Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
KCNA3	0	genome.wustl.edu	37	1	111216794	111216794	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	1	111216794	111216794	C	T	SNP	KCNA3	ENST00000369769	human	ensembl	74_37	-1	known	missense	c.638	p.R213H	1.000	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.3,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA3	HGNC	ENSG00000177272				63	0	0	31	5	13.8889
WNT2B	0	genome.wustl.edu	37	1	113058764	113058764	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	1	113058764	113058764	A	G	SNP	WNT2B	ENST00000369684	human	ensembl	74_37	+1	known	missense	c.406	p.S136G	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt2	-	no_errors	WNT2B	HGNC	ENSG00000134245				71	0	0	57	12	17.3913
PTGFRN	0	genome.wustl.edu	37	1	117491914	117491914	+	Silent	SNP	C	C	T			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	1	117491914	117491914	C	T	SNP	PTGFRN	ENST00000393203	human	ensembl	74_37	+1	known	silent	c.933	p.P311	0.022	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	PTGFRN	HGNC	ENSG00000134247				107	0	0	114	9	7.31707
PIAS3	0	genome.wustl.edu	37	1	145584516	145584516	+	Silent	SNP	C	C	T			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	1	145584516	145584516	C	T	SNP	PIAS3	ENST00000393045	human	ensembl	74_37	+1	known	silent	c.1483	p.L495	1.000	NULL	pfam_Znf_MIZ,smart_SAP_dom,pfscan_Znf_MIZ,pfscan_SAP_dom	-	no_errors	PIAS3	HGNC	ENSG00000131788				139	0	0	124	9	6.76692
OTUD7B	0	genome.wustl.edu	37	1	149921651	149921651	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	1	149921651	149921651	T	C	SNP	OTUD7B	ENST00000369135	human	ensembl	74_37	-1	known	missense	c.1004	p.Y335C	1.000	pfam_OTU,pfscan_OTU	pfam_OTU,superfamily_UBA-like,smart_Znf_A20,pfscan_OTU,pfscan_Znf_A20	-	no_errors	OTUD7B	HGNC	ENSG00000163113				42	0	0	43	8	15.6863
ESPNP	0	genome.wustl.edu	37	1	17017717	17017717	+	RNA	SNP	C	C	T			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	1	17017717	17017717	C	T	SNP	ESPNP	ENST00000492551	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ESPNP	HGNC	ENSG00000268869				20	0	0	23	9	28.125
PRSS38	0	genome.wustl.edu	37	1	228003436	228003436	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	1	228003436	228003436	G	A	SNP	PRSS38	ENST00000366757	human	ensembl	74_37	+1	known	missense	c.19	p.V7I	0.002	NULL	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	PRSS38	HGNC	ENSG00000185888				20	0	0	14	6	30
MTF2	0	genome.wustl.edu	37	1	93594899	93594899	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	1	93594899	93594899	C	T	SNP	MTF2	ENST00000370298	human	ensembl	74_37	+1	known	missense	c.1054	p.P352S	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Tudor,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	MTF2	HGNC	ENSG00000143033				113	0	0	95	13	12.037
LOXL4	0	genome.wustl.edu	37	10	100015439	100015439	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	10	100015439	100015439	G	A	SNP	LOXL4	ENST00000260702	human	ensembl	74_37	-1	known	missense	c.1486	p.R496C	1.000	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_Lysyl_oxidase,pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_Lysyl_oxidase,prints_SRCR	-	no_errors	LOXL4	HGNC	ENSG00000138131				45	0	0	40	4	9.09091
HPSE2	0	genome.wustl.edu	37	10	100481463	100481463	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	10	100481463	100481463	C	A	SNP	HPSE2	ENST00000370552	human	ensembl	74_37	-1	known	missense	c.907	p.G303C	1.000	pfam_Glyco_hydro_79,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_79,superfamily_Glycoside_hydrolase_SF	-	no_errors	HPSE2	HGNC	ENSG00000172987				68	0	0	57	6	9.52381
CNNM2	0	genome.wustl.edu	37	10	104679833	104679833	+	Silent	SNP	C	C	T			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	10	104679833	104679833	C	T	SNP	CNNM2	ENST00000369878	human	ensembl	74_37	+1	known	silent	c.1596	p.D532	1.000	NULL	pfam_DUF21,superfamily_cNMP-bd-like	-	no_errors	CNNM2	HGNC	ENSG00000148842				132	0	0	157	23	12.7778
