Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
MOV10	0	genome.wustl.edu	37	1	113241043	113241043	+	Silent	SNP	G	G	A			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	1	113241043	113241043	G	A	SNP	MOV10	ENST00000357443	human	ensembl	74_37	+1	known	silent	c.2451	p.K817	1.000	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	MOV10	HGNC	ENSG00000155363				36	0	0	33	5	13.1579
NGF	0	genome.wustl.edu	37	1	115829244	115829244	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	1	115829244	115829244	G	A	SNP	NGF	ENST00000369512	human	ensembl	74_37	-1	known	missense	c.173	p.A58V	0.000	pirsf_Nerve_growth_factor-like	pirsf_Nerve_growth_factor-like,pfam_Nerve_growth_factor-rel,smart_Nerve_growth_factor-rel,prints_Nerve_growth_factor-rel,prints_Nerve_growth_factor_bsu_mml,prints_Nerve_growth_factor_bsu,pfscan_Nerve_growth_factor-rel	-	no_errors	NGF	HGNC	ENSG00000134259				32	0	0	30	4	11.7647
CD58	0	genome.wustl.edu	37	1	117087145	117087145	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	1	117087145	117087145	A	T	SNP	CD58	ENST00000369489	human	ensembl	74_37	-1	known	nonsense	c.152	p.L51*	0.000	NULL	NULL	-	no_errors	CD58	HGNC	ENSG00000116815				40	0	0	42	12	22.2222
SLAMF1	0	genome.wustl.edu	37	1	160589609	160589609	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	1	160589609	160589609	T	C	SNP	SLAMF1	ENST00000302035	human	ensembl	74_37	-1	known	missense	c.821	p.E274G	0.016	NULL	pfam_Sig_lymph_act_molc_N,pfscan_Ig-like_dom	-	no_errors	SLAMF1	HGNC	ENSG00000117090				95	0	0	146	37	20.2186
EDEM3	0	genome.wustl.edu	37	1	184663564	184663564	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	1	184663564	184663564	T	A	SNP	EDEM3	ENST00000318130	human	ensembl	74_37	-1	known	missense	c.2432	p.D811V	1.000	NULL	pfam_Glyco_hydro_47,pfam_Protease-assoc_domain,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	EDEM3	HGNC	ENSG00000116406				18	0	0	25	12	32.4324
RNF2	0	genome.wustl.edu	37	1	185068944	185068944	+	Silent	SNP	C	C	T			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	1	185068944	185068944	C	T	SNP	RNF2	ENST00000367510	human	ensembl	74_37	+1	known	silent	c.759	p.N253	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF2	HGNC	ENSG00000121481				33	0	0	81	8	8.98876
USH2A	0	genome.wustl.edu	37	1	216496837	216496837	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	1	216496837	216496837	T	A	SNP	USH2A	ENST00000366943	human	ensembl	74_37	-1	known	missense	c.1529	p.D510V	0.407	smart_Laminin_N,pfscan_Laminin_N	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781				79	0	0	104	21	16.8
AIDA	0	genome.wustl.edu	37	1	222843513	222843513	+	Silent	SNP	C	C	T			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	1	222843513	222843513	C	T	SNP	AIDA	ENST00000541237	human	ensembl	74_37	-1	known	silent	c.714	p.E238	1.000	pfam_AIDA_N	pfam_AIDA_N,superfamily_AIDA_N	-	no_errors	AIDA	HGNC	ENSG00000186063				58	0	0	62	16	20.5128
TLR5	0	genome.wustl.edu	37	1	223285929	223285929	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	1	223285929	223285929	G	A	SNP	TLR5	ENST00000342210	human	ensembl	74_37	-1	known	missense	c.445	p.R149C	0.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR5	HGNC	ENSG00000187554				76	0	0	84	23	21.4953
OR2T4	0	genome.wustl.edu	37	1	248525601	248525601	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	1	248525601	248525601	T	G	SNP	OR2T4	ENST00000366475	human	ensembl	74_37	+1	known	missense	c.719	p.L240R	0.082	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T4	HGNC	ENSG00000196944				117	0	0	105	28	21.0526
OR2G6	0	genome.wustl.edu	37	1	248685218	248685218	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	1	248685218	248685218	A	C	SNP	OR2G6	ENST00000343414	human	ensembl	74_37	+1	known	missense	c.271	p.T91P	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2G6	HGNC	ENSG00000188558				61	0	0	80	7	8.04598
ARID1A	0	genome.wustl.edu	37	1	27100312	27100312	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	1	27100312	27100312	C	T	SNP	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	nonsense	c.4024	p.Q1342*	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713				161	0	0	117	76	39.3782
SORCS1	0	genome.wustl.edu	37	10	108459010	108459010	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	10	108459010	108459010	T	C	SNP	SORCS1	ENST00000344440	human	ensembl	74_37	-1	known	missense	c.1375	p.R459G	0.991	smart_VPS10	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS1	HGNC	ENSG00000108018				60	0	0	77	16	17.2043
TDRD1	0	genome.wustl.edu	37	10	115959035	115959035	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	10	115959035	115959035	C	T	SNP	TDRD1	ENST00000251864	human	ensembl	74_37	+1	known	missense	c.488	p.P163L	0.461	NULL	pfam_Tudor,pfam_Znf_MYND,smart_Tudor,pfscan_Tudor,pfscan_Znf_MYND	-	no_errors	TDRD1	HGNC	ENSG00000095627				88	0	0	74	21	22.1053
FANK1	0	genome.wustl.edu	37	10	127697933	127697933	+	RNA	SNP	T	T	G			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	10	127697933	127697933	T	G	SNP	FANK1	ENST00000464130	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.206	-	-	-	no_errors	FANK1	HGNC	ENSG00000203780				51	0	0	61	11	15.2778
