Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
WDR47	0	genome.wustl.edu	37	1	109538449	109538449	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	109538449	109538449	T	C	SNP	WDR47	ENST00000400794	human	ensembl	74_37	-1	known	missense	c.1468	p.K490E	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_CTLH_C,smart_WD40_repeat,pfscan_LisH_dimerisation,pfscan_CTLH_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR47	HGNC	ENSG00000085433				72	0	0	84	21	20
KCNA3	0	genome.wustl.edu	37	1	111216731	111216731	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	111216731	111216731	C	T	SNP	KCNA3	ENST00000369769	human	ensembl	74_37	-1	known	missense	c.701	p.R234Q	1.000	prints_K_chnl,prints_K_chnl_volt-dep_Kv1	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.3,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA3	HGNC	ENSG00000177272				44	0	0	24	4	14.2857
PIFO	0	genome.wustl.edu	37	1	111891167	111891167	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	111891167	111891167	G	T	SNP	PIFO	ENST00000369738	human	ensembl	74_37	+1	known	missense	c.288	p.Q96H	0.717	NULL	NULL	-	no_errors	PIFO	HGNC	ENSG00000173947				277	0	0	252	58	18.7097
IGSF3	0	genome.wustl.edu	37	1	117127667	117127667	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	117127667	117127667	G	A	SNP	IGSF3	ENST00000318837	human	ensembl	74_37	-1	known	silent	c.2508	p.R836	1.000	pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	IGSF3	HGNC	ENSG00000143061				34	0	0	28	8	22.2222
MTHFR	0	genome.wustl.edu	37	1	11856376	11856376	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	11856376	11856376	C	T	SNP	MTHFR	ENST00000376583	human	ensembl	74_37	-1	known	missense	c.790	p.D264N	1.000	pfam_Mehydrof_redctse,tigrfam_Fadh2_euk	pfam_Mehydrof_redctse,tigrfam_Fadh2_euk	-	no_errors	MTHFR	HGNC	ENSG00000177000				295	0	0	258	26	9.15493
MFN2	0	genome.wustl.edu	37	1	12058853	12058853	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	12058853	12058853	T	C	SNP	MFN2	ENST00000235329	human	ensembl	74_37	+1	known	missense	c.626	p.L209P	1.000	pfam_Dynamin_GTPase,superfamily_P-loop_NTPase	pfam_Fzo/mitofusin_HR2,pfam_Dynamin_GTPase,superfamily_P-loop_NTPase	-	no_errors	MFN2	HGNC	ENSG00000116688				258	1	0.3861	277	44	13.7072
VPS13D	0	genome.wustl.edu	37	1	12371978	12371978	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	12371978	12371978	G	A	SNP	VPS13D	ENST00000358136	human	ensembl	74_37	+1	known	missense	c.6931	p.A2311T	1.000	NULL	pfam_VPSAP_dom,pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	VPS13D	HGNC	ENSG00000048707				44	0	0	40	7	14.8936
AADACL3	0	genome.wustl.edu	37	1	12785289	12785289	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	12785289	12785289	C	T	SNP	AADACL3	ENST00000359318	human	ensembl	74_37	+1	known	missense	c.379	p.P127S	1.000	pfam_AB_hydrolase_3	pfam_AB_hydrolase_3	-	no_errors	AADACL3	HGNC	ENSG00000188984				103	0	0	77	6	7.22892
PRAMEF10	0	genome.wustl.edu	37	1	12954532	12954532	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	12954532	12954532	C	T	SNP	PRAMEF10	ENST00000235347	human	ensembl	74_37	-1	known	missense	c.751	p.V251I	0.001	NULL	NULL	-	no_errors	PRAMEF10	HGNC	ENSG00000187545				195	0	0	195	26	11.7647
PRDM2	0	genome.wustl.edu	37	1	14107072	14107072	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	14107072	14107072	G	A	SNP	PRDM2	ENST00000235372	human	ensembl	74_37	+1	known	missense	c.2782	p.G928S	0.002	pirsf_RIZ_retinblastoma-bd_prot	pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pirsf_RIZ_retinblastoma-bd_prot,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM2	HGNC	ENSG00000116731				113	0	0	127	13	9.28571
ATAD3B	0	genome.wustl.edu	37	1	1430883	1430883	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	1430883	1430883	A	G	SNP	ATAD3B	ENST00000308647	human	ensembl	74_37	+1	known	missense	c.1633	p.K545E	0.998	superfamily_P-loop_NTPase	pfam_DUF3523,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	ATAD3B	HGNC	ENSG00000160072				77	0	0	54	12	18.1818
C1orf56	0	genome.wustl.edu	37	1	151020433	151020433	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	151020433	151020433	G	A	SNP	C1orf56	ENST00000368926	human	ensembl	74_37	+1	known	missense	c.110	p.S37N	0.002	NULL	superfamily_Thrombospondin_1_rpt	-	no_errors	C1orf56	HGNC	ENSG00000143443				16	0	0	13	3	18.75
C1orf56	0	genome.wustl.edu	37	1	151021230	151021230	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	151021230	151021230	G	A	SNP	C1orf56	ENST00000368926	human	ensembl	74_37	+1	known	missense	c.907	p.A303T	0.000	NULL	superfamily_Thrombospondin_1_rpt	-	no_errors	C1orf56	HGNC	ENSG00000143443				106	1	0.934579	89	17	16.0377
TCHH	0	genome.wustl.edu	37	1	152081442	152081442	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	152081442	152081442	G	A	SNP	TCHH	ENST00000368804	human	ensembl	74_37	-1	known	silent	c.4251	p.R1417	0.016	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	TCHH	HGNC	ENSG00000159450				98	0	0	65	9	12.1622
FLG	0	genome.wustl.edu	37	1	152282336	152282336	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	152282336	152282336	T	C	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.5026	p.S1676G	0.001	pfam_Filaggrin	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				410	0	0	387	62	13.8085
FLG2	0	genome.wustl.edu	37	1	152326950	152326950	+	Silent	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	152326950	152326950	T	C	SNP	FLG2	ENST00000388718	human	ensembl	74_37	-1	known	silent	c.3312	p.Q1104	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG2	HGNC	ENSG00000143520				337	1	0.295858	299	59	16.4804
KIAA0907	0	genome.wustl.edu	37	1	155896918	155896918	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	155896918	155896918	C	T	SNP	KIAA0907	ENST00000368321	human	ensembl	74_37	-1	known	missense	c.494	p.G165D	1.000	NULL	NULL	-	no_errors	KIAA0907	HGNC	ENSG00000132680				61	0	0	82	8	8.88889
RXFP4	0	genome.wustl.edu	37	1	155911718	155911718	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	155911718	155911718	G	A	SNP	RXFP4	ENST00000368318	human	ensembl	74_37	+1	known	missense	c.218	p.G73D	0.040	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_ATII_rcpt	-	no_errors	RXFP4	HGNC	ENSG00000173080				39	0	0	41	6	12.766
SEMA4A	0	genome.wustl.edu	37	1	156146693	156146693	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	156146693	156146693	A	G	SNP	SEMA4A	ENST00000355014	human	ensembl	74_37	+1	known	missense	c.2191	p.S731G	0.943	NULL	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom	-	no_errors	SEMA4A	HGNC	ENSG00000196189				47	0	0	46	4	8
CCT3	0	genome.wustl.edu	37	1	156288680	156288680	+	Silent	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	156288680	156288680	T	C	SNP	CCT3	ENST00000295688	human	ensembl	74_37	-1	known	silent	c.738	p.E246	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,tigrfam_Chap_CCT_gamma	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_gamma	-	no_errors	CCT3	HGNC	ENSG00000163468				55	0	0	67	8	10.6667
FCRL1	0	genome.wustl.edu	37	1	157772362	157772362	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	157772362	157772362	T	C	SNP	FCRL1	ENST00000368176	human	ensembl	74_37	-1	known	missense	c.412	p.M138V	0.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCRL1	HGNC	ENSG00000163534				52	0	0	37	8	17.7778
KIRREL	0	genome.wustl.edu	37	1	158061167	158061167	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	158061167	158061167	A	C	SNP	KIRREL	ENST00000368173	human	ensembl	74_37	+1	known	missense	c.1340	p.N447T	1.000	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	KIRREL	HGNC	ENSG00000183853				85	0	0	74	14	15.9091
CD1B	0	genome.wustl.edu	37	1	158300854	158300854	+	Splice_Site	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	158300854	158300854	T	C	SNP	CD1B	ENST00000368168	human	ensembl	74_37	-1	known	splice_site	c.62-2	e2-2	0.062	-	-	-	no_errors	CD1B	HGNC	ENSG00000158485				207	0	0	202	30	12.931
OR10K1	0	genome.wustl.edu	37	1	158435578	158435578	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	158435578	158435578	T	G	SNP	OR10K1	ENST00000289451	human	ensembl	74_37	+1	known	missense	c.227	p.V76G	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10K1	HGNC	ENSG00000173285				155	0	0	186	25	11.8483
OR10Z1	0	genome.wustl.edu	37	1	158576839	158576839	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	158576839	158576839	T	A	SNP	OR10Z1	ENST00000361284	human	ensembl	74_37	+1	known	missense	c.611	p.L204H	0.021	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10Z1	HGNC	ENSG00000198967				102	0	0	141	20	12.4224
SPTA1	0	genome.wustl.edu	37	1	158626424	158626424	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	158626424	158626424	G	A	SNP	SPTA1	ENST00000368147	human	ensembl	74_37	-1	known	missense	c.2828	p.A943V	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554				125	0	0	132	21	13.7255
SLC25A34	0	genome.wustl.edu	37	1	16064618	16064618	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	16064618	16064618	C	T	SNP	SLC25A34	ENST00000294454	human	ensembl	74_37	+1	known	missense	c.475	p.R159W	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A34	HGNC	ENSG00000162461				46	0	0	29	7	19.4444
ARHGAP30	0	genome.wustl.edu	37	1	161026197	161026197	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	161026197	161026197	C	T	SNP	ARHGAP30	ENST00000368013	human	ensembl	74_37	-1	known	missense	c.326	p.R109Q	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP30	HGNC	ENSG00000186517				31	0	0	38	5	11.6279
PVRL4	0	genome.wustl.edu	37	1	161044096	161044096	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	161044096	161044096	G	A	SNP	PVRL4	ENST00000368012	human	ensembl	74_37	-1	known	silent	c.1068	p.I356	0.158	NULL	pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PVRL4	HGNC	ENSG00000143217				59	0	0	45	8	15.0943
PVRL4	0	genome.wustl.edu	37	1	161049588	161049588	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	161049588	161049588	C	A	SNP	PVRL4	ENST00000368012	human	ensembl	74_37	-1	known	missense	c.231	p.Q77H	0.492	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PVRL4	HGNC	ENSG00000143217				49	0	0	41	6	12.766
USP21	0	genome.wustl.edu	37	1	161130992	161130992	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	161130992	161130992	G	A	SNP	USP21	ENST00000289865	human	ensembl	74_37	+1	known	missense	c.562	p.A188T	0.988	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP21	HGNC	ENSG00000143258				49	0	0	53	6	10.1695
B4GALT3	0	genome.wustl.edu	37	1	161141819	161141819	+	Silent	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	161141819	161141819	T	C	SNP	B4GALT3	ENST00000319769	human	ensembl	74_37	-1	known	silent	c.969	p.T323	0.996	pfam_Galactosyl_T_C	pfam_Galactosyl_T_C,prints_Galactosyl_T	-	no_errors	B4GALT3	HGNC	ENSG00000158850				55	0	0	71	4	5.33333
SPEN	0	genome.wustl.edu	37	1	16256110	16256110	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	16256110	16256110	G	A	SNP	SPEN	ENST00000375759	human	ensembl	74_37	+1	known	silent	c.3375	p.E1125	0.664	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC_like_C_dom,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526				57	0	0	52	8	13.3333
RGS4	0	genome.wustl.edu	37	1	163043361	163043361	+	Silent	SNP	C	C	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	163043361	163043361	C	A	SNP	RGS4	ENST00000421743	human	ensembl	74_37	+1	known	silent	c.618	p.P206	1.000	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS4	HGNC	ENSG00000117152				52	0	0	43	14	24.5614
POGK	0	genome.wustl.edu	37	1	166818499	166818499	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	166818499	166818499	A	G	SNP	POGK	ENST00000367875	human	ensembl	74_37	+1	known	missense	c.683	p.E228G	0.792	pfam_Brinker_DNA-bd	pfam_DDE_SF_endonuclease_CENPB-like,pfam_Brinker_DNA-bd,pfam_HTH_CenpB_DNA-bd_dom,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,superfamily_Homeodomain-like,smart_Krueppel-associated_box,smart_HTH_CenpB_DNA-bd_dom,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	POGK	HGNC	ENSG00000143157				63	0	0	49	9	15.5172
F5	0	genome.wustl.edu	37	1	169500040	169500040	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	169500040	169500040	T	C	SNP	F5	ENST00000367797	human	ensembl	74_37	-1	known	missense	c.5192	p.Y1731C	1.000	superfamily_Cupredoxin	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F5	HGNC	ENSG00000198734				81	0	0	84	13	13.4021
SELL	0	genome.wustl.edu	37	1	169676575	169676575	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	169676575	169676575	C	T	SNP	SELL	ENST00000236147	human	ensembl	74_37	-1	known	nonsense	c.527	p.W176*	0.000	pfam_EG-like_dom,smart_EG-like_dom,pirsf_L-selectin,pfscan_EG-like_dom	pfam_C-type_lectin,pfam_Sushi_SCR_CCP,pfam_EG-like_dom,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_C-type_lectin,smart_EG-like_dom,smart_Sushi_SCR_CCP,pirsf_L-selectin,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Sushi_SCR_CCP,prints_Selectin_superfamily	-	no_errors	SELL	HGNC	ENSG00000188404				43	0	0	57	8	12.3077
SLC9C2	0	genome.wustl.edu	37	1	173506088	173506088	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	173506088	173506088	G	A	SNP	SLC9C2	ENST00000367714	human	ensembl	74_37	-1	known	nonsense	c.1648	p.Q550*	0.136	NULL	pfam_Cation/H_exchanger,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	-	no_errors	SLC9C2	HGNC	ENSG00000162753				109	0	0	109	16	12.8
TNR	0	genome.wustl.edu	37	1	175325484	175325484	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	175325484	175325484	C	G	SNP	TNR	ENST00000263525	human	ensembl	74_37	-1	known	missense	c.3089	p.S1030T	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_Fibronectin_type3	-	no_errors	TNR	HGNC	ENSG00000116147				122	0	0	103	15	12.7119
ASTN1	0	genome.wustl.edu	37	1	176998870	176998870	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	176998870	176998870	G	A	SNP	ASTN1	ENST00000367654	human	ensembl	74_37	-1	known	silent	c.1020	p.S340	0.898	NULL	superfamily_Fibronectin_type3,smart_EG-like_dom,smart_MACPF,pfscan_Fibronectin_type3	-	no_errors	ASTN1	HGNC	ENSG00000152092				23	0	0	25	4	13.7931
SEC16B	0	genome.wustl.edu	37	1	177937025	177937025	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	177937025	177937025	C	T	SNP	SEC16B	ENST00000308284	human	ensembl	74_37	-1	known	missense	c.92	p.G31E	0.678	NULL	NULL	-	no_errors	SEC16B	HGNC	ENSG00000120341				36	0	0	35	7	16.6667
RASAL2	0	genome.wustl.edu	37	1	178389670	178389670	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	178389670	178389670	G	T	SNP	RASAL2	ENST00000367649	human	ensembl	74_37	+1	known	missense	c.589	p.G197C	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DUF3498,pfam_RasGAP,pfam_Pleckstrin_homology,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,superfamily_PP1_inhibitor,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	RASAL2	HGNC	ENSG00000075391				66	0	0	74	21	22.1053
ARHGEF10L	0	genome.wustl.edu	37	1	17983158	17983158	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	17983158	17983158	G	A	SNP	ARHGEF10L	ENST00000361221	human	ensembl	74_37	+1	known	missense	c.2815	p.A939T	1.000	superfamily_WD40_repeat_dom	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF10L	HGNC	ENSG00000074964				51	0	0	24	10	29.4118
NPL	0	genome.wustl.edu	37	1	182783988	182783988	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	182783988	182783988	C	T	SNP	NPL	ENST00000258317	human	ensembl	74_37	+1	known	missense	c.359	p.T120I	0.995	pfam_DapA-like	pfam_DapA-like,prints_DapA-like	-	no_errors	NPL	HGNC	ENSG00000135838				51	0	0	53	5	8.62069
LAMC2	0	genome.wustl.edu	37	1	183177156	183177156	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	183177156	183177156	C	T	SNP	LAMC2	ENST00000264144	human	ensembl	74_37	+1	known	missense	c.220	p.R74W	1.000	pfam_EGF_laminin,superfamily_Growth_fac_rcpt_N_dom,smart_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_B_type_IV,superfamily_Growth_fac_rcpt_N_dom,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin	-	no_errors	LAMC2	HGNC	ENSG00000058085				379	0	0	333	57	14.6154
COLGALT2	0	genome.wustl.edu	37	1	183938581	183938581	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	183938581	183938581	G	A	SNP	COLGALT2	ENST00000361927	human	ensembl	74_37	-1	known	silent	c.654	p.Y218	0.445	NULL	pfam_Glyco_trans_25	-	no_errors	COLGALT2	HGNC	ENSG00000198756				57	0	0	47	7	12.963
TPR	0	genome.wustl.edu	37	1	186305776	186305776	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	186305776	186305776	C	T	SNP	TPR	ENST00000367478	human	ensembl	74_37	-1	known	silent	c.4557	p.V1519	0.001	NULL	pfam_TPR_MLP1_2,superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	TPR	HGNC	ENSG00000047410				46	0	0	52	6	10.3448
TAS1R2	0	genome.wustl.edu	37	1	19166209	19166209	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	19166209	19166209	C	T	SNP	TAS1R2	ENST00000375371	human	ensembl	74_37	-1	novel	missense	c.2404	p.A802T	1.000	pfam_GPCR_3_C,pfscan_GPCR_3_C	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3	-	no_errors	TAS1R2	HGNC	ENSG00000179002				42	0	0	38	12	24
UBR4	0	genome.wustl.edu	37	1	19439226	19439226	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	19439226	19439226	C	A	SNP	UBR4	ENST00000375267	human	ensembl	74_37	-1	known	missense	c.11593	p.G3865C	1.000	NULL	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481				205	1	0.485437	193	29	13.0631
KCNT2	0	genome.wustl.edu	37	1	196395022	196395022	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	196395022	196395022	G	A	SNP	KCNT2	ENST00000294725	human	ensembl	74_37	-1	known	nonsense	c.1081	p.Q361*	1.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_2pore_dom_K_chnl_dom	-	no_errors	KCNT2	HGNC	ENSG00000162687				96	0	0	124	20	13.8889
CFH	0	genome.wustl.edu	37	1	196716354	196716354	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	196716354	196716354	C	T	SNP	CFH	ENST00000367429	human	ensembl	74_37	+1	known	missense	c.3607	p.R1203W	0.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFH	HGNC	ENSG00000000971				94	0	0	96	13	11.9266
CFHR4	0	genome.wustl.edu	37	1	196883716	196883716	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	196883716	196883716	C	T	SNP	CFHR4	ENST00000367416	human	ensembl	74_37	+1	known	silent	c.1269	p.Y423	0.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR4	HGNC	ENSG00000134365				76	0	0	81	19	19
ZBTB41	0	genome.wustl.edu	37	1	197145714	197145714	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	197145714	197145714	T	C	SNP	ZBTB41	ENST00000367405	human	ensembl	74_37	-1	known	missense	c.1859	p.K620R	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB41	HGNC	ENSG00000177888				76	0	0	94	19	16.8142
DENND1B	0	genome.wustl.edu	37	1	197586803	197586803	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	197586803	197586803	C	T	SNP	DENND1B	ENST00000367396	human	ensembl	74_37	-1	known	silent	c.759	p.L253	0.995	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND1B	HGNC	ENSG00000213047				72	0	0	68	7	9.33333
LHX9	0	genome.wustl.edu	37	1	197890758	197890758	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	197890758	197890758	G	A	SNP	LHX9	ENST00000367387	human	ensembl	74_37	+1	known	silent	c.702	p.A234	0.961	NULL	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LHX9	HGNC	ENSG00000143355				16	0	0	7	4	36.3636
TMCO4	0	genome.wustl.edu	37	1	20072102	20072102	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	20072102	20072102	G	A	SNP	TMCO4	ENST00000294543	human	ensembl	74_37	-1	known	missense	c.800	p.T267M	0.991	pfam_DUF726	pfam_DUF726,pfam_DUF900_hydrolase	-	no_errors	TMCO4	HGNC	ENSG00000162542				142	0	0	127	10	7.29927
NAV1	0	genome.wustl.edu	37	1	201687704	201687704	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	201687704	201687704	C	T	SNP	NAV1	ENST00000367296	human	ensembl	74_37	+1	known	silent	c.1047	p.G349	0.990	NULL	superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	NAV1	HGNC	ENSG00000134369				90	0	0	43	6	12.2449
PPP1R12B	0	genome.wustl.edu	37	1	202394751	202394751	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	202394751	202394751	G	A	SNP	PPP1R12B	ENST00000336894	human	ensembl	74_37	+1	known	missense	c.599	p.R200H	1.000	superfamily_Ankyrin_rpt-contain_dom,pirsf_Pase-1_reg_su_12A/B/C_euk,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pirsf_Pase-1_reg_su_12A/B/C_euk,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	PPP1R12B	HGNC	ENSG00000077157				271	1	0.367647	256	33	11.4187
PIK3C2B	0	genome.wustl.edu	37	1	204408163	204408163	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	204408163	204408163	C	T	SNP	PIK3C2B	ENST00000367187	human	ensembl	74_37	-1	known	missense	c.3416	p.R1139H	1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_dom,pfscan_C2_dom,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2B	HGNC	ENSG00000133056				33	0	0	37	4	9.7561
SLC45A3	0	genome.wustl.edu	37	1	205628386	205628386	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	205628386	205628386	G	A	SNP	SLC45A3	ENST00000367145	human	ensembl	74_37	-1	known	silent	c.1638	p.S546	0.459	NULL	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A3	HGNC	ENSG00000158715				65	0	0	60	4	6.25
DYRK3	0	genome.wustl.edu	37	1	206821125	206821125	+	Silent	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	206821125	206821125	T	C	SNP	DYRK3	ENST00000367109	human	ensembl	74_37	+1	known	silent	c.582	p.D194	0.832	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	DYRK3	HGNC	ENSG00000143479				146	0	0	128	21	14.094
SH2D5	0	genome.wustl.edu	37	1	21047616	21047616	+	RNA	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	21047616	21047616	G	A	SNP	SH2D5	ENST00000460804	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SH2D5	HGNC	ENSG00000189410				17	0	0	6	8	57.1429
PTPN14	0	genome.wustl.edu	37	1	214706203	214706203	+	RNA	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	214706203	214706203	T	C	SNP	PTPN14	ENST00000491277	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.356	-	-	-	no_errors	PTPN14	HGNC	ENSG00000152104				30	0	0	24	7	22.5806
HSPG2	0	genome.wustl.edu	37	1	22150185	22150185	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	22150185	22150185	G	A	SNP	HSPG2	ENST00000374695	human	ensembl	74_37	-1	known	silent	c.12927	p.V4309	0.823	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_SEA_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA_dom,pfscan_Ig-like_dom,prints_LDrepeatLR_classA_rpt	-	no_errors	HSPG2	HGNC	ENSG00000142798				44	0	0	49	14	22.2222
HSPG2	0	genome.wustl.edu	37	1	22178102	22178102	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	22178102	22178102	G	A	SNP	HSPG2	ENST00000374695	human	ensembl	74_37	-1	known	silent	c.7095	p.P2365	0.008	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_SEA_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA_dom,pfscan_Ig-like_dom,prints_LDrepeatLR_classA_rpt	-	no_errors	HSPG2	HGNC	ENSG00000142798				92	0	0	69	13	15.8537
CNIH4	0	genome.wustl.edu	37	1	224563565	224563565	+	RNA	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	224563565	224563565	G	A	SNP	CNIH4	ENST00000366860	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.955	-	-	-	no_errors	CNIH4	HGNC	ENSG00000143771				45	0	0	49	7	12.5
CNIH3	0	genome.wustl.edu	37	1	224804897	224804897	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	224804897	224804897	G	A	SNP	CNIH3	ENST00000272133	human	ensembl	74_37	+1	known	silent	c.21	p.A7	0.997	pfam_Cornichon	pfam_Cornichon	-	no_errors	CNIH3	HGNC	ENSG00000143786				299	0	0	240	42	14.8936
LBR	0	genome.wustl.edu	37	1	225591108	225591108	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	225591108	225591108	T	C	SNP	LBR	ENST00000272163	human	ensembl	74_37	-1	known	missense	c.1745	p.H582R	1.000	pfam_Ergosterol_biosynth_ERG4_ERG24,pfam_DUF1295	pfam_Ergosterol_biosynth_ERG4_ERG24,pfam_Lamin-B_rcpt_of_tudor,pfam_DUF1295,smart_Tudor	-	no_errors	LBR	HGNC	ENSG00000143815				70	0	0	71	19	21.1111
ACBD3	0	genome.wustl.edu	37	1	226353563	226353563	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	226353563	226353563	C	A	SNP	ACBD3	ENST00000366812	human	ensembl	74_37	-1	known	missense	c.425	p.R142M	1.000	pfam_Acyl-CoA-binding_protein,superfamily_Acyl-CoA-binding_protein	pfam_Acyl-CoA-binding_protein,superfamily_GOLD,superfamily_Acyl-CoA-binding_protein,pfscan_GOLD	-	no_errors	ACBD3	HGNC	ENSG00000182827				84	0	0	70	14	16.6667
WNT3A	0	genome.wustl.edu	37	1	228210569	228210569	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	228210569	228210569	C	T	SNP	WNT3A	ENST00000366753	human	ensembl	74_37	+1	known	silent	c.273	p.V91	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt3	-	no_errors	WNT3A	HGNC	ENSG00000154342				38	0	0	23	5	17.8571
OBSCN	0	genome.wustl.edu	37	1	228493068	228493068	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	228493068	228493068	G	A	SNP	OBSCN	ENST00000366707	human	ensembl	74_37	+1	known	silent	c.4542	p.S1514	0.000	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_DH-domain,pfam_Fibronectin_type3,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				152	0	0	122	15	10.9489
TTC13	0	genome.wustl.edu	37	1	231060632	231060632	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	231060632	231060632	A	G	SNP	TTC13	ENST00000366661	human	ensembl	74_37	-1	known	missense	c.1676	p.L559S	1.000	NULL	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC13	HGNC	ENSG00000143643				128	0	0	102	12	10.5263
EPHB2	0	genome.wustl.edu	37	1	23191603	23191603	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	23191603	23191603	C	A	SNP	EPHB2	ENST00000400191	human	ensembl	74_37	+1	known	missense	c.1201	p.H401N	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHB2	HGNC	ENSG00000133216				85	0	0	68	18	20.9302
ERO1LB	0	genome.wustl.edu	37	1	236389790	236389790	+	Silent	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	236389790	236389790	T	C	SNP	ERO1LB	ENST00000354619	human	ensembl	74_37	-1	known	silent	c.831	p.G277	0.999	pfam_Ero1,pirsf_Ero1	pfam_Ero1,pirsf_Ero1	-	no_errors	ERO1LB	HGNC	ENSG00000086619				74	0	0	63	20	24.0964
HEATR1	0	genome.wustl.edu	37	1	236760194	236760194	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	236760194	236760194	A	G	SNP	HEATR1	ENST00000366582	human	ensembl	74_37	-1	known	missense	c.686	p.V229A	0.390	superfamily_ARM-type_fold	pfam_BP28_C_dom,pfam_U3snoRNP10,superfamily_ARM-type_fold	-	no_errors	HEATR1	HGNC	ENSG00000119285				133	0	0	73	12	14.1176
RYR2	0	genome.wustl.edu	37	1	237777405	237777405	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	237777405	237777405	G	A	SNP	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	silent	c.4971	p.R1657	0.241	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626				54	0	0	45	9	16.6667
RGS7	0	genome.wustl.edu	37	1	240977013	240977013	+	Silent	SNP	C	C	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	240977013	240977013	C	A	SNP	RGS7	ENST00000407727	human	ensembl	74_37	-1	known	silent	c.861	p.T287	0.935	pfam_G-protein_gamma-like_dom,superfamily_G-protein_gamma-like_dom,smart_G-protein_gamma-like_dom	pfam_RGS_dom,pfam_G-protein_gamma-like_dom,pfam_DEP_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_G-protein_gamma-like_dom,smart_DEP_dom,smart_G-protein_gamma-like_dom,smart_Regulat_G_prot_signal_superfam,pfscan_DEP_dom,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS7	HGNC	ENSG00000182901				41	0	0	42	10	19.2308
IL22RA1	0	genome.wustl.edu	37	1	24447502	24447502	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	24447502	24447502	G	A	SNP	IL22RA1	ENST00000270800	human	ensembl	74_37	-1	novel	silent	c.1518	p.G506	0.996	NULL	pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL22RA1	HGNC	ENSG00000142677				53	0	0	47	9	16.0714
ZNF669	0	genome.wustl.edu	37	1	247264200	247264200	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	247264200	247264200	C	T	SNP	ZNF669	ENST00000343381	human	ensembl	74_37	-1	known	missense	c.871	p.G291S	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF669	HGNC	ENSG00000188295				47	0	0	64	4	5.88235
TNFRSF14	0	genome.wustl.edu	37	1	2494319	2494319	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	2494319	2494319	T	C	SNP	TNFRSF14	ENST00000355716	human	ensembl	74_37	+1	known	missense	c.710	p.V237A	0.000	NULL	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_14,prints_Fas_rcpt	-	no_errors	TNFRSF14	HGNC	ENSG00000157873				41	0	0	34	4	10.5263
MAN1C1	0	genome.wustl.edu	37	1	25944365	25944365	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	25944365	25944365	T	C	SNP	MAN1C1	ENST00000374332	human	ensembl	74_37	+1	known	missense	c.77	p.L26P	0.974	NULL	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	MAN1C1	HGNC	ENSG00000117643				25	0	0	7	4	36.3636
STMN1	0	genome.wustl.edu	37	1	26230136	26230136	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	26230136	26230136	C	T	SNP	STMN1	ENST00000426559	human	ensembl	74_37	-1	known	missense	c.182	p.R61H	1.000	pfam_Stathmin_fam,superfamily_Stathmin_fam,pirsf_Stathmin_fam,prints_Stathmin_fam	pfam_Stathmin_fam,superfamily_Stathmin_fam,pirsf_Stathmin_fam,prints_Stathmin_fam	-	no_errors	STMN1	HGNC	ENSG00000117632				155	0	0	189	34	15.2466
PAFAH2	0	genome.wustl.edu	37	1	26303254	26303254	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	26303254	26303254	T	C	SNP	PAFAH2	ENST00000374282	human	ensembl	74_37	-1	known	missense	c.677	p.D226G	1.000	pfam_PAF_acetylhydro,pfam_Peptidase_S9,pirsf_PAF_acetylhydro_eukaryote	pfam_PAF_acetylhydro,pfam_Peptidase_S9,pirsf_PAF_acetylhydro_eukaryote	-	no_errors	PAFAH2	HGNC	ENSG00000158006				50	0	0	37	7	15.9091
GPATCH3	0	genome.wustl.edu	37	1	27224070	27224070	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	27224070	27224070	G	A	SNP	GPATCH3	ENST00000361720	human	ensembl	74_37	-1	known	missense	c.598	p.R200W	0.012	NULL	pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	GPATCH3	HGNC	ENSG00000198746				38	0	0	46	8	14.8148
SLC9A1	0	genome.wustl.edu	37	1	27480472	27480472	+	Splice_Site	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	27480472	27480472	A	G	SNP	SLC9A1	ENST00000263980	human	ensembl	74_37	-1	known	splice_site	c.352+2	e1+2	1.000	-	-	-	no_errors	SLC9A1	HGNC	ENSG00000090020				77	0	0	47	8	14.5455
PPP1R8	0	genome.wustl.edu	37	1	28176658	28176658	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	28176658	28176658	C	T	SNP	PPP1R8	ENST00000311772	human	ensembl	74_37	+1	known	missense	c.757	p.R253C	1.000	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	PPP1R8	HGNC	ENSG00000117751				160	0	0	153	38	19.8953
TSSK3	0	genome.wustl.edu	37	1	32829237	32829237	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	32829237	32829237	C	T	SNP	TSSK3	ENST00000373534	human	ensembl	74_37	+1	known	missense	c.187	p.R63C	0.522	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TSSK3	HGNC	ENSG00000162526				59	0	0	40	12	23.0769
PHC2	0	genome.wustl.edu	37	1	33836036	33836036	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	33836036	33836036	G	A	SNP	PHC2	ENST00000419414	human	ensembl	74_37	-1	known	silent	c.562	p.L188	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM,pfscan_Znf_FCS	-	no_errors	PHC2	HGNC	ENSG00000134686				71	0	0	57	12	17.3913
ZMYM6	0	genome.wustl.edu	37	1	35496158	35496158	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	35496158	35496158	T	C	SNP	ZMYM6	ENST00000357182	human	ensembl	74_37	-1	known	missense	c.83	p.D28G	1.000	NULL	pfam_Znf_MYM,superfamily_RNaseH-like_dom,smart_TRASH_dom	-	no_errors	ZMYM6	HGNC	ENSG00000163867				67	0	0	88	18	16.9811
MAP7D1	0	genome.wustl.edu	37	1	36638990	36638990	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	36638990	36638990	G	A	SNP	MAP7D1	ENST00000373151	human	ensembl	74_37	+1	known	missense	c.650	p.R217Q	1.000	NULL	pfam_MAP7	-	no_errors	MAP7D1	HGNC	ENSG00000116871				91	0	0	81	13	13.8298