SLK	0	genome.wustl.edu	37	10	105750529	105750529	+	Silent	SNP	T	T	C			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	10	105750529	105750529	T	C	SNP	SLK	ENST00000369755	human	ensembl	74_37	+1	known	silent	c.247	p.L83	0.989	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_PKK,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UVR_dom,pfscan_Prot_kinase_dom	-	no_errors	SLK	HGNC	ENSG00000065613				58	0	0	47	16	25.3968
BTBD16	0	genome.wustl.edu	37	10	124089067	124089067	+	Silent	SNP	T	T	C			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	10	124089067	124089067	T	C	SNP	BTBD16	ENST00000368994	human	ensembl	74_37	+1	known	silent	c.987	p.R329	0.603	NULL	superfamily_BTB/POZ_fold	-	no_errors	BTBD16	HGNC	ENSG00000138152				44	0	0	39	5	11.3636
PPP2R2D	0	genome.wustl.edu	37	10	133761176	133761176	+	Splice_Site	SNP	G	G	A			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	10	133761176	133761176	G	A	SNP	PPP2R2D	ENST00000422256	human	ensembl	74_37	+1	known	splice_site	c.279+1	e3+1	1.000	-	-	-	no_errors	PPP2R2D	HGNC	ENSG00000175470				56	0	0	64	8	11.1111
ZNF248	0	genome.wustl.edu	37	10	38121178	38121178	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	10	38121178	38121178	G	T	SNP	ZNF248	ENST00000357328	human	ensembl	74_37	-1	known	missense	c.1105	p.Q369K	0.421	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF248	HGNC	ENSG00000198105				124	0	0	145	10	6.45161
GRID1	0	genome.wustl.edu	37	10	87407072	87407072	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	10	87407072	87407072	T	C	SNP	GRID1	ENST00000327946	human	ensembl	74_37	-1	known	missense	c.2080	p.K694E	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRID1	HGNC	ENSG00000182771				338	1	0.294985	338	37	9.86667
MYOD1	0	genome.wustl.edu	37	11	17741344	17741344	+	Silent	SNP	G	G	A			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	11	17741344	17741344	G	A	SNP	MYOD1	ENST00000250003	human	ensembl	74_37	+1	known	silent	c.15	p.S5	0.998	smart_Basic	pfam_Basic,pfam_Myf5,pfam_bHLH_dom,superfamily_bHLH_dom,smart_Basic,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MYOD1	HGNC	ENSG00000129152				44	0	0	34	4	10.5263
SHANK2	0	genome.wustl.edu	37	11	70333139	70333139	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	11	70333139	70333139	G	A	SNP	SHANK2	ENST00000338508	human	ensembl	74_37	-1	known	missense	c.3262	p.R1088C	0.712	NULL	pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK2	HGNC	ENSG00000162105				33	0	0	25	4	13.7931
C2CD3	0	genome.wustl.edu	37	11	73789208	73789208	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	11	73789208	73789208	C	T	SNP	C2CD3	ENST00000334126	human	ensembl	74_37	-1	known	missense	c.4555	p.D1519N	1.000	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom	-	no_errors	C2CD3	HGNC	ENSG00000168014				91	0	0	97	8	7.61905
CACNA1C	0	genome.wustl.edu	37	12	2706664	2706664	+	Splice_Site	SNP	T	T	C			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	12	2706664	2706664	T	C	SNP	CACNA1C	ENST00000347598	human	ensembl	74_37	+1	known	splice_site	c.2913+2	e22+2	1.000	-	-	-	no_errors	CACNA1C	HGNC	ENSG00000151067				35	0	0	35	6	14.6341
MMP19	0	genome.wustl.edu	37	12	56232293	56232293	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	12	56232293	56232293	T	G	SNP	MMP19	ENST00000394182	human	ensembl	74_37	-1	known	missense	c.28	p.S10R	0.013	smart_Hemopexin-like_repeat	pfam_Hemopexin-like_repeat,superfamily_Hemopexin-like_dom,smart_Hemopexin-like_repeat	-	no_errors	MMP19	HGNC	ENSG00000123342				38	0	0	36	4	10