PITRM1	0	genome.wustl.edu	37	10	3197782	3197782	+	Splice_Site	SNP	C	C	T			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	10	3197782	3197782	C	T	SNP	PITRM1	ENST00000380989	human	ensembl	74_37	-1	known	splice_site	c.1621+1	e14+1	1.000	-	-	-	no_errors	PITRM1	HGNC	ENSG00000107959				92	0	0	66	16	19.5122
BMS1	0	genome.wustl.edu	37	10	43292386	43292386	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	10	43292386	43292386	A	C	SNP	BMS1	ENST00000374518	human	ensembl	74_37	+1	known	missense	c.1694	p.K565T	0.620	superfamily_P-loop_NTPase	pfam_BMS1_TSR1_C,pfam_AARP2CN,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_AARP2CN	-	no_errors	BMS1	HGNC	ENSG00000165733				61	0	0	63	15	19.2308
BMS1	0	genome.wustl.edu	37	10	43292525	43292525	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	10	43292525	43292525	G	C	SNP	BMS1	ENST00000374518	human	ensembl	74_37	+1	known	missense	c.1833	p.E611D	0.000	superfamily_P-loop_NTPase	pfam_BMS1_TSR1_C,pfam_AARP2CN,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_AARP2CN	-	no_errors	BMS1	HGNC	ENSG00000165733				66	0	0	102	24	19.0476
ZWINT	0	genome.wustl.edu	37	10	58118565	58118565	+	Splice_Site	SNP	C	C	T			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	10	58118565	58118565	C	T	SNP	ZWINT	ENST00000373944	human	ensembl	74_37	-1	known	splice_site	c.623+1	e6+1	1.000	-	-	-	no_errors	ZWINT	HGNC	ENSG00000122952				90	0	0	86	16	15.6863
OR9G1	0	genome.wustl.edu	37	11	56468143	56468143	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	11	56468143	56468143	G	A	SNP	OR9G1	ENST00000312153	human	ensembl	74_37	+1	known	missense	c.280	p.A94T	0.880	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR9G1	HGNC	ENSG00000174914				104	0	0	103	17	14.1667
OR52E6	0	genome.wustl.edu	37	11	5862742	5862742	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	11	5862742	5862742	C	A	SNP	OR52E6	ENST00000379946	human	ensembl	74_37	-1	known	missense	c.398	p.C133F	0.998	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52E6	HGNC	ENSG00000205409				158	1	0.628931	249	20	7.43494
PGA3	0	genome.wustl.edu	37	11	60971081	60971081	+	Silent	SNP	C	C	T			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	11	60971081	60971081	C	T	SNP	PGA3	ENST00000325558	human	ensembl	74_37	+1	known	silent	c.45	p.C15	0.781	superfamily_Peptidase_aspartic_dom	pfam_Aspartic_peptidase,pfam_Aspartic_peptidase_N,superfamily_Peptidase_aspartic_dom,prints_Aspartic_peptidase	-	no_errors	PGA3	HGNC	ENSG00000229859				68	0	0	76	23	23.2323
MARK2	0	genome.wustl.edu	37	11	63672270	63672270	+	Silent	SNP	G	G	A			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	11	63672270	63672270	G	A	SNP	MARK2	ENST00000402010	human	ensembl	74_37	+1	known	silent	c.1689	p.Q563	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_KA1_dom,superfamily_Kinase-like_dom,superfamily_KA1/Ssp2_C,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MARK2	HGNC	ENSG00000072518				41	0	0	37	12	24.4898
RPS6KA4	0	genome.wustl.edu	37	11	64126913	64126913	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	11	64126913	64126913	G	A	SNP	RPS6KA4	ENST00000334205	human	ensembl	74_37	+1	known	missense	c.119	p.G40D	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom	-	no_errors	RPS6KA4	HGNC	ENSG00000162302				8	0	0	16	2	11.1111
MALAT1	0	genome.wustl.edu	37	11	65269711	65269711	+	RNA	SNP	A	A	G			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	11	65269711	65269711	A	G	SNP	MALAT1	ENST00000534336	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MALAT1	HGNC	ENSG00000251562				21	0	0	33	6	15.3846
GRM5	0	genome.wustl.edu	37	11	88780590	88780590	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	11	88780590	88780590	A	G	SNP	GRM5	ENST00000305447	human	ensembl	74_37	-1	known	missense	c.451	p.S151P	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_GPCR_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Metabotropic_Glu_rcpt_Homer-bd,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,prints_GPCR_3_mtglu_rcpt_5,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_1,pfscan_GPCR_3_C	-	no_errors	GRM5	HGNC	ENSG00000168959				35	0	0	44	12	21.4286
TAS2R43	0	genome.wustl.edu	37	12	11244527	11244527	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	12	11244527	11244527	G	C	SNP	TAS2R43	ENST00000531678	human	ensembl	74_37	-1	known	missense	c.302	p.T101S	0.733	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R43	HGNC	ENSG00000255374				44	0	0	52	7	11.8644
OR10P1	0	genome.wustl.edu	37	12	56031172	56031172	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	12	56031172	56031172	C	T	SNP	OR10P1	ENST00000309675	human	ensembl	74_37	+1	known	missense	c.497	p.S166F	0.765	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10P1	HGNC	ENSG00000175398				49	0	0	54	20	27.027
COL4A2	0	genome.wustl.edu	37	13	111111150	111111150	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	13	111111150	111111150	G	A	SNP	COL4A2	ENST00000360467	human	ensembl	74_37	+1	known	missense	c.1465	p.D489N	0.048	NULL	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A2	HGNC	ENSG00000134871				92	0	0	85	13	13.2653