STK40	0	genome.wustl.edu	37	1	36807452	36807452	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	36807452	36807452	G	A	SNP	STK40	ENST00000373130	human	ensembl	74_37	-1	known	silent	c.1227	p.F409	0.847	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	STK40	HGNC	ENSG00000196182				34	0	0	21	5	19.2308
MTF1	0	genome.wustl.edu	37	1	38281018	38281018	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	38281018	38281018	G	A	SNP	MTF1	ENST00000373036	human	ensembl	74_37	-1	known	silent	c.2052	p.P684	0.002	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	MTF1	HGNC	ENSG00000188786				79	0	0	74	17	18.6813
MACF1	0	genome.wustl.edu	37	1	39747967	39747967	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	39747967	39747967	T	C	SNP	MACF1	ENST00000317713	human	ensembl	74_37	+1	known	missense	c.631	p.Y211H	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_Spectrin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	MACF1	HGNC	ENSG00000127603				94	0	0	91	5	5.20833
ZNF691	0	genome.wustl.edu	37	1	43317311	43317311	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	43317311	43317311	G	A	SNP	ZNF691	ENST00000397044	human	ensembl	74_37	+1	known	missense	c.775	p.E259K	0.994	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF691	HGNC	ENSG00000164011				58	0	0	54	9	14.2857
DPH2	0	genome.wustl.edu	37	1	44435850	44435850	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	44435850	44435850	G	T	SNP	DPH2	ENST00000255108	human	ensembl	74_37	+1	known	missense	c.3	p.M1I	1.000	NULL	pfam_DPH1/DPH2,tigrfam_DPH1/DPH2,tigrfam_DHP2_eu	-	no_errors	DPH2	HGNC	ENSG00000132768				42	0	0	40	6	13.0435
PLK3	0	genome.wustl.edu	37	1	45267574	45267574	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	45267574	45267574	C	T	SNP	PLK3	ENST00000372201	human	ensembl	74_37	+1	known	missense	c.623	p.A208V	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_POLO_box_duplicated_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_dom	-	no_errors	PLK3	HGNC	ENSG00000173846				48	0	0	46	5	9.80392
HECTD3	0	genome.wustl.edu	37	1	45474833	45474833	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	45474833	45474833	C	T	SNP	HECTD3	ENST00000372172	human	ensembl	74_37	-1	known	missense	c.1055	p.R352H	1.000	pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like	pfam_HECT,pfam_APC_su10/DOC_dom,superfamily_HECT,superfamily_Galactose-bd-like,smart_HECT,pfscan_HECT	-	no_errors	HECTD3	HGNC	ENSG00000126107				46	0	0	48	7	12.7273
CYP4Z2P	0	genome.wustl.edu	37	1	47351211	47351211	+	RNA	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	47351211	47351211	G	A	SNP	CYP4Z2P	ENST00000505841	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.994	-	-	-	no_errors	CYP4Z2P	HGNC	ENSG00000154198				36	0	0	35	4	10.2564
ZCCHC11	0	genome.wustl.edu	37	1	52891135	52891135	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	52891135	52891135	C	T	SNP	ZCCHC11	ENST00000257177	human	ensembl	74_37	-1	known	missense	c.4756	p.A1586T	1.000	NULL	pfam_PAP_assoc,pfam_Znf_CCHC,pfam_Nucleotidyltransferase,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC11	HGNC	ENSG00000134744				46	0	0	50	11	18.0328
C1orf177	0	genome.wustl.edu	37	1	55282678	55282678	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	55282678	55282678	G	A	SNP	C1orf177	ENST00000371273	human	ensembl	74_37	+1	known	missense	c.1067	p.G356D	1.000	NULL	NULL	-	no_errors	C1orf177	HGNC	ENSG00000162398				46	0	0	41	7	14.5833
NPHP4	0	genome.wustl.edu	37	1	5940242	5940242	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	5940242	5940242	C	T	SNP	NPHP4	ENST00000378156	human	ensembl	74_37	-1	known	missense	c.2543	p.R848Q	0.834	NULL	NULL	-	no_errors	NPHP4	HGNC	ENSG00000131697				31	0	0	29	6	17.1429
CYP2J2	0	genome.wustl.edu	37	1	60381679	60381679	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	60381679	60381679	T	C	SNP	CYP2J2	ENST00000371204	human	ensembl	74_37	-1	known	missense	c.304	p.I102V	0.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2J-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B,prints_Cyt_P450_E_grp-I_CYP2D-like	-	no_errors	CYP2J2	HGNC	ENSG00000134716				77	0	0	76	13	14.6067
ZBTB48	0	genome.wustl.edu	37	1	6649095	6649095	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	6649095	6649095	G	A	SNP	ZBTB48	ENST00000377674	human	ensembl	74_37	+1	known	silent	c.1890	p.P630	0.144	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB48	HGNC	ENSG00000204859				71	0	0	58	10	14.7059
KLHL21	0	genome.wustl.edu	37	1	6659418	6659418	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	6659418	6659418	G	A	SNP	KLHL21	ENST00000377658	human	ensembl	74_37	-1	known	silent	c.1116	p.R372	0.025	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL21	HGNC	ENSG00000162413				33	0	0	23	5	17.8571
LRRC7	0	genome.wustl.edu	37	1	70504797	70504797	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	70504797	70504797	T	C	SNP	LRRC7	ENST00000035383	human	ensembl	74_37	+1	known	missense	c.3176	p.V1059A	0.005	NULL	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	LRRC7	HGNC	ENSG00000033122				58	0	0	51	9	15
C1orf173	0	genome.wustl.edu	37	1	75097397	75097397	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	75097397	75097397	C	T	SNP	C1orf173	ENST00000326665	human	ensembl	74_37	-1	known	silent	c.819	p.K273	0.995	NULL	NULL	-	no_errors	C1orf173	HGNC	ENSG00000178965				50	0	0	58	5	7.93651
DNAJB4	0	genome.wustl.edu	37	1	78478866	78478866	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	78478866	78478866	C	T	SNP	DNAJB4	ENST00000370763	human	ensembl	74_37	+1	known	nonsense	c.343	p.R115*	1.000	NULL	pfam_DnaJ_C,pfam_DnaJ_domain,superfamily_DnaJ_domain,superfamily_HSP40/DnaJ_pept-bd,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJB4	HGNC	ENSG00000162616				127	0	0	123	21	14.5833
ABCA4	0	genome.wustl.edu	37	1	94578618	94578618	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	94578618	94578618	C	T	SNP	ABCA4	ENST00000370225	human	ensembl	74_37	-1	known	missense	c.71	p.R24H	1.000	tigrfam_Rim_ABC_transpt	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Rim_ABC_transpt	-	no_errors	ABCA4	HGNC	ENSG00000198691				122	0	0	141	14	9.03226
LPPR4	0	genome.wustl.edu	37	1	99771300	99771300	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	99771300	99771300	C	T	SNP	LPPR4	ENST00000370185	human	ensembl	74_37	+1	known	silent	c.1026	p.D342	0.290	NULL	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	LPPR4	Uniprot_gn	ENSG00000117600				150	1	0.662252	137	24	14.9068
LOXL4	0	genome.wustl.edu	37	10	100017916	100017916	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	100017916	100017916	C	T	SNP	LOXL4	ENST00000260702	human	ensembl	74_37	-1	known	silent	c.927	p.P309	0.000	superfamily_Srcr_rcpt-rel	pfam_Lysyl_oxidase,pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_Lysyl_oxidase,prints_SRCR	-	no_errors	LOXL4	HGNC	ENSG00000138131				26	0	0	16	5	23.8095
PYROXD2	0	genome.wustl.edu	37	10	100147059	100147059	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	100147059	100147059	C	T	SNP	PYROXD2	ENST00000370575	human	ensembl	74_37	-1	known	missense	c.1453	p.D485N	1.000	NULL	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Amino_oxidase	-	no_errors	PYROXD2	HGNC	ENSG00000119943				38	0	0	37	9	19.5652
MIR608	0	genome.wustl.edu	37	10	102734779	102734779	+	RNA	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	102734779	102734779	C	T	SNP	MIR608	ENST00000384820	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.013	-	-	-	no_errors	MIR608	HGNC	ENSG00000207551				17	0	0	30	8	21.0526
MGEA5	0	genome.wustl.edu	37	10	103558747	103558747	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	103558747	103558747	G	A	SNP	MGEA5	ENST00000361464	human	ensembl	74_37	-1	known	missense	c.1661	p.T554I	1.000	NULL	pfam_Beta-N-acetylglucosaminidase,superfamily_Glycoside_hydrolase_SF,superfamily_Acyl_CoA_acyltransferase	-	no_errors	MGEA5	HGNC	ENSG00000198408				129	0	0	120	25	17.2414
NOLC1	0	genome.wustl.edu	37	10	103921390	103921390	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	103921390	103921390	A	G	SNP	NOLC1	ENST00000405356	human	ensembl	74_37	+1	known	missense	c.1849	p.T617A	1.000	NULL	pfam_SRP40_C,pfscan_LisH_dimerisation	-	no_errors	NOLC1	HGNC	ENSG00000166197				39	0	0	33	9	21.4286
GBF1	0	genome.wustl.edu	37	10	104120057	104120057	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	104120057	104120057	C	T	SNP	GBF1	ENST00000369983	human	ensembl	74_37	+1	known	missense	c.1294	p.H432Y	1.000	superfamily_ARM-type_fold	pfam_Sec7_dom,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	-	no_errors	GBF1	HGNC	ENSG00000107862				261	0	0	209	33	13.6364
NFKB2	0	genome.wustl.edu	37	10	104156720	104156720	+	Silent	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	104156720	104156720	A	G	SNP	NFKB2	ENST00000369966	human	ensembl	74_37	+1	known	silent	c.303	p.P101	0.045	pfam_RHD,superfamily_p53-like_TF_DNA-bd,pfscan_RHD	pfam_RHD,pfam_Ankyrin_rpt,pfam_Death_domain,superfamily_p53-like_TF_DNA-bd,superfamily_Ankyrin_rpt-contain_dom,superfamily_Ig_E-set,superfamily_DEATH-like_dom,smart_IPT,smart_Ankyrin_rpt,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_RHD,prints_NF_Rel_Dor,prints_Ankyrin_rpt	-	no_errors	NFKB2	HGNC	ENSG00000077150				19	0	0	30	5	14.2857
TMEM180	0	genome.wustl.edu	37	10	104230500	104230500	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	104230500	104230500	G	A	SNP	TMEM180	ENST00000238936	human	ensembl	74_37	+1	known	silent	c.330	p.A110	0.143	superfamily_MFS_dom_general_subst_transpt	superfamily_MFS_dom_general_subst_transpt	-	no_errors	TMEM180	HGNC	ENSG00000138111				70	0	0	41	5	10.8696
OBFC1	0	genome.wustl.edu	37	10	105659861	105659861	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	105659861	105659861	C	T	SNP	OBFC1	ENST00000224950	human	ensembl	74_37	-1	known	missense	c.416	p.R139H	0.101	pfam_NA-bd_OB_tRNA,superfamily_NA-bd_OB-fold,pirsf_CST_STN1	pfam_CST_STN1_C,pfam_NA-bd_OB_tRNA,superfamily_NA-bd_OB-fold,pirsf_CST_STN1	-	no_errors	OBFC1	HGNC	ENSG00000107960				85	0	0	105	11	9.48276
ZDHHC6	0	genome.wustl.edu	37	10	114194118	114194118	+	Silent	SNP	C	C	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	114194118	114194118	C	A	SNP	ZDHHC6	ENST00000369405	human	ensembl	74_37	-1	known	silent	c.840	p.G280	0.045	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfam_SH3_2,superfamily_SH3_domain,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC6	HGNC	ENSG00000023041				59	0	0	58	6	9.375
HABP2	0	genome.wustl.edu	37	10	115338385	115338385	+	Splice_Site	SNP	G	G	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	115338385	115338385	G	T	SNP	HABP2	ENST00000351270	human	ensembl	74_37	+1	known	splice_site	c.569-1	e7-1	1.000	-	-	-	no_errors	HABP2	HGNC	ENSG00000148702				74	0	0	86	9	9.47368
NRAP	0	genome.wustl.edu	37	10	115402723	115402723	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	115402723	115402723	G	A	SNP	NRAP	ENST00000369358	human	ensembl	74_37	-1	known	silent	c.1185	p.N395	0.989	smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_Znf_LIM,smart_Znf_LIM,smart_Nebulin_35r-motif,pfscan_Znf_LIM,pfscan_Nebulin_35r-motif,prints_Nebulin	-	no_errors	NRAP	HGNC	ENSG00000197893				85	0	0	82	16	16.3265
UPF2	0	genome.wustl.edu	37	10	12006024	12006024	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	12006024	12006024	C	T	SNP	UPF2	ENST00000356352	human	ensembl	74_37	-1	known	missense	c.2168	p.R723K	1.000	pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	pfam_MIF4G-like_typ-3,pfam_Up-fram_suppressor-2,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	-	no_errors	UPF2	HGNC	ENSG00000151461				208	0	0	221	43	16.2879
UPF2	0	genome.wustl.edu	37	10	12071324	12071324	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	12071324	12071324	A	C	SNP	UPF2	ENST00000356352	human	ensembl	74_37	-1	known	missense	c.565	p.L189V	1.000	pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	pfam_MIF4G-like_typ-3,pfam_Up-fram_suppressor-2,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	-	no_errors	UPF2	HGNC	ENSG00000151461				94	0	0	96	9	8.57143
DMBT1	0	genome.wustl.edu	37	10	124345846	124345846	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	124345846	124345846	G	A	SNP	DMBT1	ENST00000338354	human	ensembl	74_37	+1	known	missense	c.1730	p.G577D	0.003	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_SRCR,pfam_CUB_dom,pfam_ZP_dom,superfamily_Srcr_rcpt-rel,superfamily_CUB_dom,smart_Srcr_rcpt-rel,smart_CUB_dom,smart_ZP_dom,pfscan_CUB_dom,pfscan_SRCR,pfscan_ZP_dom,prints_SRCR	-	no_errors	DMBT1	HGNC	ENSG00000187908				137	0	0	101	22	17.8862
DMBT1	0	genome.wustl.edu	37	10	124348500	124348500	+	Silent	SNP	T	T	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	124348500	124348500	T	A	SNP	DMBT1	ENST00000338354	human	ensembl	74_37	+1	known	silent	c.1824	p.G608	0.000	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_SRCR,pfam_CUB_dom,pfam_ZP_dom,superfamily_Srcr_rcpt-rel,superfamily_CUB_dom,smart_Srcr_rcpt-rel,smart_CUB_dom,smart_ZP_dom,pfscan_CUB_dom,pfscan_SRCR,pfscan_ZP_dom,prints_SRCR	-	no_errors	DMBT1	HGNC	ENSG00000187908				270	0	0	186	34	15.4545
GPR26	0	genome.wustl.edu	37	10	125447476	125447476	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	125447476	125447476	G	A	SNP	GPR26	ENST00000284674	human	ensembl	74_37	+1	known	missense	c.814	p.G272S	0.994	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR26	HGNC	ENSG00000154478				50	0	0	37	4	9.7561
C10orf90	0	genome.wustl.edu	37	10	128193584	128193584	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	128193584	128193584	T	G	SNP	C10orf90	ENST00000544758	human	ensembl	74_37	-1	known	missense	c.476	p.K159T	0.001	NULL	NULL	-	no_errors	C10orf90	HGNC	ENSG00000154493				85	0	0	79	11	12.2222
DPYSL4	0	genome.wustl.edu	37	10	134006199	134006199	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	134006199	134006199	A	G	SNP	DPYSL4	ENST00000338492	human	ensembl	74_37	+1	known	missense	c.166	p.K56E	0.937	superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	DPYSL4	HGNC	ENSG00000151640				60	0	0	49	5	9.25926
KNDC1	0	genome.wustl.edu	37	10	135013091	135013091	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	135013091	135013091	C	T	SNP	KNDC1	ENST00000368572	human	ensembl	74_37	+1	known	missense	c.2894	p.A965V	0.019	NULL	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,superfamily_Kinase-like_dom,smart_KIND,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	KNDC1	HGNC	ENSG00000171798				65	0	0	58	14	19.4444
CUBN	0	genome.wustl.edu	37	10	16942758	16942758	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	16942758	16942758	A	G	SNP	CUBN	ENST00000377833	human	ensembl	74_37	-1	known	missense	c.8276	p.I2759T	0.195	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611				54	0	0	47	4	7.84314
YME1L1	0	genome.wustl.edu	37	10	27403477	27403477	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	27403477	27403477	G	A	SNP	YME1L1	ENST00000326799	human	ensembl	74_37	-1	known	silent	c.2151	p.I717	1.000	pfam_Peptidase_M41,tigrfam_FtsH	pfam_Peptidase_M41,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_FtsH	-	no_errors	YME1L1	HGNC	ENSG00000136758				57	0	0	67	7	9.45946
MPP7	0	genome.wustl.edu	37	10	28420597	28420597	+	Silent	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	28420597	28420597	A	G	SNP	MPP7	ENST00000337532	human	ensembl	74_37	-1	known	silent	c.339	p.T113	0.998	pfam_L27_C,superfamily_PDZ,smart_L27,pfscan_L27	pfam_GK/Ca_channel_bsu,pfam_L27_C,pfam_PDZ,pfam_SH3_2,pfam_SH3_domain,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like,prints_SH3_domain	-	no_errors	MPP7	HGNC	ENSG00000150054				60	0	0	62	11	15.0685
ZEB1	0	genome.wustl.edu	37	10	31791321	31791321	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	31791321	31791321	A	G	SNP	ZEB1	ENST00000361642	human	ensembl	74_37	+1	known	missense	c.368	p.H123R	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZEB1	HGNC	ENSG00000148516				67	0	0	77	8	9.41176
CCDC7	0	genome.wustl.edu	37	10	32740668	32740668	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	32740668	32740668	C	A	SNP	CCDC7	ENST00000277657	human	ensembl	74_37	+1	known	missense	c.98	p.P33H	0.263	NULL	NULL	-	no_errors	CCDC7	HGNC	ENSG00000216937				71	0	0	57	10	14.9254
ITGB1	0	genome.wustl.edu	37	10	33209310	33209310	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	33209310	33209310	G	T	SNP	ITGB1	ENST00000374956	human	ensembl	74_37	-1	known	missense	c.1132	p.L378I	1.000	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,smart_Integrin_bsu_N	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_tail,pfam_Integrin_bsu_cyt_dom,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB1	HGNC	ENSG00000150093				61	0	0	80	8	9.09091
NRP1	0	genome.wustl.edu	37	10	33469287	33469287	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	33469287	33469287	G	A	SNP	NRP1	ENST00000265371	human	ensembl	74_37	-1	known	missense	c.2489	p.T830M	0.999	pirsf_Neuropilin	pirsf_Neuropilin,pfam_CUB_dom,pfam_Coagulation_fac_5/8-C_type_dom,pfam_MAM_dom,pfam_Neuropilin1_C,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_CUB_dom,smart_CUB_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_MAM_dom,prints_MAM_dom,pfscan_CUB_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_MAM_dom	-	no_errors	NRP1	HGNC	ENSG00000099250				97	0	0	96	15	13.5135
BMS1	0	genome.wustl.edu	37	10	43297650	43297650	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	43297650	43297650	G	T	SNP	BMS1	ENST00000374518	human	ensembl	74_37	+1	known	missense	c.2313	p.K771N	0.995	superfamily_P-loop_NTPase	pfam_BMS1_TSR1_C,pfam_AARP2CN,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_AARP2CN	-	no_errors	BMS1	HGNC	ENSG00000165733				71	0	0	69	10	12.6582
CSGALNACT2	0	genome.wustl.edu	37	10	43656003	43656003	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	43656003	43656003	G	T	SNP	CSGALNACT2	ENST00000374466	human	ensembl	74_37	+1	known	nonsense	c.940	p.G314*	1.000	pfam_Chond_GalNAc	pfam_Chond_GalNAc	-	no_errors	CSGALNACT2	HGNC	ENSG00000169826				54	0	0	51	9	15
ALOX5	0	genome.wustl.edu	37	10	45877991	45877991	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	45877991	45877991	G	A	SNP	ALOX5	ENST00000374391	human	ensembl	74_37	+1	known	missense	c.211	p.E71K	1.000	pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,prints_LipOase_mml,pfscan_PLAT/LH2_dom	pfam_LipOase_C,pfam_PLAT/LH2_dom,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,prints_LipOase_mml,prints_LipOase_C,pfscan_PLAT/LH2_dom	-	no_errors	ALOX5	HGNC	ENSG00000012779				81	0	0	71	8	10.1266
RBP3	0	genome.wustl.edu	37	10	48390672	48390672	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	48390672	48390672	G	A	SNP	RBP3	ENST00000224600	human	ensembl	74_37	-1	known	missense	c.206	p.T69M	0.366	NULL	pfam_Interphotoreceptor_retinol-bd,pfam_Interphotorcpt_retinol-bd_N,smart_Interphotoreceptor_retinol-bd	-	no_errors	RBP3	HGNC	ENSG00000107618				50	0	0	33	6	15.3846
SLC18A3	0	genome.wustl.edu	37	10	50819501	50819501	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	50819501	50819501	G	A	SNP	SLC18A3	ENST00000374115	human	ensembl	74_37	+1	known	missense	c.715	p.A239T	1.000	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC18A3	HGNC	ENSG00000187714				15	0	0	8	3	27.2727
FAM13C	0	genome.wustl.edu	37	10	61043190	61043190	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	61043190	61043190	C	T	SNP	FAM13C	ENST00000373868	human	ensembl	74_37	-1	known	silent	c.525	p.V175	1.000	NULL	NULL	-	no_errors	FAM13C	HGNC	ENSG00000148541				103	0	0	125	22	14.966
HNRNPH3	0	genome.wustl.edu	37	10	70097668	70097668	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	70097668	70097668	A	C	SNP	HNRNPH3	ENST00000265866	human	ensembl	74_37	+1	known	missense	c.166	p.S56R	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPH3	HGNC	ENSG00000096746				145	0	0	120	18	13.0435
TBATA	0	genome.wustl.edu	37	10	72539499	72539499	+	Splice_Site	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	72539499	72539499	C	T	SNP	TBATA	ENST00000299290	human	ensembl	74_37	-1	known	splice_site	c.278-1	e3-1	0.999	-	-	-	no_errors	TBATA	HGNC	ENSG00000166220				48	0	0	48	12	20
SLC29A3	0	genome.wustl.edu	37	10	73121832	73121832	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	73121832	73121832	C	T	SNP	SLC29A3	ENST00000373189	human	ensembl	74_37	+1	known	missense	c.895	p.R299C	0.000	pfam_Eqnu_transpt	pfam_Eqnu_transpt,prints_Eqnu_transpt	-	no_errors	SLC29A3	HGNC	ENSG00000198246				100	0	0	101	14	12.1739
FUT11	0	genome.wustl.edu	37	10	75533570	75533570	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	75533570	75533570	A	G	SNP	FUT11	ENST00000372841	human	ensembl	74_37	+1	known	missense	c.1331	p.D444G	1.000	pirsf_Alpha-1_3-FUT_met	pfam_Glyco_trans_10,pirsf_Alpha-1_3-FUT_met	-	no_errors	FUT11	HGNC	ENSG00000196968				79	0	0	90	13	12.6214
VCL	0	genome.wustl.edu	37	10	75855453	75855453	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	75855453	75855453	G	A	SNP	VCL	ENST00000211998	human	ensembl	74_37	+1	known	missense	c.1583	p.R528H	1.000	pfam_Vinculin/catenin,superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Vinculin	-	no_errors	VCL	HGNC	ENSG00000035403				73	0	0	67	4	5.6338
ITIH5	0	genome.wustl.edu	37	10	7618607	7618607	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	7618607	7618607	G	A	SNP	ITIH5	ENST00000256861	human	ensembl	74_37	-1	known	missense	c.1787	p.P596L	0.000	NULL	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH5	HGNC	ENSG00000123243				32	0	0	25	4	13.7931
ITIH5	0	genome.wustl.edu	37	10	7621950	7621950	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	7621950	7621950	G	A	SNP	ITIH5	ENST00000256861	human	ensembl	74_37	-1	known	missense	c.1186	p.R396W	0.992	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH5	HGNC	ENSG00000123243				20	0	0	24	5	17.2414
PPIF	0	genome.wustl.edu	37	10	81113585	81113585	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	81113585	81113585	G	A	SNP	PPIF	ENST00000225174	human	ensembl	74_37	+1	known	missense	c.611	p.G204D	1.000	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPIF	HGNC	ENSG00000108179				40	0	0	44	11	20
SFTPA2	0	genome.wustl.edu	37	10	81317088	81317088	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	81317088	81317088	G	A	SNP	SFTPA2	ENST00000372325	human	ensembl	74_37	-1	known	silent	c.624	p.Y208	0.996	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_Collagen,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	SFTPA2	HGNC	ENSG00000185303				274	0	0	219	36	14.1176
KIF20B	0	genome.wustl.edu	37	10	91483733	91483733	+	Silent	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	91483733	91483733	T	C	SNP	KIF20B	ENST00000416354	human	ensembl	74_37	+1	known	silent	c.1735	p.L579	0.333	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF20B	HGNC	ENSG00000138182				43	0	0	51	17	25
EXOC6	0	genome.wustl.edu	37	10	94712135	94712135	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	94712135	94712135	C	T	SNP	EXOC6	ENST00000371547	human	ensembl	74_37	+1	known	missense	c.1570	p.R524W	1.000	pfam_Sec15,pirsf_Sec15	pfam_Sec15,pirsf_Sec15	-	no_errors	EXOC6	HGNC	ENSG00000138190				59	0	0	55	10	15.3846
MYOF	0	genome.wustl.edu	37	10	95083098	95083098	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	95083098	95083098	C	A	SNP	MYOF	ENST00000359263	human	ensembl	74_37	-1	known	missense	c.5289	p.W1763C	1.000	superfamily_C2_dom	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_dom,smart_C2_dom,smart_Peroxin/Ferlin,pfscan_C2_dom	-	no_errors	MYOF	HGNC	ENSG00000138119				56	0	0	66	11	14.2857
ENTPD1	0	genome.wustl.edu	37	10	97624518	97624518	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	97624518	97624518	T	C	SNP	ENTPD1	ENST00000371207	human	ensembl	74_37	+1	known	missense	c.1262	p.L421P	1.000	pfam_GDA1_CD39_NTPase	pfam_GDA1_CD39_NTPase	-	no_errors	ENTPD1	HGNC	ENSG00000138185				65	0	0	87	16	15.534
RRP12	0	genome.wustl.edu	37	10	99139083	99139083	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	99139083	99139083	A	C	SNP	RRP12	ENST00000370992	human	ensembl	74_37	-1	known	missense	c.1765	p.F589V	1.000	pfam_Uncharacterised_NUC173,superfamily_ARM-type_fold	pfam_Uncharacterised_NUC173,superfamily_ARM-type_fold	-	no_errors	RRP12	HGNC	ENSG00000052749				228	0	0	206	25	10.8225
AVPI1	0	genome.wustl.edu	37	10	99439420	99439420	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	99439420	99439420	C	T	SNP	AVPI1	ENST00000370626	human	ensembl	74_37	-1	known	silent	c.243	p.R81	0.933	NULL	NULL	-	no_errors	AVPI1	HGNC	ENSG00000119986				21	0	0	15	5	25
GUCY1A2	0	genome.wustl.edu	37	11	106810870	106810870	+	Silent	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	106810870	106810870	A	G	SNP	GUCY1A2	ENST00000282249	human	ensembl	74_37	-1	known	silent	c.522	p.G174	0.362	pfam_Heme_NO-bd,superfamily_NO_sig/Golgi_transp_ligand-bd	pfam_Haem_no_assoc-bd,pfam_A/G_cyclase,pfam_Heme_NO-bd,superfamily_A/G_cyclase,superfamily_NO_sig/Golgi_transp_ligand-bd,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	GUCY1A2	HGNC	ENSG00000152402				67	0	0	77	13	14.4444
ZC3H12C	0	genome.wustl.edu	37	11	110030105	110030105	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	110030105	110030105	G	A	SNP	ZC3H12C	ENST00000278590	human	ensembl	74_37	+1	known	silent	c.1038	p.S346	0.004	pfam_RNase_Zc3h12	pfam_RNase_Zc3h12	-	no_errors	ZC3H12C	HGNC	ENSG00000149289				32	0	0	49	6	10.9091
ZBTB16	0	genome.wustl.edu	37	11	113934373	113934373	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	113934373	113934373	G	A	SNP	ZBTB16	ENST00000335953	human	ensembl	74_37	+1	known	silent	c.351	p.Q117	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB16	HGNC	ENSG00000109906				27	0	0	27	3	10
ZBTB16	0	genome.wustl.edu	37	11	114121133	114121133	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	114121133	114121133	C	T	SNP	ZBTB16	ENST00000335953	human	ensembl	74_37	+1	known	silent	c.1878	p.G626	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB16	HGNC	ENSG00000109906				59	0	0	75	7	8.53659
CADM1	0	genome.wustl.edu	37	11	115111047	115111047	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	115111047	115111047	A	G	SNP	CADM1	ENST00000452722	human	ensembl	74_37	-1	known	missense	c.218	p.V73A	1.000	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like_dom	-	no_errors	CADM1	HGNC	ENSG00000182985				74	0	0	51	9	15
CEP164	0	genome.wustl.edu	37	11	117222588	117222588	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	117222588	117222588	C	T	SNP	CEP164	ENST00000278935	human	ensembl	74_37	+1	known	missense	c.277	p.R93W	1.000	NULL	superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	CEP164	HGNC	ENSG00000110274				80	0	0	74	10	11.9048
CEP164	0	genome.wustl.edu	37	11	117253641	117253641	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	117253641	117253641	G	A	SNP	CEP164	ENST00000278935	human	ensembl	74_37	+1	known	silent	c.1707	p.P569	0.254	NULL	superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	CEP164	HGNC	ENSG00000110274				28	0	0	17	5	22.7273
PVRL1	0	genome.wustl.edu	37	11	119547871	119547871	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	119547871	119547871	G	A	SNP	PVRL1	ENST00000264025	human	ensembl	74_37	-1	known	silent	c.792	p.D264	0.146	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_CD80_C2-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	PVRL1	HGNC	ENSG00000110400				54	0	0	47	10	17.5439
MUC5AC	0	genome.wustl.edu	37	11	1215795	1215795	+	RNA	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	1215795	1215795	C	T	SNP	MUC5AC	ENST00000358378	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.037	-	-	-	no_errors	MUC5AC	HGNC	ENSG00000215182				25	0	0	21	5	19.2308
GRAMD1B	0	genome.wustl.edu	37	11	123464792	123464792	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	123464792	123464792	G	A	SNP	GRAMD1B	ENST00000322282	human	ensembl	74_37	+1	known	silent	c.258	p.V86	0.859	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD1B	HGNC	ENSG00000023171				59	0	0	57	11	16.1765
OR6M1	0	genome.wustl.edu	37	11	123676673	123676673	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	123676673	123676673	G	A	SNP	OR6M1	ENST00000309154	human	ensembl	74_37	-1	known	missense	c.385	p.H129Y	0.992	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6M1	HGNC	ENSG00000196099				47	0	0	37	5	11.9048
ST3GAL4	0	genome.wustl.edu	37	11	126278260	126278260	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	126278260	126278260	C	T	SNP	ST3GAL4	ENST00000356132	human	ensembl	74_37	+1	known	missense	c.514	p.R172C	1.000	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST3GAL4	HGNC	ENSG00000110080				65	0	0	72	10	12.1951
KCNJ5	0	genome.wustl.edu	37	11	128781942	128781942	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	128781942	128781942	C	T	SNP	KCNJ5	ENST00000529694	human	ensembl	74_37	+1	known	silent	c.774	p.N258	0.999	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir3.4	-	no_errors	KCNJ5	HGNC	ENSG00000120457				94	0	0	66	16	19.5122
KCNJ11	0	genome.wustl.edu	37	11	17408965	17408965	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	17408965	17408965	C	T	SNP	KCNJ11	ENST00000339994	human	ensembl	74_37	-1	known	missense	c.674	p.S225N	1.000	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir6.2	-	no_errors	KCNJ11	HGNC	ENSG00000187486				58	0	0	36	5	12.1951
TCP11L1	0	genome.wustl.edu	37	11	33079684	33079684	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	33079684	33079684	A	G	SNP	TCP11L1	ENST00000527661	human	ensembl	74_37	+1	known	missense	c.637	p.R213G	1.000	pfam_Tcp11	pfam_Tcp11	-	no_errors	TCP11L1	HGNC	ENSG00000176148				42	0	0	39	10	20.4082
LMO2	0	genome.wustl.edu	37	11	33881074	33881074	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	33881074	33881074	C	T	SNP	LMO2	ENST00000257818	human	ensembl	74_37	-1	known	missense	c.512	p.R171H	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LMO2	HGNC	ENSG00000135363				64	0	0	57	8	12.3077
RAG1	0	genome.wustl.edu	37	11	36595310	36595310	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	36595310	36595310	G	A	SNP	RAG1	ENST00000299440	human	ensembl	74_37	+1	known	silent	c.456	p.P152	0.894	NULL	pfam_Znf_VDJ_recomb-activ_1,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RAG1	HGNC	ENSG00000166349				66	0	0	63	11	14.8649
ALKBH3	0	genome.wustl.edu	37	11	43923097	43923097	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	43923097	43923097	G	A	SNP	ALKBH3	ENST00000302708	human	ensembl	74_37	+1	known	missense	c.491	p.R164H	1.000	NULL	pfam_Oxoglu/Fe-dep_dioxygenase	-	no_errors	ALKBH3	HGNC	ENSG00000166199				92	0	0	81	21	20.5882
ACCSL	0	genome.wustl.edu	37	11	44069844	44069844	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	44069844	44069844	C	T	SNP	ACCSL	ENST00000378832	human	ensembl	74_37	+1	known	silent	c.258	p.A86	0.001	NULL	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	-	no_errors	ACCSL	HGNC	ENSG00000205126				102	1	0.970874	85	15	15
DDB2	0	genome.wustl.edu	37	11	47238526	47238526	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	47238526	47238526	G	A	SNP	DDB2	ENST00000256996	human	ensembl	74_37	+1	known	missense	c.382	p.A128T	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DDB2	HGNC	ENSG00000134574				55	0	0	59	16	21.3333
MYBPC3	0	genome.wustl.edu	37	11	47363661	47363661	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	47363661	47363661	G	A	SNP	MYBPC3	ENST00000399249	human	ensembl	74_37	-1	known	silent	c.1671	p.G557	0.111	pfam_Ig_I-set,smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYBPC3	HGNC	ENSG00000134571				44	0	0	41	5	10.8696