VWF	0	genome.wustl.edu	37	12	6122735	6122735	+	Silent	SNP	G	G	A			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	12	6122735	6122735	G	A	SNP	VWF	ENST00000261405	human	ensembl	74_37	-1	known	silent	c.5532	p.G1844	0.000	pirsf_VWF,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pirsf_VWF,pfam_VWF_type-D,pfam_VWF_A,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_VWF_A,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_A,pfscan_VWF_C	-	no_errors	VWF	HGNC	ENSG00000110799				62	0	0	62	14	18.4211
HHIPL1	0	genome.wustl.edu	37	14	100135215	100135215	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	14	100135215	100135215	G	A	SNP	HHIPL1	ENST00000357223	human	ensembl	74_37	+1	known	missense	c.1777	p.V593M	0.012	NULL	pfam_Folate_rcpt-like,pfam_Glc/Sorbosone_DH,superfamily_Quinoprot_gluc/sorb_DH	-	no_errors	HHIPL1	HGNC	ENSG00000182218				45	0	0	31	5	13.8889
SCFD1	0	genome.wustl.edu	37	14	31191756	31191756	+	Silent	SNP	C	C	T			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	14	31191756	31191756	C	T	SNP	SCFD1	ENST00000458591	human	ensembl	74_37	+1	known	silent	c.1827	p.D609	1.000	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	SCFD1	HGNC	ENSG00000092108				50	0	0	49	15	23.4375
NUTM1	0	genome.wustl.edu	37	15	34647250	34647250	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	15	34647250	34647250	T	G	SNP	NUTM1	ENST00000333756	human	ensembl	74_37	+1	known	missense	c.1307	p.L436R	0.998	NULL	NULL	-	no_errors	NUTM1	HGNC	ENSG00000184507				128	0	0	95	42	30.6569
ADAMTSL3	0	genome.wustl.edu	37	15	84566718	84566718	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	15	84566718	84566718	G	T	SNP	ADAMTSL3	ENST00000286744	human	ensembl	74_37	+1	known	nonsense	c.1576	p.E526*	1.000	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTSL3	HGNC	ENSG00000156218				103	1	0.961538	67	29	30.2083
SALL1	0	genome.wustl.edu	37	16	51175484	51175484	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	16	51175484	51175484	C	T	SNP	SALL1	ENST00000251020	human	ensembl	74_37	-1	known	missense	c.649	p.G217S	0.001	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL1	HGNC	ENSG00000103449				76	0	0	62	5	7.46269
SF3B3	0	genome.wustl.edu	37	16	70602310	70602310	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	16	70602310	70602310	A	T	SNP	SF3B3	ENST00000302516	human	ensembl	74_37	+1	known	missense	c.3077	p.D1026V	1.000	pfam_Cleavage/polyA-sp_fac_asu_C,superfamily_WD40_repeat_dom	pfam_Cleavage/polyA-sp_fac_asu_C,superfamily_WD40_repeat_dom	-	no_errors	SF3B3	HGNC	ENSG00000189091				61	0	0	53	4	7.01754
NPIPB15	0	genome.wustl.edu	37	16	74425446	74425446	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	16	74425446	74425446	C	T	SNP	NPIPB15	ENST00000429990	human	ensembl	74_37	+1	known	missense	c.800	p.P267L	0.000	NULL	NULL	-	no_errors	NPIPB15	HGNC	ENSG00000196436				125	0	0	138	10	6.75676
UBTF	0	genome.wustl.edu	37	17	42290195	42290195	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	17	42290195	42290195	G	A	SNP	UBTF	ENST00000302904	human	ensembl	74_37	-1	known	missense	c.652	p.R218W	1.000	pfam_HMG_box_dom,superfamily_HMG_box_dom,superfamily_ARM-type_fold,smart_HMG_box_dom,pfscan_HMG_box_dom	pfam_HMG_box_dom,superfamily_HMG_box_dom,superfamily_ARM-type_fold,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	UBTF	HGNC	ENSG00000108312				115	0	0	114	6	5
TM4SF5	0	genome.wustl.edu	37	17	4675218	4675218	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	17	4675218	4675218	A	T	SNP	TM4SF5	ENST00000270560	human	ensembl	74_37	+1	known	missense	c.1	p.M1L	0.996	pfam_L6_membrane	pfam_L6_membrane	-	no_errors	TM4SF5	HGNC	ENSG00000142484				157	0	0	137	15	9.86842
TBC1D3P2	0	genome.wustl.edu	37	17	60342186	60342186	+	RNA	SNP	T	T	C			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	17	60342186	60342186	T	C	SNP	TBC1D3P2	ENST00000581291	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.062	-	-	-	no_errors	TBC1D3P2	HGNC	ENSG00000188755				15	0	0	24	3	11.1111