AHNAK2	0	genome.wustl.edu	37	14	105405849	105405849	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	14	105405849	105405849	C	T	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	missense	c.15939	p.M5313I	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				34	0	0	47	9	16.0714
OR4N5	0	genome.wustl.edu	37	14	20612757	20612757	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	14	20612757	20612757	C	T	SNP	OR4N5	ENST00000333629	human	ensembl	74_37	+1	known	missense	c.863	p.T288M	0.961	prints_Olfact_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR4N5	HGNC	ENSG00000184394				84	0	0	102	20	16.3934
TMEM63C	0	genome.wustl.edu	37	14	77705811	77705811	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	14	77705811	77705811	A	T	SNP	TMEM63C	ENST00000298351	human	ensembl	74_37	+1	known	missense	c.782	p.N261I	0.981	NULL	pfam_DUF221	-	no_errors	TMEM63C	HGNC	ENSG00000165548				31	0	0	43	13	23.2143
ITGA11	0	genome.wustl.edu	37	15	68661546	68661546	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	15	68661546	68661546	C	T	SNP	ITGA11	ENST00000315757	human	ensembl	74_37	-1	known	missense	c.241	p.G81R	0.725	smart_Int_alpha_beta-p	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA11	HGNC	ENSG00000137809				60	0	0	56	21	27.2727
C15orf32	0	genome.wustl.edu	37	15	93015418	93015418	+	Silent	SNP	T	T	C			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	15	93015418	93015418	T	C	SNP	C15orf32	ENST00000333334	human	ensembl	74_37	+1	known	silent	c.40	p.L14	0.000	NULL	NULL	-	no_errors	C15orf32	HGNC	ENSG00000183643				30	0	0	55	3	5.17241
SETD1A	0	genome.wustl.edu	37	16	30976237	30976237	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	16	30976237	30976237	C	A	SNP	SETD1A	ENST00000262519	human	ensembl	74_37	+1	known	missense	c.1174	p.P392T	0.998	NULL	pfam_COMPASS_Set1_N-SET,pfam_SET_dom,pfam_RRM_dom,smart_RRM_dom,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_RRM_dom	-	no_errors	SETD1A	HGNC	ENSG00000099381				120	0	0	106	28	20.8955
SMPD3	0	genome.wustl.edu	37	16	68405903	68405903	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	16	68405903	68405903	G	A	SNP	SMPD3	ENST00000219334	human	ensembl	74_37	-1	known	missense	c.182	p.A61V	0.020	NULL	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	-	no_errors	SMPD3	HGNC	ENSG00000103056				8	0	0	3	5	62.5
ABCA8	0	genome.wustl.edu	37	17	66871845	66871845	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	17	66871845	66871845	G	A	SNP	ABCA8	ENST00000430352	human	ensembl	74_37	-1	known	missense	c.4400	p.T1467M	0.972	superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA8	HGNC	ENSG00000141338				30	0	0	37	8	17.7778
SYT4	0	genome.wustl.edu	37	18	40850508	40850508	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	18	40850508	40850508	A	G	SNP	SYT4	ENST00000255224	human	ensembl	74_37	-1	known	missense	c.1076	p.V359A	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin	-	no_errors	SYT4	HGNC	ENSG00000132872				94	0	0	107	23	17.6923
BEST2	0	genome.wustl.edu	37	19	12866250	12866250	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	19	12866250	12866250	G	A	SNP	BEST2	ENST00000042931	human	ensembl	74_37	+1	known	missense	c.694	p.V232I	1.000	pfam_Bestrophin/UPF0187	pfam_Bestrophin/UPF0187	-	no_errors	BEST2	HGNC	ENSG00000039987				50	0	0	53	23	30.2632
OR10H2	0	genome.wustl.edu	37	19	15839222	15839222	+	Silent	SNP	C	C	T			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	19	15839222	15839222	C	T	SNP	OR10H2	ENST00000305899	human	ensembl	74_37	+1	known	silent	c.369	p.Y123	0.989	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10H2	HGNC	ENSG00000171942				22	0	0	30	8	21.0526
SSBP4	0	genome.wustl.edu	37	19	18538736	18538736	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	19	18538736	18538736	C	T	SNP	SSBP4	ENST00000270061	human	ensembl	74_37	+1	known	missense	c.223	p.P75S	0.998	prints_SSDP_DNA-bd	smart_LisH_dimerisation,pfscan_LisH_dimerisation,prints_SSDP_DNA-bd	-	no_errors	SSBP4	HGNC	ENSG00000130511				36	0	0	32	11	25.5814
ZNF492	0	genome.wustl.edu	37	19	22846716	22846716	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	19	22846716	22846716	G	A	SNP	ZNF492	ENST00000456783	human	ensembl	74_37	+1	known	missense	c.245	p.R82K	0.001	NULL	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF492	HGNC	ENSG00000229676				29	0	0	27	17	38.6364
ZNF492	0	genome.wustl.edu	37	19	22846743	22846743	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	19	22846743	22846743	G	A	SNP	ZNF492	ENST00000456783	human	ensembl	74_37	+1	known	missense	c.272	p.C91Y	0.150	NULL	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF492	HGNC	ENSG00000229676				31	0	0	31	16	34.0426
WDR88	0	genome.wustl.edu	37	19	33647307	33647307	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	19	33647307	33647307	C	T	SNP	WDR88	ENST00000355868	human	ensembl	74_37	+1	known	missense	c.856	p.H286Y	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_PQQ_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,smart_PQQ_beta_propeller_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR88	HGNC	ENSG00000166359				85	0	0	112	26	18.8406