SPI1	0	genome.wustl.edu	37	11	47377075	47377075	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	47377075	47377075	C	A	SNP	SPI1	ENST00000533030	human	ensembl	74_37	-1	putative	missense	c.68	p.C23F	1.000	NULL	NULL	-	no_errors	SPI1	HGNC	ENSG00000066336				30	0	0	25	9	26.4706
PSMC3	0	genome.wustl.edu	37	11	47446697	47446697	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	47446697	47446697	G	A	SNP	PSMC3	ENST00000298852	human	ensembl	74_37	-1	known	missense	c.260	p.P87L	1.000	tigrfam_26S_Psome_P45	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	-	no_errors	PSMC3	HGNC	ENSG00000165916				103	0	0	111	11	9.01639
OR4S1	0	genome.wustl.edu	37	11	48328289	48328289	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	48328289	48328289	T	C	SNP	OR4S1	ENST00000319988	human	ensembl	74_37	+1	known	missense	c.515	p.I172T	0.989	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4S1	HGNC	ENSG00000176555				67	0	0	81	13	13.8298
OR4C12	0	genome.wustl.edu	37	11	50003875	50003875	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	50003875	50003875	A	G	SNP	OR4C12	ENST00000335238	human	ensembl	74_37	-1	known	missense	c.163	p.S55P	0.596	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR4C12	HGNC	ENSG00000221954				59	0	0	69	12	14.8148
OR4C46	0	genome.wustl.edu	37	11	51515486	51515486	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	51515486	51515486	G	T	SNP	OR4C46	ENST00000328188	human	ensembl	74_37	+1	known	missense	c.205	p.A69S	0.324	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4C46	HGNC	ENSG00000185926				177	0	0	170	22	11.4583
OR51B5	0	genome.wustl.edu	37	11	5364322	5364322	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	5364322	5364322	C	A	SNP	OR51B5	ENST00000300773	human	ensembl	74_37	-1	known	nonsense	c.433	p.G145*	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51B5	HGNC	ENSG00000242180				81	0	0	101	15	12.931
TRIM5	0	genome.wustl.edu	37	11	5701080	5701080	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	5701080	5701080	C	T	SNP	TRIM5	ENST00000305836	human	ensembl	74_37	-1	known	missense	c.328	p.G110R	0.001	pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM5	HGNC	ENSG00000132256				106	0	0	84	19	18.4466
OR9Q2	0	genome.wustl.edu	37	11	57958150	57958150	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	57958150	57958150	T	G	SNP	OR9Q2	ENST00000311591	human	ensembl	74_37	+1	known	missense	c.188	p.L63R	0.997	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR9Q2	HGNC	ENSG00000186513				50	0	0	28	4	12.5
OR10W1	0	genome.wustl.edu	37	11	58034831	58034831	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	58034831	58034831	T	C	SNP	OR10W1	ENST00000395079	human	ensembl	74_37	-1	known	missense	c.500	p.H167R	0.978	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10W1	HGNC	ENSG00000172772				40	0	0	36	6	14.2857
GLYATL1	0	genome.wustl.edu	37	11	58722275	58722275	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	58722275	58722275	C	T	SNP	GLYATL1	ENST00000300079	human	ensembl	74_37	+1	known	silent	c.312	p.N104	0.000	pfam_Glycine_N-acyltransferase_N,superfamily_Acyl_CoA_acyltransferase	pfam_Glycine_N-acyltransferase_N,pfam_Glycine_N-acyltransferase_C,superfamily_Acyl_CoA_acyltransferase	-	no_errors	GLYATL1	HGNC	ENSG00000166840				85	0	0	84	13	13.4021
FAM111A	0	genome.wustl.edu	37	11	58920216	58920216	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	58920216	58920216	T	C	SNP	FAM111A	ENST00000361723	human	ensembl	74_37	+1	known	missense	c.1075	p.Y359H	0.002	superfamily_Trypsin-like_Pept_dom	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom	-	no_errors	FAM111A	HGNC	ENSG00000166801				107	0	0	117	26	18.1818
OR4D9	0	genome.wustl.edu	37	11	59282557	59282557	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	59282557	59282557	C	T	SNP	OR4D9	ENST00000329328	human	ensembl	74_37	+1	known	missense	c.172	p.P58S	0.998	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4D9	HGNC	ENSG00000172742				181	0	0	188	21	10.0478
MS4A4A	0	genome.wustl.edu	37	11	60059718	60059718	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	60059718	60059718	C	T	SNP	MS4A4A	ENST00000337908	human	ensembl	74_37	+1	known	missense	c.62	p.T21I	0.002	NULL	pfam_CD20-like	-	no_errors	MS4A4A	HGNC	ENSG00000110079				71	0	0	59	12	16.9014
RPLP0P2	0	genome.wustl.edu	37	11	61404393	61404393	+	RNA	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	61404393	61404393	G	A	SNP	RPLP0P2	ENST00000496593	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RPLP0P2	HGNC	ENSG00000243742				30	0	0	35	7	16.6667
RPLP0P2	0	genome.wustl.edu	37	11	61404624	61404624	+	RNA	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	61404624	61404624	C	T	SNP	RPLP0P2	ENST00000496593	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RPLP0P2	HGNC	ENSG00000243742				34	0	0	30	8	21.0526
AHNAK	0	genome.wustl.edu	37	11	62297304	62297304	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	62297304	62297304	C	A	SNP	AHNAK	ENST00000378024	human	ensembl	74_37	-1	known	nonsense	c.4585	p.E1529*	0.970	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942				237	0	0	227	41	15.2985
EEF1G	0	genome.wustl.edu	37	11	62338457	62338457	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	62338457	62338457	G	T	SNP	EEF1G	ENST00000378019	human	ensembl	74_37	-1	known	missense	c.652	p.L218M	0.999	pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like	pfam_Transl_elong_EF1_G_con,pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Transl_elong_EF1_G_con,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,pfscan_Transl_elong_EF1_G_con	-	no_errors	EEF1G	HGNC	ENSG00000254772				167	1	0.595238	143	25	14.881
SLC22A6	0	genome.wustl.edu	37	11	62744336	62744336	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	62744336	62744336	C	T	SNP	SLC22A6	ENST00000377871	human	ensembl	74_37	-1	known	missense	c.1622	p.R541Q	0.000	NULL	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A6	HGNC	ENSG00000197901				23	0	0	34	12	26.087
PRKCDBP	0	genome.wustl.edu	37	11	6340701	6340701	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	6340701	6340701	C	T	SNP	PRKCDBP	ENST00000303927	human	ensembl	74_37	-1	known	missense	c.478	p.A160T	0.231	NULL	NULL	-	no_errors	PRKCDBP	HGNC	ENSG00000170955				13	0	0	11	2	15.3846
VEGFB	0	genome.wustl.edu	37	11	64004896	64004896	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	64004896	64004896	G	A	SNP	VEGFB	ENST00000309422	human	ensembl	74_37	+1	known	missense	c.415	p.A139T	1.000	NULL	pfam_PDGF/VEGF_dom,smart_PDGF/VEGF_dom,pfscan_PDGF/VEGF_dom	-	no_errors	VEGFB	HGNC	ENSG00000173511				24	0	0	18	3	14.2857
CDC42BPG	0	genome.wustl.edu	37	11	64595231	64595231	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	64595231	64595231	A	G	SNP	CDC42BPG	ENST00000342711	human	ensembl	74_37	-1	known	missense	c.3992	p.V1331A	1.000	pfam_Citron,smart_Citron	pfam_Prot_kinase_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,pfscan_CRIB_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	CDC42BPG	HGNC	ENSG00000171219				34	0	0	33	10	23.2558
BATF2	0	genome.wustl.edu	37	11	64757176	64757176	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	64757176	64757176	A	G	SNP	BATF2	ENST00000301887	human	ensembl	74_37	-1	known	missense	c.250	p.C84R	0.410	NULL	pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	BATF2	HGNC	ENSG00000168062				29	0	0	17	4	19.0476
EHBP1L1	0	genome.wustl.edu	37	11	65347891	65347891	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	65347891	65347891	A	G	SNP	EHBP1L1	ENST00000309295	human	ensembl	74_37	+1	known	missense	c.575	p.D192G	0.999	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	EHBP1L1	HGNC	ENSG00000173442				49	0	0	50	11	18.0328
FIBP	0	genome.wustl.edu	37	11	65652091	65652091	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	65652091	65652091	G	A	SNP	FIBP	ENST00000338369	human	ensembl	74_37	-1	known	silent	c.877	p.L293	1.000	pfam_FIBP	pfam_FIBP	-	no_errors	FIBP	HGNC	ENSG00000172500				57	0	0	40	7	14.8936
CATSPER1	0	genome.wustl.edu	37	11	65792929	65792929	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	65792929	65792929	C	T	SNP	CATSPER1	ENST00000312106	human	ensembl	74_37	-1	known	missense	c.922	p.A308T	0.001	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel	-	no_errors	CATSPER1	HGNC	ENSG00000175294				46	0	0	25	12	32.4324
RAB1B	0	genome.wustl.edu	37	11	66039698	66039698	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	66039698	66039698	A	G	SNP	RAB1B	ENST00000311481	human	ensembl	74_37	+1	known	missense	c.158	p.D53G	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_EF_GTP-bd_dom,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_EF_GTP-bd_dom,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB1B	HGNC	ENSG00000174903				216	1	0.460829	189	27	12.5
BRMS1	0	genome.wustl.edu	37	11	66109071	66109071	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	66109071	66109071	G	A	SNP	BRMS1	ENST00000425825	human	ensembl	74_37	-1	known	nonsense	c.163	p.R55*	1.000	NULL	pfam_Sds3	-	no_errors	BRMS1	HGNC	ENSG00000174744				227	0	0	209	22	9.52381
CORO1B	0	genome.wustl.edu	37	11	67208646	67208646	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	67208646	67208646	T	C	SNP	CORO1B	ENST00000341356	human	ensembl	74_37	-1	known	missense	c.706	p.T236A	1.000	superfamily_WD40_repeat_dom	pfam_DUF1900,pfam_DUF1899,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO1B	HGNC	ENSG00000172725				75	0	0	75	13	14.7727
GPR152	0	genome.wustl.edu	37	11	67218801	67218801	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	67218801	67218801	C	T	SNP	GPR152	ENST00000312457	human	ensembl	74_37	-1	known	silent	c.1395	p.P465	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR152	HGNC	ENSG00000175514				55	0	0	26	8	23.5294
NUDT8	0	genome.wustl.edu	37	11	67395817	67395817	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	67395817	67395817	T	G	SNP	NUDT8	ENST00000376693	human	ensembl	74_37	-1	known	missense	c.382	p.S128R	0.999	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	NUDT8	HGNC	ENSG00000167799				35	0	0	46	8	14.8148
KRTAP5-9	0	genome.wustl.edu	37	11	71259987	71259987	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	71259987	71259987	C	T	SNP	KRTAP5-9	ENST00000528743	human	ensembl	74_37	+1	known	missense	c.284	p.S95F	0.897	NULL	NULL	-	no_errors	KRTAP5-9	HGNC	ENSG00000254997				151	0	0	93	17	15.4545
ANAPC15	0	genome.wustl.edu	37	11	71822201	71822201	+	Splice_Site	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	71822201	71822201	A	G	SNP	ANAPC15	ENST00000227618	human	ensembl	74_37	-1	known	splice_site	c.120+2	e1+2	1.000	-	-	-	no_errors	ANAPC15	HGNC	ENSG00000110200				77	0	0	80	7	8.04598
CLPB	0	genome.wustl.edu	37	11	72013356	72013356	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	72013356	72013356	G	A	SNP	CLPB	ENST00000294053	human	ensembl	74_37	-1	known	nonsense	c.1249	p.R417*	1.000	pfam_ATPase_AAA-2,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,pfam_Zeta_toxin_domain,pfam_Sigma_54_int,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_ATPase_AAA-2,pfam_Ankyrin_rpt,pfam_Clp_ATPase_C,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,pfam_Zeta_toxin_domain,pfam_Sigma_54_int,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_AAA+_ATPase,prints_ClpA/B,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	CLPB	HGNC	ENSG00000162129				78	0	0	83	8	8.79121
CTSC	0	genome.wustl.edu	37	11	88027550	88027550	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	88027550	88027550	C	T	SNP	CTSC	ENST00000227266	human	ensembl	74_37	-1	known	missense	c.1016	p.R339H	0.976	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C	pfam_Peptidase_C1A_C,pfam_CathepsinC_exc,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSC	HGNC	ENSG00000109861				152	0	0	153	15	8.92857
FAT3	0	genome.wustl.edu	37	11	92430571	92430571	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	92430571	92430571	G	T	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	missense	c.3629	p.R1210M	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323				64	0	0	75	11	12.7907
MAML2	0	genome.wustl.edu	37	11	95712275	95712275	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	95712275	95712275	C	A	SNP	MAML2	ENST00000524717	human	ensembl	74_37	-1	known	missense	c.3308	p.S1103I	0.470	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML2	HGNC	ENSG00000184384				90	0	0	106	14	11.6667
DRAM1	0	genome.wustl.edu	37	12	102302036	102302036	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	102302036	102302036	C	A	SNP	DRAM1	ENST00000258534	human	ensembl	74_37	+1	known	missense	c.415	p.L139I	0.803	pfam_Frag1/DRAM/Sfk1	pfam_Frag1/DRAM/Sfk1	-	no_errors	DRAM1	HGNC	ENSG00000136048				109	1	0.909091	108	9	7.69231
STAB2	0	genome.wustl.edu	37	12	104160109	104160109	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	104160109	104160109	C	G	SNP	STAB2	ENST00000388887	human	ensembl	74_37	+1	known	missense	c.7651	p.L2551V	0.000	NULL	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_FAS1_domain,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB2	HGNC	ENSG00000136011				48	0	0	28	5	15.1515
NUAK1	0	genome.wustl.edu	37	12	106464587	106464587	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	106464587	106464587	C	T	SNP	NUAK1	ENST00000261402	human	ensembl	74_37	-1	known	missense	c.797	p.S266N	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	NUAK1	HGNC	ENSG00000074590				72	0	0	62	11	15.0685
NUAK1	0	genome.wustl.edu	37	12	106480539	106480539	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	106480539	106480539	G	A	SNP	NUAK1	ENST00000261402	human	ensembl	74_37	-1	known	silent	c.486	p.I162	0.573	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	NUAK1	HGNC	ENSG00000074590				54	0	0	46	11	19.2982
ACACB	0	genome.wustl.edu	37	12	109604665	109604665	+	Splice_Site	SNP	G	G	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	109604665	109604665	G	T	SNP	ACACB	ENST00000338432	human	ensembl	74_37	+1	known	splice_site	c.654-1	e2-1	1.000	-	-	-	no_errors	ACACB	HGNC	ENSG00000076555				38	0	0	40	9	18.3673
ATP2A2	0	genome.wustl.edu	37	12	110781180	110781180	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	110781180	110781180	G	A	SNP	ATP2A2	ENST00000539276	human	ensembl	74_37	+1	known	missense	c.2462	p.R821Q	1.000	pfam_ATPase_P-typ_cation-transptr_C,tigrfam_ATPase_P-typ_Ca-transp_IIA	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_IIA,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2A2	HGNC	ENSG00000174437				90	0	0	103	14	11.9658
ATXN2	0	genome.wustl.edu	37	12	111893896	111893896	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	111893896	111893896	C	T	SNP	ATXN2	ENST00000377617	human	ensembl	74_37	-1	known	silent	c.3681	p.T1227	0.984	NULL	pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom	-	no_errors	ATXN2	HGNC	ENSG00000204842				201	0	0	176	28	13.7255
ACAD10	0	genome.wustl.edu	37	12	112140085	112140085	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	112140085	112140085	C	T	SNP	ACAD10	ENST00000455480	human	ensembl	74_37	+1	known	nonsense	c.307	p.R103*	0.907	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_HAD-SF_ppase_IA/epoxid_hydro_N	pfam_Aminoglycoside_PTrfase,pfam_AcylCo_DH/oxidase_C,pfam_Acyl-CoA_DH_2_C,pfam_AcylCoA_DH/ox_N,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_HAD-like_dom,superfamily_AcylCoA_DH/oxidase_NM_dom,superfamily_Kinase-like_dom,superfamily_AcylCo_DH/oxidase_C,superfamily_HAD-like_dom,prints_HAD-SF_hydro_IA,tigrfam_HAD-SF_ppase_IA/epoxid_hydro_N,tigrfam_HAD-SF_hydro_IA	-	no_errors	ACAD10	HGNC	ENSG00000111271				116	0	0	127	21	14.1892
HECTD4	0	genome.wustl.edu	37	12	112650367	112650367	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	112650367	112650367	T	C	SNP	HECTD4	ENST00000377560	human	ensembl	74_37	-1	known	missense	c.7037	p.Y2346C	1.000	superfamily_ConA-like_lec_gl_sf	pfam_HECT,superfamily_HECT,superfamily_ConA-like_lec_gl_sf,smart_HECT,pfscan_HECT	-	no_errors	HECTD4	HGNC	ENSG00000173064				81	0	0	81	16	16.4948
DTX1	0	genome.wustl.edu	37	12	113532908	113532908	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	113532908	113532908	C	T	SNP	DTX1	ENST00000257600	human	ensembl	74_37	+1	known	missense	c.1448	p.P483L	0.997	NULL	pfam_WWE-dom,smart_WWE-dom_subgr,smart_Znf_RING,pfscan_WWE-dom,pfscan_Znf_RING	-	no_errors	DTX1	HGNC	ENSG00000135144				65	0	0	34	4	10.5263
TBX3	0	genome.wustl.edu	37	12	115120662	115120662	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	115120662	115120662	T	C	SNP	TBX3	ENST00000257566	human	ensembl	74_37	-1	known	missense	c.344	p.Q115R	1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX3	HGNC	ENSG00000135111				74	0	0	60	11	15.493
SRRM4	0	genome.wustl.edu	37	12	119540171	119540171	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	119540171	119540171	G	A	SNP	SRRM4	ENST00000267260	human	ensembl	74_37	+1	known	missense	c.262	p.A88T	0.011	NULL	NULL	-	no_errors	SRRM4	HGNC	ENSG00000139767				31	0	0	27	3	10
ERC1	0	genome.wustl.edu	37	12	1213982	1213982	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	1213982	1213982	G	A	SNP	ERC1	ENST00000360905	human	ensembl	74_37	+1	known	missense	c.1153	p.E385K	1.000	pfam_CAZ_cplx_RIM-bd_prot	pfam_CAZ_cplx_RIM-bd_prot,pfam_Rab-bd_FIP-RBD,superfamily_Prefoldin	-	no_errors	ERC1	HGNC	ENSG00000082805				80	0	0	80	19	19.1919
RSRC2	0	genome.wustl.edu	37	12	123001921	123001921	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	123001921	123001921	C	T	SNP	RSRC2	ENST00000331738	human	ensembl	74_37	-1	known	missense	c.455	p.R152Q	1.000	NULL	NULL	-	no_errors	RSRC2	HGNC	ENSG00000111011				71	0	0	79	10	11.236
KNTC1	0	genome.wustl.edu	37	12	123060124	123060124	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	123060124	123060124	C	T	SNP	KNTC1	ENST00000333479	human	ensembl	74_37	+1	known	missense	c.2417	p.A806V	0.909	NULL	pfam_RZZ-complex_KNTC1/ROD_C,superfamily_Quino_amine_DH_bsu,superfamily_WD40_repeat_dom,superfamily_PAH	-	no_errors	KNTC1	HGNC	ENSG00000184445				15	0	0	23	4	14.8148
DNAH10	0	genome.wustl.edu	37	12	124258738	124258738	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	124258738	124258738	T	G	SNP	DNAH10	ENST00000409039	human	ensembl	74_37	+1	known	missense	c.365	p.I122S	0.006	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_PyrdxlP-dep_Trfase,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653				122	0	0	158	33	17.2775
DNAH10	0	genome.wustl.edu	37	12	124341746	124341746	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	124341746	124341746	G	A	SNP	DNAH10	ENST00000409039	human	ensembl	74_37	+1	known	silent	c.6228	p.A2076	0.006	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_PyrdxlP-dep_Trfase,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653				69	0	0	38	17	30.9091
NCOR2	0	genome.wustl.edu	37	12	124857107	124857107	+	Silent	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	124857107	124857107	A	G	SNP	NCOR2	ENST00000356219	human	ensembl	74_37	-1	known	silent	c.2268	p.T756	0.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR2	HGNC	ENSG00000196498				48	0	0	31	4	11.4286
GPR19	0	genome.wustl.edu	37	12	12814577	12814577	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	12814577	12814577	C	T	SNP	GPR19	ENST00000332427	human	ensembl	74_37	-1	known	missense	c.806	p.R269Q	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR19	HGNC	ENSG00000183150				36	0	0	59	11	15.7143
FZD10	0	genome.wustl.edu	37	12	130648883	130648883	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	130648883	130648883	C	T	SNP	FZD10	ENST00000229030	human	ensembl	74_37	+1	known	missense	c.1396	p.R466C	1.000	pfam_Frizzled,pfscan_GPCR_2-like	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD10	HGNC	ENSG00000111432				58	0	0	55	6	9.83607
PGAM5	0	genome.wustl.edu	37	12	133295367	133295367	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	133295367	133295367	G	A	SNP	PGAM5	ENST00000317555	human	ensembl	74_37	+1	known	missense	c.739	p.A247T	0.000	NULL	pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1	-	no_errors	PGAM5	HGNC	ENSG00000247077				64	0	0	53	12	18.4615
ATF7IP	0	genome.wustl.edu	37	12	14577496	14577496	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	14577496	14577496	C	A	SNP	ATF7IP	ENST00000261168	human	ensembl	74_37	+1	known	missense	c.647	p.P216H	0.098	NULL	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	ATF7IP	HGNC	ENSG00000171681				127	1	0.78125	115	22	16.0584
PTPRO	0	genome.wustl.edu	37	12	15650227	15650227	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	15650227	15650227	C	T	SNP	PTPRO	ENST00000281171	human	ensembl	74_37	+1	known	missense	c.398	p.P133L	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRO	HGNC	ENSG00000151490				155	0	0	146	19	11.5152
PIK3C2G	0	genome.wustl.edu	37	12	18719882	18719882	+	Splice_Site	SNP	G	G	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	18719882	18719882	G	T	SNP	PIK3C2G	ENST00000538779	human	ensembl	74_37	+1	known	splice_site	c.3903-1	e28-1	1.000	-	-	-	no_errors	PIK3C2G	HGNC	ENSG00000139144				63	0	0	70	9	11.3924
SLCO1C1	0	genome.wustl.edu	37	12	20868189	20868189	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	20868189	20868189	G	A	SNP	SLCO1C1	ENST00000381552	human	ensembl	74_37	+1	known	missense	c.646	p.A216T	1.000	pfam_OA_transporter,pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO1C1	HGNC	ENSG00000139155				95	0	0	82	18	18
SLCO1B3	0	genome.wustl.edu	37	12	21242842	21242842	+	Silent	SNP	A	A	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	21242842	21242842	A	T	SNP	SLCO1B3	ENST00000553473	human	ensembl	74_37	+1	known	silent	c.2049	p.G683	0.066	superfamily_MFS_dom_general_subst_transpt	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO1B3	HGNC	ENSG00000111700				36	0	0	48	6	11.1111
IAPP	0	genome.wustl.edu	37	12	21531349	21531349	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	21531349	21531349	T	A	SNP	IAPP	ENST00000240652	human	ensembl	74_37	+1	known	missense	c.259	p.L87M	0.000	NULL	pfam_Procalcitonin/adrenomedullin,smart_Calcitonin_peptide-like,prints_Pro-islet_amyloid_polypep	-	no_errors	IAPP	HGNC	ENSG00000121351				82	0	0	78	12	13.3333
ABCC9	0	genome.wustl.edu	37	12	21971084	21971084	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	21971084	21971084	C	T	SNP	ABCC9	ENST00000261200	human	ensembl	74_37	-1	known	silent	c.3771	p.T1257	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_Sulphorea_rcpt,prints_Sulphonylurea_rcpt-2	-	no_errors	ABCC9	HGNC	ENSG00000069431				180	0	0	192	19	9.00474
ITPR2	0	genome.wustl.edu	37	12	26636652	26636652	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	26636652	26636652	C	A	SNP	ITPR2	ENST00000381340	human	ensembl	74_37	-1	known	missense	c.5991	p.Q1997H	1.000	pfam_RIH_assoc-dom,superfamily_ARM-type_fold	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR2	HGNC	ENSG00000123104				97	0	0	112	16	12.5
PPFIBP1	0	genome.wustl.edu	37	12	27842020	27842020	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	27842020	27842020	C	T	SNP	PPFIBP1	ENST00000318304	human	ensembl	74_37	+1	known	nonsense	c.2587	p.R863*	1.000	pfam_SAM_2,superfamily_SAM/pointed,smart_SAM	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIBP1	HGNC	ENSG00000110841				99	0	0	93	10	9.70874
PARP11	0	genome.wustl.edu	37	12	3921464	3921464	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	3921464	3921464	C	A	SNP	PARP11	ENST00000228820	human	ensembl	74_37	-1	known	missense	c.842	p.R281L	1.000	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_WWE-dom,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP11	HGNC	ENSG00000111224				94	0	0	96	16	14.2857
KMT2D	0	genome.wustl.edu	37	12	49415918	49415918	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	49415918	49415918	A	C	SNP	KMT2D	ENST00000301067	human	ensembl	74_37	-1	known	missense	c.16429	p.C5477G	1.000	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2D	HGNC	ENSG00000167548				205	0	0	155	20	11.4286
KCNH3	0	genome.wustl.edu	37	12	49948282	49948282	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	49948282	49948282	G	A	SNP	KCNH3	ENST00000257981	human	ensembl	74_37	+1	known	missense	c.2081	p.R694H	0.723	superfamily_cNMP-bd-like,smart_cNMP-bd_dom	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_cNMP-bd_dom,pfam_PAS_4,pfam_PAS_fold,pfam_PAS_fold_3,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH3	HGNC	ENSG00000135519				53	0	0	53	16	23.1884
PRPF40B	0	genome.wustl.edu	37	12	50025218	50025218	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	50025218	50025218	C	T	SNP	PRPF40B	ENST00000548825	human	ensembl	74_37	+1	known	missense	c.119	p.P40L	1.000	NULL	pfam_FF_domain,pfam_WW_dom,superfamily_FF_domain,superfamily_WW_dom,smart_WW_dom,smart_FF_domain,pfscan_WW_dom	-	no_errors	PRPF40B	HGNC	ENSG00000110844				127	0	0	101	21	17.2131
SLC4A8	0	genome.wustl.edu	37	12	51882498	51882498	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	51882498	51882498	C	T	SNP	SLC4A8	ENST00000453097	human	ensembl	74_37	+1	known	missense	c.2302	p.R768C	1.000	pfam_HCO3_transpt_C,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A8	HGNC	ENSG00000050438				104	0	0	93	19	16.9643
CSAD	0	genome.wustl.edu	37	12	53565756	53565756	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	53565756	53565756	C	T	SNP	CSAD	ENST00000267085	human	ensembl	74_37	-1	known	missense	c.442	p.A148T	1.000	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase	pfam_PyrdxlP-dep_de-COase,pfam_Aminotrans_V/Cys_dSase,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase	-	no_errors	CSAD	HGNC	ENSG00000139631				42	0	0	41	5	10.8696
CALCOCO1	0	genome.wustl.edu	37	12	54115307	54115307	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	54115307	54115307	C	A	SNP	CALCOCO1	ENST00000550804	human	ensembl	74_37	-1	known	missense	c.702	p.E234D	0.995	pfam_CoCoA	pfam_CoCoA	-	no_errors	CALCOCO1	HGNC	ENSG00000012822				363	1	0.274725	337	48	12.4675
HOXC6	0	genome.wustl.edu	37	12	54422366	54422366	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	54422366	54422366	C	T	SNP	HOXC6	ENST00000243108	human	ensembl	74_37	+1	known	missense	c.61	p.L21F	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXC6	HGNC	ENSG00000197757				48	0	0	43	7	14
NCKAP1L	0	genome.wustl.edu	37	12	54913073	54913073	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	54913073	54913073	G	A	SNP	NCKAP1L	ENST00000293373	human	ensembl	74_37	+1	known	missense	c.1582	p.V528I	0.917	pfam_Nck-associated_protein-1	pfam_Nck-associated_protein-1,superfamily_Nucl_hormone_rcpt_ligand-bd	-	no_errors	NCKAP1L	HGNC	ENSG00000123338				108	1	0.917431	92	16	14.8148
NCKAP1L	0	genome.wustl.edu	37	12	54920460	54920460	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	54920460	54920460	G	A	SNP	NCKAP1L	ENST00000293373	human	ensembl	74_37	+1	known	missense	c.2305	p.A769T	1.000	pfam_Nck-associated_protein-1	pfam_Nck-associated_protein-1,superfamily_Nucl_hormone_rcpt_ligand-bd	-	no_errors	NCKAP1L	HGNC	ENSG00000123338				42	0	0	34	8	19.0476
OR6C70	0	genome.wustl.edu	37	12	55863562	55863562	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	55863562	55863562	A	G	SNP	OR6C70	ENST00000327335	human	ensembl	74_37	-1	known	missense	c.361	p.Y121H	0.934	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6C70	HGNC	ENSG00000184954				91	0	0	104	16	13.3333
ERBB3	0	genome.wustl.edu	37	12	56487323	56487323	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	56487323	56487323	G	A	SNP	ERBB3	ENST00000267101	human	ensembl	74_37	+1	known	missense	c.1469	p.R490H	0.005	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,smart_Furin_repeat	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Furin-like_Cys-rich_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB3	HGNC	ENSG00000065361				60	0	0	52	7	11.8644
ERBB3	0	genome.wustl.edu	37	12	56490366	56490366	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	56490366	56490366	T	G	SNP	ERBB3	ENST00000267101	human	ensembl	74_37	+1	known	missense	c.2135	p.L712R	0.996	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Furin-like_Cys-rich_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB3	HGNC	ENSG00000065361				231	2	0.858369	234	38	13.9706
ERBB3	0	genome.wustl.edu	37	12	56495459	56495459	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	56495459	56495459	C	A	SNP	ERBB3	ENST00000267101	human	ensembl	74_37	+1	known	missense	c.3649	p.L1217I	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Furin-like_Cys-rich_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB3	HGNC	ENSG00000065361				62	0	0	69	8	10.3896
ESYT1	0	genome.wustl.edu	37	12	56532561	56532561	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	56532561	56532561	G	A	SNP	ESYT1	ENST00000267113	human	ensembl	74_37	+1	known	missense	c.2473	p.G825S	0.999	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,prints_C2_dom,pfscan_C2_dom	-	no_errors	ESYT1	HGNC	ENSG00000139641				196	0	0	173	30	14.7783
TIMELESS	0	genome.wustl.edu	37	12	56817369	56817369	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	56817369	56817369	G	A	SNP	TIMELESS	ENST00000553532	human	ensembl	74_37	-1	known	missense	c.2089	p.R697C	1.000	NULL	pfam_TIMELESS_C,pfam_Timeless	-	no_errors	TIMELESS	HGNC	ENSG00000111602				66	0	0	69	10	12.6582
PRIM1	0	genome.wustl.edu	37	12	57128007	57128007	+	Silent	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	57128007	57128007	T	C	SNP	PRIM1	ENST00000338193	human	ensembl	74_37	-1	known	silent	c.1167	p.A389	0.933	NULL	pfam_DNA_primase_S,tigrfam_DNA_primase_ssu_euk/arc	-	no_errors	PRIM1	HGNC	ENSG00000198056				40	0	0	35	6	14.6341
MARS	0	genome.wustl.edu	37	12	57906639	57906639	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	57906639	57906639	A	G	SNP	MARS	ENST00000262027	human	ensembl	74_37	+1	known	missense	c.1859	p.Y620C	1.000	pfam_Methionyl/Leucyl_tRNA_Synth,tigrfam_Met-tRNA_synth	pfam_Methionyl/Leucyl_tRNA_Synth,pfam_WHEP-TRS,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Glutathione-S-Trfase_C-like,superfamily_S15_NS1_RNA-bd,superfamily_Thioredoxin-like_fold,pfscan_WHEP-TRS,prints_Met-tRNA_synth,tigrfam_Met-tRNA_synth	-	no_errors	MARS	HGNC	ENSG00000166986				146	1	0.680272	128	25	16.3399
VWF	0	genome.wustl.edu	37	12	6131131	6131131	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	6131131	6131131	G	A	SNP	VWF	ENST00000261405	human	ensembl	74_37	-1	known	silent	c.3609	p.G1203	0.992	pirsf_VWF	pirsf_VWF,pfam_VWF_type-D,pfam_VWF_A,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_VWF_A,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_A,pfscan_VWF_C	-	no_errors	VWF	HGNC	ENSG00000110799				159	0	0	147	20	11.976
VWF	0	genome.wustl.edu	37	12	6161758	6161758	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	6161758	6161758	C	T	SNP	VWF	ENST00000261405	human	ensembl	74_37	-1	known	missense	c.2137	p.G713S	1.000	pirsf_VWF	pirsf_VWF,pfam_VWF_type-D,pfam_VWF_A,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_VWF_A,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_A,pfscan_VWF_C	-	no_errors	VWF	HGNC	ENSG00000110799				108	1	0.917431	90	18	16.6667
ACRBP	0	genome.wustl.edu	37	12	6749364	6749364	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	6749364	6749364	G	A	SNP	ACRBP	ENST00000229243	human	ensembl	74_37	-1	known	silent	c.1287	p.Y429	0.000	NULL	pfam_Proacrosin-bd	-	no_errors	ACRBP	HGNC	ENSG00000111644				57	0	0	55	14	20.2899
DYRK2	0	genome.wustl.edu	37	12	68051258	68051258	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	68051258	68051258	C	T	SNP	DYRK2	ENST00000344096	human	ensembl	74_37	+1	known	missense	c.571	p.R191C	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	DYRK2	HGNC	ENSG00000127334				47	0	0	52	6	10.3448
