6748005	+	RNA	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	6748005	6748005	G	A	SNP	ACRBP	ENST00000540513	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	ACRBP	HGNC	ENSG00000111644				14	0	0	15	11	42.3077
ACRBP	0	genome.wustl.edu	37	12	6752705	6752705	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	6752705	6752705	C	T	SNP	ACRBP	ENST00000229243	human	ensembl	74_37	-1	known	silent	c.1077	p.S359	0.994	NULL	pfam_Proacrosin-bd	-	no_errors	ACRBP	HGNC	ENSG00000111644				63	0	0	49	10	16.9492
MLF2	0	genome.wustl.edu	37	12	6861114	6861114	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	6861114	6861114	G	A	SNP	MLF2	ENST00000203630	human	ensembl	74_37	-1	known	missense	c.157	p.P53S	1.000	pfam_Myeloid_leukemia_factor	pfam_Myeloid_leukemia_factor	-	no_errors	MLF2	HGNC	ENSG00000089693				73	0	0	51	8	13.5593
NUP107	0	genome.wustl.edu	37	12	69109410	69109410	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	69109410	69109410	C	A	SNP	NUP107	ENST00000229179	human	ensembl	74_37	+1	known	missense	c.973	p.P325T	1.000	pfam_Nup84_Nup100	pfam_Nup84_Nup100	-	no_errors	NUP107	HGNC	ENSG00000111581				168	0	0	120	24	16.6667
TPI1	0	genome.wustl.edu	37	12	6978878	6978878	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	6978878	6978878	G	A	SNP	TPI1	ENST00000229270	human	ensembl	74_37	+1	known	missense	c.595	p.V199I	1.000	pfam_Triosephosphate_isomerase,superfamily_Triosephosphate_isomerase,tigrfam_Triosephosphate_isomerase	pfam_Triosephosphate_isomerase,superfamily_Triosephosphate_isomerase,tigrfam_Triosephosphate_isomerase	-	no_errors	TPI1	HGNC	ENSG00000111669				97	0	0	76	21	21.6495
CCT2	0	genome.wustl.edu	37	12	69980567	69980567	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	69980567	69980567	T	C	SNP	CCT2	ENST00000299300	human	ensembl	74_37	+1	known	missense	c.113	p.L38S	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1,tigrfam_Chap_CCT_beta	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_beta	-	no_errors	CCT2	HGNC	ENSG00000166226				178	0	0	169	19	10.1064
LRRC23	0	genome.wustl.edu	37	12	7014793	7014793	+	RNA	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	7014793	7014793	G	A	SNP	LRRC23	ENST00000449039	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.990	-	-	-	no_errors	LRRC23	HGNC	ENSG00000010626				89	0	0	66	14	17.5
TBC1D15	0	genome.wustl.edu	37	12	72307610	72307610	+	Silent	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	72307610	72307610	T	C	SNP	TBC1D15	ENST00000550746	human	ensembl	74_37	+1	known	silent	c.1356	p.Y452	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_DUF3548,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D15	HGNC	ENSG00000121749				37	0	0	35	12	25.5319
CD163L1	0	genome.wustl.edu	37	12	7586130	7586130	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	7586130	7586130	G	A	SNP	CD163L1	ENST00000313599	human	ensembl	74_37	-1	known	silent	c.285	p.F95	0.000	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_SRCR	-	no_errors	CD163L1	HGNC	ENSG00000177675				95	0	0	89	18	16.8224
E2F7	0	genome.wustl.edu	37	12	77444494	77444494	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	77444494	77444494	C	T	SNP	E2F7	ENST00000322886	human	ensembl	74_37	-1	known	missense	c.400	p.E134K	1.000	NULL	pfam_E2F_TDP	-	no_errors	E2F7	HGNC	ENSG00000165891				86	0	0	69	16	18.8235
PPP1R12A	0	genome.wustl.edu	37	12	80328667	80328667	+	Silent	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	80328667	80328667	T	C	SNP	PPP1R12A	ENST00000261207	human	ensembl	74_37	-1	known	silent	c.45	p.K15	1.000	pirsf_Pase-1_reg_su_12A/B/C_euk,superfamily_Ankyrin_rpt-contain_dom	pirsf_Pase-1_reg_su_12A/B/C_euk,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	PPP1R12A	HGNC	ENSG00000058272				10	0	0	6	4	40
OTOGL	0	genome.wustl.edu	37	12	80750652	80750652	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	80750652	80750652	C	G	SNP	OTOGL	ENST00000458043	human	ensembl	74_37	+1	known	missense	c.5950	p.Q1984E	1.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_AbfB,superfamily_AbfB,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	OTOGL	HGNC	ENSG00000165899				54	0	0	49	12	19.6721
NECAP1	0	genome.wustl.edu	37	12	8245544	8245544	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	8245544	8245544	C	T	SNP	NECAP1	ENST00000339754	human	ensembl	74_37	+1	known	missense	c.569	p.P190L	0.997	NULL	pfam_NECAP-1	-	no_errors	NECAP1	HGNC	ENSG00000089818				121	0	0	101	45	30.8219
RIMKLB	0	genome.wustl.edu	37	12	8926004	8926004	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	8926004	8926004	G	A	SNP	RIMKLB	ENST00000357529	human	ensembl	74_37	+1	known	missense	c.785	p.G262D	1.000	pfam_ATP-grasp_RimK-type,pfam_GSHS_ATP-bd,pfam_ATP-grasp_DUF201-type,pfscan_ATP-grasp,tigrfam_RpS6_RimK/Lys_biosynth_LsyX	pfam_ATP-grasp_RimK-type,pfam_GSHS_ATP-bd,pfam_ATP-grasp_DUF201-type,pfscan_ATP-grasp,tigrfam_RpS6_RimK/Lys_biosynth_LsyX	-	no_errors	RIMKLB	HGNC	ENSG00000166532				134	0	0	103	23	18.254
DUSP6	0	genome.wustl.edu	37	12	89744647	89744647	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	89744647	89744647	G	A	SNP	DUSP6	ENST00000279488	human	ensembl	74_37	-1	known	nonsense	c.556	p.R186*	1.000	pirsf_MKP	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,pirsf_MKP,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP	-	no_errors	DUSP6	HGNC	ENSG00000139318				74	0	0	71	19	21.1111
DCN	0	genome.wustl.edu	37	12	91552114	91552114	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	91552114	91552114	C	T	SNP	DCN	ENST00000052754	human	ensembl	74_37	-1	known	missense	c.497	p.R166Q	0.908	pirsf_SLRP_I_decor/aspor/byglycan	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,pirsf_SLRP_I_decor/aspor/byglycan	-	no_errors	DCN	HGNC	ENSG00000011465				126	0	0	102	18	15
A2M	0	genome.wustl.edu	37	12	9246138	9246138	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	9246138	9246138	C	T	SNP	A2M	ENST00000318602	human	ensembl	74_37	-1	known	silent	c.2163	p.V721	0.000	NULL	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,superfamily_Beta-lactam/transpept-like,superfamily_Cupredoxin	-	no_errors	A2M	HGNC	ENSG00000175899				47	0	0	41	9	18
C12orf55	0	genome.wustl.edu	37	12	97079013	97079013	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	97079013	97079013	C	T	SNP	C12orf55	ENST00000524981	human	ensembl	74_37	+1	putative	missense	c.6011	p.A2004V	1.000	NULL	superfamily_Fibronectin_type3	-	no_errors	C12orf55	HGNC	ENSG00000188596				59	0	0	46	12	20.6897
TMTC4	0	genome.wustl.edu	37	13	101315320	101315320	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	13	101315320	101315320	G	A	SNP	TMTC4	ENST00000342624	human	ensembl	74_37	-1	known	silent	c.450	p.G150	0.748	NULL	pfam_TPR_1,pfam_DUF1736,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC4	HGNC	ENSG00000125247				64	0	0	61	12	16.4384
NALCN	0	genome.wustl.edu	37	13	101910909	101910909	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	13	101910909	101910909	G	A	SNP	NALCN	ENST00000251127	human	ensembl	74_37	-1	known	missense	c.1151	p.S384F	0.995	NULL	pfam_Ion_trans_dom	-	no_errors	NALCN	HGNC	ENSG00000102452				48	0	0	52	5	8.77193
TEX30	0	genome.wustl.edu	37	13	103418898	103418898	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	13	103418898	103418898	T	C	SNP	TEX30	ENST00000376027	human	ensembl	74_37	-1	putative	missense	c.331	p.S111G	1.000	NULL	NULL	-	no_errors	TEX30	HGNC	ENSG00000151287				48	0	0	43	6	12.2449
F7	0	genome.wustl.edu	37	13	113771857	113771857	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	13	113771857	113771857	C	T	SNP	F7	ENST00000375581	human	ensembl	74_37	+1	known	missense	c.752	p.A251V	0.998	pirsf_Pept_S1A_FX,pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Peptidase_S1	pirsf_Pept_S1A_FX,pfam_Peptidase_S1,pfam_GLA_domain,pfam_Peptidase_S1A_nudel,pfam_EG-like_dom,superfamily_Trypsin-like_Pept_dom,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Peptidase_S1,prints_Peptidase_S1A,prints_GLA_domain,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Peptidase_S1	-	no_errors	F7	HGNC	ENSG00000057593				98	0	0	58	16	21.6216
PCID2	0	genome.wustl.edu	37	13	113854825	113854825	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	13	113854825	113854825	G	A	SNP	PCID2	ENST00000246505	human	ensembl	74_37	-1	known	silent	c.42	p.Y14	0.207	NULL	pfam_PCI_dom,smart_PAM	-	no_errors	PCID2	HGNC	ENSG00000126226				81	0	0	64	12	15.7895
GAS6	0	genome.wustl.edu	37	13	114535359	114535359	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	13	114535359	114535359	G	A	SNP	GAS6	ENST00000357389	human	ensembl	74_37	-1	known	silent	c.1185	p.A395	0.074	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,pfam_GLA_domain,superfamily_ConA-like_lec_gl_sf,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Laminin_G,prints_GLA_domain	-	no_errors	GAS6	HGNC	ENSG00000183087				30	0	0	20	6	23.0769
ZMYM5	0	genome.wustl.edu	37	13	20399055	20399055	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	13	20399055	20399055	C	T	SNP	ZMYM5	ENST00000337963	human	ensembl	74_37	-1	known	silent	c.1572	p.T524	1.000	NULL	pfam_Znf_MYM,smart_TRASH_dom	-	no_errors	ZMYM5	HGNC	ENSG00000132950				23	0	0	21	5	19.2308
ZMYM5	0	genome.wustl.edu	37	13	20426142	20426142	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	13	20426142	20426142	A	T	SNP	ZMYM5	ENST00000337963	human	ensembl	74_37	-1	known	missense	c.179	p.V60D	1.000	NULL	pfam_Znf_MYM,smart_TRASH_dom	-	no_errors	ZMYM5	HGNC	ENSG00000132950				90	0	0	95	13	12.037
ZMYM2	0	genome.wustl.edu	37	13	20577064	20577064	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	13	20577064	20577064	G	A	SNP	ZMYM2	ENST00000382869	human	ensembl	74_37	+1	known	missense	c.922	p.A308T	1.000	NULL	pfam_Znf_MYM,pfam_DUF3504,smart_TRASH_dom	-	no_errors	ZMYM2	HGNC	ENSG00000121741				146	0	0	115	31	21.2329
ZMYM2	0	genome.wustl.edu	37	13	20625630	20625630	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	13	20625630	20625630	C	T	SNP	ZMYM2	ENST00000382869	human	ensembl	74_37	+1	known	missense	c.2350	p.R784C	1.000	pfam_Znf_MYM,smart_TRASH_dom	pfam_Znf_MYM,pfam_DUF3504,smart_TRASH_dom	-	no_errors	ZMYM2	HGNC	ENSG00000121741				68	0	0	57	18	24
ZMYM2	0	genome.wustl.edu	37	13	20641139	20641139	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	13	20641139	20641139	T	C	SNP	ZMYM2	ENST00000382869	human	ensembl	74_37	+1	known	missense	c.3281	p.V1094A	0.002	NULL	pfam_Znf_MYM,pfam_DUF3504,smart_TRASH_dom	-	no_errors	ZMYM2	HGNC	ENSG00000121741				66	0	0	75	22	22.6804
SPATA13	0	genome.wustl.edu	37	13	24858406	24858406	+	Silent	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	13	24858406	24858406	T	C	SNP	SPATA13	ENST00000382108	human	ensembl	74_37	+1	known	silent	c.2298	p.N766	0.949	superfamily_SH3_domain	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	SPATA13	HGNC	ENSG00000182957				40	0	0	16	5	23.8095
SPATA13	0	genome.wustl.edu	37	13	24861032	24861032	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	13	24861032	24861032	C	T	SNP	SPATA13	ENST00000382108	human	ensembl	74_37	+1	known	missense	c.2611	p.R871W	1.000	pfam_DH-domain,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	SPATA13	HGNC	ENSG00000182957				86	0	0	45	7	13.4615
PAN3	0	genome.wustl.edu	37	13	28841313	28841313	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	13	28841313	28841313	G	A	SNP	PAN3	ENST00000380958	human	ensembl	74_37	+1	known	missense	c.1655	p.R552H	1.000	superfamily_Kinase-like_dom,pfscan_Prot_kinase_dom	superfamily_Kinase-like_dom,smart_Znf_CCCH,pfscan_Prot_kinase_dom	-	no_errors	PAN3	HGNC	ENSG00000152520				128	0	0	116	20	14.7059
SLC7A1	0	genome.wustl.edu	37	13	30091734	30091734	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	13	30091734	30091734	C	T	SNP	SLC7A1	ENST00000380752	human	ensembl	74_37	-1	known	missense	c.1486	p.V496M	1.000	pirsf_AA/rel_permease1,tigrfam_Cat_AA_permease	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1,tigrfam_Cat_AA_permease	-	no_errors	SLC7A1	HGNC	ENSG00000139514				117	0	0	120	29	19.4631
USPL1	0	genome.wustl.edu	37	13	31205139	31205139	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	13	31205139	31205139	C	T	SNP	USPL1	ENST00000255304	human	ensembl	74_37	+1	known	silent	c.396	p.D132	0.000	NULL	pfscan_Peptidase_C19/C67	-	no_errors	USPL1	HGNC	ENSG00000132952				78	0	0	60	7	10.4478
CCDC169-SOHLH2	0	genome.wustl.edu	37	13	36776105	36776105	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	13	36776105	36776105	C	T	SNP	CCDC169-SOHLH2	ENST00000511166	human	ensembl	74_37	-1	known	silent	c.405	p.A135	0.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	CCDC169-SOHLH2	HGNC	ENSG00000250709				95	0	0	97	6	5.82524
SPG20	0	genome.wustl.edu	37	13	36888477	36888477	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	13	36888477	36888477	C	T	SNP	SPG20	ENST00000355182	human	ensembl	74_37	-1	known	missense	c.1370	p.R457Q	1.000	pfam_Senescence/spartin	pfam_Senescence/spartin,pfam_MIT,smart_MIT	-	no_errors	SPG20	HGNC	ENSG00000133104				99	0	0	75	18	19.3548
POSTN	0	genome.wustl.edu	37	13	38161966	38161966	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	13	38161966	38161966	G	T	SNP	POSTN	ENST00000379747	human	ensembl	74_37	-1	known	missense	c.599	p.P200H	1.000	pfam_FAS1_domain,superfamily_FAS1_domain,smart_FAS1_domain,pirsf_TGFb-ind_bIGH3/osteoblast_fac2,pfscan_FAS1_domain	pfam_FAS1_domain,superfamily_FAS1_domain,smart_FAS1_domain,pirsf_TGFb-ind_bIGH3/osteoblast_fac2,pfscan_EMI_domain,pfscan_FAS1_domain	-	no_errors	POSTN	HGNC	ENSG00000133110				51	0	0	50	6	10.7143
PROSER1	0	genome.wustl.edu	37	13	39588012	39588012	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	13	39588012	39588012	G	A	SNP	PROSER1	ENST00000352251	human	ensembl	74_37	-1	known	silent	c.1377	p.A459	0.000	NULL	NULL	-	no_errors	PROSER1	HGNC	ENSG00000120685				108	0	0	67	17	20.2381
COG6	0	genome.wustl.edu	37	13	40268797	40268797	+	Silent	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	13	40268797	40268797	T	C	SNP	COG6	ENST00000455146	human	ensembl	74_37	+1	known	silent	c.1101	p.A367	0.999	pfam_COG6	pfam_COG6	-	no_errors	COG6	HGNC	ENSG00000133103				73	0	0	58	9	13.4328
ZC3H13	0	genome.wustl.edu	37	13	46549634	46549634	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	13	46549634	46549634	C	T	SNP	ZC3H13	ENST00000242848	human	ensembl	74_37	-1	known	missense	c.2252	p.R751Q	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H13	HGNC	ENSG00000123200				22	0	0	10	7	41.1765
NEK5	0	genome.wustl.edu	37	13	52639603	52639603	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	13	52639603	52639603	G	C	SNP	NEK5	ENST00000355568	human	ensembl	74_37	-1	known	missense	c.2067	p.S689R	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK5	HGNC	ENSG00000197168				108	0	0	69	6	8
UGGT2	0	genome.wustl.edu	37	13	96665657	96665657	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	13	96665657	96665657	G	A	SNP	UGGT2	ENST00000376747	human	ensembl	74_37	-1	known	silent	c.564	p.A188	0.998	NULL	pfam_UDP-g_GGtrans,pfam_Glyco_trans_8	-	no_errors	UGGT2	HGNC	ENSG00000102595				67	0	0	57	7	10.9375
OXGR1	0	genome.wustl.edu	37	13	97639911	97639911	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	13	97639911	97639911	A	G	SNP	OXGR1	ENST00000298440	human	ensembl	74_37	-1	known	missense	c.103	p.Y35H	0.996	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	OXGR1	HGNC	ENSG00000165621				38	0	0	51	5	8.92857
EVL	0	genome.wustl.edu	37	14	100551127	100551127	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	100551127	100551127	A	G	SNP	EVL	ENST00000392920	human	ensembl	74_37	+1	known	missense	c.115	p.N39D	1.000	pfam_WH1/EVH1,smart_WH1/EVH1,pirsf_Vasodilator_phosphoprotein,pfscan_WH1/EVH1	pfam_WH1/EVH1,pfam_VASP_tetra,smart_WH1/EVH1,pirsf_Vasodilator_phosphoprotein,pfscan_WH1/EVH1	-	no_errors	EVL	HGNC	ENSG00000196405				86	0	0	59	23	28.0488
DYNC1H1	0	genome.wustl.edu	37	14	102471206	102471206	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	102471206	102471206	G	A	SNP	DYNC1H1	ENST00000360184	human	ensembl	74_37	+1	known	silent	c.5157	p.E1719	0.999	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like,smart_AAA+_ATPase	-	no_errors	DYNC1H1	HGNC	ENSG00000197102				49	0	0	37	5	11.9048
DYNC1H1	0	genome.wustl.edu	37	14	102494049	102494049	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	102494049	102494049	G	A	SNP	DYNC1H1	ENST00000360184	human	ensembl	74_37	+1	known	missense	c.9142	p.E3048K	1.000	pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like,smart_AAA+_ATPase	-	no_errors	DYNC1H1	HGNC	ENSG00000197102				79	0	0	47	10	17.5439
TECPR2	0	genome.wustl.edu	37	14	102843129	102843129	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	102843129	102843129	C	T	SNP	TECPR2	ENST00000359520	human	ensembl	74_37	+1	known	missense	c.71	p.P24L	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_Beta-propeller_rpt_TECPR,superfamily_WD40_repeat_dom,superfamily_RCC1/BLIP-II,smart_WD40_repeat,smart_Beta-propeller_rpt_TECPR	-	no_errors	TECPR2	HGNC	ENSG00000196663				44	0	0	44	12	21.4286
EIF5	0	genome.wustl.edu	37	14	103806054	103806054	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	103806054	103806054	C	T	SNP	EIF5	ENST00000216554	human	ensembl	74_37	+1	known	missense	c.985	p.L329F	1.000	pfam_W2_domain,superfamily_ARM-type_fold,smart_W2_domain	pfam_Transl_init_fac_IF2/IF5,pfam_W2_domain,superfamily_ARM-type_fold,superfamily_Transl_init_fac_IF2/IF5_N,superfamily_Transl_init_fac_IF2/IF5_Zn-bd,smart_Transl_init_fac_IF2/IF5,smart_W2_domain	-	no_errors	EIF5	HGNC	ENSG00000100664				78	0	0	69	7	9.21053
AHNAK2	0	genome.wustl.edu	37	14	105409290	105409290	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	105409290	105409290	G	A	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	silent	c.12498	p.D4166	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				284	0	0	171	52	23.3184
AHNAK2	0	genome.wustl.edu	37	14	105415997	105415997	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	105415997	105415997	C	T	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	missense	c.5791	p.A1931T	0.346	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				249	1	0.4	159	35	18.0412
TMEM55B	0	genome.wustl.edu	37	14	20928912	20928912	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	20928912	20928912	C	T	SNP	TMEM55B	ENST00000398020	human	ensembl	74_37	-1	known	missense	c.256	p.A86T	1.000	pfam_Transmembrane_protein_55A/B	pfam_Transmembrane_protein_55A/B	-	no_errors	TMEM55B	HGNC	ENSG00000165782				85	0	0	88	14	13.7255
EFS	0	genome.wustl.edu	37	14	23829153	23829153	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	23829153	23829153	C	T	SNP	EFS	ENST00000216733	human	ensembl	74_37	-1	known	silent	c.534	p.P178	0.000	NULL	pfam_CAS_DUF3513,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	EFS	HGNC	ENSG00000100842				62	0	0	41	12	22.6415
MYH7	0	genome.wustl.edu	37	14	23886745	23886745	+	Silent	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	23886745	23886745	T	C	SNP	MYH7	ENST00000355349	human	ensembl	74_37	-1	known	silent	c.4320	p.A1440	0.046	pfam_Myosin_tail,superfamily_Prefoldin	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7	HGNC	ENSG00000092054				96	0	0	64	10	13.5135
AP1G2	0	genome.wustl.edu	37	14	24032638	24032638	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	24032638	24032638	G	A	SNP	AP1G2	ENST00000308724	human	ensembl	74_37	-1	known	missense	c.1361	p.A454V	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP1_complex_gsu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP1_complex_gsu,pfscan_Clathrin_g-adaptin_app	-	no_errors	AP1G2	HGNC	ENSG00000213983				11	0	0	9	3	25
CPNE6	0	genome.wustl.edu	37	14	24542713	24542713	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	24542713	24542713	G	T	SNP	CPNE6	ENST00000537691	human	ensembl	74_37	+1	known	missense	c.339	p.E113D	0.950	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom	pfam_Copine,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,smart_VWF_A,pfscan_C2_dom,pfscan_VWF_A	-	no_errors	CPNE6	HGNC	ENSG00000100884				132	0	0	83	17	17
CPNE6	0	genome.wustl.edu	37	14	24542860	24542860	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	24542860	24542860	C	T	SNP	CPNE6	ENST00000537691	human	ensembl	74_37	+1	known	silent	c.486	p.L162	0.613	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom	pfam_Copine,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,smart_VWF_A,pfscan_C2_dom,pfscan_VWF_A	-	no_errors	CPNE6	HGNC	ENSG00000100884				42	0	0	26	8	23.5294
RNF31	0	genome.wustl.edu	37	14	24621133	24621133	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	24621133	24621133	C	T	SNP	RNF31	ENST00000324103	human	ensembl	74_37	+1	known	missense	c.2062	p.R688W	1.000	NULL	pfam_PUB_domain,pfam_Znf_C6HC,superfamily_UBA-like,superfamily_DEATH-like_dom,superfamily_Znf_FYVE_PHD,smart_Znf_RanBP2,smart_Znf_C6HC,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_RanBP2	-	no_errors	RNF31	HGNC	ENSG00000092098				43	0	0	40	11	21.5686
TGM1	0	genome.wustl.edu	37	14	24731001	24731001	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	24731001	24731001	G	A	SNP	TGM1	ENST00000206765	human	ensembl	74_37	-1	known	silent	c.408	p.Y136	0.888	pfam_Transglutaminase_N,superfamily_Ig_E-set	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM1	HGNC	ENSG00000092295				91	0	0	55	9	14.0625
NFATC4	0	genome.wustl.edu	37	14	24838782	24838782	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	24838782	24838782	G	A	SNP	NFATC4	ENST00000413692	human	ensembl	74_37	+1	known	missense	c.367	p.G123S	1.000	NULL	pfam_RHD,pfam_IPT,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT,pfscan_RHD,prints_NFAT	-	no_errors	NFATC4	HGNC	ENSG00000100968				92	0	0	47	15	24.1935
STRN3	0	genome.wustl.edu	37	14	31364745	31364745	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	31364745	31364745	T	C	SNP	STRN3	ENST00000357479	human	ensembl	74_37	-1	known	missense	c.2266	p.T756A	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Striatin_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	STRN3	HGNC	ENSG00000196792				44	0	0	34	5	12.8205
SSTR1	0	genome.wustl.edu	37	14	38679606	38679606	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	38679606	38679606	C	A	SNP	SSTR1	ENST00000267377	human	ensembl	74_37	+1	known	missense	c.1012	p.L338I	1.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Somatstn_rcpt_1,prints_GPCR_Rhodpsn,prints_Somatstn_rcpt,prints_Opioid_rcpt,prints_NPY_rcpt,prints_Neuropept_B/W_rcpt	-	no_errors	SSTR1	HGNC	ENSG00000139874				106	0	0	78	7	8.23529
GEMIN2	0	genome.wustl.edu	37	14	39601231	39601231	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	39601231	39601231	C	T	SNP	GEMIN2	ENST00000308317	human	ensembl	74_37	+1	known	missense	c.703	p.R235W	1.000	pirsf_GEMIN2_metazoa	pirsf_GEMIN2_metazoa	-	no_errors	GEMIN2	HGNC	ENSG00000092208				111	0	0	78	13	14.2857
FKBP3	0	genome.wustl.edu	37	14	45603570	45603570	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	45603570	45603570	C	A	SNP	FKBP3	ENST00000216330	human	ensembl	74_37	-1	known	missense	c.90	p.Q30H	1.000	NULL	pfam_PPIase_FKBP_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP3	HGNC	ENSG00000100442				81	0	0	43	13	23.2143
NIN	0	genome.wustl.edu	37	14	51208344	51208344	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	51208344	51208344	C	A	SNP	NIN	ENST00000245441	human	ensembl	74_37	-1	known	nonsense	c.5404	p.E1802*	1.000	NULL	superfamily_tRNA-bd_arm,pfscan_EF_hand_dom	-	no_errors	NIN	HGNC	ENSG00000100503				147	0	0	120	38	24.0506
PYGL	0	genome.wustl.edu	37	14	51375597	51375597	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	51375597	51375597	A	G	SNP	PYGL	ENST00000216392	human	ensembl	74_37	-1	known	missense	c.2254	p.S752P	1.000	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	-	no_errors	PYGL	HGNC	ENSG00000100504				128	0	0	116	32	21.6216
NID2	0	genome.wustl.edu	37	14	52534592	52534592	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	52534592	52534592	G	A	SNP	NID2	ENST00000216286	human	ensembl	74_37	-1	known	missense	c.518	p.A173V	0.001	smart_Nidogen_extracell_dom	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd_dom,superfamily_GFP,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EG-like_dom,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID2	HGNC	ENSG00000087303				152	0	0	90	23	20.354
NID2	0	genome.wustl.edu	37	14	52535601	52535601	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	52535601	52535601	G	A	SNP	NID2	ENST00000216286	human	ensembl	74_37	-1	known	missense	c.112	p.P38S	1.000	NULL	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd_dom,superfamily_GFP,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EG-like_dom,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID2	HGNC	ENSG00000087303				47	0	0	29	4	12.1212
PTGDR	0	genome.wustl.edu	37	14	52735263	52735263	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	52735263	52735263	C	T	SNP	PTGDR	ENST00000306051	human	ensembl	74_37	+1	known	missense	c.731	p.A244V	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Pglndn_D_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Pglndn_D_rcpt,prints_Prostanoid_rcpt	-	no_errors	PTGDR	HGNC	ENSG00000168229				49	0	0	28	9	24.3243
DDHD1	0	genome.wustl.edu	37	14	53619158	53619158	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	53619158	53619158	C	T	SNP	DDHD1	ENST00000323669	human	ensembl	74_37	-1	known	missense	c.659	p.G220D	0.881	NULL	pfam_DDHD,pfscan_DDHD	-	no_errors	DDHD1	HGNC	ENSG00000100523				18	0	0	6	4	40
ATG14	0	genome.wustl.edu	37	14	55848756	55848756	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	55848756	55848756	C	T	SNP	ATG14	ENST00000247178	human	ensembl	74_37	-1	known	nonsense	c.801	p.W267*	1.000	pfam_UV_resistance/autophagy_Atg14	pfam_UV_resistance/autophagy_Atg14	-	no_errors	ATG14	HGNC	ENSG00000126775				129	0	0	93	24	20.5128
C14orf37	0	genome.wustl.edu	37	14	58563560	58563560	+	Silent	SNP	G	G	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	58563560	58563560	G	T	SNP	C14orf37	ENST00000267485	human	ensembl	74_37	-1	known	silent	c.1971	p.T657	0.021	NULL	NULL	-	no_errors	C14orf37	HGNC	ENSG00000139971				56	0	0	56	11	16.4179
DACT1	0	genome.wustl.edu	37	14	59108339	59108339	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	59108339	59108339	G	T	SNP	DACT1	ENST00000335867	human	ensembl	74_37	+1	known	nonsense	c.508	p.G170*	0.999	NULL	NULL	-	no_errors	DACT1	HGNC	ENSG00000165617				121	0	0	109	21	16.1538
HSPA2	0	genome.wustl.edu	37	14	65007547	65007547	+	RNA	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	65007547	65007547	G	A	SNP	HSPA2	ENST00000554883	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.008	-	-	-	no_errors	HSPA2	HGNC	ENSG00000126803				35	0	0	33	9	21.4286
PPP1R36	0	genome.wustl.edu	37	14	65053973	65053973	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	65053973	65053973	A	G	SNP	PPP1R36	ENST00000298705	human	ensembl	74_37	+1	known	missense	c.773	p.E258G	1.000	NULL	NULL	-	no_errors	PPP1R36	HGNC	ENSG00000165807				87	0	0	61	15	19.7368
FUT8	0	genome.wustl.edu	37	14	66082939	66082939	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	66082939	66082939	G	A	SNP	FUT8	ENST00000360689	human	ensembl	74_37	+1	known	silent	c.330	p.K110	1.000	pirsf_Alpha1_6FUT_euk	superfamily_SH3_domain,smart_SH3_domain,pirsf_Alpha1_6FUT_euk	-	no_errors	FUT8	HGNC	ENSG00000033170				71	0	0	40	10	20
GPHN	0	genome.wustl.edu	37	14	67431987	67431987	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	67431987	67431987	C	T	SNP	GPHN	ENST00000478722	human	ensembl	74_37	+1	known	missense	c.908	p.S303L	1.000	NULL	pfam_Mopterin-bd_dom,pfam_MoeA_linker/N,pfam_MoeA_C_domain_IV,superfamily_MoeA_linker/N,superfamily_Mopterin-bd_dom,superfamily_MoeA_C_domain_IV,smart_Mopterin-bd_dom,tigrfam_Mo_cofactor_synthesis	-	no_errors	GPHN	HGNC	ENSG00000171723				110	0	0	74	12	13.9535
GPHN	0	genome.wustl.edu	37	14	67576927	67576927	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	67576927	67576927	A	G	SNP	GPHN	ENST00000478722	human	ensembl	74_37	+1	known	missense	c.1364	p.D455G	1.000	pfam_MoeA_linker/N,superfamily_MoeA_linker/N	pfam_Mopterin-bd_dom,pfam_MoeA_linker/N,pfam_MoeA_C_domain_IV,superfamily_MoeA_linker/N,superfamily_Mopterin-bd_dom,superfamily_MoeA_C_domain_IV,smart_Mopterin-bd_dom,tigrfam_Mo_cofactor_synthesis	-	no_errors	GPHN	HGNC	ENSG00000171723				176	0	0	143	32	18.2857
MAP3K9	0	genome.wustl.edu	37	14	71209080	71209080	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	71209080	71209080	T	C	SNP	MAP3K9	ENST00000555993	human	ensembl	74_37	-1	known	missense	c.1555	p.S519G	1.000	pirsf_MAPKKK9/10/11,superfamily_Kinase-like_dom	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,superfamily_Regulat_G_prot_signal_superfam,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_dom	-	no_errors	MAP3K9	HGNC	ENSG00000006432				64	0	0	78	14	15.2174
LTBP2	0	genome.wustl.edu	37	14	75022341	75022341	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	75022341	75022341	G	T	SNP	LTBP2	ENST00000261978	human	ensembl	74_37	-1	known	missense	c.886	p.R296S	0.743	NULL	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	LTBP2	HGNC	ENSG00000119681				35	0	0	36	12	25
VIPAS39	0	genome.wustl.edu	37	14	77895366	77895366	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	77895366	77895366	G	A	SNP	VIPAS39	ENST00000343765	human	ensembl	74_37	-1	known	missense	c.1339	p.H447Y	1.000	pfam_Golgin_subfamily_A_member_5	pfam_Golgin_subfamily_A_member_5	-	no_errors	VIPAS39	HGNC	ENSG00000151445				95	0	0	80	15	15.7895
NRXN3	0	genome.wustl.edu	37	14	79933651	79933651	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	79933651	79933651	G	A	SNP	NRXN3	ENST00000554738	human	ensembl	74_37	+1	known	missense	c.3317	p.R1106H	1.000	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN3	HGNC	ENSG00000021645				81	0	0	53	4	7.01754
SMEK1	0	genome.wustl.edu	37	14	91942843	91942843	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	91942843	91942843	G	A	SNP	SMEK1	ENST00000554943	human	ensembl	74_37	-1	known	missense	c.1019	p.A340V	1.000	pfam_DUF625,superfamily_ARM-type_fold	pfam_DUF625,superfamily_ARM-type_fold	-	no_errors	SMEK1	HGNC	ENSG00000100796				53	0	0	50	11	18.0328
GOLGA5	0	genome.wustl.edu	37	14	93299632	93299632	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	93299632	93299632	G	A	SNP	GOLGA5	ENST00000163416	human	ensembl	74_37	+1	known	missense	c.1885	p.A629T	0.000	pfam_Golgin_subfamily_A_member_5	pfam_Golgin_subfamily_A_member_5,superfamily_Prefoldin	-	no_errors	GOLGA5	HGNC	ENSG00000066455				217	0	0	195	37	15.9483
OTUB2	0	genome.wustl.edu	37	14	94510971	94510971	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	94510971	94510971	G	A	SNP	OTUB2	ENST00000203664	human	ensembl	74_37	+1	known	missense	c.343	p.V115M	0.967	pfam_Peptidase_C65_otubain,pirsf_Ubiquitin_thioesterase_Otubain,pfscan_OTU	pfam_Peptidase_C65_otubain,pirsf_Ubiquitin_thioesterase_Otubain,pfscan_OTU	-	no_errors	OTUB2	HGNC	ENSG00000089723				53	0	0	42	7	14.2857
VRK1	0	genome.wustl.edu	37	14	97326912	97326912	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	97326912	97326912	T	C	SNP	VRK1	ENST00000216639	human	ensembl	74_37	+1	known	missense	c.908	p.M303T	1.000	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	VRK1	HGNC	ENSG00000100749				48	0	0	45	8	15.0943
ADAMTS17	0	genome.wustl.edu	37	15	100821558	100821558	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	15	100821558	100821558	C	T	SNP	ADAMTS17	ENST00000268070	human	ensembl	74_37	-1	known	missense	c.665	p.R222Q	1.000	NULL	pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS17	HGNC	ENSG00000140470				20	0	0	12	3	20
ASB7	0	genome.wustl.edu	37	15	101170100	101170100	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	15	101170100	101170100	A	G	SNP	ASB7	ENST00000332783	human	ensembl	74_37	+1	known	missense	c.670	p.R224G	0.995	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C,prints_Ankyrin_rpt	-	no_errors	ASB7	HGNC	ENSG00000183475				91	0	0	79	20	20.202
LRRK1	0	genome.wustl.edu	37	15	101528988	101528988	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	15	101528988	101528988	C	T	SNP	LRRK1	ENST00000388948	human	ensembl	74_37	+1	known	missense	c.583	p.R195C	0.100	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Leu-rich_rpt,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,superfamily_WD40_repeat_dom,smart_Ankyrin_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_dom	-	no_errors	LRRK1	HGNC	ENSG00000154237				40	0	0	35	5	12.5
MKRN3	0	genome.wustl.edu	37	15	23811639	23811639	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	15	23811639	23811639	T	C	SNP	MKRN3	ENST00000314520	human	ensembl	74_37	+1	known	missense	c.710	p.V237A	0.098	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	MKRN3	HGNC	ENSG00000179455				37	0	0	30	5	14.2857
MAGEL2	0	genome.wustl.edu	37	15	23889460	23889460	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	15	23889460	23889460	G	A	SNP	MAGEL2	ENST00000532292	human	ensembl	74_37	-1	known	missense	c.1621	p.R541W	0.000	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEL2	HGNC	ENSG00000254585				55	0	0	39	10	20.4082
HERC2	0	genome.wustl.edu	37	15	28357109	28357109	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	15	28357109	28357109	G	A	SNP	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	missense	c.14305	p.P4769S	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731				76	0	0	64	12	15.7895
HERC2	0	genome.wustl.edu	37	15	28366563	28366563	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	15	28366563	28366563	G	A	SNP	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	missense	c.13201	p.R4401W	0.985	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731				51	0	0	51	6	10.5263
HERC2	0	genome.wustl.edu	37	15	28538035	28538035	+	Silent	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	15	28538035	28538035	T	C	SNP	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	silent	c.321	p.P107	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731				27	0	0	35	5	12.5
FMN1	0	genome.wustl.edu	37	15	33192305	33192305	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	15	33192305	33192305	C	T	SNP	FMN1	ENST00000334528	human	ensembl	74_37	-1	known	missense	c.2860	p.V954M	1.000	pfam_FH2_Formin,smart_FH2_Formin,prints_Formin_Cappuccino_subfam	pfam_FH2_Formin,smart_FH2_Formin,prints_Formin_Cappuccino_subfam	-	no_errors	FMN1	HGNC	ENSG00000248905				74	0	0	68	16	19.0476
PGBD4	0	genome.wustl.edu	37	15	34396276	34396276	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	15	34396276	34396276	C	T	SNP	PGBD4	ENST00000397766	human	ensembl	74_37	+1	known	missense	c.1544	p.T515I	0.327	NULL	NULL	-	no_errors	PGBD4	HGNC	ENSG00000182405				57	0	0	63	11	14.8649
SPRED1	0	genome.wustl.edu	37	15	38641674	38641674	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	15	38641674	38641674	G	A	SNP	SPRED1	ENST00000299084	human	ensembl	74_37	+1	known	missense	c.634	p.V212I	0.997	NULL	pfam_Sprouty,pfam_WH1/EVH1,smart_WH1/EVH1,pfscan_WH1/EVH1	-	no_errors	SPRED1	HGNC	ENSG00000166068				60	0	0	53	11	17.1875
BAHD1	0	genome.wustl.edu	37	15	40758302	40758302	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	15	40758302	40758302	C	T	SNP	BAHD1	ENST00000416165	human	ensembl	74_37	+1	known	silent	c.2316	p.H772	1.000	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	BAHD1	HGNC	ENSG00000140320				85	0	0	73	12	14.1176
RAD51	0	genome.wustl.edu	37	15	41021004	41021004	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	15	41021004	41021004	C	T	SNP	RAD51	ENST00000382643	human	ensembl	74_37	+1	known	missense	c.629	p.A210V	1.000	pfam_DNA_recomb/repair_Rad51_C,pfam_DNA_recomb/repair_RecA,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pirsf_DNA_recomb/repair_RecA-like,pfscan_DNA_recomb_RecA/RadB_ATP-bd,tigrfam_DNA_recomb/repair_Rad51	pfam_DNA_recomb/repair_Rad51_C,pfam_DNA_recomb/repair_RecA,superfamily_P-loop_NTPase,superfamily_DNA_repair_Rad51/TF_NusA_a-hlx,smart_AAA+_ATPase,pirsf_DNA_recomb/repair_RecA-like,pfscan_DNA_recomb_RecA/RadB_ATP-bd,pfscan_RecA_monomer-monomer_interface,tigrfam_DNA_recomb/repair_Rad51	-	no_errors	RAD51	HGNC	ENSG00000051180				187	0	0	177	14	7.32984
RPAP1	0	genome.wustl.edu	37	15	41820101	41820101	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	15	41820101	41820101	G	A	SNP	RPAP1	ENST00000304330	human	ensembl	74_37	-1	known	missense	c.1385	p.A462V	1.000	superfamily_ARM-type_fold	pfam_RNA_pol_II_AP1_C,pfam_RNA_pol_II_AP1_N,superfamily_ARM-type_fold	-	no_errors	RPAP1	HGNC	ENSG00000103932				46	0	0	27	10	27.027
ZNF106	0	genome.wustl.edu	37	15	42743354	42743354	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	15	42743354	42743354	C	T	SNP	ZNF106	ENST00000263805	human	ensembl	74_37	-1	known	nonsense	c.1047	p.W349*	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_Znf_C2H2-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ZNF106	HGNC	ENSG00000103994				124	0	0	96	21	17.9487
TGM5	0	genome.wustl.edu	37	15	43533132	43533132	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	15	43533132	43533132	C	T	SNP	TGM5	ENST00000220420	human	ensembl	74_37	-1	known	missense	c.919	p.D307N	1.000	pfam_Transglutaminase-like,smart_Transglutaminase-like	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM5	HGNC	ENSG00000104055				88	0	0	80	16	16.6667
TUBGCP4	0	genome.wustl.edu	37	15	43677988	43677988	+	Splice_Site	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	15	43677988	43677988	G	A	SNP	TUBGCP4	ENST00000260383	human	ensembl	74_37	+1	known	splice_site	c.724-1	e8-1	1.000	-	-	-	no_errors	TUBGCP4	HGNC	ENSG00000137822				53	0	0	50	16	24.2424
TP53BP1	0	genome.wustl.edu	37	15	43707815	43707815	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	15	43707815	43707815	C	T	SNP	TP53BP1	ENST00000382044	human	ensembl	74_37	-1	known	missense	c.5066	p.R1689H	1.000	smart_BRCT_dom	pfam_53-BP1_Tudor,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TP53BP1	HGNC	ENSG00000067369				116	0	0	75	16	17.5824
SPG11	0	genome.wustl.edu	37	15	44951445	44951445	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	15	44951445	44951445	A	G	SNP	SPG11	ENST00000261866	human	ensembl	74_37	-1	known	missense	c.499	p.F167L	0.995	NULL	NULL	-	no_errors	SPG11	HGNC	ENSG00000104133				60	0	0	53	16	23.1884
DUOX2	0	genome.wustl.edu	37	15	45387642	45387642	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	15	45387642	45387642	C	T	SNP	DUOX2	ENST00000389039	human	ensembl	74_37	-1	known	missense	c.4232	p.C1411Y	1.000	pfam_Fe_red_NAD-bd_6	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF_hand_dom,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr,prints_Recoverin	-	no_errors	DUOX2	HGNC	ENSG00000140279				128	0	0	73	12	14.1176
SLC28A2	0	genome.wustl.edu	37	15	45556197	45556197	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	15	45556197	45556197	G	A	SNP	SLC28A2	ENST00000347644	human	ensembl	74_37	+1	known	missense	c.565	p.A189T	1.000	pfam_Nuclsd_transpt2,tigrfam_C_nuclsd_transpt_met_bac	pfam_Nucleos_tra2_C,pfam_Nuclsd_transpt2,pfam_Nucleoside_recog_Gate,tigrfam_C_nuclsd_transpt_met_bac	-	no_errors	SLC28A2	HGNC	ENSG00000137860				73	0	0	64	14	17.9487
HDC	0	genome.wustl.edu	37	15	50534934	50534934	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	15	50534934	50534934	C	T	SNP	HDC	ENST00000267845	human	ensembl	74_37	-1	known	silent	c.1512	p.T504	0.000	NULL	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase,prints_Aromatic_deC	-	no_errors	HDC	HGNC	ENSG00000140287				70	0	0	40	21	34.4262
TRPM7	0	genome.wustl.edu	37	15	50878623	50878623	+	Silent	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	15	50878623	50878623	A	G	SNP	TRPM7	ENST00000313478	human	ensembl	74_37	-1	known	silent	c.4452	p.C1484	0.961	NULL	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM7	HGNC	ENSG00000092439				58	0	0	38	9	19.1489
VPS13C	0	genome.wustl.edu	37	15	62147068	62147068	+	Splice_Site	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	15	62147068	62147068	A	G	SNP	VPS13C	ENST00000261517	human	ensembl	74_37	-1	known	splice_site	c.11160+2	e84+2	0.968	-	-	-	no_errors	VPS13C	HGNC	ENSG00000129003				29	0	0	23	3	11.5385
TLN2	0	genome.wustl.edu	37	15	63063176	63063176	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	15	63063176	63063176	C	T	SNP	TLN2	ENST00000306829	human	ensembl	74_37	+1	known	missense	c.5210	p.A1737V	0.997	superfamily_Vinculin/catenin	pfam_Talin_cent,pfam_ILWEQ_dom,pfam_Vinculin-bd_dom,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ_dom,pfscan_FERM_domain,pfscan_ILWEQ_dom	-	no_errors	TLN2	HGNC	ENSG00000171914				98	0	0	55	14	20.2899
TLN2	0	genome.wustl.edu	37	15	63089567	63089567	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	15	63089567	63089567	C	T	SNP	TLN2	ENST00000306829	human	ensembl	74_37	+1	known	missense	c.6200	p.A2067V	1.000	superfamily_Vinculin/catenin	pfam_Talin_cent,pfam_ILWEQ_dom,pfam_Vinculin-bd_dom,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ_dom,pfscan_FERM_domain,pfscan_ILWEQ_dom	-	no_errors	TLN2	HGNC	ENSG00000171914				25	0	0	38	6	13.6364
USP3	0	genome.wustl.edu	37	15	63824853	63824853	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	15	63824853	63824853	G	A	SNP	USP3	ENST00000380324	human	ensembl	74_37	+1	known	silent	c.99	p.R33	0.999	pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP	pfam_Peptidase_C19/C67,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP3	HGNC	ENSG00000140455				84	0	0	61	10	14.0845
HERC1	0	genome.wustl.edu	37	15	63904654	63904654	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	15	63904654	63904654	C	A	SNP	HERC1	ENST00000443617	human	ensembl	74_37	-1	known	missense	c.14196	p.E4732D	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657				71	0	0	58	11	15.942
HERC1	0	genome.wustl.edu	37	15	64067377	64067377	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	15	64067377	64067377	C	T	SNP	HERC1	ENST00000443617	human	ensembl	74_37	-1	known	missense	c.446	p.R149H	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657				225	0	0	190	33	14.7982
SLC24A1	0	genome.wustl.edu	37	15	65945038	65945038	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	15	65945038	65945038	G	A	SNP	SLC24A1	ENST00000261892	human	ensembl	74_37	+1	known	missense	c.2942	p.G981D	1.000	pfam_NaCa_Exmemb,tigrfam_K/Na/Ca-exchanger	pfam_NaCa_Exmemb,tigrfam_K-dep_Na/Ca-exchanger,tigrfam_K/Na/Ca-exchanger	-	no_errors	SLC24A1	HGNC	ENSG00000074621				72	0	0	61	16	20.7792
ITGA11	0	genome.wustl.edu	37	15	68661610	68661610	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	15	68661610	68661610	G	A	SNP	ITGA11	ENST00000315757	human	ensembl	74_37	-1	known	silent	c.177	p.G59	0.533	smart_Int_alpha_beta-p	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA11	HGNC	ENSG00000137809				75	0	0	43	12	21.8182
ODF3L1	0	genome.wustl.edu	37	15	76019571	76019571	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	15	76019571	76019571	C	A	SNP	ODF3L1	ENST00000332145	human	ensembl	74_37	+1	known	missense	c.515	p.P172H	0.952	NULL	pfam_SHIPPO-rpt	-	no_errors	ODF3L1	HGNC	ENSG00000182950				76	0	0	65	17	20.7317
CIB2	0	genome.wustl.edu	37	15	78398176	78398176	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	15	78398176	78398176	G	A	SNP	CIB2	ENST00000258930	human	ensembl	74_37	-1	known	silent	c.447	p.C149	0.786	smart_EF_hand_dom,pfscan_EF_hand_dom	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	CIB2	HGNC	ENSG00000136425				63	0	0	43	16	27.1186
HYKK	0	genome.wustl.edu	37	15	78807371	78807371	+	Silent	SNP	C	C	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	15	78807371	78807371	C	A	SNP	HYKK	ENST00000388988	human	ensembl	74_37	+1	known	silent	c.399	p.P133	0.002	pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom	pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom	-	no_errors	HYKK	HGNC	ENSG00000188266				48	0	0	39	15	27.7778
ARNT2	0	genome.wustl.edu	37	15	80872883	80872883	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	15	80872883	80872883	C	T	SNP	ARNT2	ENST00000303329	human	ensembl	74_37	+1	known	missense	c.1745	p.P582L	0.946	NULL	pfam_PAS_fold_3,pfam_PAS_fold,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,pfscan_PAS,pfscan_bHLH_dom,prints_Nuc_translocat,tigrfam_PAS	-	no_errors	ARNT2	HGNC	ENSG00000172379				34	0	0	37	5	11.9048
FSD2	0	genome.wustl.edu	37	15	83451613	83451613	+	Silent	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	15	83451613	83451613	A	G	SNP	FSD2	ENST00000334574	human	ensembl	74_37	-1	known	silent	c.900	p.D300	0.648	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,prints_Butyrophylin	-	no_errors	FSD2	HGNC	ENSG00000186628				233	0	0	213	53	19.9248
ZNF592	0	genome.wustl.edu	37	15	85327240	85327240	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	15	85327240	85327240	C	G	SNP	ZNF592	ENST00000299927	human	ensembl	74_37	+1	known	missense	c.1334	p.A445G	0.083	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF592	HGNC	ENSG00000166716				45	0	0	35	9	20.4545
ABHD2	0	genome.wustl.edu	37	15	89738497	89738497	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	15	89738497	89738497	G	T	SNP	ABHD2	ENST00000352732	human	ensembl	74_37	+1	known	missense	c.1121	p.G374V	1.000	pfam_AB_hydrolase_1,pirsf_AB-Hydro_YheT	pfam_AB_hydrolase_1,pirsf_AB-Hydro_YheT	-	no_errors	ABHD2	HGNC	ENSG00000140526				73	0	0	57	8	12.3077
TICRR	0	genome.wustl.edu	37	15	90167247	90167247	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	15	90167247	90167247	C	T	SNP	TICRR	ENST00000268138	human	ensembl	74_37	+1	known	missense	c.3706	p.P1236S	0.005	NULL	NULL	-	no_errors	TICRR	HGNC	ENSG00000140534				166	0	0	139	13	8.55263
BLM	0	genome.wustl.edu	37	15	91295078	91295078	+	Silent	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	15	91295078	91295078	A	G	SNP	BLM	ENST00000355112	human	ensembl	74_37	+1	known	silent	c.861	p.P287	0.000	NULL	pfam_RQC_domain,pfam_BDHCT,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_HRDC_dom,superfamily_P-loop_NTPase,superfamily_HRDC-like,smart_Helicase_ATP-bd,smart_Helicase_C,smart_RQC_domain,smart_HRDC_dom,pfscan_HRDC_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	BLM	HGNC	ENSG00000197299				87	0	0	64	17	20.9877
TEKT5	0	genome.wustl.edu	37	16	10788514	10788514	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	10788514	10788514	G	A	SNP	TEKT5	ENST00000283025	human	ensembl	74_37	-1	known	missense	c.217	p.R73W	0.986	NULL	pfam_Tektin,prints_Tektin	-	no_errors	TEKT5	HGNC	ENSG00000153060				56	0	0	55	7	11.2903
CIITA	0	genome.wustl.edu	37	16	11000846	11000846	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	11000846	11000846	C	T	SNP	CIITA	ENST00000324288	human	ensembl	74_37	+1	known	silent	c.1497	p.D499	0.194	superfamily_P-loop_NTPase,pfscan_NACHT_NTPase,prints_MHC_II_transact	superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,prints_MHC_II_transact	-	no_errors	CIITA	HGNC	ENSG00000179583				93	0	0	56	10	15.1515
RHBDF1	0	genome.wustl.edu	37	16	113713	113713	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	113713	113713	G	A	SNP	RHBDF1	ENST00000262316	human	ensembl	74_37	-1	known	missense	c.334	p.R112C	1.000	pfam_Rhomboid_SP	pfam_Rhomboid_SP,pfam_Peptidase_S54_rhomboid_dom	-	no_errors	RHBDF1	HGNC	ENSG00000007384				31	0	0	11	8	42.1053
CACNA1H	0	genome.wustl.edu	37	16	1250513	1250513	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	1250513	1250513	C	T	SNP	CACNA1H	ENST00000348261	human	ensembl	74_37	+1	known	missense	c.1061	p.P354L	0.999	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_PKD_2	-	no_errors	CACNA1H	HGNC	ENSG00000196557				41	0	0	31	8	20.5128
CACNA1H	0	genome.wustl.edu	37	16	1262117	1262117	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	1262117	1262117	C	T	SNP	CACNA1H	ENST00000348261	human	ensembl	74_37	+1	known	missense	c.4738	p.R1580C	0.981	prints_VDCC_T_a1su	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_PKD_2	-	no_errors	CACNA1H	HGNC	ENSG00000196557				40	0	0	21	6	22.2222
PDXDC1	0	genome.wustl.edu	37	16	15112747	15112747	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	15112747	15112747	C	T	SNP	PDXDC1	ENST00000396410	human	ensembl	74_37	+1	known	silent	c.1014	p.A338	1.000	superfamily_PyrdxlP-dep_Trfase	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase	-	no_errors	PDXDC1	HGNC	ENSG00000179889				113	0	0	107	6	5.30973
TMC5	0	genome.wustl.edu	37	16	19451526	19451526	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	19451526	19451526	T	G	SNP	TMC5	ENST00000396229	human	ensembl	74_37	+1	known	missense	c.166	p.S56A	0.006	NULL	pfam_TMC	-	no_errors	TMC5	HGNC	ENSG00000103534				115	0	0	78	24	23.5294
TMC5	0	genome.wustl.edu	37	16	19498632	19498632	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	19498632	19498632	G	A	SNP	TMC5	ENST00000396229	human	ensembl	74_37	+1	known	missense	c.2557	p.A853T	1.000	NULL	pfam_TMC	-	no_errors	TMC5	HGNC	ENSG00000103534				33	0	0	26	9	25.7143
GPR139	0	genome.wustl.edu	37	16	20043576	20043576	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	20043576	20043576	G	A	SNP	GPR139	ENST00000570682	human	ensembl	74_37	-1	known	silent	c.543	p.H181	0.941	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	GPR139	HGNC	ENSG00000180269				59	0	0	50	20	28.5714
OTOA	0	genome.wustl.edu	37	16	21739665	21739665	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	21739665	21739665	C	T	SNP	OTOA	ENST00000286149	human	ensembl	74_37	+1	known	missense	c.2162	p.A721V	0.989	NULL	NULL	-	no_errors	OTOA	HGNC	ENSG00000155719				65	0	0	44	13	22.807
VWA3A	0	genome.wustl.edu	37	16	22163922	22163922	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	22163922	22163922	C	T	SNP	VWA3A	ENST00000389398	human	ensembl	74_37	+1	known	silent	c.3372	p.H1124	0.000	smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA3A	HGNC	ENSG00000175267				22	0	0	20	4	16.6667
E4F1	0	genome.wustl.edu	37	16	2282576	2282576	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	2282576	2282576	G	A	SNP	E4F1	ENST00000301727	human	ensembl	74_37	+1	known	silent	c.729	p.T243	0.029	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	E4F1	HGNC	ENSG00000167967				12	0	0	8	3	27.2727
ABCA3	0	genome.wustl.edu	37	16	2333210	2333210	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	2333210	2333210	C	T	SNP	ABCA3	ENST00000301732	human	ensembl	74_37	-1	known	missense	c.4012	p.A1338T	0.285	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA3	HGNC	ENSG00000167972				18	0	0	12	3	20
SCNN1B	0	genome.wustl.edu	37	16	23382745	23382745	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	23382745	23382745	G	A	SNP	SCNN1B	ENST00000307331	human	ensembl	74_37	+1	known	missense	c.1141	p.A381T	0.998	pfam_Na+channel_ASC,tigrfam_EnaC	pfam_Na+channel_ASC,prints_Na+channel_ASC,tigrfam_EnaC	-	no_errors	SCNN1B	HGNC	ENSG00000168447				45	0	0	18	8	30.7692
ARHGAP17	0	genome.wustl.edu	37	16	24946893	24946893	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	24946893	24946893	C	T	SNP	ARHGAP17	ENST00000289968	human	ensembl	74_37	-1	known	missense	c.1792	p.A598T	0.005	NULL	pfam_BAR_dom,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_BAR_dom,smart_RhoGAP_dom,pfscan_BAR_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP17	HGNC	ENSG00000140750				44	0	0	36	5	12.1951
GTF3C1	0	genome.wustl.edu	37	16	27481632	27481632	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	27481632	27481632	G	A	SNP	GTF3C1	ENST00000356183	human	ensembl	74_37	-1	known	silent	c.4611	p.D1537	1.000	NULL	pfam_TFIIIC_Bblock-bd	-	no_errors	GTF3C1	HGNC	ENSG00000077235				199	0	0	141	30	17.5439
KIAA0556	0	genome.wustl.edu	37	16	27585252	27585252	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	27585252	27585252	G	A	SNP	KIAA0556	ENST00000261588	human	ensembl	74_37	+1	known	nonsense	c.38	p.W13*	1.000	NULL	superfamily_Thaumatin	-	no_errors	KIAA0556	HGNC	ENSG00000047578				60	0	0	49	9	15.5172
PRSS27	0	genome.wustl.edu	37	16	2764112	2764112	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	2764112	2764112	C	T	SNP	PRSS27	ENST00000302641	human	ensembl	74_37	-1	known	silent	c.462	p.T154	0.004	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	PRSS27	HGNC	ENSG00000172382				86	0	0	55	19	25.6757
SRRM2	0	genome.wustl.edu	37	16	2812472	2812472	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	2812472	2812472	G	A	SNP	SRRM2	ENST00000301740	human	ensembl	74_37	+1	known	missense	c.1943	p.R648H	0.998	NULL	pfam_mRNA_splic_Cwf21	-	no_errors	SRRM2	HGNC	ENSG00000167978				87	0	0	59	16	21.3333
CORO1A	0	genome.wustl.edu	37	16	30199821	30199821	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	30199821	30199821	G	A	SNP	CORO1A	ENST00000219150	human	ensembl	74_37	+1	known	missense	c.1205	p.R402Q	1.000	NULL	pfam_DUF1900,pfam_DUF1899,pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO1A	HGNC	ENSG00000102879				21	0	0	13	5	27.7778
ZNF646	0	genome.wustl.edu	37	16	31089288	31089288	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	31089288	31089288	C	T	SNP	ZNF646	ENST00000300850	human	ensembl	74_37	+1	known	missense	c.1643	p.P548L	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF646	HGNC	ENSG00000167395				34	0	0	33	5	13.1579
PRSS36	0	genome.wustl.edu	37	16	31154679	31154679	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	31154679	31154679	C	T	SNP	PRSS36	ENST00000268281	human	ensembl	74_37	-1	known	missense	c.1084	p.A362T	1.000	pirsf_Pept_S1A_polyserase-2,pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pirsf_Pept_S1A_polyserase-2,pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Peptidase_S1	-	no_errors	PRSS36	HGNC	ENSG00000178226				55	0	0	30	6	16.6667
ITGAX	0	genome.wustl.edu	37	16	31371370	31371370	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	31371370	31371370	G	A	SNP	ITGAX	ENST00000268296	human	ensembl	74_37	+1	known	missense	c.691	p.A231T	0.992	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGAX	HGNC	ENSG00000140678				87	0	0	64	12	15.7895
C16orf90	0	genome.wustl.edu	37	16	3544554	3544554	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	3544554	3544554	G	A	SNP	C16orf90	ENST00000437192	human	ensembl	74_37	-1	known	nonsense	c.370	p.R124*	0.911	NULL	NULL	-	no_errors	C16orf90	HGNC	ENSG00000215131				28	0	0	14	11	44
SLX4	0	genome.wustl.edu	37	16	3632513	3632513	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	3632513	3632513	G	A	SNP	SLX4	ENST00000294008	human	ensembl	74_37	-1	known	missense	c.5335	p.R1779W	0.967	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	SLX4	HGNC	ENSG00000188827				90	0	0	67	11	14.1026
CREBBP	0	genome.wustl.edu	37	16	3900561	3900561	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	3900561	3900561	C	T	SNP	CREBBP	ENST00000262367	human	ensembl	74_37	-1	known	missense	c.535	p.A179T	1.000	NULL	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CREBBP	HGNC	ENSG00000005339				57	0	0	45	10	18.1818
ADCY9	0	genome.wustl.edu	37	16	4016953	4016953	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	4016953	4016953	G	A	SNP	ADCY9	ENST00000294016	human	ensembl	74_37	-1	known	missense	c.2885	p.P962L	0.015	NULL	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY9	HGNC	ENSG00000162104				39	0	0	31	5	13.8889
TMEM8A	0	genome.wustl.edu	37	16	426713	426713	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	426713	426713	C	T	SNP	TMEM8A	ENST00000431232	human	ensembl	74_37	-1	known	silent	c.735	p.P245	0.000	NULL	pfam_DUF3522,pfscan_EG-like_dom	-	no_errors	TMEM8A	HGNC	ENSG00000129925				12	0	0	6	2	25
VASN	0	genome.wustl.edu	37	16	4432050	4432050	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	4432050	4432050	G	A	SNP	VASN	ENST00000304735	human	ensembl	74_37	+1	known	missense	c.1172	p.S391N	0.001	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	VASN	HGNC	ENSG00000168140				10	0	0	5	6	54.5455
TOX3	0	genome.wustl.edu	37	16	52473718	52473718	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	52473718	52473718	C	T	SNP	TOX3	ENST00000219746	human	ensembl	74_37	-1	known	missense	c.1150	p.A384T	1.000	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	TOX3	HGNC	ENSG00000103460				236	0	0	165	44	21.0526
MMP2	0	genome.wustl.edu	37	16	55518003	55518003	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	55518003	55518003	C	T	SNP	MMP2	ENST00000219070	human	ensembl	74_37	+1	known	silent	c.456	p.S152	0.997	pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo,prints_Pept_M10A	pfam_Pept_M10_metallopeptidase,pfam_FN_type2_col-bd,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Kringle-like,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_FN_type2_col-bd,smart_Hemopexin-like_repeat,pfscan_FN_type2_col-bd,prints_Pept_M10A	-	no_errors	MMP2	HGNC	ENSG00000087245				87	0	0	43	19	30.6452
BBS2	0	genome.wustl.edu	37	16	56532528	56532528	+	RNA	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	56532528	56532528	G	A	SNP	BBS2	ENST00000566410	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.122	-	-	-	no_errors	BBS2	HGNC	ENSG00000125124				53	0	0	36	6	14.2857
MT3	0	genome.wustl.edu	37	16	56623933	56623933	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	56623933	56623933	C	T	SNP	MT3	ENST00000570176	human	ensembl	74_37	+1	putative	silent	c.183	p.S61	0.000	NULL	pfam_Metalthion_sfam_euk,superfamily_Metalthion_dom	-	no_errors	MT3	HGNC	ENSG00000087250				11	0	0	13	4	23.5294
MMP15	0	genome.wustl.edu	37	16	58077494	58077494	+	Silent	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	58077494	58077494	T	C	SNP	MMP15	ENST00000219271	human	ensembl	74_37	+1	known	silent	c.1533	p.P511	0.000	pirsf_Pept_M10A_Metazoans,pfam_Hemopexin-like_repeat,superfamily_Hemopexin-like_dom,smart_Hemopexin-like_repeat	pirsf_Pept_M10A_Metazoans,pfam_Hemopexin-like_repeat,pfam_Pept_M10_metallopeptidase,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP15	HGNC	ENSG00000102996				20	0	0	17	3	15
CDH11	0	genome.wustl.edu	37	16	64984769	64984769	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	64984769	64984769	C	T	SNP	CDH11	ENST00000268603	human	ensembl	74_37	-1	known	missense	c.1795	p.G599R	0.960	smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH11	HGNC	ENSG00000140937				60	0	0	35	10	22.2222
CDH16	0	genome.wustl.edu	37	16	66947046	66947046	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	66947046	66947046	G	A	SNP	CDH16	ENST00000299752	human	ensembl	74_37	-1	known	missense	c.1042	p.L348F	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH16	HGNC	ENSG00000166589				164	1	0.606061	120	27	18.3673
AGRP	0	genome.wustl.edu	37	16	67516943	67516943	+	Silent	SNP	A	A	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	67516943	67516943	A	C	SNP	AGRP	ENST00000290953	human	ensembl	74_37	-1	known	silent	c.201	p.A67	0.000	pfam_Agouti,smart_Agouti	pfam_Agouti,superfamily_Agouti_dom,smart_Agouti,pfscan_Agouti_dom	-	no_errors	AGRP	HGNC	ENSG00000159723				117	1	0.847458	85	24	22.0183
ACD	0	genome.wustl.edu	37	16	67691889	67691889	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	67691889	67691889	C	A	SNP	ACD	ENST00000393919	human	ensembl	74_37	-1	known	missense	c.1464	p.W488C	1.000	NULL	NULL	-	no_errors	ACD	HGNC	ENSG00000102977				46	0	0	32	7	17.9487
TSNAXIP1	0	genome.wustl.edu	37	16	67860079	67860079	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	67860079	67860079	G	A	SNP	TSNAXIP1	ENST00000388833	human	ensembl	74_37	+1	known	missense	c.1007	p.R336H	1.000	NULL	NULL	-	no_errors	TSNAXIP1	HGNC	ENSG00000102904				29	0	0	8	6	42.8571
DPEP2	0	genome.wustl.edu	37	16	68026860	68026860	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	68026860	68026860	C	T	SNP	DPEP2	ENST00000393847	human	ensembl	74_37	-1	known	missense	c.256	p.V86M	0.806	pfam_Peptidase_M19	pfam_Peptidase_M19	-	no_errors	DPEP2	HGNC	ENSG00000167261				20	0	0	8	4	33.3333
HAS3	0	genome.wustl.edu	37	16	69143549	69143549	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	69143549	69143549	G	A	SNP	HAS3	ENST00000306560	human	ensembl	74_37	+1	known	missense	c.251	p.R84Q	0.037	NULL	pfam_Chitin_synth_fng,pfam_Glyco_trans_2	-	no_errors	HAS3	HGNC	ENSG00000103044				21	0	0	21	3	12.5
WWP2	0	genome.wustl.edu	37	16	69964118	69964118	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	69964118	69964118	C	T	SNP	WWP2	ENST00000356003	human	ensembl	74_37	+1	known	missense	c.1402	p.R468C	1.000	pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	pfam_HECT,pfam_WW_dom,superfamily_HECT,superfamily_C2_dom,superfamily_WW_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_WW_dom	-	no_errors	WWP2	HGNC	ENSG00000198373				41	0	0	32	12	27.2727
ZFHX3	0	genome.wustl.edu	37	16	72828552	72828552	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	72828552	72828552	C	T	SNP	ZFHX3	ENST00000268489	human	ensembl	74_37	-1	known	missense	c.8029	p.E2677K	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836				226	0	0	182	34	15.7407
GLG1	0	genome.wustl.edu	37	16	74496466	74496466	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	74496466	74496466	C	T	SNP	GLG1	ENST00000205061	human	ensembl	74_37	-1	known	missense	c.2854	p.G952S	0.605	pfam_Cys-rich_GLG1_repeat	pfam_Cys-rich_GLG1_repeat	-	no_errors	GLG1	HGNC	ENSG00000090863				78	0	0	60	20	25
MLKL	0	genome.wustl.edu	37	16	74729299	74729299	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	74729299	74729299	C	T	SNP	MLKL	ENST00000308807	human	ensembl	74_37	-1	known	silent	c.357	p.E119	0.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MLKL	HGNC	ENSG00000168404				107	0	0	82	16	16.3265
CNTNAP4	0	genome.wustl.edu	37	16	76587778	76587778	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	76587778	76587778	T	C	SNP	CNTNAP4	ENST00000307431	human	ensembl	74_37	+1	known	missense	c.3704	p.I1235T	1.000	NULL	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP4	HGNC	ENSG00000152910				45	0	0	35	8	18.6047
ADAMTS18	0	genome.wustl.edu	37	16	77356319	77356319	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	77356319	77356319	A	T	SNP	ADAMTS18	ENST00000282849	human	ensembl	74_37	-1	known	missense	c.2077	p.F693I	1.000	NULL	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS18	HGNC	ENSG00000140873				127	0	0	93	15	13.8889
BCMO1	0	genome.wustl.edu	37	16	81320986	81320986	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	81320986	81320986	G	A	SNP	BCMO1	ENST00000258168	human	ensembl	74_37	+1	known	silent	c.1389	p.A463	0.000	pfam_Carotenoid_Oase	pfam_Carotenoid_Oase	-	no_errors	BCMO1	HGNC	ENSG00000135697				65	0	0	38	12	24
CDH13	0	genome.wustl.edu	37	16	83065685	83065685	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	83065685	83065685	C	T	SNP	CDH13	ENST00000566620	human	ensembl	74_37	+1	known	silent	c.228	p.N76	0.107	pfam_Cadherin_pro_dom,superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH13	HGNC	ENSG00000140945				23	0	0	27	9	25
ZC3H18	0	genome.wustl.edu	37	16	88694379	88694379	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	88694379	88694379	C	T	SNP	ZC3H18	ENST00000301011	human	ensembl	74_37	+1	known	missense	c.2321	p.S774L	0.002	NULL	smart_Znf_CCCH	-	no_errors	ZC3H18	HGNC	ENSG00000158545				109	0	0	64	19	22.8916
APRT	0	genome.wustl.edu	37	16	88876887	88876887	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	88876887	88876887	G	A	SNP	APRT	ENST00000378364	human	ensembl	74_37	-1	known	missense	c.265	p.R89W	0.041	pfam_PRibTrfase_dom,tigrfam_Ade_phspho_trans	pfam_PRibTrfase_dom,tigrfam_Ade_phspho_trans	-	no_errors	APRT	HGNC	ENSG00000198931				12	0	0	17	5	22.7273
SPG7	0	genome.wustl.edu	37	16	89614458	89614458	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	89614458	89614458	C	T	SNP	SPG7	ENST00000268704	human	ensembl	74_37	+1	known	missense	c.1600	p.R534W	0.103	superfamily_P-loop_NTPase,tigrfam_FtsH	pfam_Peptidase_M41,pfam_ATPase_AAA_core,pfam_Pept_M41_FtsH_extracell,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_FtsH	-	no_errors	SPG7	HGNC	ENSG00000197912				94	0	0	58	24	29.2683
CENPBD1	0	genome.wustl.edu	37	16	90038269	90038269	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	90038269	90038269	G	A	SNP	CENPBD1	ENST00000314994	human	ensembl	74_37	-1	known	missense	c.62	p.A21V	0.323	pfam_HTH_Psq,superfamily_Homeodomain-like,pfscan_HTH_Psq	pfam_HTH_CenpB_DNA-bd_dom,pfam_HTH_Psq,superfamily_Homeodomain-like,pfscan_HTH_Psq	-	no_errors	CENPBD1	HGNC	ENSG00000177946				51	0	0	39	9	18.75
GRIN2A	0	genome.wustl.edu	37	16	9857426	9857426	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	9857426	9857426	G	A	SNP	GRIN2A	ENST00000330684	human	ensembl	74_37	-1	known	silent	c.3975	p.Y1325	0.415	pfam_NMDAR2_C	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2A	HGNC	ENSG00000183454				88	0	0	71	12	14.4578
MYH13	0	genome.wustl.edu	37	17	10231407	10231407	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	10231407	10231407	G	T	SNP	MYH13	ENST00000252172	human	ensembl	74_37	-1	known	missense	c.2467	p.R823S	1.000	superfamily_P-loop_NTPase	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH13	HGNC	ENSG00000006788				87	0	0	65	9	12.1622
MYH3	0	genome.wustl.edu	37	17	10542988	10542988	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	10542988	10542988	C	T	SNP	MYH3	ENST00000226209	human	ensembl	74_37	-1	known	silent	c.2814	p.T938	0.858	NULL	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH3	HGNC	ENSG00000109063				262	1	0.380228	210	47	18.2879
DNAH9	0	genome.wustl.edu	37	17	11778363	11778363	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	11778363	11778363	G	A	SNP	DNAH9	ENST00000262442	human	ensembl	74_37	+1	known	missense	c.10340	p.R3447H	1.000	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174				56	0	0	55	17	23.6111
DNAH9	0	genome.wustl.edu	37	17	11806149	11806149	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	11806149	11806149	G	T	SNP	DNAH9	ENST00000262442	human	ensembl	74_37	+1	known	missense	c.11520	p.Q3840H	1.000	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174				71	0	0	58	12	17.1429
MYOCD	0	genome.wustl.edu	37	17	12661453	12661453	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	12661453	12661453	T	C	SNP	MYOCD	ENST00000425538	human	ensembl	74_37	+1	known	missense	c.2254	p.S752P	1.000	NULL	pfam_RPEL_repeat,pfam_SAP_dom,smart_RPEL_repeat,smart_SAP_dom,pfscan_RPEL_repeat,pfscan_SAP_dom	-	no_errors	MYOCD	HGNC	ENSG00000141052				77	0	0	68	10	12.8205
SLC43A2	0	genome.wustl.edu	37	17	1520058	1520058	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	1520058	1520058	C	T	SNP	SLC43A2	ENST00000382147	human	ensembl	74_37	-1	known	missense	c.166	p.V56I	0.440	superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC43A2	HGNC	ENSG00000167703				39	0	0	28	8	22.2222
TVP23C	0	genome.wustl.edu	37	17	15441469	15441469	+	Splice_Site	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	15441469	15441469	C	T	SNP	TVP23C	ENST00000523573	human	ensembl	74_37	-1	known	splice_site	c.162-2	e5-2	0.998	-	-	-	no_errors	TVP23C	HGNC	ENSG00000175106				73	0	0	99	26	20.8
WDR81	0	genome.wustl.edu	37	17	1640830	1640830	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	1640830	1640830	G	A	SNP	WDR81	ENST00000409644	human	ensembl	74_37	+1	known	missense	c.5677	p.V1893I	0.984	superfamily_WD40_repeat_dom	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Kinase-like_dom,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR81	HGNC	ENSG00000167716				58	0	0	30	8	21.0526
SERPINF1	0	genome.wustl.edu	37	17	1679914	1679914	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	1679914	1679914	G	A	SNP	SERPINF1	ENST00000254722	human	ensembl	74_37	+1	known	missense	c.875	p.S292N	1.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINF1	HGNC	ENSG00000132386				127	0	0	120	19	13.6691
RAI1	0	genome.wustl.edu	37	17	17698482	17698482	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	17698482	17698482	C	T	SNP	RAI1	ENST00000353383	human	ensembl	74_37	+1	known	silent	c.2220	p.S740	0.013	NULL	smart_Znf_PHD	-	no_errors	RAI1	HGNC	ENSG00000108557				55	0	0	57	13	18.5714
SREBF1	0	genome.wustl.edu	37	17	17720322	17720322	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	17720322	17720322	C	T	SNP	SREBF1	ENST00000355815	human	ensembl	74_37	-1	known	missense	c.1825	p.A609T	0.986	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	SREBF1	HGNC	ENSG00000072310				58	0	0	32	8	20
TOM1L2	0	genome.wustl.edu	37	17	17766046	17766046	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	17766046	17766046	T	C	SNP	TOM1L2	ENST00000379504	human	ensembl	74_37	-1	known	missense	c.1201	p.T401A	1.000	pirsf_TOM1	pfam_VHS,pfam_GAT,superfamily_ENTH_VHS,smart_VHS_subgr,pirsf_TOM1,pfscan_GAT,pfscan_VHS	-	no_errors	TOM1L2	HGNC	ENSG00000175662				253	0	0	211	52	19.7719
SLC5A10	0	genome.wustl.edu	37	17	18874437	18874437	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	18874437	18874437	A	T	SNP	SLC5A10	ENST00000395647	human	ensembl	74_37	+1	known	missense	c.752	p.H251L	1.000	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A10	HGNC	ENSG00000154025				45	0	0	27	8	22.8571
ALDH3A2	0	genome.wustl.edu	37	17	19568354	19568354	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	19568354	19568354	G	T	SNP	ALDH3A2	ENST00000339618	human	ensembl	74_37	+1	known	nonsense	c.1201	p.G401*	1.000	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH_NAD(P)	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH_NAD(P)	-	no_errors	ALDH3A2	HGNC	ENSG00000072210				55	0	0	56	16	22.2222
KRT16P3	0	genome.wustl.edu	37	17	20407328	20407328	+	RNA	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	20407328	20407328	C	T	SNP	KRT16P3	ENST00000580113	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.825	-	-	-	no_errors	KRT16P3	HGNC	ENSG00000214822				111	0	0	55	19	25.6757