MEIS3	0	genome.wustl.edu	37	19	47910682	47910682	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	19	47910682	47910682	G	A	SNP	MEIS3	ENST00000559524	human	ensembl	74_37	-1	known	missense	c.1000	p.P334S	1.000	pfam_Homeobox_dom,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	MEIS3	HGNC	ENSG00000105419				31	0	0	35	12	25.5319
NLRP5	0	genome.wustl.edu	37	19	56539808	56539808	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	19	56539808	56539808	C	T	SNP	NLRP5	ENST00000390649	human	ensembl	74_37	+1	known	missense	c.2209	p.R737W	0.004	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP5	HGNC	ENSG00000171487				158	0	0	211	37	14.9194
ZNF419	0	genome.wustl.edu	37	19	58004449	58004449	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	19	58004449	58004449	T	C	SNP	ZNF419	ENST00000424930	human	ensembl	74_37	+1	known	missense	c.527	p.L176P	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF419	HGNC	ENSG00000105136				30	0	0	46	3	6.12245
MUC16	0	genome.wustl.edu	37	19	9007843	9007843	+	Silent	SNP	A	A	C			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	19	9007843	9007843	A	C	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	silent	c.39381	p.G13127	0.237	smart_SEA_dom	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				72	0	0	100	13	11.5044
GREB1	0	genome.wustl.edu	37	2	11735458	11735458	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	2	11735458	11735458	C	T	SNP	GREB1	ENST00000234142	human	ensembl	74_37	+1	known	missense	c.1778	p.T593M	0.716	NULL	superfamily_P-loop_NTPase	-	no_errors	GREB1	HGNC	ENSG00000196208				38	0	0	34	7	17.0732
NCKAP5	0	genome.wustl.edu	37	2	133542728	133542728	+	Silent	SNP	T	T	G			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	2	133542728	133542728	T	G	SNP	NCKAP5	ENST00000317721	human	ensembl	74_37	-1	known	silent	c.1656	p.P552	0.001	NULL	NULL	-	no_errors	NCKAP5	HGNC	ENSG00000176771				69	0	0	87	26	23.0088
ZEB2	0	genome.wustl.edu	37	2	145156205	145156205	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	2	145156205	145156205	G	A	SNP	ZEB2	ENST00000303660	human	ensembl	74_37	-1	known	missense	c.2549	p.S850F	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZEB2	HGNC	ENSG00000169554				78	0	0	85	25	22.7273
MYO1B	0	genome.wustl.edu	37	2	192227095	192227095	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	2	192227095	192227095	C	T	SNP	MYO1B	ENST00000304164	human	ensembl	74_37	+1	known	missense	c.763	p.R255W	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO1B	HGNC	ENSG00000128641				22	0	0	32	16	33.3333
CASP10	0	genome.wustl.edu	37	2	202073970	202073970	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	2	202073970	202073970	C	T	SNP	CASP10	ENST00000286186	human	ensembl	74_37	+1	known	missense	c.1100	p.S367L	0.007	pfam_Pept_C14_caspase,smart_Pept_C14A_p45_core,pfscan_Pept_C14_ICE_p20	pfam_Pept_C14_caspase,pfam_DED,superfamily_DEATH-like_dom,smart_DED,smart_Pept_C14A_p45_core,prints_Pept_C14A_p45_core,pfscan_DED,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20	-	no_errors	CASP10	HGNC	ENSG00000003400				85	0	0	99	18	15.3846
CHRND	0	genome.wustl.edu	37	2	233396285	233396285	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	2	233396285	233396285	G	A	SNP	CHRND	ENST00000258385	human	ensembl	74_37	+1	known	missense	c.966	p.M322I	0.620	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRND	HGNC	ENSG00000135902				58	0	0	60	17	22.0779
C20orf194	0	genome.wustl.edu	37	20	3245153	3245153	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	20	3245153	3245153	A	C	SNP	C20orf194	ENST00000252032	human	ensembl	74_37	-1	known	missense	c.2804	p.L935R	1.000	NULL	NULL	-	no_errors	C20orf194	HGNC	ENSG00000088854				28	0	0	36	11	23.4043
PROCR	0	genome.wustl.edu	37	20	33764014	33764014	+	Silent	SNP	C	C	T			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	20	33764014	33764014	C	T	SNP	PROCR	ENST00000216968	human	ensembl	74_37	+1	known	silent	c.366	p.P122	0.000	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	-	no_errors	PROCR	HGNC	ENSG00000101000				67	0	0	68	10	12.8205
YTHDF1	0	genome.wustl.edu	37	20	61834910	61834910	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	20	61834910	61834910	C	T	SNP	YTHDF1	ENST00000370339	human	ensembl	74_37	-1	known	missense	c.382	p.A128T	0.995	NULL	pfam_YTH_domain,pfscan_YTH_domain	-	no_errors	YTHDF1	HGNC	ENSG00000149658				40	0	0	43	8	15.6863
GRIK1-AS2	0	genome.wustl.edu	37	21	30968776	30968776	+	Silent	SNP	G	G	T			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	21	30968776	30968776	G	T	SNP	GRIK1-AS2	ENST00000333765	human	ensembl	74_37	+1	known	silent	c.105	p.G35	0.000	NULL	NULL	-	no_errors	GRIK1-AS2	HGNC	ENSG00000183653				62	0	0	46	11	19.2982
POM121L9P	0	genome.wustl.edu	37	22	24659734	24659734	+	RNA	SNP	T	T	C			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	22	24659734	24659734	T	C	SNP	POM121L9P	ENST00000414583	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	POM121L9P	HGNC	ENSG00000128262				10	0	0	21	5	19.2308
FBXO40	0	genome.wustl.edu	37	3	121345655	121345655	+	Silent	SNP	T	T	G			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	3	121345655	121345655	T	G	SNP	FBXO40	ENST00000338040	human	ensembl	74_37	+1	known	silent	c.2028	p.T676	0.909	NULL	superfamily_F-box_dom,superfamily_TRAF-like,pfscan_F-box_dom,pfscan_Znf_TRAF	-	no_errors	FBXO40	HGNC	ENSG00000163833				71	0	0	102	19	15.7025