DYRK2	0	genome.wustl.edu	37	12	68052038	68052038	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	68052038	68052038	C	T	SNP	DYRK2	ENST00000344096	human	ensembl	74_37	+1	known	nonsense	c.1351	p.R451*	1.000	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	DYRK2	HGNC	ENSG00000127334				52	0	0	52	13	20
SPSB2	0	genome.wustl.edu	37	12	6981674	6981674	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	6981674	6981674	C	T	SNP	SPSB2	ENST00000523102	human	ensembl	74_37	-1	known	nonsense	c.392	p.W131*	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_SOCS_C,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,smart_SOCS_C,pfscan_B30.2/SPRY,pfscan_SOCS_C	-	no_errors	SPSB2	HGNC	ENSG00000111671				45	0	0	26	8	23.5294
BBS10	0	genome.wustl.edu	37	12	76739774	76739774	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	76739774	76739774	G	A	SNP	BBS10	ENST00000393262	human	ensembl	74_37	-1	known	missense	c.1991	p.A664V	0.904	superfamily_Cpn60/TCP-1	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom	-	no_errors	BBS10	HGNC	ENSG00000179941				125	0	0	91	16	14.9533
PLXNC1	0	genome.wustl.edu	37	12	94631565	94631565	+	Silent	SNP	C	C	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	94631565	94631565	C	A	SNP	PLXNC1	ENST00000258526	human	ensembl	74_37	+1	known	silent	c.2106	p.T702	0.992	pfam_IPT,superfamily_Ig_E-set	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Plexin_repeat,pfam_IPT,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Plexin-like_fold,superfamily_Ig_E-set,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNC1	HGNC	ENSG00000136040				56	0	0	57	8	12.3077
TPP2	0	genome.wustl.edu	37	13	103281921	103281921	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	13	103281921	103281921	C	T	SNP	TPP2	ENST00000376065	human	ensembl	74_37	+1	known	missense	c.1106	p.T369I	1.000	pfam_Peptidase_S8/S53_dom,superfamily_Peptidase_S8/S53_dom	pfam_Peptidase_S8/S53_dom,pfam_Peptidase_S8A_TPPII,superfamily_Peptidase_S8/S53_dom,prints_Peptidase_S8_subtilisin-rel	-	no_errors	TPP2	HGNC	ENSG00000134900				39	0	0	36	10	21.7391
DAOA	0	genome.wustl.edu	37	13	106142341	106142341	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	13	106142341	106142341	C	T	SNP	DAOA	ENST00000375936	human	ensembl	74_37	+1	known	missense	c.373	p.P125S	0.000	NULL	NULL	-	no_errors	DAOA	HGNC	ENSG00000182346				28	0	0	17	5	22.7273
TFDP1	0	genome.wustl.edu	37	13	114265347	114265347	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	13	114265347	114265347	T	A	SNP	TFDP1	ENST00000375370	human	ensembl	74_37	+1	known	missense	c.49	p.F17I	1.000	pirsf_Transcrpt_fac_DP	pfam_Transc_factor_DP_C,pfam_E2F_TDP,pirsf_Transcrpt_fac_DP	-	no_errors	TFDP1	HGNC	ENSG00000198176				153	0	0	162	26	13.8298
MPHOSPH8	0	genome.wustl.edu	37	13	20221160	20221160	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	13	20221160	20221160	G	A	SNP	MPHOSPH8	ENST00000414242	human	ensembl	74_37	+1	known	missense	c.947	p.S316N	0.000	NULL	pfam_Ankyrin_rpt,pfam_Chromo_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Chromo_domain/shadow	-	no_errors	MPHOSPH8	HGNC	ENSG00000196199				129	0	0	116	17	12.782
XPO4	0	genome.wustl.edu	37	13	21396376	21396376	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	13	21396376	21396376	C	T	SNP	XPO4	ENST00000255305	human	ensembl	74_37	-1	known	missense	c.893	p.C298Y	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	XPO4	HGNC	ENSG00000132953				109	0	0	122	17	12.2302
PARP4	0	genome.wustl.edu	37	13	25077812	25077812	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	13	25077812	25077812	C	T	SNP	PARP4	ENST00000381989	human	ensembl	74_37	-1	known	missense	c.103	p.G35R	1.000	pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_VIT,pfam_VWF_A,pfam_BRCT_dom,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_BRCT_dom,smart_BRCT_dom,smart_VIT,smart_VWF_A,pfscan_BRCT_dom,pfscan_VWF_A,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP4	HGNC	ENSG00000102699				67	0	0	92	10	9.80392
AMER2	0	genome.wustl.edu	37	13	25745590	25745590	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	13	25745590	25745590	G	A	SNP	AMER2	ENST00000515384	human	ensembl	74_37	-1	known	silent	c.168	p.A56	0.997	NULL	pfam_Uncharacterised_FAM123	-	no_errors	AMER2	HGNC	ENSG00000165566				21	0	0	16	6	27.2727
MTUS2	0	genome.wustl.edu	37	13	29598991	29598991	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	13	29598991	29598991	G	A	SNP	MTUS2	ENST00000431530	human	ensembl	74_37	+1	known	silent	c.186	p.K62	0.005	NULL	NULL	-	no_errors	MTUS2	HGNC	ENSG00000132938				56	0	0	63	8	11.2676
HSPH1	0	genome.wustl.edu	37	13	31719831	31719831	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	13	31719831	31719831	T	C	SNP	HSPH1	ENST00000445273	human	ensembl	74_37	-1	known	missense	c.1459	p.N487D	1.000	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPH1	HGNC	ENSG00000120694				79	0	0	83	18	17.8218
PDS5B	0	genome.wustl.edu	37	13	33258137	33258137	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	13	33258137	33258137	A	T	SNP	PDS5B	ENST00000315596	human	ensembl	74_37	+1	known	nonsense	c.1180	p.R394*	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	PDS5B	HGNC	ENSG00000083642				84	0	0	89	16	15.2381
PDS5B	0	genome.wustl.edu	37	13	33344698	33344698	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	13	33344698	33344698	G	T	SNP	PDS5B	ENST00000315596	human	ensembl	74_37	+1	known	missense	c.4064	p.R1355I	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	PDS5B	HGNC	ENSG00000083642				83	0	0	81	6	6.89655
SPG20	0	genome.wustl.edu	37	13	36905589	36905589	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	13	36905589	36905589	C	A	SNP	SPG20	ENST00000355182	human	ensembl	74_37	-1	known	missense	c.955	p.D319Y	1.000	NULL	pfam_Senescence/spartin,pfam_MIT,smart_MIT	-	no_errors	SPG20	HGNC	ENSG00000133104				126	0	0	110	27	19.708
CCNA1	0	genome.wustl.edu	37	13	37012843	37012843	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	13	37012843	37012843	C	T	SNP	CCNA1	ENST00000255465	human	ensembl	74_37	+1	known	silent	c.732	p.R244	0.000	pfam_Cyclin_N,superfamily_Cyclin-like,pirsf_Cyclin_A/B/D/E	pfam_Cyclin_N,pfam_Cyclin_C-dom,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	-	no_errors	CCNA1	HGNC	ENSG00000133101				72	0	0	65	12	15.5844
SUPT20H	0	genome.wustl.edu	37	13	37618213	37618213	+	Splice_Site	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	13	37618213	37618213	A	G	SNP	SUPT20H	ENST00000350612	human	ensembl	74_37	-1	known	splice_site	c.396+2	e6+2	1.000	-	-	-	no_errors	SUPT20H	HGNC	ENSG00000102710				34	0	0	38	8	17.3913
POSTN	0	genome.wustl.edu	37	13	38158194	38158194	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	13	38158194	38158194	C	T	SNP	POSTN	ENST00000379747	human	ensembl	74_37	-1	known	silent	c.1155	p.T385	0.782	pfam_FAS1_domain,superfamily_FAS1_domain,pirsf_TGFb-ind_bIGH3/osteoblast_fac2,pfscan_FAS1_domain	pfam_FAS1_domain,superfamily_FAS1_domain,smart_FAS1_domain,pirsf_TGFb-ind_bIGH3/osteoblast_fac2,pfscan_EMI_domain,pfscan_FAS1_domain	-	no_errors	POSTN	HGNC	ENSG00000133110				38	0	0	44	6	12
FREM2	0	genome.wustl.edu	37	13	39263555	39263555	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	13	39263555	39263555	C	T	SNP	FREM2	ENST00000280481	human	ensembl	74_37	+1	known	missense	c.2074	p.R692C	0.011	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893				98	0	0	86	12	12.2449
SUGT1P3	0	genome.wustl.edu	37	13	41495656	41495656	+	RNA	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	13	41495656	41495656	C	T	SNP	SUGT1P3	ENST00000304932	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	SUGT1P3	HGNC	ENSG00000239827				70	0	0	49	11	18.3333
WBP4	0	genome.wustl.edu	37	13	41650292	41650292	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	13	41650292	41650292	G	A	SNP	WBP4	ENST00000379487	human	ensembl	74_37	+1	known	silent	c.675	p.S225	0.013	NULL	pfam_WW_dom,pfam_Znf_U1-C,superfamily_WW_dom,smart_Znf_U1,smart_WW_dom,pfscan_WW_dom,pfscan_Znf_C2H2_matrin	-	no_errors	WBP4	HGNC	ENSG00000120688				64	0	0	58	11	15.942
KBTBD6	0	genome.wustl.edu	37	13	41705321	41705321	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	13	41705321	41705321	G	A	SNP	KBTBD6	ENST00000379485	human	ensembl	74_37	-1	known	nonsense	c.1327	p.R443*	0.947	pfam_Kelch_1,smart_Kelch_1	pfam_BTB_POZ,pfam_BACK,pfam_Kelch_1,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KBTBD6	HGNC	ENSG00000165572				105	0	0	110	24	17.9104
VWA8	0	genome.wustl.edu	37	13	42303703	42303703	+	Silent	SNP	T	T	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	13	42303703	42303703	T	A	SNP	VWA8	ENST00000379310	human	ensembl	74_37	-1	known	silent	c.2613	p.L871	0.998	pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_ATPase_dyneun-rel_AAA,pfam_VWF_A,superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA8	HGNC	ENSG00000102763				51	0	0	85	6	6.59341
VWA8	0	genome.wustl.edu	37	13	42407654	42407654	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	13	42407654	42407654	C	T	SNP	VWA8	ENST00000379310	human	ensembl	74_37	-1	known	missense	c.1439	p.R480H	1.000	pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_ATPase_dyneun-rel_AAA,pfam_VWF_A,superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA8	HGNC	ENSG00000102763				31	0	0	30	7	18.9189
DGKH	0	genome.wustl.edu	37	13	42793377	42793377	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	13	42793377	42793377	G	A	SNP	DGKH	ENST00000337343	human	ensembl	74_37	+1	known	silent	c.3225	p.S1075	0.687	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_SAM_2,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_SAM_type1,superfamily_SAM/pointed,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_SAM,pfscan_Pleckstrin_homology,pfscan_SAM,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKH	HGNC	ENSG00000102780				160	0	0	170	31	15.4229
PIBF1	0	genome.wustl.edu	37	13	73369613	73369613	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	13	73369613	73369613	G	A	SNP	PIBF1	ENST00000326291	human	ensembl	74_37	+1	known	missense	c.470	p.R157H	1.000	NULL	superfamily_t-SNARE	-	no_errors	PIBF1	HGNC	ENSG00000083535				95	0	0	104	16	13.3333
GPC5	0	genome.wustl.edu	37	13	92345711	92345711	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	13	92345711	92345711	G	A	SNP	GPC5	ENST00000377067	human	ensembl	74_37	+1	known	missense	c.596	p.R199Q	0.085	pfam_Glypican	pfam_Glypican	-	no_errors	GPC5	HGNC	ENSG00000179399				75	0	0	56	11	16.4179
IPO5	0	genome.wustl.edu	37	13	98642694	98642694	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	13	98642694	98642694	C	T	SNP	IPO5	ENST00000261574	human	ensembl	74_37	+1	known	missense	c.626	p.T209M	0.978	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold,pfscan_Importin-beta_N	-	no_errors	IPO5	HGNC	ENSG00000065150				66	0	0	60	6	9.09091
WDR25	0	genome.wustl.edu	37	14	100847811	100847811	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	14	100847811	100847811	C	T	SNP	WDR25	ENST00000335290	human	ensembl	74_37	+1	known	missense	c.550	p.R184W	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR25	HGNC	ENSG00000176473				124	0	0	109	18	14.1732
AHNAK2	0	genome.wustl.edu	37	14	105412736	105412736	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	14	105412736	105412736	G	A	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	nonsense	c.9052	p.Q3018*	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				306	0	0	238	42	15
BRF1	0	genome.wustl.edu	37	14	105677548	105677548	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	14	105677548	105677548	T	C	SNP	BRF1	ENST00000546474	human	ensembl	74_37	-1	known	missense	c.1907	p.Y636C	0.813	NULL	pfam_TFIIB_cyclin,pfam_BRF1_TBP-bd,pfam_Znf_TFIIB,superfamily_Cyclin-like,smart_Cyclin-like,pfscan_Znf_TFIIB,prints_TFIIB	-	no_errors	BRF1	HGNC	ENSG00000185024				32	0	0	32	7	17.9487
OR4Q3	0	genome.wustl.edu	37	14	20216515	20216515	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	14	20216515	20216515	C	G	SNP	OR4Q3	ENST00000331723	human	ensembl	74_37	+1	known	missense	c.929	p.P310R	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4Q3	HGNC	ENSG00000182652				86	0	0	87	12	12.1212
TEP1	0	genome.wustl.edu	37	14	20871938	20871938	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	14	20871938	20871938	A	G	SNP	TEP1	ENST00000262715	human	ensembl	74_37	-1	known	missense	c.1138	p.Y380H	1.000	pfam_TROVE,pfscan_TROVE	pfam_TROVE,pfam_TEP1_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pfscan_NACHT_NTPase,pfscan_TROVE,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TEP1	HGNC	ENSG00000129566				58	0	0	37	6	13.9535
ARHGEF40	0	genome.wustl.edu	37	14	21542358	21542358	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	14	21542358	21542358	C	T	SNP	ARHGEF40	ENST00000298694	human	ensembl	74_37	+1	known	missense	c.469	p.R157W	0.950	NULL	pfam_DH-domain,superfamily_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF40	HGNC	ENSG00000165801				37	0	0	31	4	11.4286
ACIN1	0	genome.wustl.edu	37	14	23528376	23528376	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	14	23528376	23528376	T	C	SNP	ACIN1	ENST00000262710	human	ensembl	74_37	-1	known	missense	c.4007	p.D1336G	1.000	NULL	pfam_SAP_dom,smart_SAP_dom,pfscan_SAP_dom	-	no_errors	ACIN1	HGNC	ENSG00000100813				61	0	0	37	4	9.7561
AP1G2	0	genome.wustl.edu	37	14	24033782	24033782	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	14	24033782	24033782	C	T	SNP	AP1G2	ENST00000308724	human	ensembl	74_37	-1	known	missense	c.910	p.A304T	0.889	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP1_complex_gsu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP1_complex_gsu,pfscan_Clathrin_g-adaptin_app	-	no_errors	AP1G2	HGNC	ENSG00000213983				64	0	0	46	6	11.5385
TM9SF1	0	genome.wustl.edu	37	14	24664214	24664214	+	Silent	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	14	24664214	24664214	T	C	SNP	TM9SF1	ENST00000556387	human	ensembl	74_37	-1	known	silent	c.639	p.V213	0.035	NULL	pfam_EMP70,pfam_Snf7	-	no_errors	TM9SF1	HGNC	ENSG00000100926				67	0	0	70	6	7.89474
NOVA1	0	genome.wustl.edu	37	14	27064621	27064621	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	14	27064621	27064621	T	C	SNP	NOVA1	ENST00000539517	human	ensembl	74_37	-1	known	missense	c.275	p.Y92C	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	NOVA1	HGNC	ENSG00000139910				120	0	0	114	24	17.3913
ARHGAP5	0	genome.wustl.edu	37	14	32561215	32561215	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	14	32561215	32561215	G	A	SNP	ARHGAP5	ENST00000345122	human	ensembl	74_37	+1	known	missense	c.1340	p.G447E	1.000	superfamily_FF_domain,smart_FF_domain	pfam_RhoGAP_dom,pfam_FF_domain,pfam_Small_GTPase,superfamily_Rho_GTPase_activation_prot,superfamily_P-loop_NTPase,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom,prints_Small_GTPase	-	no_errors	ARHGAP5	HGNC	ENSG00000100852				104	0	0	124	12	8.82353
ARHGAP5	0	genome.wustl.edu	37	14	32561281	32561281	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	14	32561281	32561281	C	T	SNP	ARHGAP5	ENST00000345122	human	ensembl	74_37	+1	known	missense	c.1406	p.A469V	1.000	superfamily_FF_domain,smart_FF_domain	pfam_RhoGAP_dom,pfam_FF_domain,pfam_Small_GTPase,superfamily_Rho_GTPase_activation_prot,superfamily_P-loop_NTPase,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom,prints_Small_GTPase	-	no_errors	ARHGAP5	HGNC	ENSG00000100852				107	1	0.925926	133	24	15.2866
ARHGAP5	0	genome.wustl.edu	37	14	32623920	32623920	+	Silent	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	14	32623920	32623920	A	G	SNP	ARHGAP5	ENST00000345122	human	ensembl	74_37	+1	known	silent	c.4275	p.R1425	1.000	superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_FF_domain,pfam_Small_GTPase,superfamily_Rho_GTPase_activation_prot,superfamily_P-loop_NTPase,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom,prints_Small_GTPase	-	no_errors	ARHGAP5	HGNC	ENSG00000100852				45	0	0	58	13	18.3099
PNN	0	genome.wustl.edu	37	14	39650999	39650999	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	14	39650999	39650999	C	T	SNP	PNN	ENST00000216832	human	ensembl	74_37	+1	known	nonsense	c.2086	p.R696*	1.000	NULL	pfam_Pinin_SDK_N,pfam_Pinin_SDK_MemA	-	no_errors	PNN	HGNC	ENSG00000100941				150	1	0.662252	179	29	13.9423
FAM179B	0	genome.wustl.edu	37	14	45432443	45432443	+	Silent	SNP	T	T	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	14	45432443	45432443	T	G	SNP	FAM179B	ENST00000361577	human	ensembl	74_37	+1	known	silent	c.819	p.S273	0.961	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FAM179B	HGNC	ENSG00000198718				133	0	0	114	31	21.3793
FKBP3	0	genome.wustl.edu	37	14	45599948	45599948	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	14	45599948	45599948	T	G	SNP	FKBP3	ENST00000216330	human	ensembl	74_37	-1	known	missense	c.164	p.N55T	1.000	NULL	pfam_PPIase_FKBP_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP3	HGNC	ENSG00000100442				38	0	0	37	4	9.7561
NID2	0	genome.wustl.edu	37	14	52520915	52520915	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	14	52520915	52520915	G	A	SNP	NID2	ENST00000216286	human	ensembl	74_37	-1	known	missense	c.892	p.R298C	0.000	NULL	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd_dom,superfamily_GFP,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EG-like_dom,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID2	HGNC	ENSG00000087303				35	0	0	40	10	20
PTGDR	0	genome.wustl.edu	37	14	52735271	52735271	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	14	52735271	52735271	C	T	SNP	PTGDR	ENST00000306051	human	ensembl	74_37	+1	known	missense	c.739	p.R247C	0.029	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Pglndn_D_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Pglndn_D_rcpt,prints_Prostanoid_rcpt	-	no_errors	PTGDR	HGNC	ENSG00000168229				53	0	0	39	4	9.30233
PELI2	0	genome.wustl.edu	37	14	56757145	56757145	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	14	56757145	56757145	A	G	SNP	PELI2	ENST00000267460	human	ensembl	74_37	+1	known	missense	c.667	p.T223A	1.000	pfam_Pellino_fam	pfam_Pellino_fam	-	no_errors	PELI2	HGNC	ENSG00000139946				110	1	0.900901	86	12	12.2449
GPR135	0	genome.wustl.edu	37	14	59930803	59930803	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	14	59930803	59930803	G	A	SNP	GPR135	ENST00000395116	human	ensembl	74_37	-1	known	missense	c.1142	p.A381V	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR135	HGNC	ENSG00000181619				41	0	0	20	4	16.6667
RTN1	0	genome.wustl.edu	37	14	60074086	60074086	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	14	60074086	60074086	G	A	SNP	RTN1	ENST00000267484	human	ensembl	74_37	-1	known	silent	c.1890	p.A630	0.018	pfam_Reticulon,pfscan_Reticulon	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN1	HGNC	ENSG00000139970				29	0	0	25	5	16.6667
SIX6	0	genome.wustl.edu	37	14	60976498	60976498	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	14	60976498	60976498	G	A	SNP	SIX6	ENST00000327720	human	ensembl	74_37	+1	known	missense	c.382	p.G128S	1.000	superfamily_Homeodomain-like,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	SIX6	HGNC	ENSG00000184302				43	0	0	25	4	13.7931
KCNH5	0	genome.wustl.edu	37	14	63417018	63417018	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	14	63417018	63417018	C	T	SNP	KCNH5	ENST00000322893	human	ensembl	74_37	-1	known	missense	c.1202	p.R401H	0.999	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_cNMP-bd_dom,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH5	HGNC	ENSG00000140015				85	0	0	89	13	12.7451
SYNE2	0	genome.wustl.edu	37	14	64518919	64518919	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	14	64518919	64518919	C	T	SNP	SYNE2	ENST00000358025	human	ensembl	74_37	+1	known	missense	c.8288	p.S2763L	0.029	smart_Spectrin/alpha-actinin	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654				161	0	0	168	18	9.67742
PLEKHG3	0	genome.wustl.edu	37	14	65208660	65208660	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	14	65208660	65208660	C	T	SNP	PLEKHG3	ENST00000394691	human	ensembl	74_37	+1	known	missense	c.2425	p.R809C	0.983	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG3	HGNC	ENSG00000126822				97	0	0	83	11	11.7021
SYNJ2BP	0	genome.wustl.edu	37	14	70855266	70855266	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	14	70855266	70855266	C	T	SNP	SYNJ2BP	ENST00000256366	human	ensembl	74_37	-1	known	missense	c.122	p.G41D	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SYNJ2BP	HGNC	ENSG00000213463				41	0	0	36	5	12.1951
RBM25	0	genome.wustl.edu	37	14	73538375	73538375	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	14	73538375	73538375	G	A	SNP	RBM25	ENST00000261973	human	ensembl	74_37	+1	known	missense	c.26	p.R9H	1.000	NULL	pfam_PWI_dom,pfam_RRM_dom,superfamily_PWI_dom,smart_RRM_dom,smart_PWI_dom,pfscan_RRM_dom	-	no_errors	RBM25	HGNC	ENSG00000119707				37	0	0	57	13	18.5714
SYNDIG1L	0	genome.wustl.edu	37	14	74874351	74874351	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	14	74874351	74874351	T	C	SNP	SYNDIG1L	ENST00000331628	human	ensembl	74_37	-1	known	missense	c.604	p.T202A	1.000	pfam_CD225/Dispanin_fam	pfam_CD225/Dispanin_fam	-	no_errors	SYNDIG1L	HGNC	ENSG00000183379				48	0	0	32	7	17.9487
NRXN3	0	genome.wustl.edu	37	14	79270111	79270111	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	14	79270111	79270111	C	T	SNP	NRXN3	ENST00000554738	human	ensembl	74_37	+1	known	silent	c.2187	p.A729	0.002	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN3	HGNC	ENSG00000021645				61	0	0	39	10	20.4082
CEP128	0	genome.wustl.edu	37	14	81251580	81251580	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	14	81251580	81251580	C	T	SNP	CEP128	ENST00000281129	human	ensembl	74_37	-1	known	missense	c.1870	p.A624T	0.983	NULL	NULL	-	no_errors	CEP128	HGNC	ENSG00000100629				116	0	0	99	14	12.3894
ZC3H14	0	genome.wustl.edu	37	14	89073629	89073629	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	14	89073629	89073629	T	A	SNP	ZC3H14	ENST00000251038	human	ensembl	74_37	+1	known	missense	c.1790	p.L597H	0.915	smart_Znf_CCCH	smart_Znf_CCCH	-	no_errors	ZC3H14	HGNC	ENSG00000100722				81	0	0	77	12	13.4831
EFCAB11	0	genome.wustl.edu	37	14	90303383	90303383	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	14	90303383	90303383	A	G	SNP	EFCAB11	ENST00000267544	human	ensembl	74_37	-1	known	missense	c.328	p.S110P	0.000	NULL	pfscan_EF_hand_dom	-	no_errors	EFCAB11	HGNC	ENSG00000140025				11	0	0	7	8	53.3333
CCDC88C	0	genome.wustl.edu	37	14	91773527	91773527	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	14	91773527	91773527	C	T	SNP	CCDC88C	ENST00000389857	human	ensembl	74_37	-1	known	missense	c.3050	p.G1017E	0.515	NULL	pfam_Hook-related_fam,superfamily_Prefoldin,superfamily_Fum_Rdtase/Succ_DH_flav-like_C	-	no_errors	CCDC88C	HGNC	ENSG00000015133				50	0	0	43	10	18.8679
SERPINA9	0	genome.wustl.edu	37	14	94936051	94936051	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	14	94936051	94936051	G	A	SNP	SERPINA9	ENST00000337425	human	ensembl	74_37	-1	known	nonsense	c.181	p.Q61*	0.000	superfamily_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINA9	HGNC	ENSG00000170054				62	0	0	52	9	14.7541
SERPINA3	0	genome.wustl.edu	37	14	95090098	95090098	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	14	95090098	95090098	G	A	SNP	SERPINA3	ENST00000393078	human	ensembl	74_37	+1	known	missense	c.1219	p.D407N	0.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINA3	HGNC	ENSG00000196136				140	0	0	135	27	16.6667
ASB7	0	genome.wustl.edu	37	15	101188577	101188577	+	Silent	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	15	101188577	101188577	T	C	SNP	ASB7	ENST00000332783	human	ensembl	74_37	+1	known	silent	c.867	p.C289	1.000	pfam_SOCS_C,smart_SOCS_C,pfscan_SOCS_C	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C,prints_Ankyrin_rpt	-	no_errors	ASB7	HGNC	ENSG00000183475				52	0	0	49	10	16.9492
GABRG3	0	genome.wustl.edu	37	15	27772702	27772702	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	15	27772702	27772702	C	T	SNP	GABRG3	ENST00000333743	human	ensembl	74_37	+1	known	missense	c.989	p.A330V	0.998	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABBAg_rcpt,prints_GABAA_rcpt,prints_GABBAg3_rcpt,prints_GABAAa_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRG3	HGNC	ENSG00000182256				46	0	0	30	5	14.2857
OCA2	0	genome.wustl.edu	37	15	28116368	28116368	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	15	28116368	28116368	C	T	SNP	OCA2	ENST00000354638	human	ensembl	74_37	-1	known	missense	c.2176	p.V726I	0.965	pfam_Cit_transptr-like_dom,pfam_Na/sul_symport,pfam_Arsenical_pump_ArsB,tigrfam_Arsenical_pump_ArsB	pfam_Cit_transptr-like_dom,pfam_Na/sul_symport,pfam_Arsenical_pump_ArsB,tigrfam_Arsenical_pump_ArsB	-	no_errors	OCA2	HGNC	ENSG00000104044				45	0	0	30	3	9.09091
RYR3	0	genome.wustl.edu	37	15	34130674	34130674	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	15	34130674	34130674	C	A	SNP	RYR3	ENST00000389232	human	ensembl	74_37	+1	known	missense	c.12493	p.L4165I	1.000	superfamily_ARM-type_fold	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838				61	0	0	66	15	18.5185
PGBD4	0	genome.wustl.edu	37	15	34396075	34396075	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	15	34396075	34396075	A	G	SNP	PGBD4	ENST00000397766	human	ensembl	74_37	+1	known	missense	c.1343	p.H448R	0.984	NULL	NULL	-	no_errors	PGBD4	HGNC	ENSG00000182405				62	0	0	84	14	14.2857
NUTM1	0	genome.wustl.edu	37	15	34646818	34646818	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	15	34646818	34646818	C	T	SNP	NUTM1	ENST00000333756	human	ensembl	74_37	+1	known	missense	c.1163	p.S388L	0.000	NULL	NULL	-	no_errors	NUTM1	HGNC	ENSG00000184507				79	0	0	63	14	18.1818
LPCAT4	0	genome.wustl.edu	37	15	34654982	34654982	+	Splice_Site	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	15	34654982	34654982	C	T	SNP	LPCAT4	ENST00000314891	human	ensembl	74_37	-1	known	splice_site	c.801+1	e8+1	1.000	-	-	-	no_errors	LPCAT4	HGNC	ENSG00000176454				59	0	0	53	6	10.1695
GOLGA8A	0	genome.wustl.edu	37	15	34673666	34673666	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	15	34673666	34673666	G	A	SNP	GOLGA8A	ENST00000432566	human	ensembl	74_37	-1	known	silent	c.1848	p.S616	0.995	NULL	NULL	-	no_errors	GOLGA8A	HGNC	ENSG00000175265				68	0	0	51	10	16.3934
AQR	0	genome.wustl.edu	37	15	35163101	35163101	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	15	35163101	35163101	A	G	SNP	AQR	ENST00000156471	human	ensembl	74_37	-1	known	missense	c.3620	p.V1207A	0.987	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	AQR	HGNC	ENSG00000021776				58	0	0	61	13	17.5676
AQR	0	genome.wustl.edu	37	15	35202476	35202476	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	15	35202476	35202476	G	A	SNP	AQR	ENST00000156471	human	ensembl	74_37	-1	known	missense	c.1523	p.A508V	1.000	NULL	superfamily_P-loop_NTPase	-	no_errors	AQR	HGNC	ENSG00000021776				42	0	0	33	5	13.1579
CSNK1A1P1	0	genome.wustl.edu	37	15	37109974	37109974	+	RNA	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	15	37109974	37109974	A	G	SNP	CSNK1A1P1	ENST00000430593	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CSNK1A1P1	HGNC	ENSG00000223518				46	0	0	48	6	11.1111
EIF2AK4	0	genome.wustl.edu	37	15	40254062	40254062	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	15	40254062	40254062	G	T	SNP	EIF2AK4	ENST00000263791	human	ensembl	74_37	+1	known	missense	c.821	p.S274I	0.003	pirsf_Ser/Thr_kinase_GCN2	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RWD-domain,superfamily_Kinase-like_dom,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Anticodon-bd,smart_RWD-domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kinase_GCN2,pfscan_RWD-domain,pfscan_Prot_kinase_dom	-	no_errors	EIF2AK4	HGNC	ENSG00000128829				89	0	0	101	12	10.6195
INO80	0	genome.wustl.edu	37	15	41379814	41379814	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	15	41379814	41379814	G	A	SNP	INO80	ENST00000361937	human	ensembl	74_37	-1	known	missense	c.604	p.R202W	0.999	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	INO80	HGNC	ENSG00000128908				118	0	0	131	19	12.6667
CYP19A1	0	genome.wustl.edu	37	15	51514600	51514600	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	15	51514600	51514600	G	A	SNP	CYP19A1	ENST00000260433	human	ensembl	74_37	-1	known	missense	c.574	p.R192C	1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP19A1	HGNC	ENSG00000137869				69	0	0	69	11	13.75
CCPG1	0	genome.wustl.edu	37	15	55652559	55652559	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	15	55652559	55652559	C	T	SNP	CCPG1	ENST00000310958	human	ensembl	74_37	-1	known	missense	c.1412	p.G471D	0.026	NULL	NULL	-	no_errors	CCPG1	HGNC	ENSG00000260916				231	1	0.431034	238	29	10.8614
PRTG	0	genome.wustl.edu	37	15	55912260	55912260	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	15	55912260	55912260	C	T	SNP	PRTG	ENST00000389286	human	ensembl	74_37	-1	known	missense	c.3403	p.D1135N	1.000	NULL	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	PRTG	HGNC	ENSG00000166450				94	0	0	99	13	11.6071
CGNL1	0	genome.wustl.edu	37	15	57731440	57731440	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	15	57731440	57731440	A	C	SNP	CGNL1	ENST00000281282	human	ensembl	74_37	+1	known	missense	c.1243	p.S415R	0.017	NULL	pfam_Myosin_tail,prints_Tropomyosin	-	no_errors	CGNL1	HGNC	ENSG00000128849				108	1	0.917431	82	12	12.766
ALDH1A2	0	genome.wustl.edu	37	15	58430696	58430696	+	RNA	SNP	T	T	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	15	58430696	58430696	T	A	SNP	ALDH1A2	ENST00000558504	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ALDH1A2	HGNC	ENSG00000128918				25	0	0	45	6	11.7647
TLN2	0	genome.wustl.edu	37	15	62950012	62950012	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	15	62950012	62950012	G	A	SNP	TLN2	ENST00000306829	human	ensembl	74_37	+1	known	missense	c.703	p.E235K	1.000	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pfam_Talin_cent,pfam_ILWEQ_dom,pfam_Vinculin-bd_dom,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ_dom,pfscan_FERM_domain,pfscan_ILWEQ_dom	-	no_errors	TLN2	HGNC	ENSG00000171914				158	0	0	155	26	14.3646
FEM1B	0	genome.wustl.edu	37	15	68582325	68582325	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	15	68582325	68582325	G	A	SNP	FEM1B	ENST00000306917	human	ensembl	74_37	+1	known	missense	c.629	p.R210H	0.972	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	FEM1B	HGNC	ENSG00000169018				55	0	0	51	8	13.5593
GRAMD2	0	genome.wustl.edu	37	15	72456008	72456008	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	15	72456008	72456008	A	G	SNP	GRAMD2	ENST00000309731	human	ensembl	74_37	-1	known	missense	c.691	p.S231P	0.000	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD2	HGNC	ENSG00000175318				44	0	0	33	7	17.5
ISLR2	0	genome.wustl.edu	37	15	74425657	74425657	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	15	74425657	74425657	G	A	SNP	ISLR2	ENST00000361742	human	ensembl	74_37	+1	known	missense	c.562	p.G188S	0.885	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Ig-like_dom	-	no_errors	ISLR2	HGNC	ENSG00000167178				97	0	0	63	16	20.2532
CYP1A1	0	genome.wustl.edu	37	15	75012940	75012940	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	15	75012940	75012940	G	A	SNP	CYP1A1	ENST00000379727	human	ensembl	74_37	-1	known	missense	c.1429	p.R477W	0.300	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP1,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	-	no_errors	CYP1A1	HGNC	ENSG00000140465				100	0	0	104	18	14.7541