MAP2K3	0	genome.wustl.edu	37	17	21201726	21201726	+	Silent	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	21201726	21201726	A	G	SNP	MAP2K3	ENST00000342679	human	ensembl	74_37	+1	known	silent	c.51	p.G17	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP2K3	HGNC	ENSG00000034152				241	0	0	168	21	11.1111
KIAA0100	0	genome.wustl.edu	37	17	26943183	26943183	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	26943183	26943183	C	T	SNP	KIAA0100	ENST00000528896	human	ensembl	74_37	-1	known	silent	c.6321	p.E2107	1.000	pfam_FMP27_C	pfam_FMP27_C,pfam_FMP27_N,pfam_FMP27_GFWDK_dom	-	no_errors	KIAA0100	HGNC	ENSG00000007202				46	0	0	44	4	8.33333
RAB34	0	genome.wustl.edu	37	17	27042914	27042914	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	27042914	27042914	C	T	SNP	RAB34	ENST00000447716	human	ensembl	74_37	-1	known	missense	c.389	p.C130Y	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB34	HGNC	ENSG00000109113				84	0	0	77	7	8.33333
PHF12	0	genome.wustl.edu	37	17	27251130	27251130	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	27251130	27251130	G	A	SNP	PHF12	ENST00000332830	human	ensembl	74_37	-1	known	missense	c.512	p.A171V	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,superfamily_SMAD_FHA_domain,smart_Znf_PHD,pfscan_FHA_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF12	HGNC	ENSG00000109118				36	0	0	22	6	21.4286
SSH2	0	genome.wustl.edu	37	17	28003848	28003848	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	28003848	28003848	G	A	SNP	SSH2	ENST00000269033	human	ensembl	74_37	-1	known	nonsense	c.523	p.Q175*	1.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_DEK_C,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	SSH2	HGNC	ENSG00000141298				79	0	0	54	18	25
RDM1	0	genome.wustl.edu	37	17	34257080	34257080	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	34257080	34257080	C	A	SNP	RDM1	ENST00000293273	human	ensembl	74_37	-1	known	missense	c.276	p.K92N	0.997	pfam_Rad52_Rad22,pfscan_RRM_dom	pfam_RRM_dom,pfam_Rad52_Rad22,pfscan_RRM_dom	-	no_errors	RDM1	HGNC	ENSG00000187456				155	1	0.641026	128	32	20
MYO19	0	genome.wustl.edu	37	17	34883421	34883421	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	34883421	34883421	G	A	SNP	MYO19	ENST00000431794	human	ensembl	74_37	-1	known	silent	c.261	p.P87	0.106	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO19	HGNC	ENSG00000141140				24	0	0	20	3	13.0435
GPR179	0	genome.wustl.edu	37	17	36483525	36483525	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	36483525	36483525	C	T	SNP	GPR179	ENST00000342292	human	ensembl	74_37	-1	known	missense	c.5927	p.R1976H	0.000	NULL	pfam_GPCR_3_C,superfamily_Growth_fac_rcpt_N_dom,pfscan_GPCR_3_C	-	no_errors	GPR179	HGNC	ENSG00000188888				38	0	0	29	6	17.1429
ITGAE	0	genome.wustl.edu	37	17	3655092	3655092	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	3655092	3655092	G	A	SNP	ITGAE	ENST00000263087	human	ensembl	74_37	-1	known	missense	c.1745	p.A582V	0.991	smart_Int_alpha_beta-p,prints_Integrin_alpha	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_Integrin_alpha_C_CS,smart_VWF_A,smart_Int_alpha_beta-p,prints_Integrin_alpha,pfscan_VWF_A	-	no_errors	ITGAE	HGNC	ENSG00000083457				66	0	0	48	15	23.8095
LRRC37A11P	0	genome.wustl.edu	37	17	37188048	37188048	+	RNA	SNP	C	C	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	37188048	37188048	C	A	SNP	LRRC37A11P	ENST00000425901	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	LRRC37A11P	HGNC	ENSG00000214553				75	0	0	44	5	10.2041
CDK12	0	genome.wustl.edu	37	17	37673788	37673788	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	37673788	37673788	G	A	SNP	CDK12	ENST00000447079	human	ensembl	74_37	+1	known	missense	c.2942	p.R981H	1.000	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK12	HGNC	ENSG00000167258				73	0	0	51	9	15
ERBB2	0	genome.wustl.edu	37	17	37879899	37879899	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	37879899	37879899	G	A	SNP	ERBB2	ENST00000269571	human	ensembl	74_37	+1	known	missense	c.2194	p.G732S	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB2	HGNC	ENSG00000141736				17	0	0	8	2	20
ZPBP2	0	genome.wustl.edu	37	17	38024801	38024801	+	Splice_Site	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	38024801	38024801	G	A	SNP	ZPBP2	ENST00000348931	human	ensembl	74_37	+1	known	splice_site	c.53-1	e2-1	0.995	-	-	-	no_errors	ZPBP2	HGNC	ENSG00000186075				150	1	0.662252	127	21	14.1892
KRT28	0	genome.wustl.edu	37	17	38955915	38955915	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	38955915	38955915	G	A	SNP	KRT28	ENST00000306658	human	ensembl	74_37	-1	known	silent	c.231	p.S77	0.710	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT28	HGNC	ENSG00000173908				100	0	0	79	14	15.0538
KRT38	0	genome.wustl.edu	37	17	39593778	39593778	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	39593778	39593778	C	T	SNP	KRT38	ENST00000246646	human	ensembl	74_37	-1	known	silent	c.1257	p.P419	0.236	NULL	pfam_IF,prints_Keratin_I	-	no_errors	KRT38	HGNC	ENSG00000171360				19	0	0	8	3	27.2727
KRT19	0	genome.wustl.edu	37	17	39680724	39680724	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	39680724	39680724	G	A	SNP	KRT19	ENST00000361566	human	ensembl	74_37	-1	known	silent	c.729	p.T243	0.000	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT19	HGNC	ENSG00000171345				78	0	0	67	7	9.45946
PSMC3IP	0	genome.wustl.edu	37	17	40729286	40729286	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	40729286	40729286	T	C	SNP	PSMC3IP	ENST00000393795	human	ensembl	74_37	-1	known	missense	c.170	p.Q57R	1.000	pfam_TBPIP,pfam_BlaI_family	pfam_TBPIP,pfam_BlaI_family	-	no_errors	PSMC3IP	HGNC	ENSG00000131470				48	0	0	45	5	10
TUBG2	0	genome.wustl.edu	37	17	40818663	40818663	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	40818663	40818663	C	T	SNP	TUBG2	ENST00000251412	human	ensembl	74_37	+1	known	missense	c.1201	p.R401W	1.000	superfamily_Tub_FtsZ_C,prints_Tubulin,prints_Delta_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Gamma_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Beta_tubulin,prints_Alpha_tubulin	-	no_errors	TUBG2	HGNC	ENSG00000037042				90	0	0	56	16	22.2222
DHX8	0	genome.wustl.edu	37	17	41570275	41570275	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	41570275	41570275	C	T	SNP	DHX8	ENST00000262415	human	ensembl	74_37	+1	known	missense	c.730	p.R244W	0.611	NULL	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_NA-bd_OB-fold,smart_RNA-binding_domain_S1,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX8	HGNC	ENSG00000067596				130	0	0	112	19	14.5038
MPP3	0	genome.wustl.edu	37	17	41879176	41879176	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	41879176	41879176	C	T	SNP	MPP3	ENST00000398389	human	ensembl	74_37	-1	known	missense	c.1651	p.A551T	0.033	pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,smart_GK/Ca_channel_bsu,pfscan_Guanylate_kin-like	pfam_GK/Ca_channel_bsu,pfam_L27_C,pfam_PDZ,pfam_SH3_2,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	MPP3	HGNC	ENSG00000161647				81	0	0	66	17	20.4819
HDAC5	0	genome.wustl.edu	37	17	42156018	42156018	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	42156018	42156018	C	T	SNP	HDAC5	ENST00000225983	human	ensembl	74_37	-1	known	missense	c.3182	p.C1061Y	1.000	pirsf_Histone_deAcase_II_euk	pfam_His_deacetylse_dom,pfam_Hist_deacetylase_Gln_rich_N,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC5	HGNC	ENSG00000108840				129	0	0	87	25	22.3214
RUNDC3A	0	genome.wustl.edu	37	17	42390862	42390862	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	42390862	42390862	G	A	SNP	RUNDC3A	ENST00000426726	human	ensembl	74_37	+1	known	missense	c.449	p.R150Q	1.000	pfam_Run,smart_Run,pfscan_Run	pfam_Run,smart_Run,pfscan_Run	-	no_errors	RUNDC3A	HGNC	ENSG00000108309				35	0	0	35	7	16.6667
GRN	0	genome.wustl.edu	37	17	42429110	42429110	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	42429110	42429110	G	A	SNP	GRN	ENST00000053867	human	ensembl	74_37	+1	known	missense	c.1126	p.D376N	0.001	smart_Granulin	pfam_Granulin,smart_Granulin	-	no_errors	GRN	HGNC	ENSG00000030582				50	0	0	33	5	13.1579
FZD2	0	genome.wustl.edu	37	17	42635531	42635531	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	42635531	42635531	G	A	SNP	FZD2	ENST00000315323	human	ensembl	74_37	+1	known	missense	c.475	p.G159R	1.000	NULL	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD2	HGNC	ENSG00000180340				13	0	0	16	4	20
KANSL1	0	genome.wustl.edu	37	17	44116010	44116010	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	44116010	44116010	G	A	SNP	KANSL1	ENST00000262419	human	ensembl	74_37	-1	known	missense	c.2435	p.A812V	0.990	NULL	NULL	-	no_errors	KANSL1	HGNC	ENSG00000120071				59	0	0	56	12	17.6471
MYBBP1A	0	genome.wustl.edu	37	17	4448439	4448439	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	4448439	4448439	C	T	SNP	MYBBP1A	ENST00000381556	human	ensembl	74_37	-1	known	missense	c.2192	p.S731N	0.500	pfam_DNA_pol_V,superfamily_ARM-type_fold	pfam_DNA_pol_V,superfamily_ARM-type_fold	-	no_errors	MYBBP1A	HGNC	ENSG00000132382				24	0	0	19	4	17.3913
PELP1	0	genome.wustl.edu	37	17	4594694	4594694	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	4594694	4594694	C	T	SNP	PELP1	ENST00000301396	human	ensembl	74_37	-1	known	missense	c.293	p.R98H	0.962	NULL	pfam_Uncharacterised_NUC202,superfamily_ARM-type_fold	-	no_errors	PELP1	HGNC	ENSG00000141456				152	0	0	109	16	12.8
NFE2L1	0	genome.wustl.edu	37	17	46136299	46136299	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	46136299	46136299	G	A	SNP	NFE2L1	ENST00000362042	human	ensembl	74_37	+1	known	missense	c.1615	p.E539K	1.000	NULL	pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L1	HGNC	ENSG00000082641				58	0	0	28	15	34.8837
TM4SF5	0	genome.wustl.edu	37	17	4685809	4685809	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	4685809	4685809	G	A	SNP	TM4SF5	ENST00000270560	human	ensembl	74_37	+1	known	silent	c.270	p.S90	0.001	pfam_L6_membrane	pfam_L6_membrane	-	no_errors	TM4SF5	HGNC	ENSG00000142484				84	0	0	63	15	19.2308
ITGA3	0	genome.wustl.edu	37	17	48153070	48153070	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	48153070	48153070	C	T	SNP	ITGA3	ENST00000320031	human	ensembl	74_37	+1	known	missense	c.1645	p.R549C	0.002	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA3	HGNC	ENSG00000005884				31	0	0	24	3	11.1111
RNF167	0	genome.wustl.edu	37	17	4848022	4848022	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	4848022	4848022	G	A	SNP	RNF167	ENST00000262482	human	ensembl	74_37	+1	known	missense	c.764	p.R255H	0.999	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH,smart_Znf_RING,pfscan_Znf_RING	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF167	HGNC	ENSG00000108523				85	0	0	60	15	20
RNF43	0	genome.wustl.edu	37	17	56437605	56437605	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	56437605	56437605	C	T	SNP	RNF43	ENST00000407977	human	ensembl	74_37	-1	known	missense	c.857	p.R286Q	1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_C3HC4_RING-type,superfamily_PAS,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF43	HGNC	ENSG00000108375				58	0	0	48	6	11.1111
CLTC	0	genome.wustl.edu	37	17	57744280	57744280	+	Silent	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	57744280	57744280	T	C	SNP	CLTC	ENST00000269122	human	ensembl	74_37	+1	known	silent	c.2070	p.H690	0.957	pfam_Clathrin_H-chain/VPS_repeat,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_Clathrin_heavy_chain	pfam_Clathrin_H-chain/VPS_repeat,pfam_Clathrin_H-chain_propeller_rpt,pfam_Clathrin_H-chain_linker_core,superfamily_Clathrin_H-chain_propeller_N,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_Clathrin_heavy_chain	-	no_errors	CLTC	HGNC	ENSG00000141367				78	0	0	52	12	18.75
HEATR6	0	genome.wustl.edu	37	17	58134524	58134524	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	58134524	58134524	C	T	SNP	HEATR6	ENST00000184956	human	ensembl	74_37	-1	known	missense	c.1964	p.R655Q	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR6	HGNC	ENSG00000068097				170	0	0	131	30	18.6335
HEATR6	0	genome.wustl.edu	37	17	58147131	58147131	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	58147131	58147131	C	T	SNP	HEATR6	ENST00000184956	human	ensembl	74_37	-1	known	missense	c.880	p.D294N	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR6	HGNC	ENSG00000068097				119	0	0	102	20	16.3934
TBX4	0	genome.wustl.edu	37	17	59557600	59557600	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	59557600	59557600	C	T	SNP	TBX4	ENST00000393853	human	ensembl	74_37	+1	known	missense	c.941	p.A314V	0.478	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX4	HGNC	ENSG00000121075				32	0	0	32	4	11.1111
TBC1D3P2	0	genome.wustl.edu	37	17	60344534	60344534	+	RNA	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	60344534	60344534	G	A	SNP	TBC1D3P2	ENST00000339120	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.965	-	-	-	no_errors	TBC1D3P2	HGNC	ENSG00000188755				203	0	0	163	38	18.9055
TANC2	0	genome.wustl.edu	37	17	61497887	61497887	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	61497887	61497887	G	A	SNP	TANC2	ENST00000424789	human	ensembl	74_37	+1	known	missense	c.4544	p.R1515H	0.999	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC2	HGNC	ENSG00000170921				68	0	0	39	6	13.3333
FTSJ3	0	genome.wustl.edu	37	17	61898993	61898993	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	61898993	61898993	G	A	SNP	FTSJ3	ENST00000427159	human	ensembl	74_37	-1	known	missense	c.1607	p.A536V	0.137	NULL	pfam_rRNA_MeTfrase_Spb1_C,pfam_rRNA_MeTrfase_FtsJ_dom,pfam_rRNA_MeTfrase_Spb1_DUF3381	-	no_errors	FTSJ3	HGNC	ENSG00000108592				205	0	0	129	34	20.8589
SCN4A	0	genome.wustl.edu	37	17	62020407	62020407	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	62020407	62020407	T	C	SNP	SCN4A	ENST00000435607	human	ensembl	74_37	-1	known	missense	c.4067	p.D1356G	1.000	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfscan_IQ_motif_EF-hand-BS,prints_Na_channel_a4su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN4A	HGNC	ENSG00000007314				121	0	0	91	19	17.2727
CACNG5	0	genome.wustl.edu	37	17	64880822	64880822	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	64880822	64880822	C	T	SNP	CACNG5	ENST00000169565	human	ensembl	74_37	+1	known	missense	c.614	p.T205I	0.002	NULL	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_gsu,prints_VDCC_g5su	-	no_errors	CACNG5	HGNC	ENSG00000075429				50	0	0	41	13	24.0741
ARSG	0	genome.wustl.edu	37	17	66303763	66303763	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	66303763	66303763	C	T	SNP	ARSG	ENST00000448504	human	ensembl	74_37	+1	known	silent	c.129	p.A43	0.477	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSG	HGNC	ENSG00000141337				58	0	0	50	12	19.3548
ABCA8	0	genome.wustl.edu	37	17	66937011	66937011	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	66937011	66937011	G	A	SNP	ABCA8	ENST00000430352	human	ensembl	74_37	-1	known	silent	c.189	p.D63	0.631	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA8	HGNC	ENSG00000141338				59	0	0	60	6	9.09091
ABCA9	0	genome.wustl.edu	37	17	66982353	66982353	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	66982353	66982353	G	A	SNP	ABCA9	ENST00000340001	human	ensembl	74_37	-1	known	missense	c.4160	p.A1387V	0.477	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA9	HGNC	ENSG00000154258				107	0	0	85	15	15
ABCA9	0	genome.wustl.edu	37	17	67016664	67016664	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	67016664	67016664	A	G	SNP	ABCA9	ENST00000340001	human	ensembl	74_37	-1	known	missense	c.2465	p.L822P	0.914	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA9	HGNC	ENSG00000154258				81	0	0	67	18	21.1765
ABCA9	0	genome.wustl.edu	37	17	67039677	67039677	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	67039677	67039677	G	A	SNP	ABCA9	ENST00000340001	human	ensembl	74_37	-1	known	silent	c.753	p.Y251	0.001	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA9	HGNC	ENSG00000154258				88	0	0	58	12	17.1429
ABCA6	0	genome.wustl.edu	37	17	67110969	67110969	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	67110969	67110969	G	A	SNP	ABCA6	ENST00000284425	human	ensembl	74_37	-1	known	silent	c.1716	p.T572	0.040	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA6	HGNC	ENSG00000154262				131	1	0.757576	107	13	10.8333
BCL6B	0	genome.wustl.edu	37	17	6927588	6927588	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	6927588	6927588	C	T	SNP	BCL6B	ENST00000293805	human	ensembl	74_37	+1	known	silent	c.366	p.H122	0.291	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	BCL6B	HGNC	ENSG00000161940				76	0	0	59	13	18.0556
CDC42EP4	0	genome.wustl.edu	37	17	71282053	71282053	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	71282053	71282053	G	T	SNP	CDC42EP4	ENST00000335793	human	ensembl	74_37	-1	known	missense	c.587	p.A196D	0.976	NULL	pfam_CRIB_dom,smart_CRIB_dom,pfscan_CRIB_dom	-	no_errors	CDC42EP4	HGNC	ENSG00000179604				63	0	0	37	7	15.9091
ACAP1	0	genome.wustl.edu	37	17	7252342	7252342	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	7252342	7252342	G	A	SNP	ACAP1	ENST00000158762	human	ensembl	74_37	+1	known	silent	c.1707	p.L569	0.985	NULL	pfam_ArfGAP,pfam_Pleckstrin_homology,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ACAP1	HGNC	ENSG00000072818				54	0	0	38	4	9.52381
NXN	0	genome.wustl.edu	37	17	725610	725610	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	725610	725610	C	T	SNP	NXN	ENST00000336868	human	ensembl	74_37	-1	known	missense	c.700	p.V234I	1.000	pfam_AhpC/TSA,pfam_Redoxin,superfamily_Thioredoxin-like_fold	pfam_AhpC/TSA,pfam_Redoxin,superfamily_Thioredoxin-like_fold	-	no_errors	NXN	HGNC	ENSG00000167693				59	0	0	48	11	18.6441
MRPS7	0	genome.wustl.edu	37	17	73259534	73259534	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	73259534	73259534	C	A	SNP	MRPS7	ENST00000245539	human	ensembl	74_37	+1	known	missense	c.453	p.N151K	1.000	pfam_Ribosomal_S7_dom,superfamily_Ribosomal_S7_dom	pfam_Ribosomal_S7_dom,superfamily_Ribosomal_S7_dom	-	no_errors	MRPS7	HGNC	ENSG00000125445				421	0	0	339	72	17.5182
C17orf74	0	genome.wustl.edu	37	17	7329690	7329690	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	7329690	7329690	G	A	SNP	C17orf74	ENST00000333870	human	ensembl	74_37	+1	known	missense	c.380	p.R127H	0.001	NULL	NULL	-	no_errors	C17orf74	HGNC	ENSG00000184560				36	0	0	19	6	24
ZBTB4	0	genome.wustl.edu	37	17	7369348	7369348	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	7369348	7369348	C	T	SNP	ZBTB4	ENST00000311403	human	ensembl	74_37	-1	known	missense	c.773	p.R258Q	0.927	pfscan_Znf_C2H2	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB4	HGNC	ENSG00000174282				17	0	0	6	4	40
FBF1	0	genome.wustl.edu	37	17	73908365	73908365	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	73908365	73908365	T	C	SNP	FBF1	ENST00000389570	human	ensembl	74_37	-1	known	missense	c.3229	p.T1077A	0.000	NULL	superfamily_HRDC-like	-	no_errors	FBF1	HGNC	ENSG00000188878				8	0	0	8	3	27.2727
QRICH2	0	genome.wustl.edu	37	17	74288203	74288203	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	74288203	74288203	G	A	SNP	QRICH2	ENST00000262765	human	ensembl	74_37	-1	known	missense	c.2107	p.R703C	0.000	NULL	NULL	-	no_errors	QRICH2	HGNC	ENSG00000129646				77	0	0	51	11	17.7419
RHBDF2	0	genome.wustl.edu	37	17	74470845	74470845	+	Silent	SNP	G	G	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	74470845	74470845	G	T	SNP	RHBDF2	ENST00000313080	human	ensembl	74_37	-1	known	silent	c.1356	p.I452	1.000	NULL	pfam_Rhomboid_SP,pfam_Peptidase_S54_rhomboid_dom	-	no_errors	RHBDF2	HGNC	ENSG00000129667				59	0	0	49	11	18.3333
CYGB	0	genome.wustl.edu	37	17	74527577	74527577	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	74527577	74527577	C	T	SNP	CYGB	ENST00000293230	human	ensembl	74_37	-1	known	missense	c.340	p.A114T	1.000	pfam_Globin,superfamily_Globin-like,pfscan_Globin,prints_Globin_lamprey/hagfish	pfam_Globin,superfamily_Globin-like,pfscan_Globin,prints_Globin_lamprey/hagfish,prints_Myoglobin	-	no_errors	CYGB	HGNC	ENSG00000161544				55	0	0	21	7	25
SEC14L1	0	genome.wustl.edu	37	17	75212636	75212636	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	75212636	75212636	G	A	SNP	SEC14L1	ENST00000392476	human	ensembl	74_37	+1	known	missense	c.2150	p.R717Q	1.000	NULL	pfam_PRELI/MSF1,pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,superfamily_GOLD,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_GOLD,pfscan_PRELI/MSF1	-	no_errors	SEC14L1	HGNC	ENSG00000129657				230	0	0	180	42	18.9189
TNRC6C	0	genome.wustl.edu	37	17	76083023	76083023	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	76083023	76083023	G	A	SNP	TNRC6C	ENST00000335749	human	ensembl	74_37	+1	known	silent	c.3642	p.P1214	0.999	NULL	pfam_Argonaute_hook_dom,pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	TNRC6C	HGNC	ENSG00000078687				50	0	0	29	9	23.6842
ENGASE	0	genome.wustl.edu	37	17	77082376	77082376	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	77082376	77082376	G	T	SNP	ENGASE	ENST00000579016	human	ensembl	74_37	+1	known	missense	c.2177	p.R726L	0.000	NULL	pfam_Glyco_hydro_85,pfscan_BRCT_dom	-	no_errors	ENGASE	HGNC	ENSG00000167280				34	0	0	22	3	12
KDM6B	0	genome.wustl.edu	37	17	7750871	7750871	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	7750871	7750871	C	T	SNP	KDM6B	ENST00000254846	human	ensembl	74_37	+1	known	missense	c.1265	p.A422V	0.999	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM6B	HGNC	ENSG00000132510				26	0	0	22	5	18.5185
CARD14	0	genome.wustl.edu	37	17	78176086	78176086	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	78176086	78176086	C	T	SNP	CARD14	ENST00000344227	human	ensembl	74_37	+1	known	nonsense	c.2086	p.Q696*	0.984	NULL	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,superfamily_PDZ,pfscan_CARD,pfscan_PDZ,pfscan_Guanylate_kin-like	-	no_errors	CARD14	HGNC	ENSG00000141527				62	0	0	36	8	18.1818
RNF213	0	genome.wustl.edu	37	17	78354648	78354648	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	78354648	78354648	C	T	SNP	RNF213	ENST00000582970	human	ensembl	74_37	+1	known	missense	c.13658	p.T4553M	0.997	NULL	superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821				139	0	0	109	27	19.8529
RPTOR	0	genome.wustl.edu	37	17	78599546	78599546	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	78599546	78599546	C	A	SNP	RPTOR	ENST00000306801	human	ensembl	74_37	+1	known	missense	c.218	p.P73H	1.000	prints_Raptor	pfam_HEAT,pfam_WD40_repeat,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom,prints_Raptor	-	no_errors	RPTOR	HGNC	ENSG00000141564				128	0	0	85	9	9.57447
ALOXE3	0	genome.wustl.edu	37	17	7999976	7999976	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	7999976	7999976	G	T	SNP	ALOXE3	ENST00000318227	human	ensembl	74_37	-1	known	missense	c.2501	p.P834H	1.000	pfam_LipOase_C,superfamily_LipOase_C	pfam_LipOase_C,pfam_PLAT/LH2_dom,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom,prints_LipOase_C	-	no_errors	ALOXE3	HGNC	ENSG00000179148				91	0	0	78	18	18.75
GPS1	0	genome.wustl.edu	37	17	80011774	80011774	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	80011774	80011774	G	A	SNP	GPS1	ENST00000355130	human	ensembl	74_37	+1	known	missense	c.277	p.G93S	1.000	NULL	pfam_26S_proteasome_reg_su-Rpn7,pfam_PCI_dom,smart_PCI_dom	-	no_errors	GPS1	HGNC	ENSG00000169727				39	0	0	23	6	20.6897
DUS1L	0	genome.wustl.edu	37	17	80019841	80019841	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	80019841	80019841	G	A	SNP	DUS1L	ENST00000306796	human	ensembl	74_37	-1	known	missense	c.529	p.R177C	1.000	pfam_tRNA_hU_synthase	pfam_tRNA_hU_synthase	-	no_errors	DUS1L	HGNC	ENSG00000169718				37	0	0	32	9	21.9512
ZNF750	0	genome.wustl.edu	37	17	80788993	80788993	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	80788993	80788993	G	A	SNP	ZNF750	ENST00000269394	human	ensembl	74_37	-1	known	silent	c.1338	p.Y446	0.000	NULL	NULL	-	no_errors	ZNF750	HGNC	ENSG00000141579				68	0	0	50	13	20.6349
PFAS	0	genome.wustl.edu	37	17	8158378	8158378	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	8158378	8158378	C	T	SNP	PFAS	ENST00000314666	human	ensembl	74_37	+1	known	silent	c.312	p.I104	0.834	tigrfam_PRibForGlyAmidine_synth	pfam_AIR_synth_C_dom,pfam_AIR_synth_N_dom,superfamily_PurM_N-like,superfamily_AIR_synth_C_dom,tigrfam_PRibForGlyAmidine_synth	-	no_errors	PFAS	HGNC	ENSG00000178921				47	0	0	47	6	11.3208
KRBA2	0	genome.wustl.edu	37	17	8272949	8272949	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	8272949	8272949	C	T	SNP	KRBA2	ENST00000331336	human	ensembl	74_37	-1	known	missense	c.982	p.V328I	0.102	superfamily_RNaseH-like_dom,pfscan_Integrase_cat-core	pfam_Krueppel-associated_box,superfamily_RNaseH-like_dom,superfamily_Krueppel-associated_box,pfscan_Integrase_cat-core	-	no_errors	KRBA2	HGNC	ENSG00000184619				60	0	0	64	12	15.7895
MYH10	0	genome.wustl.edu	37	17	8396161	8396161	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	8396161	8396161	G	A	SNP	MYH10	ENST00000396239	human	ensembl	74_37	-1	known	missense	c.4361	p.T1454M	0.939	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_HR1_rho-bd,superfamily_UBA-like,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH10	HGNC	ENSG00000133026				71	0	0	47	12	20.339
PIK3R5	0	genome.wustl.edu	37	17	8788065	8788065	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	8788065	8788065	G	A	SNP	PIK3R5	ENST00000447110	human	ensembl	74_37	-1	known	missense	c.2164	p.R722W	1.000	pfam_PI3K_1B_gamma_p101_su	pfam_PI3K_1B_gamma_p101_su	-	no_errors	PIK3R5	HGNC	ENSG00000141506				28	0	0	21	3	12.5
USP43	0	genome.wustl.edu	37	17	9615374	9615374	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	9615374	9615374	T	G	SNP	USP43	ENST00000285199	human	ensembl	74_37	+1	known	missense	c.2260	p.S754A	0.995	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP43	HGNC	ENSG00000154914				23	0	0	19	7	26.9231
DHRS7C	0	genome.wustl.edu	37	17	9674812	9674812	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	9674812	9674812	T	C	SNP	DHRS7C	ENST00000330255	human	ensembl	74_37	-1	known	missense	c.932	p.E311G	1.000	NULL	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	DHRS7C	HGNC	ENSG00000184544				23	0	0	17	3	15
LDLRAD4	0	genome.wustl.edu	37	18	13621228	13621228	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	18	13621228	13621228	C	T	SNP	LDLRAD4	ENST00000359446	human	ensembl	74_37	+1	known	silent	c.294	p.N98	0.994	NULL	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	-	no_errors	LDLRAD4	HGNC	ENSG00000168675				57	0	0	66	9	12
POTEC	0	genome.wustl.edu	37	18	14542858	14542858	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	18	14542858	14542858	G	A	SNP	POTEC	ENST00000358970	human	ensembl	74_37	-1	known	silent	c.288	p.S96	0.012	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	POTEC	HGNC	ENSG00000183206				206	0	0	170	26	13.2653
DSG3	0	genome.wustl.edu	37	18	29038474	29038474	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	18	29038474	29038474	C	T	SNP	DSG3	ENST00000257189	human	ensembl	74_37	+1	known	missense	c.283	p.P95S	0.984	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmoglein,prints_Desmosomal_cadherin	-	no_errors	DSG3	HGNC	ENSG00000134757				83	0	0	76	4	5
ASXL3	0	genome.wustl.edu	37	18	31323494	31323494	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	18	31323494	31323494	C	T	SNP	ASXL3	ENST00000269197	human	ensembl	74_37	+1	known	missense	c.3682	p.P1228S	1.000	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL3	HGNC	ENSG00000141431				71	0	0	68	8	10.5263
ASXL3	0	genome.wustl.edu	37	18	31325001	31325001	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	18	31325001	31325001	T	A	SNP	ASXL3	ENST00000269197	human	ensembl	74_37	+1	known	missense	c.5189	p.V1730D	0.472	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL3	HGNC	ENSG00000141431				58	0	0	38	11	22.449
ASXL3	0	genome.wustl.edu	37	18	31326157	31326157	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	18	31326157	31326157	C	T	SNP	ASXL3	ENST00000269197	human	ensembl	74_37	+1	known	silent	c.6345	p.F2115	1.000	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL3	HGNC	ENSG00000141431				96	0	0	83	17	17
BCL2	0	genome.wustl.edu	37	18	60985789	60985789	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	18	60985789	60985789	G	A	SNP	BCL2	ENST00000333681	human	ensembl	74_37	-1	known	silent	c.111	p.A37	0.000	prints_Apop_reg_Bcl2,prints_Apop_reg_BclX,tigrfam_Bcl2/BclX	pfam_Blc2_fam,pfam_Bcl2_BH4,smart_Bcl2_BH4,pfscan_Bcl2-like,pfscan_Bcl2_BH4,prints_Apop_reg_Bcl2,prints_Blc2_fam,prints_Apop_reg_BclX,tigrfam_Bcl2/BclX	-	no_errors	BCL2	HGNC	ENSG00000171791				65	0	0	36	7	16.2791
ZNF407	0	genome.wustl.edu	37	18	72343485	72343485	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	18	72343485	72343485	G	A	SNP	ZNF407	ENST00000299687	human	ensembl	74_37	+1	known	silent	c.510	p.P170	0.001	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,smart_Znf_U1,pfscan_Znf_C2H2	-	no_errors	ZNF407	HGNC	ENSG00000215421				121	0	0	98	12	10.9091
ZNF236	0	genome.wustl.edu	37	18	74583706	74583706	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	18	74583706	74583706	A	G	SNP	ZNF236	ENST00000253159	human	ensembl	74_37	+1	known	missense	c.586	p.T196A	0.990	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF236	HGNC	ENSG00000130856				108	0	0	78	16	17.0213
GALR1	0	genome.wustl.edu	37	18	74980856	74980856	+	Nonstop_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	18	74980856	74980856	T	C	SNP	GALR1	ENST00000299727	human	ensembl	74_37	+1	known	nonstop	c.1048	p.*350R	1.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GAL1_rcpt,prints_GPCR_Rhodpsn,prints_Galanin_rcpt,prints_NPY_rcpt	-	no_errors	GALR1	HGNC	ENSG00000166573				107	0	0	96	17	15.0442
PPAN-P2RY11	0	genome.wustl.edu	37	19	10225012	10225012	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	10225012	10225012	C	T	SNP	PPAN-P2RY11	ENST00000393796	human	ensembl	74_37	+1	known	silent	c.1983	p.A661	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_Brix,pfam_GPCR_Rhodpsn,superfamily_Anticodon-bd,smart_Brix,prints_GPCR_Rhodpsn,pfscan_Brix,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	PPAN-P2RY11	HGNC	ENSG00000243207				47	0	0	30	7	18.9189
ICAM1	0	genome.wustl.edu	37	19	10394931	10394931	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	10394931	10394931	G	A	SNP	ICAM1	ENST00000264832	human	ensembl	74_37	+1	known	missense	c.860	p.R287Q	0.000	NULL	pfam_ICAM_N,smart_Ig_sub,prints_ICAM_VCAM_N,prints_ICAM	-	no_errors	ICAM1	HGNC	ENSG00000090339				57	0	0	37	11	22.9167
PDE4A	0	genome.wustl.edu	37	19	10568738	10568738	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	10568738	10568738	G	A	SNP	PDE4A	ENST00000352831	human	ensembl	74_37	+1	known	missense	c.1061	p.R354Q	0.995	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE4A	HGNC	ENSG00000065989				101	0	0	50	14	21.875
SMARCA4	0	genome.wustl.edu	37	19	11143999	11143999	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	11143999	11143999	G	A	SNP	SMARCA4	ENST00000358026	human	ensembl	74_37	+1	known	missense	c.3580	p.G1194R	1.000	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_P-loop_NTPase,superfamily_Bromodomain,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,prints_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain	-	no_errors	SMARCA4	HGNC	ENSG00000127616				81	0	0	51	12	19.0476
DOCK6	0	genome.wustl.edu	37	19	11312758	11312758	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	11312758	11312758	T	C	SNP	DOCK6	ENST00000294618	human	ensembl	74_37	-1	known	missense	c.5495	p.Y1832C	1.000	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N	-	no_errors	DOCK6	HGNC	ENSG00000130158				54	0	0	38	6	13.6364
ZNF799	0	genome.wustl.edu	37	19	12501739	12501739	+	Silent	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	12501739	12501739	A	G	SNP	ZNF799	ENST00000430385	human	ensembl	74_37	-1	known	silent	c.1473	p.L491	0.004	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF799	HGNC	ENSG00000196466				101	0	0	95	16	14.4144
MAST1	0	genome.wustl.edu	37	19	12984811	12984811	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	12984811	12984811	C	T	SNP	MAST1	ENST00000251472	human	ensembl	74_37	+1	known	silent	c.3840	p.G1280	0.231	NULL	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_dom	-	no_errors	MAST1	HGNC	ENSG00000105613				10	0	0	10	3	23.0769
FARSA	0	genome.wustl.edu	37	19	13041110	13041110	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	13041110	13041110	G	A	SNP	FARSA	ENST00000314606	human	ensembl	74_37	-1	known	missense	c.430	p.R144W	0.557	NULL	pfam_Phenylalanyl-tRNA_Synthase,pfam_aa-tRNA-synt_IIb_cons-dom,pfam_aa-tRNA-synt_II,pfscan_aa-tRNA-synth_II,tigrfam_Phe-tRNA-synth_IIc_asu	-	no_errors	FARSA	HGNC	ENSG00000179115				36	0	0	25	3	10.7143
RFX1	0	genome.wustl.edu	37	19	14077273	14077273	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	14077273	14077273	A	G	SNP	RFX1	ENST00000254325	human	ensembl	74_37	-1	known	missense	c.1921	p.Y641H	1.000	NULL	pfam_RFX1_trans_act,pfam_DNA-bd_RFX	-	no_errors	RFX1	HGNC	ENSG00000132005				38	0	0	27	4	12.9032
CCDC105	0	genome.wustl.edu	37	19	15132473	15132473	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	15132473	15132473	C	T	SNP	CCDC105	ENST00000292574	human	ensembl	74_37	+1	known	missense	c.1087	p.R363W	0.999	pfam_Tektin	pfam_Tektin	-	no_errors	CCDC105	HGNC	ENSG00000160994				58	0	0	52	11	17.4603
EPHX3	0	genome.wustl.edu	37	19	15342161	15342161	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	15342161	15342161	C	T	SNP	EPHX3	ENST00000221730	human	ensembl	74_37	-1	known	missense	c.376	p.V126I	0.697	pfam_AB_hydrolase_1,prints_AB_hydrolase_1	pfam_AB_hydrolase_1,prints_Epox_hydrolase-like,prints_AB_hydrolase_1	-	no_errors	EPHX3	HGNC	ENSG00000105131				37	0	0	32	8	20
BRD4	0	genome.wustl.edu	37	19	15364508	15364508	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	15364508	15364508	G	A	SNP	BRD4	ENST00000360016	human	ensembl	74_37	-1	known	missense	c.2245	p.R749C	0.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD4	HGNC	ENSG00000141867				35	0	0	33	7	17.5
WIZ	0	genome.wustl.edu	37	19	15538021	15538021	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	15538021	15538021	G	A	SNP	WIZ	ENST00000389282	human	ensembl	74_37	-1	known	missense	c.3424	p.P1142S	0.035	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	WIZ	HGNC	ENSG00000011451				31	0	0	26	7	21.2121
C19orf44	0	genome.wustl.edu	37	19	16612314	16612314	+	Silent	SNP	C	C	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	16612314	16612314	C	A	SNP	C19orf44	ENST00000221671	human	ensembl	74_37	+1	known	silent	c.711	p.G237	0.000	NULL	NULL	-	no_errors	C19orf44	HGNC	ENSG00000105072				97	0	0	95	9	8.65385
ENSG00000141979	0	genome.wustl.edu	37	19	16677452	16677452	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	16677452	16677452	C	T	SNP	ENSG00000141979	ENST00000409035	human	ensembl	74_37	-1	known	missense	c.1228	p.G410R	0.988	NULL	pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub	-	no_errors	CTD-3222D19.2	Clone_based_vega_gene	ENSG00000141979				71	0	0	51	20	28.169
UNC13A	0	genome.wustl.edu	37	19	17759362	17759362	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	17759362	17759362	G	A	SNP	UNC13A	ENST00000428389	human	ensembl	74_37	-1	known	missense	c.1958	p.T653I	1.000	pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd	pfam_Munc13_subgr_dom-2,pfam_C2_dom,pfam_Ca-dep_secretion_activator,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_dom,smart_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13A	HGNC	ENSG00000130477				49	0	0	26	5	16.129
JAK3	0	genome.wustl.edu	37	19	17943458	17943458	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	17943458	17943458	G	A	SNP	JAK3	ENST00000458235	human	ensembl	74_37	-1	known	silent	c.2550	p.A850	0.999	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain,pfscan_Prot_kinase_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak3,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	JAK3	HGNC	ENSG00000105639				65	0	0	51	11	17.7419
KLHL26	0	genome.wustl.edu	37	19	18779089	18779089	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	18779089	18779089	G	A	SNP	KLHL26	ENST00000300976	human	ensembl	74_37	+1	known	silent	c.882	p.Q294	1.000	pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL26	HGNC	ENSG00000167487				54	0	0	42	9	17.6471
AP3D1	0	genome.wustl.edu	37	19	2102224	2102224	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	2102224	2102224	G	A	SNP	AP3D1	ENST00000355272	human	ensembl	74_37	-1	known	missense	c.3596	p.T1199M	0.028	pfam_BLV_receptor	pfam_BLV_receptor,pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_complex_dsu	-	no_errors	AP3D1	HGNC	ENSG00000065000				153	0	0	98	23	19.0083
AP3D1	0	genome.wustl.edu	37	19	2138638	2138638	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	2138638	2138638	C	T	SNP	AP3D1	ENST00000355272	human	ensembl	74_37	-1	known	missense	c.172	p.A58T	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_complex_dsu	pfam_BLV_receptor,pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_complex_dsu	-	no_errors	AP3D1	HGNC	ENSG00000065000				100	0	0	87	12	12.1212
ZNF536	0	genome.wustl.edu	37	19	31039431	31039431	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	31039431	31039431	G	A	SNP	ZNF536	ENST00000355537	human	ensembl	74_37	+1	known	missense	c.2905	p.E969K	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF536	HGNC	ENSG00000198597				206	0	0	141	32	18.4971
TSHZ3	0	genome.wustl.edu	37	19	31769889	31769889	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	31769889	31769889	G	A	SNP	TSHZ3	ENST00000240587	human	ensembl	74_37	-1	known	silent	c.810	p.D270	0.324	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ3	HGNC	ENSG00000121297				210	0	0	128	33	20.4969
GPATCH1	0	genome.wustl.edu	37	19	33621034	33621034	+	Splice_Site	SNP	A	A	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	33621034	33621034	A	C	SNP	GPATCH1	ENST00000170564	human	ensembl	74_37	+1	known	splice_site	c.2766-2	e20-2	1.000	-	-	-	no_errors	GPATCH1	HGNC	ENSG00000076650				120	0	0	88	12	12
GRAMD1A	0	genome.wustl.edu	37	19	35514416	35514416	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	35514416	35514416	C	T	SNP	GRAMD1A	ENST00000317991	human	ensembl	74_37	+1	known	nonsense	c.2047	p.Q683*	1.000	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD1A	HGNC	ENSG00000089351				23	0	0	15	4	21.0526
KRTDAP	0	genome.wustl.edu	37	19	35981334	35981334	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	35981334	35981334	G	A	SNP	KRTDAP	ENST00000338897	human	ensembl	74_37	-1	known	missense	c.11	p.P4L	0.784	NULL	NULL	-	no_errors	KRTDAP	HGNC	ENSG00000188508				75	0	0	73	8	9.87654
PRODH2	0	genome.wustl.edu	37	19	36290978	36290978	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	36290978	36290978	G	A	SNP	PRODH2	ENST00000301175	human	ensembl	74_37	-1	known	missense	c.1573	p.R525W	0.026	NULL	pfam_Proline_DH	-	no_errors	PRODH2	HGNC	ENSG00000250799				17	0	0	15	5	25
PIP5K1C	0	genome.wustl.edu	37	19	3648676	3648676	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	3648676	3648676	G	A	SNP	PIP5K1C	ENST00000537021	human	ensembl	74_37	-1	known	silent	c.1158	p.R386	0.867	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP5K1C	HGNC	ENSG00000186111				22	0	0	14	4	22.2222
ZNF527	0	genome.wustl.edu	37	19	37879513	37879513	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	37879513	37879513	C	T	SNP	ZNF527	ENST00000436120	human	ensembl	74_37	+1	known	nonsense	c.562	p.Q188*	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF527	HGNC	ENSG00000189164				58	0	0	79	14	15.0538
SIPA1L3	0	genome.wustl.edu	37	19	38673271	38673271	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	38673271	38673271	G	A	SNP	SIPA1L3	ENST00000222345	human	ensembl	74_37	+1	known	missense	c.4321	p.V1441I	0.994	NULL	pfam_DUF3401,pfam_Rap_GAP_dom,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L3	HGNC	ENSG00000105738				94	0	0	60	16	21.0526
RYR1	0	genome.wustl.edu	37	19	38959976	38959976	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	38959976	38959976	C	T	SNP	RYR1	ENST00000359596	human	ensembl	74_37	+1	known	silent	c.3588	p.G1196	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218				70	0	0	81	13	13.8298
RYR1	0	genome.wustl.edu	37	19	38976392	38976392	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	38976392	38976392	C	T	SNP	RYR1	ENST00000359596	human	ensembl	74_37	+1	known	silent	c.5097	p.D1699	0.982	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218				53	0	0	36	8	18.1818
FCGBP	0	genome.wustl.edu	37	19	40368650	40368650	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	40368650	40368650	C	T	SNP	FCGBP	ENST00000221347	human	ensembl	74_37	-1	known	missense	c.12698	p.G4233D	0.997	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920				78	0	0	55	7	11.2903
SPTBN4	0	genome.wustl.edu	37	19	40996007	40996007	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	40996007	40996007	G	A	SNP	SPTBN4	ENST00000352632	human	ensembl	74_37	+1	known	missense	c.347	p.R116Q	1.000	pirsf_Spectrin_bsu,pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN4	HGNC	ENSG00000160460				23	0	0	23	7	23.3333
CEACAM7	0	genome.wustl.edu	37	19	42190985	42190985	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	42190985	42190985	G	A	SNP	CEACAM7	ENST00000006724	human	ensembl	74_37	-1	known	nonsense	c.232	p.R78*	0.000	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	CEACAM7	HGNC	ENSG00000007306				120	0	0	89	17	16.0377
ATP1A3	0	genome.wustl.edu	37	19	42474392	42474392	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	42474392	42474392	C	T	SNP	ATP1A3	ENST00000302102	human	ensembl	74_37	-1	known	silent	c.2487	p.P829	0.103	pfam_ATPase_P-typ_cation-transptr_C,tigrfam_ATPase_P-typ_Na/K_IIC	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP1A3	HGNC	ENSG00000105409				58	0	0	33	9	21.4286
CIC	0	genome.wustl.edu	37	19	42797150	42797150	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	42797150	42797150	G	A	SNP	CIC	ENST00000575354	human	ensembl	74_37	+1	known	missense	c.3512	p.R1171Q	1.000	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	CIC	HGNC	ENSG00000079432				35	0	0	31	6	16.2162
UBXN6	0	genome.wustl.edu	37	19	4446147	4446147	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	4446147	4446147	G	A	SNP	UBXN6	ENST00000301281	human	ensembl	74_37	-1	known	missense	c.1099	p.R367W	0.075	pfam_UBX,smart_UBX,pfscan_UBX	pfam_PUB_domain,pfam_UBX,smart_PUG-dom,smart_UBX,pfscan_UBX	-	no_errors	UBXN6	HGNC	ENSG00000167671				16	0	0	5	2	28.5714
UBXN6	0	genome.wustl.edu	37	19	4453928	4453928	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	4453928	4453928	C	A	SNP	UBXN6	ENST00000301281	human	ensembl	74_37	-1	known	missense	c.246	p.Q82H	1.000	NULL	pfam_PUB_domain,pfam_UBX,smart_PUG-dom,smart_UBX,pfscan_UBX	-	no_errors	UBXN6	HGNC	ENSG00000167671				61	0	0	39	7	15.2174
BCAM	0	genome.wustl.edu	37	19	45315631	45315631	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	45315631	45315631	C	T	SNP	BCAM	ENST00000270233	human	ensembl	74_37	+1	known	missense	c.416	p.A139V	0.001	smart_Ig_sub,pfscan_Ig-like_dom	pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	BCAM	HGNC	ENSG00000187244				18	0	0	9	3	25
BCAM	0	genome.wustl.edu	37	19	45321843	45321843	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	45321843	45321843	C	T	SNP	BCAM	ENST00000270233	human	ensembl	74_37	+1	known	silent	c.1143	p.V381	0.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	BCAM	HGNC	ENSG00000187244				36	0	0	28	6	17.6471
PNMAL1	0	genome.wustl.edu	37	19	46974273	46974273	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	46974273	46974273	A	G	SNP	PNMAL1	ENST00000313683	human	ensembl	74_37	-1	known	missense	c.20	p.M7T	0.578	NULL	NULL	-	no_errors	PNMAL1	HGNC	ENSG00000182013				59	0	0	56	12	17.6471
PRR12	0	genome.wustl.edu	37	19	50118249	50118249	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	50118249	50118249	G	A	SNP	PRR12	ENST00000418929	human	ensembl	74_37	+1	novel	silent	c.5007	p.R1669	1.000	NULL	NULL	-	no_errors	PRR12	HGNC	ENSG00000126464				37	0	0	32	5	13.5135
PRR12	0	genome.wustl.edu	37	19	50123625	50123625	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	50123625	50123625	G	A	SNP	PRR12	ENST00000418929	human	ensembl	74_37	+1	novel	silent	c.5514	p.G1838	0.998	NULL	NULL	-	no_errors	PRR12	HGNC	ENSG00000126464				25	0	0	17	6	26.087
PRR12	0	genome.wustl.edu	37	19	50124783	50124783	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	50124783	50124783	C	T	SNP	PRR12	ENST00000418929	human	ensembl	74_37	+1	novel	silent	c.5625	p.D1875	1.000	NULL	NULL	-	no_errors	PRR12	HGNC	ENSG00000126464				26	0	0	13	4	23.5294
KDM4B	0	genome.wustl.edu	37	19	5047625	5047625	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	5047625	5047625	G	A	SNP	KDM4B	ENST00000159111	human	ensembl	74_37	+1	known	missense	c.571	p.E191K	1.000	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4B	HGNC	ENSG00000127663				93	0	0	67	17	20.2381
VRK3	0	genome.wustl.edu	37	19	50482461	50482461	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	50482461	50482461	T	C	SNP	VRK3	ENST00000316763	human	ensembl	74_37	-1	known	missense	c.1315	p.T439A	0.000	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	VRK3	HGNC	ENSG00000105053				61	0	0	35	6	14.6341
NAPSA	0	genome.wustl.edu	37	19	50864954	50864954	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	50864954	50864954	C	T	SNP	NAPSA	ENST00000253719	human	ensembl	74_37	-1	known	missense	c.434	p.R145Q	0.998	pfam_Aspartic_peptidase,superfamily_Peptidase_aspartic_dom	pfam_Aspartic_peptidase,superfamily_Peptidase_aspartic_dom,prints_Aspartic_peptidase	-	no_errors	NAPSA	HGNC	ENSG00000131400				111	0	0	82	13	13.6842
SPIB	0	genome.wustl.edu	37	19	50926203	50926203	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	50926203	50926203	A	G	SNP	SPIB	ENST00000595883	human	ensembl	74_37	+1	known	missense	c.248	p.Y83C	1.000	NULL	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	SPIB	HGNC	ENSG00000269404				45	0	0	17	3	15
LIM2	0	genome.wustl.edu	37	19	51883795	51883795	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	51883795	51883795	G	T	SNP	LIM2	ENST00000221973	human	ensembl	74_37	-1	known	missense	c.550	p.L184M	1.000	pfam_PMP22/EMP/MP20/Claudin,prints_PMP22_EMP_MP20	pfam_PMP22/EMP/MP20/Claudin,prints_LMIP,prints_PMP22_EMP_MP20	-	no_errors	LIM2	HGNC	ENSG00000105370				178	0	0	118	24	16.9014
PTPRS	0	genome.wustl.edu	37	19	5219994	5219994	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	5219994	5219994	G	A	SNP	PTPRS	ENST00000372412	human	ensembl	74_37	-1	known	missense	c.3724	p.R1242C	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom	-	no_errors	PTPRS	HGNC	ENSG00000105426				55	0	0	46	8	14.8148
FPR3	0	genome.wustl.edu	37	19	52328045	52328045	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	52328045	52328045	G	A	SNP	FPR3	ENST00000339223	human	ensembl	74_37	+1	known	silent	c.1044	p.T348	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Formyl_pep_rcpt,prints_GPCR_Rhodpsn,prints_Anphylx_rcpt	-	no_errors	FPR3	HGNC	ENSG00000187474				30	0	0	33	5	13.1579
ZNF350	0	genome.wustl.edu	37	19	52471832	52471832	+	Silent	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	52471832	52471832	T	C	SNP	ZNF350	ENST00000243644	human	ensembl	74_37	-1	known	silent	c.237	p.S79	0.953	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF350	HGNC	ENSG00000256683				87	0	0	58	12	17.1429
PPP2R1A	0	genome.wustl.edu	37	19	52719049	52719049	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	52719049	52719049	G	A	SNP	PPP2R1A	ENST00000322088	human	ensembl	74_37	+1	known	silent	c.825	p.G275	0.992	superfamily_ARM-type_fold,pfscan_HEAT_type_2	pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	PPP2R1A	HGNC	ENSG00000105568				73	0	0	54	6	10
ZNF331	0	genome.wustl.edu	37	19	54080491	54080491	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	54080491	54080491	G	A	SNP	ZNF331	ENST00000253144	human	ensembl	74_37	+1	known	missense	c.677	p.R226H	0.005	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF331	HGNC	ENSG00000130844				98	0	0	83	24	22.4299
MIR371A	0	genome.wustl.edu	37	19	54290948	54290948	+	RNA	SNP	G	G	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	54290948	54290948	G	T	SNP	MIR371A	ENST00000362161	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR371A	HGNC	ENSG00000199031				32	0	0	32	4	11.1111
VSTM1	0	genome.wustl.edu	37	19	54567029	54567029	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	54567029	54567029	C	T	SNP	VSTM1	ENST00000338372	human	ensembl	74_37	-1	known	missense	c.3	p.M1I	0.169	NULL	smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	VSTM1	HGNC	ENSG00000189068				123	0	0	87	15	14.7059
LILRB4	0	genome.wustl.edu	37	19	55177749	55177749	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	55177749	55177749	C	T	SNP	LILRB4	ENST00000270452	human	ensembl	74_37	+1	known	silent	c.933	p.D311	0.022	NULL	pfam_Immunoglobulin,pfscan_Ig-like_dom	-	no_errors	LILRB4	HGNC	ENSG00000186818				45	0	0	34	11	24.4444
NLRP2	0	genome.wustl.edu	37	19	55481397	55481397	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	55481397	55481397	C	T	SNP	NLRP2	ENST00000448584	human	ensembl	74_37	+1	known	missense	c.14	p.A5V	0.000	superfamily_DEATH-like_dom,pfscan_DAPIN	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP2	HGNC	ENSG00000022556				79	0	0	54	9	14.2857
ZNF835	0	genome.wustl.edu	37	19	57176390	57176390	+	Silent	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	57176390	57176390	T	C	SNP	ZNF835	ENST00000537055	human	ensembl	74_37	-1	known	silent	c.177	p.R59	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF835	HGNC	ENSG00000127903				23	0	0	16	4	20
ZIM2	0	genome.wustl.edu	37	19	57286130	57286130	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	57286130	57286130	C	T	SNP	ZIM2	ENST00000221722	human	ensembl	74_37	-1	known	missense	c.1510	p.G504S	0.142	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZIM2	HGNC	ENSG00000269699				74	0	0	70	13	15.6627
ZNF805	0	genome.wustl.edu	37	19	57765977	57765977	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	57765977	57765977	T	C	SNP	ZNF805	ENST00000414468	human	ensembl	74_37	+1	known	missense	c.1790	p.V597A	0.871	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF805	HGNC	ENSG00000204524				45	0	0	41	7	14.5833
ZNF543	0	genome.wustl.edu	37	19	57839233	57839233	+	Silent	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	57839233	57839233	T	C	SNP	ZNF543	ENST00000321545	human	ensembl	74_37	+1	known	silent	c.403	p.L135	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF543	HGNC	ENSG00000178229				73	0	0	53	12	18.4615
ZNF749	0	genome.wustl.edu	37	19	57956447	57956447	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	57956447	57956447	A	G	SNP	ZNF749	ENST00000334181	human	ensembl	74_37	+1	known	missense	c.1931	p.E644G	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF749	HGNC	ENSG00000186230				84	0	0	71	7	8.97436
ZNF772	0	genome.wustl.edu	37	19	57985255	57985255	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	57985255	57985255	C	A	SNP	ZNF772	ENST00000343280	human	ensembl	74_37	-1	known	missense	c.857	p.R286I	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF772	HGNC	ENSG00000197128				119	0	0	87	25	22.3214
ZNF552	0	genome.wustl.edu	37	19	58319993	58319993	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	58319993	58319993	G	T	SNP	ZNF552	ENST00000391701	human	ensembl	74_37	-1	known	missense	c.639	p.S213R	0.004	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF552	HGNC	ENSG00000178935				89	0	0	63	16	20.2532
ZNF606	0	genome.wustl.edu	37	19	58490096	58490096	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	58490096	58490096	G	A	SNP	ZNF606	ENST00000341164	human	ensembl	74_37	-1	known	missense	c.1952	p.P651L	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF606	HGNC	ENSG00000166704				89	0	0	83	10	10.7527
ZSCAN1	0	genome.wustl.edu	37	19	58564966	58564966	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	58564966	58564966	C	T	SNP	ZSCAN1	ENST00000282326	human	ensembl	74_37	+1	known	silent	c.774	p.S258	0.000	NULL	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN1	HGNC	ENSG00000152467				38	0	0	19	5	20.8333
ZNF274	0	genome.wustl.edu	37	19	58724502	58724502	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	58724502	58724502	C	T	SNP	ZNF274	ENST00000326804	human	ensembl	74_37	+1	known	missense	c.1952	p.T651I	0.001	NULL	pfam_Krueppel-associated_box,pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF274	HGNC	ENSG00000171606				86	0	0	75	25	25
ZBTB45	0	genome.wustl.edu	37	19	59028801	59028801	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	59028801	59028801	C	T	SNP	ZBTB45	ENST00000354590	human	ensembl	74_37	-1	known	silent	c.240	p.V80	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB45	HGNC	ENSG00000119574				39	0	0	32	8	20
ZBTB45	0	genome.wustl.edu	37	19	59028965	59028965	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	59028965	59028965	G	A	SNP	ZBTB45	ENST00000354590	human	ensembl	74_37	-1	known	nonsense	c.76	p.Q26*	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB45	HGNC	ENSG00000119574				51	0	0	37	8	17.7778
ACSBG2	0	genome.wustl.edu	37	19	6183243	6183243	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	6183243	6183243	C	T	SNP	ACSBG2	ENST00000252669	human	ensembl	74_37	+1	known	missense	c.1282	p.P428S	0.978	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSBG2	HGNC	ENSG00000130377				68	0	0	41	10	19.6078
SLC25A23	0	genome.wustl.edu	37	19	6454018	6454018	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	6454018	6454018	C	T	SNP	SLC25A23	ENST00000264088	human	ensembl	74_37	-1	known	missense	c.1018	p.A340T	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A23	HGNC	ENSG00000125648				38	0	0	18	4	18.1818
GPR108	0	genome.wustl.edu	37	19	6732509	6732509	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	6732509	6732509	C	T	SNP	GPR108	ENST00000264080	human	ensembl	74_37	-1	known	missense	c.985	p.V329I	0.998	pfam_TM_rcpt_euk	pfam_TM_rcpt_euk	-	no_errors	GPR108	HGNC	ENSG00000125734				47	0	0	29	5	14.7059
VAV1	0	genome.wustl.edu	37	19	6821674	6821674	+	Silent	SNP	C	C	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	6821674	6821674	C	A	SNP	VAV1	ENST00000602142	human	ensembl	74_37	+1	known	silent	c.363	p.A121	0.996	superfamily_CH-domain	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,pfam_CAMSAP_CH,pfam_SH2,pfam_CH-domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,smart_SH2,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain,prints_SH3_domain,prints_SH2,prints_SM22_calponin	-	no_errors	VAV1	HGNC	ENSG00000141968				73	0	0	55	10	15.3846
PTBP1	0	genome.wustl.edu	37	19	810550	810550	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	810550	810550	G	A	SNP	PTBP1	ENST00000356948	human	ensembl	74_37	+1	known	missense	c.1471	p.V491I	0.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP-L_PTB	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP-L_PTB	-	no_errors	PTBP1	HGNC	ENSG00000011304				58	0	0	32	4	11.1111
PRTN3	0	genome.wustl.edu	37	19	847857	847857	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	847857	847857	T	C	SNP	PRTN3	ENST00000234347	human	ensembl	74_37	+1	known	missense	c.659	p.V220A	0.007	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	PRTN3	HGNC	ENSG00000196415				19	0	0	7	4	36.3636
MUC16	0	genome.wustl.edu	37	19	9011368	9011368	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	9011368	9011368	T	G	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.38865	p.K12955N	0.553	smart_SEA_dom	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				254	0	0	180	56	23.7288
MUC16	0	genome.wustl.edu	37	19	9087335	9087335	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	9087335	9087335	T	C	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.4480	p.T1494A	0.003	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				242	0	0	214	29	11.9342
OR7D2	0	genome.wustl.edu	37	19	9296531	9296531	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	9296531	9296531	C	T	SNP	OR7D2	ENST00000344248	human	ensembl	74_37	+1	known	missense	c.74	p.P25L	0.622	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR7D2	HGNC	ENSG00000188000				79	0	0	58	14	19.4444
OLFM2	0	genome.wustl.edu	37	19	9965414	9965414	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	9965414	9965414	G	A	SNP	OLFM2	ENST00000264833	human	ensembl	74_37	-1	known	silent	c.813	p.H271	0.998	pfam_Olfac-like,superfamily_Quinonprotein_ADH-like_supfam,smart_Olfac-like,pfscan_Olfac-like	pfam_Olfac-like,pfam_Noelin-1,superfamily_Quinonprotein_ADH-like_supfam,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFM2	HGNC	ENSG00000105088				18	0	0	11	7	38.8889
NOL10	0	genome.wustl.edu	37	2	10729712	10729712	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	10729712	10729712	G	A	SNP	NOL10	ENST00000381685	human	ensembl	74_37	-1	known	missense	c.1588	p.R530C	0.002	NULL	pfam_NUC153,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	NOL10	HGNC	ENSG00000115761				27	0	0	22	5	18.5185
GCC2	0	genome.wustl.edu	37	2	109088540	109088540	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	109088540	109088540	C	T	SNP	GCC2	ENST00000309863	human	ensembl	74_37	+1	known	nonsense	c.2755	p.R919*	0.995	NULL	pfam_GRIP,superfamily_GRIP,superfamily_tRNA-bd_arm,smart_GRIP,pfscan_GRIP	-	no_errors	GCC2	HGNC	ENSG00000135968				119	0	0	80	18	18.3673
BUB1	0	genome.wustl.edu	37	2	111430296	111430296	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	111430296	111430296	G	T	SNP	BUB1	ENST00000302759	human	ensembl	74_37	-1	known	missense	c.364	p.L122I	0.153	pfam_Mad3_BUB1_I,smart_Mad3_BUB1_I	pfam_Mad3_BUB1_I,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Mad3_BUB1_I,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	BUB1	HGNC	ENSG00000169679				92	0	0	68	14	17.0732
ZC3H6	0	genome.wustl.edu	37	2	113080379	113080379	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	113080379	113080379	G	A	SNP	ZC3H6	ENST00000343936	human	ensembl	74_37	+1	known	missense	c.1240	p.D414N	0.991	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H6	HGNC	ENSG00000188177				130	0	0	123	26	17.4497
SLC20A1	0	genome.wustl.edu	37	2	113414767	113414767	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	113414767	113414767	G	A	SNP	SLC20A1	ENST00000272542	human	ensembl	74_37	+1	known	missense	c.727	p.A243T	1.000	pfam_Phos_transporter	pfam_Phos_transporter	-	no_errors	SLC20A1	HGNC	ENSG00000144136				93	0	0	81	21	20.5882
DPP10	0	genome.wustl.edu	37	2	116525877	116525877	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	116525877	116525877	A	G	SNP	DPP10	ENST00000393147	human	ensembl	74_37	+1	known	missense	c.1130	p.E377G	1.000	pfam_Peptidase_S9B	pfam_Peptidase_S9B,pfam_Peptidase_S9	-	no_errors	DPP10	HGNC	ENSG00000175497				47	0	0	28	9	24.3243
GREB1	0	genome.wustl.edu	37	2	11758537	11758537	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	11758537	11758537	C	T	SNP	GREB1	ENST00000234142	human	ensembl	74_37	+1	known	missense	c.3536	p.P1179L	0.000	NULL	superfamily_P-loop_NTPase	-	no_errors	GREB1	HGNC	ENSG00000196208				17	0	0	11	3	21.4286
GREB1	0	genome.wustl.edu	37	2	11773069	11773069	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	11773069	11773069	G	A	SNP	GREB1	ENST00000234142	human	ensembl	74_37	+1	known	missense	c.4871	p.R1624Q	1.000	NULL	superfamily_P-loop_NTPase	-	no_errors	GREB1	HGNC	ENSG00000196208				60	0	0	26	13	33.3333
GLI2	0	genome.wustl.edu	37	2	121747438	121747438	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	121747438	121747438	C	T	SNP	GLI2	ENST00000361492	human	ensembl	74_37	+1	known	silent	c.3948	p.H1316	0.020	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI2	HGNC	ENSG00000074047				25	0	0	20	3	13.0435
CNTNAP5	0	genome.wustl.edu	37	2	125405387	125405387	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	125405387	125405387	G	A	SNP	CNTNAP5	ENST00000431078	human	ensembl	74_37	+1	known	silent	c.1926	p.V642	0.010	NULL	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP5	HGNC	ENSG00000155052				27	0	0	22	4	15.3846
WDR33	0	genome.wustl.edu	37	2	128466300	128466300	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	128466300	128466300	G	A	SNP	WDR33	ENST00000322313	human	ensembl	74_37	-1	known	silent	c.3732	p.H1244	1.000	NULL	pfam_WD40_repeat,pfam_Collagen,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR33	HGNC	ENSG00000136709				77	0	0	77	11	12.5
SMPD4	0	genome.wustl.edu	37	2	130912720	130912720	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	130912720	130912720	G	A	SNP	SMPD4	ENST00000409031	human	ensembl	74_37	-1	known	nonsense	c.1519	p.R507*	1.000	NULL	NULL	-	no_errors	SMPD4	HGNC	ENSG00000136699				49	0	0	39	10	20.4082
CCDC115	0	genome.wustl.edu	37	2	131099770	131099770	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	131099770	131099770	C	T	SNP	CCDC115	ENST00000437688	human	ensembl	74_37	-1	known	silent	c.33	p.V11	0.001	NULL	NULL	-	no_errors	CCDC115	HGNC	ENSG00000136710				16	0	0	11	4	26.6667
ANKRD30BL	0	genome.wustl.edu	37	2	132914967	132914967	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	132914967	132914967	C	T	SNP	ANKRD30BL	ENST00000295181	human	ensembl	74_37	-1	known	missense	c.248	p.G83D	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD30BL	HGNC	ENSG00000163046				31	0	0	15	5	25
LRP1B	0	genome.wustl.edu	37	2	141200145	141200145	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	141200145	141200145	G	A	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.10342	p.H3448Y	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				85	0	0	103	14	11.9658
LYPD6B	0	genome.wustl.edu	37	2	150069635	150069635	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	150069635	150069635	C	T	SNP	LYPD6B	ENST00000280115	human	ensembl	74_37	+1	known	missense	c.458	p.T153M	0.995	NULL	NULL	-	no_errors	LYPD6B	HGNC	ENSG00000150556				139	0	0	125	19	13.1944
NEB	0	genome.wustl.edu	37	2	152501056	152501056	+	Silent	SNP	T	T	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	152501056	152501056	T	G	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	silent	c.7570	p.R2524	1.000	pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091				79	0	0	73	19	20.6522
KCNJ3	0	genome.wustl.edu	37	2	155555583	155555583	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	155555583	155555583	C	T	SNP	KCNJ3	ENST00000295101	human	ensembl	74_37	+1	known	missense	c.296	p.A99V	1.000	pfam_K_chnl_inward-rec_Kir,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir3.1,prints_K_chnl_inward-rec_Kir	-	no_errors	KCNJ3	HGNC	ENSG00000162989				82	0	0	58	13	18.3099
NBAS	0	genome.wustl.edu	37	2	15614225	15614225	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	15614225	15614225	C	T	SNP	NBAS	ENST00000281513	human	ensembl	74_37	-1	known	missense	c.1565	p.R522H	1.000	NULL	pfam_Sec39,superfamily_Quino_amine_DH_bsu	-	no_errors	NBAS	HGNC	ENSG00000151779				107	0	0	81	14	14.7368
NBAS	0	genome.wustl.edu	37	2	15614424	15614424	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	15614424	15614424	G	A	SNP	NBAS	ENST00000281513	human	ensembl	74_37	-1	known	nonsense	c.1366	p.R456*	0.998	NULL	pfam_Sec39,superfamily_Quino_amine_DH_bsu	-	no_errors	NBAS	HGNC	ENSG00000151779				24	0	0	22	5	18.5185
GPD2	0	genome.wustl.edu	37	2	157407127	157407127	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	157407127	157407127	C	T	SNP	GPD2	ENST00000310454	human	ensembl	74_37	+1	known	silent	c.840	p.D280	0.999	pfam_FAD-dep_OxRdtase	pfam_FAD-dep_OxRdtase,pfam_FAD_bind_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_G3P_DH_FAD-dep	-	no_errors	GPD2	HGNC	ENSG00000115159				73	0	0	73	12	14.1176
ITGB6	0	genome.wustl.edu	37	2	160993949	160993949	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	160993949	160993949	G	A	SNP	ITGB6	ENST00000283249	human	ensembl	74_37	-1	known	silent	c.1656	p.C552	0.886	pirsf_Integrin_bsu,pfam_EGF_extracell	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_cyt_dom,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB6	HGNC	ENSG00000115221				76	0	0	60	12	16.6667
FIGN	0	genome.wustl.edu	37	2	164466900	164466900	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	164466900	164466900	G	T	SNP	FIGN	ENST00000333129	human	ensembl	74_37	-1	known	missense	c.1442	p.P481H	1.000	superfamily_P-loop_NTPase	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	FIGN	HGNC	ENSG00000182263				67	0	0	72	5	6.49351
COBLL1	0	genome.wustl.edu	37	2	165557205	165557205	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	165557205	165557205	C	T	SNP	COBLL1	ENST00000194871	human	ensembl	74_37	-1	known	silent	c.1602	p.V534	0.324	NULL	pfam_Cordon-bleu_ubiquitin_domain,pfscan_WH2_dom	-	no_errors	COBLL1	HGNC	ENSG00000082438				151	0	0	114	17	12.9771
SCN2A	0	genome.wustl.edu	37	2	166223735	166223735	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	166223735	166223735	C	T	SNP	SCN2A	ENST00000283256	human	ensembl	74_37	+1	known	missense	c.3529	p.R1177W	0.989	pfam_Na_trans_assoc	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531				54	0	0	47	7	12.963
XIRP2	0	genome.wustl.edu	37	2	168114392	168114392	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	168114392	168114392	G	A	SNP	XIRP2	ENST00000420519	human	ensembl	74_37	+1	known	missense	c.1435	p.G479R	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	XIRP2	HGNC	ENSG00000163092				56	0	0	49	11	18.3333
UBR3	0	genome.wustl.edu	37	2	170806482	170806482	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	170806482	170806482	G	A	SNP	UBR3	ENST00000272793	human	ensembl	74_37	+1	known	missense	c.3452	p.R1151H	1.000	NULL	pfam_Znf_N-recognin,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR3	HGNC	ENSG00000144357				106	0	0	88	18	16.9811
MYO3B	0	genome.wustl.edu	37	2	171243767	171243767	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	171243767	171243767	C	T	SNP	MYO3B	ENST00000334231	human	ensembl	74_37	+1	known	missense	c.1553	p.A518V	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3B	HGNC	ENSG00000071909				97	0	0	85	19	18.2692
TTN	0	genome.wustl.edu	37	2	179398768	179398768	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	179398768	179398768	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.94870	p.A31624T	1.000	pfam_Ig_I-set,superfamily_Kinase-like_dom,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				71	0	0	53	8	13.1148
TTN	0	genome.wustl.edu	37	2	179424439	179424439	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	179424439	179424439	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.78716	p.R26239H	0.079	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				160	0	0	129	36	21.8182
TTN	0	genome.wustl.edu	37	2	179453540	179453540	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	179453540	179453540	T	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.55208	p.E18403G	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				78	0	0	48	12	20
TTN	0	genome.wustl.edu	37	2	179454027	179454027	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	179454027	179454027	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.54721	p.A18241T	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				149	0	0	121	34	21.9355
TTN	0	genome.wustl.edu	37	2	179587174	179587174	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	179587174	179587174	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.18608	p.P6203L	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				115	0	0	89	19	17.5926
TTN	0	genome.wustl.edu	37	2	179594285	179594285	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	179594285	179594285	T	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.14866	p.T4956A	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				144	0	0	122	10	7.57576
ITGA4	0	genome.wustl.edu	37	2	182339944	182339944	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	182339944	182339944	C	T	SNP	ITGA4	ENST00000397033	human	ensembl	74_37	+1	known	missense	c.485	p.T162I	0.588	NULL	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA4	HGNC	ENSG00000115232				111	0	0	116	28	19.4444
ITGA4	0	genome.wustl.edu	37	2	182399098	182399098	+	Splice_Site	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	182399098	182399098	G	A	SNP	ITGA4	ENST00000397033	human	ensembl	74_37	+1	known	splice_site	c.2883+1	e26+1	1.000	-	-	-	no_errors	ITGA4	HGNC	ENSG00000115232				37	0	0	38	6	13.6364
PDE1A	0	genome.wustl.edu	37	2	183129093	183129093	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	183129093	183129093	G	A	SNP	PDE1A	ENST00000456212	human	ensembl	74_37	-1	known	silent	c.150	p.V50	0.000	NULL	pfam_PDEase_catalytic_dom,pfam_PDEase_N,superfamily_GRIP,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE1A	HGNC	ENSG00000115252				74	0	0	74	11	12.9412
NT5C1B	0	genome.wustl.edu	37	2	18765854	18765854	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	18765854	18765854	C	T	SNP	NT5C1B	ENST00000359846	human	ensembl	74_37	-1	known	missense	c.829	p.D277N	0.029	NULL	pfam_5-nucleotidase	-	no_errors	NT5C1B	HGNC	ENSG00000185013				24	0	0	10	4	28.5714
DNAH7	0	genome.wustl.edu	37	2	196636411	196636411	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	196636411	196636411	C	T	SNP	DNAH7	ENST00000312428	human	ensembl	74_37	-1	known	silent	c.11406	p.S3802	0.854	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_hand_dom	-	no_errors	DNAH7	HGNC	ENSG00000118997				158	0	0	136	23	14.4654