ILDR1	0	genome.wustl.edu	37	3	121725886	121725886	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	3	121725886	121725886	G	A	SNP	ILDR1	ENST00000344209	human	ensembl	74_37	-1	known	missense	c.181	p.R61C	1.000	smart_Ig_sub	pfam_LISCH7,smart_Ig_sub	-	no_errors	ILDR1	HGNC	ENSG00000145103				34	0	0	45	10	18.1818
PARP15	0	genome.wustl.edu	37	3	122354929	122354929	+	Silent	SNP	C	C	T			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	3	122354929	122354929	C	T	SNP	PARP15	ENST00000464300	human	ensembl	74_37	+1	known	silent	c.2019	p.L673	0.998	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	pfam_Macro_dom,pfam_Poly(ADP-ribose)pol_cat_dom,smart_Macro_dom,pfscan_Macro_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP15	HGNC	ENSG00000173200				29	0	0	36	8	18.1818
P2RY12	0	genome.wustl.edu	37	3	151056389	151056389	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	3	151056389	151056389	A	C	SNP	P2RY12	ENST00000302632	human	ensembl	74_37	-1	known	missense	c.245	p.L82R	0.997	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_P2Y12_rcpt,prints_GPCR_Rhodpsn,prints_P2Y13_rcpt,prints_P2Y14_rcpt	-	no_errors	P2RY12	HGNC	ENSG00000169313				45	0	0	56	10	15.1515
PIK3CA	0	genome.wustl.edu	37	3	178921553	178921553	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	3	178921553	178921553	T	A	SNP	PIK3CA	ENST00000263967	human	ensembl	74_37	+1	known	missense	c.1035	p.N345K	1.000	superfamily_C2_dom,smart_PI3K_C2_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879				53	0	0	56	12	17.6471
SDHAP1	0	genome.wustl.edu	37	3	195701304	195701304	+	RNA	SNP	C	C	T			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	3	195701304	195701304	C	T	SNP	SDHAP1	ENST00000427841	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SDHAP1	HGNC	ENSG00000185485				32	0	0	29	6	17.1429
NEK10	0	genome.wustl.edu	37	3	27326407	27326407	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	3	27326407	27326407	A	G	SNP	NEK10	ENST00000341435	human	ensembl	74_37	-1	known	missense	c.1835	p.L612P	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Aminoglycoside_PTrfase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	NEK10	HGNC	ENSG00000163491				63	0	0	69	15	17.8571
C3orf67	0	genome.wustl.edu	37	3	58849420	58849420	+	Nonsense_Mutation	SNP	G	G	C			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	3	58849420	58849420	G	C	SNP	C3orf67	ENST00000482387	human	ensembl	74_37	-1	known	nonsense	c.1082	p.S361*	1.000	NULL	NULL	-	no_errors	C3orf67	HGNC	ENSG00000163689				87	0	0	79	14	15.0538
ROBO1	0	genome.wustl.edu	37	3	78676703	78676703	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	3	78676703	78676703	G	A	SNP	ROBO1	ENST00000464233	human	ensembl	74_37	-1	known	missense	c.3643	p.P1215S	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO1	HGNC	ENSG00000169855				15	0	0	22	2	8.33333
FAT4	0	genome.wustl.edu	37	4	126372620	126372620	+	Silent	SNP	T	T	G			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	4	126372620	126372620	T	G	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	silent	c.10449	p.V3483	0.592	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				72	0	0	87	16	15.534
TMA16	0	genome.wustl.edu	37	4	164428216	164428216	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	4	164428216	164428216	G	A	SNP	TMA16	ENST00000358572	human	ensembl	74_37	+1	known	missense	c.35	p.R12Q	0.840	pfam_Tma16	pfam_Tma16	-	no_errors	TMA16	HGNC	ENSG00000198498				27	0	0	29	2	6.45161
ADD1	0	genome.wustl.edu	37	4	2896375	2896375	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	4	2896375	2896375	G	A	SNP	ADD1	ENST00000264758	human	ensembl	74_37	+1	known	missense	c.658	p.G220S	1.000	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	-	no_errors	ADD1	HGNC	ENSG00000087274				29	0	0	34	9	20.9302
FAM86EP	0	genome.wustl.edu	37	4	3944026	3944026	+	RNA	SNP	T	T	G			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	4	3944026	3944026	T	G	SNP	FAM86EP	ENST00000313946	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.008	-	-	-	no_errors	FAM86EP	HGNC	ENSG00000251669				11	0	0	8	4	33.3333
GABRA4	0	genome.wustl.edu	37	4	46967137	46967137	+	Silent	SNP	A	A	C			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	4	46967137	46967137	A	C	SNP	GABRA4	ENST00000264318	human	ensembl	74_37	-1	known	silent	c.984	p.A328	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABBAa4_rcpt,prints_GABAA_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA4	HGNC	ENSG00000109158				103	0	0	113	28	19.8582
ARHGAP24	0	genome.wustl.edu	37	4	86863361	86863361	+	Silent	SNP	C	C	A			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	4	86863361	86863361	C	A	SNP	ARHGAP24	ENST00000395184	human	ensembl	74_37	+1	known	silent	c.534	p.G178	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP24	HGNC	ENSG00000138639				50	0	0	64	12	15.7895