PTPN9	0	genome.wustl.edu	37	15	75772249	75772249	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	15	75772249	75772249	A	G	SNP	PTPN9	ENST00000306726	human	ensembl	74_37	-1	known	missense	c.1069	p.Y357H	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_CRAL-TRIO_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_CRAL-bd_toc_tran	-	no_errors	PTPN9	HGNC	ENSG00000169410				64	0	0	62	11	15.0685
CHRNB4	0	genome.wustl.edu	37	15	78921959	78921959	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	15	78921959	78921959	G	A	SNP	CHRNB4	ENST00000261751	human	ensembl	74_37	-1	known	missense	c.688	p.R230C	0.990	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Neur_channel,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNB4	HGNC	ENSG00000117971				113	1	0.877193	77	18	18.9474
TMC3	0	genome.wustl.edu	37	15	81636296	81636296	+	Silent	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	15	81636296	81636296	A	G	SNP	TMC3	ENST00000359440	human	ensembl	74_37	-1	known	silent	c.1609	p.L537	0.810	pfam_TMC	pfam_TMC	-	no_errors	TMC3	HGNC	ENSG00000188869				75	0	0	88	14	13.7255
EFTUD1	0	genome.wustl.edu	37	15	82444608	82444608	+	Silent	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	15	82444608	82444608	A	G	SNP	EFTUD1	ENST00000268206	human	ensembl	74_37	-1	known	silent	c.2187	p.P729	0.965	superfamily_Ribosomal_S5_D2-typ_fold	pfam_EF_GTP-bd_dom,pfam_EFG_V,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_EFG_III-V,superfamily_Transl_B-barrel,smart_EFG_V,prints_EF_GTP-bd_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	EFTUD1	HGNC	ENSG00000140598				146	0	0	166	10	5.68182
ZSCAN2	0	genome.wustl.edu	37	15	85163909	85163909	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	15	85163909	85163909	G	A	SNP	ZSCAN2	ENST00000448803	human	ensembl	74_37	+1	known	silent	c.483	p.S161	0.000	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN2	HGNC	ENSG00000176371				133	0	0	115	25	17.8571
SLC28A1	0	genome.wustl.edu	37	15	85487996	85487996	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	15	85487996	85487996	A	G	SNP	SLC28A1	ENST00000286749	human	ensembl	74_37	+1	known	missense	c.1772	p.Y591C	0.481	NULL	pfam_Nucleos_tra2_C,pfam_Nuclsd_transpt2,pfam_Nucleoside_recog_Gate,tigrfam_C_nuclsd_transpt_met_bac	-	no_errors	SLC28A1	HGNC	ENSG00000156222				102	0	0	96	11	10.2804
NTRK3	0	genome.wustl.edu	37	15	88679207	88679207	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	15	88679207	88679207	T	C	SNP	NTRK3	ENST00000360948	human	ensembl	74_37	-1	known	missense	c.830	p.D277G	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,pfscan_Ig-like_dom,prints_Tyr_kinase_NGF_rcpt	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_LRR-contain_N,superfamily_Kinase-like_dom,smart_LRR-contain_N,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Tyr_kinase_NGF_rcpt,prints_Tyr_kin_neurotrophic_rcpt_3,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NTRK3	HGNC	ENSG00000140538				85	0	0	106	9	7.82609
WDR93	0	genome.wustl.edu	37	15	90286554	90286554	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	15	90286554	90286554	G	A	SNP	WDR93	ENST00000268130	human	ensembl	74_37	+1	known	missense	c.1993	p.E665K	0.000	NULL	superfamily_WD40_repeat_dom	-	no_errors	WDR93	HGNC	ENSG00000140527				54	0	0	39	8	17.0213
NR2F2	0	genome.wustl.edu	37	15	96877465	96877465	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	15	96877465	96877465	G	A	SNP	NR2F2	ENST00000394166	human	ensembl	74_37	+1	known	missense	c.603	p.M201I	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_COUP_TF,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Retinoid-X_rcpt/HNF4	-	no_errors	NR2F2	HGNC	ENSG00000185551				129	0	0	107	16	13.0081
TXNDC11	0	genome.wustl.edu	37	16	11785695	11785695	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	16	11785695	11785695	C	T	SNP	TXNDC11	ENST00000356957	human	ensembl	74_37	-1	known	missense	c.1432	p.G478R	0.028	NULL	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TXNDC11	HGNC	ENSG00000153066				57	0	0	57	10	14.9254
MKL2	0	genome.wustl.edu	37	16	14340951	14340951	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	16	14340951	14340951	C	T	SNP	MKL2	ENST00000341243	human	ensembl	74_37	+1	known	missense	c.1801	p.R601W	1.000	NULL	pfam_RPEL_repeat,pfam_SAP_dom,smart_RPEL_repeat,smart_SAP_dom,pfscan_RPEL_repeat,pfscan_SAP_dom	-	no_errors	MKL2	HGNC	ENSG00000186260				44	0	0	34	6	15
PLA2G10	0	genome.wustl.edu	37	16	14766560	14766560	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	16	14766560	14766560	C	A	SNP	PLA2G10	ENST00000438167	human	ensembl	74_37	-1	known	missense	c.402	p.Q134H	1.000	pfam_PLipase_A2_dom,superfamily_PLipase_A2_dom,smart_PLipase_A2_dom,prints_PLipase_A2	pfam_PLipase_A2_dom,superfamily_PLipase_A2_dom,smart_PLipase_A2_dom,prints_PLipase_A2	-	no_errors	PLA2G10	HGNC	ENSG00000069764				188	0	0	225	12	5.06329
NOMO1	0	genome.wustl.edu	37	16	14958558	14958558	+	Silent	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	16	14958558	14958558	A	G	SNP	NOMO1	ENST00000287667	human	ensembl	74_37	+1	known	silent	c.1512	p.S504	0.108	NULL	pfam_DUF2012,superfamily_CarboxyPept-like_regulatory,superfamily_Carb-bd-like_fold,superfamily_Collagen-bd_Cna_B-typ_dom	-	no_errors	NOMO1	HGNC	ENSG00000103512				170	0	0	164	37	18.408
KIAA0430	0	genome.wustl.edu	37	16	15704907	15704907	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	16	15704907	15704907	C	T	SNP	KIAA0430	ENST00000396368	human	ensembl	74_37	-1	known	missense	c.3676	p.V1226I	0.000	NULL	pfam_Limkain_b1_cons_dom,pfam_NYN_limkain-b1,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	KIAA0430	HGNC	ENSG00000166783				111	0	0	83	21	20.1923
MAPK8IP3	0	genome.wustl.edu	37	16	1817232	1817232	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	16	1817232	1817232	C	T	SNP	MAPK8IP3	ENST00000250894	human	ensembl	74_37	+1	known	silent	c.3168	p.Y1056	0.873	superfamily_WD40_repeat_dom	pfam_JNK/Rab-associated_protein-1_N,superfamily_WD40_repeat_dom	-	no_errors	MAPK8IP3	HGNC	ENSG00000138834				88	0	0	51	7	12.069
SPSB3	0	genome.wustl.edu	37	16	1827807	1827807	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	16	1827807	1827807	C	T	SNP	SPSB3	ENST00000301717	human	ensembl	74_37	-1	known	missense	c.662	p.G221D	0.996	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,smart_SOCS_C,pfscan_B30.2/SPRY,pfscan_SOCS_C	-	no_errors	SPSB3	HGNC	ENSG00000162032				27	0	0	14	4	22.2222
FAHD1	0	genome.wustl.edu	37	16	1877455	1877455	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	16	1877455	1877455	C	T	SNP	FAHD1	ENST00000382666	human	ensembl	74_37	+1	known	silent	c.225	p.G75	1.000	pfam_Fumarylacetoacetase_C,superfamily_Fumarylacetoacetase_C-rel	pfam_Fumarylacetoacetase_C,superfamily_Fumarylacetoacetase_C-rel	-	no_errors	FAHD1	HGNC	ENSG00000180185				33	0	0	28	2	6.66667
SCNN1G	0	genome.wustl.edu	37	16	23200704	23200704	+	Silent	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	16	23200704	23200704	T	C	SNP	SCNN1G	ENST00000300061	human	ensembl	74_37	+1	known	silent	c.330	p.V110	0.779	pfam_Na+channel_ASC,tigrfam_EnaC	pfam_Na+channel_ASC,prints_Na+channel_ASC,tigrfam_EnaC	-	no_errors	SCNN1G	HGNC	ENSG00000166828				100	0	0	85	10	10.5263
IL21R	0	genome.wustl.edu	37	16	27460161	27460161	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	16	27460161	27460161	T	G	SNP	IL21R	ENST00000337929	human	ensembl	74_37	+1	known	missense	c.1174	p.C392G	0.986	NULL	superfamily_Fibronectin_type3	-	no_errors	IL21R	HGNC	ENSG00000103522				66	0	0	53	9	14.5161
PRRT2	0	genome.wustl.edu	37	16	29825839	29825839	+	Silent	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	16	29825839	29825839	A	G	SNP	PRRT2	ENST00000567659	human	ensembl	74_37	+1	known	silent	c.1065	p.A355	0.999	NULL	pfam_CD225/Dispanin_fam	-	no_errors	PRRT2	HGNC	ENSG00000167371				19	0	0	11	4	26.6667
MVP	0	genome.wustl.edu	37	16	29842329	29842329	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	16	29842329	29842329	G	A	SNP	MVP	ENST00000357402	human	ensembl	74_37	+1	known	missense	c.256	p.A86T	0.998	NULL	pfam_Vault_N,pfam_MVP_shoulder	-	no_errors	MVP	HGNC	ENSG00000013364				26	0	0	34	4	10.5263
TBX6	0	genome.wustl.edu	37	16	30100495	30100495	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	16	30100495	30100495	G	A	SNP	TBX6	ENST00000279386	human	ensembl	74_37	-1	known	silent	c.390	p.G130	0.997	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box,prints_TF_Brachyury	-	no_errors	TBX6	HGNC	ENSG00000149922				38	0	0	27	6	18.1818
ZNF48	0	genome.wustl.edu	37	16	30409177	30409177	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	16	30409177	30409177	G	A	SNP	ZNF48	ENST00000320159	human	ensembl	74_37	+1	known	silent	c.606	p.R202	0.566	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF48	HGNC	ENSG00000180035				48	0	0	47	8	14.5455
PRSS36	0	genome.wustl.edu	37	16	31161349	31161349	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	16	31161349	31161349	C	A	SNP	PRSS36	ENST00000268281	human	ensembl	74_37	-1	known	missense	c.8	p.R3L	0.521	pirsf_Pept_S1A_polyserase-2	pirsf_Pept_S1A_polyserase-2,pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Peptidase_S1	-	no_errors	PRSS36	HGNC	ENSG00000178226				62	0	0	44	10	18.5185
NLRC3	0	genome.wustl.edu	37	16	3591887	3591887	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	16	3591887	3591887	C	T	SNP	NLRC3	ENST00000448023	human	ensembl	74_37	-1	known	missense	c.3274	p.G1092R	0.891	smart_Leu-rich_rpt_RNase_inh_sub-typ	superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase	-	no_errors	NLRC3	HGNC	ENSG00000167984				31	0	0	29	7	19.4444
CREBBP	0	genome.wustl.edu	37	16	3790455	3790455	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	16	3790455	3790455	G	A	SNP	CREBBP	ENST00000262367	human	ensembl	74_37	-1	known	nonsense	c.4078	p.R1360*	1.000	pfam_Histone_H3-K56_AcTrfase_RTT109	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CREBBP	HGNC	ENSG00000005339				64	0	0	56	5	8.19672
ABCC11	0	genome.wustl.edu	37	16	48227793	48227793	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	16	48227793	48227793	C	T	SNP	ABCC11	ENST00000356608	human	ensembl	74_37	-1	known	silent	c.2505	p.S835	0.583	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC11	HGNC	ENSG00000121270				50	0	0	47	11	18.9655
ALG1	0	genome.wustl.edu	37	16	5132575	5132575	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	16	5132575	5132575	G	C	SNP	ALG1	ENST00000262374	human	ensembl	74_37	+1	known	missense	c.1088	p.G363A	1.000	pfam_Glyco_trans_1	pfam_Glyco_trans_1	-	no_errors	ALG1	HGNC	ENSG00000033011				51	0	0	31	7	18.4211
TOX3	0	genome.wustl.edu	37	16	52484318	52484318	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	16	52484318	52484318	G	A	SNP	TOX3	ENST00000219746	human	ensembl	74_37	-1	known	silent	c.549	p.S183	0.670	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	TOX3	HGNC	ENSG00000103460				161	0	0	128	29	18.4713
MMP2	0	genome.wustl.edu	37	16	55513508	55513508	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	16	55513508	55513508	C	T	SNP	MMP2	ENST00000219070	human	ensembl	74_37	+1	known	silent	c.117	p.G39	0.850	superfamily_Peptidoglycan-bd-like	pfam_Pept_M10_metallopeptidase,pfam_FN_type2_col-bd,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Kringle-like,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_FN_type2_col-bd,smart_Hemopexin-like_repeat,pfscan_FN_type2_col-bd,prints_Pept_M10A	-	no_errors	MMP2	HGNC	ENSG00000087245				29	0	0	19	5	20.8333
CES5A	0	genome.wustl.edu	37	16	55880490	55880490	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	16	55880490	55880490	G	A	SNP	CES5A	ENST00000521992	human	ensembl	74_37	-1	known	missense	c.1688	p.P563L	0.000	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CES5A	HGNC	ENSG00000159398				247	1	0.403226	231	40	14.7601
CES5A	0	genome.wustl.edu	37	16	55893464	55893464	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	16	55893464	55893464	G	A	SNP	CES5A	ENST00000521992	human	ensembl	74_37	-1	known	missense	c.1138	p.P380S	0.171	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CES5A	HGNC	ENSG00000159398				50	0	0	26	3	10.3448
MT1E	0	genome.wustl.edu	37	16	56660687	56660687	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	16	56660687	56660687	G	T	SNP	MT1E	ENST00000330439	human	ensembl	74_37	+1	putative	missense	c.338	p.S113I	0.001	NULL	pfam_Metalthion_sfam_euk,superfamily_Metalthion_dom	-	no_errors	MT1E	HGNC	ENSG00000169715				42	0	0	25	9	26.4706
NLRC5	0	genome.wustl.edu	37	16	57054633	57054633	+	Silent	SNP	C	C	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	16	57054633	57054633	C	A	SNP	NLRC5	ENST00000262510	human	ensembl	74_37	+1	known	silent	c.9	p.P3	0.000	NULL	pfam_Leu-rich_rpt,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_NACHT_NTPase	-	no_errors	NLRC5	HGNC	ENSG00000140853				70	0	0	48	12	20
DOK4	0	genome.wustl.edu	37	16	57507884	57507884	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	16	57507884	57507884	C	T	SNP	DOK4	ENST00000340099	human	ensembl	74_37	-1	known	missense	c.667	p.V223I	1.000	pfam_Insln_rcpt_S1,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	pfam_Insln_rcpt_S1,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	-	no_errors	DOK4	HGNC	ENSG00000125170				71	0	0	42	13	23.6364
MMP15	0	genome.wustl.edu	37	16	58074522	58074522	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	16	58074522	58074522	T	C	SNP	MMP15	ENST00000219271	human	ensembl	74_37	+1	known	missense	c.830	p.M277T	1.000	pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo,prints_Pept_M10A	pirsf_Pept_M10A_Metazoans,pfam_Hemopexin-like_repeat,pfam_Pept_M10_metallopeptidase,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP15	HGNC	ENSG00000102996				73	0	0	53	7	11.6667
NHLRC4	0	genome.wustl.edu	37	16	618400	618400	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	16	618400	618400	G	A	SNP	NHLRC4	ENST00000424439	human	ensembl	74_37	+1	known	missense	c.353	p.G118D	0.004	pfscan_NHL_repeat_subgr	pfam_NHL_repeat,pfscan_NHL_repeat_subgr	-	no_errors	NHLRC4	HGNC	ENSG00000257108				18	0	0	21	5	19.2308
RANBP10	0	genome.wustl.edu	37	16	67763726	67763726	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	16	67763726	67763726	C	T	SNP	RANBP10	ENST00000317506	human	ensembl	74_37	-1	known	missense	c.1004	p.R335Q	1.000	smart_CTLH_C,pfscan_CTLH_C	pfam_SPRY_rcpt,pfam_CTLH/CRA,pfam_LisH_dimerisation_subgr,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,smart_CTLH_C,smart_CRA_dom,pfscan_B30.2/SPRY,pfscan_LisH_dimerisation,pfscan_CTLH_C	-	no_errors	RANBP10	HGNC	ENSG00000141084				115	0	0	101	10	9.00901
CIRH1A	0	genome.wustl.edu	37	16	69184536	69184536	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	16	69184536	69184536	C	T	SNP	CIRH1A	ENST00000314423	human	ensembl	74_37	+1	known	missense	c.835	p.R279W	0.998	superfamily_WD40_repeat_dom,superfamily_Quinonprotein_ADH-like_supfam,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Quinonprotein_ADH-like_supfam,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CIRH1A	HGNC	ENSG00000141076				95	0	0	97	21	17.7966
FUK	0	genome.wustl.edu	37	16	70503177	70503177	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	16	70503177	70503177	C	T	SNP	FUK	ENST00000378912	human	ensembl	74_37	+1	known	silent	c.1002	p.S334	0.000	pfam_Fucokinase	pfam_Fucokinase,pfam_GHMP_kinase_C_dom,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Trimer_LpxA-like,prints_Galkinase	-	no_errors	FUK	HGNC	ENSG00000157353				68	0	0	39	8	17.0213
ZNF23	0	genome.wustl.edu	37	16	71483393	71483393	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	16	71483393	71483393	A	G	SNP	ZNF23	ENST00000357254	human	ensembl	74_37	-1	known	missense	c.535	p.C179R	0.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF23	HGNC	ENSG00000167377				95	0	0	84	14	14.2857
PHLPP2	0	genome.wustl.edu	37	16	71712666	71712666	+	Silent	SNP	C	C	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	16	71712666	71712666	C	A	SNP	PHLPP2	ENST00000356272	human	ensembl	74_37	-1	known	silent	c.1260	p.V420	0.468	NULL	pfam_PP2C-like_dom,pfam_Leu-rich_rpt,superfamily_PP2C-like_dom,smart_Leu-rich_rpt_typical-subtyp,smart_PP2C-like_dom	-	no_errors	PHLPP2	HGNC	ENSG00000040199				51	0	0	51	10	16.3934
CHST5	0	genome.wustl.edu	37	16	75563303	75563303	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	16	75563303	75563303	T	G	SNP	CHST5	ENST00000541075	human	ensembl	74_37	-1	known	missense	c.998	p.N333T	0.977	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST5	HGNC	ENSG00000135702				83	0	0	56	9	13.8462
WWOX	0	genome.wustl.edu	37	16	78466617	78466617	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	16	78466617	78466617	T	C	SNP	WWOX	ENST00000566780	human	ensembl	74_37	+1	known	missense	c.1024	p.F342L	1.000	NULL	pfam_WW_dom,pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom,prints_Glc/ribitol_DH	-	no_errors	WWOX	HGNC	ENSG00000186153				204	2	0.970874	192	28	12.7273
BCMO1	0	genome.wustl.edu	37	16	81303868	81303868	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	16	81303868	81303868	C	T	SNP	BCMO1	ENST00000258168	human	ensembl	74_37	+1	known	silent	c.948	p.D316	0.451	pfam_Carotenoid_Oase	pfam_Carotenoid_Oase	-	no_errors	BCMO1	HGNC	ENSG00000135697				95	0	0	83	21	20.1923
TLDC1	0	genome.wustl.edu	37	16	84520637	84520637	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	16	84520637	84520637	C	T	SNP	TLDC1	ENST00000343629	human	ensembl	74_37	-1	known	nonsense	c.558	p.W186*	0.272	NULL	pfam_TLDc,smart_TLDc	-	no_errors	TLDC1	HGNC	ENSG00000140950				59	0	0	59	9	13.2353
ZCCHC14	0	genome.wustl.edu	37	16	87446254	87446254	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	16	87446254	87446254	G	T	SNP	ZCCHC14	ENST00000268616	human	ensembl	74_37	-1	known	missense	c.1662	p.S554R	0.997	NULL	pfam_SAM_type1,pfam_Znf_CCHC,superfamily_Phox,superfamily_SAM/pointed,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC14	HGNC	ENSG00000140948				71	0	0	85	12	12.3711
ABAT	0	genome.wustl.edu	37	16	8866730	8866730	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	16	8866730	8866730	G	A	SNP	ABAT	ENST00000268251	human	ensembl	74_37	+1	known	missense	c.910	p.A304T	1.000	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase,tigrfam_4NH2But_aminotransferase_euk	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase,tigrfam_4NH2But_aminotransferase_euk	-	no_errors	ABAT	HGNC	ENSG00000183044				49	0	0	45	6	11.7647
SPATA2L	0	genome.wustl.edu	37	16	89764549	89764549	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	16	89764549	89764549	G	A	SNP	SPATA2L	ENST00000289805	human	ensembl	74_37	-1	known	silent	c.468	p.F156	0.878	NULL	NULL	-	no_errors	SPATA2L	HGNC	ENSG00000158792				44	0	0	39	7	15.2174
VPS9D1	0	genome.wustl.edu	37	16	89774889	89774889	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	16	89774889	89774889	C	T	SNP	VPS9D1	ENST00000389386	human	ensembl	74_37	-1	known	missense	c.1748	p.G583D	0.813	pfam_VPS9,smart_VPS9_subgr,pfscan_VPS9	pfam_VPS9,smart_VPS9_subgr,pfscan_VPS9	-	no_errors	VPS9D1	HGNC	ENSG00000075399				20	0	0	13	4	23.5294
MC1R	0	genome.wustl.edu	37	16	89986504	89986504	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	16	89986504	89986504	T	C	SNP	MC1R	ENST00000555147	human	ensembl	74_37	+1	known	missense	c.838	p.F280L	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Melcrt_ACTH_rcpt,prints_GPCR_Rhodpsn,prints_Melancort_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_MSH_rcpt,prints_Melcrt_ACTH_rcpt,prints_GPCR_Rhodpsn,prints_Melancort_rcpt	-	no_errors	MC1R	HGNC	ENSG00000258839				69	0	0	55	18	24.6575
TVP23C	0	genome.wustl.edu	37	17	15441469	15441469	+	Splice_Site	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	17	15441469	15441469	C	T	SNP	TVP23C	ENST00000523573	human	ensembl	74_37	-1	known	splice_site	c.162-2	e5-2	0.998	-	-	-	no_errors	TVP23C	HGNC	ENSG00000175106				62	0	0	82	9	9.89011
PRPF8	0	genome.wustl.edu	37	17	1581900	1581900	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	17	1581900	1581900	G	A	SNP	PRPF8	ENST00000304992	human	ensembl	74_37	-1	known	missense	c.1766	p.T589M	1.000	pfam_PROCN,superfamily_Histone-fold	pfam_PROCN,pfam_PRP8_domainIV,pfam_Prp8_U6-snRNA-bd,pfam_PRO8NT,pfam_Prp8_U5-snRNA-bd,pfam_PROCT,pfam_RRM_spliceosomal_PrP8,pfam_JAB_MPN_dom,superfamily_Cupredoxin,superfamily_Histone-fold,smart_JAB_MPN_dom	-	no_errors	PRPF8	HGNC	ENSG00000174231				128	0	0	113	22	16.2963
NCOR1	0	genome.wustl.edu	37	17	16049688	16049688	+	Splice_Site	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	17	16049688	16049688	A	G	SNP	NCOR1	ENST00000268712	human	ensembl	74_37	-1	known	splice_site	c.1082+2	e9+2	1.000	-	-	-	no_errors	NCOR1	HGNC	ENSG00000141027				79	0	0	84	13	13.4021
TOM1L2	0	genome.wustl.edu	37	17	17754256	17754256	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	17	17754256	17754256	G	A	SNP	TOM1L2	ENST00000379504	human	ensembl	74_37	-1	known	missense	c.1289	p.A430V	1.000	pirsf_TOM1	pfam_VHS,pfam_GAT,superfamily_ENTH_VHS,smart_VHS_subgr,pirsf_TOM1,pfscan_GAT,pfscan_VHS	-	no_errors	TOM1L2	HGNC	ENSG00000175662				84	0	0	59	19	24.359
LGALS9C	0	genome.wustl.edu	37	17	18387230	18387230	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	17	18387230	18387230	C	T	SNP	LGALS9C	ENST00000328114	human	ensembl	74_37	+1	known	silent	c.81	p.D27	0.945	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl_sf,smart_Galectin_CRD	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl_sf,smart_Galectin_CRD	-	no_errors	LGALS9C	HGNC	ENSG00000171916				142	1	0.699301	117	11	8.59375
SPECC1	0	genome.wustl.edu	37	17	20108736	20108736	+	Silent	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	17	20108736	20108736	T	C	SNP	SPECC1	ENST00000261503	human	ensembl	74_37	+1	known	silent	c.1374	p.T458	0.011	NULL	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	SPECC1	HGNC	ENSG00000128487				136	0	0	155	19	10.9195
KCNJ12	0	genome.wustl.edu	37	17	21318878	21318878	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	17	21318878	21318878	G	A	SNP	KCNJ12	ENST00000331718	human	ensembl	74_37	+1	known	missense	c.224	p.C75Y	1.000	pfam_K_chnl_inward-rec_Kir,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,pfam_K_chnl_inward-rec_Kir_N,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir2.2	-	no_errors	KCNJ12	HGNC	ENSG00000184185				75	0	0	69	5	6.75676
SMG6	0	genome.wustl.edu	37	17	2203279	2203279	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	17	2203279	2203279	C	T	SNP	SMG6	ENST00000263073	human	ensembl	74_37	-1	known	silent	c.768	p.T256	0.890	NULL	pfam_EST1,smart_PIN_dom	-	no_errors	SMG6	HGNC	ENSG00000070366				60	0	0	46	12	20.6897
SLC13A2	0	genome.wustl.edu	37	17	26821104	26821104	+	Silent	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	17	26821104	26821104	A	G	SNP	SLC13A2	ENST00000444914	human	ensembl	74_37	+1	known	silent	c.1314	p.P438	0.981	pfam_Na/sul_symport	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	-	no_errors	SLC13A2	HGNC	ENSG00000007216				37	0	0	46	7	13.2075
MYO18A	0	genome.wustl.edu	37	17	27421841	27421841	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	17	27421841	27421841	T	C	SNP	MYO18A	ENST00000354329	human	ensembl	74_37	-1	known	missense	c.4537	p.T1513A	1.000	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_PDZ,superfamily_P-loop_NTPase,superfamily_PDZ,superfamily_Regulat_G_prot_signal_superfam,smart_PDZ,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_PDZ,pfscan_RecA_monomer-monomer_interface,prints_Myosin_head_motor_dom	-	no_errors	MYO18A	HGNC	ENSG00000196535				93	0	0	93	25	21.1864
MYO18A	0	genome.wustl.edu	37	17	27448201	27448201	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	17	27448201	27448201	C	T	SNP	MYO18A	ENST00000354329	human	ensembl	74_37	-1	known	missense	c.1400	p.R467Q	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_PDZ,superfamily_P-loop_NTPase,superfamily_PDZ,superfamily_Regulat_G_prot_signal_superfam,smart_PDZ,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_PDZ,pfscan_RecA_monomer-monomer_interface,prints_Myosin_head_motor_dom	-	no_errors	MYO18A	HGNC	ENSG00000196535				22	0	0	18	2	10
NF1	0	genome.wustl.edu	37	17	29677318	29677318	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	17	29677318	29677318	A	G	SNP	NF1	ENST00000358273	human	ensembl	74_37	+1	known	missense	c.7439	p.H2480R	1.000	superfamily_ARM-type_fold	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	-	no_errors	NF1	HGNC	ENSG00000196712				78	0	0	65	11	14.4737
SPACA3	0	genome.wustl.edu	37	17	31324543	31324543	+	Splice_Site	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	17	31324543	31324543	T	C	SNP	SPACA3	ENST00000269053	human	ensembl	74_37	+1	known	splice_site	c.581+2	e4+2	0.967	-	-	-	no_errors	SPACA3	HGNC	ENSG00000141316				92	0	0	95	16	14.4144
LIG3	0	genome.wustl.edu	37	17	33313055	33313055	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	17	33313055	33313055	A	G	SNP	LIG3	ENST00000378526	human	ensembl	74_37	+1	known	missense	c.596	p.Q199R	1.000	NULL	pfam_DNA_ligase_ATP-dep_cent,pfam_DNA_ligase_ATP-dep_N,pfam_Znf_PARP,pfam_DNA_ligase_ATP-dep_C,superfamily_NA-bd_OB-fold,superfamily_BRCT_dom,superfamily_DNA_ligase_ATP-dep_N,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_Znf_PARP,pfscan_DNA_ligase_ATP-dep_cent,tigrfam_DNA_ligase_ATP-dep	-	no_errors	LIG3	HGNC	ENSG00000005156				131	0	0	110	16	12.6984
FBXL20	0	genome.wustl.edu	37	17	37455302	37455302	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	17	37455302	37455302	C	T	SNP	FBXL20	ENST00000264658	human	ensembl	74_37	-1	known	silent	c.270	p.G90	0.780	smart_Leu-rich_rpt_Cys-con_subtyp	pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom	-	no_errors	FBXL20	HGNC	ENSG00000108306				101	0	0	66	9	12
MED24	0	genome.wustl.edu	37	17	38191589	38191589	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	17	38191589	38191589	C	T	SNP	MED24	ENST00000394128	human	ensembl	74_37	-1	known	missense	c.340	p.A114T	1.000	pfam_Mediator_Med24_N	pfam_Mediator_Med24_N	-	no_errors	MED24	HGNC	ENSG00000008838				27	0	0	25	6	19.3548
TOP2A	0	genome.wustl.edu	37	17	38562635	38562635	+	Splice_Site	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	17	38562635	38562635	C	T	SNP	TOP2A	ENST00000423485	human	ensembl	74_37	-1	known	splice_site	c.1953+1	e16+1	1.000	-	-	-	no_errors	TOP2A	HGNC	ENSG00000131747				34	0	0	23	4	14.8148
GAST	0	genome.wustl.edu	37	17	39871806	39871806	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	17	39871806	39871806	A	G	SNP	GAST	ENST00000329402	human	ensembl	74_37	+1	known	missense	c.118	p.R40G	0.000	pfam_Gastrin	pfam_Gastrin,smart_Gastrin	-	no_errors	GAST	HGNC	ENSG00000184502				108	0	0	74	19	20.4301
JUP	0	genome.wustl.edu	37	17	39925443	39925443	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	17	39925443	39925443	G	A	SNP	JUP	ENST00000310706	human	ensembl	74_37	-1	known	missense	c.485	p.A162V	1.000	superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,prints_Beta-catenin	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,prints_Beta-catenin	-	no_errors	JUP	HGNC	ENSG00000173801				25	0	0	25	5	16.6667
FKBP10	0	genome.wustl.edu	37	17	39975515	39975515	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	17	39975515	39975515	G	A	SNP	FKBP10	ENST00000321562	human	ensembl	74_37	+1	known	missense	c.781	p.V261M	0.905	pfscan_PPIase_FKBP_dom	pfam_PPIase_FKBP_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP10	HGNC	ENSG00000141756				85	0	0	65	14	17.7215
CNTNAP1	0	genome.wustl.edu	37	17	40849679	40849679	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	17	40849679	40849679	C	T	SNP	CNTNAP1	ENST00000264638	human	ensembl	74_37	+1	known	nonsense	c.3676	p.R1226*	1.000	pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP1	HGNC	ENSG00000108797				127	0	0	96	28	22.5806
DHX8	0	genome.wustl.edu	37	17	41570257	41570257	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	17	41570257	41570257	C	T	SNP	DHX8	ENST00000262415	human	ensembl	74_37	+1	known	missense	c.712	p.R238W	0.998	NULL	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_NA-bd_OB-fold,smart_RNA-binding_domain_S1,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX8	HGNC	ENSG00000067596				165	0	0	159	27	14.5161
PYY	0	genome.wustl.edu	37	17	42030346	42030346	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	17	42030346	42030346	G	A	SNP	PYY	ENST00000360085	human	ensembl	74_37	-1	known	missense	c.272	p.S91L	0.295	NULL	pfam_Pancreatic_hormone-like,smart_Pancreatic_hormone-like,pfscan_Pancreatic_hormone-like,prints_Pancreatic_hormone-like	-	no_errors	PYY	HGNC	ENSG00000131096				33	0	0	23	6	20.6897
KPNB1	0	genome.wustl.edu	37	17	45734321	45734321	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	17	45734321	45734321	G	A	SNP	KPNB1	ENST00000290158	human	ensembl	74_37	+1	known	nonsense	c.378	p.W126*	1.000	superfamily_ARM-type_fold	pfam_HEAT,pfam_Importin-beta_N,pfam_Armadillo,superfamily_ARM-type_fold,smart_Importin-beta_N,smart_Armadillo,pfscan_HEAT_type_2,pfscan_Importin-beta_N	-	no_errors	KPNB1	HGNC	ENSG00000108424				50	0	0	47	5	9.61538
DLX3	0	genome.wustl.edu	37	17	48070879	48070879	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	17	48070879	48070879	G	A	SNP	DLX3	ENST00000434704	human	ensembl	74_37	-1	known	missense	c.401	p.T134M	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Distal-less_N,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	DLX3	HGNC	ENSG00000064195				22	0	0	18	6	25
GP1BA	0	genome.wustl.edu	37	17	4836563	4836563	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	17	4836563	4836563	C	A	SNP	GP1BA	ENST00000329125	human	ensembl	74_37	+1	known	missense	c.664	p.P222T	0.284	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	GP1BA	HGNC	ENSG00000185245				81	0	0	79	7	8.13953
MMD	0	genome.wustl.edu	37	17	53488653	53488653	+	Silent	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	17	53488653	53488653	T	C	SNP	MMD	ENST00000262065	human	ensembl	74_37	-1	known	silent	c.234	p.V78	0.981	pfam_HlyIII-related,tigrfam_HylIII	pfam_HlyIII-related,tigrfam_HylIII	-	no_errors	MMD	HGNC	ENSG00000108960				54	0	0	67	10	12.987
TRIM37	0	genome.wustl.edu	37	17	57093004	57093004	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	17	57093004	57093004	G	A	SNP	TRIM37	ENST00000262294	human	ensembl	74_37	-1	known	missense	c.2543	p.A848V	0.166	NULL	pfam_Znf_B-box,pfam_MATH,superfamily_TRAF-like,smart_Znf_B-box,smart_Bbox_C,smart_MATH,pfscan_MATH,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM37	HGNC	ENSG00000108395				166	0	0	156	17	9.82659
TBX2	0	genome.wustl.edu	37	17	59479301	59479301	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	17	59479301	59479301	A	G	SNP	TBX2	ENST00000240328	human	ensembl	74_37	+1	novel	missense	c.652	p.K218E	1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box,prints_TF_Brachyury	-	no_errors	TBX2	HGNC	ENSG00000121068				41	0	0	41	5	10.8696
INTS2	0	genome.wustl.edu	37	17	59989018	59989018	+	Silent	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	17	59989018	59989018	A	G	SNP	INTS2	ENST00000444766	human	ensembl	74_37	-1	known	silent	c.841	p.L281	1.000	NULL	NULL	-	no_errors	INTS2	HGNC	ENSG00000108506				37	0	0	34	3	8.10811
TBC1D3P2	0	genome.wustl.edu	37	17	60342186	60342186	+	RNA	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	17	60342186	60342186	T	C	SNP	TBC1D3P2	ENST00000581291	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.062	-	-	-	no_errors	TBC1D3P2	HGNC	ENSG00000188755				14	0	0	11	3	21.4286