FZD7	0	genome.wustl.edu	37	2	202899989	202899989	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	202899989	202899989	C	A	SNP	FZD7	ENST00000286201	human	ensembl	74_37	+1	known	missense	c.619	p.P207T	0.996	NULL	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD7	HGNC	ENSG00000155760				18	0	0	10	4	28.5714
FZD7	0	genome.wustl.edu	37	2	202900525	202900525	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	202900525	202900525	G	A	SNP	FZD7	ENST00000286201	human	ensembl	74_37	+1	known	silent	c.1155	p.A385	0.989	pfam_Frizzled,pfscan_GPCR_2-like,prints_Frizzled	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD7	HGNC	ENSG00000155760				52	0	0	31	11	26.1905
WDR12	0	genome.wustl.edu	37	2	203772679	203772679	+	Silent	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	203772679	203772679	A	G	SNP	WDR12	ENST00000261015	human	ensembl	74_37	-1	known	silent	c.45	p.Y15	0.575	pfam_NLE	pfam_WD40_repeat,pfam_NLE,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR12	HGNC	ENSG00000138442				45	0	0	43	10	18.8679
RAPH1	0	genome.wustl.edu	37	2	204354422	204354422	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	204354422	204354422	T	A	SNP	RAPH1	ENST00000374493	human	ensembl	74_37	-1	known	missense	c.617	p.N206I	1.000	NULL	pfam_Ras-assoc,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Ras-assoc,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,prints_Paxillin	-	no_errors	RAPH1	HGNC	ENSG00000173166				127	1	0.78125	107	19	15.0794
PARD3B	0	genome.wustl.edu	37	2	205978267	205978267	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	205978267	205978267	C	G	SNP	PARD3B	ENST00000406610	human	ensembl	74_37	+1	known	missense	c.646	p.H216D	1.000	superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_DUF3534,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PARD3B	HGNC	ENSG00000116117				53	0	0	44	10	18.5185
PARD3B	0	genome.wustl.edu	37	2	205983711	205983711	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	205983711	205983711	C	T	SNP	PARD3B	ENST00000406610	human	ensembl	74_37	+1	known	silent	c.747	p.H249	0.083	superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_DUF3534,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PARD3B	HGNC	ENSG00000116117				80	0	0	69	17	19.7674
NRP2	0	genome.wustl.edu	37	2	206587398	206587398	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	206587398	206587398	C	T	SNP	NRP2	ENST00000360409	human	ensembl	74_37	+1	known	silent	c.630	p.Y210	0.977	pirsf_Neuropilin,pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pirsf_Neuropilin,pfam_CUB_dom,pfam_Coagulation_fac_5/8-C_type_dom,pfam_MAM_dom,pfam_Neuropilin1_C,superfamily_Galactose-bd-like,superfamily_CUB_dom,superfamily_ConA-like_lec_gl_sf,smart_CUB_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_MAM_dom,prints_MAM_dom,pfscan_CUB_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_MAM_dom	-	no_errors	NRP2	HGNC	ENSG00000118257				67	0	0	50	4	7.40741
INO80D	0	genome.wustl.edu	37	2	206870106	206870106	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	206870106	206870106	T	C	SNP	INO80D	ENST00000403263	human	ensembl	74_37	-1	known	missense	c.2070	p.I690M	1.000	NULL	NULL	-	no_errors	INO80D	HGNC	ENSG00000114933				122	0	0	96	6	5.88235
CRYGC	0	genome.wustl.edu	37	2	208993108	208993108	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	208993108	208993108	C	T	SNP	CRYGC	ENST00000282141	human	ensembl	74_37	-1	known	missense	c.344	p.R115H	1.000	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYGC	HGNC	ENSG00000163254				59	0	0	48	13	21.3115
PTH2R	0	genome.wustl.edu	37	2	209308074	209308074	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	209308074	209308074	C	T	SNP	PTH2R	ENST00000272847	human	ensembl	74_37	+1	known	nonsense	c.511	p.R171*	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	PTH2R	HGNC	ENSG00000144407				50	0	0	55	11	16.6667
MAP2	0	genome.wustl.edu	37	2	210559705	210559705	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	210559705	210559705	G	A	SNP	MAP2	ENST00000360351	human	ensembl	74_37	+1	known	silent	c.2811	p.A937	0.000	pfam_MAP2_projctn	pfam_MAP2_projctn,pfam_MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018				88	0	0	69	12	14.8148
UNC80	0	genome.wustl.edu	37	2	210699692	210699692	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	210699692	210699692	G	A	SNP	UNC80	ENST00000439458	human	ensembl	74_37	+1	known	missense	c.2999	p.C1000Y	1.000	NULL	NULL	-	no_errors	UNC80	HGNC	ENSG00000144406				15	0	0	8	3	27.2727
CPS1	0	genome.wustl.edu	37	2	211457621	211457621	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	211457621	211457621	A	G	SNP	CPS1	ENST00000430249	human	ensembl	74_37	+1	known	missense	c.1123	p.K375E	1.000	pfam_GATASE,tigrfam_CarbamoylP_synth_ssu	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_CarbamoylP_synth_lsu_oligo,pfam_GATASE,pfam_CarbamoylP_synth_lsu_N,pfam_MGS-like_dom,pfam_ATP-grasp_carboxylate-amine,pfam_Dala_Dala_lig_C,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_dom,superfamily_MGS-like_dom,smart_MGS-like_dom,pfscan_ATP-grasp,prints_CbamoylP_synth_lsu_CPSase_dom,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu	-	no_errors	CPS1	HGNC	ENSG00000021826				82	0	0	62	10	13.8889
CPS1	0	genome.wustl.edu	37	2	211540487	211540487	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	211540487	211540487	C	T	SNP	CPS1	ENST00000430249	human	ensembl	74_37	+1	known	silent	c.4215	p.N1405	0.993	pfam_MGS-like_dom,superfamily_MGS-like_dom,smart_MGS-like_dom,tigrfam_CarbamoylP_synth_lsu	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_CarbamoylP_synth_lsu_oligo,pfam_GATASE,pfam_CarbamoylP_synth_lsu_N,pfam_MGS-like_dom,pfam_ATP-grasp_carboxylate-amine,pfam_Dala_Dala_lig_C,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_dom,superfamily_MGS-like_dom,smart_MGS-like_dom,pfscan_ATP-grasp,prints_CbamoylP_synth_lsu_CPSase_dom,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu	-	no_errors	CPS1	HGNC	ENSG00000021826				67	0	0	40	10	20
IKZF2	0	genome.wustl.edu	37	2	213921663	213921663	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	213921663	213921663	T	G	SNP	IKZF2	ENST00000434687	human	ensembl	74_37	-1	known	missense	c.300	p.Q100H	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	IKZF2	HGNC	ENSG00000030419				84	0	0	74	12	13.9535
ABCA12	0	genome.wustl.edu	37	2	215876354	215876354	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	215876354	215876354	C	T	SNP	ABCA12	ENST00000272895	human	ensembl	74_37	-1	known	missense	c.2141	p.R714Q	0.004	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA12	HGNC	ENSG00000144452				117	0	0	97	20	17.094
FN1	0	genome.wustl.edu	37	2	216273121	216273121	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	216273121	216273121	G	A	SNP	FN1	ENST00000354785	human	ensembl	74_37	-1	known	silent	c.2328	p.N776	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibronectin_type1,pfam_FN_type2_col-bd,superfamily_Kringle-like,superfamily_Fibronectin_type3,smart_Fibronectin_type1,smart_FN_type2_col-bd,smart_Fibronectin_type3,pfscan_Fibronectin_type1,pfscan_FN_type2_col-bd,pfscan_Fibronectin_type3	-	no_errors	FN1	HGNC	ENSG00000115414				71	0	0	45	8	15.0943
TNS1	0	genome.wustl.edu	37	2	218683462	218683462	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	218683462	218683462	G	A	SNP	TNS1	ENST00000171887	human	ensembl	74_37	-1	known	missense	c.3281	p.P1094L	0.998	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_dom,smart_Tyr_Pase_cat,smart_SH2,smart_PTB/PI_dom,pfscan_SH2,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS1	HGNC	ENSG00000079308				47	0	0	23	4	14.8148
CYP27A1	0	genome.wustl.edu	37	2	219676971	219676971	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	219676971	219676971	G	A	SNP	CYP27A1	ENST00000258415	human	ensembl	74_37	+1	known	missense	c.473	p.R158H	1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	-	no_errors	CYP27A1	HGNC	ENSG00000135929				84	0	0	55	7	11.2903
CCDC108	0	genome.wustl.edu	37	2	219893035	219893035	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	219893035	219893035	C	T	SNP	CCDC108	ENST00000341552	human	ensembl	74_37	-1	known	missense	c.1739	p.R580H	0.967	NULL	superfamily_PapD-like,pfscan_MSP_dom	-	no_errors	CCDC108	HGNC	ENSG00000181378				63	0	0	43	22	33.8462
ABCB6	0	genome.wustl.edu	37	2	220074986	220074986	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	220074986	220074986	C	T	SNP	ABCB6	ENST00000265316	human	ensembl	74_37	-1	known	missense	c.2386	p.V796I	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB6	HGNC	ENSG00000115657				72	0	0	53	10	15.873
PTPRN	0	genome.wustl.edu	37	2	220162661	220162661	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	220162661	220162661	G	A	SNP	PTPRN	ENST00000295718	human	ensembl	74_37	-1	known	silent	c.1833	p.R611	0.992	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Receptor_IA-2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRN	HGNC	ENSG00000054356				20	0	0	17	4	19.0476
INHA	0	genome.wustl.edu	37	2	220440169	220440169	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	220440169	220440169	G	A	SNP	INHA	ENST00000243786	human	ensembl	74_37	+1	known	missense	c.1022	p.R341H	1.000	pfam_TGF-b_C,smart_TGF-b_C,pirsf_Inhibin_asu_subgr,prints_Inhibin_asu	pfam_TGF-b_C,smart_TGF-b_C,pirsf_Inhibin_asu_subgr,prints_Inhibin_asu	-	no_errors	INHA	HGNC	ENSG00000123999				179	0	0	119	24	16.7832
WDFY1	0	genome.wustl.edu	37	2	224758993	224758993	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	224758993	224758993	G	A	SNP	WDFY1	ENST00000233055	human	ensembl	74_37	-1	known	silent	c.789	p.D263	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Znf_FYVE,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,smart_WD40_repeat,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDFY1	HGNC	ENSG00000085449				58	0	0	45	10	18.1818
DOCK10	0	genome.wustl.edu	37	2	225637874	225637874	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	225637874	225637874	C	A	SNP	DOCK10	ENST00000258390	human	ensembl	74_37	-1	known	missense	c.6204	p.K2068N	1.000	pfam_DOCK_C,superfamily_ARM-type_fold	pfam_DOCK_C,pfam_DOCK_C/D_N,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK10	HGNC	ENSG00000135905				43	0	0	31	9	22.5
SPHKAP	0	genome.wustl.edu	37	2	228883406	228883406	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	228883406	228883406	T	C	SNP	SPHKAP	ENST00000392056	human	ensembl	74_37	-1	known	missense	c.2164	p.K722E	0.953	NULL	pfam_AKAP_110_C	-	no_errors	SPHKAP	HGNC	ENSG00000153820				199	0	0	151	27	15.1685
SLC16A14	0	genome.wustl.edu	37	2	230923861	230923861	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	230923861	230923861	C	T	SNP	SLC16A14	ENST00000295190	human	ensembl	74_37	-1	known	missense	c.208	p.G70S	0.998	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A14	HGNC	ENSG00000163053				43	0	0	26	5	16.129
ALPI	0	genome.wustl.edu	37	2	233322294	233322294	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	233322294	233322294	G	A	SNP	ALPI	ENST00000295463	human	ensembl	74_37	+1	known	missense	c.668	p.R223H	0.963	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase,prints_Alkaline_phosphatase	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase,prints_Alkaline_phosphatase	-	no_errors	ALPI	HGNC	ENSG00000163295				92	0	0	49	7	12.5
HJURP	0	genome.wustl.edu	37	2	234750556	234750556	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	234750556	234750556	C	T	SNP	HJURP	ENST00000411486	human	ensembl	74_37	-1	known	missense	c.870	p.M290I	0.000	pfam_HJURP	pfam_HJURP,pfam_HJURP_C,pfam_Centromere_Scm3_N	-	no_errors	HJURP	HGNC	ENSG00000123485				116	0	0	76	10	11.6279
LRRFIP1	0	genome.wustl.edu	37	2	238666181	238666181	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	238666181	238666181	A	G	SNP	LRRFIP1	ENST00000308482	human	ensembl	74_37	+1	putative	missense	c.1214	p.K405R	1.000	superfamily_Prefoldin	pfam_Leu-rich_rep_flightless-int_pr,superfamily_Prefoldin	-	no_errors	LRRFIP1	HGNC	ENSG00000124831				25	0	0	12	3	20
ILKAP	0	genome.wustl.edu	37	2	239090722	239090722	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	239090722	239090722	C	T	SNP	ILKAP	ENST00000254654	human	ensembl	74_37	-1	known	missense	c.820	p.A274T	1.000	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	-	no_errors	ILKAP	HGNC	ENSG00000132323				197	0	0	171	38	18.1818
PRR21	0	genome.wustl.edu	37	2	240981288	240981288	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	240981288	240981288	G	C	SNP	PRR21	ENST00000408934	human	ensembl	74_37	-1	known	missense	c.1112	p.A371G	0.205	NULL	NULL	-	no_errors	PRR21	HGNC	ENSG00000221961				76	0	0	61	20	24.6914
ANKMY1	0	genome.wustl.edu	37	2	241463615	241463615	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	241463615	241463615	C	T	SNP	ANKMY1	ENST00000272972	human	ensembl	74_37	-1	known	missense	c.1252	p.G418R	0.000	superfamily_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_MORN,pfam_Znf_MYND,superfamily_Ankyrin_rpt-contain_dom,smart_MORN,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Znf_MYND	-	no_errors	ANKMY1	HGNC	ENSG00000144504				41	0	0	25	6	19.3548
KIF1A	0	genome.wustl.edu	37	2	241689869	241689869	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	241689869	241689869	C	T	SNP	KIF1A	ENST00000498729	human	ensembl	74_37	-1	known	missense	c.2954	p.R985H	1.000	NULL	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_Pleckstrin_homology,pfam_KIF1B,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,smart_Pleckstrin_homology,pfscan_FHA_dom,pfscan_Pleckstrin_homology,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1A	HGNC	ENSG00000130294				26	0	0	24	3	11.1111
KIF1A	0	genome.wustl.edu	37	2	241712648	241712648	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	241712648	241712648	G	A	SNP	KIF1A	ENST00000498729	human	ensembl	74_37	-1	known	missense	c.1063	p.R355C	1.000	superfamily_P-loop_NTPase,smart_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_Pleckstrin_homology,pfam_KIF1B,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,smart_Pleckstrin_homology,pfscan_FHA_dom,pfscan_Pleckstrin_homology,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1A	HGNC	ENSG00000130294				48	0	0	35	6	14.6341
KIF1A	0	genome.wustl.edu	37	2	241726674	241726674	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	241726674	241726674	G	A	SNP	KIF1A	ENST00000498729	human	ensembl	74_37	-1	known	silent	c.423	p.S141	0.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_Pleckstrin_homology,pfam_KIF1B,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,smart_Pleckstrin_homology,pfscan_FHA_dom,pfscan_Pleckstrin_homology,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1A	HGNC	ENSG00000130294				38	0	0	26	6	18.75
C2orf54	0	genome.wustl.edu	37	2	241831333	241831333	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	241831333	241831333	C	A	SNP	C2orf54	ENST00000307486	human	ensembl	74_37	-1	known	missense	c.24	p.W8C	0.002	NULL	NULL	-	no_errors	C2orf54	HGNC	ENSG00000172478				8	0	0	10	4	28.5714
MTERFD2	0	genome.wustl.edu	37	2	242039193	242039193	+	Silent	SNP	G	G	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	242039193	242039193	G	T	SNP	MTERFD2	ENST00000241527	human	ensembl	74_37	-1	known	silent	c.138	p.A46	0.015	NULL	pfam_Mit_transcrip_term-rel,smart_Mit_transcrip_term-rel	-	no_errors	MTERFD2	HGNC	ENSG00000122085				99	0	0	69	9	11.5385
PASK	0	genome.wustl.edu	37	2	242066171	242066171	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	242066171	242066171	G	A	SNP	PASK	ENST00000358649	human	ensembl	74_37	-1	known	missense	c.2159	p.T720M	0.397	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAS_fold,superfamily_Kinase-like_dom,superfamily_PAS,smart_PAS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAS,pfscan_Prot_kinase_dom,tigrfam_PAS	-	no_errors	PASK	HGNC	ENSG00000115687				55	0	0	42	7	14.2857
PASK	0	genome.wustl.edu	37	2	242066359	242066359	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	242066359	242066359	C	T	SNP	PASK	ENST00000358649	human	ensembl	74_37	-1	known	silent	c.1971	p.L657	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAS_fold,superfamily_Kinase-like_dom,superfamily_PAS,smart_PAS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAS,pfscan_Prot_kinase_dom,tigrfam_PAS	-	no_errors	PASK	HGNC	ENSG00000115687				121	0	0	109	17	13.4921
ANO7	0	genome.wustl.edu	37	2	242163537	242163537	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	242163537	242163537	C	T	SNP	ANO7	ENST00000274979	human	ensembl	74_37	+1	known	missense	c.2771	p.T924M	0.000	NULL	pfam_Anoctamin	-	no_errors	ANO7	HGNC	ENSG00000146205				39	0	0	27	4	12.9032
NCOA1	0	genome.wustl.edu	37	2	24927973	24927973	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	24927973	24927973	C	T	SNP	NCOA1	ENST00000348332	human	ensembl	74_37	+1	known	missense	c.968	p.A323V	1.000	superfamily_PAS,pirsf_Nuclear_rcpt_coactivator	pfam_DUF1518,pfam_SRC-1,pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_PAS_fold,superfamily_PAS,superfamily_Nuc_rcpt_coact,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NCOA1	HGNC	ENSG00000084676				72	0	0	62	13	17.3333
ASXL2	0	genome.wustl.edu	37	2	25966041	25966041	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	25966041	25966041	G	A	SNP	ASXL2	ENST00000435504	human	ensembl	74_37	-1	known	silent	c.3165	p.H1055	0.993	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL2	HGNC	ENSG00000143970				67	0	0	44	8	15.3846
KIF3C	0	genome.wustl.edu	37	2	26203385	26203385	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	26203385	26203385	G	A	SNP	KIF3C	ENST00000264712	human	ensembl	74_37	-1	known	silent	c.1402	p.L468	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF3C	HGNC	ENSG00000084731				74	0	0	54	10	15.625
GTF3C2	0	genome.wustl.edu	37	2	27566374	27566374	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	27566374	27566374	G	A	SNP	GTF3C2	ENST00000264720	human	ensembl	74_37	-1	known	silent	c.48	p.P16	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	GTF3C2	HGNC	ENSG00000115207				113	0	0	92	15	14.0187
PPM1G	0	genome.wustl.edu	37	2	27607889	27607889	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	27607889	27607889	C	T	SNP	PPM1G	ENST00000344034	human	ensembl	74_37	-1	known	missense	c.476	p.R159H	1.000	superfamily_PP2C-like_dom,smart_PP2C-like_dom	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	-	no_errors	PPM1G	HGNC	ENSG00000115241				140	0	0	88	19	17.757
FAM98A	0	genome.wustl.edu	37	2	33810305	33810305	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	33810305	33810305	G	A	SNP	FAM98A	ENST00000238823	human	ensembl	74_37	-1	known	silent	c.1095	p.G365	0.973	NULL	pfam_Uncharacterised_FAM98	-	no_errors	FAM98A	HGNC	ENSG00000119812				96	0	0	70	15	17.6471
CRIM1	0	genome.wustl.edu	37	2	36749338	36749338	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	36749338	36749338	C	T	SNP	CRIM1	ENST00000280527	human	ensembl	74_37	+1	known	silent	c.2310	p.D770	0.996	pfam_VWF_C,smart_VWF_C,pfscan_VWF_C	pfam_VWF_C,pfam_Antistasin-like,superfamily_Hirudin/antistatin,smart_IGFBP-like,smart_VWC_out,smart_VWF_C,pfscan_VWF_C	-	no_errors	CRIM1	HGNC	ENSG00000150938				114	0	0	79	29	26.8519
STON1-GTF2A1L	0	genome.wustl.edu	37	2	48873957	48873957	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	48873957	48873957	C	T	SNP	STON1-GTF2A1L	ENST00000309827	human	ensembl	74_37	+1	known	nonsense	c.2866	p.Q956*	0.004	pfam_TFIIA_asu/bsu	pfam_TFIIA_asu/bsu,pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,superfamily_TFIIA_b-brl,superfamily_TFIIA_a-hlx,pfscan_Clathrin_mu_C,pfscan_SHD	-	no_errors	STON1-GTF2A1L	HGNC	ENSG00000068781				64	0	0	57	7	10.9375
FSHR	0	genome.wustl.edu	37	2	49190038	49190038	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	49190038	49190038	A	G	SNP	FSHR	ENST00000406846	human	ensembl	74_37	-1	known	missense	c.1922	p.L641P	1.000	prints_Gphrmn_rcpt_fam	pfam_GPCR_Rhodpsn,pfam_GnHR_TM,pfam_LRR-contain_N,pfam_Leu-rich_rpt,smart_LRR-contain_N,pfscan_GPCR_Rhodpsn_7TM,prints_FSH_rcpt,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn,prints_TSH_rcpt	-	no_errors	FSHR	HGNC	ENSG00000170820				62	0	0	51	13	20.3125
USP34	0	genome.wustl.edu	37	2	61415812	61415812	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	61415812	61415812	G	A	SNP	USP34	ENST00000398571	human	ensembl	74_37	-1	known	missense	c.10066	p.R3356C	1.000	NULL	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	-	no_errors	USP34	HGNC	ENSG00000115464				72	0	0	55	9	14.0625
USP34	0	genome.wustl.edu	37	2	61508298	61508298	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	61508298	61508298	C	T	SNP	USP34	ENST00000398571	human	ensembl	74_37	-1	known	missense	c.5078	p.R1693H	0.999	NULL	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	-	no_errors	USP34	HGNC	ENSG00000115464				58	0	0	28	10	26.3158
CCT4	0	genome.wustl.edu	37	2	62099411	62099411	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	62099411	62099411	C	T	SNP	CCT4	ENST00000394440	human	ensembl	74_37	-1	known	missense	c.1297	p.A433T	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1,tigrfam_Chap_CCT_delta	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_delta	-	no_errors	CCT4	HGNC	ENSG00000115484				59	0	0	46	5	9.80392
SPRED2	0	genome.wustl.edu	37	2	65571870	65571870	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	65571870	65571870	G	A	SNP	SPRED2	ENST00000356388	human	ensembl	74_37	-1	known	nonsense	c.187	p.R63*	1.000	pfam_WH1/EVH1,smart_WH1/EVH1,pfscan_WH1/EVH1	pfam_Sprouty,pfam_WH1/EVH1,smart_WH1/EVH1,pfscan_WH1/EVH1	-	no_errors	SPRED2	HGNC	ENSG00000198369				39	0	0	28	4	12.5
ARHGAP25	0	genome.wustl.edu	37	2	69015041	69015041	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	69015041	69015041	A	G	SNP	ARHGAP25	ENST00000409202	human	ensembl	74_37	+1	known	missense	c.419	p.E140G	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP25	HGNC	ENSG00000163219				83	0	0	54	11	16.9231
DYSF	0	genome.wustl.edu	37	2	71755438	71755438	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	71755438	71755438	C	T	SNP	DYSF	ENST00000413539	human	ensembl	74_37	+1	known	silent	c.1284	p.A428	0.458	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_dom,superfamily_MFS_dom_general_subst_transpt,smart_C2_dom,smart_Peroxin/Ferlin,pfscan_C2_dom	-	no_errors	DYSF	HGNC	ENSG00000135636				31	0	0	33	6	15.3846
ALMS1	0	genome.wustl.edu	37	2	73717248	73717248	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	73717248	73717248	G	A	SNP	ALMS1	ENST00000264448	human	ensembl	74_37	+1	known	missense	c.8159	p.R2720Q	1.000	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127				142	1	0.699301	107	27	20.1493
DNAH6	0	genome.wustl.edu	37	2	84745152	84745152	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	84745152	84745152	C	T	SNP	DNAH6	ENST00000237449	human	ensembl	74_37	+1	known	nonsense	c.202	p.Q68*	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH6	HGNC	ENSG00000115423				14	0	0	19	3	13.6364
TRABD2A	0	genome.wustl.edu	37	2	85097639	85097639	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	85097639	85097639	G	T	SNP	TRABD2A	ENST00000409520	human	ensembl	74_37	-1	known	missense	c.379	p.L127M	1.000	NULL	NULL	-	no_errors	TRABD2A	HGNC	ENSG00000186854				54	0	0	42	14	25
C2orf68	0	genome.wustl.edu	37	2	85836566	85836566	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	85836566	85836566	C	T	SNP	C2orf68	ENST00000306336	human	ensembl	74_37	-1	known	missense	c.370	p.V124I	1.000	pfam_UPF0561	pfam_UPF0561	-	no_errors	C2orf68	HGNC	ENSG00000168887				264	0	0	239	28	10.4869
KDM3A	0	genome.wustl.edu	37	2	86705121	86705121	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	86705121	86705121	C	T	SNP	KDM3A	ENST00000312912	human	ensembl	74_37	+1	known	silent	c.2061	p.C687	1.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM3A	HGNC	ENSG00000115548				147	0	0	120	24	16.6667
TEKT4	0	genome.wustl.edu	37	2	95542378	95542378	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	95542378	95542378	G	A	SNP	TEKT4	ENST00000295201	human	ensembl	74_37	+1	known	missense	c.1172	p.R391H	0.958	pfam_Tektin	pfam_Tektin,prints_Tektin	-	no_errors	TEKT4	HGNC	ENSG00000163060				32	0	0	21	5	19.2308
CPSF3	0	genome.wustl.edu	37	2	9611523	9611523	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	9611523	9611523	C	T	SNP	CPSF3	ENST00000238112	human	ensembl	74_37	+1	known	silent	c.1908	p.S636	0.305	pfam_CPSF73-100_C	pfam_CPSF73-100_C,pfam_Beta_Casp,pfam_Beta-lactamas-like,pfam_RMMBL,smart_Beta-lactamas-like	-	no_errors	CPSF3	HGNC	ENSG00000119203				95	0	0	87	13	13
CNNM4	0	genome.wustl.edu	37	2	97475139	97475139	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	97475139	97475139	C	T	SNP	CNNM4	ENST00000377075	human	ensembl	74_37	+1	known	missense	c.2213	p.T738I	0.015	NULL	pfam_DUF21,pfam_CBS_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	-	no_errors	CNNM4	HGNC	ENSG00000158158				39	0	0	23	10	30.303
VWA3B	0	genome.wustl.edu	37	2	98928714	98928714	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	98928714	98928714	G	A	SNP	VWA3B	ENST00000477737	human	ensembl	74_37	+1	known	missense	c.3787	p.A1263T	0.000	NULL	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA3B	HGNC	ENSG00000168658				45	0	0	36	11	23.4043
CNGA3	0	genome.wustl.edu	37	2	98994199	98994199	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	98994199	98994199	G	A	SNP	CNGA3	ENST00000272602	human	ensembl	74_37	+1	known	missense	c.151	p.A51T	0.004	NULL	pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA3	HGNC	ENSG00000144191				25	0	0	14	4	22.2222
ZNF133	0	genome.wustl.edu	37	20	18295755	18295755	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	20	18295755	18295755	C	T	SNP	ZNF133	ENST00000396026	human	ensembl	74_37	+1	known	missense	c.269	p.P90L	0.102	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF133	HGNC	ENSG00000125846				99	0	0	95	13	12.037
CRNKL1	0	genome.wustl.edu	37	20	20016922	20016922	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	20	20016922	20016922	C	T	SNP	CRNKL1	ENST00000377340	human	ensembl	74_37	-1	known	missense	c.2464	p.A822T	1.000	NULL	pfam_HAT,pfam_Suf,smart_HAT,pfscan_TPR-contain_dom	-	no_errors	CRNKL1	HGNC	ENSG00000101343				85	0	0	87	17	16.3462
PAX1	0	genome.wustl.edu	37	20	21687619	21687619	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	20	21687619	21687619	C	T	SNP	PAX1	ENST00000398485	human	ensembl	74_37	+1	known	missense	c.830	p.A277V	0.922	NULL	pfam_Paired_dom,superfamily_Homeodomain-like,smart_Paired_dom,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX1	HGNC	ENSG00000125813				35	0	0	22	5	18.5185
TGM3	0	genome.wustl.edu	37	20	2308989	2308989	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	20	2308989	2308989	G	A	SNP	TGM3	ENST00000381458	human	ensembl	74_37	+1	known	silent	c.1311	p.T437	0.010	NULL	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM3	HGNC	ENSG00000125780				52	0	0	42	8	16
GGTLC1	0	genome.wustl.edu	37	20	23967095	23967095	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	20	23967095	23967095	C	T	SNP	GGTLC1	ENST00000278765	human	ensembl	74_37	-1	known	missense	c.154	p.A52T	1.000	pfam_GGT_peptidase,prints_GGT_peptidase	pfam_GGT_peptidase,prints_GGT_peptidase	-	no_errors	GGTLC1	HGNC	ENSG00000149435				41	0	0	19	6	24
ACSS1	0	genome.wustl.edu	37	20	24988241	24988241	+	RNA	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	20	24988241	24988241	C	T	SNP	ACSS1	ENST00000484396	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ACSS1	HGNC	ENSG00000154930				17	0	0	11	6	35.2941
PYGB	0	genome.wustl.edu	37	20	25239910	25239910	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	20	25239910	25239910	G	A	SNP	PYGB	ENST00000216962	human	ensembl	74_37	+1	known	missense	c.281	p.R94H	1.000	pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	-	no_errors	PYGB	HGNC	ENSG00000100994				73	0	0	48	14	22.5806
SNORD86	0	genome.wustl.edu	37	20	2636748	2636748	+	RNA	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	20	2636748	2636748	C	T	SNP	SNORD86	ENST00000391196	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	SNORD86	HGNC	ENSG00000212498				43	0	0	37	4	9.7561
PCED1A	0	genome.wustl.edu	37	20	2820491	2820491	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	20	2820491	2820491	G	A	SNP	PCED1A	ENST00000360652	human	ensembl	74_37	-1	known	missense	c.68	p.A23V	0.999	NULL	NULL	-	no_errors	PCED1A	HGNC	ENSG00000132635				78	0	0	78	7	8.23529
HM13	0	genome.wustl.edu	37	20	30136750	30136750	+	RNA	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	20	30136750	30136750	A	G	SNP	HM13	ENST00000460389	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	HM13	HGNC	ENSG00000101294				90	0	0	76	17	18.2796
SUN5	0	genome.wustl.edu	37	20	31590444	31590444	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	20	31590444	31590444	G	A	SNP	SUN5	ENST00000356173	human	ensembl	74_37	-1	known	missense	c.160	p.R54C	0.001	NULL	pfam_Sad1_UNC_C,superfamily_Galactose-bd-like	-	no_errors	SUN5	HGNC	ENSG00000167098				36	0	0	33	16	32.6531
NCOA6	0	genome.wustl.edu	37	20	33356268	33356268	+	Silent	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	20	33356268	33356268	T	C	SNP	NCOA6	ENST00000359003	human	ensembl	74_37	-1	known	silent	c.513	p.P171	1.000	NULL	NULL	-	no_errors	NCOA6	HGNC	ENSG00000198646				102	0	0	108	17	13.6
RBM39	0	genome.wustl.edu	37	20	34295045	34295045	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	20	34295045	34295045	T	C	SNP	RBM39	ENST00000253363	human	ensembl	74_37	-1	known	missense	c.1304	p.Q435R	1.000	smart_RRM_dom_euk,smart_RRM_dom,tigrfam_CC1_SF	pfam_RRM_dom,smart_RRM_dom,smart_RRM_dom_euk,pfscan_RRM_dom,tigrfam_CC1_SF	-	no_errors	RBM39	HGNC	ENSG00000131051				62	0	0	58	8	12.1212
TGM2	0	genome.wustl.edu	37	20	36770552	36770552	+	Silent	SNP	C	C	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	20	36770552	36770552	C	A	SNP	TGM2	ENST00000361475	human	ensembl	74_37	-1	known	silent	c.909	p.S303	0.046	pfam_Transglutaminase-like,smart_Transglutaminase-like	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM2	HGNC	ENSG00000198959				100	0	0	104	14	11.8644
SLC32A1	0	genome.wustl.edu	37	20	37357184	37357184	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	20	37357184	37357184	G	A	SNP	SLC32A1	ENST00000217420	human	ensembl	74_37	+1	known	missense	c.1480	p.V494I	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC32A1	HGNC	ENSG00000101438				20	0	0	19	10	34.4828
CHD6	0	genome.wustl.edu	37	20	40081539	40081539	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	20	40081539	40081539	T	G	SNP	CHD6	ENST00000373233	human	ensembl	74_37	-1	known	missense	c.3164	p.K1055T	1.000	superfamily_P-loop_NTPase	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_BRK_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD6	HGNC	ENSG00000124177				57	0	0	71	4	5.33333
SMOX	0	genome.wustl.edu	37	20	4167954	4167954	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	20	4167954	4167954	G	A	SNP	SMOX	ENST00000305958	human	ensembl	74_37	+1	known	missense	c.1568	p.R523H	1.000	pfam_Amino_oxidase	pfam_Amino_oxidase,pfam_FAD-dep_OxRdtase,pfam_FAD_bind_dom	-	no_errors	SMOX	HGNC	ENSG00000088826				34	0	0	38	7	15.5556
SRSF6	0	genome.wustl.edu	37	20	42089154	42089154	+	Splice_Site	SNP	G	G	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	20	42089154	42089154	G	T	SNP	SRSF6	ENST00000244020	human	ensembl	74_37	+1	known	splice_site	c.591-1	e5-1	1.000	-	-	-	no_errors	SRSF6	HGNC	ENSG00000124193				85	0	0	79	12	13.1868
MATN4	0	genome.wustl.edu	37	20	43933295	43933295	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	20	43933295	43933295	G	A	SNP	MATN4	ENST00000372754	human	ensembl	74_37	-1	known	silent	c.216	p.R72	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_EGF-like_Ca-bd_dom,pfam_Matrilin_coiled-coil_trimer,smart_VWF_A,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_VWF_A	-	no_errors	MATN4	HGNC	ENSG00000124159				42	0	0	24	11	31.4286
RBPJL	0	genome.wustl.edu	37	20	43941018	43941018	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	20	43941018	43941018	C	T	SNP	RBPJL	ENST00000343694	human	ensembl	74_37	+1	known	missense	c.602	p.S201L	1.000	pfam_LAG1_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_Beta-trefoil_DNA-bd_dom,pfam_LAG1_DNA-bd,superfamily_Beta-trefoil_DNA-bd_dom,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set	-	no_errors	RBPJL	HGNC	ENSG00000124232				24	0	0	20	6	23.0769
DBNDD2	0	genome.wustl.edu	37	20	44037177	44037177	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	20	44037177	44037177	G	A	SNP	DBNDD2	ENST00000372720	human	ensembl	74_37	+1	known	missense	c.364	p.E122K	1.000	pfam_Dysbindin	pfam_Dysbindin	-	no_errors	DBNDD2	HGNC	ENSG00000244274				82	0	0	51	25	32.8947
EPPIN-WFDC6	0	genome.wustl.edu	37	20	44166631	44166631	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	20	44166631	44166631	C	T	SNP	EPPIN-WFDC6	ENST00000504988	human	ensembl	74_37	-1	known	missense	c.494	p.R165H	0.814	pfam_WAP-type_4-diS_core,superfamily_WAP-type_4-diS_core	pfam_Prot_inh_Kunz-m,pfam_WAP-type_4-diS_core,superfamily_Prot_inh_Kunz-m,superfamily_WAP-type_4-diS_core,smart_WAP-type_4-diS_core,smart_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	EPPIN-WFDC6	HGNC	ENSG00000249139				90	0	0	76	40	34.4828
CTSA	0	genome.wustl.edu	37	20	44521441	44521441	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	20	44521441	44521441	G	A	SNP	CTSA	ENST00000372484	human	ensembl	74_37	+1	known	silent	c.576	p.L192	0.983	pfam_Peptidase_S10,prints_Peptidase_S10	pfam_Peptidase_S10,prints_Peptidase_S10	-	no_errors	CTSA	HGNC	ENSG00000064601				51	0	0	46	7	13.2075
DDX27	0	genome.wustl.edu	37	20	47858679	47858679	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	20	47858679	47858679	G	A	SNP	DDX27	ENST00000371764	human	ensembl	74_37	+1	known	silent	c.2145	p.A715	0.998	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX27	HGNC	ENSG00000124228				51	0	0	41	11	21.1538
PROKR2	0	genome.wustl.edu	37	20	5282888	5282888	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	20	5282888	5282888	A	G	SNP	PROKR2	ENST00000217270	human	ensembl	74_37	-1	known	missense	c.953	p.V318A	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	PROKR2	HGNC	ENSG00000101292				128	0	0	109	14	11.3821
CTCFL	0	genome.wustl.edu	37	20	56098737	56098737	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	20	56098737	56098737	T	A	SNP	CTCFL	ENST00000423479	human	ensembl	74_37	-1	known	missense	c.525	p.E175D	0.003	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CTCFL	HGNC	ENSG00000124092				92	0	0	95	7	6.86275
GNAS	0	genome.wustl.edu	37	20	57415375	57415375	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	20	57415375	57415375	G	A	SNP	GNAS	ENST00000313949	human	ensembl	74_37	+1	known	missense	c.214	p.G72S	0.052	pfam_NESP55	pfam_NESP55	-	no_errors	GNAS	HGNC	ENSG00000087460				53	0	0	39	7	15.2174
NELFCD	0	genome.wustl.edu	37	20	57564992	57564992	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	20	57564992	57564992	G	A	SNP	NELFCD	ENST00000602795	human	ensembl	74_37	+1	known	missense	c.791	p.G264D	1.000	pfam_TH1	pfam_TH1	-	no_errors	NELFCD	HGNC	ENSG00000101158				46	0	0	41	8	16.3265
C20orf197	0	genome.wustl.edu	37	20	58645855	58645855	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	20	58645855	58645855	G	A	SNP	C20orf197	ENST00000313426	human	ensembl	74_37	+1	known	missense	c.273	p.M91I	0.000	NULL	NULL	-	no_errors	C20orf197	HGNC	ENSG00000176659				36	0	0	39	4	9.30233
PSMA7	0	genome.wustl.edu	37	20	60714901	60714901	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	20	60714901	60714901	C	T	SNP	PSMA7	ENST00000370873	human	ensembl	74_37	-1	known	missense	c.284	p.R95Q	1.000	pfam_Proteasome_sua/b	pfam_Proteasome_sua/b,pfam_Proteasome_asu_N,smart_Proteasome_asu_N	-	no_errors	PSMA7	HGNC	ENSG00000101182				39	0	0	27	7	20.5882
OSBPL2	0	genome.wustl.edu	37	20	60854271	60854271	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	20	60854271	60854271	G	A	SNP	OSBPL2	ENST00000313733	human	ensembl	74_37	+1	known	missense	c.550	p.A184T	1.000	pfam_Oxysterol-bd	pfam_Oxysterol-bd	-	no_errors	OSBPL2	HGNC	ENSG00000130703				75	0	0	60	25	29.4118
DIDO1	0	genome.wustl.edu	37	20	61525803	61525803	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	20	61525803	61525803	C	T	SNP	DIDO1	ENST00000266070	human	ensembl	74_37	-1	known	missense	c.2534	p.R845H	0.989	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	DIDO1	HGNC	ENSG00000101191				78	0	0	59	19	24.359
YTHDF1	0	genome.wustl.edu	37	20	61835152	61835152	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	20	61835152	61835152	C	T	SNP	YTHDF1	ENST00000370339	human	ensembl	74_37	-1	known	missense	c.140	p.S47N	1.000	NULL	pfam_YTH_domain,pfscan_YTH_domain	-	no_errors	YTHDF1	HGNC	ENSG00000149658				32	0	0	22	8	26.6667
HELZ2	0	genome.wustl.edu	37	20	62196162	62196162	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	20	62196162	62196162	C	T	SNP	HELZ2	ENST00000467148	human	ensembl	74_37	-1	known	missense	c.4013	p.R1338H	0.357	NULL	superfamily_P-loop_NTPase	-	no_errors	HELZ2	HGNC	ENSG00000130589				27	0	0	25	6	19.3548
TNFRSF6B	0	genome.wustl.edu	37	20	62329757	62329757	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	20	62329757	62329757	G	A	SNP	TNFRSF6B	ENST00000369996	human	ensembl	74_37	+1	known	silent	c.744	p.A248	0.003	NULL	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	TNFRSF6B	HGNC	ENSG00000243509				16	0	0	5	4	44.4444
TCEA2	0	genome.wustl.edu	37	20	62697836	62697836	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	20	62697836	62697836	C	T	SNP	TCEA2	ENST00000343484	human	ensembl	74_37	+1	known	missense	c.80	p.A27V	0.999	superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,pirsf_TF_IIS-rel,tigrfam_TFSII	pfam_TFIIS_cen_dom,pfam_TFIIS_N,pfam_Znf_TFIIS,superfamily_TFIIS_cen_dom,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,smart_TFS2M,smart_Znf_TFIIS,pirsf_TF_IIS-rel,pfscan_Znf_TFIIS,tigrfam_TFSII	-	no_errors	TCEA2	HGNC	ENSG00000171703				76	0	0	83	8	8.79121
NPBWR2	0	genome.wustl.edu	37	20	62737901	62737901	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	20	62737901	62737901	G	A	SNP	NPBWR2	ENST00000369768	human	ensembl	74_37	-1	known	missense	c.284	p.T95M	0.981	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Neuropept_B/W_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Neuropept_B/W_rcpt,prints_GPCR_Rhodpsn,prints_Somatstn_rcpt,prints_Opioid_rcpt,prints_NPY_rcpt	-	no_errors	NPBWR2	HGNC	ENSG00000125522				20	0	0	29	4	12.1212
PLCB4	0	genome.wustl.edu	37	20	9404516	9404516	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	20	9404516	9404516	G	A	SNP	PLCB4	ENST00000334005	human	ensembl	74_37	+1	known	missense	c.2405	p.R802Q	1.000	pirsf_PLC-beta,superfamily_C2_dom	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_PLC-beta_CS,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,prints_Pinositol_PLipase_C,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB4	HGNC	ENSG00000101333				43	0	0	50	9	15.2542
NRIP1	0	genome.wustl.edu	37	21	16340294	16340294	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	21	16340294	16340294	G	T	SNP	NRIP1	ENST00000318948	human	ensembl	74_37	-1	known	missense	c.220	p.Q74K	1.000	NULL	NULL	-	no_errors	NRIP1	HGNC	ENSG00000180530				44	0	0	33	6	15.3846
USP25	0	genome.wustl.edu	37	21	17250724	17250724	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	21	17250724	17250724	C	T	SNP	USP25	ENST00000400183	human	ensembl	74_37	+1	known	missense	c.3308	p.T1103M	0.999	NULL	pfam_Peptidase_C19/C67,pfam_Ubiquitin-int_motif,superfamily_UBA-like,smart_Ubiquitin-int_motif,pfscan_Ubiquitin-int_motif,pfscan_Peptidase_C19/C67	-	no_errors	USP25	HGNC	ENSG00000155313				77	0	0	62	9	12.6761
ADAMTS1	0	genome.wustl.edu	37	21	28212641	28212641	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	21	28212641	28212641	C	T	SNP	ADAMTS1	ENST00000284984	human	ensembl	74_37	-1	known	missense	c.1619	p.C540Y	1.000	smart_ADAM_Cys-rich	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS1,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS1	HGNC	ENSG00000154734				84	0	0	78	7	8.23529
KRTAP27-1	0	genome.wustl.edu	37	21	31709741	31709741	+	Silent	SNP	G	G	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	21	31709741	31709741	G	T	SNP	KRTAP27-1	ENST00000382835	human	ensembl	74_37	-1	known	silent	c.246	p.P82	0.015	pfam_KRTAP_PMG	pfam_KRTAP_PMG	-	no_errors	KRTAP27-1	HGNC	ENSG00000206107				159	0	0	113	24	17.5182
SON	0	genome.wustl.edu	37	21	34923905	34923905	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	21	34923905	34923905	A	T	SNP	SON	ENST00000356577	human	ensembl	74_37	+1	known	missense	c.2368	p.T790S	0.916	superfamily_WD40_repeat_dom	pfam_G_patch_dom,superfamily_WD40_repeat_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_dsRNA-bd_dom	-	no_errors	SON	HGNC	ENSG00000159140				225	0	0	217	13	5.65217
RCAN1	0	genome.wustl.edu	37	21	35893850	35893850	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	21	35893850	35893850	G	A	SNP	RCAN1	ENST00000313806	human	ensembl	74_37	-1	known	missense	c.533	p.A178V	0.995	pfam_Calcipressin	pfam_Calcipressin	-	no_errors	RCAN1	HGNC	ENSG00000159200				29	0	0	22	4	15.3846
KCNJ15	0	genome.wustl.edu	37	21	39672159	39672159	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	21	39672159	39672159	G	A	SNP	KCNJ15	ENST00000328656	human	ensembl	74_37	+1	known	missense	c.976	p.D326N	1.000	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir1.3,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir1.1	-	no_errors	KCNJ15	HGNC	ENSG00000157551				73	0	0	35	10	22.2222
TRAPPC10	0	genome.wustl.edu	37	21	45511891	45511891	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	21	45511891	45511891	C	T	SNP	TRAPPC10	ENST00000291574	human	ensembl	74_37	+1	known	silent	c.2958	p.T986	0.057	NULL	NULL	-	no_errors	TRAPPC10	HGNC	ENSG00000160218				180	0	0	138	23	14.2857
ADARB1	0	genome.wustl.edu	37	21	46640907	46640907	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	21	46640907	46640907	G	A	SNP	ADARB1	ENST00000360697	human	ensembl	74_37	+1	known	missense	c.2024	p.R675H	1.000	pfam_A_deamin,smart_A_deamin,pfscan_A_deamin	pfam_A_deamin,pfam_dsRNA-bd_dom,superfamily_Cytokine_IL1-like,smart_dsRNA-bd_dom,smart_A_deamin,pfscan_dsRNA-bd_dom,pfscan_A_deamin	-	no_errors	ADARB1	HGNC	ENSG00000197381				31	0	0	24	4	14.2857
PCNT	0	genome.wustl.edu	37	21	47808672	47808672	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	21	47808672	47808672	C	T	SNP	PCNT	ENST00000359568	human	ensembl	74_37	+1	known	silent	c.3480	p.D1160	0.000	NULL	pfam_PACT_domain	-	no_errors	PCNT	HGNC	ENSG00000160299				46	0	0	29	6	17.1429
C22orf29	0	genome.wustl.edu	37	22	19839076	19839076	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	22	19839076	19839076	C	T	SNP	C22orf29	ENST00000328554	human	ensembl	74_37	-1	known	missense	c.709	p.A237T	0.000	NULL	NULL	-	no_errors	C22orf29	HGNC	ENSG00000215012				69	0	0	63	6	8.69565
C22orf29	0	genome.wustl.edu	37	22	19839620	19839620	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	22	19839620	19839620	G	A	SNP	C22orf29	ENST00000328554	human	ensembl	74_37	-1	known	silent	c.165	p.T55	0.000	NULL	NULL	-	no_errors	C22orf29	HGNC	ENSG00000215012				76	0	0	44	10	18.5185
ZDHHC8	0	genome.wustl.edu	37	22	20128528	20128528	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	22	20128528	20128528	G	A	SNP	ZDHHC8	ENST00000405930	human	ensembl	74_37	+1	known	missense	c.887	p.R296H	0.989	NULL	pfam_Znf_DHHC_palmitoyltrfase,superfamily_Plexin-like_fold,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC8	HGNC	ENSG00000099904				50	0	0	32	7	17.9487
RTN4R	0	genome.wustl.edu	37	22	20229616	20229616	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	22	20229616	20229616	A	G	SNP	RTN4R	ENST00000043402	human	ensembl	74_37	-1	known	missense	c.1040	p.L347P	0.413	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	RTN4R	HGNC	ENSG00000040608				31	0	0	23	6	20.6897
ZNF74	0	genome.wustl.edu	37	22	20760748	20760748	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	22	20760748	20760748	C	T	SNP	ZNF74	ENST00000356671	human	ensembl	74_37	+1	known	silent	c.1425	p.N475	0.028	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF74	HGNC	ENSG00000185252				67	0	0	48	8	14.2857
KLHL22	0	genome.wustl.edu	37	22	20796481	20796481	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	22	20796481	20796481	C	T	SNP	KLHL22	ENST00000328879	human	ensembl	74_37	-1	known	missense	c.1784	p.R595H	0.631	pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_Kelch_2,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL22	HGNC	ENSG00000099910				20	0	0	13	4	23.5294
MED15	0	genome.wustl.edu	37	22	20929406	20929406	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	22	20929406	20929406	A	G	SNP	MED15	ENST00000263205	human	ensembl	74_37	+1	known	missense	c.1159	p.T387A	0.996	pfam_Mediator_Med15_met	pfam_Mediator_Med15_met	-	no_errors	MED15	HGNC	ENSG00000099917				254	0	0	158	24	13.1868
ZNF280A	0	genome.wustl.edu	37	22	22869868	22869868	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	22	22869868	22869868	A	T	SNP	ZNF280A	ENST00000302097	human	ensembl	74_37	-1	known	missense	c.87	p.D29E	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF280A	HGNC	ENSG00000169548				158	0	0	103	25	19.5312
CABIN1	0	genome.wustl.edu	37	22	24573539	24573539	+	Silent	SNP	C	C	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	22	24573539	24573539	C	A	SNP	CABIN1	ENST00000263119	human	ensembl	74_37	+1	known	silent	c.6273	p.P2091	0.000	NULL	pfam_MEF2_binding,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CABIN1	HGNC	ENSG00000099991				33	0	0	23	5	17.8571
GUCD1	0	genome.wustl.edu	37	22	24939903	24939903	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	22	24939903	24939903	G	A	SNP	GUCD1	ENST00000407471	human	ensembl	74_37	-1	known	missense	c.535	p.R179C	1.000	pfam_Guanylyl_cyclase	pfam_Guanylyl_cyclase	-	no_errors	GUCD1	HGNC	ENSG00000138867				21	0	0	20	5	20
SGSM1	0	genome.wustl.edu	37	22	25246318	25246318	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	22	25246318	25246318	C	T	SNP	SGSM1	ENST00000400359	human	ensembl	74_37	+1	known	missense	c.374	p.A125V	1.000	pfam_Run,pfscan_Run	pfam_Run,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Run,smart_Rab-GTPase-TBC_dom,pfscan_Run,pfscan_Rab-GTPase-TBC_dom	-	no_errors	SGSM1	HGNC	ENSG00000167037				52	0	0	41	11	21.1538
SGSM1	0	genome.wustl.edu	37	22	25264717	25264717	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	22	25264717	25264717	C	T	SNP	SGSM1	ENST00000400359	human	ensembl	74_37	+1	known	nonsense	c.1186	p.R396*	0.999	NULL	pfam_Run,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Run,smart_Rab-GTPase-TBC_dom,pfscan_Run,pfscan_Rab-GTPase-TBC_dom	-	no_errors	SGSM1	HGNC	ENSG00000167037				134	0	0	100	25	20
ADRBK2	0	genome.wustl.edu	37	22	26091137	26091137	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	22	26091137	26091137	C	T	SNP	ADRBK2	ENST00000324198	human	ensembl	74_37	+1	known	silent	c.1116	p.A372	0.014	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RGS_dom,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Regulat_G_prot_signal_superfam,pfscan_Prot_kinase_dom,prints_GPCR_kinase	-	no_errors	ADRBK2	HGNC	ENSG00000100077				74	0	0	40	7	14.8936
OSBP2	0	genome.wustl.edu	37	22	31266670	31266670	+	Splice_Site	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	22	31266670	31266670	G	A	SNP	OSBP2	ENST00000332585	human	ensembl	74_37	+1	known	splice_site	c.1107+1	e3+1	1.000	-	-	-	no_errors	OSBP2	HGNC	ENSG00000184792				37	0	0	28	3	9.67742
EIF4ENIF1	0	genome.wustl.edu	37	22	31850237	31850237	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	22	31850237	31850237	C	T	SNP	EIF4ENIF1	ENST00000330125	human	ensembl	74_37	-1	known	missense	c.1405	p.V469I	0.754	pfam_eIF4E_transporter	pfam_eIF4E_transporter	-	no_errors	EIF4ENIF1	HGNC	ENSG00000184708				77	0	0	62	10	13.8889
MYH9	0	genome.wustl.edu	37	22	36696961	36696961	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	22	36696961	36696961	T	A	SNP	MYH9	ENST00000216181	human	ensembl	74_37	-1	known	missense	c.2774	p.E925V	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH9	HGNC	ENSG00000100345				70	0	0	42	6	12.5
GGA1	0	genome.wustl.edu	37	22	38026101	38026101	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	22	38026101	38026101	G	A	SNP	GGA1	ENST00000343632	human	ensembl	74_37	+1	known	missense	c.1255	p.G419S	1.000	NULL	pfam_VHS,pfam_GAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_Coatomer/clathrin_app_Ig-like,superfamily_ENTH_VHS,smart_VHS_subgr,smart_Clathrin_a/b/g-adaptin_app_Ig,pfscan_Clathrin_g-adaptin_app,pfscan_GAT,pfscan_VHS	-	no_errors	GGA1	HGNC	ENSG00000100083				47	0	0	30	5	14.2857
SH3BP1	0	genome.wustl.edu	37	22	38039705	38039705	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	22	38039705	38039705	G	A	SNP	SH3BP1	ENST00000357436	human	ensembl	74_37	+1	known	silent	c.528	p.P176	0.000	pfam_BAR_dom,smart_BAR_dom,pfscan_BAR_dom	pfam_RhoGAP_dom,pfam_BAR_dom,superfamily_Rho_GTPase_activation_prot,smart_BAR_dom,smart_RhoGAP_dom,pfscan_BAR_dom,pfscan_RhoGAP_dom	-	no_errors	SH3BP1	HGNC	ENSG00000100092				65	0	0	43	11	20.3704
MIEF1	0	genome.wustl.edu	37	22	39910152	39910152	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	22	39910152	39910152	G	A	SNP	MIEF1	ENST00000325301	human	ensembl	74_37	+1	known	missense	c.1216	p.D406N	1.000	NULL	NULL	-	no_errors	MIEF1	HGNC	ENSG00000100335				96	0	0	79	16	16.8421
MKL1	0	genome.wustl.edu	37	22	40807697	40807697	+	Silent	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	22	40807697	40807697	A	G	SNP	MKL1	ENST00000355630	human	ensembl	74_37	-1	known	silent	c.2493	p.H831	0.923	NULL	pfam_RPEL_repeat,pfam_SAP_dom,smart_RPEL_repeat,smart_SAP_dom,pfscan_RPEL_repeat,pfscan_SAP_dom	-	no_errors	MKL1	HGNC	ENSG00000196588				30	0	0	38	8	17.3913
EP300	0	genome.wustl.edu	37	22	41513716	41513716	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	22	41513716	41513716	A	G	SNP	EP300	ENST00000263253	human	ensembl	74_37	+1	known	missense	c.620	p.Y207C	1.000	NULL	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	EP300	HGNC	ENSG00000100393				53	0	0	37	4	9.7561
EP300	0	genome.wustl.edu	37	22	41523693	41523693	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	22	41523693	41523693	G	A	SNP	EP300	ENST00000263253	human	ensembl	74_37	+1	known	missense	c.1109	p.R370H	1.000	pfam_Znf_TAZ,superfamily_Znf_TAZ,smart_Znf_TAZ,pfscan_Znf_TAZ	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	EP300	HGNC	ENSG00000100393				113	0	0	72	20	21.7391
PARVB	0	genome.wustl.edu	37	22	44536011	44536011	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	22	44536011	44536011	A	G	SNP	PARVB	ENST00000406477	human	ensembl	74_37	+1	known	missense	c.799	p.M267V	1.000	superfamily_CH-domain	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	PARVB	HGNC	ENSG00000188677				116	0	0	88	21	19.2661
KIAA1644	0	genome.wustl.edu	37	22	44681393	44681393	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	22	44681393	44681393	G	A	SNP	KIAA1644	ENST00000381176	human	ensembl	74_37	-1	putative	silent	c.514	p.L172	0.302	NULL	NULL	-	no_errors	KIAA1644	HGNC	ENSG00000138944				70	0	0	30	5	14.2857
BRD1	0	genome.wustl.edu	37	22	50217191	50217191	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	22	50217191	50217191	G	A	SNP	BRD1	ENST00000216267	human	ensembl	74_37	-1	known	missense	c.775	p.R259C	1.000	superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP_dom,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP_dom,prints_Bromodomain,pfscan_PWWP_dom,pfscan_Znf_PHD-finger,pfscan_Bromodomain	-	no_errors	BRD1	HGNC	ENSG00000100425				32	0	0	21	10	32.2581
TTLL8	0	genome.wustl.edu	37	22	50487735	50487735	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	22	50487735	50487735	T	G	SNP	TTLL8	ENST00000266182	human	ensembl	74_37	-1	known	missense	c.207	p.K69N	0.001	NULL	pfam_TTL/TTLL_fam	-	no_errors	TTLL8	HGNC	ENSG00000138892				142	0	0	96	22	18.6441
PCNP	0	genome.wustl.edu	37	3	101311704	101311704	+	RNA	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	101311704	101311704	T	C	SNP	PCNP	ENST00000486406	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.178	-	-	-	no_errors	PCNP	HGNC	ENSG00000081154				14	0	0	14	2	12.5
CEP97	0	genome.wustl.edu	37	3	101451389	101451389	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	101451389	101451389	T	C	SNP	CEP97	ENST00000327230	human	ensembl	74_37	+1	known	missense	c.619	p.C207R	1.000	NULL	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CEP97	HGNC	ENSG00000182504				60	0	0	38	5	11.6279
CD96	0	genome.wustl.edu	37	3	111319601	111319601	+	Silent	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	111319601	111319601	A	G	SNP	CD96	ENST00000283285	human	ensembl	74_37	+1	known	silent	c.975	p.K325	0.012	pfscan_Ig-like_dom	smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	CD96	HGNC	ENSG00000153283				82	0	0	70	16	18.6047
BOC	0	genome.wustl.edu	37	3	112999994	112999994	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	112999994	112999994	A	G	SNP	BOC	ENST00000273395	human	ensembl	74_37	+1	known	missense	c.2428	p.T810A	1.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	BOC	HGNC	ENSG00000144857				46	0	0	41	7	14.5833
GRAMD1C	0	genome.wustl.edu	37	3	113627946	113627946	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	113627946	113627946	A	G	SNP	GRAMD1C	ENST00000358160	human	ensembl	74_37	+1	known	missense	c.931	p.T311A	0.998	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD1C	HGNC	ENSG00000178075				49	0	0	50	15	23.0769
ZBTB20	0	genome.wustl.edu	37	3	114069597	114069597	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	114069597	114069597	C	T	SNP	ZBTB20	ENST00000474710	human	ensembl	74_37	-1	known	missense	c.1328	p.S443N	0.994	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB20	HGNC	ENSG00000181722				53	0	0	56	5	8.19672
GAP43	0	genome.wustl.edu	37	3	115395025	115395025	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	115395025	115395025	G	A	SNP	GAP43	ENST00000305124	human	ensembl	74_37	+1	known	missense	c.196	p.A66T	0.047	NULL	pfam_Neuromodulin_C,pfam_Neuromodulin_gap-junction_N,pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Neuromodulin	-	no_errors	GAP43	HGNC	ENSG00000172020				105	0	0	110	8	6.77966
IGSF11	0	genome.wustl.edu	37	3	118621438	118621438	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	118621438	118621438	C	T	SNP	IGSF11	ENST00000393775	human	ensembl	74_37	-1	known	missense	c.1225	p.A409T	0.986	NULL	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	IGSF11	HGNC	ENSG00000144847				99	0	0	81	14	14.7368
B4GALT4	0	genome.wustl.edu	37	3	118931514	118931514	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	118931514	118931514	T	C	SNP	B4GALT4	ENST00000359213	human	ensembl	74_37	-1	known	missense	c.917	p.H306R	0.773	pfam_Galactosyl_T_C	pfam_Galactosyl_T_C,prints_Galactosyl_T	-	no_errors	B4GALT4	HGNC	ENSG00000121578				48	0	0	45	13	22.4138
CASR	0	genome.wustl.edu	37	3	122003470	122003470	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	122003470	122003470	G	A	SNP	CASR	ENST00000498619	human	ensembl	74_37	+1	known	missense	c.2699	p.R900H	1.000	NULL	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,superfamily_Growth_fac_rcpt_N_dom,pfscan_GPCR_3_C,prints_GPCR_3	-	no_errors	CASR	HGNC	ENSG00000036828				25	0	0	19	6	24
SEMA5B	0	genome.wustl.edu	37	3	122629836	122629836	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	122629836	122629836	G	A	SNP	SEMA5B	ENST00000451055	human	ensembl	74_37	-1	known	missense	c.3310	p.L1104F	1.000	NULL	pfam_Semap_dom,pfam_Thrombospondin_1_rpt,superfamily_Semap_dom,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Thrombospondin_1_rpt,pfscan_Semap_dom,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5B	HGNC	ENSG00000082684				37	0	0	23	7	23.3333
KLF15	0	genome.wustl.edu	37	3	126070789	126070789	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	126070789	126070789	G	T	SNP	KLF15	ENST00000296233	human	ensembl	74_37	-1	known	missense	c.977	p.P326H	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF15	HGNC	ENSG00000163884				22	0	0	16	6	27.2727
SEC61A1	0	genome.wustl.edu	37	3	127786377	127786377	+	Silent	SNP	A	A	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	127786377	127786377	A	T	SNP	SEC61A1	ENST00000243253	human	ensembl	74_37	+1	known	silent	c.1089	p.V363	0.700	pfam_SecY/SEC61-alpha,superfamily_SecY_su_dom,pirsf_SecY/SEC61-alpha,tigrfam_SecY/SEC61-alpha	pfam_SecY/SEC61-alpha,pfam_Translocon_Sec61/SecY_plug_dom,superfamily_SecY_su_dom,pirsf_SecY/SEC61-alpha,tigrfam_SecY/SEC61-alpha	-	no_errors	SEC61A1	HGNC	ENSG00000058262				89	0	0	84	21	20
MBD4	0	genome.wustl.edu	37	3	129152936	129152936	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	129152936	129152936	G	A	SNP	MBD4	ENST00000249910	human	ensembl	74_37	-1	known	silent	c.1245	p.S415	1.000	pirsf_Me_CpG-bd_MBD4	pfam_Methyl_CpG_DNA-bd,pfam_HhH-GPD_domain,superfamily_DNA-bd_dom,superfamily_DNA_glycosylase,smart_Methyl_CpG_DNA-bd,pirsf_Me_CpG-bd_MBD4,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MBD4	HGNC	ENSG00000129071				62	0	0	64	6	8.57143
COL6A6	0	genome.wustl.edu	37	3	130380888	130380888	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	130380888	130380888	A	G	SNP	COL6A6	ENST00000358511	human	ensembl	74_37	+1	known	missense	c.6238	p.R2080G	0.982	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A6	HGNC	ENSG00000206384				66	0	0	52	9	14.7541
PIK3R4	0	genome.wustl.edu	37	3	130422673	130422673	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	130422673	130422673	G	A	SNP	PIK3R4	ENST00000356763	human	ensembl	74_37	-1	known	nonsense	c.2992	p.R998*	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Prot_kinase_dom,pfam_WD40_repeat,pfam_HEAT,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_WD40_repeat,pfscan_HEAT_type_2,pfscan_Prot_kinase_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	PIK3R4	HGNC	ENSG00000196455				113	0	0	112	24	17.6471
CPNE4	0	genome.wustl.edu	37	3	131283121	131283121	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	131283121	131283121	G	A	SNP	CPNE4	ENST00000502818	human	ensembl	74_37	-1	known	nonsense	c.1054	p.Q352*	1.000	pfam_Copine,smart_VWF_A	pfam_Copine,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,smart_VWF_A,pfscan_C2_dom	-	no_errors	CPNE4	HGNC	ENSG00000196353				93	0	0	91	11	10.7843
NUP210	0	genome.wustl.edu	37	3	13372050	13372050	+	Silent	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	13372050	13372050	T	C	SNP	NUP210	ENST00000254508	human	ensembl	74_37	-1	known	silent	c.4020	p.L1340	0.297	NULL	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,superfamily_Cadherin-like,smart_Big_2	-	no_errors	NUP210	HGNC	ENSG00000132182				147	0	0	122	31	20.2614
NUP210	0	genome.wustl.edu	37	3	13384760	13384760	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	13384760	13384760	T	C	SNP	NUP210	ENST00000254508	human	ensembl	74_37	-1	known	missense	c.2879	p.D960G	1.000	NULL	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,superfamily_Cadherin-like,smart_Big_2	-	no_errors	NUP210	HGNC	ENSG00000132182				73	0	0	45	9	16.6667
PPP2R3A	0	genome.wustl.edu	37	3	135721928	135721928	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	135721928	135721928	C	T	SNP	PPP2R3A	ENST00000264977	human	ensembl	74_37	+1	known	missense	c.1588	p.P530S	1.000	NULL	pfscan_EF_hand_dom	-	no_errors	PPP2R3A	HGNC	ENSG00000073711				84	0	0	82	9	9.89011
STAG1	0	genome.wustl.edu	37	3	136059352	136059352	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	136059352	136059352	T	C	SNP	STAG1	ENST00000383202	human	ensembl	74_37	-1	known	missense	c.3653	p.D1218G	1.000	NULL	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG1	HGNC	ENSG00000118007				84	0	0	63	18	22.2222
SOX14	0	genome.wustl.edu	37	3	137484306	137484306	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	137484306	137484306	C	T	SNP	SOX14	ENST00000306087	human	ensembl	74_37	+1	known	missense	c.680	p.T227I	1.000	NULL	pfam_HMG_box_dom,pfam_TF_SOX,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX14	HGNC	ENSG00000168875				63	0	0	36	7	16.2791
COPB2	0	genome.wustl.edu	37	3	139080026	139080026	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	139080026	139080026	C	T	SNP	COPB2	ENST00000333188	human	ensembl	74_37	-1	known	missense	c.2107	p.A703T	1.000	pirsf_COPB2,pfam_Coatomer_WD-assoc_reg	pirsf_COPB2,pfam_Coatomer_WD-assoc_reg,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	COPB2	HGNC	ENSG00000184432				134	0	0	105	23	17.9688
XPC	0	genome.wustl.edu	37	3	14199997	14199997	+	Silent	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	14199997	14199997	A	G	SNP	XPC	ENST00000285021	human	ensembl	74_37	-1	known	silent	c.1386	p.P462	0.196	tigrfam_DNA_repair_Rad4_subgr	pfam_Rad4/PNGase_transGLS-fold,pfam_Rad4_beta-hairpin_dom3,pfam_Rad4_beta-hairpin_dom2,pfam_Rad4_beta-hairpin_dom1,tigrfam_DNA_repair_Rad4_subgr	-	no_errors	XPC	HGNC	ENSG00000154767				32	0	0	37	4	9.7561
ATR	0	genome.wustl.edu	37	3	142176461	142176461	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	142176461	142176461	C	T	SNP	ATR	ENST00000350721	human	ensembl	74_37	-1	known	missense	c.7640	p.R2547Q	1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PI3/4_kinase_cat_dom,pfam_PIK-rel_kinase_FAT,pfam_UME,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_UME,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_HEAT_type_2,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATR	HGNC	ENSG00000175054				61	0	0	63	16	20.2532
ATR	0	genome.wustl.edu	37	3	142216005	142216005	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	142216005	142216005	C	T	SNP	ATR	ENST00000350721	human	ensembl	74_37	-1	known	missense	c.5588	p.S1863N	1.000	pfam_PIK-rel_kinase_FAT,pfscan_PIK_FAT	pfam_PI3/4_kinase_cat_dom,pfam_PIK-rel_kinase_FAT,pfam_UME,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_UME,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_HEAT_type_2,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATR	HGNC	ENSG00000175054				93	0	0	83	13	13.5417
TRPC1	0	genome.wustl.edu	37	3	142521156	142521156	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	142521156	142521156	G	A	SNP	TRPC1	ENST00000476941	human	ensembl	74_37	+1	known	missense	c.1727	p.C576Y	1.000	pfam_Ion_trans_dom,prints_TRPC1_channel,tigrfam_TRP_channel	pfam_TRP_dom,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC1_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC1	HGNC	ENSG00000144935				66	0	0	50	6	10.7143
IGSF10	0	genome.wustl.edu	37	3	151164676	151164676	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	151164676	151164676	C	T	SNP	IGSF10	ENST00000282466	human	ensembl	74_37	-1	known	silent	c.3093	p.L1031	0.009	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	IGSF10	HGNC	ENSG00000152580				111	0	0	95	10	9.52381
SUCNR1	0	genome.wustl.edu	37	3	151598580	151598580	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	151598580	151598580	T	A	SNP	SUCNR1	ENST00000362032	human	ensembl	74_37	+1	known	nonsense	c.249	p.Y83*	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	SUCNR1	HGNC	ENSG00000198829				84	0	0	63	7	10
P2RY1	0	genome.wustl.edu	37	3	152553661	152553661	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	152553661	152553661	C	T	SNP	P2RY1	ENST00000305097	human	ensembl	74_37	+1	known	silent	c.90	p.V30	0.001	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_P2Y1_rcpt,prints_GPCR_Rhodpsn	-	no_errors	P2RY1	HGNC	ENSG00000169860				42	0	0	24	10	29.4118
GALNT15	0	genome.wustl.edu	37	3	16254150	16254150	+	Silent	SNP	C	C	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	16254150	16254150	C	A	SNP	GALNT15	ENST00000339732	human	ensembl	74_37	+1	known	silent	c.1272	p.S424	0.003	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT15	HGNC	ENSG00000131386				65	0	0	42	8	16
RFTN1	0	genome.wustl.edu	37	3	16358435	16358435	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	16358435	16358435	G	A	SNP	RFTN1	ENST00000334133	human	ensembl	74_37	-1	known	missense	c.1637	p.A546V	0.001	NULL	NULL	-	no_errors	RFTN1	HGNC	ENSG00000131378				104	0	0	79	5	5.95238
MYNN	0	genome.wustl.edu	37	3	169497257	169497257	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	169497257	169497257	T	A	SNP	MYNN	ENST00000349841	human	ensembl	74_37	+1	known	missense	c.968	p.I323K	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	MYNN	HGNC	ENSG00000085274				71	0	0	50	7	12.2807
LOC100128164	0	genome.wustl.edu	37	3	169664031	169664031	+	RNA	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	169664031	169664031	C	T	SNP	LOC100128164	ENST00000483289	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.996	-	-	-	no_errors	RP11-379K17.4	Clone_based_vega_gene	ENSG00000239219				93	0	0	64	24	27.2727
TBC1D5	0	genome.wustl.edu	37	3	17415970	17415970	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	17415970	17415970	C	T	SNP	TBC1D5	ENST00000253692	human	ensembl	74_37	-1	known	missense	c.815	p.G272D	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D5	HGNC	ENSG00000131374				23	0	0	28	4	12.5
NAALADL2	0	genome.wustl.edu	37	3	174951945	174951945	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	174951945	174951945	A	G	SNP	NAALADL2	ENST00000454872	human	ensembl	74_37	+1	known	missense	c.770	p.Q257R	1.000	NULL	superfamily_TFR-like_dimer_dom	-	no_errors	NAALADL2	HGNC	ENSG00000177694				67	0	0	54	11	16.9231
ABCC5	0	genome.wustl.edu	37	3	183682976	183682976	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	183682976	183682976	C	T	SNP	ABCC5	ENST00000334444	human	ensembl	74_37	-1	known	silent	c.2028	p.T676	0.190	pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC5	HGNC	ENSG00000114770				47	0	0	31	9	22.5
EIF4G1	0	genome.wustl.edu	37	3	184040373	184040373	+	Silent	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	184040373	184040373	A	G	SNP	EIF4G1	ENST00000352767	human	ensembl	74_37	+1	known	silent	c.1671	p.A557	0.002	NULL	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,pfam_W2_domain,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI,smart_W2_domain	-	no_errors	EIF4G1	HGNC	ENSG00000114867				40	0	0	33	9	21.4286
EPHB3	0	genome.wustl.edu	37	3	184299146	184299146	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	184299146	184299146	C	T	SNP	EPHB3	ENST00000330394	human	ensembl	74_37	+1	known	silent	c.2838	p.F946	0.430	pirsf_Tyr_kinase_ephrin_rcpt,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHB3	HGNC	ENSG00000182580				78	0	0	44	12	21.4286
IGF2BP2	0	genome.wustl.edu	37	3	185363401	185363401	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	185363401	185363401	C	T	SNP	IGF2BP2	ENST00000382199	human	ensembl	74_37	-1	known	missense	c.1718	p.R573H	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,pfam_RRM_dom,smart_RRM_dom,smart_KH_dom,pfscan_KH_dom_type_1,pfscan_RRM_dom	-	no_errors	IGF2BP2	HGNC	ENSG00000073792				57	0	0	42	6	12.5
EIF4A2	0	genome.wustl.edu	37	3	186504931	186504931	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	186504931	186504931	A	G	SNP	EIF4A2	ENST00000440191	human	ensembl	74_37	+1	known	missense	c.790	p.T264A	1.000	superfamily_P-loop_NTPase,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	EIF4A2	HGNC	ENSG00000156976				116	0	0	109	20	15.5039
MASP1	0	genome.wustl.edu	37	3	186954151	186954151	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	186954151	186954151	C	T	SNP	MASP1	ENST00000296280	human	ensembl	74_37	-1	known	missense	c.1508	p.R503H	1.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_CUB_dom,pfam_Sushi_SCR_CCP,pfam_EGF-like_Ca-bd_dom,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_Sushi_SCR_CCP,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1	-	no_errors	MASP1	HGNC	ENSG00000127241				52	0	0	25	8	24.2424
MUC4	0	genome.wustl.edu	37	3	195506181	195506181	+	Silent	SNP	G	G	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	195506181	195506181	G	T	SNP	MUC4	ENST00000463781	human	ensembl	74_37	-1	known	silent	c.12270	p.S4090	0.008	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EG-like_dom,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113				10	0	0	7	6	46.1538
PIGX	0	genome.wustl.edu	37	3	196454970	196454970	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	196454970	196454970	G	A	SNP	PIGX	ENST00000296333	human	ensembl	74_37	+1	known	silent	c.495	p.V165	0.920	pfam_PIG-X/PBN1,smart_PIG-X/PBN1	pfam_PIG-X/PBN1,smart_PIG-X/PBN1	-	no_errors	PIGX	HGNC	ENSG00000163964				52	0	0	54	4	6.89655
PAK2	0	genome.wustl.edu	37	3	196509566	196509566	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	196509566	196509566	C	T	SNP	PAK2	ENST00000327134	human	ensembl	74_37	+1	known	nonsense	c.49	p.R17*	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_CRIB_dom,superfamily_Kinase-like_dom,superfamily_WASP_C,smart_CRIB_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRIB_dom,pfscan_Prot_kinase_dom	-	no_errors	PAK2	HGNC	ENSG00000180370				216	0	0	189	32	14.4796
RARB	0	genome.wustl.edu	37	3	25622154	25622154	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	25622154	25622154	A	G	SNP	RARB	ENST00000404969	human	ensembl	74_37	+1	known	missense	c.748	p.T250A	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Nuc_orph_rcpt,prints_Retinoid-X_rcpt/HNF4	-	no_errors	RARB	HGNC	ENSG00000077092				89	0	0	59	10	14.4928