LOX	0	genome.wustl.edu	37	5	121405747	121405747	+	Splice_Site	SNP	C	C	T			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	5	121405747	121405747	C	T	SNP	LOX	ENST00000231004	human	ensembl	74_37	-1	known	splice_site	c.1247+1	e6+1	1.000	-	-	-	no_errors	LOX	HGNC	ENSG00000113083				57	0	0	67	14	17.284
SNCAIP	0	genome.wustl.edu	37	5	121785553	121785553	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	5	121785553	121785553	C	T	SNP	SNCAIP	ENST00000379533	human	ensembl	74_37	+1	known	missense	c.1747	p.R583C	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	SNCAIP	HGNC	ENSG00000064692				206	0	0	250	30	10.7143
FBN2	0	genome.wustl.edu	37	5	127727788	127727788	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	5	127727788	127727788	C	T	SNP	FBN2	ENST00000262464	human	ensembl	74_37	-1	known	missense	c.1526	p.R509H	1.000	pirsf_FBN,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pirsf_FBN,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Cadherin-like,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	FBN2	HGNC	ENSG00000138829				50	0	0	75	15	16.6667
PCDHGA11	0	genome.wustl.edu	37	5	140801462	140801462	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	5	140801462	140801462	G	A	SNP	PCDHGA11	ENST00000398587	human	ensembl	74_37	+1	known	missense	c.668	p.R223Q	0.004	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA11	HGNC	ENSG00000253873				58	0	0	55	16	22.5352
PPP2R2B	0	genome.wustl.edu	37	5	146080690	146080690	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	5	146080690	146080690	G	A	SNP	PPP2R2B	ENST00000394414	human	ensembl	74_37	-1	known	missense	c.284	p.T95M	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_PP2A_PR55	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_PP2A_PR55,prints_PP2A_PR55	-	no_errors	PPP2R2B	HGNC	ENSG00000156475				224	1	0.444444	244	51	17.2881
ZFP62	0	genome.wustl.edu	37	5	180276248	180276248	+	Silent	SNP	C	C	T			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	5	180276248	180276248	C	T	SNP	ZFP62	ENST00000512132	human	ensembl	74_37	-1	known	silent	c.2148	p.R716	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP62	HGNC	ENSG00000196670				12	0	0	16	6	27.2727
PDZD2	0	genome.wustl.edu	37	5	32048689	32048689	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	5	32048689	32048689	A	C	SNP	PDZD2	ENST00000282493	human	ensembl	74_37	+1	known	missense	c.1564	p.M522L	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD2	HGNC	ENSG00000133401				46	0	0	30	6	16.6667
SPEF2	0	genome.wustl.edu	37	5	35793298	35793298	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	5	35793298	35793298	A	C	SNP	SPEF2	ENST00000356031	human	ensembl	74_37	+1	known	missense	c.4592	p.E1531A	0.929	NULL	pfam_DUF1042,pfam_Adenylate_kin,pfam_HATC_dom_C,superfamily_P-loop_NTPase,superfamily_CH-domain,pfscan_CH-domain	-	no_errors	SPEF2	HGNC	ENSG00000152582				58	0	0	70	8	10.2564
CEP72	0	genome.wustl.edu	37	5	653238	653238	+	Silent	SNP	C	C	T			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	5	653238	653238	C	T	SNP	CEP72	ENST00000264935	human	ensembl	74_37	+1	known	silent	c.1914	p.S638	0.000	NULL	smart_Leu-rich_rpt_typical-subtyp,smart_U2A'_phosphoprotein32A_C	-	no_errors	CEP72	HGNC	ENSG00000112877				14	0	0	18	4	18.1818
ELL2	0	genome.wustl.edu	37	5	95278735	95278735	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	5	95278735	95278735	G	A	SNP	ELL2	ENST00000237853	human	ensembl	74_37	-1	known	missense	c.166	p.P56S	1.000	pfam_RNA_pol_II_elong_fac_ELL	pfam_RNA_pol_II_elong_fac_ELL,pfam_Occludin_RNApol2_elong_fac_ELL	-	no_errors	ELL2	HGNC	ENSG00000118985				14	0	0	32	8	20
SEC63	0	genome.wustl.edu	37	6	108204347	108204347	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	6	108204347	108204347	C	T	SNP	SEC63	ENST00000369002	human	ensembl	74_37	-1	known	missense	c.1678	p.A560T	0.965	superfamily_ARM-type_fold,smart_Sec63-dom	pfam_Sec63-dom,pfam_DnaJ_domain,superfamily_DnaJ_domain,superfamily_ARM-type_fold,smart_DnaJ_domain,smart_Sec63-dom,prints_DnaJ_domain,pfscan_DnaJ_domain	-	no_errors	SEC63	HGNC	ENSG00000025796				39	0	0	45	11	19.6429
KIF6	0	genome.wustl.edu	37	6	39507802	39507802	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	6	39507802	39507802	G	A	SNP	KIF6	ENST00000287152	human	ensembl	74_37	-1	known	missense	c.1622	p.S541F	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF6	HGNC	ENSG00000164627				155	0	0	173	46	21.0046
MUC17	0	genome.wustl.edu	37	7	100679310	100679310	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	7	100679310	100679310	C	T	SNP	MUC17	ENST00000306151	human	ensembl	74_37	+1	known	missense	c.4613	p.P1538L	0.003	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	MUC17	HGNC	ENSG00000169876				210	0	0	183	54	22.7848
ASIC3	0	genome.wustl.edu	37	7	150746116	150746116	+	Silent	SNP	C	C	T			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	7	150746116	150746116	C	T	SNP	ASIC3	ENST00000297512	human	ensembl	74_37	+1	known	silent	c.144	p.A48	0.918	pfam_Na+channel_ASC,prints_Na+channel_ASC	pfam_Na+channel_ASC,prints_Na+channel_ASC,tigrfam_EnaC	-	no_errors	ASIC3	HGNC	ENSG00000213199				20	0	0	26	8	23.5294