TBC1D3P2	0	genome.wustl.edu	37	17	60342197	60342197	+	RNA	SNP	T	T	C			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	17	60342197	60342197	T	C	SNP	TBC1D3P2	ENST00000581291	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.153	-	-	-	no_errors	TBC1D3P2	HGNC	ENSG00000188755				14	0	0	32	3	8.57143
CACNG5	0	genome.wustl.edu	37	17	64881015	64881015	+	Silent	SNP	G	G	A			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	17	64881015	64881015	G	A	SNP	CACNG5	ENST00000169565	human	ensembl	74_37	+1	known	silent	c.807	p.S269	0.000	NULL	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_gsu,prints_VDCC_g5su	-	no_errors	CACNG5	HGNC	ENSG00000075429				43	0	0	33	16	32.6531
TP53	0	genome.wustl.edu	37	17	7578208	7578208	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	17	7578208	7578208	T	C	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.641	p.H214R	0.999	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				45	0	0	34	12	26.087
SIGLEC7	0	genome.wustl.edu	37	19	51645712	51645712	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	19	51645712	51645712	C	T	SNP	SIGLEC7	ENST00000317643	human	ensembl	74_37	+1	known	missense	c.86	p.T29M	0.001	NULL	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	SIGLEC7	HGNC	ENSG00000168995				44	0	0	26	11	29.7297
IL18RAP	0	genome.wustl.edu	37	2	103059744	103059744	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	2	103059744	103059744	C	A	SNP	IL18RAP	ENST00000264260	human	ensembl	74_37	+1	known	missense	c.881	p.S294Y	0.005	smart_Ig_sub,pfscan_Ig-like_dom	pfam_TIR_dom,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like_dom	-	no_errors	IL18RAP	HGNC	ENSG00000115607				73	0	0	88	5	5.37634
POTEE	0	genome.wustl.edu	37	2	131976213	131976213	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	2	131976213	131976213	G	A	SNP	POTEE	ENST00000356920	human	ensembl	74_37	+1	known	missense	c.238	p.V80M	0.001	NULL	pfam_Actin-related,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Actin-related,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Actin-related	-	no_errors	POTEE	HGNC	ENSG00000188219				245	1	0.406504	156	47	23.1527
LRP1B	0	genome.wustl.edu	37	2	141707814	141707814	+	Silent	SNP	A	A	G			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	2	141707814	141707814	A	G	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	silent	c.3126	p.C1042	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				21	0	0	22	7	24.1379
SCN9A	0	genome.wustl.edu	37	2	167133781	167133781	+	Silent	SNP	T	T	A			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	2	167133781	167133781	T	A	SNP	SCN9A	ENST00000303354	human	ensembl	74_37	-1	known	silent	c.2589	p.S863	0.058	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN9A	HGNC	ENSG00000169432				152	0	0	146	22	13.0952
ITGA4	0	genome.wustl.edu	37	2	182360534	182360534	+	Silent	SNP	C	C	T			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	2	182360534	182360534	C	T	SNP	ITGA4	ENST00000397033	human	ensembl	74_37	+1	known	silent	c.1410	p.D470	0.880	pfam_Integrin_alpha-2,smart_Int_alpha_beta-p,prints_Integrin_alpha	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA4	HGNC	ENSG00000115232				77	0	0	74	14	15.9091
PMS1	0	genome.wustl.edu	37	2	190660534	190660534	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	2	190660534	190660534	G	A	SNP	PMS1	ENST00000441310	human	ensembl	74_37	+1	known	missense	c.172	p.G58R	1.000	pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,tigrfam_DNA_mismatch_repair_N	pfam_DNA_mismatch_repair_C,pfam_HMG_box_dom,pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom,tigrfam_DNA_mismatch_repair_N	-	no_errors	PMS1	HGNC	ENSG00000064933				61	0	0	70	15	17.6471
ABCA12	0	genome.wustl.edu	37	2	215884380	215884380	+	Silent	SNP	C	C	T			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	2	215884380	215884380	C	T	SNP	ABCA12	ENST00000272895	human	ensembl	74_37	-1	known	silent	c.1428	p.A476	0.963	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA12	HGNC	ENSG00000144452				57	0	0	45	12	21.0526