CSH1	0	genome.wustl.edu	37	17	61972426	61972426	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	17	61972426	61972426	G	A	SNP	CSH1	ENST00000316193	human	ensembl	74_37	-1	known	missense	c.610	p.R204C	1.000	pfam_Somatotropin,superfamily_4_helix_cytokine-like_core,prints_Somatotropin	pfam_Somatotropin,superfamily_4_helix_cytokine-like_core,prints_Somatotropin	-	no_errors	CSH1	HGNC	ENSG00000136488				102	0	0	78	13	14.2857
AIPL1	0	genome.wustl.edu	37	17	6328975	6328975	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	17	6328975	6328975	C	T	SNP	AIPL1	ENST00000381129	human	ensembl	74_37	-1	known	silent	c.960	p.R320	1.000	NULL	pfam_PPIase_FKBP_dom,smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	AIPL1	HGNC	ENSG00000129221				37	0	0	28	5	15.1515
ASGR1	0	genome.wustl.edu	37	17	7077743	7077743	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	17	7077743	7077743	A	G	SNP	ASGR1	ENST00000269299	human	ensembl	74_37	-1	known	missense	c.392	p.V131A	0.996	pfam_Lectin_N	pfam_Lectin_N,pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	ASGR1	HGNC	ENSG00000141505				22	0	0	9	5	35.7143
NEURL4	0	genome.wustl.edu	37	17	7230998	7230998	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	17	7230998	7230998	C	T	SNP	NEURL4	ENST00000399464	human	ensembl	74_37	-1	known	missense	c.488	p.R163H	1.000	superfamily_ConA-like_lec_gl_sf,smart_Neu_Z,pfscan_Neu_Z	pfam_Neu_Z,superfamily_ConA-like_lec_gl_sf,smart_Neu_Z,pfscan_Neu_Z	-	no_errors	NEURL4	HGNC	ENSG00000215041				76	0	0	56	7	11.1111
NXN	0	genome.wustl.edu	37	17	725693	725693	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	17	725693	725693	G	A	SNP	NXN	ENST00000336868	human	ensembl	74_37	-1	known	missense	c.617	p.P206L	1.000	pfam_AhpC/TSA,pfam_Redoxin,superfamily_Thioredoxin-like_fold	pfam_AhpC/TSA,pfam_Redoxin,superfamily_Thioredoxin-like_fold	-	no_errors	NXN	HGNC	ENSG00000167693				29	0	0	25	4	13.7931
UNC13D	0	genome.wustl.edu	37	17	73836367	73836367	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	17	73836367	73836367	C	T	SNP	UNC13D	ENST00000412096	human	ensembl	74_37	-1	known	missense	c.797	p.R266H	0.999	superfamily_C2_dom	pfam_C2_dom,pfam_Munc13_subgr_dom-2,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	UNC13D	HGNC	ENSG00000092929				33	0	0	19	12	38.7097
TP53	0	genome.wustl.edu	37	17	7577121	7577121	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	17	7577121	7577121	G	A	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.817	p.R273C	0.830	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				33	0	0	30	6	16.6667
DNAH17	0	genome.wustl.edu	37	17	76475713	76475713	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	17	76475713	76475713	C	T	SNP	DNAH17	ENST00000389840	human	ensembl	74_37	-1	known	missense	c.7712	p.R2571H	1.000	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_HR1_rho-bd	-	no_errors	DNAH17	HGNC	ENSG00000187775				90	0	0	65	9	12.1622
CCDC40	0	genome.wustl.edu	37	17	78013825	78013825	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	17	78013825	78013825	C	T	SNP	CCDC40	ENST00000397545	human	ensembl	74_37	+1	known	missense	c.308	p.P103L	0.000	NULL	pfam_E3_ubiquit_lig_BRE1	-	no_errors	CCDC40	HGNC	ENSG00000141519				82	0	0	82	16	16.3265
RNF213	0	genome.wustl.edu	37	17	78268635	78268635	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	17	78268635	78268635	G	A	SNP	RNF213	ENST00000582970	human	ensembl	74_37	+1	known	missense	c.1588	p.A530T	0.009	NULL	superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821				66	0	0	75	15	16.6667
NPTX1	0	genome.wustl.edu	37	17	78447193	78447193	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	17	78447193	78447193	C	T	SNP	NPTX1	ENST00000306773	human	ensembl	74_37	-1	known	missense	c.704	p.R235Q	1.000	pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin	pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,prints_Pentaxin	-	no_errors	NPTX1	HGNC	ENSG00000171246				144	1	0.689655	138	21	13.2075
HGS	0	genome.wustl.edu	37	17	79667727	79667727	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	17	79667727	79667727	C	T	SNP	HGS	ENST00000329138	human	ensembl	74_37	+1	known	silent	c.2019	p.N673	0.970	pirsf_Ubi-bd_Hrs_VPS27	pfam_VHS,pfam_HRS_helical,pfam_Znf_FYVE,superfamily_ENTH_VHS,superfamily_Znf_FYVE_PHD,smart_VHS_subgr,smart_Znf_FYVE,pirsf_Ubi-bd_Hrs_VPS27,pfscan_Ubiquitin-int_motif,pfscan_VHS,pfscan_Znf_FYVE-rel	-	no_errors	HGS	HGNC	ENSG00000185359				17	0	0	25	4	13.7931
PCYT2	0	genome.wustl.edu	37	17	79865653	79865653	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	17	79865653	79865653	C	G	SNP	PCYT2	ENST00000538721	human	ensembl	74_37	-1	known	missense	c.488	p.S163T	0.999	NULL	pfam_Cyt_trans-like,tigrfam_Cyt_trans-like	-	no_errors	PCYT2	HGNC	ENSG00000185813				32	0	0	38	8	17.3913
NTN1	0	genome.wustl.edu	37	17	9066235	9066235	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	17	9066235	9066235	C	T	SNP	NTN1	ENST00000173229	human	ensembl	74_37	+1	known	missense	c.1124	p.T375I	0.998	pfam_EGF_laminin,smart_EGF_laminin	pfam_Laminin_N,pfam_Netrin_module_non-TIMP,pfam_EGF_laminin,superfamily_TIMP-like_OB-fold,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_Netrin_module_non-TIMP,pfscan_EGF_laminin,pfscan_Laminin_N,pfscan_Netrin_domain	-	no_errors	NTN1	HGNC	ENSG00000065320				18	0	0	12	3	20
RBBP8	0	genome.wustl.edu	37	18	20516850	20516850	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	18	20516850	20516850	C	A	SNP	RBBP8	ENST00000327155	human	ensembl	74_37	+1	known	missense	c.36	p.N12K	0.963	NULL	pfam_CtIP_N,pfam_DNA-repair_Sae2/CtIP	-	no_errors	RBBP8	HGNC	ENSG00000101773				132	0	0	143	26	15.3846
CDH2	0	genome.wustl.edu	37	18	25532148	25532148	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	18	25532148	25532148	A	T	SNP	CDH2	ENST00000269141	human	ensembl	74_37	-1	known	missense	c.2690	p.L897H	0.999	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Cadherin/Desmocollin	-	no_errors	CDH2	HGNC	ENSG00000170558				114	0	0	95	17	15.1786
ASXL3	0	genome.wustl.edu	37	18	31318982	31318982	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	18	31318982	31318982	A	C	SNP	ASXL3	ENST00000269197	human	ensembl	74_37	+1	known	missense	c.1614	p.E538D	0.999	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL3	HGNC	ENSG00000141431				54	0	0	57	7	10.9375
MYOM1	0	genome.wustl.edu	37	18	3215000	3215000	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	18	3215000	3215000	C	T	SNP	MYOM1	ENST00000356443	human	ensembl	74_37	-1	known	silent	c.222	p.S74	0.000	NULL	pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYOM1	HGNC	ENSG00000101605				32	0	0	22	4	15.3846
EPG5	0	genome.wustl.edu	37	18	43497754	43497754	+	Silent	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	18	43497754	43497754	T	C	SNP	EPG5	ENST00000282041	human	ensembl	74_37	-1	known	silent	c.3129	p.P1043	0.013	NULL	NULL	-	no_errors	EPG5	HGNC	ENSG00000152223				101	0	0	99	18	15.3846
TCEB3B	0	genome.wustl.edu	37	18	44560001	44560001	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	18	44560001	44560001	G	A	SNP	TCEB3B	ENST00000332567	human	ensembl	74_37	-1	known	silent	c.1635	p.S545	0.000	pfam_RNA_pol_II_trans_fac_SIII_A	pfam_RNA_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub	-	no_errors	TCEB3B	HGNC	ENSG00000206181				89	0	0	76	18	19.1489
MYO5B	0	genome.wustl.edu	37	18	47488638	47488638	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	18	47488638	47488638	T	C	SNP	MYO5B	ENST00000285039	human	ensembl	74_37	-1	known	missense	c.1543	p.K515E	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5B	HGNC	ENSG00000167306				93	0	0	113	12	9.6
DCC	0	genome.wustl.edu	37	18	50866217	50866217	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	18	50866217	50866217	C	A	SNP	DCC	ENST00000442544	human	ensembl	74_37	+1	known	missense	c.2299	p.P767T	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DCC	HGNC	ENSG00000187323				52	0	0	66	10	13.1579
C18orf54	0	genome.wustl.edu	37	18	51888064	51888064	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	18	51888064	51888064	G	C	SNP	C18orf54	ENST00000300091	human	ensembl	74_37	+1	known	missense	c.335	p.R112T	0.211	NULL	NULL	-	no_errors	C18orf54	HGNC	ENSG00000166845				42	0	0	45	9	16.6667
ALPK2	0	genome.wustl.edu	37	18	56203863	56203863	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	18	56203863	56203863	G	A	SNP	ALPK2	ENST00000361673	human	ensembl	74_37	-1	known	missense	c.3556	p.R1186C	0.001	NULL	pfam_MHCK_EF2_kinase,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase,pfscan_Ig-like_dom	-	no_errors	ALPK2	HGNC	ENSG00000198796				108	0	0	99	13	11.6071
MC4R	0	genome.wustl.edu	37	18	58038752	58038752	+	Silent	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	18	58038752	58038752	A	G	SNP	MC4R	ENST00000299766	human	ensembl	74_37	-1	known	silent	c.831	p.C277	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Melcrt_ACTH_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Melcrt_ACTH_rcpt,prints_Mcort_rcpt_4,prints_GPCR_Rhodpsn,prints_Melancort_rcpt,prints_Cnbnoid_rcpt	-	no_errors	MC4R	HGNC	ENSG00000166603				117	0	0	94	18	16.0714
PIGN	0	genome.wustl.edu	37	18	59742043	59742043	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	18	59742043	59742043	A	G	SNP	PIGN	ENST00000357637	human	ensembl	74_37	-1	known	missense	c.2588	p.I863T	1.000	pfam_GPI_EtnP_transferase_1_C	pfam_GPI_EtnP_transferase_1_C,pfam_Phosphodiest/P_Trfase,pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	PIGN	HGNC	ENSG00000197563				37	0	0	47	9	16.0714
TSHZ1	0	genome.wustl.edu	37	18	72998236	72998236	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	18	72998236	72998236	C	T	SNP	TSHZ1	ENST00000580243	human	ensembl	74_37	+1	known	missense	c.874	p.R292C	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ1	HGNC	ENSG00000179981				68	0	0	65	6	8.4507
SMIM21	0	genome.wustl.edu	37	18	73122769	73122769	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	18	73122769	73122769	G	A	SNP	SMIM21	ENST00000382638	human	ensembl	74_37	-1	putative	silent	c.225	p.C75	0.000	NULL	NULL	-	no_errors	SMIM21	HGNC	ENSG00000206026				51	0	0	48	6	11.1111
SALL3	0	genome.wustl.edu	37	18	76757273	76757273	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	18	76757273	76757273	G	A	SNP	SALL3	ENST00000537592	human	ensembl	74_37	+1	known	missense	c.3854	p.R1285H	0.985	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL3	HGNC	ENSG00000256463				156	1	0.636943	115	28	19.5804
RBFA	0	genome.wustl.edu	37	18	77805925	77805925	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	18	77805925	77805925	G	A	SNP	RBFA	ENST00000306735	human	ensembl	74_37	+1	known	missense	c.802	p.V268M	0.000	NULL	pfam_Ribosome-bd_facA,superfamily_Ribosome-bd_facA_dom	-	no_errors	RBFA	HGNC	ENSG00000101546				57	0	0	40	5	11.1111
COL5A3	0	genome.wustl.edu	37	19	10071325	10071325	+	Splice_Site	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	10071325	10071325	A	G	SNP	COL5A3	ENST00000264828	human	ensembl	74_37	-1	known	splice_site	c.5091+2	e66+2	1.000	-	-	-	no_errors	COL5A3	HGNC	ENSG00000080573				63	0	0	64	21	24.7059
PPAN-P2RY11	0	genome.wustl.edu	37	19	10220665	10220665	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	10220665	10220665	C	A	SNP	PPAN-P2RY11	ENST00000393796	human	ensembl	74_37	+1	known	missense	c.667	p.R223S	1.000	pfam_Brix,superfamily_Anticodon-bd,smart_Brix,pfscan_Brix	pfam_Brix,pfam_GPCR_Rhodpsn,superfamily_Anticodon-bd,smart_Brix,prints_GPCR_Rhodpsn,pfscan_Brix,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	PPAN-P2RY11	HGNC	ENSG00000243207				74	0	0	48	9	15.7895
CDC37	0	genome.wustl.edu	37	19	10503997	10503997	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	10503997	10503997	G	A	SNP	CDC37	ENST00000222005	human	ensembl	74_37	-1	known	missense	c.847	p.R283C	1.000	NULL	pfam_Cdc37_Hsp90-bd,pfam_Cdc37_N_dom,pfam_Cdc37_C	-	no_errors	CDC37	HGNC	ENSG00000105401				40	0	0	31	5	13.8889
SLC44A2	0	genome.wustl.edu	37	19	10738420	10738420	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	10738420	10738420	T	C	SNP	SLC44A2	ENST00000335757	human	ensembl	74_37	+1	known	missense	c.109	p.C37R	1.000	NULL	pfam_Choline_transptr-like	-	no_errors	SLC44A2	HGNC	ENSG00000129353				109	0	0	91	11	10.7843
ELAVL3	0	genome.wustl.edu	37	19	11577547	11577547	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	11577547	11577547	G	A	SNP	ELAVL3	ENST00000359227	human	ensembl	74_37	-1	known	silent	c.105	p.D35	0.977	NULL	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA,tigrfam_ELAD_HUD_SF	-	no_errors	ELAVL3	HGNC	ENSG00000196361				59	0	0	42	6	12.5
ZNF44	0	genome.wustl.edu	37	19	12384634	12384634	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	12384634	12384634	A	G	SNP	ZNF44	ENST00000393337	human	ensembl	74_37	-1	known	missense	c.580	p.C194R	0.992	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF44	HGNC	ENSG00000197857				76	0	0	90	14	13.4615
ZNF490	0	genome.wustl.edu	37	19	12721453	12721453	+	Silent	SNP	G	G	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	12721453	12721453	G	T	SNP	ZNF490	ENST00000311437	human	ensembl	74_37	-1	known	silent	c.42	p.P14	0.002	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF490	HGNC	ENSG00000188033				73	0	0	96	12	11.1111
ASNA1	0	genome.wustl.edu	37	19	12856282	12856282	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	12856282	12856282	A	C	SNP	ASNA1	ENST00000357332	human	ensembl	74_37	+1	known	missense	c.401	p.E134A	1.000	pfam_Anion-transp_ATPase-like_dom,pfam_CobQ/CobB/MinD/ParA_Nub-bd_dom,superfamily_P-loop_NTPase,tigrfam_ATPase_ArsA/GET3	pfam_Anion-transp_ATPase-like_dom,pfam_CobQ/CobB/MinD/ParA_Nub-bd_dom,superfamily_P-loop_NTPase,tigrfam_ATPase_ArsA/GET3	-	no_errors	ASNA1	HGNC	ENSG00000198356				43	0	0	51	6	10.5263
MAST1	0	genome.wustl.edu	37	19	12984646	12984646	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	12984646	12984646	G	A	SNP	MAST1	ENST00000251472	human	ensembl	74_37	+1	known	silent	c.3675	p.T1225	0.949	NULL	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_dom	-	no_errors	MAST1	HGNC	ENSG00000105613				10	0	0	4	4	50
EFNA2	0	genome.wustl.edu	37	19	1298589	1298589	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	1298589	1298589	G	A	SNP	EFNA2	ENST00000215368	human	ensembl	74_37	+1	known	missense	c.494	p.R165Q	0.995	pfam_Ephrin,superfamily_Cupredoxin	pfam_Ephrin,superfamily_Cupredoxin,prints_Ephrin	-	no_errors	EFNA2	HGNC	ENSG00000099617				33	0	0	29	6	17.1429
RPS15	0	genome.wustl.edu	37	19	1438451	1438451	+	Silent	SNP	C	C	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	1438451	1438451	C	G	SNP	RPS15	ENST00000592623	human	ensembl	74_37	+1	known	silent	c.27	p.V9	0.000	NULL	NULL	-	no_errors	RPS15	HGNC	ENSG00000115268				34	0	0	19	4	17.3913
EMR2	0	genome.wustl.edu	37	19	14863294	14863294	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	14863294	14863294	G	A	SNP	EMR2	ENST00000392962	human	ensembl	74_37	-1	known	missense	c.1090	p.R364C	0.001	NULL	pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,prints_GPCR_2_CD97	-	no_errors	EMR2	HGNC	ENSG00000127507				38	0	0	21	11	34.375
OR10H1	0	genome.wustl.edu	37	19	15918305	15918305	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	15918305	15918305	C	T	SNP	OR10H1	ENST00000334920	human	ensembl	74_37	-1	known	silent	c.543	p.V181	0.013	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10H1	HGNC	ENSG00000186723				74	0	0	83	14	14.433
GTPBP3	0	genome.wustl.edu	37	19	17450245	17450245	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	17450245	17450245	C	T	SNP	GTPBP3	ENST00000358792	human	ensembl	74_37	+1	known	missense	c.907	p.R303W	1.000	pfam_GTP_binding_domain,superfamily_P-loop_NTPase,tigrfam_Small_GTP-bd_dom	pfam_GTP-bd_TrmE_N,pfam_GTP_binding_domain,superfamily_P-loop_NTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	GTPBP3	HGNC	ENSG00000130299				53	0	0	47	9	16.0714
KCNN1	0	genome.wustl.edu	37	19	18085948	18085948	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	18085948	18085948	G	A	SNP	KCNN1	ENST00000222249	human	ensembl	74_37	+1	known	silent	c.450	p.T150	0.008	pfam_K_chnl_Ca-activ_SK	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_2pore_dom_K_chnl_dom,superfamily_CaM-bd_dom,prints_K_chnl_Ca-activ_SK	-	no_errors	KCNN1	HGNC	ENSG00000105642				56	0	0	65	8	10.9589
MAST3	0	genome.wustl.edu	37	19	18242839	18242839	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	18242839	18242839	G	A	SNP	MAST3	ENST00000262811	human	ensembl	74_37	+1	known	missense	c.1466	p.R489H	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_dom	-	no_errors	MAST3	HGNC	ENSG00000099308				57	0	0	43	4	8.51064
ELL	0	genome.wustl.edu	37	19	18557202	18557202	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	18557202	18557202	C	T	SNP	ELL	ENST00000262809	human	ensembl	74_37	-1	known	missense	c.1621	p.A541T	1.000	pfam_Occludin_RNApol2_elong_fac_ELL	pfam_RNA_pol_II_elong_fac_ELL,pfam_Occludin_RNApol2_elong_fac_ELL	-	no_errors	ELL	HGNC	ENSG00000105656				16	0	0	21	2	8.69565
SUGP2	0	genome.wustl.edu	37	19	19136411	19136411	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	19136411	19136411	T	A	SNP	SUGP2	ENST00000337018	human	ensembl	74_37	-1	known	missense	c.746	p.N249I	0.145	NULL	pfam_Surp,pfam_G_patch_dom,superfamily_Surp,smart_Surp,smart_G_patch_dom,pfscan_Surp,pfscan_G_patch_dom	-	no_errors	SUGP2	HGNC	ENSG00000064607				137	0	0	140	24	14.6341
NCAN	0	genome.wustl.edu	37	19	19329855	19329855	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	19329855	19329855	G	A	SNP	NCAN	ENST00000252575	human	ensembl	74_37	+1	known	missense	c.205	p.A69T	0.000	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Link,pfam_C-type_lectin,pfam_Sushi_SCR_CCP,pfam_Ig_V-set,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Link,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link,prints_AntifreezeII	-	no_errors	NCAN	HGNC	ENSG00000130287				28	0	0	25	8	24.2424
BTBD2	0	genome.wustl.edu	37	19	1986617	1986617	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	1986617	1986617	A	G	SNP	BTBD2	ENST00000255608	human	ensembl	74_37	-1	known	missense	c.1448	p.L483P	1.000	pfam_PHR	pfam_PHR,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD2	HGNC	ENSG00000133243				51	0	0	32	11	25.5814
BTBD2	0	genome.wustl.edu	37	19	1986916	1986916	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	1986916	1986916	G	A	SNP	BTBD2	ENST00000255608	human	ensembl	74_37	-1	known	silent	c.1329	p.D443	0.862	pfam_PHR	pfam_PHR,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD2	HGNC	ENSG00000133243				46	0	0	45	4	8.16327
ZNF724P	0	genome.wustl.edu	37	19	23406271	23406271	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	23406271	23406271	C	T	SNP	ZNF724P	ENST00000418100	human	ensembl	74_37	-1	novel	missense	c.776	p.C259Y	0.998	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF724P	HGNC	ENSG00000196081				22	0	0	21	5	19.2308
TMPRSS9	0	genome.wustl.edu	37	19	2422198	2422198	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	2422198	2422198	C	T	SNP	TMPRSS9	ENST00000332578	human	ensembl	74_37	+1	known	missense	c.2399	p.T800M	0.000	pirsf_Pept_S1A_polyserase-1	pirsf_Pept_S1A_polyserase-1,pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,pfam_LDrepeatLR_classA_rpt,superfamily_Trypsin-like_Pept_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1	-	no_errors	TMPRSS9	HGNC	ENSG00000178297				97	0	0	87	11	11.2245
ZNF57	0	genome.wustl.edu	37	19	2917178	2917178	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	2917178	2917178	G	A	SNP	ZNF57	ENST00000306908	human	ensembl	74_37	+1	known	missense	c.559	p.G187R	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF57	HGNC	ENSG00000171970				72	0	0	72	14	16.2791
TLE2	0	genome.wustl.edu	37	19	3028785	3028785	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	3028785	3028785	C	T	SNP	TLE2	ENST00000262953	human	ensembl	74_37	-1	known	missense	c.41	p.G14D	1.000	pfam_Groucho/TLE_N	pfam_Groucho/TLE_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_Groucho_enhance,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TLE2	HGNC	ENSG00000065717				58	0	0	42	4	8.69565
RHPN2	0	genome.wustl.edu	37	19	33535190	33535190	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	33535190	33535190	G	A	SNP	RHPN2	ENST00000254260	human	ensembl	74_37	-1	known	silent	c.150	p.A50	0.891	pfam_HR1_rho-bd,superfamily_HR1_rho-bd,smart_HR1_rho-bd	pfam_BRO1_dom,pfam_HR1_rho-bd,superfamily_HR1_rho-bd,superfamily_PDZ,smart_HR1_rho-bd,smart_PDZ,pfscan_BRO1_dom	-	no_errors	RHPN2	HGNC	ENSG00000131941				79	0	0	81	10	10.989
GPI	0	genome.wustl.edu	37	19	34868778	34868778	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	34868778	34868778	G	A	SNP	GPI	ENST00000415930	human	ensembl	74_37	+1	known	missense	c.658	p.A220T	1.000	pfam_G6P_Isomerase	pfam_G6P_Isomerase,prints_G6P_Isomerase	-	no_errors	GPI	HGNC	ENSG00000105220				62	0	0	57	11	16.1765
ZNF599	0	genome.wustl.edu	37	19	35251100	35251100	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	35251100	35251100	C	T	SNP	ZNF599	ENST00000329285	human	ensembl	74_37	-1	known	silent	c.606	p.T202	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF599	HGNC	ENSG00000153896				163	0	0	152	30	16.4835
ZNF829	0	genome.wustl.edu	37	19	37406110	37406110	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	37406110	37406110	C	T	SNP	ZNF829	ENST00000520965	human	ensembl	74_37	-1	known	missense	c.203	p.S68N	0.678	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF829	HGNC	ENSG00000185869				48	0	0	40	11	21.5686
SIPA1L3	0	genome.wustl.edu	37	19	38572218	38572218	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	38572218	38572218	C	T	SNP	SIPA1L3	ENST00000222345	human	ensembl	74_37	+1	known	missense	c.13	p.R5W	1.000	NULL	pfam_DUF3401,pfam_Rap_GAP_dom,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L3	HGNC	ENSG00000105738				42	0	0	31	6	16.2162
RYR1	0	genome.wustl.edu	37	19	38939370	38939370	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	38939370	38939370	G	A	SNP	RYR1	ENST00000359596	human	ensembl	74_37	+1	known	missense	c.1039	p.V347M	1.000	pfam_MIR_motif,superfamily_MIR_motif,smart_MIR_motif	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218				56	0	0	49	7	12.5
RYR1	0	genome.wustl.edu	37	19	38948733	38948733	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	38948733	38948733	G	A	SNP	RYR1	ENST00000359596	human	ensembl	74_37	+1	known	silent	c.1968	p.T656	0.632	pfscan_B30.2/SPRY	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218				73	0	0	65	11	14.4737
ATCAY	0	genome.wustl.edu	37	19	3907777	3907777	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	3907777	3907777	C	T	SNP	ATCAY	ENST00000301260	human	ensembl	74_37	+1	known	missense	c.404	p.A135V	0.981	pfam_Bcl2-/adenovirus-E1B	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	ATCAY	HGNC	ENSG00000167654				23	0	0	14	9	39.1304
LGALS7B	0	genome.wustl.edu	37	19	39281340	39281340	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	39281340	39281340	A	C	SNP	LGALS7B	ENST00000314980	human	ensembl	74_37	+1	known	missense	c.107	p.N36T	1.000	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl_sf,smart_Galectin_CRD	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl_sf,smart_Galectin_CRD	-	no_errors	LGALS7B	HGNC	ENSG00000178934				34	0	0	31	3	8.82353
IFNL2	0	genome.wustl.edu	37	19	39760138	39760138	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	39760138	39760138	G	A	SNP	IFNL2	ENST00000331982	human	ensembl	74_37	+1	known	missense	c.281	p.R94H	0.997	NULL	NULL	-	no_errors	IFNL2	HGNC	ENSG00000183709				45	0	0	32	5	13.5135
EEF2	0	genome.wustl.edu	37	19	3979947	3979947	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	3979947	3979947	G	A	SNP	EEF2	ENST00000309311	human	ensembl	74_37	-1	known	silent	c.1464	p.F488	0.435	superfamily_Transl_B-barrel	pfam_EF_GTP-bd_dom,pfam_Transl_elong_EFG/EF2_IV,pfam_EFG_V,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Transl_B-barrel,superfamily_EFG_III-V,smart_Transl_elong_EFG/EF2_IV,smart_EFG_V,prints_EF_GTP-bd_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	EEF2	HGNC	ENSG00000167658				41	0	0	38	2	5
TIMM50	0	genome.wustl.edu	37	19	39976416	39976416	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	39976416	39976416	T	C	SNP	TIMM50	ENST00000314349	human	ensembl	74_37	+1	known	missense	c.770	p.L257P	1.000	pfam_NIF,superfamily_HAD-like_dom,smart_NIF,pfscan_NIF	pfam_NIF,superfamily_HAD-like_dom,smart_NIF,pfscan_NIF	-	no_errors	TIMM50	HGNC	ENSG00000105197				61	0	0	51	8	13.5593
ZNF780B	0	genome.wustl.edu	37	19	40542152	40542152	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	40542152	40542152	T	C	SNP	ZNF780B	ENST00000434248	human	ensembl	74_37	-1	known	missense	c.614	p.H205R	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF780B	HGNC	ENSG00000128000				67	0	0	73	14	16.092
MAP3K10	0	genome.wustl.edu	37	19	40712004	40712004	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	40712004	40712004	T	G	SNP	MAP3K10	ENST00000253055	human	ensembl	74_37	+1	known	missense	c.1375	p.F459V	1.000	pirsf_MAPKKK9/10/11	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_dom	-	no_errors	MAP3K10	HGNC	ENSG00000130758				17	0	0	11	4	26.6667
LTBP4	0	genome.wustl.edu	37	19	41111033	41111033	+	Silent	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	41111033	41111033	T	C	SNP	LTBP4	ENST00000308370	human	ensembl	74_37	+1	known	silent	c.544	p.L182	0.996	NULL	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	LTBP4	HGNC	ENSG00000090006				22	0	0	20	3	13.0435
ZNF574	0	genome.wustl.edu	37	19	42585199	42585199	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	42585199	42585199	G	A	SNP	ZNF574	ENST00000222339	human	ensembl	74_37	+1	known	missense	c.2711	p.R904H	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF574	HGNC	ENSG00000105732				66	0	0	47	8	14.5455
SH3GL1	0	genome.wustl.edu	37	19	4365543	4365543	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	4365543	4365543	C	T	SNP	SH3GL1	ENST00000269886	human	ensembl	74_37	-1	known	silent	c.267	p.S89	0.436	pfam_BAR_dom,smart_BAR_dom,pfscan_BAR_dom	pfam_BAR_dom,pfam_SH3_domain,pfam_BAR_dom-cont,pfam_SH3_2,superfamily_SH3_domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox	-	no_errors	SH3GL1	HGNC	ENSG00000141985				53	0	0	34	26	43.3333
XRCC1	0	genome.wustl.edu	37	19	44058886	44058886	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	44058886	44058886	C	T	SNP	XRCC1	ENST00000262887	human	ensembl	74_37	-1	known	missense	c.326	p.R109H	1.000	pfam_Xrcc1_N,superfamily_Galactose-bd-like	pfam_Xrcc1_N,pfam_BRCT_dom,superfamily_Galactose-bd-like,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	XRCC1	HGNC	ENSG00000073050				189	0	0	143	28	16.3743
ZNF233	0	genome.wustl.edu	37	19	44778796	44778796	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	44778796	44778796	G	A	SNP	ZNF233	ENST00000391958	human	ensembl	74_37	+1	known	silent	c.1983	p.S661	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF233	HGNC	ENSG00000159915				80	0	0	88	14	13.7255
PLIN4	0	genome.wustl.edu	37	19	4512549	4512549	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	4512549	4512549	C	T	SNP	PLIN4	ENST00000301286	human	ensembl	74_37	-1	novel	missense	c.1381	p.G461S	0.005	superfamily_Ankyrin_rpt-contain_dom	pfam_Perilipin,superfamily_Ankyrin_rpt-contain_dom	-	no_errors	PLIN4	HGNC	ENSG00000167676				174	0	0	140	16	10.2564
SIX5	0	genome.wustl.edu	37	19	46270344	46270344	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	46270344	46270344	C	T	SNP	SIX5	ENST00000317578	human	ensembl	74_37	-1	known	silent	c.873	p.A291	0.921	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	SIX5	HGNC	ENSG00000177045				16	0	0	7	3	30
CRX	0	genome.wustl.edu	37	19	48339652	48339652	+	Splice_Site	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	48339652	48339652	G	A	SNP	CRX	ENST00000221996	human	ensembl	74_37	+1	known	splice_site	c.252+1	e2+1	1.000	-	-	-	no_errors	CRX	HGNC	ENSG00000105392				41	0	0	31	3	8.82353
DHDH	0	genome.wustl.edu	37	19	49442913	49442913	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	49442913	49442913	C	T	SNP	DHDH	ENST00000221403	human	ensembl	74_37	+1	known	nonsense	c.574	p.Q192*	1.000	NULL	pfam_Oxidoreductase_N	-	no_errors	DHDH	HGNC	ENSG00000104808				59	0	0	92	15	14.0187
TSKS	0	genome.wustl.edu	37	19	50265373	50265373	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	50265373	50265373	G	A	SNP	TSKS	ENST00000246801	human	ensembl	74_37	-1	known	missense	c.287	p.T96M	0.938	NULL	NULL	-	no_errors	TSKS	HGNC	ENSG00000126467				43	0	0	27	4	12.9032
FUZ	0	genome.wustl.edu	37	19	50314683	50314683	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	50314683	50314683	C	T	SNP	FUZ	ENST00000313777	human	ensembl	74_37	-1	known	silent	c.429	p.E143	0.999	NULL	NULL	-	no_errors	FUZ	HGNC	ENSG00000010361				34	0	0	29	5	14.7059
VRK3	0	genome.wustl.edu	37	19	50482394	50482394	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	50482394	50482394	C	T	SNP	VRK3	ENST00000316763	human	ensembl	74_37	-1	known	missense	c.1382	p.R461H	0.000	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	VRK3	HGNC	ENSG00000105053				63	0	0	45	6	11.7647
NAPSA	0	genome.wustl.edu	37	19	50861861	50861861	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	50861861	50861861	G	A	SNP	NAPSA	ENST00000253719	human	ensembl	74_37	-1	known	silent	c.1212	p.R404	0.000	NULL	pfam_Aspartic_peptidase,superfamily_Peptidase_aspartic_dom,prints_Aspartic_peptidase	-	no_errors	NAPSA	HGNC	ENSG00000131400				8	0	0	18	5	21.7391
KLK4	0	genome.wustl.edu	37	19	51410327	51410327	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	51410327	51410327	G	C	SNP	KLK4	ENST00000324041	human	ensembl	74_37	-1	known	missense	c.628	p.P210A	0.984	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	KLK4	HGNC	ENSG00000167749				43	0	0	42	12	22.2222
KLK8	0	genome.wustl.edu	37	19	51503767	51503767	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	51503767	51503767	G	A	SNP	KLK8	ENST00000391806	human	ensembl	74_37	-1	known	missense	c.278	p.A93V	0.009	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	KLK8	HGNC	ENSG00000129455				66	0	0	56	6	9.67742
FPR1	0	genome.wustl.edu	37	19	52249649	52249649	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	52249649	52249649	A	G	SNP	FPR1	ENST00000304748	human	ensembl	74_37	-1	known	missense	c.599	p.V200A	0.016	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Formyl_pep_rcpt,prints_Anphylx_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Formyl_pep_rcpt,prints_GPCR_Rhodpsn,prints_Anphylx_rcpt	-	no_errors	FPR1	HGNC	ENSG00000171051				104	1	0.952381	79	17	17.7083
ZNF808	0	genome.wustl.edu	37	19	53056872	53056872	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	53056872	53056872	G	A	SNP	ZNF808	ENST00000359798	human	ensembl	74_37	+1	known	missense	c.703	p.E235K	0.002	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF808	HGNC	ENSG00000198482				185	0	0	176	18	9.27835
ZNF611	0	genome.wustl.edu	37	19	53217351	53217351	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	53217351	53217351	G	A	SNP	ZNF611	ENST00000319783	human	ensembl	74_37	-1	known	missense	c.107	p.A36V	0.402	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF611	HGNC	ENSG00000213020				159	0	0	144	22	13.253
VN1R2	0	genome.wustl.edu	37	19	53762612	53762612	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	53762612	53762612	C	T	SNP	VN1R2	ENST00000341702	human	ensembl	74_37	+1	known	silent	c.984	p.Y328	0.000	pfam_Vmron_rcpt_1,pfam_GPCR_Rhodpsn,pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_7TM	pfam_Vmron_rcpt_1,pfam_GPCR_Rhodpsn,pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_7TM,prints_Vmron_rcpt_1	-	no_errors	VN1R2	HGNC	ENSG00000196131				160	0	0	148	23	13.4503