CCR4	0	genome.wustl.edu	37	3	32995805	32995805	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	32995805	32995805	C	T	SNP	CCR4	ENST00000330953	human	ensembl	74_37	+1	known	silent	c.891	p.C297	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Duffy_chemokine_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_CCR4,prints_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Chemokine_CXCR4,prints_ATII_rcpt,prints_Duffy_chemokine_rcpt	-	no_errors	CCR4	HGNC	ENSG00000183813				94	0	0	59	12	16.9014
MLH1	0	genome.wustl.edu	37	3	37092047	37092047	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	37092047	37092047	G	A	SNP	MLH1	ENST00000231790	human	ensembl	74_37	+1	known	missense	c.2174	p.R725H	1.000	NULL	pfam_DNA_mismatch_repair_C,pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,tigrfam_DNA_mismatch_repair_N	-	no_errors	MLH1	HGNC	ENSG00000076242				64	0	0	56	14	20
MYD88	0	genome.wustl.edu	37	3	38182330	38182330	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	38182330	38182330	C	T	SNP	MYD88	ENST00000417037	human	ensembl	74_37	+1	known	missense	c.790	p.L264F	1.000	pfam_TIR_dom,superfamily_TIR_dom,smart_TIR_dom,pirsf_Myelin_different_resp_MyD88,pfscan_TIR_dom	pfam_TIR_dom,pfam_Death_domain,superfamily_DEATH-like_dom,superfamily_TIR_dom,smart_Death_domain,smart_TIR_dom,pirsf_Myelin_different_resp_MyD88,pfscan_Death_domain,pfscan_TIR_dom	-	no_errors	MYD88	HGNC	ENSG00000172936				80	0	0	51	16	23.8806
EXOG	0	genome.wustl.edu	37	3	38565416	38565416	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	38565416	38565416	G	A	SNP	EXOG	ENST00000287675	human	ensembl	74_37	+1	known	missense	c.670	p.V224I	0.995	pfam_DNA/RNA_non-sp_Endonuclease,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A	pfam_DNA/RNA_non-sp_Endonuclease,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A	-	no_errors	EXOG	HGNC	ENSG00000157036				54	0	0	48	14	22.5806
SCN11A	0	genome.wustl.edu	37	3	38936340	38936340	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	38936340	38936340	C	T	SNP	SCN11A	ENST00000302328	human	ensembl	74_37	-1	known	missense	c.2519	p.R840H	0.000	pfam_Na_trans_assoc	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN11A	HGNC	ENSG00000168356				92	0	0	58	11	15.942
WDR48	0	genome.wustl.edu	37	3	39119656	39119656	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	39119656	39119656	C	T	SNP	WDR48	ENST00000302313	human	ensembl	74_37	+1	known	missense	c.1001	p.A334V	1.000	NULL	pfam_DUF3337,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR48	HGNC	ENSG00000114742				71	0	0	51	11	17.7419
CX3CR1	0	genome.wustl.edu	37	3	39307048	39307048	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	39307048	39307048	C	T	SNP	CX3CR1	ENST00000358309	human	ensembl	74_37	-1	known	missense	c.1049	p.R350H	0.000	prints_Chemokine_CX3CR1	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_CX3CR1,prints_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Duffy_chemokine_rcpt,prints_Chemokine_CXCR4	-	no_errors	CX3CR1	HGNC	ENSG00000168329				185	0	0	139	38	21.4689
ZNF445	0	genome.wustl.edu	37	3	44489280	44489280	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	44489280	44489280	G	A	SNP	ZNF445	ENST00000396077	human	ensembl	74_37	-1	known	missense	c.1883	p.T628I	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF445	HGNC	ENSG00000185219				110	0	0	76	14	15.5556
LARS2	0	genome.wustl.edu	37	3	45527238	45527238	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	45527238	45527238	T	A	SNP	LARS2	ENST00000265537	human	ensembl	74_37	+1	known	missense	c.1073	p.V358D	0.470	superfamily_Val/Leu/Ile-tRNA-synth_edit,tigrfam_Leu-tRNA-ligase_bac/mito	pfam_aa-tRNA-synth_Ia,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_V/L/I-tRNA-synth_anticodon-bd,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Val/Leu/Ile-tRNA-synth_edit,prints_Leu-tRNA-ligase_bac/mito,tigrfam_Leu-tRNA-ligase_bac/mito	-	no_errors	LARS2	HGNC	ENSG00000011376				180	0	0	131	23	14.9351
LIMD1	0	genome.wustl.edu	37	3	45636559	45636559	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	45636559	45636559	A	C	SNP	LIMD1	ENST00000273317	human	ensembl	74_37	+1	known	missense	c.188	p.Q63P	1.000	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LIMD1	HGNC	ENSG00000144791				25	0	0	21	6	22.2222
ALS2CL	0	genome.wustl.edu	37	3	46718370	46718370	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	46718370	46718370	G	A	SNP	ALS2CL	ENST00000318962	human	ensembl	74_37	-1	known	missense	c.1900	p.R634C	0.407	NULL	pfam_MORN,pfam_VPS9,superfamily_DH-domain,smart_MORN,pfscan_VPS9	-	no_errors	ALS2CL	HGNC	ENSG00000178038				91	0	0	59	16	21.3333
PRSS45	0	genome.wustl.edu	37	3	46783906	46783906	+	Silent	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	46783906	46783906	T	C	SNP	PRSS45	ENST00000442359	human	ensembl	74_37	-1	known	silent	c.621	p.S207	0.000	NULL	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	PRSS45	HGNC	ENSG00000188086				113	0	0	81	17	17.3469
SMARCC1	0	genome.wustl.edu	37	3	47719763	47719763	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	47719763	47719763	C	T	SNP	SMARCC1	ENST00000254480	human	ensembl	74_37	-1	known	missense	c.1496	p.R499H	1.000	pfam_SWIRM,superfamily_Homeodomain-like,pfscan_SWIRM	pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,superfamily_BRCT_dom,smart_Chromo_domain/shadow,smart_SANT/Myb,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	SMARCC1	HGNC	ENSG00000173473				136	0	0	133	24	15.2866
ZNF589	0	genome.wustl.edu	37	3	48302376	48302376	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	48302376	48302376	G	T	SNP	ZNF589	ENST00000354698	human	ensembl	74_37	+1	known	missense	c.170	p.R57M	0.988	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF589	HGNC	ENSG00000164048				63	0	0	68	13	16.0494
ITPR1	0	genome.wustl.edu	37	3	4856237	4856237	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	4856237	4856237	G	A	SNP	ITPR1	ENST00000302640	human	ensembl	74_37	+1	known	silent	c.7647	p.P2549	0.001	pfam_Ion_trans_dom	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR1	HGNC	ENSG00000150995				48	0	0	39	15	27.7778
NDUFAF3	0	genome.wustl.edu	37	3	49059972	49059972	+	Splice_Site	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	49059972	49059972	G	A	SNP	NDUFAF3	ENST00000326925	human	ensembl	74_37	+1	known	splice_site	c.270+1	e2+1	1.000	-	-	-	no_errors	NDUFAF3	HGNC	ENSG00000178057				37	0	0	22	4	15.3846
USP19	0	genome.wustl.edu	37	3	49149019	49149019	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	49149019	49149019	G	T	SNP	USP19	ENST00000398888	human	ensembl	74_37	-1	known	missense	c.2822	p.T941N	0.220	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Znf_MYND,pfam_CS_dom,superfamily_HSP20-like_chaperone,pfscan_CS_dom,pfscan_Znf_MYND,pfscan_Peptidase_C19/C67	-	no_errors	USP19	HGNC	ENSG00000172046				24	0	0	17	4	19.0476
NAT6	0	genome.wustl.edu	37	3	50334066	50334066	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	50334066	50334066	G	A	SNP	NAT6	ENST00000354862	human	ensembl	74_37	-1	known	missense	c.895	p.R299C	0.416	NULL	pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	NAT6	HGNC	ENSG00000243477				40	0	0	35	4	10.2564
RASSF1	0	genome.wustl.edu	37	3	50369149	50369149	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	50369149	50369149	G	A	SNP	RASSF1	ENST00000357043	human	ensembl	74_37	-1	known	missense	c.613	p.R205C	1.000	smart_Ras-assoc,pfscan_Ras-assoc	pfam_Ras-assoc,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SARAH_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	RASSF1	HGNC	ENSG00000068028				81	0	0	45	13	22.4138
GRM2	0	genome.wustl.edu	37	3	51746888	51746888	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	51746888	51746888	C	T	SNP	GRM2	ENST00000395052	human	ensembl	74_37	+1	known	missense	c.850	p.R284C	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_2,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GRM2	HGNC	ENSG00000164082				24	0	0	24	4	14.2857
ABHD14A	0	genome.wustl.edu	37	3	52014951	52014951	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	52014951	52014951	C	T	SNP	ABHD14A	ENST00000273596	human	ensembl	74_37	+1	known	missense	c.733	p.R245C	0.697	NULL	pfam_Lysophospholipase_put	-	no_errors	ABHD14A	HGNC	ENSG00000248487				75	0	0	54	10	15.625
DNAH1	0	genome.wustl.edu	37	3	52400871	52400871	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	52400871	52400871	G	A	SNP	DNAH1	ENST00000420323	human	ensembl	74_37	+1	known	silent	c.5733	p.L1911	0.953	pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase	-	no_errors	DNAH1	HGNC	ENSG00000114841				98	0	0	74	16	17.7778
BAP1	0	genome.wustl.edu	37	3	52437234	52437234	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	52437234	52437234	C	T	SNP	BAP1	ENST00000460680	human	ensembl	74_37	-1	known	missense	c.1810	p.V604M	0.001	NULL	pfam_Peptidase_C12,prints_Peptidase_C12	-	no_errors	BAP1	HGNC	ENSG00000163930				49	0	0	35	5	12.5
BAP1	0	genome.wustl.edu	37	3	52439832	52439832	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	52439832	52439832	G	A	SNP	BAP1	ENST00000460680	human	ensembl	74_37	-1	known	silent	c.880	p.L294	0.000	NULL	pfam_Peptidase_C12,prints_Peptidase_C12	-	no_errors	BAP1	HGNC	ENSG00000163930				35	0	0	34	3	8.10811
GLT8D1	0	genome.wustl.edu	37	3	52729486	52729486	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	52729486	52729486	G	A	SNP	GLT8D1	ENST00000266014	human	ensembl	74_37	-1	known	nonsense	c.763	p.R255*	0.996	pfam_Glyco_trans_8	pfam_Glyco_trans_8	-	no_errors	GLT8D1	HGNC	ENSG00000016864				140	0	0	105	20	16
ITIH4	0	genome.wustl.edu	37	3	52858944	52858944	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	52858944	52858944	C	T	SNP	ITIH4	ENST00000266041	human	ensembl	74_37	-1	known	missense	c.790	p.A264T	1.000	NULL	pfam_VIT,pfam_ITI_HC_C,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH4	HGNC	ENSG00000055955				41	0	0	26	4	13.3333
IL17RD	0	genome.wustl.edu	37	3	57132279	57132279	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	57132279	57132279	G	T	SNP	IL17RD	ENST00000296318	human	ensembl	74_37	-1	known	nonsense	c.1452	p.C484*	0.631	pfam_SEFIR	pfam_SEFIR,superfamily_TIR_dom	-	no_errors	IL17RD	HGNC	ENSG00000144730				35	0	0	24	5	17.2414
SLMAP	0	genome.wustl.edu	37	3	57743544	57743544	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	57743544	57743544	G	A	SNP	SLMAP	ENST00000428312	human	ensembl	74_37	+1	known	missense	c.166	p.A56T	1.000	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	pfam_FHA_dom,pfam_PFD_beta-like,superfamily_SMAD_FHA_domain,superfamily_Prefoldin,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	SLMAP	HGNC	ENSG00000163681				39	0	0	23	6	20.6897
PTPRG	0	genome.wustl.edu	37	3	62253473	62253473	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	62253473	62253473	G	A	SNP	PTPRG	ENST00000474889	human	ensembl	74_37	+1	known	silent	c.2853	p.T951	0.154	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRG	HGNC	ENSG00000144724				125	0	0	99	10	9.17431
FEZF2	0	genome.wustl.edu	37	3	62355818	62355818	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	62355818	62355818	G	A	SNP	FEZF2	ENST00000283268	human	ensembl	74_37	-1	known	silent	c.1320	p.H440	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	FEZF2	HGNC	ENSG00000153266				65	0	0	46	9	16.3636
SYNPR	0	genome.wustl.edu	37	3	63466538	63466538	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	63466538	63466538	G	A	SNP	SYNPR	ENST00000478300	human	ensembl	74_37	+1	known	missense	c.115	p.G39S	1.000	pfam_Marvel,prints_Synaptophysin/porin	pfam_Marvel,prints_Synaptophysin/porin	-	no_errors	SYNPR	HGNC	ENSG00000163630				150	0	0	124	26	17.3333
ADAMTS9	0	genome.wustl.edu	37	3	64547403	64547403	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	64547403	64547403	C	T	SNP	ADAMTS9	ENST00000498707	human	ensembl	74_37	-1	known	missense	c.4549	p.V1517I	0.003	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS9	HGNC	ENSG00000163638				103	0	0	68	20	22.7273
LMOD3	0	genome.wustl.edu	37	3	69167997	69167997	+	Silent	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	69167997	69167997	T	C	SNP	LMOD3	ENST00000420581	human	ensembl	74_37	-1	known	silent	c.1509	p.R503	1.000	NULL	pfam_Tropomodulin	-	no_errors	LMOD3	HGNC	ENSG00000163380				40	0	0	30	7	18.9189
GRM7	0	genome.wustl.edu	37	3	7620434	7620434	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	7620434	7620434	G	A	SNP	GRM7	ENST00000402647	human	ensembl	74_37	+1	known	missense	c.1841	p.R614H	1.000	pfam_GPCR_3_C,pfscan_GPCR_3_C	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_7,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4	-	no_errors	GRM7	HGNC	ENSG00000196277				143	0	0	101	23	18.5484
SSUH2	0	genome.wustl.edu	37	3	8669394	8669394	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	8669394	8669394	C	T	SNP	SSUH2	ENST00000544814	human	ensembl	74_37	-1	known	missense	c.664	p.G222S	0.113	superfamily_HSP_DnaJ_Cys-rich_dom	superfamily_HSP_DnaJ_Cys-rich_dom	-	no_errors	SSUH2	HGNC	ENSG00000125046				49	0	0	26	8	23.5294
BRPF1	0	genome.wustl.edu	37	3	9784848	9784848	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	9784848	9784848	A	G	SNP	BRPF1	ENST00000383829	human	ensembl	74_37	+1	known	missense	c.2222	p.Q741R	1.000	superfamily_Bromodomain	pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP_dom,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP_dom,pfscan_PWWP_dom,pfscan_Znf_PHD-finger,pfscan_Znf_C2H2,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRPF1	HGNC	ENSG00000156983				31	0	0	35	6	14.6341
OR5H2	0	genome.wustl.edu	37	3	98001806	98001806	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	98001806	98001806	G	A	SNP	OR5H2	ENST00000355273	human	ensembl	74_37	+1	known	silent	c.75	p.Q25	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5H2	HGNC	ENSG00000197938				204	0	0	194	38	16.3793
CRELD1	0	genome.wustl.edu	37	3	9986201	9986201	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	9986201	9986201	A	G	SNP	CRELD1	ENST00000383811	human	ensembl	74_37	+1	known	missense	c.1201	p.T401A	1.000	NULL	pfam_DUF3456,pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_Furin_repeat,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	CRELD1	HGNC	ENSG00000163703				58	0	0	42	7	14.2857
TET2	0	genome.wustl.edu	37	4	106157341	106157341	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	106157341	106157341	T	A	SNP	TET2	ENST00000380013	human	ensembl	74_37	+1	known	missense	c.2242	p.L748I	0.000	NULL	NULL	-	no_errors	TET2	HGNC	ENSG00000168769				89	0	0	67	18	21.1765
MAD2L1	0	genome.wustl.edu	37	4	120983144	120983144	+	Silent	SNP	A	A	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	120983144	120983144	A	C	SNP	MAD2L1	ENST00000296509	human	ensembl	74_37	-1	known	silent	c.327	p.T109	0.997	pfam_HORMA_DNA-bd,superfamily_HORMA_DNA-bd,pfscan_HORMA_DNA-bd	pfam_HORMA_DNA-bd,superfamily_HORMA_DNA-bd,pfscan_HORMA_DNA-bd	-	no_errors	MAD2L1	HGNC	ENSG00000164109				36	0	0	38	6	13.6364
SPRY1	0	genome.wustl.edu	37	4	124323363	124323363	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	124323363	124323363	G	A	SNP	SPRY1	ENST00000339241	human	ensembl	74_37	+1	known	missense	c.617	p.R206Q	1.000	pfam_Sprouty	pfam_Sprouty	-	no_errors	SPRY1	HGNC	ENSG00000164056				109	0	0	79	17	17.7083
FAT4	0	genome.wustl.edu	37	4	126370353	126370353	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	126370353	126370353	G	A	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	missense	c.8182	p.V2728I	0.028	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				125	0	0	91	18	16.5138
FAT4	0	genome.wustl.edu	37	4	126398366	126398366	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	126398366	126398366	C	T	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	missense	c.12350	p.P4117L	0.986	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				223	0	0	197	25	11.2613
FAT4	0	genome.wustl.edu	37	4	126411789	126411789	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	126411789	126411789	C	T	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	silent	c.13812	p.T4604	0.998	NULL	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				73	0	0	74	10	11.9048
PCDH10	0	genome.wustl.edu	37	4	134071537	134071537	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	134071537	134071537	G	A	SNP	PCDH10	ENST00000264360	human	ensembl	74_37	+1	known	missense	c.242	p.R81H	1.000	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650				158	0	0	116	15	11.4504
PCDH10	0	genome.wustl.edu	37	4	134072675	134072675	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	134072675	134072675	G	A	SNP	PCDH10	ENST00000264360	human	ensembl	74_37	+1	known	silent	c.1380	p.A460	0.991	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650				70	0	0	54	8	12.9032
BOD1L1	0	genome.wustl.edu	37	4	13597501	13597501	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	13597501	13597501	C	T	SNP	BOD1L1	ENST00000040738	human	ensembl	74_37	-1	known	missense	c.8087	p.G2696E	0.000	NULL	NULL	-	no_errors	BOD1L1	HGNC	ENSG00000038219				185	0	0	168	24	12.5
LRBA	0	genome.wustl.edu	37	4	151773292	151773292	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	151773292	151773292	C	T	SNP	LRBA	ENST00000357115	human	ensembl	74_37	-1	known	missense	c.3570	p.M1190I	0.465	NULL	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl_sf,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom	-	no_errors	LRBA	HGNC	ENSG00000198589				113	0	0	76	17	18.2796
FBXW7	0	genome.wustl.edu	37	4	153271192	153271192	+	Splice_Site	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	153271192	153271192	A	G	SNP	FBXW7	ENST00000281708	human	ensembl	74_37	-1	known	splice_site	c.584+2	e2+2	1.000	-	-	-	no_errors	FBXW7	HGNC	ENSG00000109670				8	0	0	8	4	33.3333
FHDC1	0	genome.wustl.edu	37	4	153897150	153897150	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	153897150	153897150	C	T	SNP	FHDC1	ENST00000260008	human	ensembl	74_37	+1	known	missense	c.2707	p.R903C	1.000	NULL	pfam_FH2_Formin,smart_FH2_Formin	-	no_errors	FHDC1	HGNC	ENSG00000137460				51	0	0	26	7	21.2121
TRIM2	0	genome.wustl.edu	37	4	154243896	154243896	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	154243896	154243896	T	C	SNP	TRIM2	ENST00000338700	human	ensembl	74_37	+1	known	missense	c.1879	p.F627L	1.000	pfam_NHL_repeat,pfscan_NHL_repeat_subgr	pfam_NHL_repeat,pfam_Filamin/ABP280_repeat-like,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_Ig_E-set,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Filamin,pfscan_Filamin/ABP280_repeat-like,pfscan_NHL_repeat_subgr,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM2	HGNC	ENSG00000109654				69	0	0	51	13	20.3125
MAP9	0	genome.wustl.edu	37	4	156289916	156289916	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	156289916	156289916	C	T	SNP	MAP9	ENST00000311277	human	ensembl	74_37	-1	known	missense	c.530	p.R177Q	0.926	NULL	NULL	-	no_errors	MAP9	HGNC	ENSG00000164114				78	0	0	60	9	13.0435
GLRB	0	genome.wustl.edu	37	4	158074033	158074033	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	158074033	158074033	C	G	SNP	GLRB	ENST00000264428	human	ensembl	74_37	+1	known	missense	c.1068	p.N356K	0.990	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Glycine_rcpt_B,prints_GABAA_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GLRB	HGNC	ENSG00000109738				82	0	0	67	10	12.987
FAM198B	0	genome.wustl.edu	37	4	159092395	159092395	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	159092395	159092395	C	T	SNP	FAM198B	ENST00000393807	human	ensembl	74_37	-1	known	missense	c.133	p.A45T	0.991	NULL	NULL	-	no_errors	FAM198B	HGNC	ENSG00000164125				42	0	0	21	12	36.3636
KLHL2	0	genome.wustl.edu	37	4	166215608	166215608	+	Silent	SNP	T	T	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	166215608	166215608	T	G	SNP	KLHL2	ENST00000226725	human	ensembl	74_37	+1	known	silent	c.642	p.S214	1.000	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL2	HGNC	ENSG00000109466				41	0	0	39	7	15.2174
DDX60	0	genome.wustl.edu	37	4	169194431	169194431	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	169194431	169194431	T	C	SNP	DDX60	ENST00000393743	human	ensembl	74_37	-1	known	missense	c.2573	p.Q858R	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX60	HGNC	ENSG00000137628				74	0	0	61	8	11.5942
CEP44	0	genome.wustl.edu	37	4	175231102	175231102	+	Silent	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	175231102	175231102	T	C	SNP	CEP44	ENST00000426172	human	ensembl	74_37	+1	known	silent	c.780	p.C260	0.861	NULL	NULL	-	no_errors	CEP44	HGNC	ENSG00000164118				67	0	0	41	21	33.871
GLRA3	0	genome.wustl.edu	37	4	175598374	175598374	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	175598374	175598374	T	C	SNP	GLRA3	ENST00000274093	human	ensembl	74_37	-1	known	missense	c.782	p.Y261C	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_Glycine_rcpt_A3,prints_Glycine_rcpt_A,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GLRA3	HGNC	ENSG00000145451				53	0	0	50	9	15.2542
ASB5	0	genome.wustl.edu	37	4	177142368	177142368	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	177142368	177142368	G	A	SNP	ASB5	ENST00000296525	human	ensembl	74_37	-1	known	missense	c.608	p.T203I	0.998	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	-	no_errors	ASB5	HGNC	ENSG00000164122				70	0	0	67	17	20.2381
VEGFC	0	genome.wustl.edu	37	4	177648991	177648991	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	177648991	177648991	A	G	SNP	VEGFC	ENST00000280193	human	ensembl	74_37	-1	known	missense	c.493	p.C165R	1.000	pfam_PDGF/VEGF_dom,smart_PDGF/VEGF_dom,pfscan_PDGF/VEGF_dom	pfam_PDGF/VEGF_dom,pfam_CXCXC_repeat,smart_PDGF/VEGF_dom,pfscan_PDGF/VEGF_dom	-	no_errors	VEGFC	HGNC	ENSG00000150630				103	0	0	82	12	12.766
CDKN2AIP	0	genome.wustl.edu	37	4	184368553	184368553	+	Silent	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	184368553	184368553	A	G	SNP	CDKN2AIP	ENST00000504169	human	ensembl	74_37	+1	known	silent	c.1716	p.A572	0.883	NULL	pfam_DUF3469,pfscan_dsRNA-bd_dom	-	no_errors	CDKN2AIP	HGNC	ENSG00000168564				248	0	0	214	35	14.0562
TRAPPC11	0	genome.wustl.edu	37	4	184585026	184585026	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	184585026	184585026	C	T	SNP	TRAPPC11	ENST00000334690	human	ensembl	74_37	+1	known	silent	c.6	p.S2	0.982	NULL	pfam_Foie-gras_1,pfam_DUF1683_C	-	no_errors	TRAPPC11	HGNC	ENSG00000168538				51	0	0	54	12	18.1818
CCDC110	0	genome.wustl.edu	37	4	186381064	186381064	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	186381064	186381064	G	T	SNP	CCDC110	ENST00000307588	human	ensembl	74_37	-1	known	missense	c.677	p.T226N	0.001	NULL	superfamily_4_helix_cytokine-like_core	-	no_errors	CCDC110	HGNC	ENSG00000168491				54	0	0	64	5	7.24638
F11	0	genome.wustl.edu	37	4	187195296	187195296	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	187195296	187195296	C	A	SNP	F11	ENST00000403665	human	ensembl	74_37	+1	known	missense	c.352	p.L118I	0.072	pfam_PAN-1_domain,smart_Apple,pfscan_Pan_app	pfam_Peptidase_S1,pfam_PAN-1_domain,superfamily_Trypsin-like_Pept_dom,smart_Apple,smart_Peptidase_S1,pfscan_Pan_app,pfscan_Peptidase_S1,prints_Apple,prints_Peptidase_S1A	-	no_errors	F11	HGNC	ENSG00000088926				100	0	0	87	10	10.3093
FAM193A	0	genome.wustl.edu	37	4	2673877	2673877	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	2673877	2673877	T	A	SNP	FAM193A	ENST00000324666	human	ensembl	74_37	+1	known	nonsense	c.1236	p.C412*	0.997	NULL	NULL	-	no_errors	FAM193A	HGNC	ENSG00000125386				79	0	0	47	16	25.3968
STIM2	0	genome.wustl.edu	37	4	27024459	27024459	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	27024459	27024459	C	T	SNP	STIM2	ENST00000382009	human	ensembl	74_37	+1	known	silent	c.2367	p.R789	1.000	NULL	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,pfscan_SAM	-	no_errors	STIM2	HGNC	ENSG00000109689				118	0	0	83	15	15.3061
ADD1	0	genome.wustl.edu	37	4	2916624	2916624	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	2916624	2916624	C	T	SNP	ADD1	ENST00000264758	human	ensembl	74_37	+1	known	missense	c.1712	p.T571M	1.000	NULL	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	-	no_errors	ADD1	HGNC	ENSG00000087274				55	0	0	50	8	13.7931
PCDH7	0	genome.wustl.edu	37	4	30723234	30723234	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	30723234	30723234	G	A	SNP	PCDH7	ENST00000543491	human	ensembl	74_37	+1	known	missense	c.190	p.V64M	1.000	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH7	HGNC	ENSG00000169851				35	0	0	19	3	13.6364
PCDH7	0	genome.wustl.edu	37	4	30724012	30724012	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	30724012	30724012	C	T	SNP	PCDH7	ENST00000543491	human	ensembl	74_37	+1	known	missense	c.968	p.P323L	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH7	HGNC	ENSG00000169851				17	0	0	12	4	25
APBB2	0	genome.wustl.edu	37	4	41016202	41016202	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	41016202	41016202	G	A	SNP	APBB2	ENST00000295974	human	ensembl	74_37	-1	known	missense	c.233	p.A78V	1.000	NULL	pfam_PTB/PI_dom,pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom,pfscan_WW_dom	-	no_errors	APBB2	HGNC	ENSG00000163697				103	0	0	57	16	21.9178
OTOP1	0	genome.wustl.edu	37	4	4204211	4204211	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	4204211	4204211	G	A	SNP	OTOP1	ENST00000296358	human	ensembl	74_37	-1	known	missense	c.694	p.R232W	0.967	pfam_Otopetrin	pfam_Otopetrin	-	no_errors	OTOP1	HGNC	ENSG00000163982				98	0	0	87	23	20.9091
LYAR	0	genome.wustl.edu	37	4	4283520	4283520	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	4283520	4283520	G	T	SNP	LYAR	ENST00000343470	human	ensembl	74_37	-1	known	missense	c.227	p.A76E	0.972	NULL	pfam_Znf_C2H2_LYAR	-	no_errors	LYAR	HGNC	ENSG00000145220				170	1	0.584795	119	19	13.7681
GABRA4	0	genome.wustl.edu	37	4	46976326	46976326	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	46976326	46976326	G	A	SNP	GABRA4	ENST00000264318	human	ensembl	74_37	-1	known	missense	c.644	p.P215L	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABBAa4_rcpt,prints_GABAA_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA4	HGNC	ENSG00000109158				87	0	0	70	16	18.6047
SCFD2	0	genome.wustl.edu	37	4	54231634	54231634	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	54231634	54231634	A	C	SNP	SCFD2	ENST00000401642	human	ensembl	74_37	-1	known	missense	c.475	p.L159V	0.882	NULL	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	SCFD2	HGNC	ENSG00000184178				59	0	0	36	4	10
STK32B	0	genome.wustl.edu	37	4	5468447	5468447	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	5468447	5468447	C	T	SNP	STK32B	ENST00000282908	human	ensembl	74_37	+1	known	silent	c.927	p.C309	0.932	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	STK32B	HGNC	ENSG00000152953				49	0	0	39	11	22
EVC2	0	genome.wustl.edu	37	4	5624508	5624508	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	5624508	5624508	G	A	SNP	EVC2	ENST00000344408	human	ensembl	74_37	-1	known	missense	c.2257	p.R753C	1.000	NULL	pfam_Limbin	-	no_errors	EVC2	HGNC	ENSG00000173040				48	0	0	36	5	12.1951
EVC	0	genome.wustl.edu	37	4	5754686	5754686	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	5754686	5754686	G	A	SNP	EVC	ENST00000264956	human	ensembl	74_37	+1	known	missense	c.1222	p.A408T	0.062	NULL	NULL	-	no_errors	EVC	HGNC	ENSG00000072840				12	0	0	10	3	23.0769
PPP2R2C	0	genome.wustl.edu	37	4	6377649	6377649	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	6377649	6377649	A	G	SNP	PPP2R2C	ENST00000335585	human	ensembl	74_37	-1	known	missense	c.344	p.I115T	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_PP2A_PR55,prints_PP2A_PR55	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_PP2A_PR55,prints_PP2A_PR55	-	no_errors	PPP2R2C	HGNC	ENSG00000074211				77	0	0	59	18	23.3766
MAN2B2	0	genome.wustl.edu	37	4	6606969	6606969	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	6606969	6606969	C	T	SNP	MAN2B2	ENST00000285599	human	ensembl	74_37	+1	known	missense	c.1727	p.A576V	0.000	pfam_Glyco_hydro_38_C,superfamily_Gal_mutarotase_SF_dom	pfam_Glyco_hydro_38_N,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Gal_mutarotase_SF_dom,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2B2	HGNC	ENSG00000013288				61	0	0	46	3	6.12245
CENPC	0	genome.wustl.edu	37	4	68380266	68380266	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	68380266	68380266	C	T	SNP	CENPC	ENST00000273853	human	ensembl	74_37	-1	known	missense	c.970	p.A324T	0.002	NULL	pfam_Mif2/CENP-C_cupin,pfam_Cupin_2,superfamily_RmlC_Cupin	-	no_errors	CENPC	HGNC	ENSG00000145241				25	0	0	16	4	20
KIAA0232	0	genome.wustl.edu	37	4	6865064	6865064	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	6865064	6865064	G	A	SNP	KIAA0232	ENST00000307659	human	ensembl	74_37	+1	known	silent	c.2955	p.G985	0.265	NULL	NULL	-	no_errors	KIAA0232	HGNC	ENSG00000170871				76	0	0	70	5	6.66667
CSN3	0	genome.wustl.edu	37	4	71114881	71114881	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	71114881	71114881	C	T	SNP	CSN3	ENST00000304954	human	ensembl	74_37	+1	known	missense	c.254	p.A85V	0.000	pfam_Casein_kappa,pirsf_Casein_kappa	pfam_Casein_kappa,pirsf_Casein_kappa	-	no_errors	CSN3	HGNC	ENSG00000171209				70	0	0	52	11	17.4603
PPEF2	0	genome.wustl.edu	37	4	76787346	76787346	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	76787346	76787346	C	T	SNP	PPEF2	ENST00000286719	human	ensembl	74_37	-1	known	missense	c.1916	p.R639H	0.001	pirsf_Ser/Thr-Pase_EF-hand_contain	pirsf_Ser/Thr-Pase_EF-hand_contain,pfam_PEstase_dom,pfam_PPP_dom,smart_Ser/Thr-sp_prot-phosphatase,smart_EF_hand_dom,prints_Ser/Thr-sp_prot-phosphatase,pfscan_EF_hand_dom	-	no_errors	PPEF2	HGNC	ENSG00000156194				140	1	0.70922	110	26	19.1176
FRAS1	0	genome.wustl.edu	37	4	79437097	79437097	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	79437097	79437097	C	A	SNP	FRAS1	ENST00000264895	human	ensembl	74_37	+1	known	missense	c.10319	p.T3440N	1.000	NULL	pfam_Calx_beta,pfam_VWF_C,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_VWC_out,smart_VWF_C,smart_Furin_repeat,smart_EG-like_dom,smart_Calx_beta,pfscan_VWF_C	-	no_errors	FRAS1	HGNC	ENSG00000138759				73	0	0	45	11	19.6429
GAK	0	genome.wustl.edu	37	4	860918	860918	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	860918	860918	C	G	SNP	GAK	ENST00000314167	human	ensembl	74_37	-1	known	missense	c.2698	p.A900P	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Tensin_phosphatase_C2-dom,pfam_DnaJ_domain,superfamily_Kinase-like_dom,superfamily_DnaJ_domain,superfamily_C2_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_DnaJ_domain,pfscan_Prot_kinase_dom,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom,pfscan_DnaJ_domain	-	no_errors	GAK	HGNC	ENSG00000178950				19	0	0	13	4	23.5294
GAK	0	genome.wustl.edu	37	4	861151	861151	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	861151	861151	T	C	SNP	GAK	ENST00000314167	human	ensembl	74_37	-1	known	missense	c.2465	p.D822G	0.137	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Tensin_phosphatase_C2-dom,pfam_DnaJ_domain,superfamily_Kinase-like_dom,superfamily_DnaJ_domain,superfamily_C2_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_DnaJ_domain,pfscan_Prot_kinase_dom,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom,pfscan_DnaJ_domain	-	no_errors	GAK	HGNC	ENSG00000178950				75	0	0	62	19	23.4568
ARHGAP24	0	genome.wustl.edu	37	4	86898809	86898809	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	86898809	86898809	G	A	SNP	ARHGAP24	ENST00000395184	human	ensembl	74_37	+1	known	missense	c.893	p.R298H	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP24	HGNC	ENSG00000138639				69	0	0	57	10	14.9254
SPP1	0	genome.wustl.edu	37	4	88903760	88903760	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	88903760	88903760	C	T	SNP	SPP1	ENST00000395080	human	ensembl	74_37	+1	known	silent	c.657	p.S219	0.988	pfam_Osteopontin,smart_Osteopontin	pfam_Osteopontin,smart_Osteopontin,prints_Osteopontin	-	no_errors	SPP1	HGNC	ENSG00000118785				121	0	0	106	17	13.8211
RAP1GDS1	0	genome.wustl.edu	37	4	99313170	99313170	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	99313170	99313170	C	T	SNP	RAP1GDS1	ENST00000339360	human	ensembl	74_37	+1	known	silent	c.579	p.H193	1.000	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	RAP1GDS1	HGNC	ENSG00000138698				59	0	0	49	7	12.5
ST8SIA4	0	genome.wustl.edu	37	5	100222222	100222222	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	100222222	100222222	A	G	SNP	ST8SIA4	ENST00000231461	human	ensembl	74_37	-1	known	missense	c.328	p.Y110H	1.000	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST8SIA4	HGNC	ENSG00000113532				110	0	0	80	15	15.7895
FAM173B	0	genome.wustl.edu	37	5	10239183	10239183	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	10239183	10239183	C	T	SNP	FAM173B	ENST00000511437	human	ensembl	74_37	-1	known	missense	c.302	p.R101H	0.955	NULL	NULL	-	no_errors	FAM173B	HGNC	ENSG00000150756				130	0	0	76	22	22.449
NUDT12	0	genome.wustl.edu	37	5	102890483	102890483	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	102890483	102890483	G	A	SNP	NUDT12	ENST00000230792	human	ensembl	74_37	-1	known	missense	c.1036	p.P346S	1.000	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	pfam_NUDIX_hydrolase_dom,pfam_Ankyrin_rpt,pfam_Znr_NADH_PPase,pfam_NADH_PPase-like_N,superfamily_NUDIX_hydrolase_dom-like,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	NUDT12	HGNC	ENSG00000112874				65	0	0	63	12	16
FAM170A	0	genome.wustl.edu	37	5	118965518	118965518	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	118965518	118965518	G	A	SNP	FAM170A	ENST00000515256	human	ensembl	74_37	+1	known	missense	c.55	p.A19T	0.000	NULL	NULL	-	no_errors	FAM170A	HGNC	ENSG00000164334				218	0	0	145	25	14.7059
ZNF608	0	genome.wustl.edu	37	5	124036739	124036739	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	124036739	124036739	A	G	SNP	ZNF608	ENST00000306315	human	ensembl	74_37	-1	known	missense	c.1130	p.L377S	1.000	NULL	NULL	-	no_errors	ZNF608	HGNC	ENSG00000168916				101	0	0	88	11	11.1111
MEGF10	0	genome.wustl.edu	37	5	126781226	126781226	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	126781226	126781226	G	A	SNP	MEGF10	ENST00000274473	human	ensembl	74_37	+1	known	missense	c.2569	p.G857R	1.000	NULL	pfam_EGF_laminin,pfam_EGF_extracell,superfamily_Proteinase_amylase_inhib_dom,smart_EG-like_dom,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EMI_domain	-	no_errors	MEGF10	HGNC	ENSG00000145794				88	0	0	67	17	20.2381
ADAMTS19	0	genome.wustl.edu	37	5	128983558	128983558	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	128983558	128983558	G	A	SNP	ADAMTS19	ENST00000274487	human	ensembl	74_37	+1	known	missense	c.1955	p.G652E	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_PLAC,pfam_Pept_M10_metallopeptidase,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS19	HGNC	ENSG00000145808				133	0	0	128	9	6.56934
RAPGEF6	0	genome.wustl.edu	37	5	130846113	130846113	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	130846113	130846113	G	A	SNP	RAPGEF6	ENST00000509018	human	ensembl	74_37	-1	known	silent	c.699	p.D233	0.984	NULL	pfam_RasGRF_CDC25,pfam_PDZ,pfam_Ras-assoc,pfam_cNMP-bd_dom,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,superfamily_PDZ,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ras-like_Gua-exchang_fac_N,smart_PDZ,smart_Ras-assoc,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_PDZ,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF6	HGNC	ENSG00000158987				69	0	0	60	11	15.493
PPP2CA	0	genome.wustl.edu	37	5	133536739	133536739	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	133536739	133536739	C	T	SNP	PPP2CA	ENST00000481195	human	ensembl	74_37	-1	known	silent	c.513	p.S171	0.993	pfam_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	pfam_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP2CA	HGNC	ENSG00000113575				52	0	0	73	11	13.0952
LECT2	0	genome.wustl.edu	37	5	135283098	135283098	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	135283098	135283098	C	T	SNP	LECT2	ENST00000274507	human	ensembl	74_37	-1	known	silent	c.378	p.L126	1.000	pfam_Peptidase_M23,pirsf_LECT2_chordata	pfam_Peptidase_M23,pirsf_LECT2_chordata	-	no_errors	LECT2	HGNC	ENSG00000145826				93	0	0	64	19	22.8916
KLHL3	0	genome.wustl.edu	37	5	136964110	136964110	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	136964110	136964110	G	A	SNP	KLHL3	ENST00000541417	human	ensembl	74_37	-1	known	missense	c.560	p.A187V	0.262	NULL	pfam_BACK,smart_BACK	-	no_errors	KLHL3	HGNC	ENSG00000146021				141	0	0	108	38	26.0274
NPY6R	0	genome.wustl.edu	37	5	137144426	137144426	+	RNA	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	137144426	137144426	C	T	SNP	NPY6R	ENST00000510937	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	NPY6R	HGNC	ENSG00000226306				32	0	0	24	3	11.1111
SLC23A1	0	genome.wustl.edu	37	5	138715412	138715412	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	138715412	138715412	C	T	SNP	SLC23A1	ENST00000353963	human	ensembl	74_37	-1	known	missense	c.892	p.G298S	1.000	pfam_Xant/urac/vitC	pfam_Xant/urac/vitC	-	no_errors	SLC23A1	HGNC	ENSG00000170482				26	0	0	28	8	22.2222
PCDHA2	0	genome.wustl.edu	37	5	140176157	140176157	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	140176157	140176157	C	T	SNP	PCDHA2	ENST00000526136	human	ensembl	74_37	+1	known	silent	c.1608	p.S536	0.093	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA2	HGNC	ENSG00000204969				85	0	0	34	9	20.9302
PCDHA3	0	genome.wustl.edu	37	5	140181571	140181571	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	140181571	140181571	C	T	SNP	PCDHA3	ENST00000522353	human	ensembl	74_37	+1	known	silent	c.789	p.T263	0.000	pfam_Cadherin,superfamily_Cadherin-like,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA3	HGNC	ENSG00000255408				65	0	0	68	11	13.9241
PCDHA3	0	genome.wustl.edu	37	5	140182272	140182272	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	140182272	140182272	G	A	SNP	PCDHA3	ENST00000522353	human	ensembl	74_37	+1	known	missense	c.1490	p.R497Q	0.301	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA3	HGNC	ENSG00000255408				96	0	0	61	16	20.7792
PCDHA4	0	genome.wustl.edu	37	5	140186905	140186905	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	140186905	140186905	G	A	SNP	PCDHA4	ENST00000530339	human	ensembl	74_37	+1	known	missense	c.133	p.V45M	1.000	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA4	HGNC	ENSG00000204967				93	0	0	74	5	6.32911
PCDHA4	0	genome.wustl.edu	37	5	140188263	140188263	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	140188263	140188263	G	A	SNP	PCDHA4	ENST00000530339	human	ensembl	74_37	+1	known	silent	c.1491	p.R497	0.959	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA4	HGNC	ENSG00000204967				90	0	0	55	13	19.1176
PCDHA5	0	genome.wustl.edu	37	5	140203557	140203557	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	140203557	140203557	C	T	SNP	PCDHA5	ENST00000529859	human	ensembl	74_37	+1	known	missense	c.2197	p.R733W	0.008	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA5	HGNC	ENSG00000204965				73	0	0	37	9	19.5652
PCDHA6	0	genome.wustl.edu	37	5	140209209	140209209	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	140209209	140209209	C	T	SNP	PCDHA6	ENST00000529310	human	ensembl	74_37	+1	known	silent	c.1533	p.H511	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA6	HGNC	ENSG00000081842				85	0	0	64	12	15.7895
PCDHA6	0	genome.wustl.edu	37	5	140209726	140209726	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	140209726	140209726	G	A	SNP	PCDHA6	ENST00000529310	human	ensembl	74_37	+1	known	missense	c.2050	p.V684M	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA6	HGNC	ENSG00000081842				72	0	0	53	9	14.5161
PCDHA13	0	genome.wustl.edu	37	5	140263605	140263605	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	140263605	140263605	G	A	SNP	PCDHA13	ENST00000289272	human	ensembl	74_37	+1	known	silent	c.1752	p.S584	0.139	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA13	HGNC	ENSG00000239389				108	0	0	53	15	22.0588
PCDHA13	0	genome.wustl.edu	37	5	140264042	140264042	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	140264042	140264042	G	A	SNP	PCDHA13	ENST00000289272	human	ensembl	74_37	+1	known	missense	c.2189	p.G730D	0.900	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA13	HGNC	ENSG00000239389				97	0	0	55	11	16.6667
PCDHB11	0	genome.wustl.edu	37	5	140579471	140579471	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	140579471	140579471	G	A	SNP	PCDHB11	ENST00000354757	human	ensembl	74_37	+1	known	missense	c.124	p.G42R	0.596	pfam_Cadherin_N,superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHB11	HGNC	ENSG00000197479				68	0	0	55	10	15.3846
PCDHB11	0	genome.wustl.edu	37	5	140580614	140580614	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	140580614	140580614	G	A	SNP	PCDHB11	ENST00000354757	human	ensembl	74_37	+1	known	missense	c.1267	p.V423I	0.225	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHB11	HGNC	ENSG00000197479				206	1	0.483092	140	29	17.1598
PCDHB11	0	genome.wustl.edu	37	5	140581384	140581384	+	Silent	SNP	C	C	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	140581384	140581384	C	A	SNP	PCDHB11	ENST00000354757	human	ensembl	74_37	+1	known	silent	c.2037	p.A679	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHB11	HGNC	ENSG00000197479				96	0	0	68	17	20
TAF7	0	genome.wustl.edu	37	5	140698866	140698866	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	140698866	140698866	G	A	SNP	TAF7	ENST00000313368	human	ensembl	74_37	-1	known	missense	c.746	p.T249M	1.000	NULL	pfam_TAFII55_prot_cons_reg	-	no_errors	TAF7	HGNC	ENSG00000178913				142	0	0	119	21	15
TAF7	0	genome.wustl.edu	37	5	140699557	140699557	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	140699557	140699557	G	A	SNP	TAF7	ENST00000313368	human	ensembl	74_37	-1	known	missense	c.55	p.R19C	1.000	pfam_TAFII55_prot_cons_reg	pfam_TAFII55_prot_cons_reg	-	no_errors	TAF7	HGNC	ENSG00000178913				139	0	0	100	29	22.4806
PCDHGA5	0	genome.wustl.edu	37	5	140745350	140745350	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	140745350	140745350	G	A	SNP	PCDHGA5	ENST00000518069	human	ensembl	74_37	+1	known	missense	c.1453	p.A485T	0.964	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA5	HGNC	ENSG00000253485				209	0	0	134	40	22.9885
PCDHGA6	0	genome.wustl.edu	37	5	140754322	140754322	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	140754322	140754322	C	T	SNP	PCDHGA6	ENST00000517434	human	ensembl	74_37	+1	known	silent	c.672	p.S224	0.001	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA6	HGNC	ENSG00000253731				33	0	0	21	4	16
GNPDA1	0	genome.wustl.edu	37	5	141385882	141385882	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	141385882	141385882	C	T	SNP	GNPDA1	ENST00000311337	human	ensembl	74_37	-1	known	missense	c.236	p.R79Q	1.000	pfam_Glc/Gal-6P_isomerase,tigrfam_Glucosamine6P_isomerase	pfam_Glc/Gal-6P_isomerase,tigrfam_Glucosamine6P_isomerase	-	no_errors	GNPDA1	HGNC	ENSG00000113552				60	0	0	58	13	18.3099
MYOZ3	0	genome.wustl.edu	37	5	150056388	150056388	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	150056388	150056388	G	A	SNP	MYOZ3	ENST00000297130	human	ensembl	74_37	+1	known	missense	c.707	p.R236K	1.000	pfam_Calsarcin-bd	pfam_Calsarcin-bd	-	no_errors	MYOZ3	HGNC	ENSG00000164591				87	0	0	63	9	12.5
SLC36A1	0	genome.wustl.edu	37	5	150846761	150846761	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	150846761	150846761	C	T	SNP	SLC36A1	ENST00000243389	human	ensembl	74_37	+1	known	missense	c.421	p.R141C	0.902	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC36A1	HGNC	ENSG00000123643				111	0	0	93	15	13.8889
GRIA1	0	genome.wustl.edu	37	5	153190682	153190682	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	153190682	153190682	G	T	SNP	GRIA1	ENST00000448073	human	ensembl	74_37	+1	known	missense	c.2648	p.G883V	1.000	NULL	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA1	HGNC	ENSG00000155511				57	0	0	38	6	13.6364
RNF145	0	genome.wustl.edu	37	5	158630640	158630640	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	158630640	158630640	T	C	SNP	RNF145	ENST00000518802	human	ensembl	74_37	-1	known	missense	c.76	p.K26E	0.001	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF145	HGNC	ENSG00000145860				59	0	0	50	8	13.7931
ATP10B	0	genome.wustl.edu	37	5	160113246	160113246	+	Silent	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	160113246	160113246	A	G	SNP	ATP10B	ENST00000327245	human	ensembl	74_37	-1	known	silent	c.310	p.L104	1.000	tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP10B	HGNC	ENSG00000118322				46	0	0	24	5	17.2414
GABRB2	0	genome.wustl.edu	37	5	160721153	160721153	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	160721153	160721153	G	A	SNP	GABRB2	ENST00000274547	human	ensembl	74_37	-1	known	missense	c.1474	p.R492C	0.986	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAb_rcpt,prints_GABAAa_rcpt,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAb_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,prints_GABAAa_rcpt,tigrfam_Neur_channel	-	no_errors	GABRB2	HGNC	ENSG00000145864				100	0	0	63	15	19.2308
GABRG2	0	genome.wustl.edu	37	5	161520894	161520894	+	Silent	SNP	C	C	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	161520894	161520894	C	A	SNP	GABRG2	ENST00000356592	human	ensembl	74_37	+1	known	silent	c.168	p.V56	1.000	prints_GABBAg_rcpt	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABBAg_rcpt,prints_GABAA_rcpt,prints_GABBAg2_rcpt,prints_GABAAa_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRG2	HGNC	ENSG00000113327				86	0	0	66	10	13.1579
MYO10	0	genome.wustl.edu	37	5	16699619	16699619	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	16699619	16699619	G	A	SNP	MYO10	ENST00000513610	human	ensembl	74_37	-1	known	missense	c.3496	p.R1166C	0.941	NULL	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_Pleckstrin_homology,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_Ras-assoc,superfamily_P-loop_NTPase,superfamily_FERM_central,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology,prints_Myosin_head_motor_dom	-	no_errors	MYO10	HGNC	ENSG00000145555				51	0	0	52	15	22.3881
MYO10	0	genome.wustl.edu	37	5	16764481	16764481	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	16764481	16764481	C	T	SNP	MYO10	ENST00000513610	human	ensembl	74_37	-1	known	missense	c.1204	p.A402T	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_Pleckstrin_homology,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_Ras-assoc,superfamily_P-loop_NTPase,superfamily_FERM_central,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology,prints_Myosin_head_motor_dom	-	no_errors	MYO10	HGNC	ENSG00000145555				96	0	0	68	21	23.5955
LCP2	0	genome.wustl.edu	37	5	169689854	169689854	+	Silent	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	169689854	169689854	T	C	SNP	LCP2	ENST00000046794	human	ensembl	74_37	-1	known	silent	c.810	p.P270	0.000	NULL	pfam_SH2,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,smart_SH2,pfscan_SH2	-	no_errors	LCP2	HGNC	ENSG00000043462				122	0	0	97	9	8.49057
NKX2-5	0	genome.wustl.edu	37	5	172659583	172659583	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	172659583	172659583	G	A	SNP	NKX2-5	ENST00000329198	human	ensembl	74_37	-1	known	nonsense	c.964	p.R322*	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	NKX2-5	HGNC	ENSG00000183072				44	0	0	17	3	15
HMP19	0	genome.wustl.edu	37	5	173534316	173534316	+	Splice_Site	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	173534316	173534316	G	A	SNP	HMP19	ENST00000303177	human	ensembl	74_37	+1	known	splice_site	c.325-1	e4-1	1.000	-	-	-	no_errors	NSG2	Uniprot_gn	ENSG00000170091				83	0	0	57	11	16.1765
HK3	0	genome.wustl.edu	37	5	176314232	176314232	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	176314232	176314232	G	A	SNP	HK3	ENST00000292432	human	ensembl	74_37	-1	known	silent	c.1707	p.P569	0.000	pfam_Hexokinase_N	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	HK3	HGNC	ENSG00000160883				29	0	0	27	5	15.625
HK3	0	genome.wustl.edu	37	5	176317898	176317898	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	176317898	176317898	C	T	SNP	HK3	ENST00000292432	human	ensembl	74_37	-1	known	silent	c.459	p.A153	0.000	pfam_Hexokinase_N	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	HK3	HGNC	ENSG00000160883				61	0	0	54	9	14.2857
FGFR4	0	genome.wustl.edu	37	5	176523152	176523152	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	176523152	176523152	A	G	SNP	FGFR4	ENST00000292408	human	ensembl	74_37	+1	known	missense	c.1916	p.H639R	1.000	pirsf_FGF_rcpt_fam,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_FGF_rcpt_fam,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	FGFR4	HGNC	ENSG00000160867				48	0	0	31	3	8.82353
NSD1	0	genome.wustl.edu	37	5	176678848	176678848	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	176678848	176678848	C	T	SNP	NSD1	ENST00000439151	human	ensembl	74_37	+1	known	missense	c.4759	p.R1587C	1.000	superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	pfam_PWWP_dom,pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_PWWP_dom,smart_Znf_PHD,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger	-	no_errors	NSD1	HGNC	ENSG00000165671				79	0	0	74	12	13.9535
NSD1	0	genome.wustl.edu	37	5	176721549	176721549	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	176721549	176721549	A	G	SNP	NSD1	ENST00000439151	human	ensembl	74_37	+1	known	missense	c.7180	p.I2394V	0.000	NULL	pfam_PWWP_dom,pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_PWWP_dom,smart_Znf_PHD,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger	-	no_errors	NSD1	HGNC	ENSG00000165671				116	0	0	94	22	18.9655
BTNL9	0	genome.wustl.edu	37	5	180475169	180475169	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	180475169	180475169	C	T	SNP	BTNL9	ENST00000376842	human	ensembl	74_37	+1	known	silent	c.352	p.L118	0.115	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_SPRY_rcpt,pfam_Ig_V-set,superfamily_ConA-like_lec_gl_sf,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Ig-like_dom,prints_Butyrophylin	-	no_errors	BTNL9	HGNC	ENSG00000165810				50	0	0	28	7	20
PDZD2	0	genome.wustl.edu	37	5	32069705	32069705	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	32069705	32069705	G	A	SNP	PDZD2	ENST00000282493	human	ensembl	74_37	+1	known	missense	c.2482	p.A828T	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD2	HGNC	ENSG00000133401				56	0	0	64	14	17.9487
PDZD2	0	genome.wustl.edu	37	5	32088835	32088835	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	32088835	32088835	A	G	SNP	PDZD2	ENST00000282493	human	ensembl	74_37	+1	known	missense	c.5281	p.S1761G	0.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD2	HGNC	ENSG00000133401				81	0	0	59	14	19.1781
ADAMTS12	0	genome.wustl.edu	37	5	33576232	33576232	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	33576232	33576232	A	G	SNP	ADAMTS12	ENST00000504830	human	ensembl	74_37	-1	known	missense	c.3899	p.L1300P	1.000	NULL	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS12	HGNC	ENSG00000151388				193	0	0	116	30	20.5479
NIPBL	0	genome.wustl.edu	37	5	36976272	36976272	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	36976272	36976272	G	A	SNP	NIPBL	ENST00000282516	human	ensembl	74_37	+1	known	silent	c.1263	p.S421	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	NIPBL	HGNC	ENSG00000164190				106	0	0	82	15	15.4639
NIPBL	0	genome.wustl.edu	37	5	37022373	37022373	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	37022373	37022373	C	T	SNP	NIPBL	ENST00000282516	human	ensembl	74_37	+1	known	nonsense	c.5455	p.R1819*	0.998	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	NIPBL	HGNC	ENSG00000164190				42	0	0	35	7	16.6667
LIFR	0	genome.wustl.edu	37	5	38506042	38506042	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	38506042	38506042	G	A	SNP	LIFR	ENST00000263409	human	ensembl	74_37	-1	known	missense	c.1256	p.S419L	0.711	superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	LIFR	HGNC	ENSG00000113594				127	0	0	101	14	12.1739
PTGER4	0	genome.wustl.edu	37	5	40681634	40681634	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	40681634	40681634	C	T	SNP	PTGER4	ENST00000302472	human	ensembl	74_37	+1	known	missense	c.539	p.A180V	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Prost_EP4_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Prost_EP4_rcpt,prints_Prostanoid_rcpt,prints_GPCR_Rhodpsn,prints_Prostglndn_DP_rcpt	-	no_errors	PTGER4	HGNC	ENSG00000171522				47	0	0	35	3	7.89474
MROH2B	0	genome.wustl.edu	37	5	40998235	40998235	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	40998235	40998235	C	T	SNP	MROH2B	ENST00000399564	human	ensembl	74_37	-1	known	silent	c.4677	p.P1559	0.994	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	MROH2B	HGNC	ENSG00000171495				200	0	0	153	35	18.617
PLCXD3	0	genome.wustl.edu	37	5	41382224	41382224	+	Silent	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	41382224	41382224	T	C	SNP	PLCXD3	ENST00000328457	human	ensembl	74_37	-1	known	silent	c.516	p.P172	0.999	pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom	pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_PInositol-sp_X_dom	-	no_errors	PLCXD3	HGNC	ENSG00000182836				134	0	0	105	22	17.3228
EXOC3	0	genome.wustl.edu	37	5	465271	465271	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	465271	465271	C	T	SNP	EXOC3	ENST00000315013	human	ensembl	74_37	+1	known	missense	c.1822	p.R608W	1.000	pfam_Sec6	pfam_Sec6	-	no_errors	EXOC3	HGNC	ENSG00000180104				13	0	0	10	2	16.6667
ARL15	0	genome.wustl.edu	37	5	53409092	53409092	+	Silent	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	53409092	53409092	A	G	SNP	ARL15	ENST00000504924	human	ensembl	74_37	-1	known	silent	c.402	p.T134	1.000	pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_MIRO-like,pfam_Small_GTPase,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1	pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_MIRO-like,pfam_Small_GTPase,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,prints_Small_GTPase_ARF/SAR	-	no_errors	ARL15	HGNC	ENSG00000185305				64	0	0	46	11	19.2982
MAP3K1	0	genome.wustl.edu	37	5	56177584	56177584	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	56177584	56177584	C	T	SNP	MAP3K1	ENST00000399503	human	ensembl	74_37	+1	novel	missense	c.2557	p.R853C	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015				105	0	0	76	15	16.4835
ADAMTS6	0	genome.wustl.edu	37	5	64556430	64556430	+	Silent	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	64556430	64556430	T	C	SNP	ADAMTS6	ENST00000381055	human	ensembl	74_37	-1	known	silent	c.1827	p.T609	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS6	HGNC	ENSG00000049192				24	0	0	34	8	19.0476
BDP1	0	genome.wustl.edu	37	5	70840949	70840949	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	70840949	70840949	C	T	SNP	BDP1	ENST00000358731	human	ensembl	74_37	+1	known	missense	c.6647	p.T2216I	0.000	NULL	superfamily_Homeodomain-like,smart_SANT/Myb	-	no_errors	BDP1	HGNC	ENSG00000145734				117	0	0	94	21	18.2609
MAP1B	0	genome.wustl.edu	37	5	71495820	71495820	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	71495820	71495820	G	A	SNP	MAP1B	ENST00000296755	human	ensembl	74_37	+1	known	missense	c.6638	p.R2213H	1.000	NULL	pfam_MAP1B_neuraxin	-	no_errors	MAP1B	HGNC	ENSG00000131711				179	0	0	137	30	17.9641
HMGCR	0	genome.wustl.edu	37	5	74655088	74655088	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	74655088	74655088	G	A	SNP	HMGCR	ENST00000287936	human	ensembl	74_37	+1	known	missense	c.2251	p.A751T	1.000	pfam_HMG_CoA_Rdtase,superfamily_HMG_CoA_Rdtase_sub-bd,pfscan_HMG_CoA_Rdtase,prints_HMG_CoA_Rdtase,tigrfam_HMG_CoA_Rdtase_metazoan,tigrfam_HMG_CoA_Rdtase_eu_arc	pfam_HMG_CoA_Rdtase,pfam_Patched,superfamily_HMG_CoA_Rdtase_sub-bd,superfamily_HMG_CoA_Rdtase_NAD(P)-bd,pfscan_SSD,pfscan_HMG_CoA_Rdtase,prints_HMG_CoA_Rdtase,tigrfam_HMG_CoA_Rdtase_metazoan,tigrfam_HMG_CoA_Rdtase_eu_arc	-	no_errors	HMGCR	HGNC	ENSG00000113161				52	0	0	50	11	18.0328
SV2C	0	genome.wustl.edu	37	5	75596664	75596664	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	75596664	75596664	T	A	SNP	SV2C	ENST00000502798	human	ensembl	74_37	+1	known	missense	c.1747	p.Y583N	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2	-	no_errors	SV2C	HGNC	ENSG00000122012				123	0	0	107	20	15.748
BHMT2	0	genome.wustl.edu	37	5	78379171	78379171	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	78379171	78379171	T	C	SNP	BHMT2	ENST00000255192	human	ensembl	74_37	+1	known	missense	c.755	p.F252S	1.000	pfam_S_MeTrfase,superfamily_S_MeTrfase,pirsf_Betaine-hCys_S-MeTrfase_BHMT,pfscan_S_MeTrfase	pfam_S_MeTrfase,superfamily_S_MeTrfase,pirsf_Betaine-hCys_S-MeTrfase_BHMT,pfscan_S_MeTrfase	-	no_errors	BHMT2	HGNC	ENSG00000132840				55	0	0	35	10	22.2222
JMY	0	genome.wustl.edu	37	5	78596523	78596523	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	78596523	78596523	A	G	SNP	JMY	ENST00000396137	human	ensembl	74_37	+1	known	missense	c.1718	p.Y573C	1.000	NULL	pfscan_WH2_dom	-	no_errors	JMY	HGNC	ENSG00000152409				47	0	0	46	10	17.8571
RPS23	0	genome.wustl.edu	37	5	81573573	81573573	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	81573573	81573573	C	T	SNP	RPS23	ENST00000296674	human	ensembl	74_37	-1	known	missense	c.103	p.A35T	1.000	pfam_Ribosomal_S12/S23,superfamily_NA-bd_OB-fold,pirsf_Ribosomal_S12/S23,tigrfam_Ribosomal_S23_euk/arc	pfam_Ribosomal_S12/S23,superfamily_NA-bd_OB-fold,pirsf_Ribosomal_S12/S23,tigrfam_Ribosomal_S23_euk/arc	-	no_errors	RPS23	HGNC	ENSG00000186468				142	0	0	133	23	14.7436
VCAN	0	genome.wustl.edu	37	5	82833950	82833950	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	82833950	82833950	G	A	SNP	VCAN	ENST00000265077	human	ensembl	74_37	+1	known	missense	c.5128	p.D1710N	0.001	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_EG-like_dom,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Link,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link	-	no_errors	VCAN	HGNC	ENSG00000038427				82	0	0	91	14	13.3333
EDIL3	0	genome.wustl.edu	37	5	83402507	83402507	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	83402507	83402507	G	A	SNP	EDIL3	ENST00000296591	human	ensembl	74_37	-1	known	missense	c.611	p.A204V	1.000	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Coagulation_fac_5/8-C_type_dom,pfam_EG-like_dom,pfam_EGF_extracell,superfamily_Galactose-bd-like,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Coagulation_fac_5/8-C_type_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	EDIL3	HGNC	ENSG00000164176				153	0	0	127	19	13.0137
NR2F1	0	genome.wustl.edu	37	5	92923897	92923897	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	92923897	92923897	C	T	SNP	NR2F1	ENST00000327111	human	ensembl	74_37	+1	known	silent	c.738	p.T246	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_COUP_TF,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Retinoid-X_rcpt/HNF4	-	no_errors	NR2F1	HGNC	ENSG00000175745				65	0	0	49	7	12.5
SPATA9	0	genome.wustl.edu	37	5	95011143	95011143	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	95011143	95011143	C	T	SNP	SPATA9	ENST00000274432	human	ensembl	74_37	-1	known	silent	c.351	p.A117	0.000	NULL	NULL	-	no_errors	SPATA9	HGNC	ENSG00000145757				58	0	0	39	8	17.0213
PRDM13	0	genome.wustl.edu	37	6	100062101	100062101	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	100062101	100062101	C	T	SNP	PRDM13	ENST00000369215	human	ensembl	74_37	+1	known	silent	c.1590	p.S530	0.926	NULL	smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM13	HGNC	ENSG00000112238				10	0	0	14	3	17.6471
SIM1	0	genome.wustl.edu	37	6	100897523	100897523	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	100897523	100897523	T	C	SNP	SIM1	ENST00000262901	human	ensembl	74_37	-1	known	missense	c.401	p.D134G	1.000	pfam_PAS_fold,superfamily_PAS,smart_PAS,pfscan_PAS	pfam_SIM_C,pfam_PAS_fold_3,pfam_PAS_fold,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	SIM1	HGNC	ENSG00000112246				45	0	0	35	4	10.2564
OSTM1	0	genome.wustl.edu	37	6	108395546	108395546	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	108395546	108395546	G	A	SNP	OSTM1	ENST00000193322	human	ensembl	74_37	-1	known	missense	c.310	p.R104C	1.000	pfam_Osteopetrosis-assoc_TM_1	pfam_Osteopetrosis-assoc_TM_1	-	no_errors	OSTM1	HGNC	ENSG00000081087				22	0	0	9	2	18.1818
ARMC2	0	genome.wustl.edu	37	6	109274297	109274297	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	109274297	109274297	G	A	SNP	ARMC2	ENST00000392644	human	ensembl	74_37	+1	known	missense	c.1658	p.R553H	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,smart_Armadillo	-	no_errors	ARMC2	HGNC	ENSG00000118690				31	0	0	24	5	17.2414
DDO	0	genome.wustl.edu	37	6	110736691	110736691	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	110736691	110736691	T	C	SNP	DDO	ENST00000368924	human	ensembl	74_37	-1	known	missense	c.59	p.Q20R	0.002	NULL	pfam_FAD-dep_OxRdtase	-	no_errors	DDO	HGNC	ENSG00000203797				69	0	0	55	12	17.9104
TUBE1	0	genome.wustl.edu	37	6	112397615	112397615	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	112397615	112397615	C	A	SNP	TUBE1	ENST00000368662	human	ensembl	74_37	-1	known	missense	c.546	p.E182D	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Epsilon_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Epsilon_tubulin,prints_Tubulin	-	no_errors	TUBE1	HGNC	ENSG00000074935				79	0	0	67	10	12.987
LAMA4	0	genome.wustl.edu	37	6	112430768	112430768	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	112430768	112430768	G	A	SNP	LAMA4	ENST00000230538	human	ensembl	74_37	-1	known	missense	c.5344	p.R1782C	0.971	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_II,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Focal_adhesion_kin_target_dom,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Laminin_G	-	no_errors	LAMA4	HGNC	ENSG00000112769				44	0	0	37	10	21.2766
RSPH4A	0	genome.wustl.edu	37	6	116938220	116938220	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	116938220	116938220	C	T	SNP	RSPH4A	ENST00000229554	human	ensembl	74_37	+1	known	missense	c.434	p.S145L	0.001	NULL	pfam_Radial_spoke	-	no_errors	RSPH4A	HGNC	ENSG00000111834				138	0	0	99	21	17.5
CLVS2	0	genome.wustl.edu	37	6	123369846	123369846	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	123369846	123369846	G	A	SNP	CLVS2	ENST00000275162	human	ensembl	74_37	+1	known	missense	c.644	p.R215Q	1.000	pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,prints_CRAL-bd_toc_tran	pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,prints_CRAL-bd_toc_tran	-	no_errors	CLVS2	HGNC	ENSG00000146352				136	0	0	77	34	30.6306
PTPRK	0	genome.wustl.edu	37	6	128297831	128297831	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	128297831	128297831	G	A	SNP	PTPRK	ENST00000368227	human	ensembl	74_37	-1	known	missense	c.3991	p.R1331W	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRK	HGNC	ENSG00000152894				42	0	0	36	7	16.2791
TMEM200A	0	genome.wustl.edu	37	6	130762848	130762848	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	130762848	130762848	C	T	SNP	TMEM200A	ENST00000296978	human	ensembl	74_37	+1	known	silent	c.1281	p.S427	1.000	NULL	pfam_DUF2371_TMEM200	-	no_errors	TMEM200A	HGNC	ENSG00000164484				100	0	0	81	22	21.3592
EYA4	0	genome.wustl.edu	37	6	133783564	133783564	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	133783564	133783564	G	A	SNP	EYA4	ENST00000355167	human	ensembl	74_37	+1	known	missense	c.529	p.V177I	1.000	NULL	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_EYA	-	no_errors	EYA4	HGNC	ENSG00000112319				88	0	0	71	25	26.0417
KIAA1244	0	genome.wustl.edu	37	6	138645253	138645253	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	138645253	138645253	G	A	SNP	KIAA1244	ENST00000251691	human	ensembl	74_37	+1	known	missense	c.4963	p.E1655K	1.000	NULL	pfam_DUF1981_Sec7_assoc,superfamily_ARM-type_fold,superfamily_Sec7_dom,smart_Sec7_dom	-	no_errors	KIAA1244	HGNC	ENSG00000112379				27	0	0	18	4	18.1818
HECA	0	genome.wustl.edu	37	6	139488112	139488112	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	139488112	139488112	C	T	SNP	HECA	ENST00000367658	human	ensembl	74_37	+1	known	silent	c.963	p.H321	1.000	NULL	superfamily_Glycoside_hydrolase_SF	-	no_errors	HECA	HGNC	ENSG00000112406				65	0	0	45	7	13.4615
HIVEP2	0	genome.wustl.edu	37	6	143093401	143093401	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	143093401	143093401	G	A	SNP	HIVEP2	ENST00000012134	human	ensembl	74_37	-1	known	silent	c.2475	p.C825	0.000	NULL	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP2	HGNC	ENSG00000010818				54	0	0	42	10	19.2308
STX11	0	genome.wustl.edu	37	6	144507854	144507854	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	144507854	144507854	C	T	SNP	STX11	ENST00000367568	human	ensembl	74_37	+1	known	silent	c.90	p.H30	0.000	NULL	pfam_T_SNARE_dom,pfam_Syntaxin_N,superfamily_t-SNARE,smart_Syntaxin_N,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX11	HGNC	ENSG00000135604				48	0	0	48	7	12.7273
FBXO30	0	genome.wustl.edu	37	6	146127423	146127423	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	146127423	146127423	A	G	SNP	FBXO30	ENST00000237281	human	ensembl	74_37	-1	known	missense	c.119	p.V40A	1.000	superfamily_TRAF-like	pfam_F-box_dom,superfamily_F-box_dom,superfamily_TRAF-like,pfscan_F-box_dom,pfscan_Znf_TRAF	-	no_errors	FBXO30	HGNC	ENSG00000118496				156	0	0	103	16	13.4454
SHPRH	0	genome.wustl.edu	37	6	146247425	146247425	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	146247425	146247425	T	C	SNP	SHPRH	ENST00000367503	human	ensembl	74_37	-1	known	missense	c.3236	p.H1079R	1.000	superfamily_P-loop_NTPase	pfam_SNF2_N,pfam_Histone_H1/H5_H15,superfamily_P-loop_NTPase,superfamily_Znf_FYVE_PHD,superfamily_WW_dom,smart_Helicase_ATP-bd,smart_Histone_H1/H5_H15,smart_Znf_PHD,smart_Znf_RING,smart_Helicase_C,pfscan_Znf_RING,pfscan_Helicase_C	-	no_errors	SHPRH	HGNC	ENSG00000146414				83	0	0	69	12	14.8148
SHPRH	0	genome.wustl.edu	37	6	146269406	146269406	+	Splice_Site	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	146269406	146269406	A	G	SNP	SHPRH	ENST00000367503	human	ensembl	74_37	-1	known	splice_site	c.1061+2	e4+2	1.000	-	-	-	no_errors	SHPRH	HGNC	ENSG00000146414				62	0	0	55	10	15.3846
STXBP5	0	genome.wustl.edu	37	6	147704088	147704088	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	147704088	147704088	C	T	SNP	STXBP5	ENST00000321680	human	ensembl	74_37	+1	known	missense	c.3368	p.A1123V	0.948	pfscan_Synaptobrevin	pfam_LLGL2,pfam_WD40_repeat,pfam_Lgl_C_dom,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,pfscan_Synaptobrevin,prints_Lethal2_giant	-	no_errors	STXBP5	HGNC	ENSG00000164506				99	0	0	85	18	17.4757
PLEKHG1	0	genome.wustl.edu	37	6	151161754	151161754	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	151161754	151161754	C	T	SNP	PLEKHG1	ENST00000358517	human	ensembl	74_37	+1	known	silent	c.3880	p.L1294	0.025	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG1	HGNC	ENSG00000120278				90	0	0	84	20	19.2308
MTHFD1L	0	genome.wustl.edu	37	6	151334921	151334921	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	151334921	151334921	G	A	SNP	MTHFD1L	ENST00000367321	human	ensembl	74_37	+1	known	missense	c.2272	p.A758T	1.000	pfam_Formate_THF_ligase,superfamily_P-loop_NTPase	pfam_Formate_THF_ligase,pfam_THF_DH/CycHdrlase_NAD-bd_dom,pfam_THF_DH/CycHdrlase_cat_dom,superfamily_P-loop_NTPase,prints_THF_DH/CycHdrlase	-	no_errors	MTHFD1L	HGNC	ENSG00000120254				46	0	0	24	9	27.2727
ARID1B	0	genome.wustl.edu	37	6	157405929	157405929	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	157405929	157405929	C	T	SNP	ARID1B	ENST00000367148	human	ensembl	74_37	+1	known	missense	c.2132	p.A711V	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1B	HGNC	ENSG00000049618				89	0	0	58	10	14.7059
SYNJ2	0	genome.wustl.edu	37	6	158490659	158490659	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	158490659	158490659	G	A	SNP	SYNJ2	ENST00000355585	human	ensembl	74_37	+1	known	missense	c.1894	p.V632I	1.000	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	pfam_Syja_N,pfam_DUF1866,pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc,pfscan_RRM_dom,pfscan_Syja_N	-	no_errors	SYNJ2	HGNC	ENSG00000078269				51	0	0	51	16	23.8806
TULP4	0	genome.wustl.edu	37	6	158834180	158834180	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	158834180	158834180	C	T	SNP	TULP4	ENST00000367097	human	ensembl	74_37	+1	known	silent	c.336	p.Y112	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_Tubby_C,pfam_SOCS_C,pfam_WD40_repeat,superfamily_Tubby_C-like,superfamily_WD40_repeat_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_WD40_repeat,smart_SOCS_C,pfscan_SOCS_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TULP4	HGNC	ENSG00000130338				32	0	0	31	6	16.2162
TULP4	0	genome.wustl.edu	37	6	158923412	158923412	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	158923412	158923412	G	A	SNP	TULP4	ENST00000367097	human	ensembl	74_37	+1	known	missense	c.2717	p.R906Q	0.998	NULL	pfam_Tubby_C,pfam_SOCS_C,pfam_WD40_repeat,superfamily_Tubby_C-like,superfamily_WD40_repeat_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_WD40_repeat,smart_SOCS_C,pfscan_SOCS_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TULP4	HGNC	ENSG00000130338				63	0	0	45	14	23.7288