STON1-GTF2A1L	0	genome.wustl.edu	37	2	48848413	48848413	+	Silent	SNP	A	A	T			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	2	48848413	48848413	A	T	SNP	STON1-GTF2A1L	ENST00000309827	human	ensembl	74_37	+1	known	silent	c.2343	p.T781	0.024	pfam_TFIIA_asu/bsu	pfam_TFIIA_asu/bsu,pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,superfamily_TFIIA_b-brl,superfamily_TFIIA_a-hlx,pfscan_Clathrin_mu_C,pfscan_SHD	-	no_errors	STON1-GTF2A1L	HGNC	ENSG00000068781				63	0	0	59	7	10.6061
BCL11A	0	genome.wustl.edu	37	2	60688090	60688090	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	2	60688090	60688090	C	G	SNP	BCL11A	ENST00000335712	human	ensembl	74_37	-1	known	missense	c.1957	p.E653Q	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BCL11A	HGNC	ENSG00000119866				45	0	0	32	3	8.57143
TSGA10	0	genome.wustl.edu	37	2	99725896	99725896	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	2	99725896	99725896	G	A	SNP	TSGA10	ENST00000355053	human	ensembl	74_37	-1	known	nonsense	c.7	p.R3*	0.986	NULL	NULL	-	no_errors	TSGA10	HGNC	ENSG00000135951				73	0	0	77	9	10.4651
PYGB	0	genome.wustl.edu	37	20	25252030	25252030	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	20	25252030	25252030	G	A	SNP	PYGB	ENST00000216962	human	ensembl	74_37	+1	known	missense	c.436	p.D146N	1.000	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	-	no_errors	PYGB	HGNC	ENSG00000100994				102	0	0	116	34	22.6667
L3MBTL1	0	genome.wustl.edu	37	20	42169439	42169439	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	20	42169439	42169439	G	A	SNP	L3MBTL1	ENST00000418998	human	ensembl	74_37	+1	known	missense	c.2312	p.R771H	0.988	superfamily_SAM/pointed	pfam_Mbt,pfam_Znf_C2HC,superfamily_SAM/pointed,smart_Mbt,pfscan_Mbt	-	no_errors	L3MBTL1	HGNC	ENSG00000185513				53	0	0	42	10	19.2308
ADARB1	0	genome.wustl.edu	37	21	46596225	46596225	+	Silent	SNP	C	C	T			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	21	46596225	46596225	C	T	SNP	ADARB1	ENST00000360697	human	ensembl	74_37	+1	known	silent	c.609	p.S203	0.002	NULL	pfam_A_deamin,pfam_dsRNA-bd_dom,superfamily_Cytokine_IL1-like,smart_dsRNA-bd_dom,smart_A_deamin,pfscan_dsRNA-bd_dom,pfscan_A_deamin	-	no_errors	ADARB1	HGNC	ENSG00000197381				40	0	0	23	4	14.8148
CD96	0	genome.wustl.edu	37	3	111264125	111264125	+	Silent	SNP	G	G	A			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	3	111264125	111264125	G	A	SNP	CD96	ENST00000283285	human	ensembl	74_37	+1	known	silent	c.294	p.G98	0.000	smart_Ig_sub	smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	CD96	HGNC	ENSG00000153283				74	0	0	66	6	8.33333
CCDC80	0	genome.wustl.edu	37	3	112356885	112356885	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	3	112356885	112356885	C	T	SNP	CCDC80	ENST00000206423	human	ensembl	74_37	-1	known	missense	c.1868	p.R623Q	1.000	NULL	NULL	-	no_errors	CCDC80	HGNC	ENSG00000091986				132	1	0.75188	88	26	22.807
PLS1	0	genome.wustl.edu	37	3	142416830	142416830	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	3	142416830	142416830	A	G	SNP	PLS1	ENST00000337777	human	ensembl	74_37	+1	known	missense	c.1292	p.Y431C	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_CH-domain,pfam_EF_hand_dom,superfamily_CH-domain,smart_EF_hand_dom,smart_CH-domain,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	PLS1	HGNC	ENSG00000120756				89	0	0	97	12	11.0092
PSMD2	0	genome.wustl.edu	37	3	184019833	184019833	+	Silent	SNP	T	T	C			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	3	184019833	184019833	T	C	SNP	PSMD2	ENST00000310118	human	ensembl	74_37	+1	known	silent	c.678	p.Y226	0.574	superfamily_ARM-type_fold,pirsf_26S_Psome_Rpn1	pfam_Proteasome/cyclosome_rpt,superfamily_ARM-type_fold,pirsf_26S_Psome_Rpn1	-	no_errors	PSMD2	HGNC	ENSG00000175166				89	0	0	97	6	5.82524