VN1R2	0	genome.wustl.edu	37	19	53762736	53762736	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	53762736	53762736	C	A	SNP	VN1R2	ENST00000341702	human	ensembl	74_37	+1	known	missense	c.1108	p.R370S	0.000	pfam_Vmron_rcpt_1,prints_Vmron_rcpt_1	pfam_Vmron_rcpt_1,pfam_GPCR_Rhodpsn,pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_7TM,prints_Vmron_rcpt_1	-	no_errors	VN1R2	HGNC	ENSG00000196131				129	0	0	124	18	12.6761
LILRB5	0	genome.wustl.edu	37	19	54758702	54758702	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	54758702	54758702	G	A	SNP	LILRB5	ENST00000450632	human	ensembl	74_37	-1	known	missense	c.1124	p.P375L	0.585	smart_Ig_sub,smart_Ig_sub2	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LILRB5	HGNC	ENSG00000105609				89	0	0	66	8	10.8108
KIR2DL3	0	genome.wustl.edu	37	19	55253679	55253679	+	Silent	SNP	C	C	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	55253679	55253679	C	A	SNP	KIR2DL3	ENST00000434419	human	ensembl	74_37	+1	known	silent	c.324	p.P108	0.000	smart_Ig_sub	pfam_Immunoglobulin,smart_Ig_sub	-	no_errors	KIR2DL3	HGNC	ENSG00000243772				168	0	0	144	15	9.43396
TMEM190	0	genome.wustl.edu	37	19	55889219	55889219	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	55889219	55889219	C	T	SNP	TMEM190	ENST00000291934	human	ensembl	74_37	+1	known	silent	c.270	p.G90	0.997	NULL	superfamily_P_trefoil	-	no_errors	TMEM190	HGNC	ENSG00000160472				28	0	0	21	8	27.5862
NLRP9	0	genome.wustl.edu	37	19	56244332	56244332	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	56244332	56244332	G	A	SNP	NLRP9	ENST00000332836	human	ensembl	74_37	-1	known	missense	c.865	p.H289Y	0.000	pfscan_NACHT_NTPase	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP9	HGNC	ENSG00000185792				65	0	0	72	9	11.1111
ZNF548	0	genome.wustl.edu	37	19	57910578	57910578	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	57910578	57910578	C	T	SNP	ZNF548	ENST00000336128	human	ensembl	74_37	+1	known	missense	c.959	p.P320L	0.987	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF548	HGNC	ENSG00000188785				94	0	0	99	8	7.47664
ZNF274	0	genome.wustl.edu	37	19	58723003	58723003	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	58723003	58723003	C	T	SNP	ZNF274	ENST00000326804	human	ensembl	74_37	+1	known	silent	c.927	p.T309	0.000	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Krueppel-associated_box,pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF274	HGNC	ENSG00000171606				95	0	0	81	13	13.8298
ZNF324	0	genome.wustl.edu	37	19	58980632	58980632	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	58980632	58980632	G	A	SNP	ZNF324	ENST00000196482	human	ensembl	74_37	+1	known	missense	c.80	p.R27H	0.979	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF324	HGNC	ENSG00000083812				69	0	0	53	4	7.01754
EMR1	0	genome.wustl.edu	37	19	6924780	6924780	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	6924780	6924780	G	A	SNP	EMR1	ENST00000312053	human	ensembl	74_37	+1	known	missense	c.1883	p.R628H	0.028	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_EMR1_rcpt,prints_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfam_EGF-like_Ca-bd_dom,pfam_GPS_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_EMR1_rcpt,prints_GPCR_2_secretin-like	-	no_errors	EMR1	HGNC	ENSG00000174837				84	0	0	59	7	10.6061
ZNF358	0	genome.wustl.edu	37	19	7585134	7585134	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	7585134	7585134	C	T	SNP	ZNF358	ENST00000394341	human	ensembl	74_37	+1	known	missense	c.1006	p.H336Y	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF358	HGNC	ENSG00000198816				86	0	0	62	6	8.82353
TRAPPC5	0	genome.wustl.edu	37	19	7747603	7747603	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	7747603	7747603	G	A	SNP	TRAPPC5	ENST00000317378	human	ensembl	74_37	+1	known	missense	c.464	p.G155D	1.000	pfam_TRAPP_component,superfamily_NO_sig/Golgi_transp_ligand-bd,pirsf_TRAPP-I_su5	pfam_TRAPP_component,superfamily_NO_sig/Golgi_transp_ligand-bd,pirsf_TRAPP-I_su5	-	no_errors	TRAPPC5	HGNC	ENSG00000181029				19	0	0	16	2	11.1111
FCER2	0	genome.wustl.edu	37	19	7755350	7755350	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	7755350	7755350	C	T	SNP	FCER2	ENST00000346664	human	ensembl	74_37	-1	known	missense	c.563	p.R188Q	0.052	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_AntifreezeII,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_AntifreezeII,pfscan_C-type_lectin	-	no_errors	FCER2	HGNC	ENSG00000104921				53	0	0	30	9	23.0769
LRRC8E	0	genome.wustl.edu	37	19	7965621	7965621	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	7965621	7965621	G	A	SNP	LRRC8E	ENST00000306708	human	ensembl	74_37	+1	known	silent	c.2214	p.S738	0.037	smart_Leu-rich_rpt_typical-subtyp	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8E	HGNC	ENSG00000171017				46	0	0	34	4	10.5263
HNRNPM	0	genome.wustl.edu	37	19	8550540	8550540	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	8550540	8550540	C	T	SNP	HNRNPM	ENST00000325495	human	ensembl	74_37	+1	known	missense	c.1228	p.R410C	1.000	NULL	pfam_RRM_dom,pfam_HnRNP_M_PY-NLS,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPM	HGNC	ENSG00000099783				117	0	0	91	13	12.5
MED16	0	genome.wustl.edu	37	19	873579	873579	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	873579	873579	A	G	SNP	MED16	ENST00000325464	human	ensembl	74_37	-1	known	missense	c.1775	p.I592T	1.000	pfam_Mediator_Med16	pfam_Mediator_Med16,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	MED16	HGNC	ENSG00000175221				50	0	0	58	9	13.4328
MBD3L1	0	genome.wustl.edu	37	19	8953580	8953580	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	8953580	8953580	G	A	SNP	MBD3L1	ENST00000305625	human	ensembl	74_37	+1	known	missense	c.226	p.A76T	0.993	NULL	NULL	-	no_errors	MBD3L1	HGNC	ENSG00000170948				55	0	0	47	10	17.5439
MUC16	0	genome.wustl.edu	37	19	9047875	9047875	+	Silent	SNP	A	A	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	9047875	9047875	A	C	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	silent	c.33756	p.T11252	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				55	0	0	50	11	18.0328
MUC16	0	genome.wustl.edu	37	19	9061285	9061285	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	9061285	9061285	A	C	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.26161	p.S8721A	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				84	0	0	84	15	15.1515
MUC16	0	genome.wustl.edu	37	19	9085145	9085145	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	9085145	9085145	C	T	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.6670	p.A2224T	0.248	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				63	0	0	52	6	10.3448
TBC1D8	0	genome.wustl.edu	37	2	101624428	101624428	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	101624428	101624428	A	G	SNP	TBC1D8	ENST00000409318	human	ensembl	74_37	-1	known	missense	c.3323	p.L1108P	1.000	NULL	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D8	HGNC	ENSG00000204634				81	0	0	103	13	11.2069
GCC2	0	genome.wustl.edu	37	2	109088197	109088197	+	Silent	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	109088197	109088197	T	C	SNP	GCC2	ENST00000309863	human	ensembl	74_37	+1	known	silent	c.2412	p.R804	0.048	NULL	pfam_GRIP,superfamily_GRIP,superfamily_tRNA-bd_arm,smart_GRIP,pfscan_GRIP	-	no_errors	GCC2	HGNC	ENSG00000135968				94	0	0	79	19	19.3878
GCC2	0	genome.wustl.edu	37	2	109111808	109111808	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	109111808	109111808	G	A	SNP	GCC2	ENST00000309863	human	ensembl	74_37	+1	known	silent	c.4509	p.P1503	0.027	NULL	pfam_GRIP,superfamily_GRIP,superfamily_tRNA-bd_arm,smart_GRIP,pfscan_GRIP	-	no_errors	GCC2	HGNC	ENSG00000135968				33	0	0	42	4	8.69565
RANBP2	0	genome.wustl.edu	37	2	109380502	109380502	+	Silent	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	109380502	109380502	T	C	SNP	RANBP2	ENST00000283195	human	ensembl	74_37	+1	known	silent	c.3507	p.G1169	0.832	NULL	pfam_Ran_bind_dom,pfam_Znf_RanBP2,pfam_IR1-M,pfam_Cyclophilin-like_PPIase_dom,pfam_TPR_1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,smart_Ran_bind_dom,smart_Znf_RanBP2,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RanBP2,pfscan_Cyclophilin-like_PPIase_dom,pfscan_Ran_bind_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	RANBP2	HGNC	ENSG00000153201				150	0	0	131	27	17.0886
CCDC93	0	genome.wustl.edu	37	2	118764370	118764370	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	118764370	118764370	C	T	SNP	CCDC93	ENST00000376300	human	ensembl	74_37	-1	known	missense	c.179	p.C60Y	1.000	pfam_DUF2037	pfam_DUF2037	-	no_errors	CCDC93	HGNC	ENSG00000125633				53	0	0	59	9	13.2353
GLI2	0	genome.wustl.edu	37	2	121747109	121747109	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	121747109	121747109	C	T	SNP	GLI2	ENST00000361492	human	ensembl	74_37	+1	known	missense	c.3619	p.P1207S	0.020	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI2	HGNC	ENSG00000074047				15	0	0	8	3	27.2727
LCT	0	genome.wustl.edu	37	2	136566593	136566593	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	136566593	136566593	G	A	SNP	LCT	ENST00000264162	human	ensembl	74_37	-1	known	silent	c.3324	p.Y1108	0.110	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	LCT	HGNC	ENSG00000115850				78	0	0	76	7	8.43373
MCM6	0	genome.wustl.edu	37	2	136614442	136614442	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	136614442	136614442	G	A	SNP	MCM6	ENST00000264156	human	ensembl	74_37	-1	known	silent	c.1482	p.N494	1.000	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,superfamily_NA-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM6,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM6	HGNC	ENSG00000076003				49	0	0	47	9	16.0714
LRP1B	0	genome.wustl.edu	37	2	141130589	141130589	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	141130589	141130589	T	G	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.10756	p.S3586R	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				102	0	0	87	16	15.534
LRP1B	0	genome.wustl.edu	37	2	141272329	141272329	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	141272329	141272329	G	T	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.8162	p.S2721Y	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				47	0	0	51	11	17.7419
MBD5	0	genome.wustl.edu	37	2	149247765	149247765	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	149247765	149247765	C	T	SNP	MBD5	ENST00000407073	human	ensembl	74_37	+1	known	missense	c.3865	p.H1289Y	1.000	NULL	superfamily_DNA-bd_dom,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd,pfscan_PWWP_dom	-	no_errors	MBD5	HGNC	ENSG00000204406				85	0	0	84	11	11.5789
RIF1	0	genome.wustl.edu	37	2	152320331	152320331	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	152320331	152320331	G	T	SNP	RIF1	ENST00000243326	human	ensembl	74_37	+1	known	missense	c.4297	p.D1433Y	1.000	NULL	pfam_Rif1_N,superfamily_ARM-type_fold	-	no_errors	RIF1	HGNC	ENSG00000080345				94	0	0	94	18	16.0714
NBAS	0	genome.wustl.edu	37	2	15307258	15307258	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	15307258	15307258	C	T	SNP	NBAS	ENST00000281513	human	ensembl	74_37	-1	known	missense	c.7030	p.G2344R	0.999	NULL	pfam_Sec39,superfamily_Quino_amine_DH_bsu	-	no_errors	NBAS	HGNC	ENSG00000151779				28	0	0	44	4	8.33333
FMNL2	0	genome.wustl.edu	37	2	153471416	153471416	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	153471416	153471416	C	A	SNP	FMNL2	ENST00000288670	human	ensembl	74_37	+1	known	missense	c.1114	p.L372M	1.000	pfam_FH3_dom,superfamily_ARM-type_fold	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,smart_FH2_Formin,prints_Wilms_tumour	-	no_errors	FMNL2	HGNC	ENSG00000157827				85	0	0	93	16	14.6789
RPRM	0	genome.wustl.edu	37	2	154334842	154334842	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	154334842	154334842	G	A	SNP	RPRM	ENST00000325926	human	ensembl	74_37	-1	known	silent	c.238	p.L80	1.000	NULL	NULL	-	no_errors	RPRM	HGNC	ENSG00000177519				64	0	0	48	8	14.2857
GALNT13	0	genome.wustl.edu	37	2	155252628	155252628	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	155252628	155252628	T	C	SNP	GALNT13	ENST00000409237	human	ensembl	74_37	+1	known	missense	c.1282	p.Y428H	1.000	superfamily_Ricin_B_lectin,smart_Ricin_B_lectin	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT13	HGNC	ENSG00000144278				51	0	0	63	12	16
TANC1	0	genome.wustl.edu	37	2	159922470	159922470	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	159922470	159922470	C	T	SNP	TANC1	ENST00000263635	human	ensembl	74_37	+1	known	silent	c.48	p.G16	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC1	HGNC	ENSG00000115183				88	0	0	91	12	11.6505
TTC21B	0	genome.wustl.edu	37	2	166747442	166747442	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	166747442	166747442	C	T	SNP	TTC21B	ENST00000243344	human	ensembl	74_37	-1	known	missense	c.3007	p.E1003K	1.000	pfscan_TPR-contain_dom	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC21B	HGNC	ENSG00000123607				50	0	0	42	7	14.2857
SCN9A	0	genome.wustl.edu	37	2	167133718	167133718	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	167133718	167133718	G	A	SNP	SCN9A	ENST00000303354	human	ensembl	74_37	-1	known	silent	c.2652	p.V884	0.046	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN9A	HGNC	ENSG00000169432				181	0	0	178	25	12.3153
CHRNA1	0	genome.wustl.edu	37	2	175618367	175618367	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	175618367	175618367	G	A	SNP	CHRNA1	ENST00000261007	human	ensembl	74_37	-1	known	silent	c.717	p.P239	0.942	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel	-	no_errors	CHRNA1	HGNC	ENSG00000138435				71	0	0	42	6	12.5
OSBPL6	0	genome.wustl.edu	37	2	179247806	179247806	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	179247806	179247806	G	A	SNP	OSBPL6	ENST00000315022	human	ensembl	74_37	+1	known	silent	c.1689	p.L563	0.998	NULL	pfam_Oxysterol-bd,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL6	HGNC	ENSG00000079156				77	0	0	74	8	9.7561
TTN	0	genome.wustl.edu	37	2	179645895	179645895	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	179645895	179645895	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.3476	p.R1159H	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				77	0	0	73	17	18.8889
MSGN1	0	genome.wustl.edu	37	2	17998310	17998310	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	17998310	17998310	C	T	SNP	MSGN1	ENST00000281047	human	ensembl	74_37	+1	known	silent	c.525	p.I175	1.000	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MSGN1	HGNC	ENSG00000151379				65	0	0	45	8	15.0943
NT5C1B	0	genome.wustl.edu	37	2	18764262	18764262	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	18764262	18764262	G	A	SNP	NT5C1B	ENST00000359846	human	ensembl	74_37	-1	known	missense	c.1073	p.A358V	1.000	pfam_5-nucleotidase	pfam_5-nucleotidase	-	no_errors	NT5C1B	HGNC	ENSG00000185013				38	0	0	41	7	14.5833
WDR75	0	genome.wustl.edu	37	2	190329974	190329974	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	190329974	190329974	C	T	SNP	WDR75	ENST00000314761	human	ensembl	74_37	+1	known	missense	c.1283	p.T428I	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR75	HGNC	ENSG00000115368				40	0	0	43	6	12.2449
CASP8	0	genome.wustl.edu	37	2	202123107	202123107	+	Splice_Site	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	202123107	202123107	T	C	SNP	CASP8	ENST00000358485	human	ensembl	74_37	+1	known	splice_site	c.151+2	e1+2	1.000	-	-	-	no_errors	CASP8	HGNC	ENSG00000064012				45	0	0	51	7	12.069
WDR12	0	genome.wustl.edu	37	2	203745590	203745590	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	203745590	203745590	C	T	SNP	WDR12	ENST00000261015	human	ensembl	74_37	-1	known	missense	c.1265	p.G422E	1.000	pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_NLE,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR12	HGNC	ENSG00000138442				23	0	0	37	7	15.9091
SDC1	0	genome.wustl.edu	37	2	20403769	20403769	+	Silent	SNP	C	C	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	20403769	20403769	C	A	SNP	SDC1	ENST00000254351	human	ensembl	74_37	-1	known	silent	c.432	p.T144	0.024	pfam_Syndecan/Neurexin_dom	pfam_Syndecan/Neurexin_dom,smart_Neurexin-like	-	no_errors	SDC1	HGNC	ENSG00000115884				45	0	0	54	5	8.47458
PIKFYVE	0	genome.wustl.edu	37	2	209198113	209198113	+	Silent	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	209198113	209198113	T	C	SNP	PIKFYVE	ENST00000264380	human	ensembl	74_37	+1	known	silent	c.4038	p.Y1346	1.000	NULL	pfam_PInositol-4-P-5-kinase_core,pfam_Cpn60/TCP-1,pfam_DEP_dom,pfam_Znf_FYVE,superfamily_GroEL-like_apical_dom,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,smart_DEP_dom,smart_PInositol-4P-5-kinase_core_sub,pfscan_DEP_dom,pfscan_Znf_FYVE-rel	-	no_errors	PIKFYVE	HGNC	ENSG00000115020				62	0	0	55	7	11.2903
MAP2	0	genome.wustl.edu	37	2	210560646	210560646	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	210560646	210560646	G	A	SNP	MAP2	ENST00000360351	human	ensembl	74_37	+1	known	missense	c.3752	p.R1251H	1.000	pfam_MAP2_projctn	pfam_MAP2_projctn,pfam_MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018				72	0	0	84	19	18.4466
UNC80	0	genome.wustl.edu	37	2	210658554	210658554	+	Silent	SNP	T	T	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	210658554	210658554	T	G	SNP	UNC80	ENST00000439458	human	ensembl	74_37	+1	known	silent	c.909	p.T303	0.988	NULL	NULL	-	no_errors	UNC80	HGNC	ENSG00000144406				79	0	0	60	9	13.0435
ERBB4	0	genome.wustl.edu	37	2	212251610	212251610	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	212251610	212251610	T	C	SNP	ERBB4	ENST00000342788	human	ensembl	74_37	-1	known	missense	c.3449	p.Y1150C	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB4	HGNC	ENSG00000178568				74	0	0	63	13	17.1053
ABCA12	0	genome.wustl.edu	37	2	215823125	215823125	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	215823125	215823125	G	A	SNP	ABCA12	ENST00000272895	human	ensembl	74_37	-1	known	missense	c.5993	p.S1998F	1.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA12	HGNC	ENSG00000144452				66	0	0	77	12	13.4831
FN1	0	genome.wustl.edu	37	2	216236932	216236932	+	Silent	SNP	C	C	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	216236932	216236932	C	A	SNP	FN1	ENST00000354785	human	ensembl	74_37	-1	known	silent	c.6414	p.G2138	1.000	NULL	pfam_Fibronectin_type3,pfam_Fibronectin_type1,pfam_FN_type2_col-bd,superfamily_Kringle-like,superfamily_Fibronectin_type3,smart_Fibronectin_type1,smart_FN_type2_col-bd,smart_Fibronectin_type3,pfscan_Fibronectin_type1,pfscan_FN_type2_col-bd,pfscan_Fibronectin_type3	-	no_errors	FN1	HGNC	ENSG00000115414				82	0	0	75	12	13.7931
FN1	0	genome.wustl.edu	37	2	216249629	216249629	+	Silent	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	216249629	216249629	A	G	SNP	FN1	ENST00000354785	human	ensembl	74_37	-1	known	silent	c.4683	p.A1561	0.043	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibronectin_type1,pfam_FN_type2_col-bd,superfamily_Kringle-like,superfamily_Fibronectin_type3,smart_Fibronectin_type1,smart_FN_type2_col-bd,smart_Fibronectin_type3,pfscan_Fibronectin_type1,pfscan_FN_type2_col-bd,pfscan_Fibronectin_type3	-	no_errors	FN1	HGNC	ENSG00000115414				61	0	0	65	11	14.4737
TMEM169	0	genome.wustl.edu	37	2	216960851	216960851	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	216960851	216960851	C	T	SNP	TMEM169	ENST00000295658	human	ensembl	74_37	+1	known	silent	c.165	p.Y55	1.000	NULL	NULL	-	no_errors	TMEM169	HGNC	ENSG00000163449				71	0	0	72	9	11.1111
XRCC5	0	genome.wustl.edu	37	2	216992311	216992311	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	216992311	216992311	T	A	SNP	XRCC5	ENST00000392132	human	ensembl	74_37	+1	known	missense	c.851	p.L284Q	0.162	pfam_Ku70/Ku80_beta-barrel_dom,superfamily_SPOC_like_C_dom	pfam_Ku_N,pfam_Ku_PK_bind,pfam_Ku70/Ku80_beta-barrel_dom,pfam_Ku_C,superfamily_SPOC_like_C_dom,superfamily_Ku_PK_bind,smart_VWF_A,smart_Ku70/Ku80_beta-barrel_dom	-	no_errors	XRCC5	HGNC	ENSG00000079246				53	0	0	64	7	9.85915
NHEJ1	0	genome.wustl.edu	37	2	219941148	219941148	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	219941148	219941148	C	T	SNP	NHEJ1	ENST00000409720	human	ensembl	74_37	-1	known	missense	c.845	p.S282N	1.000	NULL	pfam_XLF/Cernunnos	-	no_errors	NHEJ1	HGNC	ENSG00000187736				67	0	0	75	11	12.7907
PAX3	0	genome.wustl.edu	37	2	223086050	223086050	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	223086050	223086050	C	T	SNP	PAX3	ENST00000392069	human	ensembl	74_37	-1	known	silent	c.849	p.L283	1.000	superfamily_Homeodomain-like	pfam_Paired_dom,pfam_Pax7,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Paired_dom,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX3	HGNC	ENSG00000135903				164	0	0	154	21	12
ARMC9	0	genome.wustl.edu	37	2	232156155	232156155	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	232156155	232156155	C	T	SNP	ARMC9	ENST00000349938	human	ensembl	74_37	+1	known	silent	c.1716	p.S572	0.730	superfamily_ARM-type_fold	superfamily_ARM-type_fold,smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	ARMC9	HGNC	ENSG00000135931				122	0	0	143	22	13.3333
ECEL1	0	genome.wustl.edu	37	2	233348873	233348873	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	233348873	233348873	C	T	SNP	ECEL1	ENST00000304546	human	ensembl	74_37	-1	known	silent	c.1245	p.P415	0.004	pfam_Peptidase_M13_N	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	ECEL1	HGNC	ENSG00000171551				34	0	0	20	4	16.6667
AGAP1	0	genome.wustl.edu	37	2	236817445	236817445	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	236817445	236817445	G	A	SNP	AGAP1	ENST00000304032	human	ensembl	74_37	+1	known	missense	c.1219	p.G407R	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_ArfGAP,pfam_MIRO-like,pfam_Small_GTPase,pfam_Ankyrin_rpt,pfam_Pleckstrin_homology,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP,prints_Small_GTPase	-	no_errors	AGAP1	HGNC	ENSG00000157985				76	0	0	63	6	8.69565
ACKR3	0	genome.wustl.edu	37	2	237489221	237489221	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	237489221	237489221	C	T	SNP	ACKR3	ENST00000272928	human	ensembl	74_37	+1	known	missense	c.113	p.P38L	0.995	prints_Chemokine_CXCR7	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_CXCR7,prints_GPCR_Rhodpsn,prints_ATII_rcpt,prints_Formyl_pep_rcpt	-	no_errors	ACKR3	HGNC	ENSG00000144476				39	0	0	40	3	6.97674
COL6A3	0	genome.wustl.edu	37	2	238262045	238262045	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	238262045	238262045	C	T	SNP	COL6A3	ENST00000295550	human	ensembl	74_37	-1	known	missense	c.6629	p.G2210D	1.000	NULL	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359				27	0	0	25	5	16.6667
LRRFIP1	0	genome.wustl.edu	37	2	238668757	238668757	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	238668757	238668757	C	T	SNP	LRRFIP1	ENST00000392000	human	ensembl	74_37	+1	known	silent	c.798	p.S266	0.000	pfam_Leu-rich_rep_flightless-int_pr	pfam_Leu-rich_rep_flightless-int_pr	-	no_errors	LRRFIP1	HGNC	ENSG00000124831				114	0	0	108	17	13.6
PER2	0	genome.wustl.edu	37	2	239162026	239162026	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	239162026	239162026	C	T	SNP	PER2	ENST00000254657	human	ensembl	74_37	-1	known	missense	c.2638	p.A880T	0.000	NULL	pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,superfamily_PAS,smart_PAS,pfscan_PAS	-	no_errors	PER2	HGNC	ENSG00000132326				31	0	0	26	6	18.75
MYEOV2	0	genome.wustl.edu	37	2	241066248	241066248	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	241066248	241066248	G	A	SNP	MYEOV2	ENST00000307266	human	ensembl	74_37	-1	known	missense	c.491	p.P164L	0.000	NULL	NULL	-	no_errors	MYEOV2	HGNC	ENSG00000172428				132	1	0.75188	141	19	11.875
C2orf44	0	genome.wustl.edu	37	2	24260710	24260710	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	24260710	24260710	T	C	SNP	C2orf44	ENST00000295148	human	ensembl	74_37	-1	known	missense	c.1655	p.K552R	1.000	NULL	NULL	-	no_errors	C2orf44	HGNC	ENSG00000163026				73	0	0	87	18	17.1429
C2orf16	0	genome.wustl.edu	37	2	27805111	27805111	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	27805111	27805111	T	C	SNP	C2orf16	ENST00000408964	human	ensembl	74_37	+1	known	missense	c.5672	p.M1891T	0.000	NULL	NULL	-	no_errors	C2orf16	HGNC	ENSG00000221843				113	0	0	131	21	13.8158
VIT	0	genome.wustl.edu	37	2	37041497	37041497	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	37041497	37041497	G	T	SNP	VIT	ENST00000379242	human	ensembl	74_37	+1	known	missense	c.2075	p.R692L	1.000	NULL	pfam_VWF_A,pfam_LCCL,superfamily_LCCL,smart_LCCL,smart_VWF_A,pfscan_LCCL,pfscan_VWF_A	-	no_errors	VIT	HGNC	ENSG00000205221				61	0	0	66	5	7.04225
ALLC	0	genome.wustl.edu	37	2	3744990	3744990	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	3744990	3744990	G	A	SNP	ALLC	ENST00000252505	human	ensembl	74_37	+1	known	missense	c.794	p.R265Q	0.920	pfam_Allantoicase_dom,superfamily_Galactose-bd-like,tigrfam_Allantoicase	pfam_Allantoicase_dom,superfamily_Galactose-bd-like,tigrfam_Allantoicase	-	no_errors	ALLC	HGNC	ENSG00000151360				126	0	0	116	13	10.0775
SLC8A1	0	genome.wustl.edu	37	2	40657163	40657163	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	40657163	40657163	G	A	SNP	SLC8A1	ENST00000332839	human	ensembl	74_37	-1	known	silent	c.258	p.V86	1.000	tigrfam_Na_Ca_Ex	pfam_NaCa_Exmemb,pfam_Calx_beta,smart_Calx_beta,pfscan_DnaJ_domain,prints_Na_Ca_Ex,prints_NaCa_exhngr1,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A1	HGNC	ENSG00000183023				132	1	0.75188	118	15	11.2782
PLEKHH2	0	genome.wustl.edu	37	2	43958705	43958705	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	43958705	43958705	C	T	SNP	PLEKHH2	ENST00000282406	human	ensembl	74_37	+1	known	silent	c.2907	p.S969	0.425	smart_MyTH4_dom,pfscan_MyTH4_dom	pfam_Pleckstrin_homology,pfam_MyTH4_dom,pfam_FERM_central,superfamily_FERM_central,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology	-	no_errors	PLEKHH2	HGNC	ENSG00000152527				58	0	0	77	15	16.3043
SIX3	0	genome.wustl.edu	37	2	45169750	45169750	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	45169750	45169750	G	A	SNP	SIX3	ENST00000260653	human	ensembl	74_37	+1	known	nonsense	c.507	p.W169*	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	SIX3	HGNC	ENSG00000138083				12	0	0	11	5	31.25
SMEK2	0	genome.wustl.edu	37	2	55792152	55792152	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	55792152	55792152	T	C	SNP	SMEK2	ENST00000272313	human	ensembl	74_37	-1	known	missense	c.1706	p.H569R	1.000	superfamily_ARM-type_fold	pfam_DUF625,superfamily_ARM-type_fold	-	no_errors	SMEK2	HGNC	ENSG00000138041				18	0	0	28	2	6.66667
SERTAD2	0	genome.wustl.edu	37	2	64863063	64863063	+	Nonstop_Mutation	SNP	A	A	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	64863063	64863063	A	C	SNP	SERTAD2	ENST00000313349	human	ensembl	74_37	-1	known	nonstop	c.943	p.*315E	1.000	NULL	pfam_SERTA,pfscan_SERTA	-	no_errors	SERTAD2	HGNC	ENSG00000179833				74	0	0	58	17	22.6667
ZNF638	0	genome.wustl.edu	37	2	71635329	71635329	+	Silent	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	71635329	71635329	T	C	SNP	ZNF638	ENST00000264447	human	ensembl	74_37	+1	known	silent	c.3213	p.G1071	1.000	NULL	pfam_RRM_dom,smart_Znf_U1,smart_Znf_C2H2-like,smart_RRM_dom,pfscan_Znf_C2H2_matrin,pfscan_RRM_dom	-	no_errors	ZNF638	HGNC	ENSG00000075292				55	0	0	63	8	11.2676
RNF144A	0	genome.wustl.edu	37	2	7170255	7170255	+	Splice_Site	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	7170255	7170255	A	G	SNP	RNF144A	ENST00000320892	human	ensembl	74_37	+1	known	splice_site	c.658-2	e6-2	1.000	-	-	-	no_errors	RNF144A	HGNC	ENSG00000151692				50	0	0	44	8	15.3846
NAT8	0	genome.wustl.edu	37	2	73868171	73868171	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	73868171	73868171	C	G	SNP	NAT8	ENST00000272425	human	ensembl	74_37	-1	known	missense	c.585	p.K195N	0.000	pfam_FR47,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	pfam_GNAT_dom,pfam_FR47,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	NAT8	HGNC	ENSG00000144035				64	0	0	59	17	22.3684
DGUOK	0	genome.wustl.edu	37	2	74177850	74177850	+	Silent	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	74177850	74177850	T	C	SNP	DGUOK	ENST00000264093	human	ensembl	74_37	+1	known	silent	c.582	p.A194	0.001	pfam_Deoxynucleoside_kinase,superfamily_P-loop_NTPase	pfam_Deoxynucleoside_kinase,superfamily_P-loop_NTPase	-	no_errors	DGUOK	HGNC	ENSG00000114956				271	2	0.732601	242	43	15.0877
TET3	0	genome.wustl.edu	37	2	74327752	74327752	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	74327752	74327752	C	T	SNP	TET3	ENST00000409262	human	ensembl	74_37	+1	known	silent	c.3432	p.Y1144	0.005	NULL	NULL	-	no_errors	TET3	HGNC	ENSG00000187605				71	0	0	56	8	12.5
MOB1A	0	genome.wustl.edu	37	2	74386330	74386330	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	74386330	74386330	C	T	SNP	MOB1A	ENST00000396049	human	ensembl	74_37	-1	known	missense	c.461	p.R154H	1.000	pfam_Mob1_phocein,superfamily_Mob1_phocein	pfam_Mob1_phocein,superfamily_Mob1_phocein	-	no_errors	MOB1A	HGNC	ENSG00000114978				79	0	0	81	14	14.7368
CAPG	0	genome.wustl.edu	37	2	85628441	85628441	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	85628441	85628441	C	T	SNP	CAPG	ENST00000263867	human	ensembl	74_37	-1	known	silent	c.363	p.V121	1.000	NULL	pfam_Gelsolin_dom,smart_Villin/Gelsolin,prints_Villin/Gelsolin	-	no_errors	CAPG	HGNC	ENSG00000042493				50	0	0	50	8	13.7931
TMEM150A	0	genome.wustl.edu	37	2	85829045	85829045	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	85829045	85829045	G	A	SNP	TMEM150A	ENST00000334462	human	ensembl	74_37	-1	known	silent	c.27	p.V9	1.000	pfam_Frag1/DRAM/Sfk1	pfam_Frag1/DRAM/Sfk1	-	no_errors	TMEM150A	HGNC	ENSG00000168890				198	1	0.502513	148	34	18.6813
SFTPB	0	genome.wustl.edu	37	2	85890528	85890528	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	85890528	85890528	G	A	SNP	SFTPB	ENST00000393822	human	ensembl	74_37	-1	known	nonsense	c.979	p.Q327*	0.207	superfamily_Saposin-like,smart_SaposinB,pfscan_SaposinB	pfam_SapB_2,pfam_SapA,pfam_SapB_1,superfamily_Saposin-like,smart_SapA,smart_SaposinB,pfscan_SapA,pfscan_SaposinB,prints_Saposin	-	no_errors	SFTPB	HGNC	ENSG00000168878				41	0	0	35	10	22.2222
POLR1A	0	genome.wustl.edu	37	2	86305040	86305040	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	86305040	86305040	G	A	SNP	POLR1A	ENST00000263857	human	ensembl	74_37	-1	known	missense	c.1322	p.A441V	1.000	pfam_RNA_pol_asu,smart_RNA_pol_N	pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,pfam_RNA_pol_Rpb1_1,smart_RNA_pol_N	-	no_errors	POLR1A	HGNC	ENSG00000068654				128	0	0	131	14	9.65517
CHMP3	0	genome.wustl.edu	37	2	86756342	86756342	+	Silent	SNP	G	G	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	86756342	86756342	G	T	SNP	CHMP3	ENST00000439940	human	ensembl	74_37	-1	known	silent	c.372	p.L124	0.004	pfam_Snf7	pfam_Snf7	-	no_errors	CHMP3	HGNC	ENSG00000115561				71	0	0	68	9	11.6883
ZNF514	0	genome.wustl.edu	37	2	95818899	95818899	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	95818899	95818899	A	C	SNP	ZNF514	ENST00000295208	human	ensembl	74_37	-1	known	missense	c.100	p.F34V	0.999	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF514	HGNC	ENSG00000144026				94	0	0	84	11	11.5789
PROM2	0	genome.wustl.edu	37	2	95947910	95947910	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	95947910	95947910	C	T	SNP	PROM2	ENST00000317620	human	ensembl	74_37	+1	known	missense	c.1664	p.A555V	0.000	pfam_Prominin	pfam_Prominin	-	no_errors	PROM2	HGNC	ENSG00000155066				34	0	0	22	7	24.1379
SNRNP200	0	genome.wustl.edu	37	2	96956091	96956091	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	96956091	96956091	G	A	SNP	SNRNP200	ENST00000323853	human	ensembl	74_37	-1	known	silent	c.2715	p.I905	0.038	superfamily_P-loop_NTPase,pfscan_Helicase_C	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SNRNP200	HGNC	ENSG00000144028				177	0	0	170	26	13.2653