SYTL3	0	genome.wustl.edu	37	6	159178316	159178316	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	159178316	159178316	G	A	SNP	SYTL3	ENST00000297239	human	ensembl	74_37	+1	known	missense	c.1211	p.R404Q	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,smart_C2_dom,pfscan_C2_dom,pfscan_Znf_FYVE-typ	-	no_errors	SYTL3	HGNC	ENSG00000164674				44	0	0	29	8	21.6216
PNLDC1	0	genome.wustl.edu	37	6	160227084	160227084	+	Silent	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	160227084	160227084	A	G	SNP	PNLDC1	ENST00000610273	human	ensembl	74_37	+1	known	silent	c.498	p.E166	0.999	pfam_RNase_CAF1,superfamily_RNaseH-like_dom	pfam_RNase_CAF1,superfamily_RNaseH-like_dom	-	no_errors	PNLDC1	HGNC	ENSG00000146453				45	0	0	35	14	28.5714
MYLIP	0	genome.wustl.edu	37	6	16143371	16143371	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	16143371	16143371	C	T	SNP	MYLIP	ENST00000356840	human	ensembl	74_37	+1	known	silent	c.585	p.S195	0.742	pfscan_FERM_domain,prints_Ez/rad/moesin_like	pfam_FERM_N,pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,pfscan_Znf_RING,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	MYLIP	HGNC	ENSG00000007944				103	0	0	84	14	14.2857
AGPAT4	0	genome.wustl.edu	37	6	161560485	161560485	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	161560485	161560485	C	T	SNP	AGPAT4	ENST00000320285	human	ensembl	74_37	-1	known	silent	c.1011	p.T337	1.000	NULL	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase	-	no_errors	AGPAT4	HGNC	ENSG00000026652				111	0	0	63	6	8.69565
AGPAT4	0	genome.wustl.edu	37	6	161587387	161587387	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	161587387	161587387	C	T	SNP	AGPAT4	ENST00000320285	human	ensembl	74_37	-1	known	missense	c.241	p.A81T	0.001	NULL	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase	-	no_errors	AGPAT4	HGNC	ENSG00000026652				43	0	0	32	6	15.7895
GMDS	0	genome.wustl.edu	37	6	1624443	1624443	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	1624443	1624443	G	A	SNP	GMDS	ENST00000380815	human	ensembl	74_37	-1	known	silent	c.1080	p.H360	0.378	tigrfam_GDP_Man_deHydtase	pfam_Epimerase_deHydtase,pfam_dTDP_dehydrorham_reduct,tigrfam_GDP_Man_deHydtase	-	no_errors	GMDS	HGNC	ENSG00000112699				19	0	0	6	2	25
UNC93A	0	genome.wustl.edu	37	6	167721271	167721271	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	167721271	167721271	G	A	SNP	UNC93A	ENST00000230256	human	ensembl	74_37	+1	known	silent	c.981	p.A327	0.000	superfamily_MFS_dom_general_subst_transpt	pfam_Ion_channel_UNC-93,superfamily_MFS_dom_general_subst_transpt	-	no_errors	UNC93A	HGNC	ENSG00000112494				67	0	0	46	12	20.6897
MLLT4	0	genome.wustl.edu	37	6	168315892	168315892	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	168315892	168315892	C	T	SNP	MLLT4	ENST00000366806	human	ensembl	74_37	+1	known	missense	c.2323	p.R775C	0.947	pfscan_Dilute	pfam_Ras-assoc,pfam_Dil_domain,pfam_PDZ,pfam_FHA_dom,superfamily_PDZ,superfamily_SMAD_FHA_domain,smart_Ras-assoc,smart_FHA_dom,smart_PDZ,pfscan_Dilute,pfscan_PDZ,pfscan_Ras-assoc	-	no_errors	MLLT4	HGNC	ENSG00000130396				103	0	0	75	16	17.5824
THBS2	0	genome.wustl.edu	37	6	169648753	169648753	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	169648753	169648753	G	A	SNP	THBS2	ENST00000366787	human	ensembl	74_37	-1	known	missense	c.368	p.T123M	1.000	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_Thrombospondin_C,pfam_Thrombospondin_1_rpt,pfam_VWF_C,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Thrombospondin_1_rpt,smart_Laminin_G,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	THBS2	HGNC	ENSG00000186340				73	0	0	22	4	15.3846
KIF13A	0	genome.wustl.edu	37	6	17837152	17837152	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	17837152	17837152	C	T	SNP	KIF13A	ENST00000259711	human	ensembl	74_37	-1	known	missense	c.1112	p.R371Q	1.000	NULL	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_KIF1B,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF13A	HGNC	ENSG00000137177				235	0	0	215	59	21.5328
E2F3	0	genome.wustl.edu	37	6	20481645	20481645	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	20481645	20481645	C	T	SNP	E2F3	ENST00000346618	human	ensembl	74_37	+1	known	silent	c.714	p.N238	1.000	pfam_E2F_TDP	pfam_E2F_TDP	-	no_errors	E2F3	HGNC	ENSG00000112242				182	0	0	126	21	14.2857
CDKAL1	0	genome.wustl.edu	37	6	20758841	20758841	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	20758841	20758841	C	T	SNP	CDKAL1	ENST00000274695	human	ensembl	74_37	+1	known	missense	c.484	p.R162C	1.000	tigrfam_MiaB-like_B,tigrfam_Methylthiotransferase	pfam_Methylthiotransferase_N,pfam_rSAM,pfam_TRAM_dom,smart_Elp3/MiaB/NifB,pfscan_TRAM_dom,tigrfam_MiaB-like_B,tigrfam_Methylthiotransferase	-	no_errors	CDKAL1	HGNC	ENSG00000145996				50	0	0	32	5	13.5135
TDP2	0	genome.wustl.edu	37	6	24653309	24653309	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	24653309	24653309	G	A	SNP	TDP2	ENST00000545995	human	ensembl	74_37	-1	known	nonsense	c.799	p.R267*	1.000	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,superfamily_UBA-like	-	no_errors	TDP2	HGNC	ENSG00000111802				263	1	0.378788	211	48	18.5328
LRRC16A	0	genome.wustl.edu	37	6	25600624	25600624	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	25600624	25600624	A	G	SNP	LRRC16A	ENST00000329474	human	ensembl	74_37	+1	novel	missense	c.3202	p.S1068G	0.996	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC16A	HGNC	ENSG00000079691				134	0	0	105	17	13.9344
HIST1H2BL	0	genome.wustl.edu	37	6	27775557	27775557	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	27775557	27775557	T	C	SNP	HIST1H2BL	ENST00000377401	human	ensembl	74_37	-1	known	missense	c.128	p.Y43C	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BL	HGNC	ENSG00000185130				232	1	0.429185	199	44	18.107
HIST1H2BN	0	genome.wustl.edu	37	6	27806599	27806599	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	27806599	27806599	G	T	SNP	HIST1H2BN	ENST00000396980	human	ensembl	74_37	+1	known	missense	c.160	p.G54C	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BN	HGNC	ENSG00000233822				288	0	0	223	49	18.0147
OR2B6	0	genome.wustl.edu	37	6	27925691	27925691	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	27925691	27925691	G	C	SNP	OR2B6	ENST00000244623	human	ensembl	74_37	+1	known	missense	c.673	p.V225L	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2B6	HGNC	ENSG00000124657				168	0	0	123	19	13.3803
TRIM15	0	genome.wustl.edu	37	6	30139991	30139991	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	30139991	30139991	C	T	SNP	TRIM15	ENST00000376694	human	ensembl	74_37	+1	known	silent	c.1263	p.Y421	0.124	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM15	HGNC	ENSG00000204610				12	0	0	8	3	27.2727
PPP1R10	0	genome.wustl.edu	37	6	30569738	30569738	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	30569738	30569738	G	A	SNP	PPP1R10	ENST00000376511	human	ensembl	74_37	-1	known	silent	c.2688	p.H896	0.704	NULL	pfam_TFIIS_N,pfam_Znf_CCCH,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,smart_Znf_CCCH	-	no_errors	PPP1R10	HGNC	ENSG00000204569				12	0	0	15	4	21.0526
C6orf136	0	genome.wustl.edu	37	6	30617500	30617500	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	30617500	30617500	A	G	SNP	C6orf136	ENST00000293604	human	ensembl	74_37	+1	known	missense	c.781	p.S261G	0.266	NULL	pfam_DUF2358	-	no_errors	C6orf136	HGNC	ENSG00000204564				124	0	0	119	16	11.8519
LTA	0	genome.wustl.edu	37	6	31541102	31541102	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	31541102	31541102	G	A	SNP	LTA	ENST00000418386	human	ensembl	74_37	+1	known	missense	c.250	p.D84N	0.176	pfam_TNF_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_TNF_dom,pfscan_TNF_dom,prints_TNF_beta,prints_TNF	pfam_TNF_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_TNF_dom,pfscan_TNF_dom,prints_TNF_beta,prints_TNF	-	no_errors	LTA	HGNC	ENSG00000226979				47	0	0	37	12	24.4898
PRRC2A	0	genome.wustl.edu	37	6	31593069	31593069	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	31593069	31593069	C	T	SNP	PRRC2A	ENST00000376007	human	ensembl	74_37	+1	known	silent	c.585	p.P195	1.000	NULL	pfam_BAT2_N	-	no_errors	PRRC2A	HGNC	ENSG00000204469				47	0	0	46	16	25.8065
C6orf47	0	genome.wustl.edu	37	6	31627518	31627518	+	Silent	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	31627518	31627518	A	G	SNP	C6orf47	ENST00000375911	human	ensembl	74_37	-1	known	silent	c.207	p.A69	0.001	NULL	NULL	-	no_errors	C6orf47	HGNC	ENSG00000204439				45	0	0	46	12	20.6897
VARS	0	genome.wustl.edu	37	6	31760564	31760564	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	31760564	31760564	A	T	SNP	VARS	ENST00000375663	human	ensembl	74_37	-1	known	missense	c.631	p.S211T	0.948	superfamily_Glutathione-S-Trfase_C-like	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Glutathione_S-Trfase_N,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_GST_C,superfamily_Val/Leu/Ile-tRNA-synth_edit,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Glutathione-S-Trfase_C-like,superfamily_tRNA-bd_arm,prints_Valyl-tRNA_ligase,tigrfam_Valyl-tRNA_ligase	-	no_errors	VARS	HGNC	ENSG00000204394				63	0	0	44	7	13.7255
SLC44A4	0	genome.wustl.edu	37	6	31838664	31838664	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	31838664	31838664	C	T	SNP	SLC44A4	ENST00000229729	human	ensembl	74_37	-1	known	missense	c.862	p.A288T	0.907	NULL	pfam_Choline_transptr-like	-	no_errors	SLC44A4	HGNC	ENSG00000204385				35	0	0	23	5	17.8571
EHMT2	0	genome.wustl.edu	37	6	31852688	31852688	+	Splice_Site	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	31852688	31852688	C	T	SNP	EHMT2	ENST00000395728	human	ensembl	74_37	-1	known	splice_site	c.2619+1	e18+1	1.000	-	-	-	no_errors	EHMT2	HGNC	ENSG00000204371				33	0	0	20	7	25.9259
STK19	0	genome.wustl.edu	37	6	31939920	31939920	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	31939920	31939920	C	T	SNP	STK19	ENST00000375333	human	ensembl	74_37	+1	known	silent	c.147	p.V49	0.000	NULL	pfam_Ser/Thr_kinase_19	-	no_errors	STK19	HGNC	ENSG00000204344				23	0	0	28	8	22.2222
TNXB	0	genome.wustl.edu	37	6	32039796	32039796	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	32039796	32039796	C	T	SNP	TNXB	ENST00000375247	human	ensembl	74_37	-1	known	missense	c.4961	p.R1654H	0.028	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477				27	0	0	26	6	18.75
TNXB	0	genome.wustl.edu	37	6	32039876	32039876	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	32039876	32039876	C	A	SNP	TNXB	ENST00000375247	human	ensembl	74_37	-1	known	missense	c.4881	p.Q1627H	0.449	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477				24	0	0	18	5	21.7391
TNXB	0	genome.wustl.edu	37	6	32065871	32065871	+	Silent	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	32065871	32065871	T	C	SNP	TNXB	ENST00000375247	human	ensembl	74_37	-1	known	silent	c.105	p.P35	0.149	NULL	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477				19	0	0	18	6	25
PRRT1	0	genome.wustl.edu	37	6	32117080	32117080	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	32117080	32117080	G	A	SNP	PRRT1	ENST00000211413	human	ensembl	74_37	-1	known	silent	c.840	p.I280	1.000	pfam_CD225/Dispanin_fam	pfam_CD225/Dispanin_fam	-	no_errors	PRRT1	HGNC	ENSG00000204314				14	0	0	10	3	23.0769
PPT2	0	genome.wustl.edu	37	6	32123717	32123717	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	32123717	32123717	C	A	SNP	PPT2	ENST00000361568	human	ensembl	74_37	+1	known	missense	c.521	p.P174H	0.959	pfam_Palm_thioest	pfam_Palm_thioest,prints_Palm_thioest	-	no_errors	PPT2	HGNC	ENSG00000221988				67	0	0	59	18	23.3766
EGFL8	0	genome.wustl.edu	37	6	32135028	32135028	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	32135028	32135028	G	A	SNP	EGFL8	ENST00000333845	human	ensembl	74_37	+1	known	missense	c.595	p.V199M	0.997	NULL	pfam_EMI_domain,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_EMI_domain	-	no_errors	EGFL8	HGNC	ENSG00000241404				29	0	0	21	7	25
GPSM3	0	genome.wustl.edu	37	6	32159535	32159535	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	32159535	32159535	C	T	SNP	GPSM3	ENST00000375040	human	ensembl	74_37	-1	known	missense	c.296	p.R99H	0.975	NULL	pfam_GoLoco_motif,smart_GoLoco_motif,pfscan_GoLoco_motif	-	no_errors	GPSM3	HGNC	ENSG00000213654				46	0	0	23	11	32.3529
NOTCH4	0	genome.wustl.edu	37	6	32168997	32168997	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	32168997	32168997	G	A	SNP	NOTCH4	ENST00000375023	human	ensembl	74_37	-1	known	missense	c.4036	p.R1346W	1.000	pirsf_Notch	pirsf_Notch,pfam_EG-like_dom,pfam_Ankyrin_rpt,pfam_EGF-like_Ca-bd_dom,pfam_Notch_dom,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_4,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH4	HGNC	ENSG00000204301				51	0	0	21	11	34.375
PSMB8	0	genome.wustl.edu	37	6	32809478	32809478	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	32809478	32809478	G	T	SNP	PSMB8	ENST00000374882	human	ensembl	74_37	-1	known	missense	c.572	p.T191N	0.997	pfam_Proteasome_sua/b	pfam_Proteasome_sua/b,prints_Pept_T1A_subB	-	no_errors	PSMB8	HGNC	ENSG00000204264				156	0	0	127	22	14.7651
TAPSAR1	0	genome.wustl.edu	37	6	32813337	32813337	+	RNA	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	32813337	32813337	C	T	SNP	TAPSAR1	ENST00000412095	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.036	-	-	-	no_errors	TAPSAR1	HGNC	ENSG00000204261				26	0	0	37	3	7.5
ITPR3	0	genome.wustl.edu	37	6	33638235	33638235	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	33638235	33638235	G	A	SNP	ITPR3	ENST00000374316	human	ensembl	74_37	+1	known	missense	c.2323	p.A775T	1.000	prints_InsP3_rcpt-bd	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR3	HGNC	ENSG00000096433				94	0	0	73	19	20.6522
UHRF1BP1	0	genome.wustl.edu	37	6	34826613	34826613	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	34826613	34826613	G	A	SNP	UHRF1BP1	ENST00000192788	human	ensembl	74_37	+1	known	missense	c.2480	p.R827H	0.002	NULL	NULL	-	no_errors	UHRF1BP1	HGNC	ENSG00000065060				222	0	0	173	45	20.6422
SCUBE3	0	genome.wustl.edu	37	6	35200656	35200656	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	35200656	35200656	G	A	SNP	SCUBE3	ENST00000394681	human	ensembl	74_37	+1	known	missense	c.499	p.G167S	1.000	smart_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_EG-like_dom,pfam_CUB_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom,prints_Thrombomodulin	-	no_errors	SCUBE3	HGNC	ENSG00000146197				129	0	0	95	29	23.3871
DNAH8	0	genome.wustl.edu	37	6	38828371	38828371	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	38828371	38828371	A	G	SNP	DNAH8	ENST00000359357	human	ensembl	74_37	+1	known	missense	c.5446	p.T1816A	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721				42	0	0	40	5	11.1111
TREML1	0	genome.wustl.edu	37	6	41121543	41121543	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	41121543	41121543	C	T	SNP	TREML1	ENST00000426005	human	ensembl	74_37	-1	known	missense	c.329	p.R110K	0.000	NULL	pfam_Ig_V-set	-	no_errors	TREML1	HGNC	ENSG00000161911				56	0	0	48	12	20
FOXP4	0	genome.wustl.edu	37	6	41558999	41558999	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	41558999	41558999	A	G	SNP	FOXP4	ENST00000307972	human	ensembl	74_37	+1	known	missense	c.1475	p.E492G	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXP4	HGNC	ENSG00000137166				17	0	0	10	6	37.5
GUCA1A	0	genome.wustl.edu	37	6	42146094	42146094	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	42146094	42146094	G	A	SNP	GUCA1A	ENST00000053469	human	ensembl	74_37	+1	known	missense	c.278	p.R93H	1.000	pfam_EF_hand_dom,pfam_SPARC/Testican_Ca-bd-dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	pfam_EF_hand_dom,pfam_SPARC/Testican_Ca-bd-dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	-	no_errors	GUCA1A	HGNC	ENSG00000048545				133	0	0	80	26	24.5283
CUL9	0	genome.wustl.edu	37	6	43167106	43167106	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	43167106	43167106	C	T	SNP	CUL9	ENST00000252050	human	ensembl	74_37	+1	known	silent	c.3153	p.S1051	0.979	superfamily_ARM-type_fold	pfam_Cullin_N,pfam_CPH_domain,pfam_Znf_C6HC,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,superfamily_UBA-like,smart_Cullin_neddylation_domain,smart_Znf_C6HC,pfscan_Znf_RING,pfscan_Cullin_homology	-	no_errors	CUL9	HGNC	ENSG00000112659				112	0	0	87	20	18.6916
CUL9	0	genome.wustl.edu	37	6	43167827	43167827	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	43167827	43167827	C	T	SNP	CUL9	ENST00000252050	human	ensembl	74_37	+1	known	missense	c.3317	p.T1106I	0.002	superfamily_Galactose-bd-like	pfam_Cullin_N,pfam_CPH_domain,pfam_Znf_C6HC,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,superfamily_UBA-like,smart_Cullin_neddylation_domain,smart_Znf_C6HC,pfscan_Znf_RING,pfscan_Cullin_homology	-	no_errors	CUL9	HGNC	ENSG00000112659				51	0	0	59	10	14.4928
TTBK1	0	genome.wustl.edu	37	6	43230531	43230531	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	43230531	43230531	C	T	SNP	TTBK1	ENST00000259750	human	ensembl	74_37	+1	known	missense	c.1429	p.R477W	0.863	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TTBK1	HGNC	ENSG00000146216				15	0	0	9	3	25
ZNF318	0	genome.wustl.edu	37	6	43322422	43322422	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	43322422	43322422	G	A	SNP	ZNF318	ENST00000361428	human	ensembl	74_37	-1	known	missense	c.2650	p.R884C	1.000	NULL	smart_Znf_U1	-	no_errors	ZNF318	HGNC	ENSG00000171467				99	0	0	71	24	25.2632
HSP90AB1	0	genome.wustl.edu	37	6	44219206	44219206	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	44219206	44219206	G	A	SNP	HSP90AB1	ENST00000353801	human	ensembl	74_37	+1	known	missense	c.1175	p.R392Q	1.000	pfam_Hsp90_fam,superfamily_Ribosomal_S5_D2-typ_fold,pirsf_Hsp90_fam	pfam_Hsp90_fam,pfam_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_HATPase_ATP-bd,smart_HATPase_ATP-bd,pirsf_Hsp90_fam,prints_Hsp90_N	-	no_errors	HSP90AB1	HGNC	ENSG00000096384				30	0	0	33	5	13.1579
CDC5L	0	genome.wustl.edu	37	6	44376250	44376250	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	44376250	44376250	G	A	SNP	CDC5L	ENST00000371477	human	ensembl	74_37	+1	known	missense	c.973	p.E325K	1.000	pfam_DUF3351	pfam_DUF3351,pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	CDC5L	HGNC	ENSG00000096401				93	0	0	95	18	15.9292
CDYL	0	genome.wustl.edu	37	6	4935952	4935952	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	4935952	4935952	A	G	SNP	CDYL	ENST00000328908	human	ensembl	74_37	+1	known	missense	c.1057	p.T353A	1.000	NULL	pfam_Crotonase_core_superfam,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CDYL	HGNC	ENSG00000153046				110	0	0	83	24	22.4299
DST	0	genome.wustl.edu	37	6	56382029	56382029	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	56382029	56382029	G	A	SNP	DST	ENST00000370754	human	ensembl	74_37	-1	known	silent	c.18231	p.T6077	0.970	pfam_Spectrin_repeat,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	DST	HGNC	ENSG00000151914				157	0	0	148	26	14.9425
KIAA1586	0	genome.wustl.edu	37	6	56917834	56917834	+	Silent	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	56917834	56917834	T	C	SNP	KIAA1586	ENST00000370733	human	ensembl	74_37	+1	known	silent	c.537	p.H179	0.213	NULL	superfamily_RNaseH-like_dom	-	no_errors	KIAA1586	HGNC	ENSG00000168116				98	0	0	124	12	8.82353
F13A1	0	genome.wustl.edu	37	6	6197549	6197549	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	6197549	6197549	A	G	SNP	F13A1	ENST00000264870	human	ensembl	74_37	-1	known	missense	c.1123	p.C375R	1.000	pfam_Transglutaminase-like,smart_Transglutaminase-like	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	F13A1	HGNC	ENSG00000124491				47	0	0	31	7	18.4211
BAI3	0	genome.wustl.edu	37	6	70042837	70042837	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	70042837	70042837	T	G	SNP	BAI3	ENST00000370598	human	ensembl	74_37	+1	known	missense	c.3125	p.L1042W	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_CUB_dom,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI3	HGNC	ENSG00000135298				40	0	0	44	7	13.7255
OGFRL1	0	genome.wustl.edu	37	6	72011673	72011673	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	72011673	72011673	A	G	SNP	OGFRL1	ENST00000370435	human	ensembl	74_37	+1	known	missense	c.1277	p.N426S	0.000	NULL	pfam_OGF_rcpt	-	no_errors	OGFRL1	HGNC	ENSG00000119900				185	0	0	168	33	16.4179
RIMS1	0	genome.wustl.edu	37	6	73110441	73110441	+	RNA	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	73110441	73110441	A	G	SNP	RIMS1	ENST00000431478	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RIMS1	HGNC	ENSG00000079841				37	0	0	52	7	11.8644
KCNQ5	0	genome.wustl.edu	37	6	73787159	73787159	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	73787159	73787159	G	A	SNP	KCNQ5	ENST00000402622	human	ensembl	74_37	+1	known	missense	c.731	p.R244H	1.000	pfam_Ion_trans_dom,prints_K_chnl	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ5	HGNC	ENSG00000185760				52	0	0	45	10	18.1818
FILIP1	0	genome.wustl.edu	37	6	76022149	76022149	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	76022149	76022149	C	T	SNP	FILIP1	ENST00000237172	human	ensembl	74_37	-1	known	silent	c.3399	p.P1133	0.003	NULL	pfam_Cortactin-binding_p2_N,prints_Tropomyosin	-	no_errors	FILIP1	HGNC	ENSG00000118407				138	0	0	100	25	20
KIAA1009	0	genome.wustl.edu	37	6	84872863	84872863	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	84872863	84872863	C	A	SNP	KIAA1009	ENST00000403245	human	ensembl	74_37	-1	known	missense	c.2512	p.G838C	1.000	NULL	NULL	-	no_errors	KIAA1009	HGNC	ENSG00000135315				88	0	0	100	17	14.5299
AKIRIN2	0	genome.wustl.edu	37	6	88391397	88391397	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	88391397	88391397	G	A	SNP	AKIRIN2	ENST00000257787	human	ensembl	74_37	-1	known	missense	c.320	p.P107L	1.000	NULL	NULL	-	no_errors	AKIRIN2	HGNC	ENSG00000135334				58	0	0	62	10	13.8889
CNR1	0	genome.wustl.edu	37	6	88854349	88854349	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	88854349	88854349	G	A	SNP	CNR1	ENST00000369499	human	ensembl	74_37	-1	known	silent	c.645	p.Y215	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pirsf_Canbinoid_rcpt_1,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pirsf_Canbinoid_rcpt_1,pfscan_GPCR_Rhodpsn_7TM,prints_Canbinoid_rcpt_1,prints_Cnbnoid_rcpt,prints_GPCR_Rhodpsn	-	no_errors	CNR1	HGNC	ENSG00000118432				32	0	0	43	10	18.8679
CASP8AP2	0	genome.wustl.edu	37	6	90578735	90578735	+	RNA	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	90578735	90578735	C	T	SNP	CASP8AP2	ENST00000237177	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.217	-	-	-	no_errors	CASP8AP2	HGNC	ENSG00000118412				34	0	0	33	6	15.3846
BACH2	0	genome.wustl.edu	37	6	90660960	90660960	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	90660960	90660960	T	C	SNP	BACH2	ENST00000257749	human	ensembl	74_37	-1	known	missense	c.865	p.I289V	1.000	NULL	pfam_BTB_POZ,pfam_bZIP,superfamily_BTB/POZ_fold,superfamily_TF_DNA-bd,smart_BTB/POZ-like,smart_bZIP,pfscan_BTB/POZ-like,pfscan_bZIP	-	no_errors	BACH2	HGNC	ENSG00000112182				66	0	0	59	9	13.2353
MAP3K7	0	genome.wustl.edu	37	6	91257878	91257878	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	91257878	91257878	G	A	SNP	MAP3K7	ENST00000369329	human	ensembl	74_37	-1	known	missense	c.968	p.A323V	0.978	pirsf_MAPKKK7	pirsf_MAPKKK7,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K7	HGNC	ENSG00000135341				80	0	0	77	8	9.41176
AGFG2	0	genome.wustl.edu	37	7	100151089	100151089	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	100151089	100151089	C	T	SNP	AGFG2	ENST00000300176	human	ensembl	74_37	+1	known	missense	c.551	p.P184L	0.986	NULL	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGFG2	HGNC	ENSG00000106351				83	0	0	54	9	14.2857
ACTL6B	0	genome.wustl.edu	37	7	100247736	100247736	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	100247736	100247736	T	A	SNP	ACTL6B	ENST00000160382	human	ensembl	74_37	-1	known	missense	c.392	p.E131V	1.000	pfam_Actin-related,smart_Actin-related,prints_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTL6B	HGNC	ENSG00000077080				47	0	0	33	9	21.4286
TRIP6	0	genome.wustl.edu	37	7	100469244	100469244	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	100469244	100469244	C	A	SNP	TRIP6	ENST00000200457	human	ensembl	74_37	+1	known	missense	c.1079	p.P360H	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	TRIP6	HGNC	ENSG00000087077				59	0	0	39	10	20.4082
MUC17	0	genome.wustl.edu	37	7	100677874	100677874	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	100677874	100677874	G	A	SNP	MUC17	ENST00000306151	human	ensembl	74_37	+1	known	silent	c.3177	p.T1059	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	MUC17	HGNC	ENSG00000169876				420	1	0.23753	335	87	20.6161
CUX1	0	genome.wustl.edu	37	7	101459368	101459368	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	101459368	101459368	C	T	SNP	CUX1	ENST00000360264	human	ensembl	74_37	+1	known	silent	c.58	p.L20	1.000	NULL	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_LemA-like_dom,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	CUX1	HGNC	ENSG00000257923				48	0	0	42	6	12.5
ORAI2	0	genome.wustl.edu	37	7	102086989	102086989	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	102086989	102086989	G	A	SNP	ORAI2	ENST00000356387	human	ensembl	74_37	+1	known	silent	c.255	p.T85	0.992	pfam_CRAC_channel	pfam_CRAC_channel	-	no_errors	ORAI2	HGNC	ENSG00000160991				38	0	0	14	4	22.2222
DPY19L2P2	0	genome.wustl.edu	37	7	102912302	102912302	+	RNA	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	102912302	102912302	A	G	SNP	DPY19L2P2	ENST00000312132	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.996	-	-	-	no_errors	DPY19L2P2	HGNC	ENSG00000170629				42	0	0	44	5	10.2041
PSMC2	0	genome.wustl.edu	37	7	103002424	103002424	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	103002424	103002424	C	T	SNP	PSMC2	ENST00000292644	human	ensembl	74_37	+1	known	missense	c.311	p.A104V	1.000	NULL	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	-	no_errors	PSMC2	HGNC	ENSG00000161057				85	0	0	66	18	21.4286
RELN	0	genome.wustl.edu	37	7	103138557	103138557	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	103138557	103138557	G	A	SNP	RELN	ENST00000424685	human	ensembl	74_37	-1	known	missense	c.8810	p.A2937V	1.000	superfamily_Sialidases	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Sialidases,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056				117	0	0	110	20	15.3846
COG5	0	genome.wustl.edu	37	7	106851578	106851578	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	106851578	106851578	G	A	SNP	COG5	ENST00000297135	human	ensembl	74_37	-1	known	missense	c.2354	p.T785M	0.994	NULL	pfam_Cog5	-	no_errors	COG5	HGNC	ENSG00000164597				81	0	0	60	14	18.9189
CFTR	0	genome.wustl.edu	37	7	117232480	117232480	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	117232480	117232480	C	T	SNP	CFTR	ENST00000003084	human	ensembl	74_37	+1	known	silent	c.2259	p.S753	0.001	tigrfam_cAMP_cl_channel	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_CysFib_conduc_TM,tigrfam_cAMP_cl_channel	-	no_errors	CFTR	HGNC	ENSG00000001626				31	0	0	34	9	20.9302
CPED1	0	genome.wustl.edu	37	7	120629693	120629693	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	120629693	120629693	G	A	SNP	CPED1	ENST00000310396	human	ensembl	74_37	+1	known	silent	c.18	p.V6	0.000	NULL	NULL	-	no_errors	CPED1	HGNC	ENSG00000106034				107	0	0	59	11	15.7143
ASB15	0	genome.wustl.edu	37	7	123267253	123267253	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	123267253	123267253	C	T	SNP	ASB15	ENST00000275699	human	ensembl	74_37	+1	known	silent	c.787	p.L263	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C,prints_Ankyrin_rpt	-	no_errors	ASB15	HGNC	ENSG00000146809				52	0	0	32	10	23.8095
FLNC	0	genome.wustl.edu	37	7	128484899	128484899	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	128484899	128484899	G	A	SNP	FLNC	ENST00000325888	human	ensembl	74_37	+1	known	missense	c.3380	p.G1127D	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNC	HGNC	ENSG00000128591				86	0	0	50	19	27.5362
AHCYL2	0	genome.wustl.edu	37	7	129019487	129019487	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	129019487	129019487	G	C	SNP	AHCYL2	ENST00000325006	human	ensembl	74_37	+1	known	missense	c.372	p.Q124H	0.980	NULL	pfam_Adenosylhomocysteinase,pfam_Ado_hCys_hydrolase_NAD-bd,pfam_D-isomer_2_OHA_DH_NAD-bd,tigrfam_Adenosylhomocysteinase	-	no_errors	AHCYL2	HGNC	ENSG00000158467				48	0	0	32	6	15.7895
STRIP2	0	genome.wustl.edu	37	7	129096401	129096401	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	129096401	129096401	C	T	SNP	STRIP2	ENST00000249344	human	ensembl	74_37	+1	known	missense	c.956	p.P319L	1.000	pfam_N1221	pfam_DUF3402,pfam_N1221	-	no_errors	STRIP2	HGNC	ENSG00000128578				59	0	0	47	15	24.1935
TSGA13	0	genome.wustl.edu	37	7	130364019	130364019	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	130364019	130364019	A	G	SNP	TSGA13	ENST00000356588	human	ensembl	74_37	-1	known	missense	c.361	p.S121P	0.484	NULL	NULL	-	no_errors	TSGA13	HGNC	ENSG00000213265				102	0	0	91	9	9
PLXNA4	0	genome.wustl.edu	37	7	131866287	131866287	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	131866287	131866287	G	A	SNP	PLXNA4	ENST00000321063	human	ensembl	74_37	-1	known	silent	c.3345	p.P1115	0.007	superfamily_Ig_E-set,smart_IPT	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA4	HGNC	ENSG00000221866				80	0	0	45	14	23.7288
LRGUK	0	genome.wustl.edu	37	7	133906546	133906546	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	133906546	133906546	A	G	SNP	LRGUK	ENST00000285928	human	ensembl	74_37	+1	known	missense	c.1859	p.H620R	0.000	NULL	pfam_GK/Ca_channel_bsu,pfam_Leu-rich_rpt,superfamily_P-loop_NTPase,smart_GK/Ca_channel_bsu,pfscan_Guanylate_kin-like	-	no_errors	LRGUK	HGNC	ENSG00000155530				86	0	0	77	11	12.5
AKR1B1	0	genome.wustl.edu	37	7	134135578	134135578	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	134135578	134135578	T	C	SNP	AKR1B1	ENST00000285930	human	ensembl	74_37	-1	known	missense	c.311	p.Y104C	1.000	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	-	no_errors	AKR1B1	HGNC	ENSG00000085662				53	0	0	41	9	18
DGKI	0	genome.wustl.edu	37	7	137172408	137172408	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	137172408	137172408	C	T	SNP	DGKI	ENST00000288490	human	ensembl	74_37	-1	known	missense	c.2330	p.R777H	1.000	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	DGKI	HGNC	ENSG00000157680				256	1	0.389105	200	41	17.0124
ATP6V0A4	0	genome.wustl.edu	37	7	138418958	138418958	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	138418958	138418958	C	T	SNP	ATP6V0A4	ENST00000310018	human	ensembl	74_37	-1	known	silent	c.1614	p.S538	0.956	pfam_V-ATPase_116kDa_su	pfam_V-ATPase_116kDa_su	-	no_errors	ATP6V0A4	HGNC	ENSG00000105929				95	0	0	63	16	20.2532
TTC26	0	genome.wustl.edu	37	7	138865925	138865925	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	138865925	138865925	T	A	SNP	TTC26	ENST00000464848	human	ensembl	74_37	+1	known	missense	c.1400	p.I467N	1.000	smart_TPR_repeat	smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC26	HGNC	ENSG00000105948				76	0	0	59	23	28.0488
BRAF	0	genome.wustl.edu	37	7	140453128	140453128	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	140453128	140453128	G	A	SNP	BRAF	ENST00000288602	human	ensembl	74_37	-1	known	nonsense	c.1807	p.R603*	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Raf-like_ras-bd,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,smart_Raf-like_ras-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Raf-like_ras-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	BRAF	HGNC	ENSG00000157764				79	0	0	64	21	24.7059
ENSG00000257743	0	genome.wustl.edu	37	7	141843582	141843582	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	141843582	141843582	C	T	SNP	ENSG00000257743	ENST00000477922	human	ensembl	74_37	+1	putative	missense	c.1331	p.P444L	0.000	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,superfamily_P_trefoil,smart_P_trefoil	-	no_errors	RP11-1220K2.2	Clone_based_vega_gene	ENSG00000257743				10	0	0	1	2	66.6667
OR9A2	0	genome.wustl.edu	37	7	142723873	142723873	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	142723873	142723873	A	G	SNP	OR9A2	ENST00000350513	human	ensembl	74_37	-1	known	missense	c.347	p.V116A	0.986	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR9A2	HGNC	ENSG00000179468				85	0	0	59	11	15.7143
TPK1	0	genome.wustl.edu	37	7	144320278	144320278	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	144320278	144320278	A	G	SNP	TPK1	ENST00000360057	human	ensembl	74_37	-1	known	missense	c.335	p.I112T	1.000	pfam_TPK_catalytic,superfamily_TPK_catalytic,pirsf_Thiamin_pyrophosphokinase_euk,tigrfam_Thi_PPkinase	pfam_TPK_catalytic,pfam_Thiamin_PyroPKinase_B1-bd,superfamily_TPK_catalytic,superfamily_Thiamin_PyroPKinase_B1-bd,pirsf_Thiamin_pyrophosphokinase_euk,tigrfam_Thi_PPkinase	-	no_errors	TPK1	HGNC	ENSG00000196511				148	0	0	145	37	20.3297
ZNF398	0	genome.wustl.edu	37	7	148876693	148876693	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	148876693	148876693	C	T	SNP	ZNF398	ENST00000540950	human	ensembl	74_37	+1	known	missense	c.1744	p.R582C	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_DUF3669_Znf,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	ZNF398	HGNC	ENSG00000197024				69	0	0	38	8	17.3913
ZNF777	0	genome.wustl.edu	37	7	149129387	149129387	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	149129387	149129387	G	A	SNP	ZNF777	ENST00000247930	human	ensembl	74_37	-1	known	missense	c.1976	p.T659M	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_DUF3669_Znf,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF777	HGNC	ENSG00000196453				121	0	0	82	19	18.8119
ZNF777	0	genome.wustl.edu	37	7	149133705	149133705	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	149133705	149133705	C	T	SNP	ZNF777	ENST00000247930	human	ensembl	74_37	-1	known	missense	c.1300	p.E434K	0.986	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_DUF3669_Znf,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF777	HGNC	ENSG00000196453				48	0	0	35	4	10.2564
SSPO	0	genome.wustl.edu	37	7	149485990	149485990	+	RNA	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	149485990	149485990	C	T	SNP	SSPO	ENST00000262089	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.648	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558				26	0	0	15	7	31.8182
SSPO	0	genome.wustl.edu	37	7	149508064	149508064	+	RNA	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	149508064	149508064	C	T	SNP	SSPO	ENST00000378016	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.485	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558				21	0	0	15	7	31.8182
ZNF862	0	genome.wustl.edu	37	7	149547397	149547397	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	149547397	149547397	C	T	SNP	ZNF862	ENST00000223210	human	ensembl	74_37	+1	known	missense	c.1087	p.R363W	0.999	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Krueppel-associated_box,pfam_HATC_dom_C,superfamily_Krueppel-associated_box,superfamily_RNaseH-like_dom,smart_Krueppel-associated_box,smart_Znf_TTF,pfscan_Krueppel-associated_box	-	no_errors	ZNF862	HGNC	ENSG00000106479				29	0	0	13	7	35
CHPF2	0	genome.wustl.edu	37	7	150935265	150935265	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	150935265	150935265	G	A	SNP	CHPF2	ENST00000035307	human	ensembl	74_37	+1	known	missense	c.1817	p.R606H	1.000	pfam_Chond_GalNAc	pfam_Chond_GalNAc,pfam_Fringe-like	-	no_errors	CHPF2	HGNC	ENSG00000033100				52	0	0	44	4	8.33333
AGMO	0	genome.wustl.edu	37	7	15458233	15458233	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	15458233	15458233	C	T	SNP	AGMO	ENST00000342526	human	ensembl	74_37	-1	known	missense	c.559	p.A187T	1.000	pfam_Fatty_acid_hydroxylase	pfam_Fatty_acid_hydroxylase	-	no_errors	AGMO	HGNC	ENSG00000187546				54	0	0	38	4	9.52381
HTR5A	0	genome.wustl.edu	37	7	154862889	154862889	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	154862889	154862889	A	G	SNP	HTR5A	ENST00000287907	human	ensembl	74_37	+1	known	missense	c.280	p.M94V	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_5HT5A_rcpt,prints_5HT_rcpt	-	no_errors	HTR5A	HGNC	ENSG00000157219				20	0	0	15	4	21.0526
PTPRN2	0	genome.wustl.edu	37	7	157959878	157959878	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	157959878	157959878	G	A	SNP	PTPRN2	ENST00000404321	human	ensembl	74_37	-1	known	missense	c.724	p.R242W	0.001	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Receptor_IA-2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRN2	HGNC	ENSG00000155093				25	0	0	28	5	15.1515
WDR60	0	genome.wustl.edu	37	7	158734693	158734693	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	158734693	158734693	G	A	SNP	WDR60	ENST00000407559	human	ensembl	74_37	+1	known	silent	c.2856	p.T952	0.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR60	HGNC	ENSG00000126870				44	0	0	34	6	15
MPP6	0	genome.wustl.edu	37	7	24681374	24681374	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	24681374	24681374	A	G	SNP	MPP6	ENST00000222644	human	ensembl	74_37	+1	known	missense	c.157	p.S53G	1.000	pfam_L27_C,smart_L27,pfscan_L27	pfam_GK/Ca_channel_bsu,pfam_L27_C,pfam_SH3_2,pfam_PDZ,pfam_SH3_domain,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	MPP6	HGNC	ENSG00000105926				87	0	0	83	7	7.77778
AMZ1	0	genome.wustl.edu	37	7	2740094	2740094	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	2740094	2740094	G	A	SNP	AMZ1	ENST00000312371	human	ensembl	74_37	+1	known	silent	c.9	p.Q3	1.000	NULL	pfam_Pept_M54_archaemetzincn	-	no_errors	AMZ1	HGNC	ENSG00000174945				30	0	0	23	9	28.125
CCDC129	0	genome.wustl.edu	37	7	31592688	31592688	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	31592688	31592688	A	G	SNP	CCDC129	ENST00000451887	human	ensembl	74_37	+1	known	missense	c.128	p.E43G	0.237	NULL	NULL	-	no_errors	CCDC129	HGNC	ENSG00000180347				49	0	0	34	9	20.9302
PDE1C	0	genome.wustl.edu	37	7	32109997	32109997	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	32109997	32109997	C	T	SNP	PDE1C	ENST00000321453	human	ensembl	74_37	-1	known	silent	c.9	p.S3	0.603	NULL	pfam_PDEase_catalytic_dom,pfam_PDEase_N,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE1C	HGNC	ENSG00000154678				84	0	0	59	21	26.25
AVL9	0	genome.wustl.edu	37	7	33078502	33078502	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	33078502	33078502	C	T	SNP	AVL9	ENST00000404479	human	ensembl	74_37	+1	known	missense	c.1378	p.R460C	0.008	NULL	pfam_ABL9/DENND6_dom,pfam_DUF2347	-	no_errors	AVL9	HGNC	ENSG00000105778				9	0	0	7	4	36.3636
BBS9	0	genome.wustl.edu	37	7	33427709	33427709	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	33427709	33427709	G	A	SNP	BBS9	ENST00000242067	human	ensembl	74_37	+1	known	missense	c.2068	p.A690T	1.000	NULL	NULL	-	no_errors	BBS9	HGNC	ENSG00000122507				180	0	0	165	20	10.8108
ELMO1	0	genome.wustl.edu	37	7	37052934	37052934	+	Silent	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	37052934	37052934	T	C	SNP	ELMO1	ENST00000310758	human	ensembl	74_37	-1	known	silent	c.1407	p.E469	1.000	pfam_Engulfment_cell_motility_ELMO	pfam_DUF3361,pfam_Engulfment_cell_motility_ELMO,superfamily_ARM-type_fold	-	no_errors	ELMO1	HGNC	ENSG00000155849				77	0	0	49	12	19.6721
CDK13	0	genome.wustl.edu	37	7	40132832	40132832	+	Silent	SNP	G	G	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	40132832	40132832	G	C	SNP	CDK13	ENST00000181839	human	ensembl	74_37	+1	known	silent	c.3684	p.V1228	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK13	HGNC	ENSG00000065883				56	0	0	50	11	18.0328
GLI3	0	genome.wustl.edu	37	7	42005251	42005251	+	Silent	SNP	G	G	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	42005251	42005251	G	T	SNP	GLI3	ENST00000395925	human	ensembl	74_37	-1	known	silent	c.3420	p.G1140	0.620	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI3	HGNC	ENSG00000106571				70	0	0	44	9	16.9811
DDX56	0	genome.wustl.edu	37	7	44612618	44612618	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	44612618	44612618	C	T	SNP	DDX56	ENST00000258772	human	ensembl	74_37	-1	known	missense	c.254	p.G85D	0.483	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX56	HGNC	ENSG00000136271				147	0	0	107	17	13.7097
OGDH	0	genome.wustl.edu	37	7	44713473	44713473	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	44713473	44713473	C	T	SNP	OGDH	ENST00000222673	human	ensembl	74_37	+1	known	missense	c.721	p.P241S	1.000	pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	pfam_DH_E1,pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	-	no_errors	OGDH	HGNC	ENSG00000105953				126	0	0	86	20	18.8679
TNS3	0	genome.wustl.edu	37	7	47385887	47385887	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	47385887	47385887	A	T	SNP	TNS3	ENST00000311160	human	ensembl	74_37	-1	known	missense	c.2349	p.D783E	0.000	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_dom,smart_Tyr_Pase_cat,smart_SH2,smart_PTB/PI_dom,pfscan_SH2,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS3	HGNC	ENSG00000136205				38	0	0	36	3	7.69231
IKZF1	0	genome.wustl.edu	37	7	50467674	50467674	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	50467674	50467674	C	T	SNP	IKZF1	ENST00000331340	human	ensembl	74_37	+1	known	silent	c.909	p.N303	0.646	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	IKZF1	HGNC	ENSG00000185811				32	0	0	27	10	27.027
COBL	0	genome.wustl.edu	37	7	51096609	51096609	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	51096609	51096609	G	A	SNP	COBL	ENST00000395542	human	ensembl	74_37	-1	known	silent	c.2430	p.T810	0.000	NULL	pfam_Cordon-bleu_ubiquitin_domain,pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	COBL	HGNC	ENSG00000106078				62	0	0	49	7	12.5
ZNF680	0	genome.wustl.edu	37	7	63981628	63981628	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	63981628	63981628	A	T	SNP	ZNF680	ENST00000309683	human	ensembl	74_37	-1	known	missense	c.1504	p.S502T	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF680	HGNC	ENSG00000173041				75	0	0	76	4	5
VKORC1L1	0	genome.wustl.edu	37	7	65419074	65419074	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	65419074	65419074	C	T	SNP	VKORC1L1	ENST00000434382	human	ensembl	74_37	+1	novel	missense	c.208	p.R70C	0.915	NULL	pfam_VKOR	-	no_errors	VKORC1L1	HGNC	ENSG00000196715				94	0	0	77	11	12.5
ZDHHC4	0	genome.wustl.edu	37	7	6620233	6620233	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	6620233	6620233	T	C	SNP	ZDHHC4	ENST00000335965	human	ensembl	74_37	+1	known	missense	c.41	p.V14A	0.029	NULL	pfam_Znf_DHHC_palmitoyltrfase,superfamily_Cyt_c_Oxase_su1_dom,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC4	HGNC	ENSG00000136247				167	0	0	133	21	13.6364
ZNF12	0	genome.wustl.edu	37	7	6731401	6731401	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	6731401	6731401	G	A	SNP	ZNF12	ENST00000405858	human	ensembl	74_37	-1	known	missense	c.1172	p.S391L	0.557	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF12	HGNC	ENSG00000164631				69	0	0	51	13	20.3125
WBSCR17	0	genome.wustl.edu	37	7	71036282	71036282	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	71036282	71036282	G	T	SNP	WBSCR17	ENST00000333538	human	ensembl	74_37	+1	known	missense	c.975	p.M325I	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	WBSCR17	HGNC	ENSG00000185274				120	0	0	79	15	15.9574
TBL2	0	genome.wustl.edu	37	7	72988315	72988315	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	72988315	72988315	G	A	SNP	TBL2	ENST00000305632	human	ensembl	74_37	-1	known	silent	c.399	p.N133	0.680	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TBL2	HGNC	ENSG00000106638				52	0	0	40	5	11.1111
CLIP2	0	genome.wustl.edu	37	7	73778608	73778608	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	73778608	73778608	G	A	SNP	CLIP2	ENST00000223398	human	ensembl	74_37	+1	known	missense	c.1343	p.R448H	1.000	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_t-SNARE,pfscan_CAP-Gly_domain	-	no_errors	CLIP2	HGNC	ENSG00000106665				25	0	0	13	6	31.5789
POM121C	0	genome.wustl.edu	37	7	75053846	75053846	+	Silent	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	75053846	75053846	T	C	SNP	POM121C	ENST00000257665	human	ensembl	74_37	-1	known	silent	c.1560	p.S520	0.047	NULL	NULL	-	no_errors	POM121C	HGNC	ENSG00000135213				161	0	0	120	25	17.2414
YWHAG	0	genome.wustl.edu	37	7	75959484	75959484	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	75959484	75959484	C	T	SNP	YWHAG	ENST00000307630	human	ensembl	74_37	-1	known	missense	c.154	p.V52I	1.000	pfam_14-3-3_domain,superfamily_14-3-3_domain,smart_14-3-3_domain,pirsf_14-3-3,prints_14-3-3	pfam_14-3-3_domain,superfamily_14-3-3_domain,smart_14-3-3_domain,pirsf_14-3-3,prints_14-3-3	-	no_errors	YWHAG	HGNC	ENSG00000170027				102	0	0	63	8	11.2676
ZP3	0	genome.wustl.edu	37	7	76062907	76062907	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	76062907	76062907	C	T	SNP	ZP3	ENST00000394857	human	ensembl	74_37	+1	known	missense	c.656	p.A219V	1.000	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom,prints_ZP_dom	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	ZP3	HGNC	ENSG00000188372				95	0	0	60	15	20
CCDC146	0	genome.wustl.edu	37	7	76891552	76891552	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	76891552	76891552	G	T	SNP	CCDC146	ENST00000285871	human	ensembl	74_37	+1	known	missense	c.1101	p.M367I	1.000	NULL	NULL	-	no_errors	CCDC146	HGNC	ENSG00000135205				82	0	0	78	11	12.3596
GNAI1	0	genome.wustl.edu	37	7	79818534	79818534	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	79818534	79818534	A	G	SNP	GNAI1	ENST00000351004	human	ensembl	74_37	+1	known	missense	c.290	p.D97G	1.000	pfam_Gprotein_alpha_su,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_I,prints_Fungi_Gprotein_alpha	-	no_errors	GNAI1	HGNC	ENSG00000127955				62	0	0	51	4	7.27273
PCLO	0	genome.wustl.edu	37	7	82579728	82579728	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	82579728	82579728	G	A	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	silent	c.10176	p.S3392	0.997	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				57	0	0	58	5	7.93651
PCLO	0	genome.wustl.edu	37	7	82584025	82584025	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	82584025	82584025	G	T	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	missense	c.6244	p.P2082T	0.990	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				69	0	0	72	14	16.2791
SEMA3A	0	genome.wustl.edu	37	7	83764138	83764138	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	83764138	83764138	T	A	SNP	SEMA3A	ENST00000265362	human	ensembl	74_37	-1	known	missense	c.242	p.D81V	1.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Ig_sub,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA3A	HGNC	ENSG00000075213				71	0	0	68	14	17.0732
ABCB1	0	genome.wustl.edu	37	7	87196110	87196110	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	87196110	87196110	C	T	SNP	ABCB1	ENST00000265724	human	ensembl	74_37	-1	known	missense	c.521	p.R174Q	0.999	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB1	HGNC	ENSG00000085563				75	0	0	31	18	36.7347
ZNF804B	0	genome.wustl.edu	37	7	88964957	88964957	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	88964957	88964957	G	A	SNP	ZNF804B	ENST00000333190	human	ensembl	74_37	+1	known	silent	c.2661	p.R887	0.000	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804B	HGNC	ENSG00000182348				126	0	0	121	11	8.33333
STEAP1	0	genome.wustl.edu	37	7	89790129	89790129	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	89790129	89790129	C	T	SNP	STEAP1	ENST00000297205	human	ensembl	74_37	+1	known	missense	c.95	p.T32M	0.000	NULL	pfam_Fe3_Rdtase_TM_dom	-	no_errors	STEAP1	HGNC	ENSG00000164647				135	0	0	123	11	8.20896
PEX1	0	genome.wustl.edu	37	7	92146932	92146932	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	92146932	92146932	G	A	SNP	PEX1	ENST00000248633	human	ensembl	74_37	-1	known	silent	c.897	p.N299	0.000	NULL	pfam_ATPase_AAA_core,pfam_Peroxisome_synth_fac_1_a/b,pfam_PEX-1N,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,superfamily_Asp_de-COase-like_dom,smart_AAA+_ATPase	-	no_errors	PEX1	HGNC	ENSG00000127980				56	0	0	37	14	27.451
RBM48	0	genome.wustl.edu	37	7	92163897	92163897	+	Silent	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	92163897	92163897	T	C	SNP	RBM48	ENST00000265732	human	ensembl	74_37	+1	known	silent	c.630	p.C210	0.000	NULL	NULL	-	no_errors	RBM48	HGNC	ENSG00000127993				66	0	0	72	8	10
HEPACAM2	0	genome.wustl.edu	37	7	92848540	92848540	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	92848540	92848540	G	A	SNP	HEPACAM2	ENST00000394468	human	ensembl	74_37	-1	known	missense	c.304	p.P102S	1.000	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	HEPACAM2	HGNC	ENSG00000188175				70	0	0	63	15	19.2308
CCDC132	0	genome.wustl.edu	37	7	92882054	92882054	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	92882054	92882054	T	C	SNP	CCDC132	ENST00000305866	human	ensembl	74_37	+1	known	missense	c.191	p.V64A	0.187	pfam_Vacuolar_sorting-assoc_54	pfam_Vacuolar_sorting-assoc_54,pfam_DUF2451_C	-	no_errors	CCDC132	HGNC	ENSG00000004766				69	0	0	56	11	16.4179
ADAP1	0	genome.wustl.edu	37	7	939112	939112	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	939112	939112	G	A	SNP	ADAP1	ENST00000539900	human	ensembl	74_37	-1	known	missense	c.844	p.R282W	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_ArfGAP,pfam_Pleckstrin_homology,smart_ArfGAP,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ADAP1	HGNC	ENSG00000105963				30	0	0	14	5	26.3158
CASD1	0	genome.wustl.edu	37	7	94184921	94184921	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	94184921	94184921	G	A	SNP	CASD1	ENST00000297273	human	ensembl	74_37	+1	known	missense	c.2245	p.A749T	1.000	NULL	pfam_Cas1_AcylTrans_dom,superfamily_Cyclin-like	-	no_errors	CASD1	HGNC	ENSG00000127995				84	0	0	76	9	10.5882
SGCE	0	genome.wustl.edu	37	7	94252690	94252690	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	94252690	94252690	C	T	SNP	SGCE	ENST00000445866	human	ensembl	74_37	-1	known	missense	c.410	p.R137H	1.000	pfam_Sarcoglycan_2,superfamily_Cadherin-like,smart_Cadg	pfam_Sarcoglycan_2,superfamily_Cadherin-like,smart_Cadg	-	no_errors	SGCE	HGNC	ENSG00000127990				31	0	0	29	6	17.1429
LMTK2	0	genome.wustl.edu	37	7	97823050	97823050	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	97823050	97823050	G	A	SNP	LMTK2	ENST00000297293	human	ensembl	74_37	+1	known	silent	c.3273	p.T1091	0.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LMTK2	HGNC	ENSG00000164715				37	0	0	37	9	19.5652
TECPR1	0	genome.wustl.edu	37	7	97872868	97872868	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	97872868	97872868	G	A	SNP	TECPR1	ENST00000379795	human	ensembl	74_37	-1	known	missense	c.568	p.P190S	1.000	NULL	pfam_Beta-propeller_rpt_TECPR,superfamily_RCC1/BLIP-II,smart_Beta-propeller_rpt_TECPR,smart_Peroxin/Ferlin	-	no_errors	TECPR1	HGNC	ENSG00000205356				31	0	0	31	10	24.3902
ZCWPW1	0	genome.wustl.edu	37	7	99998688	99998688	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	99998688	99998688	C	T	SNP	ZCWPW1	ENST00000398027	human	ensembl	74_37	-1	known	silent	c.1896	p.Q632	0.000	NULL	pfam_Znf_CW,pfam_PWWP_dom,smart_PWWP_dom,pfscan_PWWP_dom,pfscan_Znf_CW	-	no_errors	ZCWPW1	HGNC	ENSG00000078487				53	0	0	37	6	13.9535
VPS13B	0	genome.wustl.edu	37	8	100568810	100568810	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	100568810	100568810	C	T	SNP	VPS13B	ENST00000358544	human	ensembl	74_37	+1	known	silent	c.4953	p.V1651	0.102	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549				71	0	0	63	10	13.6986
RNF19A	0	genome.wustl.edu	37	8	101300355	101300355	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	101300355	101300355	C	T	SNP	RNF19A	ENST00000341084	human	ensembl	74_37	-1	known	silent	c.48	p.L16	1.000	NULL	pfam_Znf_C6HC,smart_Znf_RING,smart_Znf_C6HC,pfscan_Znf_RING	-	no_errors	RNF19A	HGNC	ENSG00000034677				42	0	0	49	22	30.9859
SOX7	0	genome.wustl.edu	37	8	10692279	10692279	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	10692279	10692279	C	T	SNP	SOX7	ENST00000553390	human	ensembl	74_37	-1	known	missense	c.26	p.R9Q	1.000	NULL	pfam_Sox_C_TAD,pfam_G_patch_dom,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_HMG_box_dom	-	no_errors	SOX7	HGNC	ENSG00000171056				51	0	0	44	4	8.33333
PKHD1L1	0	genome.wustl.edu	37	8	110510979	110510979	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	110510979	110510979	A	G	SNP	PKHD1L1	ENST00000378402	human	ensembl	74_37	+1	known	missense	c.10807	p.S3603G	0.996	NULL	pfam_IPT,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038				52	0	0	46	4	8
CSMD3	0	genome.wustl.edu	37	8	113841970	113841970	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	113841970	113841970	T	C	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	missense	c.1804	p.T602A	0.994	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				74	0	0	73	8	9.87654
TRPS1	0	genome.wustl.edu	37	8	116427198	116427198	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	116427198	116427198	G	A	SNP	TRPS1	ENST00000395715	human	ensembl	74_37	-1	known	nonsense	c.2938	p.Q980*	1.000	NULL	pfam_Znf_GATA,smart_Znf_C2H2-like,smart_Znf_GATA,pfscan_Znf_C2H2,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	TRPS1	HGNC	ENSG00000104447				134	0	0	126	23	15.4362
TRPS1	0	genome.wustl.edu	37	8	116599384	116599384	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	116599384	116599384	G	A	SNP	TRPS1	ENST00000395715	human	ensembl	74_37	-1	known	silent	c.2544	p.A848	1.000	NULL	pfam_Znf_GATA,smart_Znf_C2H2-like,smart_Znf_GATA,pfscan_Znf_C2H2,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	TRPS1	HGNC	ENSG00000104447				79	0	0	87	18	17.1429
EIF3H	0	genome.wustl.edu	37	8	117658816	117658816	+	Silent	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	117658816	117658816	A	G	SNP	EIF3H	ENST00000521861	human	ensembl	74_37	-1	known	silent	c.855	p.N285	0.189	NULL	pfam_JAB_MPN_dom,smart_JAB_MPN_dom	-	no_errors	EIF3H	HGNC	ENSG00000147677				192	0	0	126	43	25.4438
SLC30A8	0	genome.wustl.edu	37	8	118170036	118170036	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	118170036	118170036	G	A	SNP	SLC30A8	ENST00000456015	human	ensembl	74_37	+1	known	silent	c.525	p.A175	0.000	pfam_Cation_efflux,tigrfam_Cation_efflux	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A8	HGNC	ENSG00000164756				100	0	0	92	19	17.1171
SLC30A8	0	genome.wustl.edu	37	8	118184853	118184853	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	118184853	118184853	C	T	SNP	SLC30A8	ENST00000456015	human	ensembl	74_37	+1	known	missense	c.1043	p.T348I	1.000	pfam_Cation_efflux,tigrfam_Cation_efflux	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A8	HGNC	ENSG00000164756				145	0	0	107	48	30.9677
EXT1	0	genome.wustl.edu	37	8	118817060	118817060	+	Silent	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	118817060	118817060	A	G	SNP	EXT1	ENST00000378204	human	ensembl	74_37	-1	known	silent	c.1956	p.C652	1.000	pfam_HexNAc_Trfase_a	pfam_HexNAc_Trfase_a,pfam_Exostosin	-	no_errors	EXT1	HGNC	ENSG00000182197				100	0	0	78	34	30.3571
DEPTOR	0	genome.wustl.edu	37	8	120886177	120886177	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	120886177	120886177	G	A	SNP	DEPTOR	ENST00000286234	human	ensembl	74_37	+1	known	missense	c.91	p.A31T	1.000	NULL	pfam_DEP_dom,superfamily_PDZ,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ	-	no_errors	DEPTOR	HGNC	ENSG00000155792				46	0	0	30	4	11.7647
COL14A1	0	genome.wustl.edu	37	8	121256225	121256225	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	121256225	121256225	C	T	SNP	COL14A1	ENST00000297848	human	ensembl	74_37	+1	known	silent	c.2457	p.S819	0.958	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_VWF_A,pfam_Fibronectin_type3,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL14A1	HGNC	ENSG00000187955				121	0	0	129	26	16.7742
HAS2	0	genome.wustl.edu	37	8	122627011	122627011	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	122627011	122627011	G	A	SNP	HAS2	ENST00000303924	human	ensembl	74_37	-1	known	nonsense	c.997	p.R333*	1.000	pfam_Chitin_synth_fng	pfam_Chitin_synth_fng	-	no_errors	HAS2	HGNC	ENSG00000170961				116	0	0	131	17	11.4865
ATAD2	0	genome.wustl.edu	37	8	124382182	124382182	+	Silent	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	124382182	124382182	A	G	SNP	ATAD2	ENST00000287394	human	ensembl	74_37	-1	known	silent	c.810	p.D270	0.909	NULL	pfam_ATPase_AAA_core,pfam_Bromodomain,superfamily_P-loop_NTPase,superfamily_Bromodomain,smart_AAA+_ATPase,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	ATAD2	HGNC	ENSG00000156802				27	0	0	24	6	20
KLHL38	0	genome.wustl.edu	37	8	124663889	124663889	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	124663889	124663889	G	A	SNP	KLHL38	ENST00000325995	human	ensembl	74_37	-1	known	silent	c.1278	p.V426	0.044	smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL38	HGNC	ENSG00000175946				76	0	0	79	11	12.2222
FAM91A1	0	genome.wustl.edu	37	8	124824810	124824810	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	124824810	124824810	C	A	SNP	FAM91A1	ENST00000334705	human	ensembl	74_37	+1	known	missense	c.2383	p.L795I	0.998	NULL	NULL	-	no_errors	FAM91A1	HGNC	ENSG00000176853				84	0	0	102	29	22.1374
DLC1	0	genome.wustl.edu	37	8	12957788	12957788	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	12957788	12957788	C	T	SNP	DLC1	ENST00000276297	human	ensembl	74_37	-1	known	silent	c.2058	p.A686	0.013	NULL	pfam_START_lipid-bd_dom,pfam_RhoGAP_dom,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom,pfscan_RhoGAP_dom	-	no_errors	DLC1	HGNC	ENSG00000164741				101	0	0	97	36	27.0677
TG	0	genome.wustl.edu	37	8	133899619	133899619	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	133899619	133899619	C	T	SNP	TG	ENST00000220616	human	ensembl	74_37	+1	known	missense	c.2002	p.R668C	0.000	pfam_Thyroglobulin_1,superfamily_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	pfam_Thyroglobulin_1,pfam_CarbesteraseB,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	-	no_errors	TG	HGNC	ENSG00000042832				53	0	0	48	8	14.2857
ZFAT	0	genome.wustl.edu	37	8	135649947	135649947	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	135649947	135649947	C	T	SNP	ZFAT	ENST00000377838	human	ensembl	74_37	-1	known	missense	c.205	p.V69I	0.807	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFAT	HGNC	ENSG00000066827				96	0	0	61	24	28.2353
KHDRBS3	0	genome.wustl.edu	37	8	136594174	136594174	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	136594174	136594174	C	T	SNP	KHDRBS3	ENST00000355849	human	ensembl	74_37	+1	known	missense	c.665	p.T222M	0.977	NULL	smart_KH_dom	-	no_errors	KHDRBS3	HGNC	ENSG00000131773				54	0	0	59	14	19.1781
AGO2	0	genome.wustl.edu	37	8	141567204	141567204	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	141567204	141567204	G	C	SNP	AGO2	ENST00000220592	human	ensembl	74_37	-1	known	missense	c.1010	p.T337S	1.000	pfam_PAZ_dom,superfamily_PAZ_dom,smart_PAZ_dom,pfscan_PAZ_dom	pfam_Piwi,pfam_PAZ_dom,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	AGO2	HGNC	ENSG00000123908				104	0	0	86	32	27.1186
DENND3	0	genome.wustl.edu	37	8	142186732	142186732	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	142186732	142186732	C	T	SNP	DENND3	ENST00000262585	human	ensembl	74_37	+1	known	missense	c.2338	p.P780S	1.000	NULL	pfam_DENN_dom,pfam_dDENN_dom,pfam_WD40_repeat,pfam_uDENN_dom,superfamily_WD40_repeat_dom,smart_DENN_dom,smart_dDENN_dom,smart_WD40_repeat,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_WD40_repeat_dom	-	no_errors	DENND3	HGNC	ENSG00000105339				73	0	0	55	12	17.9104
LRRC14	0	genome.wustl.edu	37	8	145745377	145745377	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	145745377	145745377	C	A	SNP	LRRC14	ENST00000292524	human	ensembl	74_37	+1	known	missense	c.268	p.L90M	1.000	NULL	NULL	-	no_errors	LRRC14	HGNC	ENSG00000160959				38	0	0	35	6	14.6341
ARHGAP39	0	genome.wustl.edu	37	8	145771022	145771022	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	145771022	145771022	C	T	SNP	ARHGAP39	ENST00000377307	human	ensembl	74_37	-1	known	missense	c.2132	p.R711Q	1.000	NULL	pfam_RhoGAP_dom,pfam_MyTH4_dom,superfamily_Rho_GTPase_activation_prot,superfamily_WW_dom,smart_WW_dom,smart_MyTH4_dom,smart_RhoGAP_dom,pfscan_MyTH4_dom,pfscan_WW_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP39	HGNC	ENSG00000147799				33	0	0	31	5	13.8889
XPO7	0	genome.wustl.edu	37	8	21848376	21848376	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	21848376	21848376	C	T	SNP	XPO7	ENST00000434536	human	ensembl	74_37	+1	known	missense	c.2014	p.R672W	1.000	superfamily_ARM-type_fold	pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	XPO7	HGNC	ENSG00000130227				235	0	0	237	47	16.5493
XPO7	0	genome.wustl.edu	37	8	21857142	21857142	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	21857142	21857142	C	T	SNP	XPO7	ENST00000434536	human	ensembl	74_37	+1	known	silent	c.2766	p.I922	1.000	superfamily_ARM-type_fold	pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	XPO7	HGNC	ENSG00000130227				102	0	0	73	36	33.0275
DMTN	0	genome.wustl.edu	37	8	21929897	21929897	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	21929897	21929897	A	G	SNP	DMTN	ENST00000265800	human	ensembl	74_37	+1	known	missense	c.665	p.E222G	1.000	NULL	pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin_headpiece,pfscan_Villin_headpiece	-	no_errors	DMTN	HGNC	ENSG00000158856				26	0	0	25	3	10.7143
REEP4	0	genome.wustl.edu	37	8	21996976	21996976	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	21996976	21996976	G	A	SNP	REEP4	ENST00000306306	human	ensembl	74_37	-1	known	missense	c.370	p.R124W	1.000	NULL	pfam_TB2_DP1_HVA22	-	no_errors	REEP4	HGNC	ENSG00000168476				28	0	0	21	4	16
PIWIL2	0	genome.wustl.edu	37	8	22147407	22147407	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	22147407	22147407	A	G	SNP	PIWIL2	ENST00000356766	human	ensembl	74_37	+1	known	missense	c.1034	p.D345G	1.000	superfamily_PAZ_dom	pfam_Piwi,pfam_PAZ_dom,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	PIWIL2	HGNC	ENSG00000197181				49	0	0	51	15	22.7273
PIWIL2	0	genome.wustl.edu	37	8	22210726	22210726	+	Splice_Site	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	22210726	22210726	G	A	SNP	PIWIL2	ENST00000356766	human	ensembl	74_37	+1	known	splice_site	c.2657+1	e20+1	1.000	-	-	-	no_errors	PIWIL2	HGNC	ENSG00000197181				96	0	0	77	33	30
CCAR2	0	genome.wustl.edu	37	8	22463333	22463333	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	22463333	22463333	G	A	SNP	CCAR2	ENST00000308511	human	ensembl	74_37	+1	known	missense	c.47	p.R16H	1.000	NULL	superfamily_NA-bd_OB-fold	-	no_errors	CCAR2	HGNC	ENSG00000158941				62	0	0	73	12	14.1176
RHOBTB2	0	genome.wustl.edu	37	8	22864897	22864897	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	22864897	22864897	C	T	SNP	RHOBTB2	ENST00000251822	human	ensembl	74_37	+1	known	missense	c.1139	p.P380L	0.893	superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,pfam_Small_GTPase,pfam_MIRO-like,superfamily_P-loop_NTPase,superfamily_BTB/POZ_fold,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_BTB/POZ-like,pfscan_BTB/POZ-like,prints_Small_GTPase	-	no_errors	RHOBTB2	HGNC	ENSG00000008853				62	0	0	60	30	33.3333
NEFL	0	genome.wustl.edu	37	8	24813156	24813156	+	RNA	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	24813156	24813156	C	T	SNP	NEFL	ENST00000221169	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	NEFL	HGNC	ENSG00000104725				30	0	0	21	11	34.375
DPYSL2	0	genome.wustl.edu	37	8	26501484	26501484	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	26501484	26501484	G	A	SNP	DPYSL2	ENST00000311151	human	ensembl	74_37	+1	known	silent	c.987	p.T329	0.973	pfam_Amidohydro_1,tigrfam_Hydantoinase/dihydroPyrase	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	DPYSL2	HGNC	ENSG00000092964				30	0	0	21	8	27.5862
DPYSL2	0	genome.wustl.edu	37	8	26501587	26501587	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	26501587	26501587	G	A	SNP	DPYSL2	ENST00000311151	human	ensembl	74_37	+1	known	missense	c.1090	p.V364I	0.570	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	DPYSL2	HGNC	ENSG00000092964				44	0	0	42	8	16
PTK2B	0	genome.wustl.edu	37	8	27303434	27303434	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	27303434	27303434	C	T	SNP	PTK2B	ENST00000346049	human	ensembl	74_37	+1	known	missense	c.2338	p.R780W	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Focal_adhesion_kin_target_dom,pfam_Prot_kinase_dom,pfam_FERM_central,superfamily_Kinase-like_dom,superfamily_Focal_adhesion_kin_target_dom,superfamily_FERM_central,smart_Band_41_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PTK2B	HGNC	ENSG00000120899				64	0	0	68	13	16.0494
KIF13B	0	genome.wustl.edu	37	8	29005050	29005050	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	29005050	29005050	C	T	SNP	KIF13B	ENST00000524189	human	ensembl	74_37	-1	known	missense	c.1883	p.R628H	1.000	NULL	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_CAP-Gly_domain,pfam_KIF1B,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_CAP-Gly_domain,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_CAP-Gly_domain,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF13B	HGNC	ENSG00000197892				40	0	0	40	4	9.09091
CSMD1	0	genome.wustl.edu	37	8	3008925	3008925	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	3008925	3008925	C	T	SNP	CSMD1	ENST00000520002	human	ensembl	74_37	-1	known	missense	c.6028	p.G2010S	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117				33	0	0	43	8	15.6863
ADAM32	0	genome.wustl.edu	37	8	39068795	39068795	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	39068795	39068795	C	T	SNP	ADAM32	ENST00000379907	human	ensembl	74_37	+1	known	silent	c.1185	p.G395	0.748	pfscan_Blood-coag_inhib_Disintegrin	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM32	HGNC	ENSG00000197140				21	0	0	15	8	34.7826
ADAM18	0	genome.wustl.edu	37	8	39495209	39495209	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	39495209	39495209	G	T	SNP	ADAM18	ENST00000265707	human	ensembl	74_37	+1	known	missense	c.814	p.A272S	0.007	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B	-	no_errors	ADAM18	HGNC	ENSG00000168619				79	0	0	58	19	24.6753
ANK1	0	genome.wustl.edu	37	8	41550195	41550195	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	41550195	41550195	C	T	SNP	ANK1	ENST00000396942	human	ensembl	74_37	-1	known	missense	c.3829	p.V1277M	0.994	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK1	HGNC	ENSG00000029534				245	0	0	203	40	16.4609
AP3M2	0	genome.wustl.edu	37	8	42023047	42023047	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	42023047	42023047	C	T	SNP	AP3M2	ENST00000174653	human	ensembl	74_37	+1	known	missense	c.772	p.R258C	1.000	pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C	pfam_Clathrin_mu_C,pfam_AP_mu_sigma_su,superfamily_Clathrin_mu_C,superfamily_Longin-like_dom,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C,prints_Clathrin_mu	-	no_errors	AP3M2	HGNC	ENSG00000070718				130	0	0	86	40	31.746
PRKDC	0	genome.wustl.edu	37	8	48690324	48690324	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	48690324	48690324	G	A	SNP	PRKDC	ENST00000314191	human	ensembl	74_37	-1	known	missense	c.11962	p.R3988W	0.987	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729				102	0	0	80	26	24.5283
EFCAB1	0	genome.wustl.edu	37	8	49647682	49647682	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	49647682	49647682	G	A	SNP	EFCAB1	ENST00000262103	human	ensembl	74_37	-1	known	missense	c.29	p.T10M	0.994	NULL	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	-	no_errors	EFCAB1	HGNC	ENSG00000034239				110	0	0	93	10	9.70874
PXDNL	0	genome.wustl.edu	37	8	52321554	52321554	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	52321554	52321554	G	A	SNP	PXDNL	ENST00000356297	human	ensembl	74_37	-1	known	missense	c.2630	p.T877M	0.964	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDNL	HGNC	ENSG00000147485				44	0	0	36	7	16.2791
PXDNL	0	genome.wustl.edu	37	8	52321594	52321594	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	52321594	52321594	G	A	SNP	PXDNL	ENST00000356297	human	ensembl	74_37	-1	known	missense	c.2590	p.R864C	0.794	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDNL	HGNC	ENSG00000147485				36	0	0	25	14	35.8974
NPBWR1	0	genome.wustl.edu	37	8	53853442	53853442	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	53853442	53853442	C	T	SNP	NPBWR1	ENST00000331251	human	ensembl	74_37	+1	known	silent	c.975	p.R325	0.003	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Neuropept_B/W_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt,prints_Opioid_rcpt	-	no_errors	NPBWR1	HGNC	ENSG00000183729				27	0	0	18	10	35.7143
RP1	0	genome.wustl.edu	37	8	55533986	55533986	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	55533986	55533986	C	T	SNP	RP1	ENST00000220676	human	ensembl	74_37	+1	known	missense	c.460	p.R154W	0.938	smart_Doublecortin_dom,pfscan_Doublecortin_dom	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237				65	0	0	52	13	20
CHD7	0	genome.wustl.edu	37	8	61765392	61765392	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	61765392	61765392	G	A	SNP	CHD7	ENST00000423902	human	ensembl	74_37	+1	known	silent	c.6108	p.P2036	0.001	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD7	HGNC	ENSG00000171316				136	0	0	141	23	14.0244