PRKAG2	0	genome.wustl.edu	37	7	151261254	151261254	+	Silent	SNP	A	A	C			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	7	151261254	151261254	A	C	SNP	PRKAG2	ENST00000287878	human	ensembl	74_37	-1	known	silent	c.1494	p.L498	0.651	NULL	pfam_CBS_dom,smart_CBS_dom	-	no_errors	PRKAG2	HGNC	ENSG00000106617				73	0	0	89	21	19.0909
ZNF679	0	genome.wustl.edu	37	7	63721262	63721262	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	7	63721262	63721262	G	C	SNP	ZNF679	ENST00000255746	human	ensembl	74_37	+1	known	missense	c.217	p.E73Q	0.035	smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF679	HGNC	ENSG00000197123				58	0	0	35	7	16.6667
MAGI2	0	genome.wustl.edu	37	7	77764359	77764359	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	7	77764359	77764359	G	T	SNP	MAGI2	ENST00000354212	human	ensembl	74_37	-1	known	missense	c.3010	p.L1004I	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_WW_dom,pfam_GK/Ca_channel_bsu,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_PDZ,smart_GK/Ca_channel_bsu,smart_WW_dom,pfscan_PDZ,pfscan_WW_dom,pfscan_Guanylate_kin-like	-	no_errors	MAGI2	HGNC	ENSG00000187391				56	0	0	64	11	14.6667
HEATR2	0	genome.wustl.edu	37	7	814760	814760	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	7	814760	814760	G	A	SNP	HEATR2	ENST00000297440	human	ensembl	74_37	+1	known	missense	c.2200	p.G734S	0.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	HEATR2	HGNC	ENSG00000164818				39	0	0	47	13	21.6667
RBM48	0	genome.wustl.edu	37	7	92164116	92164116	+	Silent	SNP	G	G	A			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	7	92164116	92164116	G	A	SNP	RBM48	ENST00000265732	human	ensembl	74_37	+1	known	silent	c.849	p.E283	1.000	NULL	NULL	-	no_errors	RBM48	HGNC	ENSG00000127993				36	0	0	63	10	13.6986
DPYS	0	genome.wustl.edu	37	8	105456579	105456579	+	Silent	SNP	C	C	T			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	8	105456579	105456579	C	T	SNP	DPYS	ENST00000351513	human	ensembl	74_37	-1	known	silent	c.690	p.T230	0.121	pfam_Amidohydro_1,tigrfam_Hydantoinase/dihydroPyrase	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	DPYS	HGNC	ENSG00000147647				32	0	0	21	6	22.2222
KIAA1456	0	genome.wustl.edu	37	8	12878836	12878836	+	Silent	SNP	C	C	A			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	8	12878836	12878836	C	A	SNP	KIAA1456	ENST00000524591	human	ensembl	74_37	+1	known	silent	c.648	p.G216	0.244	NULL	pfam_Methyltransf_11,pfam_Methyltransf_12,pfam_UbiE/COQ5_MeTrFase,pfam_Methyltransferase-rel	-	no_errors	KIAA1456	HGNC	ENSG00000250305				94	0	0	69	40	36.6972
CHRNA2	0	genome.wustl.edu	37	8	27320907	27320907	+	Silent	SNP	A	A	G			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	8	27320907	27320907	A	G	SNP	CHRNA2	ENST00000407991	human	ensembl	74_37	-1	known	silent	c.1053	p.N351	0.970	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA2	HGNC	ENSG00000120903				77	0	0	44	23	34.3284
KCNU1	0	genome.wustl.edu	37	8	36780063	36780063	+	Silent	SNP	C	C	G			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	8	36780063	36780063	C	G	SNP	KCNU1	ENST00000399881	human	ensembl	74_37	+1	known	silent	c.2652	p.L884	0.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_Ca-activ_BK_asu	-	no_errors	KCNU1	HGNC	ENSG00000215262				53	0	0	62	7	10.1449
CHD7	0	genome.wustl.edu	37	8	61655087	61655087	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	8	61655087	61655087	C	T	SNP	CHD7	ENST00000423902	human	ensembl	74_37	+1	known	missense	c.1096	p.P366S	1.000	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD7	HGNC	ENSG00000171316				93	0	0	117	8	6.4
EYA1	0	genome.wustl.edu	37	8	72123487	72123487	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	8	72123487	72123487	T	G	SNP	EYA1	ENST00000340726	human	ensembl	74_37	-1	known	missense	c.1602	p.K534N	1.000	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_EYA	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_EYA	-	no_errors	EYA1	HGNC	ENSG00000104313				57	0	0	68	14	17.0732
LOC100996870	0	genome.wustl.edu	37	9	66459891	66459891	+	RNA	SNP	T	T	G			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	9	66459891	66459891	T	G	SNP	LOC100996870	ENST00000424345	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.027	-	-	-	no_errors	RP11-262H14.1	Clone_based_vega_gene	ENSG00000238113				41	0	0	32	4	11.1111
LOC100996870	0	genome.wustl.edu	37	9	66465851	66465851	+	RNA	SNP	A	A	C			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	9	66465851	66465851	A	C	SNP	LOC100996870	ENST00000424345	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.093	-	-	-	no_errors	RP11-262H14.1	Clone_based_vega_gene	ENSG00000238113				10	0	0	8	4	33.3333
LOC100996870	0	genome.wustl.edu	37	9	66469111	66469111	+	RNA	SNP	T	T	C			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	9	66469111	66469111	T	C	SNP	LOC100996870	ENST00000424345	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.077	-	-	-	no_errors	RP11-262H14.1	Clone_based_vega_gene	ENSG00000238113				14	0	0	21	6	22.2222
MT-ND5	0	genome.wustl.edu	37	MT	12653	12653	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	MT	12653	12653	G	A	SNP	MT-ND5	ENST00000361567	human	ensembl	74_37	+1	known	nonsense	c.317	p.W106*	NULL	pfam_NADH_UbQ_OxRdtase_chain5/L_N,tigrfam_NADHpl_OxRdtase_5	pfam_NADH_UbQ/plastoQ_OxRdtase,pfam_NADH_DH_su5_C,pfam_NADH_UbQ_OxRdtase_chain5/L_N,tigrfam_NADHpl_OxRdtase_5	-	no_errors	MT-ND5	HGNC	ENSG00000198786				577	0	0	560	41	6.82196