LINC00969	0	genome.wustl.edu	37	3	195410627	195410627	+	RNA	SNP	A	A	G			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	3	195410627	195410627	A	G	SNP	LINC00969	ENST00000414625	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	LINC00969	HGNC	ENSG00000242086				30	0	0	31	5	13.8889
LINC00969	0	genome.wustl.edu	37	3	195410640	195410640	+	RNA	SNP	T	T	C			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	3	195410640	195410640	T	C	SNP	LINC00969	ENST00000414625	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.980	-	-	-	no_errors	LINC00969	HGNC	ENSG00000242086				31	0	0	29	6	17.1429
MUC4	0	genome.wustl.edu	37	3	195506914	195506914	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	3	195506914	195506914	G	A	SNP	MUC4	ENST00000463781	human	ensembl	74_37	-1	known	missense	c.11537	p.P3846L	0.309	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EG-like_dom,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113				16	0	0	9	4	30.7692
MUC4	0	genome.wustl.edu	37	3	195509388	195509388	+	Silent	SNP	G	G	A			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	3	195509388	195509388	G	A	SNP	MUC4	ENST00000463781	human	ensembl	74_37	-1	known	silent	c.9063	p.H3021	0.852	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EG-like_dom,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113				52	0	0	71	4	5.33333
MUC4	0	genome.wustl.edu	37	3	195509402	195509402	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	3	195509402	195509402	T	C	SNP	MUC4	ENST00000463781	human	ensembl	74_37	-1	known	missense	c.9049	p.I3017V	0.962	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EG-like_dom,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113				61	0	0	67	4	5.6338
PIGZ	0	genome.wustl.edu	37	3	196675340	196675340	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	3	196675340	196675340	G	A	SNP	PIGZ	ENST00000412723	human	ensembl	74_37	-1	known	missense	c.428	p.A143V	0.006	pfam_GPI_mannosylTrfase	pfam_GPI_mannosylTrfase	-	no_errors	PIGZ	HGNC	ENSG00000119227				24	0	0	17	5	22.7273
TIGD2	0	genome.wustl.edu	37	4	90034294	90034294	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	4	90034294	90034294	A	G	SNP	TIGD2	ENST00000317005	human	ensembl	74_37	+1	known	missense	c.169	p.N57D	0.945	superfamily_Homeodomain-like	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,pfam_HTH_Psq,superfamily_Homeodomain-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_HTH_Psq	-	no_errors	TIGD2	HGNC	ENSG00000180346				111	0	0	85	21	19.8113
FAM13B	0	genome.wustl.edu	37	5	137292190	137292190	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	5	137292190	137292190	T	C	SNP	FAM13B	ENST00000425075	human	ensembl	74_37	-1	known	missense	c.1129	p.M377V	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,pfscan_RhoGAP_dom	-	no_errors	FAM13B	HGNC	ENSG00000031003				20	0	0	15	3	16.6667
ETF1	0	genome.wustl.edu	37	5	137844018	137844018	+	Silent	SNP	T	T	C			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	5	137844018	137844018	T	C	SNP	ETF1	ENST00000360541	human	ensembl	74_37	-1	known	silent	c.1290	p.E430	1.000	NULL	pfam_eRF1_2,pfam_eRF1_3,pfam_eRF1_1_Pelota,superfamily_Release_factor_eRF1/aRF1_N,tigrfam_Peptide_chain-rel_eRF1/aRF1	-	no_errors	ETF1	HGNC	ENSG00000120705				31	0	0	43	4	8.51064
STK10	0	genome.wustl.edu	37	5	171523475	171523475	+	Silent	SNP	G	G	A			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	5	171523475	171523475	G	A	SNP	STK10	ENST00000176763	human	ensembl	74_37	-1	known	silent	c.960	p.D320	0.937	superfamily_Kinase-like_dom	pfam_PKK,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	STK10	HGNC	ENSG00000072786				86	0	0	61	9	12.8571
GPR98	0	genome.wustl.edu	37	5	90074406	90074406	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	5	90074406	90074406	C	T	SNP	GPR98	ENST00000405460	human	ensembl	74_37	+1	known	nonsense	c.12829	p.R4277*	0.229	pfam_Calx_beta,smart_Calx_beta	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199				51	0	0	29	12	29.2683