MCPH1	0	genome.wustl.edu	37	8	6302423	6302423	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	6302423	6302423	C	T	SNP	MCPH1	ENST00000344683	human	ensembl	74_37	+1	known	silent	c.1180	p.L394	0.001	pfam_Microcephalin	pfam_Microcephalin,pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom,prints_BRCA1	-	no_errors	MCPH1	HGNC	ENSG00000147316				67	0	0	38	19	33.3333
ADHFE1	0	genome.wustl.edu	37	8	67369347	67369347	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	67369347	67369347	A	G	SNP	ADHFE1	ENST00000396623	human	ensembl	74_37	+1	known	missense	c.1108	p.T370A	0.985	pfam_ADH_Fe	pfam_ADH_Fe	-	no_errors	ADHFE1	HGNC	ENSG00000147576				194	0	0	179	18	9.13706
MCMDC2	0	genome.wustl.edu	37	8	67789611	67789611	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	67789611	67789611	T	G	SNP	MCMDC2	ENST00000422365	human	ensembl	74_37	+1	known	missense	c.313	p.L105V	1.000	superfamily_NA-bd_OB-fold	pfam_MCM_DNA-dep_ATPase,superfamily_NA-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase	-	no_errors	MCMDC2	HGNC	ENSG00000178460				36	0	0	47	4	7.84314
NCOA2	0	genome.wustl.edu	37	8	71068296	71068296	+	Silent	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	71068296	71068296	T	C	SNP	NCOA2	ENST00000452400	human	ensembl	74_37	-1	known	silent	c.2304	p.R768	0.841	pirsf_Nuclear_rcpt_coactivator	pfam_DUF1518,pfam_SRC-1,pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_PAS_fold,superfamily_PAS,superfamily_Nuc_rcpt_coact,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NCOA2	HGNC	ENSG00000140396				47	0	0	66	10	13.1579
NCOA2	0	genome.wustl.edu	37	8	71068364	71068364	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	71068364	71068364	G	A	SNP	NCOA2	ENST00000452400	human	ensembl	74_37	-1	known	missense	c.2236	p.R746C	1.000	pirsf_Nuclear_rcpt_coactivator	pfam_DUF1518,pfam_SRC-1,pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_PAS_fold,superfamily_PAS,superfamily_Nuc_rcpt_coact,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NCOA2	HGNC	ENSG00000140396				106	0	0	98	33	25.1908
TRPA1	0	genome.wustl.edu	37	8	72946564	72946564	+	Silent	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	72946564	72946564	T	C	SNP	TRPA1	ENST00000262209	human	ensembl	74_37	-1	known	silent	c.2604	p.K868	1.000	pfam_Ion_trans_dom	pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	TRPA1	HGNC	ENSG00000104321				72	0	0	93	6	6.06061
JPH1	0	genome.wustl.edu	37	8	75171672	75171672	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	75171672	75171672	G	A	SNP	JPH1	ENST00000342232	human	ensembl	74_37	-1	known	silent	c.1206	p.C402	0.732	pirsf_Junctophilin	pfam_MORN,smart_MORN,pirsf_Junctophilin	-	no_errors	JPH1	HGNC	ENSG00000104369				59	0	0	68	8	10.5263
ZFHX4	0	genome.wustl.edu	37	8	77768354	77768354	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	77768354	77768354	G	A	SNP	ZFHX4	ENST00000521891	human	ensembl	74_37	+1	known	missense	c.9197	p.R3066H	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656				158	1	0.628931	108	51	32.0755
PSKH2	0	genome.wustl.edu	37	8	87060712	87060712	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	87060712	87060712	C	T	SNP	PSKH2	ENST00000276616	human	ensembl	74_37	-1	known	silent	c.1137	p.S379	0.002	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	PSKH2	HGNC	ENSG00000147613				107	0	0	103	15	12.7119
RUNX1T1	0	genome.wustl.edu	37	8	93026963	93026963	+	Silent	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	93026963	93026963	A	G	SNP	RUNX1T1	ENST00000436581	human	ensembl	74_37	-1	known	silent	c.345	p.S115	0.632	NULL	pfam_NHR2,pfam_TAFH_NHR1,pfam_Znf_MYND,smart_TAFH_NHR1,pfscan_TAFH_NHR1,pfscan_Znf_MYND,prints_ETO,prints_MTG8	-	no_errors	RUNX1T1	HGNC	ENSG00000079102				50	0	0	49	19	27.9412
GEM	0	genome.wustl.edu	37	8	95272569	95272569	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	95272569	95272569	G	A	SNP	GEM	ENST00000297596	human	ensembl	74_37	-1	known	missense	c.163	p.R55C	1.000	pirsf_Small_GTPase_GEM/REM/Rad	pfam_Small_GTPase,pfam_MIRO-like,pfam_Fe2_transport_prot_B_N,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,pirsf_Small_GTPase_GEM/REM/Rad,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	GEM	HGNC	ENSG00000164949				36	0	0	22	23	51.1111
CCNE2	0	genome.wustl.edu	37	8	95900288	95900288	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	95900288	95900288	T	C	SNP	CCNE2	ENST00000308108	human	ensembl	74_37	-1	known	missense	c.467	p.Y156C	1.000	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	pfam_Cyclin_N,pfam_Cyclin_C-dom,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	-	no_errors	CCNE2	HGNC	ENSG00000175305				43	0	0	79	8	9.1954
NDUFAF6	0	genome.wustl.edu	37	8	96059246	96059246	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	96059246	96059246	A	G	SNP	NDUFAF6	ENST00000396124	human	ensembl	74_37	+1	known	missense	c.605	p.H202R	1.000	pfam_Squ/phyt_synthse,superfamily_Terpenoid_synth	pfam_Squ/phyt_synthse,superfamily_Terpenoid_synth	-	no_errors	NDUFAF6	HGNC	ENSG00000156170				58	0	0	71	10	12.3457
TRIM14	0	genome.wustl.edu	37	9	100854204	100854204	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	100854204	100854204	C	T	SNP	TRIM14	ENST00000341469	human	ensembl	74_37	-1	known	silent	c.780	p.S260	0.001	superfamily_ConA-like_lec_gl_sf,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl_sf,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,prints_Butyrophylin	-	no_errors	TRIM14	HGNC	ENSG00000106785				80	0	0	66	9	12
CORO2A	0	genome.wustl.edu	37	9	100887136	100887136	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	100887136	100887136	G	A	SNP	CORO2A	ENST00000343933	human	ensembl	74_37	-1	known	silent	c.1498	p.L500	0.993	NULL	pfam_DUF1900,pfam_DUF1899,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO2A	HGNC	ENSG00000106789				16	0	0	7	4	36.3636
INVS	0	genome.wustl.edu	37	9	103035322	103035322	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	103035322	103035322	T	C	SNP	INVS	ENST00000262457	human	ensembl	74_37	+1	known	missense	c.1748	p.M583T	1.000	superfamily_P-loop_NTPase,pfscan_IQ_motif_EF-hand-BS	pfam_Ankyrin_rpt,pfam_IQ_motif_EF-hand-BS,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,smart_IQ_motif_EF-hand-BS,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Ankyrin_rpt	-	no_errors	INVS	HGNC	ENSG00000119509				237	0	0	156	19	10.8571
RNF20	0	genome.wustl.edu	37	9	104312994	104312994	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	104312994	104312994	C	T	SNP	RNF20	ENST00000389120	human	ensembl	74_37	+1	known	missense	c.1199	p.A400V	1.000	superfamily_STAT_TF_coiled-coil	superfamily_STAT_TF_coiled-coil,superfamily_Prefoldin,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF20	HGNC	ENSG00000155827				173	0	0	159	34	17.6166
CYLC2	0	genome.wustl.edu	37	9	105767799	105767799	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	105767799	105767799	G	A	SNP	CYLC2	ENST00000374798	human	ensembl	74_37	+1	known	missense	c.886	p.A296T	0.004	NULL	NULL	-	no_errors	CYLC2	HGNC	ENSG00000155833				51	0	0	54	8	12.9032
OR13C3	0	genome.wustl.edu	37	9	107298285	107298285	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	107298285	107298285	C	T	SNP	OR13C3	ENST00000374781	human	ensembl	74_37	-1	known	silent	c.810	p.T270	0.997	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR13C3	HGNC	ENSG00000204246				124	0	0	111	21	15.9091
ABCA1	0	genome.wustl.edu	37	9	107645350	107645350	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	107645350	107645350	T	A	SNP	ABCA1	ENST00000374736	human	ensembl	74_37	-1	known	missense	c.391	p.T131S	0.013	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA1	HGNC	ENSG00000165029				104	0	0	99	15	13.1579
CTNNAL1	0	genome.wustl.edu	37	9	111741587	111741587	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	111741587	111741587	G	A	SNP	CTNNAL1	ENST00000325551	human	ensembl	74_37	-1	known	nonsense	c.1075	p.Q359*	1.000	pfam_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin	-	no_errors	CTNNAL1	HGNC	ENSG00000119326				82	0	0	59	8	11.9403
WDR31	0	genome.wustl.edu	37	9	116079127	116079127	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	116079127	116079127	C	T	SNP	WDR31	ENST00000374193	human	ensembl	74_37	-1	known	missense	c.1006	p.A336T	0.005	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR31	HGNC	ENSG00000148225				58	0	0	51	9	15
RGS3	0	genome.wustl.edu	37	9	116241776	116241776	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	116241776	116241776	C	A	SNP	RGS3	ENST00000350696	human	ensembl	74_37	+1	known	missense	c.421	p.L141M	1.000	superfamily_C2_dom	pfam_RGS_dom,pfam_C2_dom,pfam_PDZ,superfamily_Regulat_G_prot_signal_superfam,superfamily_C2_dom,superfamily_PDZ,smart_C2_dom,smart_PDZ,smart_Regulat_G_prot_signal_superfam,pfscan_C2_dom,pfscan_PDZ,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS3	HGNC	ENSG00000138835				119	1	0.833333	104	14	11.8644
FOXD4	0	genome.wustl.edu	37	9	117619	117619	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	117619	117619	G	A	SNP	FOXD4	ENST00000382500	human	ensembl	74_37	-1	known	silent	c.501	p.R167	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXD4	HGNC	ENSG00000170122				371	1	0.268817	284	24	7.79221
TNC	0	genome.wustl.edu	37	9	117848173	117848173	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	117848173	117848173	C	T	SNP	TNC	ENST00000350763	human	ensembl	74_37	-1	known	missense	c.1837	p.E613K	0.962	pfam_EGF_extracell,smart_EG-like_dom	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNC	HGNC	ENSG00000041982				18	0	0	22	8	26.6667
PTGS1	0	genome.wustl.edu	37	9	125140783	125140783	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	125140783	125140783	G	A	SNP	PTGS1	ENST00000362012	human	ensembl	74_37	+1	known	missense	c.283	p.G95R	0.985	superfamily_Haem_peroxidase	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_EG-like_dom,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	PTGS1	HGNC	ENSG00000095303				75	0	0	56	12	17.6471
ZBTB26	0	genome.wustl.edu	37	9	125681367	125681367	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	125681367	125681367	G	A	SNP	ZBTB26	ENST00000373654	human	ensembl	74_37	-1	known	missense	c.847	p.R283C	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB26	HGNC	ENSG00000171448				120	0	0	109	21	16.1538
LHX2	0	genome.wustl.edu	37	9	126777589	126777589	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	126777589	126777589	C	T	SNP	LHX2	ENST00000373615	human	ensembl	74_37	+1	known	missense	c.512	p.A171V	1.000	pfscan_Znf_LIM	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LHX2	HGNC	ENSG00000106689				75	0	0	40	10	20
ARPC5L	0	genome.wustl.edu	37	9	127637424	127637424	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	127637424	127637424	C	T	SNP	ARPC5L	ENST00000259477	human	ensembl	74_37	+1	known	silent	c.393	p.H131	0.999	pfam_ARP2/3_p16_Arc,superfamily_ARP2/3_p16_Arc	pfam_ARP2/3_p16_Arc,superfamily_ARP2/3_p16_Arc	-	no_errors	ARPC5L	HGNC	ENSG00000136950				75	0	0	65	16	19.7531
MVB12B	0	genome.wustl.edu	37	9	129154437	129154437	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	129154437	129154437	C	T	SNP	MVB12B	ENST00000361171	human	ensembl	74_37	+1	known	missense	c.502	p.R168W	1.000	pfam_FAM125	pfam_FAM125	-	no_errors	MVB12B	HGNC	ENSG00000196814				104	0	0	82	26	24.0741
ZBTB34	0	genome.wustl.edu	37	9	129642791	129642791	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	129642791	129642791	G	A	SNP	ZBTB34	ENST00000319119	human	ensembl	74_37	+1	known	silent	c.1113	p.P371	0.434	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB34	HGNC	ENSG00000177125				50	0	0	30	15	33.3333
FAM129B	0	genome.wustl.edu	37	9	130271277	130271277	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	130271277	130271277	C	T	SNP	FAM129B	ENST00000373312	human	ensembl	74_37	-1	known	missense	c.1295	p.R432Q	1.000	NULL	pfscan_Pleckstrin_homology	-	no_errors	FAM129B	HGNC	ENSG00000136830				26	0	0	18	4	18.1818
PTGES2	0	genome.wustl.edu	37	9	130886796	130886796	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	130886796	130886796	C	T	SNP	PTGES2	ENST00000338961	human	ensembl	74_37	-1	known	missense	c.511	p.A171T	0.994	superfamily_Thioredoxin-like_fold	pfam_Glutaredoxin,pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold	-	no_errors	PTGES2	HGNC	ENSG00000148334				44	0	0	28	7	20
ODF2	0	genome.wustl.edu	37	9	131221920	131221920	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	131221920	131221920	C	A	SNP	ODF2	ENST00000434106	human	ensembl	74_37	+1	known	missense	c.107	p.P36H	1.000	NULL	NULL	-	no_errors	ODF2	HGNC	ENSG00000136811				51	0	0	40	7	14.8936
WDR34	0	genome.wustl.edu	37	9	131396155	131396155	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	131396155	131396155	C	T	SNP	WDR34	ENST00000372715	human	ensembl	74_37	-1	known	silent	c.1479	p.Q493	0.997	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR34	HGNC	ENSG00000119333				54	0	0	53	9	14.5161
DOLK	0	genome.wustl.edu	37	9	131708027	131708027	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	131708027	131708027	T	C	SNP	DOLK	ENST00000372586	human	ensembl	74_37	-1	known	missense	c.1556	p.Y519C	1.000	NULL	NULL	-	no_errors	DOLK	HGNC	ENSG00000175283				137	0	0	76	19	20
SH3GLB2	0	genome.wustl.edu	37	9	131771036	131771036	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	131771036	131771036	G	A	SNP	SH3GLB2	ENST00000372554	human	ensembl	74_37	-1	known	missense	c.1142	p.P381L	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_BAR_dom,pfam_BAR_dom-cont,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain	-	no_errors	SH3GLB2	HGNC	ENSG00000148341				40	0	0	35	3	7.89474
CRAT	0	genome.wustl.edu	37	9	131870275	131870275	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	131870275	131870275	G	A	SNP	CRAT	ENST00000318080	human	ensembl	74_37	-1	known	missense	c.109	p.R37W	0.023	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CRAT	HGNC	ENSG00000095321				51	0	0	43	7	14
USP20	0	genome.wustl.edu	37	9	132630629	132630629	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	132630629	132630629	G	A	SNP	USP20	ENST00000315480	human	ensembl	74_37	+1	known	missense	c.1036	p.E346K	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Pept_C19_DUSP,pfam_Znf_UBP,smart_Znf_UBP,smart_Pept_C19_DUSP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP20	HGNC	ENSG00000136878				68	0	0	42	6	12.5
FIBCD1	0	genome.wustl.edu	37	9	133805022	133805022	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	133805022	133805022	G	A	SNP	FIBCD1	ENST00000372338	human	ensembl	74_37	-1	known	missense	c.484	p.R162W	1.000	NULL	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	FIBCD1	HGNC	ENSG00000130720				14	0	0	10	4	28.5714
LAMC3	0	genome.wustl.edu	37	9	133951290	133951290	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	133951290	133951290	G	A	SNP	LAMC3	ENST00000361069	human	ensembl	74_37	+1	known	silent	c.3567	p.A1189	0.014	NULL	pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_B_type_IV,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMC3	HGNC	ENSG00000050555				11	0	0	10	4	28.5714
RAPGEF1	0	genome.wustl.edu	37	9	134459910	134459910	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	134459910	134459910	T	C	SNP	RAPGEF1	ENST00000372190	human	ensembl	74_37	-1	known	missense	c.2803	p.M935V	1.000	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF1	HGNC	ENSG00000107263				86	0	0	58	17	22.6667
SETX	0	genome.wustl.edu	37	9	135201786	135201786	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	135201786	135201786	C	T	SNP	SETX	ENST00000372169	human	ensembl	74_37	-1	known	silent	c.5199	p.V1733	1.000	NULL	superfamily_P-loop_NTPase	-	no_errors	SETX	HGNC	ENSG00000107290				56	0	0	49	9	15.5172
TTF1	0	genome.wustl.edu	37	9	135251410	135251410	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	135251410	135251410	G	A	SNP	TTF1	ENST00000334270	human	ensembl	74_37	-1	known	silent	c.2610	p.D870	0.002	NULL	superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	TTF1	HGNC	ENSG00000125482				67	0	0	57	15	20.8333
DDX31	0	genome.wustl.edu	37	9	135487481	135487481	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	135487481	135487481	C	T	SNP	DDX31	ENST00000372159	human	ensembl	74_37	-1	known	missense	c.2302	p.V768M	0.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX31	HGNC	ENSG00000125485				164	0	0	112	29	20.5674
C9orf96	0	genome.wustl.edu	37	9	136268949	136268949	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	136268949	136268949	C	T	SNP	C9orf96	ENST00000371957	human	ensembl	74_37	+1	known	silent	c.1600	p.L534	0.023	superfamily_ARM-type_fold	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	C9orf96	HGNC	ENSG00000198870				19	0	0	20	5	20
ADAMTS13	0	genome.wustl.edu	37	9	136320407	136320407	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	136320407	136320407	T	G	SNP	ADAMTS13	ENST00000371929	human	ensembl	74_37	+1	known	missense	c.3250	p.C1084G	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,superfamily_CUB_dom,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS13	HGNC	ENSG00000160323				103	0	0	87	14	13.8614
ADAMTSL2	0	genome.wustl.edu	37	9	136403509	136403509	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	136403509	136403509	C	T	SNP	ADAMTSL2	ENST00000393061	human	ensembl	74_37	+1	known	missense	c.599	p.T200M	0.831	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTSL2	HGNC	ENSG00000197859				46	0	0	42	9	17.6471
VAV2	0	genome.wustl.edu	37	9	136637093	136637093	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	136637093	136637093	G	A	SNP	VAV2	ENST00000371850	human	ensembl	74_37	-1	known	silent	c.2211	p.F737	0.992	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	pfam_DH-domain,pfam_SH3_2,pfam_CAMSAP_CH,pfam_SH3_domain,pfam_SH2,pfam_CH-domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,smart_SH2,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain,prints_SH2,prints_SH3_domain	-	no_errors	VAV2	HGNC	ENSG00000160293				102	0	0	70	12	14.6341
CAMSAP1	0	genome.wustl.edu	37	9	138713422	138713422	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	138713422	138713422	C	T	SNP	CAMSAP1	ENST00000409386	human	ensembl	74_37	-1	known	missense	c.3118	p.E1040K	1.000	NULL	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrel-like,superfamily_CH-domain	-	no_errors	CAMSAP1	HGNC	ENSG00000130559				68	0	0	45	6	11.7647
UBAC1	0	genome.wustl.edu	37	9	138839710	138839710	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	138839710	138839710	C	T	SNP	UBAC1	ENST00000371756	human	ensembl	74_37	-1	known	silent	c.375	p.L125	0.006	NULL	pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,smart_STI1_HS-bd,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBAC1	HGNC	ENSG00000130560				29	0	0	14	2	12.5
SNAPC4	0	genome.wustl.edu	37	9	139276396	139276396	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	139276396	139276396	G	A	SNP	SNAPC4	ENST00000298532	human	ensembl	74_37	-1	known	missense	c.2197	p.H733Y	0.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	SNAPC4	HGNC	ENSG00000165684				21	0	0	13	3	18.75
NOTCH1	0	genome.wustl.edu	37	9	139391870	139391870	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	139391870	139391870	G	A	SNP	NOTCH1	ENST00000277541	human	ensembl	74_37	-1	known	silent	c.6321	p.H2107	0.517	superfamily_Ankyrin_rpt-contain_dom,pirsf_Notch,pfscan_Ankyrin_rpt-contain_dom	pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_EGF_extracell,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_1,prints_Notch_dom	-	no_errors	NOTCH1	HGNC	ENSG00000148400				50	0	0	31	6	16.2162
TRAF2	0	genome.wustl.edu	37	9	139820309	139820309	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	139820309	139820309	G	A	SNP	TRAF2	ENST00000359662	human	ensembl	74_37	+1	known	missense	c.1618	p.D540N	0.998	pfam_MATH,superfamily_TRAF-like,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH	pfam_MATH,pfam_Znf_C3HC4_RING-type,superfamily_TRAF-like,smart_Znf_RING,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	TRAF2	HGNC	ENSG00000127191				65	0	0	43	10	18.8679
CNTLN	0	genome.wustl.edu	37	9	17394855	17394855	+	Silent	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	17394855	17394855	A	G	SNP	CNTLN	ENST00000380647	human	ensembl	74_37	+1	known	silent	c.2403	p.S801	0.022	NULL	superfamily_Prefoldin	-	no_errors	CNTLN	HGNC	ENSG00000044459				139	0	0	83	19	18.6275
ACO1	0	genome.wustl.edu	37	9	32431791	32431791	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	32431791	32431791	C	T	SNP	ACO1	ENST00000309951	human	ensembl	74_37	+1	known	missense	c.1801	p.R601C	0.949	superfamily_Acoase/IPM_deHydtase_lsu_aba,tigrfam_Aconitase/Fe_reg_prot_2	pfam_Acoase/IPM_deHydtase_lsu_aba,pfam_AconitaseA/IPMdHydase_ssu_swvl,superfamily_Acoase/IPM_deHydtase_lsu_aba,superfamily_Aconitase/3IPM_dehydase_swvl,prints_Acoase/IPM_deHydtase_lsu_aba,tigrfam_Aconitase/Fe_reg_prot_2	-	no_errors	ACO1	HGNC	ENSG00000122729				112	0	0	83	16	16.1616
UBAP2	0	genome.wustl.edu	37	9	33927811	33927811	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	33927811	33927811	C	T	SNP	UBAP2	ENST00000360802	human	ensembl	74_37	-1	known	silent	c.2355	p.A785	0.001	NULL	pfam_DUF3697_Uba2,pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBAP2	HGNC	ENSG00000137073				40	0	0	30	4	11.7647
UBAP2	0	genome.wustl.edu	37	9	33932594	33932594	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	33932594	33932594	G	A	SNP	UBAP2	ENST00000360802	human	ensembl	74_37	-1	known	missense	c.2141	p.A714V	0.592	NULL	pfam_DUF3697_Uba2,pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBAP2	HGNC	ENSG00000137073				29	0	0	27	3	10
PIGO	0	genome.wustl.edu	37	9	35089116	35089116	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	35089116	35089116	C	T	SNP	PIGO	ENST00000341666	human	ensembl	74_37	-1	known	silent	c.3243	p.R1081	0.056	NULL	pfam_Phosphodiest/P_Trfase,pfam_Metalloenzyme,pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	PIGO	HGNC	ENSG00000165282				154	0	0	112	29	20.5674
PIGO	0	genome.wustl.edu	37	9	35095095	35095095	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	35095095	35095095	G	A	SNP	PIGO	ENST00000341666	human	ensembl	74_37	-1	known	silent	c.468	p.H156	0.895	superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,pfam_Metalloenzyme,pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	PIGO	HGNC	ENSG00000165282				69	0	0	58	15	20.5479
TMEM8B	0	genome.wustl.edu	37	9	35842713	35842713	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	35842713	35842713	C	T	SNP	TMEM8B	ENST00000377988	human	ensembl	74_37	+1	known	missense	c.278	p.A93V	0.680	NULL	pfam_DUF3522	-	no_errors	TMEM8B	HGNC	ENSG00000137103				22	0	0	14	4	22.2222
LOC100996870	0	genome.wustl.edu	37	9	66466537	66466537	+	RNA	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	66466537	66466537	G	A	SNP	LOC100996870	ENST00000424345	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	RP11-262H14.1	Clone_based_vega_gene	ENSG00000238113				18	0	0	18	3	14.2857
PGM5	0	genome.wustl.edu	37	9	70993145	70993145	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	70993145	70993145	A	G	SNP	PGM5	ENST00000396396	human	ensembl	74_37	+1	known	missense	c.292	p.I98V	1.000	pfam_A-D-PHexomutase_a/b/a-I,superfamily_A-D-PHexomutase_a/b/a-I/II/III	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-III,pfam_A-D-PHexomutase_a/b/a-II,superfamily_A-D-PHexomutase_a/b/a-I/II/III,prints_Alpha-D-phosphohexomutase_SF	-	no_errors	PGM5	HGNC	ENSG00000154330				41	0	0	62	6	8.82353
KANK1	0	genome.wustl.edu	37	9	711849	711849	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	711849	711849	G	A	SNP	KANK1	ENST00000382297	human	ensembl	74_37	+1	known	silent	c.1083	p.T361	0.000	NULL	pfam_Ankyrin_rpt,pfam_KN_motif,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KANK1	HGNC	ENSG00000107104				43	0	0	42	6	12.5
PCSK5	0	genome.wustl.edu	37	9	78790138	78790138	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	78790138	78790138	A	G	SNP	PCSK5	ENST00000376767	human	ensembl	74_37	+1	known	missense	c.1993	p.K665E	0.037	NULL	pfam_Peptidase_S8/S53_dom,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53_dom,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK5	HGNC	ENSG00000099139				38	0	0	37	4	9.7561
PTPRD	0	genome.wustl.edu	37	9	8518269	8518269	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	8518269	8518269	C	T	SNP	PTPRD	ENST00000356435	human	ensembl	74_37	-1	known	silent	c.1122	p.A374	0.677	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRD	HGNC	ENSG00000153707				133	0	0	105	21	16.6667
SPATA31E1	0	genome.wustl.edu	37	9	90502650	90502650	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	90502650	90502650	T	C	SNP	SPATA31E1	ENST00000325643	human	ensembl	74_37	+1	known	missense	c.3248	p.V1083A	0.000	NULL	NULL	-	no_errors	SPATA31E1	HGNC	ENSG00000177992				49	0	0	48	8	14.2857
WNK2	0	genome.wustl.edu	37	9	96026289	96026289	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	96026289	96026289	G	A	SNP	WNK2	ENST00000297954	human	ensembl	74_37	+1	known	missense	c.3670	p.A1224T	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK2	HGNC	ENSG00000165238				31	0	0	16	2	11.1111
C9orf129	0	genome.wustl.edu	37	9	96097723	96097723	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	96097723	96097723	C	T	SNP	C9orf129	ENST00000375419	human	ensembl	74_37	-1	known	missense	c.298	p.A100T	0.982	NULL	NULL	-	no_errors	C9orf129	HGNC	ENSG00000204352				37	0	0	19	10	34.4828
FANCC	0	genome.wustl.edu	37	9	97869413	97869413	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	97869413	97869413	G	A	SNP	FANCC	ENST00000289081	human	ensembl	74_37	-1	known	missense	c.1468	p.L490F	0.771	pfam_Fanconi,pirsf_Fanconi,prints_Fanconi	pfam_Fanconi,pirsf_Fanconi,prints_Fanconi	-	no_errors	FANCC	HGNC	ENSG00000158169				45	0	0	32	6	15.7895
DMRT3	0	genome.wustl.edu	37	9	990216	990216	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	990216	990216	C	T	SNP	DMRT3	ENST00000190165	human	ensembl	74_37	+1	known	silent	c.630	p.N210	0.152	NULL	pfam_DM_DNA-bd,pfam_DMA,superfamily_DM_DNA-bd,superfamily_UBA-like,smart_DM_DNA-bd,pfscan_DM_DNA-bd	-	no_errors	DMRT3	HGNC	ENSG00000064218				59	0	0	42	15	26.3158
ZNF782	0	genome.wustl.edu	37	9	99581109	99581109	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	99581109	99581109	C	T	SNP	ZNF782	ENST00000481138	human	ensembl	74_37	-1	known	missense	c.1196	p.C399Y	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF782	HGNC	ENSG00000196597				123	0	0	99	20	16.8067
XKRX	0	genome.wustl.edu	37	X	100169759	100169759	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	X	100169759	100169759	G	A	SNP	XKRX	ENST00000328526	human	ensembl	74_37	-1	known	silent	c.957	p.V319	0.530	pfam_Transport_prot_XK	pfam_Transport_prot_XK	-	no_errors	XKRX	HGNC	ENSG00000182489				199	0	0	116	36	23.6842
AMOT	0	genome.wustl.edu	37	X	112035060	112035060	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	X	112035060	112035060	C	A	SNP	AMOT	ENST00000371959	human	ensembl	74_37	-1	known	missense	c.1926	p.Q642H	1.000	pfam_Angiomotin_C	pfam_Angiomotin_C,superfamily_Prefoldin,prints_Angiomotin	-	no_errors	AMOT	HGNC	ENSG00000126016				142	0	0	104	20	16.129
DOCK11	0	genome.wustl.edu	37	X	117722266	117722266	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	X	117722266	117722266	C	T	SNP	DOCK11	ENST00000276202	human	ensembl	74_37	+1	known	silent	c.1962	p.S654	1.000	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK11	HGNC	ENSG00000147251				71	0	0	71	15	17.4419
THOC2	0	genome.wustl.edu	37	X	122805587	122805587	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	X	122805587	122805587	G	C	SNP	THOC2	ENST00000245838	human	ensembl	74_37	-1	known	missense	c.794	p.S265C	1.000	NULL	pfam_THO_THOC2_C,pfam_THO_THOC2_N	-	no_errors	THOC2	HGNC	ENSG00000125676				97	0	0	64	23	26.4368
TLR8	0	genome.wustl.edu	37	X	12939516	12939516	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	X	12939516	12939516	G	T	SNP	TLR8	ENST00000218032	human	ensembl	74_37	+1	known	missense	c.2357	p.W786L	1.000	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,pfam_TIR_dom,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR8	HGNC	ENSG00000101916				121	0	0	82	27	24.7706
MAMLD1	0	genome.wustl.edu	37	X	149639052	149639052	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	X	149639052	149639052	A	G	SNP	MAMLD1	ENST00000432680	human	ensembl	74_37	+1	known	missense	c.1132	p.M378V	0.018	NULL	NULL	-	no_errors	MAMLD1	HGNC	ENSG00000013619				140	0	0	62	22	26.1905
SRPK3	0	genome.wustl.edu	37	X	153050422	153050422	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	X	153050422	153050422	G	A	SNP	SRPK3	ENST00000370101	human	ensembl	74_37	+1	known	missense	c.1390	p.E464K	1.000	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	SRPK3	HGNC	ENSG00000184343				19	0	0	15	5	25
MECP2	0	genome.wustl.edu	37	X	153296471	153296471	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	X	153296471	153296471	G	A	SNP	MECP2	ENST00000303391	human	ensembl	74_37	-1	known	nonsense	c.808	p.R270*	0.999	pirsf_Me_CpG-bd_MeCP2	pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_dom,superfamily_Ig_E-set,smart_Methyl_CpG_DNA-bd,pirsf_Me_CpG-bd_MeCP2,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MECP2	HGNC	ENSG00000169057				90	0	0	47	14	22.9508
BMX	0	genome.wustl.edu	37	X	15543416	15543416	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	X	15543416	15543416	G	A	SNP	BMX	ENST00000342014	human	ensembl	74_37	+1	known	missense	c.758	p.S253N	0.003	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_Pleckstrin_homology,pfam_Znf_Btk_motif,superfamily_Kinase-like_dom,smart_Pleckstrin_homology,smart_Znf_Btk_motif,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_Znf_Btk_motif,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_Znf_Btk_motif	-	no_errors	BMX	HGNC	ENSG00000102010				114	0	0	96	11	10.2804
ACE2	0	genome.wustl.edu	37	X	15585915	15585915	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	X	15585915	15585915	C	T	SNP	ACE2	ENST00000252519	human	ensembl	74_37	-1	known	missense	c.1931	p.R644Q	0.223	NULL	pfam_Peptidase_M2,prints_Peptidase_M2	-	no_errors	ACE2	HGNC	ENSG00000130234				96	0	0	67	13	16.25
NHS	0	genome.wustl.edu	37	X	17705908	17705908	+	Silent	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	X	17705908	17705908	C	T	SNP	NHS	ENST00000380060	human	ensembl	74_37	+1	known	silent	c.612	p.R204	0.216	NULL	NULL	-	no_errors	NHS	HGNC	ENSG00000188158				73	0	0	44	14	24.1379
PHEX	0	genome.wustl.edu	37	X	22117151	22117151	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	X	22117151	22117151	G	A	SNP	PHEX	ENST00000379374	human	ensembl	74_37	+1	known	missense	c.961	p.V321I	1.000	pfam_Peptidase_M13_N	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	PHEX	HGNC	ENSG00000102174				134	0	0	82	22	21.1538
ZBED1	0	genome.wustl.edu	37	X	2407303	2407303	+	Silent	SNP	G	G	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	X	2407303	2407303	G	A	SNP	ZBED1	ENST00000381218	human	ensembl	74_37	-1	known	silent	c.1458	p.S486	0.225	superfamily_RNaseH-like_dom	pfam_HATC_dom_C,pfam_Znf_BED_prd,superfamily_RNaseH-like_dom,smart_Znf_BED_prd,pfscan_Znf_BED_prd	-	no_errors	ZBED1	HGNC	ENSG00000214717				91	0	0	41	7	14.5833
DCAF8L1	0	genome.wustl.edu	37	X	27997798	27997798	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	X	27997798	27997798	C	T	SNP	DCAF8L1	ENST00000441525	human	ensembl	74_37	-1	known	missense	c.1654	p.V552M	0.445	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF8L1	HGNC	ENSG00000226372				135	0	0	89	17	16.0377
PPP2R3B	0	genome.wustl.edu	37	X	306335	306335	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	X	306335	306335	C	T	SNP	PPP2R3B	ENST00000390665	human	ensembl	74_37	-1	known	missense	c.952	p.V318I	1.000	NULL	pfscan_EF_hand_dom	-	no_errors	PPP2R3B	HGNC	ENSG00000167393				90	0	0	44	17	27.8689
DMD	0	genome.wustl.edu	37	X	31676228	31676228	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	X	31676228	31676228	T	G	SNP	DMD	ENST00000357033	human	ensembl	74_37	-1	known	missense	c.7906	p.N2636H	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947				117	0	0	64	16	20
DMD	0	genome.wustl.edu	37	X	31792185	31792185	+	Silent	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	X	31792185	31792185	A	G	SNP	DMD	ENST00000357033	human	ensembl	74_37	-1	known	silent	c.7434	p.A2478	0.998	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947				120	0	0	90	10	10
USP11	0	genome.wustl.edu	37	X	47098875	47098875	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	X	47098875	47098875	C	T	SNP	USP11	ENST00000218348	human	ensembl	74_37	+1	known	missense	c.541	p.R181C	1.000	pfam_Pept_C19_DUSP,smart_Pept_C19_DUSP	pfam_Peptidase_C19/C67,pfam_Pept_C19_DUSP,smart_Pept_C19_DUSP,pfscan_Peptidase_C19/C67	-	no_errors	USP11	HGNC	ENSG00000102226				46	0	0	23	7	23.3333
PAGE1	0	genome.wustl.edu	37	X	49459349	49459349	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	X	49459349	49459349	A	G	SNP	PAGE1	ENST00000376150	human	ensembl	74_37	-1	known	missense	c.25	p.Y9H	0.001	pfam_GAGE	pfam_GAGE	-	no_errors	PAGE1	HGNC	ENSG00000068985				48	0	0	32	9	21.9512
KDM5C	0	genome.wustl.edu	37	X	53228052	53228052	+	Silent	SNP	A	A	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	X	53228052	53228052	A	G	SNP	KDM5C	ENST00000375401	human	ensembl	74_37	-1	known	silent	c.2262	p.D754	1.000	pfam_Znf_C5HC2	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_Znf_PHD-finger,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5C	HGNC	ENSG00000126012				100	0	0	59	7	10.6061
AMY2B	0	genome.wustl.edu	37	1	104122059	104122059	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	104122059	104122059	T	-	DEL	AMY2B	ENST00000361355	human	ensembl	74_37	+1	known	frame_shift_del	c.1473	p.S493fs	0.212	pfam_A-amylase_b_C,smart_A-amylase_b_C	pfam_Glyco_hydro_13_cat_dom,pfam_A-amylase_b_C,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom,smart_A-amylase_b_C,prints_Alpha_amylase	-	no_errors	AMY2B	HGNC	ENSG00000240038				378	0	0	358	39	9.82368
SARS	0	genome.wustl.edu	37	1	109766656	109766657	+	Frame_Shift_Del	DEL	GG	GG	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	GG	GG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	109766656	109766657	GG	-	DEL	SARS	ENST00000369923	human	ensembl	74_37	+1	known	frame_shift_del	c.193_194	p.G65fs	1.000:1.000	pfam_Ser-tRNA-synth_1_N,superfamily_tRNA-bd_arm,pirsf_Ser-tRNA-ligase_type_1,tigrfam_Ser-tRNA-ligase_type_1	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Ser-tRNA-synth_1_N,superfamily_tRNA-bd_arm,pirsf_Ser-tRNA-ligase_type_1,pfscan_aa-tRNA-synth_II,prints_Ser-tRNA-ligase_type_1,tigrfam_Ser-tRNA-ligase_type_1	-	no_errors	SARS	HGNC	ENSG00000031698				189	0	0	164	31	15.8974
C1orf127	0	genome.wustl.edu	37	1	11007833	11007833	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	11007833	11007833	C	-	DEL	C1orf127	ENST00000377004	human	ensembl	74_37	-1	known	frame_shift_del	c.2359	p.A787fs	0.000	superfamily_DNA-bd_dom_put	superfamily_DNA-bd_dom_put	-	no_errors	C1orf127	HGNC	ENSG00000175262				13	0	0	7	3	30
KCNC4	0	genome.wustl.edu	37	1	110766448	110766448	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	110766448	110766448	C	-	DEL	KCNC4	ENST00000369787	human	ensembl	74_37	+1	known	frame_shift_del	c.1541	p.R516fs	1.000	prints_K_chnl_volt-dep_Kv3.4	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_K_chnl_volt-dep_Kv3_ID,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv3.4,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9	-	no_errors	KCNC4	HGNC	ENSG00000116396				52	0	0	43	4	8.51064
OVGP1	0	genome.wustl.edu	37	1	111957125	111957125	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	111957125	111957125	T	-	DEL	OVGP1	ENST00000369732	human	ensembl	74_37	-1	known	frame_shift_del	c.1998	p.E667fs	0.332	NULL	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	-	no_errors	OVGP1	HGNC	ENSG00000085465				70	0	0	73	15	17.0455
PTCHD2	0	genome.wustl.edu	37	1	11574466	11574466	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	11574466	11574466	G	-	DEL	PTCHD2	ENST00000294484	human	ensembl	74_37	+1	known	frame_shift_del	c.1336	p.T448fs	1.000	pfam_Patched,pfam_MMPL_dom	pfam_Patched,pfam_MMPL_dom,pfscan_SSD	-	no_errors	PTCHD2	HGNC	ENSG00000204624				90	0	0	81	15	15.625
HSD3B1	0	genome.wustl.edu	37	1	120056669	120056669	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	120056669	120056669	A	-	DEL	HSD3B1	ENST00000235547	human	ensembl	74_37	+1	known	frame_shift_del	c.529	p.N178fs	0.821	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_Male_sterile_NAD-bd,pfam_dTDP_dehydrorham_reduct	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_Male_sterile_NAD-bd,pfam_Polysac_CapD-like,pfam_DH_sc/Rdtase_SDR,pfam_dTDP_dehydrorham_reduct,pfam_PKS_KR,pfam_NmrA	-	no_errors	HSD3B1	HGNC	ENSG00000203857				87	0	0	65	10	13.3333
ADAM30	0	genome.wustl.edu	37	1	120437095	120437095	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	120437095	120437095	T	-	DEL	ADAM30	ENST00000369400	human	ensembl	74_37	-1	known	frame_shift_del	c.1865	p.N622fs	0.000	smart_ADAM_Cys-rich	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM30	HGNC	ENSG00000134249				80	0	0	68	12	15
NOTCH2	0	genome.wustl.edu	37	1	120458005	120458005	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	120458005	120458005	C	-	DEL	NOTCH2	ENST00000256646	human	ensembl	74_37	-1	known	frame_shift_del	c.7340	p.G2447fs	0.997	pirsf_Notch	pirsf_Notch,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,pfam_EGF_extracell,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_2,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH2	HGNC	ENSG00000134250				67	0	0	90	14	13.4615
AADACL3	0	genome.wustl.edu	37	1	12785494	12785494	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	12785494	12785494	G	-	DEL	AADACL3	ENST00000359318	human	ensembl	74_37	+1	known	frame_shift_del	c.584	p.C195fs	0.040	NULL	pfam_AB_hydrolase_3	-	no_errors	AADACL3	HGNC	ENSG00000188984				195	0	0	157	31	16.4894
PRDM2	0	genome.wustl.edu	37	1	14105166	14105166	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	14105166	14105166	G	-	DEL	PRDM2	ENST00000235372	human	ensembl	74_37	+1	known	frame_shift_del	c.876	p.E294fs	0.727	pirsf_RIZ_retinblastoma-bd_prot	pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pirsf_RIZ_retinblastoma-bd_prot,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM2	HGNC	ENSG00000116731				73	0	0	68	17	20
SETDB1	0	genome.wustl.edu	37	1	150933159	150933159	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	150933159	150933159	C	-	DEL	SETDB1	ENST00000271640	human	ensembl	74_37	+1	known	frame_shift_del	c.2621	p.C876fs	1.000	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	pfam_SET_dom,pfam_Pre-SET_dom,pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_dom,smart_Tudor,smart_Methyl_CpG_DNA-bd,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Methyl_CpG_DNA-bd,pfscan_SET_dom,pfscan_Pre-SET_dom,pfscan_Post-SET_dom	-	no_errors	SETDB1	HGNC	ENSG00000143379				146	0	0	109	16	12.8
RIT1	0	genome.wustl.edu	37	1	155880587	155880587	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	155880587	155880587	A	-	DEL	RIT1	ENST00000368322	human	ensembl	74_37	-1	known	frame_shift_del	c.17	p.F6fs	0.000	NULL	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RIT1	HGNC	ENSG00000143622				47	0	0	53	8	13.1148
GPATCH4	0	genome.wustl.edu	37	1	156565504	156565504	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	156565504	156565504	T	-	DEL	GPATCH4	ENST00000438976	human	ensembl	74_37	-1	known	frame_shift_del	c.629	p.K210fs	0.999	NULL	pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	GPATCH4	HGNC	ENSG00000160818				84	0	0	60	12	16.6667
OR6K2	0	genome.wustl.edu	37	1	158669503	158669503	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	158669503	158669503	A	-	DEL	OR6K2	ENST00000359610	human	ensembl	74_37	-1	known	frame_shift_del	c.940	p.S314fs	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6K2	HGNC	ENSG00000196171				102	0	0	70	16	18.6047
SPEN	0	genome.wustl.edu	37	1	16259480	16259480	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	16259480	16259480	C	-	DEL	SPEN	ENST00000375759	human	ensembl	74_37	+1	known	frame_shift_del	c.6745	p.A2251fs	0.000	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC_like_C_dom,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526				137	0	0	91	8	8.08081
GPR161	0	genome.wustl.edu	37	1	168054869	168054869	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	168054869	168054869	C	-	DEL	GPR161	ENST00000537209	human	ensembl	74_37	-1	known	frame_shift_del	c.1550	p.G517fs	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR161	HGNC	ENSG00000143147				85	0	0	59	6	9.23077
SCYL3	0	genome.wustl.edu	37	1	169823717	169823718	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	169823717	169823718	-	C	INS	SCYL3	ENST00000367770	human	ensembl	74_37	-1	known	frame_shift_ins	c.1863_1862	p.I623fs	0.000:0.002	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_HEAT_type_2,pfscan_Prot_kinase_dom	-	no_errors	SCYL3	HGNC	ENSG00000000457				110	0	0	104	12	10.3448
KIFAP3	0	genome.wustl.edu	37	1	170004605	170004605	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	170004605	170004605	A	-	DEL	KIFAP3	ENST00000361580	human	ensembl	74_37	-1	known	frame_shift_del	c.607	p.C203fs	1.000	NULL	superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	KIFAP3	HGNC	ENSG00000075945				40	0	0	42	8	16
MST1L	0	genome.wustl.edu	37	1	17082264	17082264	+	RNA	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	17082264	17082264	G	-	DEL	MST1L	ENST00000455405	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.186	-	-	-	no_errors	MST1L	HGNC	ENSG00000186715				9	0	0	8	4	33.3333
SLC9C2	0	genome.wustl.edu	37	1	173552688	173552688	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	173552688	173552688	A	-	DEL	SLC9C2	ENST00000367714	human	ensembl	74_37	-1	known	frame_shift_del	c.597	p.F199fs	0.212	pfam_Cation/H_exchanger	pfam_Cation/H_exchanger,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	-	no_errors	SLC9C2	HGNC	ENSG00000162753				76	0	0	78	10	11.3636
FAM163A	0	genome.wustl.edu	37	1	179783166	179783166	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	179783166	179783166	G	-	DEL	FAM163A	ENST00000341785	human	ensembl	74_37	+1	known	frame_shift_del	c.346	p.G117fs	1.000	NULL	NULL	-	no_errors	FAM163A	HGNC	ENSG00000143340				54	0	0	41	8	16.3265
COLGALT2	0	genome.wustl.edu	37	1	183944249	183944249	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	183944249	183944249	T	-	DEL	COLGALT2	ENST00000361927	human	ensembl	74_37	-1	known	frame_shift_del	c.474	p.K158fs	0.997	NULL	pfam_Glyco_trans_25	-	no_errors	COLGALT2	HGNC	ENSG00000198756				93	0	0	68	11	13.9241
CFHR4	0	genome.wustl.edu	37	1	196887419	196887419	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	196887419	196887419	A	-	DEL	CFHR4	ENST00000367416	human	ensembl	74_37	+1	known	frame_shift_del	c.1617	p.T541fs	0.003	superfamily_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR4	HGNC	ENSG00000134365				102	0	0	114	26	18.5714
PPP1R12B	0	genome.wustl.edu	37	1	202407190	202407190	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	202407190	202407190	T	-	DEL	PPP1R12B	ENST00000480184	human	ensembl	74_37	+1	novel	frame_shift_del	c.1496	p.F502fs	0.041	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	PPP1R12B	HGNC	ENSG00000077157				39	0	0	41	18	30.5085
PRELP	0	genome.wustl.edu	37	1	203452549	203452549	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	203452549	203452549	C	-	DEL	PRELP	ENST00000343110	human	ensembl	74_37	+1	known	frame_shift_del	c.237	p.P81fs	1.000	pfam_LRR-contain_N,smart_LRR-contain_N	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	PRELP	HGNC	ENSG00000188783				106	0	0	66	16	19.5122
ELK4	0	genome.wustl.edu	37	1	205589099	205589099	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	205589099	205589099	A	-	DEL	ELK4	ENST00000357992	human	ensembl	74_37	-1	known	frame_shift_del	c.1075	p.S359fs	0.998	NULL	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ELK4	HGNC	ENSG00000158711				88	0	0	66	6	8.33333
SLC26A9	0	genome.wustl.edu	37	1	205884287	205884287	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	205884287	205884287	C	-	DEL	SLC26A9	ENST00000340781	human	ensembl	74_37	-1	known	frame_shift_del	c.2397	p.C800fs	0.000	NULL	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A9	HGNC	ENSG00000174502				27	0	0	30	5	14.2857
SLC30A1	0	genome.wustl.edu	37	1	211749384	211749384	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	211749384	211749384	G	-	DEL	SLC30A1	ENST00000367001	human	ensembl	74_37	-1	known	frame_shift_del	c.870	p.C291fs	1.000	pfam_Cation_efflux	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A1	HGNC	ENSG00000170385				158	0	0	119	22	15.6028
GNPAT	0	genome.wustl.edu	37	1	231411232	231411234	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	231411232	231411234	AGA	-	DEL	GNPAT	ENST00000366647	human	ensembl	74_37	+1	known	in_frame_del	c.1925_1927	p.K645in_frame_del	0.002:0.011:0.174	NULL	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase	-	no_errors	GNPAT	HGNC	ENSG00000116906				96	0	0	82	6	6.81818
DISC1	0	genome.wustl.edu	37	1	231954130	231954131	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	231954130	231954131	AG	-	DEL	DISC1	ENST00000439617	human	ensembl	74_37	+1	known	frame_shift_del	c.1848_1849	p.E619fs	0.000:0.971	NULL	superfamily_Prefoldin	-	no_errors	DISC1	HGNC	ENSG00000162946				131	0	0	118	20	14.4928
TARBP1	0	genome.wustl.edu	37	1	234565327	234565327	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	234565327	234565327	T	-	DEL	TARBP1	ENST00000040877	human	ensembl	74_37	-1	novel	frame_shift_del	c.2706	p.K902fs	0.000	NULL	pfam_SpoU_MeTrfase,superfamily_ARM-type_fold	-	no_errors	TARBP1	HGNC	ENSG00000059588				115	0	0	99	25	20.1613
RBM34	0	genome.wustl.edu	37	1	235323946	235323947	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	235323946	235323947	-	T	INS	RBM34	ENST00000408888	human	ensembl	74_37	-1	known	frame_shift_ins	c.245_244	p.T82fs	0.962:0.968	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM34	HGNC	ENSG00000188739				207	0	0	156	13	7.69231
RYR2	0	genome.wustl.edu	37	1	237969494	237969494	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	237969494	237969494	T	-	DEL	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	frame_shift_del	c.14227	p.F4745fs	1.000	pfam_Ion_trans_dom	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626				49	0	0	44	13	22.807
SRSF4	0	genome.wustl.edu	37	1	29475698	29475703	+	In_Frame_Del	DEL	GGCTCC	GGCTCC	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	GGCTCC	GGCTCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	29475698	29475703	GGCTCC	-	DEL	SRSF4	ENST00000373795	human	ensembl	74_37	-1	known	in_frame_del	c.709_704	p.RS235in_frame_del	0.998:1.000:1.000:1.000:0.997:1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SRSF4	HGNC	ENSG00000116350				52	0	0	49	7	12.5
HCRTR1	0	genome.wustl.edu	37	1	32084832	32084832	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	32084832	32084832	C	-	DEL	HCRTR1	ENST00000373706	human	ensembl	74_37	+1	known	frame_shift_del	c.39	p.P15fs	0.996	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Orexin_rcpt,prints_GPCR_Rhodpsn,prints_Orexin_rcpt_1,prints_NPY_rcpt	-	no_errors	HCRTR1	HGNC	ENSG00000121764				52	0	0	40	8	16.6667
AGO1	0	genome.wustl.edu	37	1	36354045	36354045	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	36354045	36354045	C	-	DEL	AGO1	ENST00000373204	human	ensembl	74_37	+1	known	frame_shift_del	c.43	p.L17fs	1.000	NULL	pfam_Piwi,pfam_PAZ_dom,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	AGO1	HGNC	ENSG00000092847				71	0	0	48	8	14.2857
CCDC27	0	genome.wustl.edu	37	1	3688024	3688025	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	3688024	3688025	-	C	INS	CCDC27	ENST00000294600	human	ensembl	74_37	+1	known	frame_shift_ins	c.1908_1909	p.L638fs	0.063:0.211	NULL	superfamily_Prefoldin	-	no_errors	CCDC27	HGNC	ENSG00000162592				106	0	0	76	12	13.6364
STIL	0	genome.wustl.edu	37	1	47717309	47717309	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	47717309	47717309	T	-	DEL	STIL	ENST00000371877	human	ensembl	74_37	-1	known	frame_shift_del	c.3366	p.K1122fs	1.000	NULL	NULL	-	no_errors	STIL	HGNC	ENSG00000123473				177	0	0	168	33	16.4179
RPL22	0	genome.wustl.edu	37	1	6257785	6257785	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	6257785	6257785	T	-	DEL	RPL22	ENST00000234875	human	ensembl	74_37	-1	known	frame_shift_del	c.44	p.K15fs	1.000	pfam_Ribosomal_L22e	pfam_Ribosomal_L22e	-	no_errors	RPL22	HGNC	ENSG00000116251				56	0	0	30	6	16.6667
JAK1	0	genome.wustl.edu	37	1	65325833	65325833	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	65325833	65325833	G	-	DEL	JAK1	ENST00000342505	human	ensembl	74_37	-1	known	frame_shift_del	c.1289	p.P430fs	0.995	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak1,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_SH2,pfscan_Prot_kinase_dom	-	no_errors	JAK1	HGNC	ENSG00000162434				76	0	0	37	6	13.9535
JAK1	0	genome.wustl.edu	37	1	65339111	65339111	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	65339111	65339111	T	-	DEL	JAK1	ENST00000342505	human	ensembl	74_37	-1	known	frame_shift_del	c.425	p.K142fs	1.000	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak1,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_SH2,pfscan_Prot_kinase_dom	-	no_errors	JAK1	HGNC	ENSG00000162434				65	0	0	59	9	13.2353
DEPDC1	0	genome.wustl.edu	37	1	68960310	68960310	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	68960310	68960310	T	-	DEL	DEPDC1	ENST00000456315	human	ensembl	74_37	-1	known	frame_shift_del	c.117	p.K39fs	0.995	pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	pfam_DEP_dom,superfamily_Rho_GTPase_activation_prot,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	DEPDC1	HGNC	ENSG00000024526				57	0	0	42	9	17.6471
LRRIQ3	0	genome.wustl.edu	37	1	74492558	74492559	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	74492558	74492559	-	T	INS	LRRIQ3	ENST00000354431	human	ensembl	74_37	-1	known	frame_shift_ins	c.1814_1813	p.T605fs	0.899:0.187	NULL	pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ3	HGNC	ENSG00000162620				33	0	0	31	8	20.5128
NEXN	0	genome.wustl.edu	37	1	78392423	78392424	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	78392423	78392424	-	A	INS	NEXN	ENST00000334785	human	ensembl	74_37	+1	known	frame_shift_ins	c.710_711	p.E240fs	0.005:0.000	NULL	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	NEXN	HGNC	ENSG00000162614				126	0	0	113	16	12.4031
PER3	0	genome.wustl.edu	37	1	7858597	7858597	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	7858597	7858597	C	-	DEL	PER3	ENST00000361923	human	ensembl	74_37	+1	known	frame_shift_del	c.654	p.D218fs	0.006	NULL	pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,superfamily_PAS,smart_PAS,pfscan_PAS	-	no_errors	PER3	HGNC	ENSG00000049246				89	0	0	87	17	16.3462
CLCA4	0	genome.wustl.edu	37	1	87025666	87025666	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	87025666	87025666	T	-	DEL	CLCA4	ENST00000370563	human	ensembl	74_37	+1	known	frame_shift_del	c.211	p.F73fs	0.527	pfam_Cl_channel_Ca,tigrfam_CaCC_prot	pfam_Cl_channel_Ca,pfam_DUF1973,pfam_VWF_A,superfamily_Fibronectin_type3,smart_VWF_A,pfscan_VWF_A,tigrfam_CaCC_prot	-	no_errors	CLCA4	HGNC	ENSG00000016602				142	0	0	123	11	8.20896
ZNF644	0	genome.wustl.edu	37	1	91406040	91406040	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	91406040	91406040	T	-	DEL	ZNF644	ENST00000337393	human	ensembl	74_37	-1	known	frame_shift_del	c.871	p.R291fs	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF644	HGNC	ENSG00000122482				61	0	0	80	8	9.09091
HFM1	0	genome.wustl.edu	37	1	91727872	91727873	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	91727872	91727873	-	T	INS	HFM1	ENST00000370425	human	ensembl	74_37	-1	known	frame_shift_ins	c.4164_4163	p.N1388fs	0.000:0.000	NULL	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	HFM1	HGNC	ENSG00000162669				68	0	0	71	8	10.1266
DPYD	0	genome.wustl.edu	37	1	97771791	97771791	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	1	97771791	97771791	A	-	DEL	DPYD	ENST00000370192	human	ensembl	74_37	-1	known	frame_shift_del	c.2121	p.F707fs	1.000	pfam_Dihydroorotate_DH_1_2,pfam_tRNA_hU_synthase,tigrfam_Dihydroorotate_DH	pfam_Dihydroorotate_DH_1_2,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_tRNA_hU_synthase,superfamily_Helical_ferredxn,prints_FAD_pyr_nucl-diS_OxRdtase,tigrfam_Dihydroorotate_DH	-	no_errors	DPYD	HGNC	ENSG00000188641				280	0	0	244	31	11.2727
NFKB2	0	genome.wustl.edu	37	10	104158163	104158163	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	104158163	104158163	C	-	DEL	NFKB2	ENST00000369966	human	ensembl	74_37	+1	known	frame_shift_del	c.874	p.Y294fs	1.000	superfamily_Ig_E-set,smart_IPT,prints_NF_Rel_Dor	pfam_RHD,pfam_Ankyrin_rpt,pfam_Death_domain,superfamily_p53-like_TF_DNA-bd,superfamily_Ankyrin_rpt-contain_dom,superfamily_Ig_E-set,superfamily_DEATH-like_dom,smart_IPT,smart_Ankyrin_rpt,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_RHD,prints_NF_Rel_Dor,prints_Ankyrin_rpt	-	no_errors	NFKB2	HGNC	ENSG00000077150				143	0	0	125	12	8.75912
ADD3	0	genome.wustl.edu	37	10	111893350	111893350	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	111893350	111893350	A	-	DEL	ADD3	ENST00000356080	human	ensembl	74_37	+1	known	frame_shift_del	c.2095	p.K701fs	1.000	NULL	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	-	no_errors	ADD3	HGNC	ENSG00000148700				157	0	0	132	15	10.2041
NRAP	0	genome.wustl.edu	37	10	115383370	115383370	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	115383370	115383370	T	-	DEL	NRAP	ENST00000369358	human	ensembl	74_37	-1	known	frame_shift_del	c.2399	p.N800fs	0.993	pfam_Nebulin_35r-motif,smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_Znf_LIM,smart_Znf_LIM,smart_Nebulin_35r-motif,pfscan_Znf_LIM,pfscan_Nebulin_35r-motif,prints_Nebulin	-	no_errors	NRAP	HGNC	ENSG00000197893				143	0	0	115	21	15.4412
ABLIM1	0	genome.wustl.edu	37	10	116232886	116232886	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	116232886	116232886	T	-	DEL	ABLIM1	ENST00000277895	human	ensembl	74_37	-1	known	frame_shift_del	c.1125	p.V376fs	1.000	NULL	pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM	-	no_errors	ABLIM1	HGNC	ENSG00000099204				98	0	0	87	6	6.45161
INPP5F	0	genome.wustl.edu	37	10	121551681	121551681	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	121551681	121551681	T	-	DEL	INPP5F	ENST00000361976	human	ensembl	74_37	+1	known	frame_shift_del	c.625	p.W211fs	1.000	pfam_Syja_N,pfscan_Syja_N	pfam_Syja_N,pfam_Inositol_phosphatase,pfscan_Syja_N	-	no_errors	INPP5F	HGNC	ENSG00000198825				57	0	0	47	7	12.963
TACC2	0	genome.wustl.edu	37	10	123844356	123844356	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	123844356	123844356	C	-	DEL	TACC2	ENST00000334433	human	ensembl	74_37	+1	known	frame_shift_del	c.2341	p.Q783fs	0.000	NULL	pfam_TACC	-	no_errors	TACC2	HGNC	ENSG00000138162				81	0	0	54	10	15.625
OPTN	0	genome.wustl.edu	37	10	13151192	13151192	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	13151192	13151192	C	-	DEL	OPTN	ENST00000263036	human	ensembl	74_37	+1	known	frame_shift_del	c.70	p.H26fs	1.000	NULL	pfam_NEMO_N	-	no_errors	OPTN	HGNC	ENSG00000123240				126	0	0	88	14	13.7255
FAM171A1	0	genome.wustl.edu	37	10	15255036	15255036	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	15255036	15255036	G	-	DEL	FAM171A1	ENST00000378116	human	ensembl	74_37	-1	known	frame_shift_del	c.2551	p.H851fs	0.011	pfam_Uncharacterised_FAM171	pfam_Uncharacterised_FAM171	-	no_errors	FAM171A1	HGNC	ENSG00000148468				113	0	0	81	14	14.7368
CUBN	0	genome.wustl.edu	37	10	16949569	16949569	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	16949569	16949569	A	-	DEL	CUBN	ENST00000377833	human	ensembl	74_37	-1	known	frame_shift_del	c.7643	p.F2548fs	0.992	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611				66	0	0	64	7	9.85915
PFKP	0	genome.wustl.edu	37	10	3174595	3174596	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	3174595	3174596	-	A	INS	PFKP	ENST00000381125	human	ensembl	74_37	+1	known	frame_shift_ins	c.1872_1873	p.M625fs	1.000:1.000	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,tigrfam_6-phosphofructokinase_euk	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,prints_Phosphofructokinase,tigrfam_6-phosphofructokinase_euk	-	no_errors	PFKP	HGNC	ENSG00000067057				263	0	0	172	25	12.6904
ZNF248	0	genome.wustl.edu	37	10	38121237	38121237	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	38121237	38121237	C	-	DEL	ZNF248	ENST00000357328	human	ensembl	74_37	-1	known	frame_shift_del	c.1046	p.G349fs	0.075	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF248	HGNC	ENSG00000198105				143	0	0	117	20	14.5985
RTKN2	0	genome.wustl.edu	37	10	63958149	63958149	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	63958149	63958149	T	-	DEL	RTKN2	ENST00000373789	human	ensembl	74_37	-1	known	frame_shift_del	c.1348	p.I450fs	1.000	NULL	pfam_Pleckstrin_homology,superfamily_HR1_rho-bd,smart_HR1_rho-bd,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	RTKN2	HGNC	ENSG00000182010				105	0	0	75	12	13.7931
CTNNA3	0	genome.wustl.edu	37	10	67680208	67680208	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	67680208	67680208	T	-	DEL	CTNNA3	ENST00000373744	human	ensembl	74_37	-1	known	frame_shift_del	c.2568	p.K856fs	0.996	pfam_Vinculin/catenin,prints_Alpha_catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA3	HGNC	ENSG00000183230				106	0	0	80	14	14.8936
DDX50	0	genome.wustl.edu	37	10	70670982	70670982	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	70670982	70670982	A	-	DEL	DDX50	ENST00000373585	human	ensembl	74_37	+1	known	frame_shift_del	c.619	p.S209fs	0.998	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_GUCT,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX50	HGNC	ENSG00000107625				172	0	0	140	22	13.5802
LARP4B	0	genome.wustl.edu	37	10	890938	890939	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	890938	890939	-	T	INS	LARP4B	ENST00000316157	human	ensembl	74_37	-1	known	frame_shift_ins	c.488_487	p.T163fs	1.000:1.000	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP4B	HGNC	ENSG00000107929				80	0	0	68	14	17.0732
PTEN	0	genome.wustl.edu	37	10	89717770	89717770	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	89717770	89717770	A	-	DEL	PTEN	ENST00000371953	human	ensembl	74_37	+1	known	frame_shift_del	c.795	p.K267fs	0.994	pfam_Tensin_phosphatase_C2-dom,superfamily_C2_dom,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tensin_phosphatase_C2-dom	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_dom,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862				73	0	0	64	17	20.9877
SLC16A12	0	genome.wustl.edu	37	10	91203598	91203598	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	91203598	91203598	A	-	DEL	SLC16A12	ENST00000371790	human	ensembl	74_37	-1	known	frame_shift_del	c.219	p.F73fs	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A12	HGNC	ENSG00000152779				58	0	0	57	13	18.5714
KIF20B	0	genome.wustl.edu	37	10	91478521	91478521	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	91478521	91478521	T	-	DEL	KIF20B	ENST00000416354	human	ensembl	74_37	+1	known	frame_shift_del	c.1326	p.F444fs	0.995	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF20B	HGNC	ENSG00000138182				62	0	0	65	7	9.72222
HECTD2	0	genome.wustl.edu	37	10	93247481	93247481	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	93247481	93247481	A	-	DEL	HECTD2	ENST00000446394	human	ensembl	74_37	+1	known	frame_shift_del	c.1149	p.I386fs	1.000	NULL	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	-	no_errors	HECTD2	HGNC	ENSG00000165338				117	0	0	103	11	9.64912
ARHGAP19-SLIT1	0	genome.wustl.edu	37	10	99019160	99019160	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	10	99019160	99019160	T	-	DEL	ARHGAP19-SLIT1	ENST00000453547	human	ensembl	74_37	-1	known	frame_shift_del	c.839	p.N280fs	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP19-SLIT1	HGNC	ENSG00000269891				147	0	0	116	24	17.1429
ELMOD1	0	genome.wustl.edu	37	11	107535793	107535794	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	107535793	107535794	-	C	INS	ELMOD1	ENST00000265840	human	ensembl	74_37	+1	known	frame_shift_ins	c.875_876	p.M294fs	1.000:1.000	pfam_Engulfment_cell_motility_ELMO	pfam_Engulfment_cell_motility_ELMO	-	no_errors	ELMOD1	HGNC	ENSG00000110675				191	0	0	180	14	7.21649
KDELC2	0	genome.wustl.edu	37	11	108352942	108352944	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	108352942	108352944	AGA	-	DEL	KDELC2	ENST00000323468	human	ensembl	74_37	-1	known	in_frame_del	c.692_690	p.L231in_frame_del	1.000:0.998:0.948	pfam_LipoPS_modifying,smart_LipoPS_modifying	pfam_LipoPS_modifying,pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,smart_LipoPS_modifying,pfscan_Filamin/ABP280_repeat-like	-	no_errors	KDELC2	HGNC	ENSG00000178202				53	0	0	50	9	15.2542
ZC3H12C	0	genome.wustl.edu	37	11	110035762	110035762	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	110035762	110035762	C	-	DEL	ZC3H12C	ENST00000278590	human	ensembl	74_37	+1	known	frame_shift_del	c.1952	p.D653fs	1.000	NULL	pfam_RNase_Zc3h12	-	no_errors	ZC3H12C	HGNC	ENSG00000149289				199	0	0	141	23	14.0244
FDXACB1	0	genome.wustl.edu	37	11	111745971	111745971	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	111745971	111745971	T	-	DEL	FDXACB1	ENST00000260257	human	ensembl	74_37	-1	known	frame_shift_del	c.1550	p.N517fs	0.285	NULL	pfam_DUF2431,pfam_PheS_beta_Fdx_antiC-bd,superfamily_PheS_beta_Fdx_antiC-bd,smart_PheS_beta_Fdx_antiC-bd	-	no_errors	FDXACB1	HGNC	ENSG00000255561				74	0	0	56	15	21.1268
BCO2	0	genome.wustl.edu	37	11	112071414	112071414	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	112071414	112071414	G	-	DEL	BCO2	ENST00000357685	human	ensembl	74_37	+1	known	frame_shift_del	c.944	p.G316fs	0.299	pfam_Carotenoid_Oase	pfam_Carotenoid_Oase	-	no_errors	BCO2	HGNC	ENSG00000197580				118	0	0	119	17	12.5
POU2F3	0	genome.wustl.edu	37	11	120187961	120187963	+	In_Frame_Del	DEL	AAC	AAC	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	AAC	AAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	120187961	120187963	AAC	-	DEL	POU2F3	ENST00000260264	human	ensembl	74_37	+1	known	in_frame_del	c.1165_1167	p.N390in_frame_del	1.000:1.000:1.000	NULL	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU,prints_TF_octamer	-	no_errors	POU2F3	HGNC	ENSG00000137709				125	0	0	105	15	12.5
KCNJ1	0	genome.wustl.edu	37	11	128709635	128709635	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	128709635	128709635	T	-	DEL	KCNJ1	ENST00000392664	human	ensembl	74_37	-1	known	frame_shift_del	c.561	p.K187fs	0.909	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir1.1,prints_K_chnl_inward-rec_Kir	-	no_errors	KCNJ1	HGNC	ENSG00000151704				115	0	0	89	19	17.5926
PRDM10	0	genome.wustl.edu	37	11	129827738	129827738	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	129827738	129827738	G	-	DEL	PRDM10	ENST00000358825	human	ensembl	74_37	-1	known	frame_shift_del	c.137	p.P46fs	0.996	NULL	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	PRDM10	HGNC	ENSG00000170325				248	0	0	204	25	10.917
MYOD1	0	genome.wustl.edu	37	11	17741373	17741373	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	17741373	17741373	C	-	DEL	MYOD1	ENST00000250003	human	ensembl	74_37	+1	known	frame_shift_del	c.44	p.D17fs	1.000	smart_Basic	pfam_Basic,pfam_Myf5,pfam_bHLH_dom,superfamily_bHLH_dom,smart_Basic,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MYOD1	HGNC	ENSG00000129152				84	0	0	49	7	12.5
ZDHHC13	0	genome.wustl.edu	37	11	19177422	19177422	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	19177422	19177422	T	-	DEL	ZDHHC13	ENST00000446113	human	ensembl	74_37	+1	known	frame_shift_del	c.953	p.L319fs	1.000	NULL	pfam_Ankyrin_rpt,pfam_Znf_DHHC_palmitoyltrfase,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC13	HGNC	ENSG00000177054				39	0	0	38	10	20.8333
MUC15	0	genome.wustl.edu	37	11	26587427	26587427	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	26587427	26587427	T	-	DEL	MUC15	ENST00000436318	human	ensembl	74_37	-1	known	frame_shift_del	c.60	p.K20fs	0.000	NULL	NULL	-	no_errors	MUC15	HGNC	ENSG00000169550				51	0	0	47	8	14.5455
HIPK3	0	genome.wustl.edu	37	11	33358692	33358693	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	33358692	33358693	-	T	INS	HIPK3	ENST00000303296	human	ensembl	74_37	+1	known	frame_shift_ins	c.1293_1294	p.C433fs	1.000:1.000	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	HIPK3	HGNC	ENSG00000110422				53	0	0	42	9	17.6471
PAMR1	0	genome.wustl.edu	37	11	35513670	35513670	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	35513670	35513670	C	-	DEL	PAMR1	ENST00000278360	human	ensembl	74_37	-1	known	frame_shift_del	c.302	p.G101fs	0.999	smart_EG-like_dom	pfam_Peptidase_S1,pfam_CUB_dom,pfam_Sushi_SCR_CCP,pfam_EG-like_dom,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_EG-like_dom,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_Sushi_SCR_CCP,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_CUB_dom,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1	-	no_errors	PAMR1	HGNC	ENSG00000149090				379	0	0	314	46	12.7778
FNBP4	0	genome.wustl.edu	37	11	47744543	47744543	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	47744543	47744543	T	-	DEL	FNBP4	ENST00000263773	human	ensembl	74_37	-1	known	frame_shift_del	c.2790	p.G931fs	1.000	NULL	pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	FNBP4	HGNC	ENSG00000109920				11	0	0	10	5	33.3333
OR52A5	0	genome.wustl.edu	37	11	5153679	5153679	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	5153679	5153679	A	-	DEL	OR52A5	ENST00000307388	human	ensembl	74_37	-1	known	frame_shift_del	c.194	p.L65fs	0.870	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52A5	HGNC	ENSG00000171944				92	0	0	99	9	8.33333
TRIM51	0	genome.wustl.edu	37	11	55653610	55653611	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	55653610	55653611	AA	-	DEL	TRIM51	ENST00000449290	human	ensembl	74_37	+1	known	frame_shift_del	c.423_424	p.K143fs	0.001:0.003	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM51	HGNC	ENSG00000124900				53	0	0	41	13	24.0741
OR10AG1	0	genome.wustl.edu	37	11	55735780	55735781	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	55735780	55735781	-	A	INS	OR10AG1	ENST00000312345	human	ensembl	74_37	-1	known	frame_shift_ins	c.160_159	p.L53fs	0.976:0.945	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10AG1	HGNC	ENSG00000174970				98	0	0	95	8	7.76699
OR5M3	0	genome.wustl.edu	37	11	56237709	56237709	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	56237709	56237709	T	-	DEL	OR5M3	ENST00000312240	human	ensembl	74_37	-1	known	frame_shift_del	c.265	p.T89fs	0.002	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5M3	HGNC	ENSG00000174937				148	0	0	121	16	11.6788
TNKS1BP1	0	genome.wustl.edu	37	11	57077118	57077119	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	57077118	57077119	CT	-	DEL	TNKS1BP1	ENST00000358252	human	ensembl	74_37	-1	known	frame_shift_del	c.3067_3066	p.G1023fs	0.000:0.000	NULL	NULL	-	no_errors	TNKS1BP1	HGNC	ENSG00000149115				59	0	0	53	5	8.62069
OR4D9	0	genome.wustl.edu	37	11	59282835	59282835	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	59282835	59282835	G	-	DEL	OR4D9	ENST00000329328	human	ensembl	74_37	+1	known	frame_shift_del	c.450	p.G152fs	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4D9	HGNC	ENSG00000172742				76	0	0	85	9	9.57447
CDHR5	0	genome.wustl.edu	37	11	617603	617603	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	617603	617603	G	-	DEL	CDHR5	ENST00000358353	human	ensembl	74_37	-1	known	frame_shift_del	c.2286	p.A763fs	0.000	NULL	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	-	no_errors	CDHR5	HGNC	ENSG00000099834				11	0	0	8	2	20
RTN3	0	genome.wustl.edu	37	11	63488463	63488464	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	63488463	63488464	-	A	INS	RTN3	ENST00000377819	human	ensembl	74_37	+1	known	frame_shift_ins	c.2489_2490	p.H833fs	0.897:0.925	NULL	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN3	HGNC	ENSG00000133318				121	0	0	99	19	16.1017
RTN3	0	genome.wustl.edu	37	11	63525788	63525788	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	63525788	63525788	T	-	DEL	RTN3	ENST00000354497	human	ensembl	74_37	+1	putative	frame_shift_del	c.570	p.L193fs	0.998	NULL	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN3	HGNC	ENSG00000133318				52	0	0	70	14	16.6667
VEGFB	0	genome.wustl.edu	37	11	64004663	64004663	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	64004663	64004663	A	-	DEL	VEGFB	ENST00000309422	human	ensembl	74_37	+1	known	frame_shift_del	c.379	p.K129fs	1.000	pfscan_PDGF/VEGF_dom	pfam_PDGF/VEGF_dom,smart_PDGF/VEGF_dom,pfscan_PDGF/VEGF_dom	-	no_errors	VEGFB	HGNC	ENSG00000173511				141	0	0	100	20	16.6667
C11orf68	0	genome.wustl.edu	37	11	65684985	65684985	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	65684985	65684985	C	-	DEL	C11orf68	ENST00000438576	human	ensembl	74_37	-1	known	frame_shift_del	c.827	p.G276fs	0.996	superfamily_TIF_eIF4e-like_dom	pfam_DUF1917,superfamily_TIF_eIF4e-like_dom	-	no_errors	C11orf68	HGNC	ENSG00000175573				65	0	0	50	7	12.2807
SUV420H1	0	genome.wustl.edu	37	11	67925937	67925937	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	67925937	67925937	T	-	DEL	SUV420H1	ENST00000304363	human	ensembl	74_37	-1	known	frame_shift_del	c.1876	p.I626fs	0.000	NULL	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	-	no_errors	SUV420H1	HGNC	ENSG00000110066				44	0	0	36	8	18.1818