MT-ND6	0	genome.wustl.edu	37	MT	14207	14207	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	MT	14207	14207	G	A	SNP	MT-ND6	ENST00000361681	human	ensembl	74_37	-1	known	missense	c.467	p.T156I	NULL	pfam_NADH_UbQ/plastoQ_OxRdtase_su6	pfam_NADH_UbQ/plastoQ_OxRdtase_su6	-	no_errors	MT-ND6	HGNC	ENSG00000198695				573	1	0.174216	161	334	67.4747
GPRASP1	0	genome.wustl.edu	37	X	101911301	101911301	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	X	101911301	101911301	G	C	SNP	GPRASP1	ENST00000361600	human	ensembl	74_37	+1	known	missense	c.2460	p.E820D	0.098	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	GPRASP1	HGNC	ENSG00000198932				177	0	0	205	33	13.8655
KIAA1210	0	genome.wustl.edu	37	X	118221164	118221164	+	Silent	SNP	C	C	T			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	X	118221164	118221164	C	T	SNP	KIAA1210	ENST00000402510	human	ensembl	74_37	-1	known	silent	c.4029	p.Q1343	0.000	NULL	NULL	-	no_errors	KIAA1210	HGNC	ENSG00000250423				288	0	0	366	62	14.486
BCOR	0	genome.wustl.edu	37	X	39933822	39933822	+	Silent	SNP	C	C	T			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	X	39933822	39933822	C	T	SNP	BCOR	ENST00000378444	human	ensembl	74_37	-1	known	silent	c.777	p.S259	0.008	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCOR	HGNC	ENSG00000183337				14	0	0	26	5	16.129
PLP2	0	genome.wustl.edu	37	X	49029563	49029563	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	X	49029563	49029563	A	G	SNP	PLP2	ENST00000376327	human	ensembl	74_37	+1	known	missense	c.184	p.I62V	0.126	pfam_Marvel	pfam_Marvel	-	no_errors	PLP2	HGNC	ENSG00000102007				43	0	0	41	4	8.88889
VCX3A	0	genome.wustl.edu	37	X	6451795	6451795	+	Silent	SNP	C	C	T			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	X	6451795	6451795	C	T	SNP	VCX3A	ENST00000381089	human	ensembl	74_37	-1	known	silent	c.552	p.P184	0.946	NULL	NULL	-	no_errors	VCX3A	HGNC	ENSG00000169059				130	0	0	150	67	30.8756
KLHL4	0	genome.wustl.edu	37	X	86868966	86868966	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	X	86868966	86868966	G	A	SNP	KLHL4	ENST00000373114	human	ensembl	74_37	+1	known	missense	c.509	p.R170H	0.016	superfamily_BTB/POZ_fold	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KLHL4	HGNC	ENSG00000102271				69	0	0	73	59	44.697
DIAPH2	0	genome.wustl.edu	37	X	96167527	96167527	+	Silent	SNP	C	C	T			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	X	96167527	96167527	C	T	SNP	DIAPH2	ENST00000324765	human	ensembl	74_37	+1	known	silent	c.708	p.C236	1.000	pfam_GTPase-bd,superfamily_ARM-type_fold	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,pfam_Drf_DAD,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	DIAPH2	HGNC	ENSG00000147202				18	0	0	29	3	9.375
PODN	0	genome.wustl.edu	37	1	53543383	53543383	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	1	53543383	53543383	G	-	DEL	PODN	ENST00000312553	human	ensembl	74_37	+1	known	frame_shift_del	c.909	p.A305fs	0.302	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_LRR-contain_N,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	PODN	HGNC	ENSG00000174348				84	0	0	98	17	14.7826
PTEN	0	genome.wustl.edu	37	10	89720799	89720802	+	Frame_Shift_Del	DEL	TACT	TACT	-			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	TACT	TACT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	10	89720799	89720802	TACT	-	DEL	PTEN	ENST00000371953	human	ensembl	74_37	+1	known	frame_shift_del	c.950_953	p.T319fs	1.000:1.000:1.000:1.000	pfam_Tensin_phosphatase_C2-dom,superfamily_C2_dom,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tensin_phosphatase_C2-dom	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_dom,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862				106	0	0	93	40	30.0752
TUBGCP3	0	genome.wustl.edu	37	13	113159028	113159028	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	13	113159028	113159028	T	-	DEL	TUBGCP3	ENST00000261965	human	ensembl	74_37	-1	known	frame_shift_del	c.2087	p.E696fs	1.000	pfam_TUBGCP	pfam_TUBGCP	-	no_errors	TUBGCP3	HGNC	ENSG00000126216				40	0	0	39	9	18.75
EDNRB	0	genome.wustl.edu	37	13	78475267	78475267	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	13	78475267	78475267	A	-	DEL	EDNRB	ENST00000334286	human	ensembl	74_37	-1	known	frame_shift_del	c.877	p.Y293fs	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Endthln_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_ETB_rcpt,prints_Endthln_rcpt,prints_GPCR_Rhodpsn,prints_Bombsn_rcpt	-	no_errors	EDNRB	HGNC	ENSG00000136160				61	0	0	75	14	15.7303
RBMX2	0	genome.wustl.edu	37	X	129546351	129546352	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4253-01A-01D-1126-08	TCGA-BR-4253-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	93af2a8c-8e75-4932-af5a-cb52af187daf	bf99df84-f84a-456a-b59a-04b2aeb1bd1d	X	129546351	129546352	-	A	INS	RBMX2	ENST00000305536	human	ensembl	74_37	+1	known	frame_shift_ins	c.498_499	p.K169fs	0.998:0.966	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBMX2	HGNC	ENSG00000134597				65	0	0	104	10	8.77193