MICAL1	0	genome.wustl.edu	37	6	109775345	109775345	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	6	109775345	109775345	G	A	SNP	MICAL1	ENST00000368952	human	ensembl	74_37	-1	known	nonsense	c.112	p.Q38*	1.000	NULL	pfam_DUF3585,pfam_CH-domain,pfam_Znf_LIM,pfam_mOase_FAD-bd,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM	-	no_errors	MICAL1	HGNC	ENSG00000135596				12	0	0	10	2	16.6667
HIST1H2AD	0	genome.wustl.edu	37	6	26199399	26199399	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	6	26199399	26199399	G	A	SNP	HIST1H2AD	ENST00000341023	human	ensembl	74_37	-1	known	nonsense	c.73	p.Q25*	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AD	HGNC	ENSG00000196866				37	0	0	17	3	15
CDYL	0	genome.wustl.edu	37	6	4892004	4892004	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	6	4892004	4892004	C	T	SNP	CDYL	ENST00000328908	human	ensembl	74_37	+1	known	missense	c.244	p.R82W	1.000	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	pfam_Crotonase_core_superfam,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CDYL	HGNC	ENSG00000153046				54	0	0	60	31	34.0659
TPBG	0	genome.wustl.edu	37	6	83075655	83075655	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	6	83075655	83075655	C	T	SNP	TPBG	ENST00000369750	human	ensembl	74_37	+1	known	missense	c.977	p.P326L	1.000	pfam_Cys-rich_flank_reg_C,smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	TPBG	HGNC	ENSG00000146242				95	0	0	119	9	7.03125
RBM28	0	genome.wustl.edu	37	7	127978360	127978360	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	7	127978360	127978360	T	C	SNP	RBM28	ENST00000223073	human	ensembl	74_37	-1	known	missense	c.485	p.K162R	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM28	HGNC	ENSG00000106344				58	0	0	52	23	30.6667
NPY	0	genome.wustl.edu	37	7	24325011	24325011	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	7	24325011	24325011	C	T	SNP	NPY	ENST00000242152	human	ensembl	74_37	+1	known	missense	c.152	p.A51V	1.000	pfam_Pancreatic_hormone-like,smart_Pancreatic_hormone-like,pfscan_Pancreatic_hormone-like,prints_Pancreatic_hormone-like	pfam_Pancreatic_hormone-like,smart_Pancreatic_hormone-like,pfscan_Pancreatic_hormone-like,prints_Pancreatic_hormone-like	-	no_errors	NPY	HGNC	ENSG00000122585				36	0	0	19	6	24
BUD31	0	genome.wustl.edu	37	7	99015162	99015162	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	7	99015162	99015162	G	C	SNP	BUD31	ENST00000222969	human	ensembl	74_37	+1	known	missense	c.328	p.D110H	1.000	pfam_G10,prints_G10	pfam_G10,prints_G10	-	no_errors	BUD31	HGNC	ENSG00000106245				71	0	0	68	7	9.33333
DCAF13	0	genome.wustl.edu	37	8	104452417	104452417	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	8	104452417	104452417	C	T	SNP	DCAF13	ENST00000297579	human	ensembl	74_37	+1	known	missense	c.1460	p.S487F	0.952	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Sof1,pfam_WD40_repeat,pfam_TIF_beta_prop-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF13	HGNC	ENSG00000164934				116	0	0	139	10	6.71141
NEIL2	0	genome.wustl.edu	37	8	11643642	11643642	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	8	11643642	11643642	C	T	SNP	NEIL2	ENST00000284503	human	ensembl	74_37	+1	known	nonsense	c.859	p.Q287*	1.000	pfscan_Znf_DNA_glyclase/AP_lyase	pfam_DNA_glyclase/AP_lyase_DNA-bd,pfam_DNA_glycosylase/AP_lyase_cat,superfamily_Ribosomal_S13-like_H2TH,pfscan_Znf_DNA_glyclase/AP_lyase,pfscan_DNA_glycosylase/AP_lyase_cat	-	no_errors	NEIL2	HGNC	ENSG00000154328				50	0	0	292	25	7.88644
BRF2	0	genome.wustl.edu	37	8	37702081	37702081	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	8	37702081	37702081	G	A	SNP	BRF2	ENST00000220659	human	ensembl	74_37	-1	known	missense	c.1187	p.P396L	0.984	NULL	pfam_Znf_TFIIB,superfamily_Cyclin-like,pfscan_Znf_TFIIB	-	no_errors	BRF2	HGNC	ENSG00000104221				43	0	0	32	3	8.57143