CPT1A	0	genome.wustl.edu	37	11	68582821	68582821	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	68582821	68582821	T	-	DEL	CPT1A	ENST00000265641	human	ensembl	74_37	-1	known	frame_shift_del	c.122	p.K41fs	1.000	NULL	pfam_Carn_acyl_trans	-	no_errors	CPT1A	HGNC	ENSG00000110090				67	0	0	44	9	16.9811
INPPL1	0	genome.wustl.edu	37	11	71948748	71948748	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	71948748	71948748	C	-	DEL	INPPL1	ENST00000298229	human	ensembl	74_37	+1	known	frame_shift_del	c.3460	p.R1156fs	0.962	NULL	pfam_Endo/exonuclease/phosphatase,pfam_SH2,pfam_SAM_2,pfam_SAM_type1,superfamily_Endo/exonuclease/phosphatase,superfamily_SAM/pointed,smart_SH2,smart_IPPc,smart_SAM,pfscan_SAM,pfscan_SH2,prints_SH2	-	no_errors	INPPL1	HGNC	ENSG00000165458				18	0	0	4	2	33.3333
C2CD3	0	genome.wustl.edu	37	11	73789381	73789381	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	73789381	73789381	T	-	DEL	C2CD3	ENST00000334126	human	ensembl	74_37	-1	known	frame_shift_del	c.4382	p.K1461fs	0.972	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom	-	no_errors	C2CD3	HGNC	ENSG00000168014				87	0	0	56	15	21.1268
GDPD5	0	genome.wustl.edu	37	11	75152219	75152219	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	75152219	75152219	G	-	DEL	GDPD5	ENST00000336898	human	ensembl	74_37	-1	known	frame_shift_del	c.1462	p.L488fs	0.946	NULL	pfam_GlyceroP-diester-Pdiesterase,superfamily_PLC-like_Pdiesterase_TIM-brl	-	no_errors	GDPD5	HGNC	ENSG00000158555				25	0	0	18	8	30.7692
ALG8	0	genome.wustl.edu	37	11	77835228	77835229	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	77835228	77835229	-	G	INS	ALG8	ENST00000299626	human	ensembl	74_37	-1	known	frame_shift_ins	c.207_206	p.F71fs	0.008:0.999	pfam_Glyco_trans_ALG6/ALG8	pfam_Glyco_trans_ALG6/ALG8	-	no_errors	ALG8	HGNC	ENSG00000159063				166	0	0	107	14	11.5702
PCF11	0	genome.wustl.edu	37	11	82877219	82877219	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	82877219	82877219	A	-	DEL	PCF11	ENST00000298281	human	ensembl	74_37	+1	known	frame_shift_del	c.1280	p.K429fs	1.000	NULL	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,smart_CID_dom	-	no_errors	PCF11	HGNC	ENSG00000165494				60	0	0	57	7	10.9375
CTSC	0	genome.wustl.edu	37	11	88068108	88068108	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	88068108	88068108	A	-	DEL	CTSC	ENST00000227266	human	ensembl	74_37	-1	known	frame_shift_del	c.315	p.F105fs	1.000	pfam_CathepsinC_exc	pfam_Peptidase_C1A_C,pfam_CathepsinC_exc,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSC	HGNC	ENSG00000109861				64	0	0	60	16	21.0526
TMEM41B	0	genome.wustl.edu	37	11	9304992	9304992	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	9304992	9304992	T	-	DEL	TMEM41B	ENST00000299596	human	ensembl	74_37	-1	known	frame_shift_del	c.855	p.K285fs	1.000	NULL	pfam_SNARE_assoc	-	no_errors	TMEM41B	HGNC	ENSG00000166471				77	0	0	58	8	12.1212
SCARNA9	0	genome.wustl.edu	37	11	93454921	93454921	+	RNA	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	93454921	93454921	G	-	DEL	SCARNA9	ENST00000530422	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.011	-	-	-	no_errors	SCARNA9	HGNC	ENSG00000254911				43	0	0	30	10	25
KDM4D	0	genome.wustl.edu	37	11	94730807	94730807	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	94730807	94730807	A	-	DEL	KDM4D	ENST00000335080	human	ensembl	74_37	+1	known	frame_shift_del	c.271	p.K93fs	0.600	NULL	pfam_JmjC_dom,pfam_TF_JmjN,smart_TF_JmjN,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4D	HGNC	ENSG00000186280				101	0	0	70	14	16.6667
AP2A2	0	genome.wustl.edu	37	11	970195	970195	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	11	970195	970195	A	-	DEL	AP2A2	ENST00000332231	human	ensembl	74_37	+1	known	frame_shift_del	c.163	p.K57fs	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP2_complex_asu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a-adaptin_app_sub_C,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP2_complex_asu	-	no_errors	AP2A2	HGNC	ENSG00000183020				139	0	0	128	22	14.6667
GNPTAB	0	genome.wustl.edu	37	12	102158002	102158002	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	102158002	102158002	T	-	DEL	GNPTAB	ENST00000299314	human	ensembl	74_37	-1	known	frame_shift_del	c.2693	p.K898fs	1.000	NULL	pfam_DMAP1-bd,pfam_Notch_dom,pfam_DUF3184,superfamily_Notch_dom,smart_Notch_dom,pfscan_EF_hand_dom,pfscan_Notch_dom	-	no_errors	GNPTAB	HGNC	ENSG00000111670				181	0	0	153	27	15
C12orf45	0	genome.wustl.edu	37	12	105388460	105388460	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	105388460	105388460	A	-	DEL	C12orf45	ENST00000552951	human	ensembl	74_37	+1	known	frame_shift_del	c.544	p.K184fs	0.950	NULL	NULL	-	no_errors	C12orf45	HGNC	ENSG00000151131				45	0	0	47	9	16.0714
STYK1	0	genome.wustl.edu	37	12	10772835	10772836	+	Frame_Shift_Del	DEL	AC	AC	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	10772835	10772836	AC	-	DEL	STYK1	ENST00000075503	human	ensembl	74_37	-1	known	frame_shift_del	c.1177_1176	p.L393fs	0.962:0.956	superfamily_Kinase-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	STYK1	HGNC	ENSG00000060140				204	0	0	160	21	11.6022
WSCD2	0	genome.wustl.edu	37	12	108634217	108634217	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	108634217	108634217	C	-	DEL	WSCD2	ENST00000261400	human	ensembl	74_37	+1	known	frame_shift_del	c.1241	p.I415fs	1.000	superfamily_P-loop_NTPase	pfam_WSC_carb-bd,superfamily_P-loop_NTPase,smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd	-	no_errors	WSCD2	HGNC	ENSG00000075035				120	0	0	94	9	8.73786
ACAD10	0	genome.wustl.edu	37	12	112184008	112184008	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	112184008	112184008	A	-	DEL	ACAD10	ENST00000455480	human	ensembl	74_37	+1	known	frame_shift_del	c.2269	p.K758fs	0.986	pfam_AcylCoA_DH/ox_N,superfamily_AcylCoA_DH/oxidase_NM_dom	pfam_Aminoglycoside_PTrfase,pfam_AcylCo_DH/oxidase_C,pfam_Acyl-CoA_DH_2_C,pfam_AcylCoA_DH/ox_N,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_HAD-like_dom,superfamily_AcylCoA_DH/oxidase_NM_dom,superfamily_Kinase-like_dom,superfamily_AcylCo_DH/oxidase_C,superfamily_HAD-like_dom,prints_HAD-SF_hydro_IA,tigrfam_HAD-SF_ppase_IA/epoxid_hydro_N,tigrfam_HAD-SF_hydro_IA	-	no_errors	ACAD10	HGNC	ENSG00000111271				112	0	0	100	16	13.7931
FBXO21	0	genome.wustl.edu	37	12	117624320	117624320	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	117624320	117624320	A	-	DEL	FBXO21	ENST00000330622	human	ensembl	74_37	-1	known	frame_shift_del	c.432	p.F144fs	1.000	superfamily_F-box_dom	pfam_Hemimethylated_DNA-bd_dom,superfamily_Hemimethylated_DNA-bd_dom,superfamily_F-box_dom,tigrfam_Hemimethylated_DNA-bd_dom	-	no_errors	FBXO21	HGNC	ENSG00000135108				111	0	0	73	7	8.75
POP5	0	genome.wustl.edu	37	12	121017154	121017156	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	121017154	121017156	CTC	-	DEL	POP5	ENST00000357500	human	ensembl	74_37	-1	known	in_frame_del	c.459_457	p.E153in_frame_del	0.998:0.998:0.993	pirsf_RNase_P/MRP_POP5	pfam_RNase_P/MRP_subunit,pirsf_RNase_P/MRP_POP5	-	no_errors	POP5	HGNC	ENSG00000167272				117	0	0	107	10	8.54701
CCDC62	0	genome.wustl.edu	37	12	123307941	123307941	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	123307941	123307941	A	-	DEL	CCDC62	ENST00000253079	human	ensembl	74_37	+1	known	frame_shift_del	c.2030	p.N679fs	0.001	NULL	superfamily_Prefoldin	-	no_errors	CCDC62	HGNC	ENSG00000130783				112	0	0	96	15	13.5135
DNAH10	0	genome.wustl.edu	37	12	124257468	124257468	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	124257468	124257468	T	-	DEL	DNAH10	ENST00000409039	human	ensembl	74_37	+1	known	frame_shift_del	c.301	p.F102fs	0.917	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_PyrdxlP-dep_Trfase,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653				102	0	0	116	24	17.1429
KLHL42	0	genome.wustl.edu	37	12	27950769	27950769	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	27950769	27950769	G	-	DEL	KLHL42	ENST00000381271	human	ensembl	74_37	+1	known	frame_shift_del	c.1188	p.C399fs	0.988	NULL	pfam_Kelch_1,pfam_BACK,superfamily_BTB/POZ_fold,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KLHL42	HGNC	ENSG00000087448				127	0	0	121	11	8.33333
TMEM117	0	genome.wustl.edu	37	12	44605117	44605117	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	44605117	44605117	A	-	DEL	TMEM117	ENST00000266534	human	ensembl	74_37	+1	known	frame_shift_del	c.555	p.K186fs	0.997	NULL	NULL	-	no_errors	TMEM117	HGNC	ENSG00000139173				126	0	0	110	23	17.2932
AMIGO2	0	genome.wustl.edu	37	12	47472384	47472385	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	47472384	47472385	-	T	INS	AMIGO2	ENST00000266581	human	ensembl	74_37	-1	known	frame_shift_ins	c.402_401	p.N134fs	0.676:0.744	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	AMIGO2	HGNC	ENSG00000139211				113	0	0	102	21	17.0732
FAM186B	0	genome.wustl.edu	37	12	49993443	49993445	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	49993443	49993445	CTT	-	DEL	FAM186B	ENST00000257894	human	ensembl	74_37	-1	known	in_frame_del	c.1980_1978	p.K660in_frame_del	0.005:0.031:0.034	NULL	NULL	-	no_errors	FAM186B	HGNC	ENSG00000135436				59	0	0	50	8	13.7931
PRPF40B	0	genome.wustl.edu	37	12	50025229	50025229	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	50025229	50025229	C	-	DEL	PRPF40B	ENST00000548825	human	ensembl	74_37	+1	known	frame_shift_del	c.130	p.M46fs	1.000	NULL	pfam_FF_domain,pfam_WW_dom,superfamily_FF_domain,superfamily_WW_dom,smart_WW_dom,smart_FF_domain,pfscan_WW_dom	-	no_errors	PRPF40B	HGNC	ENSG00000110844				109	0	0	65	7	9.72222
NCKAP5L	0	genome.wustl.edu	37	12	50197796	50197796	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	50197796	50197796	C	-	DEL	NCKAP5L	ENST00000335999	human	ensembl	74_37	-1	known	frame_shift_del	c.32	p.G11fs	0.001	NULL	NULL	-	no_errors	NCKAP5L	HGNC	ENSG00000167566				85	0	0	65	5	7.14286
OR6C75	0	genome.wustl.edu	37	12	55759191	55759192	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	55759191	55759192	-	T	INS	OR6C75	ENST00000343399	human	ensembl	74_37	+1	known	frame_shift_ins	c.297_298	p.I102fs	0.002:0.964	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6C75	HGNC	ENSG00000187857				98	0	0	95	16	14.4144
DGKA	0	genome.wustl.edu	37	12	56347514	56347514	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	56347514	56347514	C	-	DEL	DGKA	ENST00000331886	human	ensembl	74_37	+1	known	frame_shift_del	c.2170	p.R726fs	0.749	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_EF_hand_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_EF_hand_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKA	HGNC	ENSG00000065357				74	0	0	68	6	8.10811
SHMT2	0	genome.wustl.edu	37	12	57627077	57627077	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	57627077	57627077	G	-	DEL	SHMT2	ENST00000328923	human	ensembl	74_37	+1	known	frame_shift_del	c.972	p.G326fs	1.000	pfam_Ser_HO-MeTrfase,superfamily_PyrdxlP-dep_Trfase,pirsf_Ser_HO-MeTrfase	pfam_Ser_HO-MeTrfase,superfamily_PyrdxlP-dep_Trfase,pirsf_Ser_HO-MeTrfase	-	no_errors	SHMT2	HGNC	ENSG00000182199				47	0	0	41	8	16.3265
MBD6	0	genome.wustl.edu	37	12	57921401	57921401	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	57921401	57921401	C	-	DEL	MBD6	ENST00000355673	human	ensembl	74_37	+1	known	frame_shift_del	c.2194	p.Q734fs	1.000	NULL	superfamily_DNA-bd_dom,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MBD6	HGNC	ENSG00000166987				115	0	0	79	15	15.9574
DTX3	0	genome.wustl.edu	37	12	58000970	58000970	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	58000970	58000970	G	-	DEL	DTX3	ENST00000551632	human	ensembl	74_37	+1	known	frame_shift_del	c.333	p.G113fs	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	DTX3	HGNC	ENSG00000178498				29	0	0	29	4	12.1212
VWF	0	genome.wustl.edu	37	12	6153463	6153464	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	6153463	6153464	-	G	INS	VWF	ENST00000261405	human	ensembl	74_37	-1	known	frame_shift_ins	c.2436_2435	p.M814fs	0.620:0.703	pirsf_VWF,pfam_TIL_dom,superfamily_TIL_dom	pirsf_VWF,pfam_VWF_type-D,pfam_VWF_A,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_VWF_A,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_A,pfscan_VWF_C	-	no_errors	VWF	HGNC	ENSG00000110799				34	0	0	25	5	16.6667
TMEM19	0	genome.wustl.edu	37	12	72094768	72094768	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	72094768	72094768	G	-	DEL	TMEM19	ENST00000266673	human	ensembl	74_37	+1	known	frame_shift_del	c.1004	p.*337fs	0.149	NULL	pfam_DUF92_TMEM19	-	no_errors	TMEM19	HGNC	ENSG00000139291				232	0	0	170	29	14.5729
GLIPR1L2	0	genome.wustl.edu	37	12	75804255	75804255	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	75804255	75804255	A	-	DEL	GLIPR1L2	ENST00000550916	human	ensembl	74_37	+1	known	frame_shift_del	c.276	p.K94fs	0.726	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1	-	no_errors	GLIPR1L2	HGNC	ENSG00000180481				113	0	0	94	10	9.61538
VEZT	0	genome.wustl.edu	37	12	95650969	95650969	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	12	95650969	95650969	T	-	DEL	VEZT	ENST00000436874	human	ensembl	74_37	+1	known	frame_shift_del	c.212	p.S74fs	0.065	NULL	NULL	-	no_errors	VEZT	HGNC	ENSG00000028203				19	0	0	30	5	14.2857
TUBA3C	0	genome.wustl.edu	37	13	19752522	19752522	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	13	19752522	19752522	G	-	DEL	TUBA3C	ENST00000400113	human	ensembl	74_37	-1	known	frame_shift_del	c.239	p.T80fs	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Epsilon_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Beta_tubulin	-	no_errors	TUBA3C	HGNC	ENSG00000198033				92	0	0	66	7	9.58904
MPHOSPH8	0	genome.wustl.edu	37	13	20220968	20220969	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	13	20220968	20220969	-	A	INS	MPHOSPH8	ENST00000414242	human	ensembl	74_37	+1	known	frame_shift_ins	c.755_756	p.E255fs	0.996:0.996	NULL	pfam_Ankyrin_rpt,pfam_Chromo_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Chromo_domain/shadow	-	no_errors	MPHOSPH8	HGNC	ENSG00000196199				109	0	0	92	17	15.5963
SACS	0	genome.wustl.edu	37	13	23909127	23909127	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	13	23909127	23909127	A	-	DEL	SACS	ENST00000382292	human	ensembl	74_37	-1	known	frame_shift_del	c.8888	p.F2963fs	1.000	NULL	pfam_HEPN,pfam_Ubiquitin_dom,superfamily_HATPase_ATP-bd,superfamily_DnaJ_domain,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_domain,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835				126	0	0	130	17	11.5646
ATP12A	0	genome.wustl.edu	37	13	25262563	25262564	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	13	25262563	25262564	-	G	INS	ATP12A	ENST00000218548	human	ensembl	74_37	+1	known	frame_shift_ins	c.335_336	p.F115fs	1.000:1.000	pfam_ATPase_P-typ_cation-transptr_N,smart_ATPase_P-typ_cation-transptr_N,tigrfam_ATPase_P-typ_Na/K_IIC	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP12A	HGNC	ENSG00000075673				303	0	0	256	15	5.53506
PDS5B	0	genome.wustl.edu	37	13	33344888	33344888	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	13	33344888	33344888	A	-	DEL	PDS5B	ENST00000315596	human	ensembl	74_37	+1	known	frame_shift_del	c.4161	p.N1390fs	0.002	NULL	superfamily_ARM-type_fold	-	no_errors	PDS5B	HGNC	ENSG00000083642				49	0	0	40	9	18.3673
EXOSC8	0	genome.wustl.edu	37	13	37581201	37581201	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	13	37581201	37581201	A	-	DEL	EXOSC8	ENST00000389704	human	ensembl	74_37	+1	known	frame_shift_del	c.480	p.N162fs	1.000	pfam_ExoRNase_PH_dom1,superfamily_Ribosomal_S5_D2-typ_fold	pfam_ExoRNase_PH_dom1,pfam_ExoRNase_PH_dom2,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ExoRNase_PH_dom2	-	no_errors	EXOSC8	HGNC	ENSG00000120699				54	0	0	42	7	14.2857
MRPS31	0	genome.wustl.edu	37	13	41341161	41341161	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	13	41341161	41341161	T	-	DEL	MRPS31	ENST00000323563	human	ensembl	74_37	-1	known	frame_shift_del	c.161	p.N54fs	0.484	NULL	NULL	-	no_errors	MRPS31	HGNC	ENSG00000102738				44	0	0	40	6	13.0435
SUCLA2	0	genome.wustl.edu	37	13	48570982	48570982	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	13	48570982	48570982	T	-	DEL	SUCLA2	ENST00000378654	human	ensembl	74_37	-1	known	frame_shift_del	c.267	p.K89fs	1.000	pfam_ATP-grasp_succ-CoA_synth-type,tigrfam_Succ_CoA_synthase_bsu	pfam_ATP-grasp_succ-CoA_synth-type,pfam_CoA_ligase,superfamily_Succinyl-CoA_synth-like,tigrfam_Succ_CoA_synthase_bsu	-	no_errors	SUCLA2	HGNC	ENSG00000136143				68	0	0	45	13	22.4138
SETDB2	0	genome.wustl.edu	37	13	50065970	50065970	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	13	50065970	50065970	A	-	DEL	SETDB2	ENST00000317257	human	ensembl	74_37	+1	known	frame_shift_del	c.2145	p.I718fs	0.859	NULL	pfam_SET_dom,pfam_Pre-SET_dom,pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_dom,smart_Methyl_CpG_DNA-bd,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Methyl_CpG_DNA-bd,pfscan_SET_dom,pfscan_Pre-SET_dom	-	no_errors	SETDB2	HGNC	ENSG00000136169				57	0	0	66	15	18.5185
POU4F1	0	genome.wustl.edu	37	13	79175623	79175623	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	13	79175623	79175623	T	-	DEL	POU4F1	ENST00000377208	human	ensembl	74_37	-1	known	frame_shift_del	c.1187	p.K396fs	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_POU	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU	-	no_errors	POU4F1	HGNC	ENSG00000152192				84	0	0	73	9	10.9756
PTMAP5	0	genome.wustl.edu	37	13	82265134	82265134	+	RNA	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	13	82265134	82265134	T	-	DEL	PTMAP5	ENST00000607242	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	PTMAP5	HGNC	ENSG00000214182				40	0	0	34	8	19.0476
SLITRK1	0	genome.wustl.edu	37	13	84455509	84455509	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	13	84455509	84455509	T	-	DEL	SLITRK1	ENST00000377084	human	ensembl	74_37	-1	known	frame_shift_del	c.134	p.K45fs	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK1	HGNC	ENSG00000178235				104	0	0	90	10	10
DLK1	0	genome.wustl.edu	37	14	101200555	101200555	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	101200555	101200555	C	-	DEL	DLK1	ENST00000341267	human	ensembl	74_37	+1	known	frame_shift_del	c.474	p.P160fs	1.000	pfam_EG-like_dom,pfam_EGF_extracell,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	pfam_EG-like_dom,pfam_EGF_extracell,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	DLK1	HGNC	ENSG00000185559				69	0	0	51	7	12.069
MIR543	0	genome.wustl.edu	37	14	101498347	101498347	+	RNA	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	101498347	101498347	T	-	DEL	MIR543	ENST00000390751	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.956	-	-	-	no_errors	MIR543	HGNC	ENSG00000212040				63	0	0	52	15	22.3881
BRF1	0	genome.wustl.edu	37	14	105692604	105692604	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	105692604	105692604	T	-	DEL	BRF1	ENST00000546474	human	ensembl	74_37	-1	known	frame_shift_del	c.939	p.K313fs	0.244	NULL	pfam_TFIIB_cyclin,pfam_BRF1_TBP-bd,pfam_Znf_TFIIB,superfamily_Cyclin-like,smart_Cyclin-like,pfscan_Znf_TFIIB,prints_TFIIB	-	no_errors	BRF1	HGNC	ENSG00000185024				124	0	0	134	11	7.58621
BRF1	0	genome.wustl.edu	37	14	105693010	105693010	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	105693010	105693010	G	-	DEL	BRF1	ENST00000546474	human	ensembl	74_37	-1	known	frame_shift_del	c.876	p.S293fs	0.896	NULL	pfam_TFIIB_cyclin,pfam_BRF1_TBP-bd,pfam_Znf_TFIIB,superfamily_Cyclin-like,smart_Cyclin-like,pfscan_Znf_TFIIB,prints_TFIIB	-	no_errors	BRF1	HGNC	ENSG00000185024				62	0	0	53	6	10.1695
RNU6-458P	0	genome.wustl.edu	37	14	19119596	19119596	+	RNA	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	19119596	19119596	A	-	DEL	RNU6-458P	ENST00000384179	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	RNU6-458P	HGNC	ENSG00000206906				8	0	0	4	3	42.8571
TOX4	0	genome.wustl.edu	37	14	21955823	21955823	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	21955823	21955823	G	-	DEL	TOX4	ENST00000262709	human	ensembl	74_37	+1	known	frame_shift_del	c.289	p.L99fs	1.000	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	TOX4	HGNC	ENSG00000092203				72	0	0	61	5	7.57576
RBM23	0	genome.wustl.edu	37	14	23371030	23371030	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	23371030	23371030	G	-	DEL	RBM23	ENST00000359890	human	ensembl	74_37	-1	known	frame_shift_del	c.1309	p.Q437fs	1.000	tigrfam_CC1_SF	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_CC1_SF	-	no_errors	RBM23	HGNC	ENSG00000100461				215	0	0	163	25	13.2979
NYNRIN	0	genome.wustl.edu	37	14	24879247	24879247	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	24879247	24879247	G	-	DEL	NYNRIN	ENST00000382554	human	ensembl	74_37	+1	known	frame_shift_del	c.2247	p.A751fs	0.035	NULL	pfam_RNase_Zc3h12,superfamily_RNaseH-like_dom,pfscan_Integrase_cat-core	-	no_errors	NYNRIN	HGNC	ENSG00000205978				30	0	0	23	6	20.6897
RALGAPA1	0	genome.wustl.edu	37	14	36194270	36194270	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	36194270	36194270	T	-	DEL	RALGAPA1	ENST00000258840	human	ensembl	74_37	-1	known	frame_shift_del	c.1826	p.N609fs	0.969	NULL	pfam_Rap_GAP_dom,superfamily_ARM-type_fold,pfscan_Rap_GAP_dom	-	no_errors	RALGAPA1	HGNC	ENSG00000174373				87	0	0	80	13	13.9785
MIPOL1	0	genome.wustl.edu	37	14	37739702	37739703	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	37739702	37739703	AG	-	DEL	MIPOL1	ENST00000327441	human	ensembl	74_37	+1	known	frame_shift_del	c.465_466	p.E156fs	0.999:1.000	NULL	NULL	-	no_errors	MIPOL1	HGNC	ENSG00000151338				44	0	0	67	7	9.45946
FANCM	0	genome.wustl.edu	37	14	45645955	45645955	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	45645955	45645955	A	-	DEL	FANCM	ENST00000267430	human	ensembl	74_37	+1	known	frame_shift_del	c.3998	p.V1336fs	0.008	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Restrct_endonuc-II-like,superfamily_RuvA_2-like,smart_Helicase_ATP-bd,smart_Helicase_C,smart_ERCC4_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	FANCM	HGNC	ENSG00000187790				76	0	0	88	13	12.8713
ATP5S	0	genome.wustl.edu	37	14	50788220	50788220	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	50788220	50788220	A	-	DEL	ATP5S	ENST00000311459	human	ensembl	74_37	+1	known	frame_shift_del	c.60	p.I22fs	1.000	NULL	NULL	-	no_errors	ATP5S	HGNC	ENSG00000125375				63	0	0	71	11	13.4146
C14orf105	0	genome.wustl.edu	37	14	57960374	57960375	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	57960374	57960375	-	T	INS	C14orf105	ENST00000216445	human	ensembl	74_37	-1	known	frame_shift_ins	c.60_59	p.N20fs	0.992:0.989	NULL	NULL	-	no_errors	C14orf105	HGNC	ENSG00000100557				53	0	0	56	6	9.67742
KIAA0586	0	genome.wustl.edu	37	14	59014534	59014534	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	59014534	59014534	C	-	DEL	KIAA0586	ENST00000556134	human	ensembl	74_37	+1	known	frame_shift_del	c.4486	p.P1497fs	0.000	NULL	NULL	-	no_errors	KIAA0586	HGNC	ENSG00000100578				89	0	0	70	11	13.5802
MNAT1	0	genome.wustl.edu	37	14	61201664	61201667	+	Frame_Shift_Del	DEL	CACT	CACT	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	CACT	CACT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	61201664	61201667	CACT	-	DEL	MNAT1	ENST00000261245	human	ensembl	74_37	+1	known	frame_shift_del	c.84_87	p.T29fs	1.000:1.000:1.000:0.996	pirsf_MAT1/Tfb3,smart_Znf_RING,pfscan_Znf_RING,tigrfam_MAT1/Tfb3	pirsf_MAT1/Tfb3,pfam_Cdk-activating_kinase_MAT1_cen,smart_Znf_RING,pfscan_Ubiquitin-int_motif,pfscan_Znf_RING,tigrfam_MAT1/Tfb3	-	no_errors	MNAT1	HGNC	ENSG00000020426				94	0	0	59	7	10.6061
NRDE2	0	genome.wustl.edu	37	14	90759058	90759059	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	90759058	90759059	CA	-	DEL	NRDE2	ENST00000354366	human	ensembl	74_37	-1	known	frame_shift_del	c.1825_1824	p.C608fs	1.000:1.000	NULL	pfam_NRDE-2	-	no_errors	NRDE2	HGNC	ENSG00000119720				153	0	0	85	14	14.1414
GOLGA5	0	genome.wustl.edu	37	14	93273171	93273171	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	93273171	93273171	C	-	DEL	GOLGA5	ENST00000163416	human	ensembl	74_37	+1	known	frame_shift_del	c.635	p.P213fs	0.000	NULL	pfam_Golgin_subfamily_A_member_5,superfamily_Prefoldin	-	no_errors	GOLGA5	HGNC	ENSG00000066455				99	0	0	77	16	17.2043
BTBD7	0	genome.wustl.edu	37	14	93709015	93709015	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	93709015	93709015	T	-	DEL	BTBD7	ENST00000334746	human	ensembl	74_37	-1	known	frame_shift_del	c.3003	p.K1001fs	0.998	NULL	pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD7	HGNC	ENSG00000011114				159	0	0	122	27	18.1208
BTBD7	0	genome.wustl.edu	37	14	93760502	93760502	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	14	93760502	93760502	A	-	DEL	BTBD7	ENST00000334746	human	ensembl	74_37	-1	known	frame_shift_del	c.864	p.R289fs	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD7	HGNC	ENSG00000011114				88	0	0	59	8	11.9403
SNHG14	0	genome.wustl.edu	37	15	25456859	25456859	+	RNA	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	15	25456859	25456859	C	-	DEL	SNHG14	ENST00000424208	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNHG14	HGNC	ENSG00000224078				66	0	0	53	9	14.5161
AVEN	0	genome.wustl.edu	37	15	34159951	34159952	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	15	34159951	34159952	-	C	INS	AVEN	ENST00000306730	human	ensembl	74_37	-1	known	frame_shift_ins	c.718_717	p.P239fs	0.000:0.001	NULL	NULL	-	no_errors	AVEN	HGNC	ENSG00000169857				77	0	0	53	7	11.6667
SPRED1	0	genome.wustl.edu	37	15	38614463	38614463	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	15	38614463	38614463	A	-	DEL	SPRED1	ENST00000299084	human	ensembl	74_37	+1	known	frame_shift_del	c.229	p.D79fs	1.000	pfam_WH1/EVH1,smart_WH1/EVH1,pfscan_WH1/EVH1	pfam_Sprouty,pfam_WH1/EVH1,smart_WH1/EVH1,pfscan_WH1/EVH1	-	no_errors	SPRED1	HGNC	ENSG00000166068				95	0	0	99	11	10
MGA	0	genome.wustl.edu	37	15	42005394	42005395	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	15	42005394	42005395	-	C	INS	MGA	ENST00000219905	human	ensembl	74_37	+1	known	frame_shift_ins	c.3130_3131	p.P1046fs	1.000:0.996	NULL	pfam_TF_T-box,pfam_bHLH_dom,superfamily_p53-like_TF_DNA-bd,superfamily_bHLH_dom,smart_TF_T-box,smart_bHLH_dom,pfscan_bHLH_dom,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	MGA	HGNC	ENSG00000174197				210	0	0	160	13	7.51445
TEX9	0	genome.wustl.edu	37	15	56719824	56719824	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	15	56719824	56719824	A	-	DEL	TEX9	ENST00000352903	human	ensembl	74_37	+1	known	frame_shift_del	c.985	p.I331fs	0.358	NULL	NULL	-	no_errors	TEX9	HGNC	ENSG00000151575				43	0	0	43	7	14
NARG2	0	genome.wustl.edu	37	15	60745782	60745782	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	15	60745782	60745782	A	-	DEL	NARG2	ENST00000561114	human	ensembl	74_37	-1	putative	frame_shift_del	c.1145	p.F382fs	0.000	NULL	NULL	-	no_errors	NARG2	HGNC	ENSG00000128915				63	0	0	39	8	17.0213
VPS13C	0	genome.wustl.edu	37	15	62182513	62182514	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	15	62182513	62182514	-	A	INS	VPS13C	ENST00000261517	human	ensembl	74_37	-1	known	frame_shift_ins	c.9192_9191	p.T3065fs	1.000:1.000	NULL	pfam_VPSAP_dom,pfam_Autophagy-rel_C	-	no_errors	VPS13C	HGNC	ENSG00000129003				63	0	0	67	9	11.8421
FBXL22	0	genome.wustl.edu	37	15	63889654	63889656	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	15	63889654	63889656	CTC	-	DEL	FBXL22	ENST00000360587	human	ensembl	74_37	+1	known	in_frame_del	c.63_65	p.S22in_frame_del	1.000:1.000:1.000	superfamily_F-box_dom	superfamily_F-box_dom	-	no_errors	FBXL22	HGNC	ENSG00000197361				47	0	0	35	8	18.6047
HERC1	0	genome.wustl.edu	37	15	64005567	64005567	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	15	64005567	64005567	C	-	DEL	HERC1	ENST00000443617	human	ensembl	74_37	-1	known	frame_shift_del	c.4448	p.G1483fs	0.014	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657				64	0	0	50	7	12.2807
SCAPER	0	genome.wustl.edu	37	15	76726491	76726492	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	15	76726491	76726492	-	T	INS	SCAPER	ENST00000324767	human	ensembl	74_37	-1	known	frame_shift_ins	c.3239_3238	p.I1080fs	0.986:1.000	NULL	smart_Znf_U1	-	no_errors	SCAPER	HGNC	ENSG00000140386				117	0	0	85	20	19.0476
CLEC16A	0	genome.wustl.edu	37	16	11137920	11137920	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	11137920	11137920	T	-	DEL	CLEC16A	ENST00000409790	human	ensembl	74_37	+1	known	frame_shift_del	c.1806	p.Y604fs	0.966	NULL	pfam_Uncharacterised_FPL	-	no_errors	CLEC16A	HGNC	ENSG00000038532				71	0	0	72	11	13.253
NTAN1	0	genome.wustl.edu	37	16	15131990	15131990	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	15131990	15131990	T	-	DEL	NTAN1	ENST00000287706	human	ensembl	74_37	-1	known	frame_shift_del	c.831	p.K277fs	0.819	NULL	NULL	-	no_errors	NTAN1	HGNC	ENSG00000157045				83	0	0	68	15	18.0723
EME2	0	genome.wustl.edu	37	16	1825707	1825707	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	1825707	1825707	G	-	DEL	EME2	ENST00000307394	human	ensembl	74_37	+1	known	frame_shift_del	c.954	p.G320fs	0.005	pfam_ERCC4_domain,smart_ERCC4_domain	pfam_ERCC4_domain,smart_ERCC4_domain	-	no_errors	EME2	HGNC	ENSG00000197774				81	0	0	39	8	17.0213
LOC81691	0	genome.wustl.edu	37	16	20844362	20844363	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	20844362	20844363	-	T	INS	LOC81691	ENST00000261377	human	ensembl	74_37	+1	known	frame_shift_ins	c.1300_1301	p.L436fs	0.994:0.996	NULL	pfam_Exonuclease_RNaseT/DNA_pol3,pfam_RRM_dom,superfamily_RNaseH-like_dom,smart_Exonuclease,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	AC004381.6	Clone_based_vega_gene	ENSG00000005189				98	0	0	76	6	7.31707
IL4R	0	genome.wustl.edu	37	16	27367135	27367135	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	27367135	27367135	G	-	DEL	IL4R	ENST00000170630	human	ensembl	74_37	+1	known	frame_shift_del	c.677	p.E227fs	0.002	NULL	pfam_IL-4_rcpt-alpha_N,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL4R	HGNC	ENSG00000077238				54	0	0	44	7	13.7255
GTF3C1	0	genome.wustl.edu	37	16	27489822	27489822	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	27489822	27489822	T	-	DEL	GTF3C1	ENST00000356183	human	ensembl	74_37	-1	known	frame_shift_del	c.4227	p.D1410fs	0.975	NULL	pfam_TFIIIC_Bblock-bd	-	no_errors	GTF3C1	HGNC	ENSG00000077235				112	0	0	91	23	20.1754
HCFC1R1	0	genome.wustl.edu	37	16	3073266	3073266	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	3073266	3073266	G	-	DEL	HCFC1R1	ENST00000248089	human	ensembl	74_37	-1	known	frame_shift_del	c.249	p.M84fs	0.001	NULL	NULL	-	no_errors	HCFC1R1	HGNC	ENSG00000103145				67	0	0	35	11	23.913
ZNF500	0	genome.wustl.edu	37	16	4802776	4802777	+	Frame_Shift_Ins	INS	-	-	GT			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	4802776	4802777	-	GT	INS	ZNF500	ENST00000219478	human	ensembl	74_37	-1	known	frame_shift_ins	c.1044_1043	p.G349fs	0.000:0.974	pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF500	HGNC	ENSG00000103199				84	0	0	61	14	18.6667
ENSG00000238645	0	genome.wustl.edu	37	16	53368533	53368533	+	RNA	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	53368533	53368533	C	-	DEL	ENSG00000238645	ENST00000459097	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors	snoU13	RFAM	ENSG00000238645				20	0	0	27	6	18.1818
CDH8	0	genome.wustl.edu	37	16	61687601	61687601	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	61687601	61687601	G	-	DEL	CDH8	ENST00000577390	human	ensembl	74_37	-1	known	frame_shift_del	c.2311	p.Q771fs	1.000	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH8	HGNC	ENSG00000150394				62	0	0	50	9	15.2542
DPEP3	0	genome.wustl.edu	37	16	68012210	68012210	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	68012210	68012210	C	-	DEL	DPEP3	ENST00000268793	human	ensembl	74_37	-1	known	frame_shift_del	c.721	p.V241fs	1.000	pfam_Peptidase_M19	pfam_Peptidase_M19	-	no_errors	DPEP3	HGNC	ENSG00000141096				127	0	0	97	18	15.6522
WDR90	0	genome.wustl.edu	37	16	709102	709102	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	16	709102	709102	G	-	DEL	WDR90	ENST00000549091	human	ensembl	74_37	+1	novel	frame_shift_del	c.3028	p.A1011fs	0.000	NULL	pfam_WD40_repeat,pfam_DUF667,pfam_Nucleoporin_Nup160,superfamily_Quinonprotein_ADH-like_supfam,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR90	HGNC	ENSG00000161996				44	0	0	26	4	13.3333
DNAH9	0	genome.wustl.edu	37	17	11711080	11711081	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	11711080	11711081	-	G	INS	DNAH9	ENST00000262442	human	ensembl	74_37	+1	known	frame_shift_ins	c.8452_8453	p.N2820fs	0.049:0.995	superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174				85	0	0	84	10	10.6383
SMG6	0	genome.wustl.edu	37	17	2203399	2203399	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	2203399	2203399	T	-	DEL	SMG6	ENST00000263073	human	ensembl	74_37	-1	known	frame_shift_del	c.648	p.G217fs	0.964	NULL	pfam_EST1,smart_PIN_dom	-	no_errors	SMG6	HGNC	ENSG00000070366				178	0	0	166	9	5.14286
NEK8	0	genome.wustl.edu	37	17	27068996	27068996	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	27068996	27068996	C	-	DEL	NEK8	ENST00000268766	human	ensembl	74_37	+1	known	frame_shift_del	c.2070	p.*693fs	0.001	NULL	pfam_Prot_kinase_dom,pfam_Reg_chr_condens,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_RCC1/BLIP-II,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Reg_chr_condens,pfscan_Prot_kinase_dom,prints_Reg_chr_condens,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK8	HGNC	ENSG00000160602				90	0	0	67	8	10.6667
PHF12	0	genome.wustl.edu	37	17	27233908	27233909	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	27233908	27233909	-	G	INS	PHF12	ENST00000332830	human	ensembl	74_37	-1	known	frame_shift_ins	c.2646_2645	p.S883fs	0.990:1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,superfamily_SMAD_FHA_domain,smart_Znf_PHD,pfscan_FHA_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF12	HGNC	ENSG00000109118				104	0	0	68	10	12.8205
RAP1GAP2	0	genome.wustl.edu	37	17	2867323	2867323	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	2867323	2867323	G	-	DEL	RAP1GAP2	ENST00000254695	human	ensembl	74_37	+1	known	frame_shift_del	c.453	p.G152fs	0.926	NULL	pfam_Rap_GAP_dom,pfscan_Rap_GAP_dom	-	no_errors	RAP1GAP2	HGNC	ENSG00000132359				84	0	0	61	8	11.5942
ATAD5	0	genome.wustl.edu	37	17	29196630	29196630	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	29196630	29196630	T	-	DEL	ATAD5	ENST00000321990	human	ensembl	74_37	+1	known	frame_shift_del	c.3573	p.F1193fs	0.733	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	ATAD5	HGNC	ENSG00000176208				120	0	0	96	20	17.2414
MYO19	0	genome.wustl.edu	37	17	34862341	34862341	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	34862341	34862341	G	-	DEL	MYO19	ENST00000431794	human	ensembl	74_37	-1	known	frame_shift_del	c.1751	p.P584fs	0.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO19	HGNC	ENSG00000141140				81	0	0	67	7	9.45946
MSL1	0	genome.wustl.edu	37	17	38282534	38282535	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	38282534	38282535	AG	-	DEL	MSL1	ENST00000398532	human	ensembl	74_37	+1	known	frame_shift_del	c.867_868	p.E292fs	1.000:1.000	NULL	NULL	-	no_errors	MSL1	HGNC	ENSG00000188895				116	0	0	103	16	13.4454
ACLY	0	genome.wustl.edu	37	17	40028081	40028082	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	40028081	40028082	-	C	INS	ACLY	ENST00000352035	human	ensembl	74_37	-1	known	frame_shift_ins	c.2798_2797	p.D933fs	1.000:1.000	pfam_Citrate_synthase-like,superfamily_Citrate_synthase-like_core,pirsf_ATP-citrate_synthase	pfam_Citrate_synthase-like,pfam_CoA_ligase,pfam_CoA-bd,pfam_ATP-grasp_succ-CoA_synth-type,superfamily_Citrate_synthase-like_core,superfamily_Succinyl-CoA_synth-like,smart_CoA-bd,pirsf_ATP-citrate_synthase	-	no_errors	ACLY	HGNC	ENSG00000131473				62	0	0	28	6	17.6471
STAT5B	0	genome.wustl.edu	37	17	40362447	40362447	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	40362447	40362447	T	-	DEL	STAT5B	ENST00000293328	human	ensembl	74_37	-1	known	frame_shift_del	c.1749	p.K583fs	0.969	pfam_STAT_TF_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT5B	HGNC	ENSG00000173757				121	0	0	109	20	15.5039
CYB5D2	0	genome.wustl.edu	37	17	4060253	4060253	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	4060253	4060253	C	-	DEL	CYB5D2	ENST00000301391	human	ensembl	74_37	+1	known	frame_shift_del	c.672	p.P226fs	0.934	NULL	pfam_Cyt_B5-like_heme/steroid-bd,superfamily_Cyt_B5-like_heme/steroid-bd	-	no_errors	CYB5D2	HGNC	ENSG00000167740				44	0	0	32	5	13.5135
NFE2L1	0	genome.wustl.edu	37	17	46135788	46135788	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	46135788	46135788	G	-	DEL	NFE2L1	ENST00000362042	human	ensembl	74_37	+1	known	frame_shift_del	c.1104	p.G370fs	1.000	NULL	pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L1	HGNC	ENSG00000082641				87	0	0	62	8	11.4286
CHAD	0	genome.wustl.edu	37	17	48545752	48545752	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	48545752	48545752	C	-	DEL	CHAD	ENST00000258969	human	ensembl	74_37	-1	known	frame_shift_del	c.423	p.L142fs	0.833	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	CHAD	HGNC	ENSG00000136457				28	0	0	27	4	12.9032
USP6	0	genome.wustl.edu	37	17	5072211	5072211	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	5072211	5072211	G	-	DEL	USP6	ENST00000250066	human	ensembl	74_37	+1	known	frame_shift_del	c.3378	p.D1128fs	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom,pfscan_Peptidase_C19/C67	-	no_errors	USP6	HGNC	ENSG00000129204				165	0	0	146	11	7.00637
ANKFN1	0	genome.wustl.edu	37	17	54428181	54428181	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	54428181	54428181	A	-	DEL	ANKFN1	ENST00000318698	human	ensembl	74_37	+1	known	frame_shift_del	c.252	p.K86fs	0.976	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Fibronectin_type3,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Fibronectin_type3	-	no_errors	ANKFN1	HGNC	ENSG00000153930				117	0	0	106	26	19.697
RNF43	0	genome.wustl.edu	37	17	56435161	56435161	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	56435161	56435161	C	-	DEL	RNF43	ENST00000407977	human	ensembl	74_37	-1	known	frame_shift_del	c.1976	p.G659fs	0.900	NULL	pfam_Znf_C3HC4_RING-type,superfamily_PAS,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF43	HGNC	ENSG00000108375				88	0	0	50	7	12.2807
PRR11	0	genome.wustl.edu	37	17	57247171	57247171	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	57247171	57247171	A	-	DEL	PRR11	ENST00000262293	human	ensembl	74_37	+1	known	frame_shift_del	c.58	p.E23fs	0.749	NULL	NULL	-	no_errors	PRR11	HGNC	ENSG00000068489				74	0	0	81	9	10
VMP1	0	genome.wustl.edu	37	17	57889086	57889087	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	57889086	57889087	-	T	INS	VMP1	ENST00000262291	human	ensembl	74_37	+1	known	frame_shift_ins	c.851_852	p.W286fs	1.000:1.000	NULL	NULL	-	no_errors	VMP1	HGNC	ENSG00000062716				121	0	0	115	15	11.5385
TBX2	0	genome.wustl.edu	37	17	59479234	59479234	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	59479234	59479234	G	-	DEL	TBX2	ENST00000240328	human	ensembl	74_37	+1	novel	frame_shift_del	c.585	p.E197fs	0.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box,prints_TF_Brachyury	-	no_errors	TBX2	HGNC	ENSG00000121068				65	0	0	49	4	7.54717
MAP3K3	0	genome.wustl.edu	37	17	61759155	61759155	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	61759155	61759155	C	-	DEL	MAP3K3	ENST00000361357	human	ensembl	74_37	+1	known	frame_shift_del	c.625	p.P210fs	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_OPR_PB1,superfamily_Kinase-like_dom,smart_OPR_PB1,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP3K3	HGNC	ENSG00000198909				127	0	0	96	10	9.43396
CEP112	0	genome.wustl.edu	37	17	64059082	64059082	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	64059082	64059082	T	-	DEL	CEP112	ENST00000392769	human	ensembl	74_37	-1	known	frame_shift_del	c.1073	p.K358fs	1.000	NULL	superfamily_t-SNARE	-	no_errors	CEP112	HGNC	ENSG00000154240				76	0	0	83	13	13.5417
FXR2	0	genome.wustl.edu	37	17	7496122	7496122	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	7496122	7496122	G	-	DEL	FXR2	ENST00000250113	human	ensembl	74_37	-1	known	frame_shift_del	c.1619	p.P540fs	1.000	NULL	pfam_Frag_X_MRP_fam,pfam_KH_dom_type_1,pfam_Agenet-like_dom,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FXR2	HGNC	ENSG00000129245				27	0	0	17	11	39.2857
EFNB3	0	genome.wustl.edu	37	17	7612532	7612532	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	17	7612532	7612532	C	-	DEL	EFNB3	ENST00000226091	human	ensembl	74_37	+1	known	frame_shift_del	c.661	p.P222fs	1.000	NULL	pfam_Ephrin,superfamily_Cupredoxin,prints_Ephrin	-	no_errors	EFNB3	HGNC	ENSG00000108947				40	0	0	45	5	10
USP14	0	genome.wustl.edu	37	18	203145	203146	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	18	203145	203146	-	T	INS	USP14	ENST00000261601	human	ensembl	74_37	+1	known	frame_shift_ins	c.990_991	p.Y332fs	0.999:1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,smart_Ubiquitin_dom,pfscan_Peptidase_C19/C67,pfscan_Ubiquitin_supergroup	-	no_errors	USP14	HGNC	ENSG00000101557				90	0	0	108	6	5.26316
SMCHD1	0	genome.wustl.edu	37	18	2706440	2706440	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	18	2706440	2706440	A	-	DEL	SMCHD1	ENST00000320876	human	ensembl	74_37	+1	known	frame_shift_del	c.2035	p.K680fs	0.880	NULL	pfam_SMC_hinge,superfamily_SMC_hinge,superfamily_HATPase_ATP-bd,smart_SMC_hinge	-	no_errors	SMCHD1	HGNC	ENSG00000101596				17	0	0	29	6	17.1429
MYOM1	0	genome.wustl.edu	37	18	3142040	3142040	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	18	3142040	3142040	G	-	DEL	MYOM1	ENST00000356443	human	ensembl	74_37	-1	known	frame_shift_del	c.1922	p.P641fs	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYOM1	HGNC	ENSG00000101605				78	0	0	73	8	9.87654
MYOM1	0	genome.wustl.edu	37	18	3154953	3154953	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	18	3154953	3154953	A	-	DEL	MYOM1	ENST00000356443	human	ensembl	74_37	-1	known	frame_shift_del	c.1635	p.F545fs	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYOM1	HGNC	ENSG00000101605				33	0	0	45	5	10
GALNT1	0	genome.wustl.edu	37	18	33234733	33234733	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	18	33234733	33234733	A	-	DEL	GALNT1	ENST00000269195	human	ensembl	74_37	+1	known	frame_shift_del	c.107	p.K38fs	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT1	HGNC	ENSG00000141429				51	0	0	79	9	10.2273
GALNT1	0	genome.wustl.edu	37	18	33243635	33243635	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	18	33243635	33243635	G	-	DEL	GALNT1	ENST00000269195	human	ensembl	74_37	+1	known	frame_shift_del	c.183	p.K63fs	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT1	HGNC	ENSG00000141429				82	0	0	72	12	14.2857
DCC	0	genome.wustl.edu	37	18	50734091	50734091	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	18	50734091	50734091	A	-	DEL	DCC	ENST00000442544	human	ensembl	74_37	+1	known	frame_shift_del	c.1765	p.K590fs	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DCC	HGNC	ENSG00000187323				79	0	0	89	7	7.29167
ZBTB14	0	genome.wustl.edu	37	18	5291776	5291779	+	Frame_Shift_Del	DEL	TACT	TACT	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	TACT	TACT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	18	5291776	5291779	TACT	-	DEL	ZBTB14	ENST00000357006	human	ensembl	74_37	-1	known	frame_shift_del	c.431_428	p.K143fs	1.000:1.000:1.000:1.000	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB14	HGNC	ENSG00000198081				185	0	0	152	10	6.17284
LMAN1	0	genome.wustl.edu	37	18	57013194	57013194	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	18	57013194	57013194	T	-	DEL	LMAN1	ENST00000251047	human	ensembl	74_37	-1	known	frame_shift_del	c.912	p.E305fs	0.898	superfamily_HMG_box_dom	pfam_Lectin_leg,superfamily_ConA-like_lec_gl_sf,superfamily_HMG_box_dom	-	no_errors	LMAN1	HGNC	ENSG00000074695				94	0	0	72	16	18.1818
CDH19	0	genome.wustl.edu	37	18	64172527	64172527	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	18	64172527	64172527	A	-	DEL	CDH19	ENST00000262150	human	ensembl	74_37	-1	known	frame_shift_del	c.1841	p.L614fs	0.336	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH19	HGNC	ENSG00000071991				111	0	0	98	20	16.9492
LAMA1	0	genome.wustl.edu	37	18	6942222	6942222	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	18	6942222	6942222	T	-	DEL	LAMA1	ENST00000389658	human	ensembl	74_37	-1	known	frame_shift_del	c.9084	p.K3028fs	0.999	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680				59	0	0	52	7	11.8644
LAMA1	0	genome.wustl.edu	37	18	7038885	7038885	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	18	7038885	7038885	T	-	DEL	LAMA1	ENST00000389658	human	ensembl	74_37	-1	known	frame_shift_del	c.1487	p.N496fs	1.000	pfam_EGF_laminin,smart_EGF_laminin,smart_EG-like_dom,pfscan_EGF_laminin	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680				95	0	0	87	8	8.42105
TYK2	0	genome.wustl.edu	37	19	10468575	10468575	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	10468575	10468575	G	-	DEL	TYK2	ENST00000264818	human	ensembl	74_37	-1	known	frame_shift_del	c.2331	p.W778fs	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain,pfscan_Prot_kinase_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_TYK2_N	-	no_errors	TYK2	HGNC	ENSG00000105397				45	0	0	27	3	10
IL27RA	0	genome.wustl.edu	37	19	14150577	14150577	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	14150577	14150577	C	-	DEL	IL27RA	ENST00000263379	human	ensembl	74_37	+1	known	frame_shift_del	c.389	p.R132fs	0.008	superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL27RA	HGNC	ENSG00000104998				59	0	0	54	7	11.4754
AKAP8L	0	genome.wustl.edu	37	19	15491400	15491402	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	15491400	15491402	CTT	-	DEL	AKAP8L	ENST00000397410	human	ensembl	74_37	-1	known	in_frame_del	c.1560_1558	p.K520in_frame_del	1.000:1.000:1.000	pfam_AKAP95	pfam_AKAP95	-	no_errors	AKAP8L	HGNC	ENSG00000011243				56	0	0	51	7	12.069
TMEM38A	0	genome.wustl.edu	37	19	16790890	16790890	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	16790890	16790890	G	-	DEL	TMEM38A	ENST00000187762	human	ensembl	74_37	+1	known	frame_shift_del	c.220	p.E75fs	1.000	pfam_TRIC_channel	pfam_TRIC_channel	-	no_errors	TMEM38A	HGNC	ENSG00000072954				51	0	0	44	7	13.7255
NCAN	0	genome.wustl.edu	37	19	19338279	19338279	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	19338279	19338279	C	-	DEL	NCAN	ENST00000252575	human	ensembl	74_37	+1	known	frame_shift_del	c.1850	p.W619fs	0.000	NULL	pfam_Link,pfam_C-type_lectin,pfam_Sushi_SCR_CCP,pfam_Ig_V-set,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Link,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link,prints_AntifreezeII	-	no_errors	NCAN	HGNC	ENSG00000130287				28	0	0	32	7	17.9487
ZNF506	0	genome.wustl.edu	37	19	19916883	19916883	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	19916883	19916883	T	-	DEL	ZNF506	ENST00000443905	human	ensembl	74_37	-1	known	frame_shift_del	c.183	p.K61fs	0.125	smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF506	HGNC	ENSG00000081665				139	0	0	133	8	5.67376
ZNF66	0	genome.wustl.edu	37	19	20988745	20988745	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	20988745	20988745	A	-	DEL	ZNF66	ENST00000344519	human	ensembl	74_37	+1	known	frame_shift_del	c.339	p.G116fs	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF66	HGNC	ENSG00000160229				72	0	0	47	14	22.9508
ENSG00000268555	0	genome.wustl.edu	37	19	21753653	21753653	+	RNA	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	21753653	21753653	G	-	DEL	ENSG00000268555	ENST00000596996	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	RP11-678G14.3	Clone_based_vega_gene	ENSG00000268555				10	0	0	3	2	40
HNRNPL	0	genome.wustl.edu	37	19	39330959	39330959	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	39330959	39330959	G	-	DEL	HNRNPL	ENST00000221419	human	ensembl	74_37	-1	known	frame_shift_del	c.1010	p.P337fs	1.000	tigrfam_HnRNP-L_PTB	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP-L_PTB	-	no_errors	HNRNPL	HGNC	ENSG00000104824				8	0	0	6	2	25
BCKDHA	0	genome.wustl.edu	37	19	41919965	41919967	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	41919965	41919967	CTT	-	DEL	BCKDHA	ENST00000595085	human	ensembl	74_37	+1	known	in_frame_del	c.489_491	p.F164in_frame_del	1.000:1.000:1.000	pfam_DH_E1	pfam_DH_E1,pfam_Transketolase_N	-	no_errors	BCKDHA	HGNC	ENSG00000248098				55	0	0	35	10	22.2222
ZNF223	0	genome.wustl.edu	37	19	44571321	44571321	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	44571321	44571321	A	-	DEL	ZNF223	ENST00000591793	human	ensembl	74_37	+1	known	frame_shift_del	c.1670	p.N559fs	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF223	Uniprot_gn	ENSG00000267022				133	0	0	168	13	7.18232
NTN5	0	genome.wustl.edu	37	19	49173894	49173894	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	49173894	49173894	C	-	DEL	NTN5	ENST00000270235	human	ensembl	74_37	-1	known	frame_shift_del	c.350	p.G117fs	0.924	NULL	pfam_Netrin_module_non-TIMP,pfam_EGF_laminin,superfamily_TIMP-like_OB-fold,smart_EGF_laminin,smart_Netrin_module_non-TIMP,pfscan_EGF_laminin,pfscan_Netrin_domain	-	no_errors	NTN5	HGNC	ENSG00000142233				9	0	0	3	2	40
IZUMO1	0	genome.wustl.edu	37	19	49244679	49244679	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	49244679	49244679	C	-	DEL	IZUMO1	ENST00000332955	human	ensembl	74_37	-1	known	frame_shift_del	c.811	p.E271fs	0.000	NULL	NULL	-	no_errors	IZUMO1	HGNC	ENSG00000182264				81	0	0	46	8	14.8148
CGB2	0	genome.wustl.edu	37	19	49536341	49536341	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	49536341	49536341	G	-	DEL	CGB2	ENST00000359342	human	ensembl	74_37	+1	known	frame_shift_del	c.355	p.G120fs	0.999	pfam_Cys_knot,smart_Gonadotropin_bsu	pfam_Cys_knot,smart_Gonadotropin_bsu	-	no_errors	CGB2	HGNC	ENSG00000104818				86	0	0	57	3	5
TEAD2	0	genome.wustl.edu	37	19	49850473	49850473	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	49850473	49850473	G	-	DEL	TEAD2	ENST00000311227	human	ensembl	74_37	-1	known	frame_shift_del	c.883	p.H295fs	0.961	pfam_TEA/ATTS,pirsf_TEF	pfam_TEA/ATTS,smart_TEA/ATTS,pirsf_TEF,pfscan_TEA/ATTS,prints_TEA/ATTS	-	no_errors	TEAD2	HGNC	ENSG00000074219				109	0	0	78	35	30.9735
PIH1D1	0	genome.wustl.edu	37	19	49950611	49950612	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	49950611	49950612	-	G	INS	PIH1D1	ENST00000262265	human	ensembl	74_37	-1	known	frame_shift_ins	c.595_594	p.G198fs	0.000:0.000	NULL	pfam_PIH	-	no_errors	PIH1D1	HGNC	ENSG00000104872				51	0	0	51	9	15
PTPRS	0	genome.wustl.edu	37	19	5231449	5231449	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	5231449	5231449	G	-	DEL	PTPRS	ENST00000372412	human	ensembl	74_37	-1	known	frame_shift_del	c.2030	p.P677fs	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom	-	no_errors	PTPRS	HGNC	ENSG00000105426				32	0	0	20	5	20
MBOAT7	0	genome.wustl.edu	37	19	54678002	54678002	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	19	54678002	54678002	C	-	DEL	MBOAT7	ENST00000245615	human	ensembl	74_37	-1	known	frame_shift_del	c.1155	p.R386fs	0.033	pfam_MBOAT_fam	pfam_MBOAT_fam	-	no_errors	MBOAT7	HGNC	ENSG00000125505				77	0	0	57	7	10.9375
SEPT10	0	genome.wustl.edu	37	2	110301828	110301828	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	110301828	110301828	T	-	DEL	SEPT10	ENST00000356688	human	ensembl	74_37	-1	putative	frame_shift_del	c.1506	p.K502fs	0.004	NULL	pfam_Cell_div_GTP-bd,superfamily_P-loop_NTPase	-	no_errors	SEPT10	HGNC	ENSG00000186522				40	0	0	47	7	12.963
NPHP1	0	genome.wustl.edu	37	2	110926098	110926098	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	110926098	110926098	T	-	DEL	NPHP1	ENST00000316534	human	ensembl	74_37	-1	known	frame_shift_del	c.555	p.K185fs	0.398	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	NPHP1	HGNC	ENSG00000144061				109	0	0	115	13	10.1562
ANAPC1	0	genome.wustl.edu	37	2	112582738	112582739	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	112582738	112582739	-	G	INS	ANAPC1	ENST00000341068	human	ensembl	74_37	-1	known	frame_shift_ins	c.2711_2710	p.Q904fs	0.026:0.027	NULL	NULL	-	no_errors	ANAPC1	HGNC	ENSG00000153107				168	0	0	141	12	7.84314
UGGT1	0	genome.wustl.edu	37	2	128867265	128867267	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	128867265	128867267	AAG	-	DEL	UGGT1	ENST00000259253	human	ensembl	74_37	+1	known	in_frame_del	c.466_468	p.K157in_frame_del	0.971:0.996:1.000	NULL	pfam_UDP-g_GGtrans	-	no_errors	UGGT1	HGNC	ENSG00000136731				127	0	0	110	14	11.2903
UBXN4	0	genome.wustl.edu	37	2	136540365	136540365	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	136540365	136540365	A	-	DEL	UBXN4	ENST00000272638	human	ensembl	74_37	+1	known	frame_shift_del	c.1435	p.K480fs	1.000	NULL	pfam_UBX,superfamily_Thioredoxin-like_fold,smart_UBX,pfscan_UBX	-	no_errors	UBXN4	HGNC	ENSG00000144224				218	0	0	235	35	12.963
CCDC148	0	genome.wustl.edu	37	2	159107284	159107284	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	159107284	159107284	T	-	DEL	CCDC148	ENST00000283233	human	ensembl	74_37	-1	known	frame_shift_del	c.1251	p.I418fs	0.032	NULL	NULL	-	no_errors	CCDC148	HGNC	ENSG00000153237				11	0	0	7	4	36.3636
PLA2R1	0	genome.wustl.edu	37	2	160801442	160801442	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	160801442	160801442	T	-	DEL	PLA2R1	ENST00000283243	human	ensembl	74_37	-1	known	frame_shift_del	c.4119	p.G1374fs	0.396	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin	-	no_errors	PLA2R1	HGNC	ENSG00000153246				144	0	0	130	21	13.9073
IFIH1	0	genome.wustl.edu	37	2	163134715	163134716	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	163134715	163134716	-	T	INS	IFIH1	ENST00000263642	human	ensembl	74_37	-1	known	frame_shift_ins	c.1765_1764	p.A588fs	1.000:1.000	superfamily_P-loop_NTPase,superfamily_ARM-type_fold	pfam_RIG-I_C-RD,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_CARD,superfamily_P-loop_NTPase,superfamily_DEATH-like_dom,superfamily_ARM-type_fold,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	IFIH1	HGNC	ENSG00000115267				66	0	0	61	9	12.8571
FIGN	0	genome.wustl.edu	37	2	164468131	164468132	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	164468131	164468132	-	T	INS	FIGN	ENST00000333129	human	ensembl	74_37	-1	known	frame_shift_ins	c.211_210	p.Y70fs	1.000:0.998	NULL	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	FIGN	HGNC	ENSG00000182263				162	0	0	117	20	14.5985
GRB14	0	genome.wustl.edu	37	2	165365288	165365288	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	165365288	165365288	T	-	DEL	GRB14	ENST00000263915	human	ensembl	74_37	-1	known	frame_shift_del	c.891	p.K297fs	0.015	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_BPS-dom,pfam_SH2,pfam_Ras-assoc,pfam_Pleckstrin_homology,smart_Ras-assoc,smart_Pleckstrin_homology,smart_SH2,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SH2,prints_SH2	-	no_errors	GRB14	HGNC	ENSG00000115290				126	0	0	93	34	26.7717
COBLL1	0	genome.wustl.edu	37	2	165551296	165551296	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	165551296	165551296	A	-	DEL	COBLL1	ENST00000194871	human	ensembl	74_37	-1	known	frame_shift_del	c.2921	p.L974fs	0.972	NULL	pfam_Cordon-bleu_ubiquitin_domain,pfscan_WH2_dom	-	no_errors	COBLL1	HGNC	ENSG00000082438				39	0	0	32	14	30.4348
DHRS9	0	genome.wustl.edu	37	2	169948389	169948389	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	169948389	169948389	A	-	DEL	DHRS9	ENST00000432060	human	ensembl	74_37	+1	known	frame_shift_del	c.842	p.K283fs	0.158	NULL	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	DHRS9	HGNC	ENSG00000073737				61	0	0	49	9	15.5172
DHRS9	0	genome.wustl.edu	37	2	169952169	169952169	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	169952169	169952169	A	-	DEL	DHRS9	ENST00000432060	human	ensembl	74_37	+1	known	frame_shift_del	c.1032	p.D346fs	0.401	NULL	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	DHRS9	HGNC	ENSG00000073737				173	0	0	149	24	13.8728
PDK1	0	genome.wustl.edu	37	2	173435501	173435501	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	173435501	173435501	C	-	DEL	PDK1	ENST00000282077	human	ensembl	74_37	+1	known	frame_shift_del	c.894	p.P300fs	0.989	pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,smart_HATPase_ATP-bd,pfscan_Sig_transdc_His_kinase_core	pfam_BCDHK/PDK_N,pfam_HATPase_ATP-bd,superfamily_BCDHK/PDK_N,superfamily_HATPase_ATP-bd,smart_HATPase_ATP-bd,pfscan_Sig_transdc_His_kinase_core	-	no_errors	PDK1	HGNC	ENSG00000152256				80	0	0	74	8	9.7561
GPR155	0	genome.wustl.edu	37	2	175346265	175346265	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	175346265	175346265	A	-	DEL	GPR155	ENST00000295500	human	ensembl	74_37	-1	known	frame_shift_del	c.420	p.F140fs	1.000	pfam_Auxin_eff	pfam_Auxin_eff,pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	GPR155	HGNC	ENSG00000163328				280	0	0	264	45	14.5631
RAD51AP2	0	genome.wustl.edu	37	2	17698737	17698737	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	17698737	17698737	T	-	DEL	RAD51AP2	ENST00000399080	human	ensembl	74_37	-1	known	frame_shift_del	c.946	p.T316fs	0.003	NULL	NULL	-	no_errors	RAD51AP2	HGNC	ENSG00000214842				64	0	0	56	8	12.5
HOXD8	0	genome.wustl.edu	37	2	176995458	176995458	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	176995458	176995458	C	-	DEL	HOXD8	ENST00000313173	human	ensembl	74_37	+1	known	frame_shift_del	c.364	p.C124fs	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,prints_Homeobox_metazoa,pfscan_Homeobox_dom	-	no_errors	HOXD8	HGNC	ENSG00000175879				74	0	0	51	9	15
CCDC141	0	genome.wustl.edu	37	2	179720989	179720989	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	179720989	179720989	T	-	DEL	CCDC141	ENST00000420890	human	ensembl	74_37	-1	known	frame_shift_del	c.2860	p.M954fs	0.996	NULL	pfam_Ig_I-set,pfam_Spectrin_repeat,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	CCDC141	HGNC	ENSG00000163492				111	0	0	113	14	11.0236
DNAH7	0	genome.wustl.edu	37	2	196788373	196788374	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	196788373	196788374	-	T	INS	DNAH7	ENST00000312428	human	ensembl	74_37	-1	known	frame_shift_ins	c.3771_3770	p.N1257fs	0.000:0.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_hand_dom	-	no_errors	DNAH7	HGNC	ENSG00000118997				91	0	0	88	8	8.33333
HECW2	0	genome.wustl.edu	37	2	197171263	197171263	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	197171263	197171263	G	-	DEL	HECW2	ENST00000260983	human	ensembl	74_37	-1	known	frame_shift_del	c.2763	p.V922fs	0.105	NULL	pfam_HECT,pfam_WW_dom,pfam_C2_dom,superfamily_HECT,superfamily_WW_dom,superfamily_C2_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_C2_dom,pfscan_WW_dom	-	no_errors	HECW2	HGNC	ENSG00000138411				111	0	0	87	14	13.8614
CLK1	0	genome.wustl.edu	37	2	201722550	201722550	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	201722550	201722550	A	-	DEL	CLK1	ENST00000321356	human	ensembl	74_37	-1	known	frame_shift_del	c.723	p.F241fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CLK1	HGNC	ENSG00000013441				109	0	0	90	17	15.8879
ORC2	0	genome.wustl.edu	37	2	201822217	201822217	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	201822217	201822217	T	-	DEL	ORC2	ENST00000234296	human	ensembl	74_37	-1	known	frame_shift_del	c.145	p.I49fs	0.998	NULL	pfam_ORC2	-	no_errors	ORC2	HGNC	ENSG00000115942				71	0	0	46	10	17.8571
ALS2CR11	0	genome.wustl.edu	37	2	202352566	202352566	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	202352566	202352566	T	-	DEL	ALS2CR11	ENST00000286195	human	ensembl	74_37	-1	known	frame_shift_del	c.1641	p.V548fs	0.040	NULL	superfamily_C2_dom	-	no_errors	ALS2CR11	HGNC	ENSG00000155754				168	0	0	128	16	11.1111
ALS2	0	genome.wustl.edu	37	2	202591522	202591522	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	202591522	202591522	G	-	DEL	ALS2	ENST00000264276	human	ensembl	74_37	-1	known	frame_shift_del	c.3047	p.P1016fs	0.039	NULL	pfam_Reg_chr_condens,pfam_MORN,pfam_VPS9,pfam_DH-domain,superfamily_RCC1/BLIP-II,superfamily_DH-domain,smart_MORN,pfscan_VPS9,pfscan_Reg_chr_condens,pfscan_DH-domain,prints_Reg_chr_condens	-	no_errors	ALS2	HGNC	ENSG00000003393				63	0	0	44	5	10.2041
ZDBF2	0	genome.wustl.edu	37	2	207174428	207174428	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	207174428	207174428	A	-	DEL	ZDBF2	ENST00000374423	human	ensembl	74_37	+1	known	frame_shift_del	c.5176	p.K1728fs	0.000	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186				71	0	0	48	11	18.6441
MAP2	0	genome.wustl.edu	37	2	210545527	210545528	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	210545527	210545528	-	A	INS	MAP2	ENST00000360351	human	ensembl	74_37	+1	known	frame_shift_ins	c.430_431	p.Q145fs	1.000:1.000	NULL	pfam_MAP2_projctn,pfam_MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018				302	0	0	280	23	7.59076
MAP2	0	genome.wustl.edu	37	2	210561666	210561667	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	210561666	210561667	-	A	INS	MAP2	ENST00000360351	human	ensembl	74_37	+1	known	frame_shift_ins	c.4413_4414	p.T1473fs	1.000:1.000	pfam_MAP2_projctn	pfam_MAP2_projctn,pfam_MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018				51	0	0	48	12	20
KANSL1L	0	genome.wustl.edu	37	2	210993786	210993789	+	Frame_Shift_Del	DEL	GTTA	GTTA	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	GTTA	GTTA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	210993786	210993789	GTTA	-	DEL	KANSL1L	ENST00000281772	human	ensembl	74_37	-1	known	frame_shift_del	c.1199_1196	p.L399fs	1.000:1.000:0.998:1.000	NULL	NULL	-	no_errors	KANSL1L	HGNC	ENSG00000144445				164	0	0	140	20	12.5
RQCD1	0	genome.wustl.edu	37	2	219449364	219449364	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	219449364	219449364	T	-	DEL	RQCD1	ENST00000509807	human	ensembl	74_37	+1	known	frame_shift_del	c.350	p.L119fs	1.000	pfam_Rcd1,superfamily_ARM-type_fold	pfam_Rcd1,superfamily_ARM-type_fold	-	no_errors	RQCD1	HGNC	ENSG00000144580				210	0	0	197	30	13.2159
CCDC108	0	genome.wustl.edu	37	2	219892999	219892999	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	219892999	219892999	G	-	DEL	CCDC108	ENST00000341552	human	ensembl	74_37	-1	known	frame_shift_del	c.1775	p.P592fs	0.993	NULL	superfamily_PapD-like,pfscan_MSP_dom	-	no_errors	CCDC108	HGNC	ENSG00000181378				48	0	0	38	9	19.1489
INPP5D	0	genome.wustl.edu	37	2	234072474	234072474	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	234072474	234072474	C	-	DEL	INPP5D	ENST00000359570	human	ensembl	74_37	+1	known	frame_shift_del	c.1326	p.L444fs	0.998	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	pfam_Endo/exonuclease/phosphatase,pfam_SH2,superfamily_Endo/exonuclease/phosphatase,smart_SH2,smart_IPPc,pfscan_SH2,prints_SH2	-	no_errors	INPP5D	HGNC	ENSG00000168918				92	0	0	80	10	11.1111
DGKD	0	genome.wustl.edu	37	2	234299106	234299106	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	234299106	234299106	A	-	DEL	DGKD	ENST00000264057	human	ensembl	74_37	+1	known	frame_shift_del	c.325	p.N110fs	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_SAM_2,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_SAM_type1,pfam_Pleckstrin_homology,superfamily_SAM/pointed,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_SAM,pfscan_Pleckstrin_homology,pfscan_SAM,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKD	HGNC	ENSG00000077044				94	0	0	53	4	7.01754
PASK	0	genome.wustl.edu	37	2	242046054	242046054	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	242046054	242046054	C	-	DEL	PASK	ENST00000358649	human	ensembl	74_37	-1	known	frame_shift_del	c.3920	p.G1307fs	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAS_fold,superfamily_Kinase-like_dom,superfamily_PAS,smart_PAS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAS,pfscan_Prot_kinase_dom,tigrfam_PAS	-	no_errors	PASK	HGNC	ENSG00000115687				110	0	0	97	10	9.34579
GTF3C2	0	genome.wustl.edu	37	2	27559091	27559092	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	27559091	27559092	-	C	INS	GTF3C2	ENST00000264720	human	ensembl	74_37	-1	known	frame_shift_ins	c.1329_1328	p.L444fs	1.000:1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	GTF3C2	HGNC	ENSG00000115207				110	0	0	88	10	10.2041
BIRC6	0	genome.wustl.edu	37	2	32768566	32768568	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	32768566	32768568	CTT	-	DEL	BIRC6	ENST00000421745	human	ensembl	74_37	+1	known	in_frame_del	c.12550_12552	p.L4185in_frame_del	1.000:1.000:1.000	NULL	pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2	-	no_errors	BIRC6	HGNC	ENSG00000115760				119	0	0	109	13	10.6557
CCDC88A	0	genome.wustl.edu	37	2	55544436	55544436	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	55544436	55544436	T	-	DEL	CCDC88A	ENST00000436346	human	ensembl	74_37	-1	known	frame_shift_del	c.3652	p.M1218fs	0.990	NULL	pfam_Hook-related_fam,superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CCDC88A	HGNC	ENSG00000115355				65	0	0	53	9	14.5161
USP34	0	genome.wustl.edu	37	2	61633020	61633020	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	61633020	61633020	T	-	DEL	USP34	ENST00000398571	human	ensembl	74_37	-1	known	frame_shift_del	c.375	p.K125fs	0.935	NULL	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	-	no_errors	USP34	HGNC	ENSG00000115464				64	0	0	65	18	21.6867
EHBP1	0	genome.wustl.edu	37	2	62991424	62991424	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	62991424	62991424	A	-	DEL	EHBP1	ENST00000263991	human	ensembl	74_37	+1	known	frame_shift_del	c.186	p.N64fs	1.000	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	EHBP1	HGNC	ENSG00000115504				95	0	0	82	17	17.1717
PPP3R1	0	genome.wustl.edu	37	2	68408114	68408114	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	68408114	68408114	T	-	DEL	PPP3R1	ENST00000234310	human	ensembl	74_37	-1	known	frame_shift_del	c.494	p.K165fs	1.000	NULL	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	PPP3R1	HGNC	ENSG00000221823				36	0	0	34	7	17.0732
ZNF638	0	genome.wustl.edu	37	2	71649954	71649954	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	71649954	71649954	A	-	DEL	ZNF638	ENST00000264447	human	ensembl	74_37	+1	known	frame_shift_del	c.3310	p.N1105fs	1.000	NULL	pfam_RRM_dom,smart_Znf_U1,smart_Znf_C2H2-like,smart_RRM_dom,pfscan_Znf_C2H2_matrin,pfscan_RRM_dom	-	no_errors	ZNF638	HGNC	ENSG00000075292				75	0	0	74	8	9.7561
ALMS1	0	genome.wustl.edu	37	2	73651726	73651726	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	73651726	73651726	T	-	DEL	ALMS1	ENST00000264448	human	ensembl	74_37	+1	known	frame_shift_del	c.933	p.L313fs	0.007	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127				43	0	0	31	6	16.2162
SLC4A5	0	genome.wustl.edu	37	2	74451994	74451994	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	74451994	74451994	T	-	DEL	SLC4A5	ENST00000357822	human	ensembl	74_37	-1	known	frame_shift_del	c.3267	p.A1091fs	1.000	tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A5	HGNC	ENSG00000188687				140	0	0	121	15	11.0294
STARD7	0	genome.wustl.edu	37	2	96859067	96859067	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	96859067	96859067	T	-	DEL	STARD7	ENST00000337288	human	ensembl	74_37	-1	known	frame_shift_del	c.573	p.K191fs	1.000	pfam_START_lipid-bd_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom	pfam_START_lipid-bd_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom	-	no_errors	STARD7	HGNC	ENSG00000084090				190	0	0	138	17	10.9677
FAHD2B	0	genome.wustl.edu	37	2	97749725	97749725	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	97749725	97749725	G	-	DEL	FAHD2B	ENST00000272610	human	ensembl	74_37	-1	known	frame_shift_del	c.842	p.P281fs	1.000	pfam_Fumarylacetoacetase_C,superfamily_Fumarylacetoacetase_C-rel	pfam_Fumarylacetoacetase_C,superfamily_Fumarylacetoacetase_C-rel	-	no_errors	FAHD2B	HGNC	ENSG00000144199				33	0	0	17	4	19.0476
MITD1	0	genome.wustl.edu	37	2	99785865	99785865	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	2	99785865	99785865	A	-	DEL	MITD1	ENST00000289359	human	ensembl	74_37	-1	known	frame_shift_del	c.723	p.H242fs	1.000	NULL	pfam_MIT,smart_MIT	-	no_errors	MITD1	HGNC	ENSG00000158411				62	0	0	55	8	12.6984
ESF1	0	genome.wustl.edu	37	20	13763275	13763275	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	20	13763275	13763275	T	-	DEL	ESF1	ENST00000202816	human	ensembl	74_37	-1	known	frame_shift_del	c.512	p.N171fs	0.076	NULL	pfam_NUC153	-	no_errors	ESF1	HGNC	ENSG00000089048				54	0	0	57	12	17.3913
PYGB	0	genome.wustl.edu	37	20	25260916	25260918	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	20	25260916	25260918	GAA	-	DEL	PYGB	ENST00000216962	human	ensembl	74_37	+1	known	in_frame_del	c.1107_1109	p.K371in_frame_del	1.000:1.000:1.000	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	-	no_errors	PYGB	HGNC	ENSG00000100994				71	0	0	84	9	9.67742
GINS1	0	genome.wustl.edu	37	20	25422397	25422397	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	20	25422397	25422397	A	-	DEL	GINS1	ENST00000262460	human	ensembl	74_37	+1	known	frame_shift_del	c.507	p.N172fs	0.232	NULL	NULL	-	no_errors	GINS1	HGNC	ENSG00000101003				72	0	0	82	8	8.88889