ZNF704	0	genome.wustl.edu	37	8	81553643	81553643	+	Silent	SNP	G	G	A			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	8	81553643	81553643	G	A	SNP	ZNF704	ENST00000327835	human	ensembl	74_37	-1	known	silent	c.1197	p.T399	0.119	NULL	pfscan_Znf_C2H2	-	no_errors	ZNF704	HGNC	ENSG00000164684				25	0	0	35	5	12.5
FCN1	0	genome.wustl.edu	37	9	137805455	137805455	+	Silent	SNP	G	G	A			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	9	137805455	137805455	G	A	SNP	FCN1	ENST00000371806	human	ensembl	74_37	-1	known	silent	c.312	p.D104	0.000	pfam_Collagen	pfam_Fibrinogen_a/b/g_C_dom,pfam_Collagen,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	FCN1	HGNC	ENSG00000085265				20	0	0	18	4	18.1818
IFNB1	0	genome.wustl.edu	37	9	21077680	21077680	+	Silent	SNP	C	C	T			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	9	21077680	21077680	C	T	SNP	IFNB1	ENST00000380232	human	ensembl	74_37	-1	known	silent	c.189	p.E63	0.846	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNB1	HGNC	ENSG00000171855				74	0	0	83	12	12.6316
TEK	0	genome.wustl.edu	37	9	27158095	27158095	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	9	27158095	27158095	C	T	SNP	TEK	ENST00000380036	human	ensembl	74_37	+1	known	nonsense	c.319	p.R107*	1.000	pfam_Tyr_kin_Tie2_Ig-like_dom-1_N	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Tyr_kin_Tie2_Ig-like_dom-1_N,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TEK	HGNC	ENSG00000120156				110	0	0	106	10	8.62069
DCAF12	0	genome.wustl.edu	37	9	34089583	34089583	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	9	34089583	34089583	G	A	SNP	DCAF12	ENST00000361264	human	ensembl	74_37	-1	known	missense	c.1030	p.R344W	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF12	HGNC	ENSG00000198876				44	0	0	42	7	14.2857
LOC100996870	0	genome.wustl.edu	37	9	66468632	66468632	+	RNA	SNP	T	T	C			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	9	66468632	66468632	T	C	SNP	LOC100996870	ENST00000424345	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.016	-	-	-	no_errors	RP11-262H14.1	Clone_based_vega_gene	ENSG00000238113				19	0	0	15	3	16.6667
MAGEC1	0	genome.wustl.edu	37	X	140996328	140996328	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	X	140996328	140996328	A	C	SNP	MAGEC1	ENST00000285879	human	ensembl	74_37	+1	known	missense	c.3138	p.K1046N	0.031	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC1	HGNC	ENSG00000155495				156	0	0	126	19	13.1034
PRRX1	0	genome.wustl.edu	37	1	170688997	170688997	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	1	170688997	170688997	A	-	DEL	PRRX1	ENST00000239461	human	ensembl	74_37	+1	known	frame_shift_del	c.372	p.E125fs	0.892	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_OAR_dom,pfscan_Homeobox_dom	-	no_errors	PRRX1	HGNC	ENSG00000116132				73	0	0	68	18	20.9302
DOK5	0	genome.wustl.edu	37	20	53171572	53171574	+	In_Frame_Del	DEL	ATC	ATC	-			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	ATC	ATC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	20	53171572	53171574	ATC	-	DEL	DOK5	ENST00000262593	human	ensembl	74_37	+1	known	in_frame_del	c.167_169	p.H57in_frame_del	1.000:0.988:1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology	pfam_Insln_rcpt_S1,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	-	no_errors	DOK5	HGNC	ENSG00000101134				66	0	0	77	8	9.41176
ENSG00000254160	0	genome.wustl.edu	37	8	1197072	1197073	+	RNA	INS	-	-	A			TCGA-BR-4255-01A-01D-1126-08	TCGA-BR-4255-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5c499388-9598-428d-a9b1-1808ce877345	f818c68d-6465-4ea9-a617-1e95a6b5ad0b	8	1197072	1197073	-	A	INS	ENSG00000254160	ENST00000517950	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.945:0.955	-	-	-	no_errors	CTD-2281E23.3	Clone_based_vega_gene	ENSG00000254160				23	0	0	18	4	18.1818