ZNF341	0	genome.wustl.edu	37	20	32344991	32344991	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	20	32344991	32344991	C	-	DEL	ZNF341	ENST00000375200	human	ensembl	74_37	+1	known	frame_shift_del	c.779	p.T262fs	0.551	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF341	HGNC	ENSG00000131061				231	0	0	229	23	9.12698
RPRD1B	0	genome.wustl.edu	37	20	36694647	36694647	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	20	36694647	36694647	A	-	DEL	RPRD1B	ENST00000373433	human	ensembl	74_37	+1	known	frame_shift_del	c.820	p.K275fs	1.000	NULL	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,smart_CID_dom	-	no_errors	RPRD1B	HGNC	ENSG00000101413				124	0	0	107	26	19.5489
SALL4	0	genome.wustl.edu	37	20	50400983	50400983	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	20	50400983	50400983	C	-	DEL	SALL4	ENST00000217086	human	ensembl	74_37	-1	known	frame_shift_del	c.2983	p.V995fs	0.001	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL4	HGNC	ENSG00000101115				59	0	0	57	21	26.9231
CYP24A1	0	genome.wustl.edu	37	20	52775519	52775519	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	20	52775519	52775519	T	-	DEL	CYP24A1	ENST00000216862	human	ensembl	74_37	-1	known	frame_shift_del	c.1134	p.A379fs	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_CYP24A_mit,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	-	no_errors	CYP24A1	HGNC	ENSG00000019186				142	0	0	142	12	7.79221
SYCP2	0	genome.wustl.edu	37	20	58452519	58452519	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	20	58452519	58452519	T	-	DEL	SYCP2	ENST00000357552	human	ensembl	74_37	-1	known	frame_shift_del	c.3071	p.N1024fs	1.000	NULL	NULL	-	no_errors	SYCP2	HGNC	ENSG00000196074				50	0	0	47	7	12.963
PCMTD2	0	genome.wustl.edu	37	20	62895852	62895854	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	20	62895852	62895854	CTT	-	DEL	PCMTD2	ENST00000308824	human	ensembl	74_37	+1	known	in_frame_del	c.378_380	p.F128in_frame_del	1.000:0.998:0.999	pfam_PCMT	pfam_PCMT	-	no_errors	PCMTD2	HGNC	ENSG00000203880				74	0	0	69	8	10.3896
PLCB4	0	genome.wustl.edu	37	20	9353043	9353043	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	20	9353043	9353043	A	-	DEL	PLCB4	ENST00000334005	human	ensembl	74_37	+1	known	frame_shift_del	c.679	p.I229fs	1.000	pirsf_PLC-beta,pfam_PLipase_C_EF-hand-like	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_PLC-beta_CS,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,prints_Pinositol_PLipase_C,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB4	HGNC	ENSG00000101333				42	0	0	57	5	8.06452
NRIP1	0	genome.wustl.edu	37	21	16338330	16338330	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	21	16338330	16338330	T	-	DEL	NRIP1	ENST00000318948	human	ensembl	74_37	-1	known	frame_shift_del	c.2184	p.E729fs	0.998	NULL	NULL	-	no_errors	NRIP1	HGNC	ENSG00000180530				79	0	0	48	11	18.6441
USP25	0	genome.wustl.edu	37	21	17191019	17191019	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	21	17191019	17191019	A	-	DEL	USP25	ENST00000400183	human	ensembl	74_37	+1	known	frame_shift_del	c.934	p.K313fs	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Ubiquitin-int_motif,superfamily_UBA-like,smart_Ubiquitin-int_motif,pfscan_Ubiquitin-int_motif,pfscan_Peptidase_C19/C67	-	no_errors	USP25	HGNC	ENSG00000155313				89	0	0	72	8	10
PRDM15	0	genome.wustl.edu	37	21	43274764	43274764	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	21	43274764	43274764	G	-	DEL	PRDM15	ENST00000269844	human	ensembl	74_37	-1	known	frame_shift_del	c.1547	p.P516fs	0.470	pfscan_SET_dom	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM15	HGNC	ENSG00000141956				72	0	0	70	7	9.09091
DIP2A	0	genome.wustl.edu	37	21	47975905	47975905	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	21	47975905	47975905	A	-	DEL	DIP2A	ENST00000318711	human	ensembl	74_37	+1	known	frame_shift_del	c.3402	p.K1136fs	0.519	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2A	HGNC	ENSG00000160305				126	0	0	132	18	12
SMARCB1	0	genome.wustl.edu	37	22	24134057	24134057	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	22	24134057	24134057	A	-	DEL	SMARCB1	ENST00000263121	human	ensembl	74_37	+1	known	frame_shift_del	c.208	p.T72fs	1.000	pirsf_SWI_SNF_chromatin_remodel_cplx	pfam_SNF5,pirsf_SWI_SNF_chromatin_remodel_cplx	-	no_errors	SMARCB1	HGNC	ENSG00000099956				125	0	0	104	6	5.45455
CRYBB1	0	genome.wustl.edu	37	22	26997913	26997913	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	22	26997913	26997913	C	-	DEL	CRYBB1	ENST00000215939	human	ensembl	74_37	-1	known	frame_shift_del	c.505	p.D169fs	1.000	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYBB1	HGNC	ENSG00000100122				56	0	0	46	4	8
LOC101929539	0	genome.wustl.edu	37	22	27256832	27256832	+	RNA	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	22	27256832	27256832	T	-	DEL	LOC101929539	ENST00000434868	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.034	-	-	-	no_errors	RP1-90L6.2	Clone_based_vega_gene	ENSG00000223704				8	0	0	4	2	33.3333
ZNRF3	0	genome.wustl.edu	37	22	29383158	29383159	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	22	29383158	29383159	-	C	INS	ZNRF3	ENST00000544604	human	ensembl	74_37	+1	known	frame_shift_ins	c.395_396	p.K134fs	1.000:1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	ZNRF3	HGNC	ENSG00000183579				64	0	0	57	5	8.06452
PLA2G3	0	genome.wustl.edu	37	22	31536298	31536299	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	22	31536298	31536299	-	A	INS	PLA2G3	ENST00000215885	human	ensembl	74_37	-1	known	frame_shift_ins	c.43_42	p.G14fs	0.273:0.264	NULL	pfam_PLipase_A2,superfamily_PLipase_A2_dom	-	no_errors	PLA2G3	HGNC	ENSG00000100078				43	0	0	32	9	21.9512
MB	0	genome.wustl.edu	37	22	36003418	36003418	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	22	36003418	36003418	C	-	DEL	MB	ENST00000359787	human	ensembl	74_37	-1	known	frame_shift_del	c.391	p.A131fs	0.990	superfamily_Globin-like,pfscan_Globin,prints_Myoglobin	pfam_Globin,superfamily_Globin-like,pfscan_Globin,prints_Myoglobin	-	no_errors	MB	HGNC	ENSG00000198125				70	0	0	58	7	10.7692
FANCD2	0	genome.wustl.edu	37	3	10119789	10119789	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	10119789	10119789	C	-	DEL	FANCD2	ENST00000287647	human	ensembl	74_37	+1	known	frame_shift_del	c.2884	p.P963fs	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	FANCD2	HGNC	ENSG00000144554				141	0	0	144	25	14.7929
ALCAM	0	genome.wustl.edu	37	3	105250904	105250904	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	105250904	105250904	A	-	DEL	ALCAM	ENST00000306107	human	ensembl	74_37	+1	known	frame_shift_del	c.453	p.K153fs	0.891	pfam_CD80_C2-set,pfscan_Ig-like_dom	pfam_CD80_C2-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	ALCAM	HGNC	ENSG00000170017				249	0	0	189	29	13.3028
MORC1	0	genome.wustl.edu	37	3	108682419	108682419	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	108682419	108682419	T	-	DEL	MORC1	ENST00000232603	human	ensembl	74_37	-1	known	frame_shift_del	c.2641	p.I881fs	0.062	NULL	pfam_Znf_CW,superfamily_HATPase_ATP-bd,pfscan_Znf_CW	-	no_errors	MORC1	HGNC	ENSG00000114487				68	0	0	37	14	27.451
POGLUT1	0	genome.wustl.edu	37	3	119209446	119209448	+	In_Frame_Del	DEL	CCT	CCT	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	CCT	CCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	119209446	119209448	CCT	-	DEL	POGLUT1	ENST00000295588	human	ensembl	74_37	+1	known	in_frame_del	c.846_848	p.L283in_frame_del	1.000:1.000:1.000	pfam_LipoPS_modifying,smart_LipoPS_modifying	pfam_LipoPS_modifying,smart_LipoPS_modifying	-	no_errors	POGLUT1	HGNC	ENSG00000163389				115	0	0	94	22	18.9655
POLQ	0	genome.wustl.edu	37	3	121238922	121238925	+	Frame_Shift_Del	DEL	AAGT	AAGT	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	AAGT	AAGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	121238922	121238925	AAGT	-	DEL	POLQ	ENST00000264233	human	ensembl	74_37	-1	known	frame_shift_del	c.1264_1261	p.T421fs	1.000:0.847:1.000:1.000	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_DNA-dir_DNA_pol_A_palm_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_RNaseH-like_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_DNA-dir_DNA_pol_A_palm_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_DNA_polymerase_A	-	no_errors	POLQ	HGNC	ENSG00000051341				109	0	0	57	7	10.9375
CCDC37	0	genome.wustl.edu	37	3	126155213	126155215	+	In_Frame_Del	DEL	AGG	AGG	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	126155213	126155215	AGG	-	DEL	CCDC37	ENST00000393425	human	ensembl	74_37	+1	known	in_frame_del	c.1805_1807	p.E606in_frame_del	0.974:0.968:0.975	NULL	superfamily_SuperAg_toxin_C	-	no_errors	CCDC37	HGNC	ENSG00000163885				38	0	0	23	6	20.6897
IL20RB	0	genome.wustl.edu	37	3	136710803	136710804	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	136710803	136710804	-	G	INS	IL20RB	ENST00000329582	human	ensembl	74_37	+1	known	frame_shift_ins	c.555_556	p.I187fs	0.004:0.006	pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3	pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL20RB	HGNC	ENSG00000174564				93	0	0	74	7	8.64198
XRN1	0	genome.wustl.edu	37	3	142030642	142030643	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	142030642	142030643	-	T	INS	XRN1	ENST00000264951	human	ensembl	74_37	-1	known	frame_shift_ins	c.4832_4831	p.R1611fs	0.998:1.000	pirsf_5_3_exoribonuclease_1	pfam_Put_53exo,pirsf_5_3_exoribonuclease_1	-	no_errors	XRN1	HGNC	ENSG00000114127				76	0	0	84	12	12.5
ATR	0	genome.wustl.edu	37	3	142261555	142261555	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	142261555	142261555	A	-	DEL	ATR	ENST00000350721	human	ensembl	74_37	-1	known	frame_shift_del	c.3402	p.F1134fs	1.000	pfam_UME,superfamily_ARM-type_fold,smart_UME	pfam_PI3/4_kinase_cat_dom,pfam_PIK-rel_kinase_FAT,pfam_UME,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_UME,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_HEAT_type_2,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATR	HGNC	ENSG00000175054				46	0	0	35	6	14.6341
NR2C2	0	genome.wustl.edu	37	3	15084406	15084406	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	15084406	15084406	T	-	DEL	NR2C2	ENST00000323373	human	ensembl	74_37	+1	known	frame_shift_del	c.1739	p.F582fs	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt	-	no_errors	NR2C2	HGNC	ENSG00000177463				53	0	0	52	7	11.8644
GPR171	0	genome.wustl.edu	37	3	150917110	150917110	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	150917110	150917110	A	-	DEL	GPR171	ENST00000309180	human	ensembl	74_37	-1	known	frame_shift_del	c.64	p.Y22fs	1.000	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR171	HGNC	ENSG00000174946				89	0	0	78	15	16.129
METTL6	0	genome.wustl.edu	37	3	15455535	15455535	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	15455535	15455535	A	-	DEL	METTL6	ENST00000383790	human	ensembl	74_37	-1	known	frame_shift_del	c.666	p.F222fs	0.912	pirsf_MeTrfase	pfam_Methyltransf_12,pfam_Methyltransf_11,pirsf_MeTrfase	-	no_errors	METTL6	HGNC	ENSG00000206562				77	0	0	53	11	17.1875
VEPH1	0	genome.wustl.edu	37	3	157178127	157178128	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	157178127	157178128	-	G	INS	VEPH1	ENST00000362010	human	ensembl	74_37	-1	known	frame_shift_ins	c.372_371	p.V125fs	0.251:0.996	superfamily_ARM-type_fold	pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	VEPH1	HGNC	ENSG00000197415				67	0	0	51	8	13.5593
MFI2	0	genome.wustl.edu	37	3	196751266	196751266	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	196751266	196751266	G	-	DEL	MFI2	ENST00000296350	human	ensembl	74_37	-1	known	frame_shift_del	c.395	p.T132fs	1.000	pfam_Transferrin_fam,smart_Transferrin_fam,pirsf_Transferrin,prints_Transferrin_fam	pfam_Transferrin_fam,smart_Transferrin_fam,pirsf_Transferrin,prints_Transferrin_fam	-	no_errors	MFI2	HGNC	ENSG00000163975				61	0	0	37	8	17.7778
ANO10	0	genome.wustl.edu	37	3	43647213	43647213	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	43647213	43647213	T	-	DEL	ANO10	ENST00000292246	human	ensembl	74_37	-1	known	frame_shift_del	c.132	p.D45fs	1.000	NULL	pfam_Anoctamin	-	no_errors	ANO10	HGNC	ENSG00000160746				89	0	0	94	18	16.0714
LIMD1	0	genome.wustl.edu	37	3	45637325	45637325	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	45637325	45637325	G	-	DEL	LIMD1	ENST00000273317	human	ensembl	74_37	+1	known	frame_shift_del	c.954	p.G320fs	0.000	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LIMD1	HGNC	ENSG00000144791				72	0	0	75	12	13.7931
RBM6	0	genome.wustl.edu	37	3	50098576	50098576	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	50098576	50098576	A	-	DEL	RBM6	ENST00000266022	human	ensembl	74_37	+1	known	frame_shift_del	c.2275	p.K760fs	1.000	NULL	pfam_G_patch_dom,smart_RRM_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_RRM_dom	-	no_errors	RBM6	HGNC	ENSG00000004534				70	0	0	54	11	16.9231
MAPKAPK3	0	genome.wustl.edu	37	3	50684208	50684209	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	50684208	50684209	CA	-	DEL	MAPKAPK3	ENST00000357955	human	ensembl	74_37	+1	known	frame_shift_del	c.867_868	p.T290fs	0.991:0.997	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAPKAPK3	HGNC	ENSG00000114738				75	0	0	62	5	7.46269
DOCK3	0	genome.wustl.edu	37	3	51417604	51417605	+	Frame_Shift_Del	DEL	CC	CC	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	CC	CC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	51417604	51417605	CC	-	DEL	DOCK3	ENST00000266037	human	ensembl	74_37	+1	known	frame_shift_del	c.5549_5550	p.P1852fs	0.115:0.081	NULL	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538				50	0	0	24	5	17.2414
CACNA1D	0	genome.wustl.edu	37	3	53529214	53529215	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	53529214	53529215	-	A	INS	CACNA1D	ENST00000288139	human	ensembl	74_37	+1	known	frame_shift_ins	c.21_22	p.M9fs	1.000:1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_LVDCC_a1dsu	-	no_errors	CACNA1D	HGNC	ENSG00000157388				110	0	0	92	9	8.91089
CACNA1D	0	genome.wustl.edu	37	3	53766932	53766932	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	53766932	53766932	A	-	DEL	CACNA1D	ENST00000288139	human	ensembl	74_37	+1	known	frame_shift_del	c.2624	p.I877fs	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_LVDCC_a1dsu	-	no_errors	CACNA1D	HGNC	ENSG00000157388				85	0	0	56	8	12.5
DENND6A	0	genome.wustl.edu	37	3	57627437	57627438	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	3	57627437	57627438	-	A	INS	DENND6A	ENST00000311128	human	ensembl	74_37	-1	known	frame_shift_ins	c.1075_1074	p.A358fs	1.000:1.000	pfam_Afi1_N,pfam_DENN_dom	pfam_Afi1_N,pfam_ABL9/DENND6_dom,pfam_DENN_dom	-	no_errors	DENND6A	HGNC	ENSG00000174839				91	0	0	70	7	9.09091
ADH1A	0	genome.wustl.edu	37	4	100205876	100205876	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	100205876	100205876	T	-	DEL	ADH1A	ENST00000209668	human	ensembl	74_37	-1	known	frame_shift_del	c.344	p.N115fs	0.000	pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER	pfam_ADH_GroES-like,pfam_ADH_C,superfamily_GroES-like,smart_PKS_ER	-	no_errors	ADH1A	HGNC	ENSG00000187758				88	0	0	77	19	19.7917
ALPK1	0	genome.wustl.edu	37	4	113356326	113356326	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	113356326	113356326	A	-	DEL	ALPK1	ENST00000177648	human	ensembl	74_37	+1	known	frame_shift_del	c.3057	p.K1021fs	0.994	superfamily_Kinase-like_dom,pfscan_MHCK_EF2_kinase	pfam_MHCK_EF2_kinase,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	ALPK1	HGNC	ENSG00000073331				229	0	0	205	38	15.6379
LARP7	0	genome.wustl.edu	37	4	113570754	113570754	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	113570754	113570754	A	-	DEL	LARP7	ENST00000324052	human	ensembl	74_37	+1	known	frame_shift_del	c.1206	p.T405fs	1.000	NULL	pfam_RRM_3,pfam_Lupus_La_RNA-bd,pfam_RRM_dom,smart_Lupus_La_RNA-bd,smart_RRM_dom,pfscan_Lupus_La_RNA-bd,pfscan_RRM_dom,prints_Lupus_La	-	no_errors	LARP7	HGNC	ENSG00000174720				29	0	0	40	8	16.6667
KIAA1109	0	genome.wustl.edu	37	4	123117938	123117938	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	123117938	123117938	A	-	DEL	KIAA1109	ENST00000264501	human	ensembl	74_37	+1	known	frame_shift_del	c.1201	p.N402fs	1.000	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688				54	0	0	52	6	10.3448
ADAD1	0	genome.wustl.edu	37	4	123342417	123342418	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	123342417	123342418	-	C	INS	ADAD1	ENST00000296513	human	ensembl	74_37	+1	known	frame_shift_ins	c.1489_1490	p.F499fs	1.000:0.998	pfam_A_deamin,smart_A_deamin,pfscan_A_deamin	pfam_A_deamin,pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,smart_A_deamin,pfscan_dsRNA-bd_dom,pfscan_A_deamin	-	no_errors	ADAD1	HGNC	ENSG00000164113				81	0	0	86	18	17.3077
BBS12	0	genome.wustl.edu	37	4	123664677	123664677	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	123664677	123664677	T	-	DEL	BBS12	ENST00000314218	human	ensembl	74_37	+1	known	frame_shift_del	c.1630	p.L545fs	0.348	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom	-	no_errors	BBS12	HGNC	ENSG00000181004				145	0	0	137	10	6.80272
HSPA4L	0	genome.wustl.edu	37	4	128741625	128741625	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	128741625	128741625	A	-	DEL	HSPA4L	ENST00000439123	human	ensembl	74_37	+1	known	frame_shift_del	c.1810	p.G606fs	0.951	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA4L	HGNC	ENSG00000164070				71	0	0	70	20	22.2222
SCLT1	0	genome.wustl.edu	37	4	129924995	129924995	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	129924995	129924995	T	-	DEL	SCLT1	ENST00000281142	human	ensembl	74_37	-1	known	frame_shift_del	c.327	p.K109fs	0.840	NULL	NULL	-	no_errors	SCLT1	HGNC	ENSG00000151466				112	0	0	88	15	14.5631
ABCE1	0	genome.wustl.edu	37	4	146041224	146041224	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	146041224	146041224	A	-	DEL	ABCE1	ENST00000296577	human	ensembl	74_37	+1	known	frame_shift_del	c.1063	p.M357fs	1.000	pfscan_ABC_transporter-like	pfam_ABC_transporter-like,pfam_RNaseL-inhib_metal-bd_dom,pfam_4Fe4S-bd_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,prints_ABC_E	-	no_errors	ABCE1	HGNC	ENSG00000164163				87	0	0	73	12	14.1176
OTUD4	0	genome.wustl.edu	37	4	146077123	146077125	+	In_Frame_Del	DEL	CAG	CAG	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	CAG	CAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	146077123	146077125	CAG	-	DEL	OTUD4	ENST00000447906	human	ensembl	74_37	-1	known	in_frame_del	c.655_653	p.A218in_frame_del	0.936:0.920:0.904	NULL	pfam_OTU,pfscan_OTU	-	no_errors	OTUD4	HGNC	ENSG00000164164				103	0	0	76	10	11.6279
SH3D19	0	genome.wustl.edu	37	4	152069114	152069114	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	152069114	152069114	G	-	DEL	SH3D19	ENST00000304527	human	ensembl	74_37	-1	known	frame_shift_del	c.1202	p.P401fs	1.000	superfamily_SH3_domain	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_p67phox,prints_SH3_domain	-	no_errors	SH3D19	HGNC	ENSG00000109686				77	0	0	53	11	17.1875
FGFBP2	0	genome.wustl.edu	37	4	15964150	15964152	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	15964150	15964152	CTT	-	DEL	FGFBP2	ENST00000259989	human	ensembl	74_37	-1	known	in_frame_del	c.603_601	p.K201in_frame_del	0.063:0.037:0.011	pfam_FGF1-bd	pfam_FGF1-bd	-	no_errors	FGFBP2	HGNC	ENSG00000137441				79	0	0	56	11	16.4179
TKTL2	0	genome.wustl.edu	37	4	164394543	164394544	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	164394543	164394544	-	G	INS	TKTL2	ENST00000280605	human	ensembl	74_37	-1	known	frame_shift_ins	c.344_343	p.R115fs	0.447:0.001	pfam_Transketolase_N	pfam_Transketolase_N,pfam_Transketolase-like_Pyr-bd,pfam_Transketolase_C,pfam_DH_E1,superfamily_Transketo_C/Pyr-ferredox_oxred,smart_Transketolase-like_Pyr-bd	-	no_errors	TKTL2	HGNC	ENSG00000151005				69	0	0	62	9	12.6761
TRIM60	0	genome.wustl.edu	37	4	165961428	165961428	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	165961428	165961428	C	-	DEL	TRIM60	ENST00000341062	human	ensembl	74_37	+1	known	frame_shift_del	c.204	p.Q70fs	0.004	NULL	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,pfam_Znf_B-box,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM60	HGNC	ENSG00000176979				94	0	0	83	21	20.1923
SH3RF1	0	genome.wustl.edu	37	4	170057551	170057551	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	170057551	170057551	G	-	DEL	SH3RF1	ENST00000284637	human	ensembl	74_37	-1	known	frame_shift_del	c.986	p.P329fs	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Znf_C3HC4_RING-type,superfamily_SH3_domain,smart_Znf_RING,smart_SH3_domain,pfscan_SH3_domain,pfscan_Znf_RING,prints_p67phox,prints_SH3_domain	-	no_errors	SH3RF1	HGNC	ENSG00000154447				132	0	0	114	16	12.3077
SH3BP2	0	genome.wustl.edu	37	4	2831652	2831652	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	2831652	2831652	C	-	DEL	SH3BP2	ENST00000503393	human	ensembl	74_37	+1	known	frame_shift_del	c.1190	p.R399fs	0.989	NULL	pfam_Pleckstrin_homology,pfam_SH2,smart_Pleckstrin_homology,smart_SH2,pfscan_Pleckstrin_homology,pfscan_SH2	-	no_errors	SH3BP2	HGNC	ENSG00000087266				69	0	0	55	4	6.77966
RGS12	0	genome.wustl.edu	37	4	3430399	3430399	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	3430399	3430399	A	-	DEL	RGS12	ENST00000344733	human	ensembl	74_37	+1	known	frame_shift_del	c.3526	p.K1178fs	1.000	NULL	pfam_Raf-like_ras-bd,pfam_RGS_dom,pfam_PDZ,pfam_GoLoco_motif,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_PTB/PI_dom,smart_Regulat_G_prot_signal_superfam,smart_Raf-like_ras-bd,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_PDZ,pfscan_PTB/PI_dom,pfscan_Raf-like_ras-bd,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS12	HGNC	ENSG00000159788				100	0	0	85	16	15.8416
UGDH	0	genome.wustl.edu	37	4	39505575	39505575	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	39505575	39505575	T	-	DEL	UGDH	ENST00000316423	human	ensembl	74_37	-1	known	frame_shift_del	c.1294	p.M432fs	1.000	pfam_UDP-Glc/GDP-Man_DH_C,superfamily_UDP-Glc/GDP-Man_DH_C,tigrfam_UDP-Glc/GDP-Man	pfam_UDP-Glc/GDP-Man_DH_N,pfam_UDP-Glc/GDP-Man_DH_C,pfam_UDP-Glc/GDP-Man_DH_dimer,superfamily_UDP-Glc/GDP-Man_DH_C,superfamily_6-PGluconate_DH_C-like,tigrfam_UDP-Glc/GDP-Man	-	no_errors	UGDH	HGNC	ENSG00000109814				47	0	0	50	8	13.7931
UGDH	0	genome.wustl.edu	37	4	39515753	39515753	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	39515753	39515753	A	-	DEL	UGDH	ENST00000316423	human	ensembl	74_37	-1	known	frame_shift_del	c.214	p.S72fs	1.000	pfam_UDP-Glc/GDP-Man_DH_N,tigrfam_UDP-Glc/GDP-Man	pfam_UDP-Glc/GDP-Man_DH_N,pfam_UDP-Glc/GDP-Man_DH_C,pfam_UDP-Glc/GDP-Man_DH_dimer,superfamily_UDP-Glc/GDP-Man_DH_C,superfamily_6-PGluconate_DH_C-like,tigrfam_UDP-Glc/GDP-Man	-	no_errors	UGDH	HGNC	ENSG00000109814				107	0	0	103	9	8.03571
ENSG00000221415	0	genome.wustl.edu	37	4	49200238	49200239	+	RNA	DEL	TC	TC	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	49200238	49200239	TC	-	DEL	ENSG00000221415	ENST00000408488	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.019:0.022	-	-	-	no_errors	AC118282.1	Clone_based_ensembl_gene	ENSG00000221415				8	0	0	2	4	66.6667
FIP1L1	0	genome.wustl.edu	37	4	54319248	54319249	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	54319248	54319249	AG	-	DEL	FIP1L1	ENST00000337488	human	ensembl	74_37	+1	known	frame_shift_del	c.1447_1448	p.E486fs	0.975:0.991	NULL	pfam_Fip1	-	no_errors	FIP1L1	HGNC	ENSG00000145216				70	0	0	79	13	14.1304
SLC10A6	0	genome.wustl.edu	37	4	87769942	87769943	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	87769942	87769943	-	C	INS	SLC10A6	ENST00000273905	human	ensembl	74_37	-1	known	frame_shift_ins	c.327_326	p.T110fs	0.221:1.000	pfam_BilAc/Na_symport,tigrfam_Bil_ac_transpt	pfam_BilAc/Na_symport,tigrfam_Bil_ac_transpt	-	no_errors	SLC10A6	HGNC	ENSG00000145283				136	0	0	107	11	9.32203
HERC5	0	genome.wustl.edu	37	4	89380513	89380514	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	89380513	89380514	-	A	INS	HERC5	ENST00000264350	human	ensembl	74_37	+1	known	frame_shift_ins	c.281_282	p.N96fs	0.990:0.980	superfamily_RCC1/BLIP-II	pfam_HECT,pfam_Reg_chr_condens,superfamily_HECT,superfamily_RCC1/BLIP-II,superfamily_Haem_Oase-like_multi-hlx,smart_HECT,pfscan_HECT,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	HERC5	HGNC	ENSG00000138646				114	0	0	96	18	15.7895
STPG2	0	genome.wustl.edu	37	4	99027105	99027105	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	4	99027105	99027105	T	-	DEL	STPG2	ENST00000295268	human	ensembl	74_37	-1	known	frame_shift_del	c.611	p.K204fs	1.000	NULL	NULL	-	no_errors	STPG2	HGNC	ENSG00000163116				35	0	0	41	5	10.8696
FBN2	0	genome.wustl.edu	37	5	127637177	127637177	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	127637177	127637177	A	-	DEL	FBN2	ENST00000262464	human	ensembl	74_37	-1	known	frame_shift_del	c.5943	p.F1981fs	1.000	pirsf_FBN,pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pirsf_FBN,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Cadherin-like,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	FBN2	HGNC	ENSG00000138829				116	0	0	104	24	18.75
DNAH5	0	genome.wustl.edu	37	5	13701426	13701426	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	13701426	13701426	A	-	DEL	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	frame_shift_del	c.13458	p.F4486fs	1.000	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				182	0	0	145	18	11.0429
PSD2	0	genome.wustl.edu	37	5	139193288	139193288	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	139193288	139193288	G	-	DEL	PSD2	ENST00000274710	human	ensembl	74_37	+1	known	frame_shift_del	c.766	p.D258fs	0.076	NULL	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom,prints_PH_dom-spectrin-type	-	no_errors	PSD2	HGNC	ENSG00000146005				23	0	0	14	2	12.5
PCDHA7	0	genome.wustl.edu	37	5	140215405	140215405	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	140215405	140215405	G	-	DEL	PCDHA7	ENST00000525929	human	ensembl	74_37	+1	known	frame_shift_del	c.1437	p.D481fs	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA7	HGNC	ENSG00000204963				86	0	0	52	4	7.14286
TCERG1	0	genome.wustl.edu	37	5	145883504	145883505	+	Frame_Shift_Ins	INS	-	-	GA			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	145883504	145883505	-	GA	INS	TCERG1	ENST00000296702	human	ensembl	74_37	+1	known	frame_shift_ins	c.2665_2666	p.E893fs	1.000:1.000	superfamily_FF_domain	pfam_FF_domain,pfam_WW_dom,superfamily_FF_domain,superfamily_WW_dom,smart_WW_dom,smart_FF_domain,pfscan_WW_dom	-	no_errors	TCERG1	HGNC	ENSG00000113649				182	0	0	154	16	9.41176
SLC6A7	0	genome.wustl.edu	37	5	149581961	149581961	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	149581961	149581961	G	-	DEL	SLC6A7	ENST00000230671	human	ensembl	74_37	+1	known	frame_shift_del	c.910	p.L306fs	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A7	HGNC	ENSG00000011083				106	0	0	83	14	14.433
PWWP2A	0	genome.wustl.edu	37	5	159520656	159520656	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	159520656	159520656	T	-	DEL	PWWP2A	ENST00000307063	human	ensembl	74_37	-1	known	frame_shift_del	c.1001	p.K334fs	1.000	NULL	pfam_PWWP_dom,smart_PWWP_dom,pfscan_PWWP_dom	-	no_errors	PWWP2A	HGNC	ENSG00000170234				67	0	0	55	14	20.2899
ADAMTS2	0	genome.wustl.edu	37	5	178699931	178699931	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	178699931	178699931	C	-	DEL	ADAMTS2	ENST00000251582	human	ensembl	74_37	-1	known	frame_shift_del	c.669	p.P224fs	0.001	prints_Pept_M12B_ADAM-TS2	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS2,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS2	HGNC	ENSG00000087116				39	0	0	26	5	16.129
CDH12	0	genome.wustl.edu	37	5	22078600	22078600	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	22078600	22078600	A	-	DEL	CDH12	ENST00000382254	human	ensembl	74_37	-1	known	frame_shift_del	c.186	p.F62fs	1.000	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH12	HGNC	ENSG00000154162				134	0	0	131	14	9.65517
IL7R	0	genome.wustl.edu	37	5	35874637	35874637	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	35874637	35874637	A	-	DEL	IL7R	ENST00000303115	human	ensembl	74_37	+1	known	frame_shift_del	c.793	p.R267fs	0.967	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3	-	no_errors	IL7R	HGNC	ENSG00000168685				86	0	0	67	13	16.25
C5orf42	0	genome.wustl.edu	37	5	37182875	37182875	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	37182875	37182875	T	-	DEL	C5orf42	ENST00000425232	human	ensembl	74_37	-1	known	frame_shift_del	c.5408	p.N1803fs	0.004	NULL	superfamily_Quino_amine_DH_bsu	-	no_errors	C5orf42	HGNC	ENSG00000197603				30	0	0	29	7	19.4444
OSMR	0	genome.wustl.edu	37	5	38923329	38923329	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	38923329	38923329	A	-	DEL	OSMR	ENST00000274276	human	ensembl	74_37	+1	known	frame_shift_del	c.1843	p.T617fs	0.981	pfscan_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	OSMR	HGNC	ENSG00000145623				54	0	0	54	7	11.4754
RICTOR	0	genome.wustl.edu	37	5	38960027	38960028	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	38960027	38960028	-	T	INS	RICTOR	ENST00000296782	human	ensembl	74_37	-1	known	frame_shift_ins	c.1905_1904	p.N635fs	0.998:0.999	NULL	superfamily_ARM-type_fold	-	no_errors	RICTOR	HGNC	ENSG00000164327				165	0	0	115	13	10.1562
CARD6	0	genome.wustl.edu	37	5	40853094	40853094	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	40853094	40853094	T	-	DEL	CARD6	ENST00000254691	human	ensembl	74_37	+1	known	frame_shift_del	c.1660	p.F556fs	0.998	NULL	pfam_CARD,superfamily_DEATH-like_dom,smart_CARD,pfscan_CARD	-	no_errors	CARD6	HGNC	ENSG00000132357				156	0	0	121	19	13.5714
ITGA2	0	genome.wustl.edu	37	5	52369065	52369066	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	52369065	52369066	-	T	INS	ITGA2	ENST00000296585	human	ensembl	74_37	+1	known	frame_shift_ins	c.2547_2548	p.A851fs	1.000:1.000	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA2	HGNC	ENSG00000164171				215	0	0	212	27	11.2971
MOCS2	0	genome.wustl.edu	37	5	52402940	52402940	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	52402940	52402940	G	-	DEL	MOCS2	ENST00000396954	human	ensembl	74_37	-1	known	frame_shift_del	c.65	p.P22fs	1.000	NULL	pfam_Mopterin_biosynth_MoaE,superfamily_Mopterin_biosynth_MoaE	-	no_errors	MOCS2	HGNC	ENSG00000164172				84	0	0	61	13	17.5676
DHX29	0	genome.wustl.edu	37	5	54586096	54586096	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	54586096	54586096	T	-	DEL	DHX29	ENST00000251636	human	ensembl	74_37	-1	known	frame_shift_del	c.857	p.N286fs	1.000	NULL	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX29	HGNC	ENSG00000067248				70	0	0	70	12	14.6341
PLK2	0	genome.wustl.edu	37	5	57753012	57753012	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	57753012	57753012	A	-	DEL	PLK2	ENST00000274289	human	ensembl	74_37	-1	known	frame_shift_del	c.1004	p.L335fs	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_POLO_box_duplicated_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_dom	-	no_errors	PLK2	HGNC	ENSG00000145632				59	0	0	35	9	20.4545
ADAMTS6	0	genome.wustl.edu	37	5	64766684	64766684	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	64766684	64766684	A	-	DEL	ADAMTS6	ENST00000381055	human	ensembl	74_37	-1	known	frame_shift_del	c.383	p.L128fs	1.000	pfam_Peptidase_M12B_N	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS6	HGNC	ENSG00000049192				58	0	0	66	8	10.8108
NAIP	0	genome.wustl.edu	37	5	70307103	70307104	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	70307103	70307104	-	G	INS	NAIP	ENST00000194097	human	ensembl	74_37	-1	known	frame_shift_ins	c.667_666	p.K222fs	0.999:0.998	pfam_BIR,smart_BIR,pfscan_BIR	pfam_BIR,superfamily_P-loop_NTPase,smart_BIR,smart_AAA+_ATPase,pfscan_NACHT_NTPase,pfscan_BIR	-	no_errors	NAIP	HGNC	ENSG00000249437				44	0	0	33	7	17.5
BDP1	0	genome.wustl.edu	37	5	70791221	70791221	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	70791221	70791221	A	-	DEL	BDP1	ENST00000358731	human	ensembl	74_37	+1	known	frame_shift_del	c.1785	p.N597fs	0.003	NULL	superfamily_Homeodomain-like,smart_SANT/Myb	-	no_errors	BDP1	HGNC	ENSG00000145734				104	0	0	107	22	17.0543
MAP1B	0	genome.wustl.edu	37	5	71495076	71495077	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	71495076	71495077	-	C	INS	MAP1B	ENST00000296755	human	ensembl	74_37	+1	known	frame_shift_ins	c.5894_5895	p.E1968fs	0.926:0.932	pfam_MAP1B_neuraxin	pfam_MAP1B_neuraxin	-	no_errors	MAP1B	HGNC	ENSG00000131711				107	0	0	105	11	9.48276
GCNT4	0	genome.wustl.edu	37	5	74324982	74324983	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	5	74324982	74324983	-	G	INS	GCNT4	ENST00000322348	human	ensembl	74_37	-1	known	frame_shift_ins	c.881_880	p.H294fs	0.920:0.913	pfam_Glyco_trans_14	pfam_Glyco_trans_14	-	no_errors	GCNT4	HGNC	ENSG00000176928				103	0	0	91	6	6.18557
WISP3	0	genome.wustl.edu	37	6	112389434	112389434	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	112389434	112389434	A	-	DEL	WISP3	ENST00000361714	human	ensembl	74_37	+1	known	frame_shift_del	c.670	p.K226fs	1.000	superfamily_Thrombospondin_1_rpt,pirsf_IGFBP_CNN,pfscan_Thrombospondin_1_rpt	pfam_IGFBP-like,pfam_Cys_knot,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_Thrombospondin_1_rpt,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C,pfscan_Thrombospondin_1_rpt	-	no_errors	WISP3	HGNC	ENSG00000112761				85	0	0	48	14	22.5806
EDN1	0	genome.wustl.edu	37	6	12294303	12294303	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	12294303	12294303	T	-	DEL	EDN1	ENST00000379375	human	ensembl	74_37	+1	known	frame_shift_del	c.363	p.C123fs	0.964	smart_Endothln-like_toxin	pfam_Endothln-like_toxin,smart_Endothln-like_toxin,prints_Bibrotoxin/Sarafotoxin-D	-	no_errors	EDN1	HGNC	ENSG00000078401				125	0	0	107	27	20.1493
TRDN	0	genome.wustl.edu	37	6	123786033	123786033	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	123786033	123786033	A	-	DEL	TRDN	ENST00000546248	human	ensembl	74_37	-1	known	frame_shift_del	c.889	p.S297fs	0.000	NULL	pfam_Asp-B-hydro/Triadin_dom	-	no_errors	TRDN	HGNC	ENSG00000186439				9	0	0	7	3	30
NCOA7	0	genome.wustl.edu	37	6	126176317	126176317	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	126176317	126176317	A	-	DEL	NCOA7	ENST00000368357	human	ensembl	74_37	+1	known	frame_shift_del	c.202	p.K70fs	1.000	NULL	pfam_TLDc,pfam_LysM_dom,pfam_GRAM,smart_LysM_dom,smart_TLDc	-	no_errors	NCOA7	HGNC	ENSG00000111912				326	0	0	327	32	8.91365
THEMIS	0	genome.wustl.edu	37	6	128134568	128134568	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	128134568	128134568	T	-	DEL	THEMIS	ENST00000543064	human	ensembl	74_37	-1	known	frame_shift_del	c.1218	p.V407fs	0.397	NULL	NULL	-	no_errors	THEMIS	HGNC	ENSG00000172673				77	0	0	78	13	14.2857
AKAP7	0	genome.wustl.edu	37	6	131481276	131481276	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	131481276	131481276	A	-	DEL	AKAP7	ENST00000368123	human	ensembl	74_37	+1	known	frame_shift_del	c.163	p.K57fs	0.449	pfam_Kinase-A_anchor_nucl_local_sig	pfam_Kinase-A_anchor_nucl_local_sig,pfam_Kinase-A_anchor_RI-RII-bd_dom,superfamily_RNA_ligase/cNuc_Pdiesterase	-	no_errors	AKAP7	HGNC	ENSG00000118507				84	0	0	79	14	15.0538
MYB	0	genome.wustl.edu	37	6	135518338	135518338	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	135518338	135518338	A	-	DEL	MYB	ENST00000341911	human	ensembl	74_37	+1	known	frame_shift_del	c.1443	p.K483fs	0.998	NULL	pfam_C-myb_C,pfam_SANT/Myb,pfam_Tscrpt_reg_Wos2-domain,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MYB	HGNC	ENSG00000118513				78	0	0	66	6	8.33333
AHI1	0	genome.wustl.edu	37	6	135811861	135811862	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	135811861	135811862	-	T	INS	AHI1	ENST00000265602	human	ensembl	74_37	-1	known	frame_shift_ins	c.35_34	p.T12fs	1.000:1.000	NULL	pfam_WD40_repeat,pfam_SH3_domain,pfam_SH3_2,superfamily_WD40_repeat_dom,superfamily_SH3_domain,smart_WD40_repeat,smart_SH3_domain,pfscan_SH3_domain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_SH3_domain	-	no_errors	AHI1	HGNC	ENSG00000135541				136	0	0	132	16	10.8108
CCDC28A	0	genome.wustl.edu	37	6	139097330	139097331	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	139097330	139097331	AA	-	DEL	CCDC28A	ENST00000332797	human	ensembl	74_37	+1	known	frame_shift_del	c.343_344	p.N117fs	1.000:1.000	NULL	NULL	-	no_errors	CCDC28A	HGNC	ENSG00000024862				133	0	0	95	15	13.6364
HECA	0	genome.wustl.edu	37	6	139488147	139488147	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	139488147	139488147	G	-	DEL	HECA	ENST00000367658	human	ensembl	74_37	+1	known	frame_shift_del	c.998	p.G335fs	1.000	superfamily_Glycoside_hydrolase_SF	superfamily_Glycoside_hydrolase_SF	-	no_errors	HECA	HGNC	ENSG00000112406				77	0	0	44	8	15.3846
GPR126	0	genome.wustl.edu	37	6	142691377	142691377	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	142691377	142691377	A	-	DEL	GPR126	ENST00000367609	human	ensembl	74_37	+1	known	frame_shift_del	c.516	p.S174fs	0.986	pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin	pfam_GPCR_2_secretin-like,pfam_CUB_dom,pfam_GPS_dom,pfam_Pentaxin,superfamily_CUB_dom,superfamily_ConA-like_lec_gl_sf,smart_CUB_dom,smart_Pentaxin,smart_GPS_dom,pfscan_CUB_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR126	HGNC	ENSG00000112414				58	0	0	39	10	20.4082
SYNJ2	0	genome.wustl.edu	37	6	158508009	158508009	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	158508009	158508009	C	-	DEL	SYNJ2	ENST00000355585	human	ensembl	74_37	+1	known	frame_shift_del	c.3331	p.P1113fs	1.000	NULL	pfam_Syja_N,pfam_DUF1866,pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc,pfscan_RRM_dom,pfscan_Syja_N	-	no_errors	SYNJ2	HGNC	ENSG00000078269				26	0	0	22	4	15.3846
IGF2R	0	genome.wustl.edu	37	6	160485488	160485488	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	160485488	160485488	G	-	DEL	IGF2R	ENST00000356956	human	ensembl	74_37	+1	known	frame_shift_del	c.3942	p.D1317fs	0.125	pfam_CIMR,superfamily_Man6P_isomerase_rcpt-bd_dom	pfam_CIMR,pfam_FN_type2_col-bd,superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Kringle-like,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	-	no_errors	IGF2R	HGNC	ENSG00000197081				153	0	0	98	16	14.0351
ATXN1	0	genome.wustl.edu	37	6	16307055	16307055	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	16307055	16307055	A	-	DEL	ATXN1	ENST00000244769	human	ensembl	74_37	-1	known	frame_shift_del	c.1953	p.F651fs	1.000	pfam_Ataxin-1_HBP1,superfamily_Ataxin-1_HBP1,smart_Ataxin_AXH_dom,pfscan_Ataxin-1_HBP1	pfam_Ataxin-1_HBP1,pfam_Capicua_tscrpt_rep_mod,superfamily_Ataxin-1_HBP1,smart_Ataxin_AXH_dom,pfscan_Ataxin-1_HBP1	-	no_errors	ATXN1	HGNC	ENSG00000124788				127	0	0	99	17	14.6552
ATXN1	0	genome.wustl.edu	37	6	16328093	16328093	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	16328093	16328093	G	-	DEL	ATXN1	ENST00000244769	human	ensembl	74_37	-1	known	frame_shift_del	c.449	p.P150fs	0.997	NULL	pfam_Ataxin-1_HBP1,pfam_Capicua_tscrpt_rep_mod,superfamily_Ataxin-1_HBP1,smart_Ataxin_AXH_dom,pfscan_Ataxin-1_HBP1	-	no_errors	ATXN1	HGNC	ENSG00000124788				99	0	0	55	8	12.6984
FGFR1OP	0	genome.wustl.edu	37	6	167413569	167413569	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	167413569	167413569	T	-	DEL	FGFR1OP	ENST00000366847	human	ensembl	74_37	+1	known	frame_shift_del	c.124	p.L43fs	1.000	NULL	pfam_FOP_dimerisation-dom_N,pfscan_LisH_dimerisation	-	no_errors	FGFR1OP	HGNC	ENSG00000213066				60	0	0	69	8	10.3896
FAM120B	0	genome.wustl.edu	37	6	170627589	170627590	+	In_Frame_Ins	INS	-	-	CTGAACCCAGGCAAGAAGTTCCCACGTGTTCAGACC			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	170627589	170627590	-	CTGAACCCAGGCAAGAAGTTCCCACGTGTTCAGACC	INS	FAM120B	ENST00000537664	human	ensembl	74_37	+1	known	in_frame_ins	c.1180_1181	p.398in_frame_insQEVPTCSDPEPR	0.003:0.006	NULL	NULL	-	no_errors	FAM120B	HGNC	ENSG00000112584				339	0	0	258	38	12.8378
NHLRC1	0	genome.wustl.edu	37	6	18122226	18122226	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	18122226	18122226	A	-	DEL	NHLRC1	ENST00000340650	human	ensembl	74_37	-1	known	frame_shift_del	c.612	p.F204fs	0.001	pfscan_NHL_repeat_subgr	smart_Znf_RING,pfscan_NHL_repeat_subgr,pfscan_Znf_RING	-	no_errors	NHLRC1	HGNC	ENSG00000187566				55	0	0	51	6	10.5263
HIST1H1A	0	genome.wustl.edu	37	6	26017448	26017448	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	26017448	26017448	T	-	DEL	HIST1H1A	ENST00000244573	human	ensembl	74_37	-1	known	frame_shift_del	c.513	p.K171fs	0.866	NULL	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15,prints_Histone_H5	-	no_errors	HIST1H1A	HGNC	ENSG00000124610				275	0	0	207	16	7.17489
C6orf25	0	genome.wustl.edu	37	6	31692529	31692529	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	31692529	31692529	C	-	DEL	C6orf25	ENST00000375809	human	ensembl	74_37	+1	known	frame_shift_del	c.548	p.P185fs	0.995	NULL	NULL	-	no_errors	C6orf25	HGNC	ENSG00000204420				53	0	0	49	12	19.6721
GPSM3	0	genome.wustl.edu	37	6	32159229	32159230	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	32159229	32159230	-	C	INS	GPSM3	ENST00000375040	human	ensembl	74_37	-1	known	frame_shift_ins	c.397_396	p.Q132fs	0.998:0.959	smart_GoLoco_motif,pfscan_GoLoco_motif	pfam_GoLoco_motif,smart_GoLoco_motif,pfscan_GoLoco_motif	-	no_errors	GPSM3	HGNC	ENSG00000213654				50	0	0	40	6	13.0435
C6orf10	0	genome.wustl.edu	37	6	32261771	32261771	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	32261771	32261771	A	-	DEL	C6orf10	ENST00000447241	human	ensembl	74_37	-1	known	frame_shift_del	c.679	p.S227fs	0.475	NULL	NULL	-	no_errors	C6orf10	HGNC	ENSG00000204296				75	0	0	81	11	11.9565
COL11A2	0	genome.wustl.edu	37	6	33133481	33133481	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	33133481	33133481	C	-	DEL	COL11A2	ENST00000341947	human	ensembl	74_37	-1	known	frame_shift_del	c.4595	p.G1532fs	0.916	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A2	HGNC	ENSG00000204248				60	0	0	46	6	11.5385
TAPBP	0	genome.wustl.edu	37	6	33273073	33273073	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	33273073	33273073	G	-	DEL	TAPBP	ENST00000426633	human	ensembl	74_37	-1	known	frame_shift_del	c.561	p.T188fs	0.055	NULL	pfam_Ig_C1-set,pfscan_Ig-like_dom,prints_Tapasin	-	no_errors	TAPBP	HGNC	ENSG00000231925				28	0	0	22	8	26.6667
ITPR3	0	genome.wustl.edu	37	6	33608311	33608312	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	33608311	33608312	-	C	INS	ITPR3	ENST00000374316	human	ensembl	74_37	+1	known	frame_shift_ins	c.140_141	p.K50fs	1.000:1.000	pfam_Ins145_P3_rcpt,prints_InsP3_rcpt-bd	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR3	HGNC	ENSG00000096433				95	0	0	68	6	8.10811
MOCS1	0	genome.wustl.edu	37	6	39893563	39893563	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	39893563	39893563	C	-	DEL	MOCS1	ENST00000340692	human	ensembl	74_37	-1	known	frame_shift_del	c.277	p.V93fs	0.999	pfam_rSAM,smart_Elp3/MiaB/NifB,tigrfam_MoaA	pfam_Mopterin_CF_biosynth-C_dom,pfam_Mob_synth_C,pfam_rSAM,superfamily_Mopterin_CF_biosynth-C_dom,smart_Elp3/MiaB/NifB,tigrfam_MoaA,tigrfam_Mo_CF_biosynth-C	-	no_errors	MOCS1	HGNC	ENSG00000124615				44	0	0	38	8	17.3913
PRPF4B	0	genome.wustl.edu	37	6	4031881	4031881	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	4031881	4031881	A	-	DEL	PRPF4B	ENST00000337659	human	ensembl	74_37	+1	known	frame_shift_del	c.130	p.K46fs	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	PRPF4B	HGNC	ENSG00000112739				75	0	0	62	5	7.46269
CUL9	0	genome.wustl.edu	37	6	43172148	43172149	+	Frame_Shift_Ins	INS	-	-	AG			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	43172148	43172149	-	AG	INS	CUL9	ENST00000252050	human	ensembl	74_37	+1	known	frame_shift_ins	c.4210_4211	p.T1407fs	0.729:0.683	NULL	pfam_Cullin_N,pfam_CPH_domain,pfam_Znf_C6HC,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,superfamily_UBA-like,smart_Cullin_neddylation_domain,smart_Znf_C6HC,pfscan_Znf_RING,pfscan_Cullin_homology	-	no_errors	CUL9	HGNC	ENSG00000112659				168	0	0	104	15	12.605
EFHC1	0	genome.wustl.edu	37	6	52334208	52334208	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	52334208	52334208	A	-	DEL	EFHC1	ENST00000371068	human	ensembl	74_37	+1	known	frame_shift_del	c.1215	p.D408fs	0.140	NULL	pfam_DUF1126,smart_Uncharacterised_DM10,pfscan_EF_hand_dom	-	no_errors	EFHC1	HGNC	ENSG00000096093				111	0	0	99	6	5.71429
DST	0	genome.wustl.edu	37	6	56382365	56382365	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	56382365	56382365	T	-	DEL	DST	ENST00000370754	human	ensembl	74_37	-1	known	frame_shift_del	c.18090	p.K6030fs	1.000	pfam_Spectrin_repeat,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	DST	HGNC	ENSG00000151914				36	0	0	46	10	17.8571
COL9A1	0	genome.wustl.edu	37	6	70990708	70990708	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	70990708	70990708	G	-	DEL	COL9A1	ENST00000357250	human	ensembl	74_37	-1	known	frame_shift_del	c.911	p.P304fs	0.999	pfam_Collagen	pfam_Collagen,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	-	no_errors	COL9A1	HGNC	ENSG00000112280				25	0	0	19	6	24
OGFRL1	0	genome.wustl.edu	37	6	72006380	72006381	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	72006380	72006381	-	A	INS	OGFRL1	ENST00000370435	human	ensembl	74_37	+1	known	frame_shift_ins	c.552_553	p.T186fs	1.000:1.000	pfam_OGF_rcpt	pfam_OGF_rcpt	-	no_errors	OGFRL1	HGNC	ENSG00000119900				52	0	0	47	4	7.84314
TTK	0	genome.wustl.edu	37	6	80751897	80751897	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	80751897	80751897	A	-	DEL	TTK	ENST00000369798	human	ensembl	74_37	+1	known	frame_shift_del	c.2552	p.R854fs	0.102	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TTK	HGNC	ENSG00000112742				63	0	0	41	17	29.3103
RRAGD	0	genome.wustl.edu	37	6	90097083	90097083	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	90097083	90097083	A	-	DEL	RRAGD	ENST00000369415	human	ensembl	74_37	-1	known	frame_shift_del	c.375	p.F125fs	0.997	pfam_Gtr1_RagA,pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase	pfam_Gtr1_RagA,pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase	-	no_errors	RRAGD	HGNC	ENSG00000025039				181	0	0	194	19	8.92019
MDN1	0	genome.wustl.edu	37	6	90368572	90368578	+	Frame_Shift_Del	DEL	TCCTCTT	TCCTCTT	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	TCCTCTT	TCCTCTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	6	90368572	90368578	TCCTCTT	-	DEL	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	frame_shift_del	c.14778_14772	p.G4926fs	0.629:0.001:0.000:0.000:0.000:0.002:0.002	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				159	0	0	130	11	7.80142
SRRT	0	genome.wustl.edu	37	7	100481744	100481744	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	100481744	100481744	G	-	DEL	SRRT	ENST00000388793	human	ensembl	74_37	+1	known	frame_shift_del	c.641	p.A216fs	0.999	pfam_DUF3546	pfam_Arsenite-R_2,pfam_DUF3546	-	no_errors	SRRT	HGNC	ENSG00000087087				66	0	0	38	6	13.6364
BCAP29	0	genome.wustl.edu	37	7	107234539	107234540	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	107234539	107234540	-	T	INS	BCAP29	ENST00000379119	human	ensembl	74_37	+1	known	frame_shift_ins	c.333_334	p.W113fs	0.995:1.000	pfam_Bap31	pfam_Bap31	-	no_errors	BCAP29	HGNC	ENSG00000075790				76	0	0	80	8	9.09091
IFRD1	0	genome.wustl.edu	37	7	112108039	112108039	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	112108039	112108039	T	-	DEL	IFRD1	ENST00000005558	human	ensembl	74_37	+1	known	frame_shift_del	c.910	p.Y306fs	1.000	pfam_Interferon-rel_develop_reg_N,superfamily_ARM-type_fold	pfam_Interferon-rel_develop_reg_N,pfam_Interferon-rel_develop_reg_C,superfamily_ARM-type_fold	-	no_errors	IFRD1	HGNC	ENSG00000006652				69	0	0	65	11	14.4737
C7orf60	0	genome.wustl.edu	37	7	112535733	112535733	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	112535733	112535733	T	-	DEL	C7orf60	ENST00000297145	human	ensembl	74_37	-1	known	frame_shift_del	c.364	p.R122fs	1.000	NULL	pfam_DUF3321	-	no_errors	C7orf60	HGNC	ENSG00000164603				69	0	0	88	11	11.1111
SCIN	0	genome.wustl.edu	37	7	12684234	12684235	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	12684234	12684235	-	A	INS	SCIN	ENST00000297029	human	ensembl	74_37	+1	known	frame_shift_ins	c.1785_1786	p.D597fs	0.994:1.000	prints_Villin/Gelsolin	pfam_Gelsolin_dom,smart_Villin/Gelsolin,prints_Villin/Gelsolin	-	no_errors	SCIN	HGNC	ENSG00000006747				27	0	0	34	7	17.0732
AKR1B10	0	genome.wustl.edu	37	7	134222396	134222396	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	134222396	134222396	A	-	DEL	AKR1B10	ENST00000359579	human	ensembl	74_37	+1	known	frame_shift_del	c.724	p.T244fs	1.000	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	-	no_errors	AKR1B10	HGNC	ENSG00000198074				104	0	0	90	14	13.4615
PTN	0	genome.wustl.edu	37	7	136938377	136938377	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	136938377	136938377	T	-	DEL	PTN	ENST00000348225	human	ensembl	74_37	-1	known	frame_shift_del	c.123	p.V42fs	1.000	pfam_PTN/MK_N_dom,superfamily_PTN/MK_diS	pfam_PTN/MK_C_dom,pfam_PTN/MK_N_dom,superfamily_PTN/MK_diS,smart_Midkine_heparin-bd_GF,prints_Midkine_heparin-bd_GF	-	no_errors	PTN	HGNC	ENSG00000105894				25	0	0	17	6	26.087
ETV1	0	genome.wustl.edu	37	7	13975473	13975473	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	13975473	13975473	G	-	DEL	ETV1	ENST00000405218	human	ensembl	74_37	-1	known	frame_shift_del	c.414	p.T139fs	0.466	pfam_ETS_PEA3_N	pfam_ETS_PEA3_N,pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ETV1	HGNC	ENSG00000006468				66	0	0	73	6	7.59494
OR9A4	0	genome.wustl.edu	37	7	141619203	141619203	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	141619203	141619203	T	-	DEL	OR9A4	ENST00000548136	human	ensembl	74_37	+1	known	frame_shift_del	c.528	p.C179fs	0.509	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR9A4	HGNC	ENSG00000258083				162	0	0	182	48	20.8696
ASIC3	0	genome.wustl.edu	37	7	150746179	150746180	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	150746179	150746180	-	T	INS	ASIC3	ENST00000297512	human	ensembl	74_37	+1	known	frame_shift_ins	c.207_208	p.H70fs	0.999:1.000	pfam_Na+channel_ASC	pfam_Na+channel_ASC,prints_Na+channel_ASC,tigrfam_EnaC	-	no_errors	ASIC3	HGNC	ENSG00000213199				59	0	0	49	6	10.9091
FKBP9	0	genome.wustl.edu	37	7	33014265	33014265	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	33014265	33014265	A	-	DEL	FKBP9	ENST00000538336	human	ensembl	74_37	+1	known	frame_shift_del	c.417	p.G141fs	0.179	pfam_PPIase_FKBP_dom,pfscan_PPIase_FKBP_dom	pfam_PPIase_FKBP_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP9	HGNC	ENSG00000122642				176	0	0	150	20	11.7647
SEPT7	0	genome.wustl.edu	37	7	35942747	35942747	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	35942747	35942747	A	-	DEL	SEPT7	ENST00000399034	human	ensembl	74_37	+1	known	frame_shift_del	c.1199	p.K401fs	1.000	pirsf_Septin	pfam_Cell_div_GTP-bd,superfamily_P-loop_NTPase,pirsf_Septin,prints_Septin7	-	no_errors	SEPT7	HGNC	ENSG00000122545				37	0	0	38	8	17.3913
ELMO1	0	genome.wustl.edu	37	7	37136300	37136301	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	37136300	37136301	-	T	INS	ELMO1	ENST00000310758	human	ensembl	74_37	-1	known	frame_shift_ins	c.1224_1223	p.H409fs	1.000:1.000	pfam_Engulfment_cell_motility_ELMO	pfam_DUF3361,pfam_Engulfment_cell_motility_ELMO,superfamily_ARM-type_fold	-	no_errors	ELMO1	HGNC	ENSG00000155849				98	0	0	84	7	7.69231
OGDH	0	genome.wustl.edu	37	7	44747227	44747228	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	44747227	44747228	-	C	INS	OGDH	ENST00000222673	human	ensembl	74_37	+1	known	frame_shift_ins	c.2843_2844	p.N950fs	1.000:1.000	pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	pfam_DH_E1,pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	-	no_errors	OGDH	HGNC	ENSG00000105953				142	0	0	113	9	7.37705
ABCA13	0	genome.wustl.edu	37	7	48312265	48312265	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	48312265	48312265	A	-	DEL	ABCA13	ENST00000435803	human	ensembl	74_37	+1	known	frame_shift_del	c.3002	p.Q1001fs	0.995	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869				39	0	0	31	9	22.5
CYTH3	0	genome.wustl.edu	37	7	6204578	6204578	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	6204578	6204578	T	-	DEL	CYTH3	ENST00000350796	human	ensembl	74_37	-1	known	frame_shift_del	c.1197	p.K399fs	1.000	NULL	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom	-	no_errors	CYTH3	HGNC	ENSG00000008256				280	0	0	242	44	15.3846
TMEM60	0	genome.wustl.edu	37	7	77423460	77423460	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	77423460	77423460	T	-	DEL	TMEM60	ENST00000257663	human	ensembl	74_37	-1	known	frame_shift_del	c.231	p.A78fs	0.998	NULL	pfam_TM_Fragile-X-F-assoc	-	no_errors	TMEM60	HGNC	ENSG00000135211				140	0	0	143	18	11.1801
DMTF1	0	genome.wustl.edu	37	7	86817444	86817444	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	86817444	86817444	A	-	DEL	DMTF1	ENST00000331242	human	ensembl	74_37	+1	known	frame_shift_del	c.1238	p.N415fs	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	DMTF1	HGNC	ENSG00000135164				108	0	0	77	16	17.2043
AKAP9	0	genome.wustl.edu	37	7	91603085	91603085	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	91603085	91603085	A	-	DEL	AKAP9	ENST00000359028	human	ensembl	74_37	+1	known	frame_shift_del	c.145	p.K51fs	1.000	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB	-	no_errors	AKAP9	HGNC	ENSG00000127914				117	0	0	93	8	7.92079
ASB4	0	genome.wustl.edu	37	7	95157266	95157266	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	7	95157266	95157266	C	-	DEL	ASB4	ENST00000325885	human	ensembl	74_37	+1	known	frame_shift_del	c.629	p.L212fs	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	-	no_errors	ASB4	HGNC	ENSG00000005981				39	0	0	29	4	12.1212
VPS13B	0	genome.wustl.edu	37	8	100673594	100673595	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	100673594	100673595	CT	-	DEL	VPS13B	ENST00000358544	human	ensembl	74_37	+1	known	frame_shift_del	c.5996_5997	p.L2000fs	1.000:0.984	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549				79	0	0	103	14	11.9658
UBR5	0	genome.wustl.edu	37	8	103289349	103289349	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	103289349	103289349	T	-	DEL	UBR5	ENST00000520539	human	ensembl	74_37	-1	known	frame_shift_del	c.6360	p.E2121fs	0.987	NULL	pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_RCC1/BLIP-II,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin	-	no_errors	UBR5	HGNC	ENSG00000104517				98	0	0	95	26	21.4876
DCAF13	0	genome.wustl.edu	37	8	104439487	104439487	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	104439487	104439487	T	-	DEL	DCAF13	ENST00000519682	human	ensembl	74_37	+1	putative	frame_shift_del	c.619	p.F209fs	0.001	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF13	HGNC	ENSG00000164934				49	0	0	30	22	42.3077
RP1L1	0	genome.wustl.edu	37	8	10470757	10470757	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	10470757	10470757	G	-	DEL	RP1L1	ENST00000382483	human	ensembl	74_37	-1	known	frame_shift_del	c.851	p.P284fs	0.000	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1L1	HGNC	ENSG00000183638				62	0	0	42	8	16
FAM83A	0	genome.wustl.edu	37	8	124221696	124221697	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	124221696	124221697	-	A	INS	FAM83A	ENST00000276699	human	ensembl	74_37	+1	known	frame_shift_ins	c.1064_1065	p.Q358fs	0.000:0.004	NULL	pfam_DUF1669	-	no_errors	FAM83A	HGNC	ENSG00000147689				73	0	0	92	11	10.6796
ATAD2	0	genome.wustl.edu	37	8	124384893	124384893	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	124384893	124384893	T	-	DEL	ATAD2	ENST00000287394	human	ensembl	74_37	-1	known	frame_shift_del	c.354	p.E119fs	0.995	NULL	pfam_ATPase_AAA_core,pfam_Bromodomain,superfamily_P-loop_NTPase,superfamily_Bromodomain,smart_AAA+_ATPase,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	ATAD2	HGNC	ENSG00000156802				142	0	0	162	25	13.369
MTSS1	0	genome.wustl.edu	37	8	125597329	125597329	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	125597329	125597329	T	-	DEL	MTSS1	ENST00000518547	human	ensembl	74_37	-1	known	frame_shift_del	c.459	p.R155fs	1.000	pfam_IRSp53/MIM_homology_IMD	pfam_IRSp53/MIM_homology_IMD,pfscan_WH2_dom	-	no_errors	MTSS1	HGNC	ENSG00000170873				162	0	0	180	26	12.6214
MIR1208	0	genome.wustl.edu	37	8	129162432	129162433	+	RNA	INS	-	-	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	129162432	129162433	-	G	INS	MIR1208	ENST00000408334	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002:0.002	-	-	-	no_errors	MIR1208	HGNC	ENSG00000221261				43	0	0	44	10	18.5185
WISP1	0	genome.wustl.edu	37	8	134237718	134237718	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	134237718	134237718	G	-	DEL	WISP1	ENST00000250160	human	ensembl	74_37	+1	known	frame_shift_del	c.696	p.V234fs	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pirsf_IGFBP_CNN,pfscan_Thrombospondin_1_rpt	pfam_IGFBP-like,pfam_VWF_C,pfam_Cys_knot,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	WISP1	HGNC	ENSG00000104415				88	0	0	44	19	30.1587
SLC39A4	0	genome.wustl.edu	37	8	145637952	145637954	+	In_Frame_Del	DEL	CAG	CAG	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	CAG	CAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	145637952	145637954	CAG	-	DEL	SLC39A4	ENST00000301305	human	ensembl	74_37	-1	known	in_frame_del	c.1914_1912	p.L638in_frame_del	0.995:1.000:1.000	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A4	HGNC	ENSG00000147804				153	0	0	126	28	18.1818
ZNF34	0	genome.wustl.edu	37	8	145999587	145999587	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	145999587	145999587	T	-	DEL	ZNF34	ENST00000343459	human	ensembl	74_37	-1	known	frame_shift_del	c.747	p.K249fs	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF34	HGNC	ENSG00000196378				60	0	0	64	8	11.1111
ZNF34	0	genome.wustl.edu	37	8	145999670	145999670	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	145999670	145999670	T	-	DEL	ZNF34	ENST00000343459	human	ensembl	74_37	-1	known	frame_shift_del	c.664	p.T222fs	0.001	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF34	HGNC	ENSG00000196378				47	0	0	45	6	11.7647
ZNF7	0	genome.wustl.edu	37	8	146067051	146067052	+	Frame_Shift_Ins	INS	-	-	AG			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	146067051	146067052	-	AG	INS	ZNF7	ENST00000325241	human	ensembl	74_37	+1	known	frame_shift_ins	c.559_560	p.G188fs	0.001:0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF7	HGNC	ENSG00000147789				84	0	0	89	10	10.101
DMTN	0	genome.wustl.edu	37	8	21926551	21926552	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	21926551	21926552	-	C	INS	DMTN	ENST00000265800	human	ensembl	74_37	+1	known	frame_shift_ins	c.274_275	p.P95fs	1.000:1.000	NULL	pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin_headpiece,pfscan_Villin_headpiece	-	no_errors	DMTN	HGNC	ENSG00000158856				78	0	0	82	7	7.86517
RAB11FIP1	0	genome.wustl.edu	37	8	37729658	37729660	+	In_Frame_Del	DEL	GGA	GGA	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	GGA	GGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	37729658	37729660	GGA	-	DEL	RAB11FIP1	ENST00000330843	human	ensembl	74_37	-1	known	in_frame_del	c.2662_2660	p.L887in_frame_del	0.000:0.000:0.000	NULL	pfam_Rab-bd_FIP-RBD,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	RAB11FIP1	HGNC	ENSG00000156675				43	0	0	46	7	13.2075
GOT1L1	0	genome.wustl.edu	37	8	37791834	37791834	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	37791834	37791834	T	-	DEL	GOT1L1	ENST00000307599	human	ensembl	74_37	-1	known	frame_shift_del	c.1243	p.T415fs	0.000	NULL	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase,prints_Asp_trans	-	no_errors	GOT1L1	HGNC	ENSG00000169154				99	0	0	122	15	10.9489
KAT6A	0	genome.wustl.edu	37	8	41790600	41790600	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	41790600	41790600	G	-	DEL	KAT6A	ENST00000265713	human	ensembl	74_37	-1	known	frame_shift_del	c.5138	p.P1713fs	1.000	NULL	pfam_MOZ_SAS,pfam_Znf_PHD-finger,superfamily_Acyl_CoA_acyltransferase,superfamily_Znf_FYVE_PHD,smart_Histone_H1/H5_H15,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	KAT6A	HGNC	ENSG00000083168				95	0	0	103	10	8.84956
CYP7B1	0	genome.wustl.edu	37	8	65528706	65528706	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	65528706	65528706	T	-	DEL	CYP7B1	ENST00000310193	human	ensembl	74_37	-1	known	frame_shift_del	c.392	p.N131fs	0.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450	-	no_errors	CYP7B1	HGNC	ENSG00000172817				50	0	0	56	21	27.2727
SULF1	0	genome.wustl.edu	37	8	70514026	70514026	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	70514026	70514026	T	-	DEL	SULF1	ENST00000260128	human	ensembl	74_37	+1	known	frame_shift_del	c.1023	p.F343fs	0.786	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	pfam_Sulfatase,pfam_Extracellular_sulfatase_C,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	-	no_errors	SULF1	HGNC	ENSG00000137573				303	0	0	248	77	23.6923
KCNB2	0	genome.wustl.edu	37	8	73480397	73480397	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	73480397	73480397	A	-	DEL	KCNB2	ENST00000523207	human	ensembl	74_37	+1	known	frame_shift_del	c.428	p.E146fs	1.000	prints_K_chnl_volt-dep_Kv2	pfam_K_chnl_volt-dep_Kv2,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv2.2,prints_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv8	-	no_errors	KCNB2	HGNC	ENSG00000182674				179	0	0	155	15	8.82353
PSKH2	0	genome.wustl.edu	37	8	87076406	87076406	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	87076406	87076406	T	-	DEL	PSKH2	ENST00000276616	human	ensembl	74_37	-1	known	frame_shift_del	c.640	p.S214fs	0.983	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	PSKH2	HGNC	ENSG00000147613				61	0	0	76	6	7.31707
INTS8	0	genome.wustl.edu	37	8	95892420	95892421	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	8	95892420	95892421	-	A	INS	INTS8	ENST00000523731	human	ensembl	74_37	+1	known	frame_shift_ins	c.2946_2947	p.F985fs	1.000:1.000	NULL	NULL	-	no_errors	INTS8	HGNC	ENSG00000164941				80	0	0	85	10	10.5263
PAPPA	0	genome.wustl.edu	37	9	119144763	119144763	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	119144763	119144763	G	-	DEL	PAPPA	ENST00000328252	human	ensembl	74_37	+1	known	frame_shift_del	c.4767	p.T1590fs	1.000	NULL	pfam_Sushi_SCR_CCP,pfam_Notch_dom,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA	HGNC	ENSG00000182752				90	0	0	80	7	8.04598
CDK5RAP2	0	genome.wustl.edu	37	9	123253654	123253654	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	123253654	123253654	T	-	DEL	CDK5RAP2	ENST00000349780	human	ensembl	74_37	-1	known	frame_shift_del	c.1413	p.K471fs	0.277	NULL	pfam_Spindle_assoc	-	no_errors	CDK5RAP2	HGNC	ENSG00000136861				75	0	0	58	6	9.375
OR1J2	0	genome.wustl.edu	37	9	125273386	125273386	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	125273386	125273386	T	-	DEL	OR1J2	ENST00000335302	human	ensembl	74_37	+1	known	frame_shift_del	c.306	p.F104fs	0.995	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1J2	HGNC	ENSG00000197233				77	0	0	80	11	12.0879
MAPKAP1	0	genome.wustl.edu	37	9	128322020	128322020	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	128322020	128322020	G	-	DEL	MAPKAP1	ENST00000265960	human	ensembl	74_37	-1	known	frame_shift_del	c.740	p.P247fs	1.000	pfam_SIN1	pfam_SIN1	-	no_errors	MAPKAP1	HGNC	ENSG00000119487				60	0	0	34	9	20.9302
TTF1	0	genome.wustl.edu	37	9	135277202	135277202	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	135277202	135277202	T	-	DEL	TTF1	ENST00000334270	human	ensembl	74_37	-1	known	frame_shift_del	c.1007	p.K336fs	0.912	NULL	superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	TTF1	HGNC	ENSG00000125482				138	0	0	127	18	12.4138
PNPLA7	0	genome.wustl.edu	37	9	140356678	140356679	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	140356678	140356679	-	G	INS	PNPLA7	ENST00000406427	human	ensembl	74_37	-1	known	frame_shift_ins	c.3598_3597	p.I1199fs	1.000:1.000	superfamily_Acyl_Trfase/lysoPLipase	pfam_cNMP-bd_dom,pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	PNPLA7	HGNC	ENSG00000130653				34	0	0	31	9	22.5
DPH7	0	genome.wustl.edu	37	9	140469211	140469211	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	140469211	140469211	T	-	DEL	DPH7	ENST00000277540	human	ensembl	74_37	-1	known	frame_shift_del	c.460	p.T154fs	0.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DPH7	HGNC	ENSG00000148399				223	0	0	181	29	13.8095
FREM1	0	genome.wustl.edu	37	9	14789027	14789028	+	Frame_Shift_Del	DEL	GT	GT	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	14789027	14789028	GT	-	DEL	FREM1	ENST00000380881	human	ensembl	74_37	-1	known	frame_shift_del	c.4070_4069	p.T1357fs	0.995:1.000	NULL	pfam_C-type_lectin,pfam_Calx_beta,superfamily_C-type_lectin_fold,superfamily_Cadherin-like,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	FREM1	HGNC	ENSG00000164946				33	0	0	29	15	34.0909
KIAA0020	0	genome.wustl.edu	37	9	2804407	2804408	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	2804407	2804408	-	T	INS	KIAA0020	ENST00000397885	human	ensembl	74_37	-1	known	frame_shift_ins	c.1871_1870	p.S624fs	1.000:1.000	superfamily_ARM-type_fold	pfam_CPL,superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt,pfscan_Pumilio_RNA-bd_rpt	-	no_errors	KIAA0020	HGNC	ENSG00000080608				79	0	0	62	10	13.8889
TAF1L	0	genome.wustl.edu	37	9	32633025	32633025	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	32633025	32633025	T	-	DEL	TAF1L	ENST00000242310	human	ensembl	74_37	-1	known	frame_shift_del	c.2553	p.A852fs	1.000	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728				171	0	0	144	17	10.559
C9orf131	0	genome.wustl.edu	37	9	35044408	35044408	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	35044408	35044408	A	-	DEL	C9orf131	ENST00000312292	human	ensembl	74_37	+1	known	frame_shift_del	c.1782	p.N596fs	0.005	NULL	NULL	-	no_errors	C9orf131	HGNC	ENSG00000174038				208	0	0	198	28	12.3894
GBA2	0	genome.wustl.edu	37	9	35738573	35738574	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	35738573	35738574	-	T	INS	GBA2	ENST00000545786	human	ensembl	74_37	-1	known	frame_shift_ins	c.2022_2021	p.N674fs	0.894:1.000	pfam_Glucosylceramidase,superfamily_6-hairpin_glycosidase-like,pirsf_Beta_glucosidase_GBA2-type	pfam_Glucosylceramidase,pfam_GBA2_N,superfamily_6-hairpin_glycosidase-like,pirsf_Beta_glucosidase_GBA2-type	-	no_errors	GBA2	HGNC	ENSG00000070610				150	0	0	108	13	10.7438
PLGRKT	0	genome.wustl.edu	37	9	5361787	5361787	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	5361787	5361787	A	-	DEL	PLGRKT	ENST00000223864	human	ensembl	74_37	-1	known	frame_shift_del	c.183	p.F61fs	1.000	pfam_DUF2368	pfam_DUF2368	-	no_errors	PLGRKT	HGNC	ENSG00000107020				104	0	0	95	12	11.215
ERMP1	0	genome.wustl.edu	37	9	5801292	5801292	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	5801292	5801292	T	-	DEL	ERMP1	ENST00000339450	human	ensembl	74_37	-1	known	frame_shift_del	c.1951	p.T651fs	0.994	NULL	pfam_Peptidase_M28,pfam_Peptidase_M20	-	no_errors	ERMP1	HGNC	ENSG00000099219				69	0	0	61	16	20.7792
KANK1	0	genome.wustl.edu	37	9	711074	711075	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	711074	711075	-	C	INS	KANK1	ENST00000382297	human	ensembl	74_37	+1	known	frame_shift_ins	c.308_309	p.N105fs	1.000:0.978	NULL	pfam_Ankyrin_rpt,pfam_KN_motif,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KANK1	HGNC	ENSG00000107104				119	0	0	99	12	10.8108
PHF2	0	genome.wustl.edu	37	9	96422612	96422612	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	9	96422612	96422612	A	-	DEL	PHF2	ENST00000359246	human	ensembl	74_37	+1	known	frame_shift_del	c.1468	p.K492fs	1.000	NULL	pfam_JmjC_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF2	HGNC	ENSG00000197724				11	0	0	21	5	19.2308
DCX	0	genome.wustl.edu	37	X	110644445	110644445	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	X	110644445	110644445	G	-	DEL	DCX	ENST00000338081	human	ensembl	74_37	-1	known	frame_shift_del	c.721	p.Q241fs	1.000	pirsf_Doublecortin_chordata	pfam_Doublecortin_dom,smart_Doublecortin_dom,pirsf_Doublecortin_chordata,pfscan_Doublecortin_dom	-	no_errors	DCX	HGNC	ENSG00000077279				101	0	0	75	10	11.7647
FGF13	0	genome.wustl.edu	37	X	137939823	137939823	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	X	137939823	137939823	G	-	DEL	FGF13	ENST00000370603	human	ensembl	74_37	-1	known	frame_shift_del	c.68	p.P23fs	1.000	NULL	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam,prints_Fibroblast_GF_fam	-	no_errors	FGF13	HGNC	ENSG00000129682				49	0	0	51	10	16.3934
XIST	0	genome.wustl.edu	37	X	73071846	73071846	+	RNA	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	X	73071846	73071846	A	-	DEL	XIST	ENST00000429829	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	XIST	HGNC	ENSG00000229807				64	0	0	35	4	10.2564
MAGEE1	0	genome.wustl.edu	37	X	75650343	75650343	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	X	75650343	75650343	A	-	DEL	MAGEE1	ENST00000361470	human	ensembl	74_37	+1	known	frame_shift_del	c.2020	p.I675fs	0.011	pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEE1	HGNC	ENSG00000198934				45	0	0	41	10	19.6078
FAM133A	0	genome.wustl.edu	37	X	92964950	92964950	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4201-01A-01D-1126-08	TCGA-BR-4201-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf40f330-fe61-46ba-9b96-ad011d85bb21	7966b3b9-707d-40ce-9895-151824d97ea7	X	92964950	92964950	A	-	DEL	FAM133A	ENST00000322139	human	ensembl	74_37	+1	known	frame_shift_del	c.532	p.R180fs	0.996	NULL	NULL	-	no_errors	FAM133A	HGNC	ENSG00000179083				62	0	0	33	9	21.4286