NEURL3	0	genome.wustl.edu	37	2	97164021	97164021	+	RNA	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	97164021	97164021	G	A	SNP	NEURL3	ENST00000310865	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NEURL3	HGNC	ENSG00000163121				9	0	0	8	3	27.2727
ZAP70	0	genome.wustl.edu	37	2	98351166	98351166	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	98351166	98351166	G	A	SNP	ZAP70	ENST00000264972	human	ensembl	74_37	+1	known	missense	c.1073	p.R358H	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,superfamily_Kinase-like_dom,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,pfscan_SH2,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ZAP70	HGNC	ENSG00000115085				57	0	0	36	12	25
TSGA10	0	genome.wustl.edu	37	2	99721883	99721883	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	99721883	99721883	G	A	SNP	TSGA10	ENST00000355053	human	ensembl	74_37	-1	known	missense	c.398	p.A133V	1.000	NULL	NULL	-	no_errors	TSGA10	HGNC	ENSG00000135951				78	0	0	85	6	6.59341
ISM1	0	genome.wustl.edu	37	20	13273089	13273089	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	20	13273089	13273089	G	A	SNP	ISM1	ENST00000262487	human	ensembl	74_37	+1	known	missense	c.856	p.A286T	1.000	NULL	pfam_AMOP,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_AMOP,pfscan_AMOP,pfscan_Thrombospondin_1_rpt	-	no_errors	ISM1	HGNC	ENSG00000101230				19	0	0	24	7	22.5806
SEL1L2	0	genome.wustl.edu	37	20	13971151	13971151	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	20	13971151	13971151	T	C	SNP	SEL1L2	ENST00000284951	human	ensembl	74_37	-1	known	missense	c.30	p.I10M	0.991	NULL	pfam_Sel1-like,smart_Sel1-like	-	no_errors	SEL1L2	HGNC	ENSG00000101251				69	0	0	59	10	14.4928
PCSK2	0	genome.wustl.edu	37	20	17434530	17434530	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	20	17434530	17434530	C	T	SNP	PCSK2	ENST00000262545	human	ensembl	74_37	+1	known	silent	c.1029	p.Y343	0.743	pfam_Peptidase_S8/S53_dom,superfamily_Peptidase_S8/S53_dom	pfam_Peptidase_S8/S53_dom,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53_dom,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK2	HGNC	ENSG00000125851				77	0	0	63	11	14.8649
PCSK2	0	genome.wustl.edu	37	20	17462302	17462302	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	20	17462302	17462302	C	T	SNP	PCSK2	ENST00000262545	human	ensembl	74_37	+1	known	missense	c.1504	p.R502C	1.000	superfamily_Galactose-bd-like	pfam_Peptidase_S8/S53_dom,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53_dom,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK2	HGNC	ENSG00000125851				76	0	0	73	14	16.092
SNX5	0	genome.wustl.edu	37	20	17937586	17937586	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	20	17937586	17937586	C	T	SNP	SNX5	ENST00000377759	human	ensembl	74_37	-1	known	silent	c.147	p.V49	0.997	pfam_Phox,superfamily_Phox,pirsf_Snx5_Snx6,pfscan_Phox	pfam_Phox,pfam_Vps5_C,superfamily_Phox,pirsf_Snx5_Snx6,pfscan_Phox	-	no_errors	SNX5	HGNC	ENSG00000089006				56	0	0	38	4	9.52381
MGME1	0	genome.wustl.edu	37	20	17956339	17956339	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	20	17956339	17956339	A	G	SNP	MGME1	ENST00000377710	human	ensembl	74_37	+1	known	missense	c.524	p.Q175R	1.000	NULL	superfamily_Restrct_endonuc-II-like	-	no_errors	MGME1	HGNC	ENSG00000125871				33	0	0	39	11	22
GGTLC1	0	genome.wustl.edu	37	20	23965921	23965921	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	20	23965921	23965921	C	T	SNP	GGTLC1	ENST00000278765	human	ensembl	74_37	-1	known	missense	c.610	p.V204I	1.000	pfam_GGT_peptidase	pfam_GGT_peptidase,prints_GGT_peptidase	-	no_errors	GGTLC1	HGNC	ENSG00000149435				96	0	0	73	13	15.1163
TMC2	0	genome.wustl.edu	37	20	2593878	2593878	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	20	2593878	2593878	G	A	SNP	TMC2	ENST00000358864	human	ensembl	74_37	+1	known	silent	c.1782	p.T594	0.115	pfam_TMC	pfam_TMC	-	no_errors	TMC2	HGNC	ENSG00000149488				55	0	0	32	5	13.5135
PTPRA	0	genome.wustl.edu	37	20	3016241	3016241	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	20	3016241	3016241	C	T	SNP	PTPRA	ENST00000425918	human	ensembl	74_37	+1	known	missense	c.1964	p.A655V	1.000	pirsf_Tyr_Pase_rcpt_a/e-type,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pirsf_Tyr_Pase_rcpt_a/e-type,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRA	HGNC	ENSG00000132670				38	0	0	44	3	6.38298
HCK	0	genome.wustl.edu	37	20	30659469	30659469	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	20	30659469	30659469	G	A	SNP	HCK	ENST00000375852	human	ensembl	74_37	+1	known	missense	c.67	p.G23R	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	HCK	HGNC	ENSG00000101336				95	0	0	77	9	10.4651
TTI1	0	genome.wustl.edu	37	20	36640099	36640099	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	20	36640099	36640099	C	T	SNP	TTI1	ENST00000373447	human	ensembl	74_37	-1	known	missense	c.2120	p.R707H	0.981	superfamily_ARM-type_fold,pirsf_UCP005250	superfamily_ARM-type_fold,pirsf_UCP005250	-	no_errors	TTI1	HGNC	ENSG00000101407				59	0	0	54	8	12.9032
LPIN3	0	genome.wustl.edu	37	20	39986566	39986566	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	20	39986566	39986566	T	C	SNP	LPIN3	ENST00000373257	human	ensembl	74_37	+1	known	missense	c.2084	p.M695T	1.000	pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2	pfam_LNS2,pfam_Lipin_N,superfamily_HAD-like_dom,smart_LNS2	-	no_errors	LPIN3	HGNC	ENSG00000132793				60	0	0	38	8	17.3913
CHD6	0	genome.wustl.edu	37	20	40033290	40033290	+	Silent	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	20	40033290	40033290	T	C	SNP	CHD6	ENST00000373233	human	ensembl	74_37	-1	known	silent	c.8091	p.E2697	0.932	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_BRK_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD6	HGNC	ENSG00000124177				109	0	0	120	17	12.4088
PTPRT	0	genome.wustl.edu	37	20	40727077	40727077	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	20	40727077	40727077	T	A	SNP	PTPRT	ENST00000373198	human	ensembl	74_37	-1	known	missense	c.3887	p.E1296V	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRT	HGNC	ENSG00000196090				58	0	0	65	11	14.4737
PTPRT	0	genome.wustl.edu	37	20	40735471	40735471	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	20	40735471	40735471	G	A	SNP	PTPRT	ENST00000373198	human	ensembl	74_37	-1	known	silent	c.3402	p.C1134	0.983	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRT	HGNC	ENSG00000196090				85	0	0	69	8	10.3896
SERINC3	0	genome.wustl.edu	37	20	43138579	43138579	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	20	43138579	43138579	G	A	SNP	SERINC3	ENST00000255175	human	ensembl	74_37	-1	known	missense	c.566	p.S189L	0.000	pfam_TMS_TDE	pfam_TMS_TDE	-	no_errors	SERINC3	HGNC	ENSG00000132824				142	0	0	126	15	10.6383
ADA	0	genome.wustl.edu	37	20	43248966	43248966	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	20	43248966	43248966	T	C	SNP	ADA	ENST00000372874	human	ensembl	74_37	-1	known	missense	c.1052	p.Y351C	0.998	NULL	pfam_A/AMP_deaminase_dom,tigrfam_Ado/ade_deaminase	-	no_errors	ADA	HGNC	ENSG00000196839				112	0	0	94	24	20.339
PREX1	0	genome.wustl.edu	37	20	47266542	47266542	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	20	47266542	47266542	G	A	SNP	PREX1	ENST00000371941	human	ensembl	74_37	-1	known	missense	c.3020	p.P1007L	0.989	NULL	pfam_DH-domain,pfam_DEP_dom,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX1	HGNC	ENSG00000124126				48	0	0	63	8	11.2676
ZNFX1	0	genome.wustl.edu	37	20	47879934	47879934	+	Silent	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	20	47879934	47879934	T	C	SNP	ZNFX1	ENST00000371752	human	ensembl	74_37	-1	known	silent	c.2238	p.E746	0.739	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_Znf_NFX1	-	no_errors	ZNFX1	HGNC	ENSG00000124201				33	0	0	35	12	25.5319
SPATA2	0	genome.wustl.edu	37	20	48523040	48523040	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	20	48523040	48523040	G	A	SNP	SPATA2	ENST00000289431	human	ensembl	74_37	-1	known	nonsense	c.679	p.R227*	0.998	NULL	NULL	-	no_errors	SPATA2	HGNC	ENSG00000158480				18	0	0	17	3	15
SNAI1	0	genome.wustl.edu	37	20	48600381	48600381	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	20	48600381	48600381	T	A	SNP	SNAI1	ENST00000244050	human	ensembl	74_37	+1	known	missense	c.103	p.Y35N	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SNAI1	HGNC	ENSG00000124216				62	0	0	55	13	19.1176
FAM65C	0	genome.wustl.edu	37	20	49219090	49219090	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	20	49219090	49219090	C	T	SNP	FAM65C	ENST00000535356	human	ensembl	74_37	-1	known	missense	c.1178	p.R393Q	0.000	NULL	superfamily_ARM-type_fold,superfamily_Chemokine_IL8-like_dom	-	no_errors	FAM65C	HGNC	ENSG00000042062				33	0	0	43	7	14
NFATC2	0	genome.wustl.edu	37	20	50133334	50133334	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	20	50133334	50133334	G	A	SNP	NFATC2	ENST00000396009	human	ensembl	74_37	-1	known	missense	c.1321	p.P441S	1.000	pfam_RHD,superfamily_p53-like_TF_DNA-bd,pfscan_RHD,prints_NFAT	pfam_RHD,pfam_IPT,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT,pfscan_RHD,prints_NFAT	-	no_errors	NFATC2	HGNC	ENSG00000101096				63	0	0	58	7	10.7692
CDH26	0	genome.wustl.edu	37	20	58567530	58567530	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	20	58567530	58567530	G	A	SNP	CDH26	ENST00000244047	human	ensembl	74_37	+1	known	missense	c.1381	p.V461I	0.072	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH26	HGNC	ENSG00000124215				55	0	0	62	6	8.82353
CDH4	0	genome.wustl.edu	37	20	60448951	60448951	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	20	60448951	60448951	C	T	SNP	CDH4	ENST00000360469	human	ensembl	74_37	+1	known	nonsense	c.1045	p.R349*	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Cadherin/Desmocollin	-	no_errors	CDH4	HGNC	ENSG00000179242				59	0	0	44	8	15.3846
LAMA5	0	genome.wustl.edu	37	20	60888776	60888776	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	20	60888776	60888776	C	T	SNP	LAMA5	ENST00000252999	human	ensembl	74_37	-1	known	missense	c.8587	p.A2863T	0.987	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_EGF_laminin,pfam_Laminin_I,pfam_Laminin_G,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	LAMA5	HGNC	ENSG00000130702				56	0	0	54	7	11.4754
ZNF512B	0	genome.wustl.edu	37	20	62595544	62595544	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	20	62595544	62595544	G	A	SNP	ZNF512B	ENST00000217130	human	ensembl	74_37	-1	known	nonsense	c.1360	p.R454*	0.943	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF512B	HGNC	ENSG00000196700				81	0	0	66	17	20.4819
LIPI	0	genome.wustl.edu	37	21	15561475	15561475	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	21	15561475	15561475	T	G	SNP	LIPI	ENST00000344577	human	ensembl	74_37	-1	known	missense	c.375	p.E125D	0.085	pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH	pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase	-	no_errors	LIPI	HGNC	ENSG00000188992				49	0	0	59	17	22.3684
LTN1	0	genome.wustl.edu	37	21	30329691	30329691	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	21	30329691	30329691	C	T	SNP	LTN1	ENST00000389194	human	ensembl	74_37	-1	known	missense	c.2993	p.S998N	0.257	NULL	pfam_Znf_C3HC4_RING-type,superfamily_ARM-type_fold,smart_Znf_RING-CH,pfscan_Znf_RING	-	no_errors	LTN1	HGNC	ENSG00000198862				64	0	0	98	8	7.54717
CLDN17	0	genome.wustl.edu	37	21	31538770	31538770	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	21	31538770	31538770	G	A	SNP	CLDN17	ENST00000286808	human	ensembl	74_37	-1	known	nonsense	c.166	p.R56*	0.579	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin,prints_Claudin14,prints_Claudin8	-	no_errors	CLDN17	HGNC	ENSG00000156282				71	0	0	60	10	14.2857
KRTAP19-1	0	genome.wustl.edu	37	21	31852407	31852407	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	21	31852407	31852407	C	T	SNP	KRTAP19-1	ENST00000390689	human	ensembl	74_37	-1	known	missense	c.230	p.R77H	0.000	pfam_KRTAP_type6/8/16/19/20	pfam_KRTAP_type6/8/16/19/20	-	no_errors	KRTAP19-1	HGNC	ENSG00000184351				274	1	0.363636	221	39	15
EVA1C	0	genome.wustl.edu	37	21	33887601	33887601	+	RNA	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	21	33887601	33887601	C	T	SNP	EVA1C	ENST00000485488	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	EVA1C	HGNC	ENSG00000166979				29	0	0	33	8	19.5122
IFNGR2	0	genome.wustl.edu	37	21	34809262	34809262	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	21	34809262	34809262	C	T	SNP	IFNGR2	ENST00000290219	human	ensembl	74_37	+1	known	missense	c.1007	p.T336M	0.000	NULL	pfam_Interferon_alpha/beta_rcpt_bsu,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IFNGR2	HGNC	ENSG00000159128				56	0	0	68	15	18.0723
CHAF1B	0	genome.wustl.edu	37	21	37763965	37763965	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	21	37763965	37763965	C	T	SNP	CHAF1B	ENST00000314103	human	ensembl	74_37	+1	known	missense	c.376	p.R126W	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Gprotein_B	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Gprotein_B	-	no_errors	CHAF1B	HGNC	ENSG00000159259				55	0	0	42	8	16
FAM3B	0	genome.wustl.edu	37	21	42694964	42694964	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	21	42694964	42694964	G	A	SNP	FAM3B	ENST00000357985	human	ensembl	74_37	+1	known	missense	c.134	p.R45H	0.002	NULL	NULL	-	no_errors	FAM3B	HGNC	ENSG00000183844				64	0	0	49	11	18.3333
RIPK4	0	genome.wustl.edu	37	21	43161902	43161902	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	21	43161902	43161902	C	T	SNP	RIPK4	ENST00000352483	human	ensembl	74_37	-1	known	missense	c.1595	p.R532Q	0.336	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_dom,prints_Ankyrin_rpt,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RIPK4	HGNC	ENSG00000183421				67	0	0	54	8	12.9032
ZBTB21	0	genome.wustl.edu	37	21	43411221	43411221	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	21	43411221	43411221	T	C	SNP	ZBTB21	ENST00000310826	human	ensembl	74_37	-1	known	missense	c.2984	p.K995R	1.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB21	HGNC	ENSG00000173276				70	0	0	64	7	9.85915
UMODL1	0	genome.wustl.edu	37	21	43504209	43504209	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	21	43504209	43504209	G	T	SNP	UMODL1	ENST00000408989	human	ensembl	74_37	+1	known	missense	c.335	p.G112V	0.000	superfamily_WAP-type_4-diS_core	pfam_ZP_dom,pfam_SEA_dom,pfam_EGF-like_Ca-bd_dom,pfam_EMI_domain,pfam_WAP-type_4-diS_core,superfamily_Fibronectin_type3,superfamily_WAP-type_4-diS_core,smart_WAP-type_4-diS_core,smart_EGF-like_Ca-bd_dom,smart_Fibronectin_type3,smart_ZP_dom,pfscan_EG-like_dom,pfscan_EMI_domain,pfscan_Fibronectin_type3,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	UMODL1	HGNC	ENSG00000177398				219	0	0	197	42	17.5732
ITGB2	0	genome.wustl.edu	37	21	46326963	46326963	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	21	46326963	46326963	C	T	SNP	ITGB2	ENST00000302347	human	ensembl	74_37	-1	known	silent	c.195	p.R65	0.000	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,prints_Integrin_bsu	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_tail,pfam_Integrin_bsu_cyt_dom,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB2	HGNC	ENSG00000160255				63	0	0	37	5	11.9048
COL18A1	0	genome.wustl.edu	37	21	46888205	46888205	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	21	46888205	46888205	G	A	SNP	COL18A1	ENST00000359759	human	ensembl	74_37	+1	known	silent	c.1401	p.P467	0.090	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_Collagenase_NC10/endostatin,pfam_DUF959_COL18_N,pfam_Collagen,pfam_Frizzled_dom,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl_sf,superfamily_Frizzled_dom,smart_Frizzled_dom,smart_Laminin_G,pfscan_Frizzled_dom	-	no_errors	COL18A1	HGNC	ENSG00000182871				28	0	0	14	7	33.3333
MCM3AP	0	genome.wustl.edu	37	21	47680751	47680751	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	21	47680751	47680751	G	A	SNP	MCM3AP	ENST00000291688	human	ensembl	74_37	-1	known	silent	c.3537	p.R1179	0.001	NULL	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	-	no_errors	MCM3AP	HGNC	ENSG00000160294				81	0	0	90	5	5.26316
CCT8L2	0	genome.wustl.edu	37	22	17073106	17073106	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	22	17073106	17073106	G	A	SNP	CCT8L2	ENST00000359963	human	ensembl	74_37	-1	known	missense	c.335	p.T112M	0.013	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,prints_Chaperone_TCP-1	-	no_errors	CCT8L2	HGNC	ENSG00000198445				39	0	0	40	5	11.1111
TSSK2	0	genome.wustl.edu	37	22	19119321	19119321	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	22	19119321	19119321	C	T	SNP	TSSK2	ENST00000399635	human	ensembl	74_37	+1	known	missense	c.409	p.L137F	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TSSK2	HGNC	ENSG00000206203				100	0	0	76	13	14.6067
SMARCB1	0	genome.wustl.edu	37	22	24135750	24135750	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	22	24135750	24135750	C	T	SNP	SMARCB1	ENST00000263121	human	ensembl	74_37	+1	known	silent	c.237	p.H79	0.746	pirsf_SWI_SNF_chromatin_remodel_cplx	pfam_SNF5,pirsf_SWI_SNF_chromatin_remodel_cplx	-	no_errors	SMARCB1	HGNC	ENSG00000099956				160	0	0	111	21	15.9091
SMARCB1	0	genome.wustl.edu	37	22	24145518	24145518	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	22	24145518	24145518	C	T	SNP	SMARCB1	ENST00000263121	human	ensembl	74_37	+1	known	silent	c.537	p.N179	0.854	pfam_SNF5,pirsf_SWI_SNF_chromatin_remodel_cplx	pfam_SNF5,pirsf_SWI_SNF_chromatin_remodel_cplx	-	no_errors	SMARCB1	HGNC	ENSG00000099956				128	0	0	107	13	10.8333
CABIN1	0	genome.wustl.edu	37	22	24487708	24487708	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	22	24487708	24487708	G	A	SNP	CABIN1	ENST00000263119	human	ensembl	74_37	+1	known	missense	c.3697	p.A1233T	1.000	NULL	pfam_MEF2_binding,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CABIN1	HGNC	ENSG00000099991				49	0	0	34	7	17.0732
PIWIL3	0	genome.wustl.edu	37	22	25151789	25151789	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	22	25151789	25151789	C	T	SNP	PIWIL3	ENST00000332271	human	ensembl	74_37	-1	known	silent	c.654	p.S218	0.000	superfamily_PAZ_dom	pfam_Piwi,pfam_PAZ_dom,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	PIWIL3	HGNC	ENSG00000184571				115	0	0	123	24	16.3265
MN1	0	genome.wustl.edu	37	22	28193441	28193441	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	22	28193441	28193441	C	T	SNP	MN1	ENST00000302326	human	ensembl	74_37	-1	known	missense	c.3091	p.G1031R	1.000	NULL	NULL	-	no_errors	MN1	HGNC	ENSG00000169184				68	0	0	45	23	33.8235
MTMR3	0	genome.wustl.edu	37	22	30418067	30418067	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	22	30418067	30418067	G	A	SNP	MTMR3	ENST00000401950	human	ensembl	74_37	+1	known	missense	c.3275	p.R1092H	1.000	NULL	pfam_Myotubularin-like_Pase_dom,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Tyr_Pase_cat,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	MTMR3	HGNC	ENSG00000100330				57	0	0	60	10	14.2857
GAL3ST1	0	genome.wustl.edu	37	22	30951340	30951340	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	22	30951340	30951340	C	T	SNP	GAL3ST1	ENST00000338911	human	ensembl	74_37	-1	known	missense	c.872	p.G291E	0.110	pfam_Gal-3-0_sulfotransfrase	pfam_Gal-3-0_sulfotransfrase,superfamily_P-loop_NTPase	-	no_errors	GAL3ST1	HGNC	ENSG00000128242				32	0	0	28	4	12.5
SMTN	0	genome.wustl.edu	37	22	31495882	31495882	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	22	31495882	31495882	A	G	SNP	SMTN	ENST00000347557	human	ensembl	74_37	+1	known	missense	c.2603	p.E868G	1.000	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_Smoothelin,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	SMTN	HGNC	ENSG00000183963				37	0	0	42	4	8.69565
C1QTNF6	0	genome.wustl.edu	37	22	37578581	37578581	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	22	37578581	37578581	T	C	SNP	C1QTNF6	ENST00000337843	human	ensembl	74_37	-1	known	missense	c.484	p.T162A	0.902	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF6	HGNC	ENSG00000133466				38	0	0	30	6	16.6667
ELFN2	0	genome.wustl.edu	37	22	37769859	37769859	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	22	37769859	37769859	G	A	SNP	ELFN2	ENST00000402918	human	ensembl	74_37	-1	known	silent	c.1716	p.P572	0.018	NULL	superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,pfscan_LPXTG_anchor	-	no_errors	ELFN2	HGNC	ENSG00000166897				22	0	0	15	4	21.0526
TRIOBP	0	genome.wustl.edu	37	22	38122069	38122069	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	22	38122069	38122069	G	A	SNP	TRIOBP	ENST00000406386	human	ensembl	74_37	+1	known	missense	c.3506	p.R1169Q	0.974	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	TRIOBP	HGNC	ENSG00000100106				68	0	0	63	7	10
GCAT	0	genome.wustl.edu	37	22	38211178	38211178	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	22	38211178	38211178	G	A	SNP	GCAT	ENST00000248924	human	ensembl	74_37	+1	known	missense	c.622	p.D208N	1.000	pfam_Aminotransferase_I/II,pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase,tigrfam_2am3keto_CoA_ligase	pfam_Aminotransferase_I/II,pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase,tigrfam_2am3keto_CoA_ligase	-	no_errors	GCAT	HGNC	ENSG00000100116				45	0	0	29	8	21.6216
SUN2	0	genome.wustl.edu	37	22	39144747	39144747	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	22	39144747	39144747	G	A	SNP	SUN2	ENST00000216064	human	ensembl	74_37	-1	known	missense	c.656	p.P219L	0.971	NULL	pfam_Sad1_UNC_C,superfamily_Galactose-bd-like	-	no_errors	SUN2	HGNC	ENSG00000100242				96	0	0	75	17	18.4783
EP300	0	genome.wustl.edu	37	22	41527639	41527639	+	Splice_Site	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	22	41527639	41527639	T	C	SNP	EP300	ENST00000263253	human	ensembl	74_37	+1	known	splice_site	c.1528+2	e6+2	1.000	-	-	-	no_errors	EP300	HGNC	ENSG00000100393				63	0	0	66	8	10.8108
TOB2	0	genome.wustl.edu	37	22	41832529	41832529	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	22	41832529	41832529	G	A	SNP	TOB2	ENST00000327492	human	ensembl	74_37	-1	known	missense	c.821	p.A274V	0.979	NULL	pfam_Anti_prolifrtn,pfam_Ataxin-2_C,smart_Anti_prolifrtn,prints_Anti_prolifrtn	-	no_errors	TOB2	HGNC	ENSG00000183864				15	0	0	15	3	16.6667
SREBF2	0	genome.wustl.edu	37	22	42276824	42276824	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	22	42276824	42276824	C	T	SNP	SREBF2	ENST00000424354	human	ensembl	74_37	+1	known	missense	c.1966	p.R656C	0.988	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	SREBF2	HGNC	ENSG00000198911				48	0	0	32	11	25.5814
RRP7A	0	genome.wustl.edu	37	22	42910211	42910211	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	22	42910211	42910211	C	T	SNP	RRP7A	ENST00000323013	human	ensembl	74_37	-1	known	missense	c.658	p.A220T	1.000	NULL	NULL	-	no_errors	RRP7A	HGNC	ENSG00000189306				10	0	0	5	3	37.5
EFCAB6	0	genome.wustl.edu	37	22	44028036	44028036	+	Silent	SNP	G	G	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	22	44028036	44028036	G	T	SNP	EFCAB6	ENST00000262726	human	ensembl	74_37	-1	known	silent	c.2181	p.T727	0.004	NULL	pfam_EF_hand_Ca-bd_contain_6,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	EFCAB6	HGNC	ENSG00000186976				109	0	0	107	14	11.5702
ALG12	0	genome.wustl.edu	37	22	50301525	50301525	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	22	50301525	50301525	A	G	SNP	ALG12	ENST00000330817	human	ensembl	74_37	-1	known	missense	c.836	p.I279T	0.873	pfam_GPI_mannosylTrfase	pfam_GPI_mannosylTrfase	-	no_errors	ALG12	HGNC	ENSG00000182858				48	0	0	46	10	17.8571
CPT1B	0	genome.wustl.edu	37	22	51015369	51015369	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	22	51015369	51015369	G	C	SNP	CPT1B	ENST00000312108	human	ensembl	74_37	-1	known	missense	c.376	p.Q126E	1.000	NULL	pfam_Carn_acyl_trans	-	no_errors	CPT1B	HGNC	ENSG00000205560				149	0	0	161	34	17.4359
IMPG2	0	genome.wustl.edu	37	3	100949961	100949961	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	100949961	100949961	G	A	SNP	IMPG2	ENST00000193391	human	ensembl	74_37	-1	known	nonsense	c.3262	p.R1088*	1.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	IMPG2	HGNC	ENSG00000081148				257	1	0.387597	242	34	12.3188
FANCD2	0	genome.wustl.edu	37	3	10108898	10108898	+	Silent	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	10108898	10108898	A	G	SNP	FANCD2	ENST00000287647	human	ensembl	74_37	+1	known	silent	c.2391	p.V797	0.998	NULL	superfamily_ARM-type_fold	-	no_errors	FANCD2	HGNC	ENSG00000144554				24	0	0	34	5	12.8205
MYH15	0	genome.wustl.edu	37	3	108183492	108183492	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	108183492	108183492	G	A	SNP	MYH15	ENST00000273353	human	ensembl	74_37	-1	known	missense	c.1784	p.A595V	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_Lambda_DNA-bd_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYH15	HGNC	ENSG00000144821				214	0	0	236	32	11.9403
SLC6A1	0	genome.wustl.edu	37	3	11064133	11064133	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	11064133	11064133	G	T	SNP	SLC6A1	ENST00000287766	human	ensembl	74_37	+1	known	missense	c.693	p.K231N	0.998	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_GABA_GAT1,pfscan_Na/ntran_symport	-	no_errors	SLC6A1	HGNC	ENSG00000157103				14	0	0	22	4	15.3846
WDR52	0	genome.wustl.edu	37	3	113092397	113092397	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	113092397	113092397	A	G	SNP	WDR52	ENST00000393845	human	ensembl	74_37	-1	known	missense	c.2305	p.Y769H	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR52	HGNC	ENSG00000206530				32	0	0	44	6	12
SIDT1	0	genome.wustl.edu	37	3	113285337	113285337	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	113285337	113285337	G	A	SNP	SIDT1	ENST00000393830	human	ensembl	74_37	+1	known	missense	c.293	p.R98H	1.000	NULL	NULL	-	no_errors	SIDT1	HGNC	ENSG00000072858				101	0	0	93	22	19.1304
KIAA1407	0	genome.wustl.edu	37	3	113697052	113697052	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	113697052	113697052	C	T	SNP	KIAA1407	ENST00000295878	human	ensembl	74_37	-1	known	missense	c.2587	p.A863T	0.206	NULL	NULL	-	no_errors	KIAA1407	HGNC	ENSG00000163617				92	0	0	91	17	15.7407
TAMM41	0	genome.wustl.edu	37	3	11885643	11885643	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	11885643	11885643	C	T	SNP	TAMM41	ENST00000273037	human	ensembl	74_37	-1	known	missense	c.178	p.A60T	0.000	pfam_Mmp37,pirsf_Mmp37	pfam_Mmp37,pirsf_Mmp37	-	no_errors	TAMM41	HGNC	ENSG00000144559				53	0	0	65	13	16.6667
STXBP5L	0	genome.wustl.edu	37	3	121132132	121132132	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	121132132	121132132	C	T	SNP	STXBP5L	ENST00000273666	human	ensembl	74_37	+1	known	missense	c.3148	p.R1050W	1.000	pfam_Lgl_C_dom	pfam_LLGL2,pfam_WD40_repeat,pfam_Lgl_C_dom,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,pfscan_Synaptobrevin,prints_Lethal2_giant	-	no_errors	STXBP5L	HGNC	ENSG00000145087				61	0	0	80	9	10.1124
ZNF148	0	genome.wustl.edu	37	3	124951370	124951370	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	124951370	124951370	G	A	SNP	ZNF148	ENST00000360647	human	ensembl	74_37	-1	known	missense	c.2200	p.R734C	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF148	HGNC	ENSG00000163848				86	0	0	68	15	18.0723
MGLL	0	genome.wustl.edu	37	3	127454620	127454620	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	127454620	127454620	G	A	SNP	MGLL	ENST00000398101	human	ensembl	74_37	-1	putative	silent	c.82	p.L28	0.087	NULL	pfam_AB_hydrolase_1,pfam_Lipase_3,pfam_Esterase_put,pfam_AB_hydrolase_3	-	no_errors	MGLL	HGNC	ENSG00000074416				92	0	0	76	9	10.5882
ACAD9	0	genome.wustl.edu	37	3	128621403	128621403	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	128621403	128621403	T	C	SNP	ACAD9	ENST00000308982	human	ensembl	74_37	+1	known	missense	c.890	p.M297T	1.000	pfam_AcylCo_DH/oxidase_C,superfamily_AcylCoA_DH/oxidase_NM_dom,superfamily_AcylCo_DH/oxidase_C	pfam_AcylCo_DH/oxidase_C,pfam_AcylCoA_DH/ox_N,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_DH_2_C,superfamily_AcylCoA_DH/oxidase_NM_dom,superfamily_AcylCo_DH/oxidase_C	-	no_errors	ACAD9	HGNC	ENSG00000177646				50	0	0	38	11	22.449
CAND2	0	genome.wustl.edu	37	3	12875478	12875478	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	12875478	12875478	C	T	SNP	CAND2	ENST00000456430	human	ensembl	74_37	+1	known	silent	c.3708	p.S1236	1.000	NULL	pfam_TATA-bd_TIP120,pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	CAND2	HGNC	ENSG00000144712				63	0	0	66	15	18.5185
NPHP3	0	genome.wustl.edu	37	3	132403635	132403635	+	Silent	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	132403635	132403635	T	C	SNP	NPHP3	ENST00000337331	human	ensembl	74_37	-1	known	silent	c.3333	p.T1111	1.000	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,pfam_TPR-3,superfamily_P-loop_NTPase,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	NPHP3	HGNC	ENSG00000113971				45	0	0	57	9	13.6364
CEP63	0	genome.wustl.edu	37	3	134278244	134278244	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	134278244	134278244	G	A	SNP	CEP63	ENST00000337090	human	ensembl	74_37	+1	known	missense	c.1926	p.M642I	0.942	NULL	NULL	-	no_errors	CEP63	HGNC	ENSG00000182923				61	0	0	64	11	14.6667
ZBTB38	0	genome.wustl.edu	37	3	141161920	141161920	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	141161920	141161920	A	C	SNP	ZBTB38	ENST00000321464	human	ensembl	74_37	+1	known	missense	c.693	p.E231D	0.404	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB38	HGNC	ENSG00000177311				44	0	0	60	8	11.7647
CCDC174	0	genome.wustl.edu	37	3	14711585	14711585	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	14711585	14711585	G	A	SNP	CCDC174	ENST00000383794	human	ensembl	74_37	+1	known	missense	c.1097	p.R366H	1.000	NULL	NULL	-	no_errors	CCDC174	HGNC	ENSG00000154781				23	0	0	32	6	15.7895
FAM194A	0	genome.wustl.edu	37	3	150416589	150416589	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	150416589	150416589	T	C	SNP	FAM194A	ENST00000295910	human	ensembl	74_37	-1	known	missense	c.542	p.K181R	0.000	NULL	NULL	-	no_errors	FAM194A	HGNC	ENSG00000163645				108	0	0	110	17	13.3858
ANKRD28	0	genome.wustl.edu	37	3	15749455	15749455	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	15749455	15749455	G	A	SNP	ANKRD28	ENST00000383777	human	ensembl	74_37	-1	known	missense	c.1532	p.A511V	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD28	HGNC	ENSG00000206560				26	0	0	28	5	15.1515
RSRC1	0	genome.wustl.edu	37	3	157920896	157920896	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	157920896	157920896	G	A	SNP	RSRC1	ENST00000295930	human	ensembl	74_37	+1	known	missense	c.356	p.R119H	1.000	NULL	NULL	-	no_errors	RSRC1	HGNC	ENSG00000174891				64	0	0	50	6	10.7143
WDR49	0	genome.wustl.edu	37	3	167246886	167246886	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	167246886	167246886	A	C	SNP	WDR49	ENST00000308378	human	ensembl	74_37	-1	known	missense	c.1304	p.L435R	0.996	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR49	HGNC	ENSG00000174776				56	0	0	86	7	7.52688
GOLIM4	0	genome.wustl.edu	37	3	167750557	167750557	+	Silent	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	167750557	167750557	A	G	SNP	GOLIM4	ENST00000470487	human	ensembl	74_37	-1	known	silent	c.927	p.H309	0.000	NULL	NULL	-	no_errors	GOLIM4	HGNC	ENSG00000173905				99	0	0	96	15	13.5135
NAALADL2	0	genome.wustl.edu	37	3	174814591	174814591	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	174814591	174814591	G	A	SNP	NAALADL2	ENST00000454872	human	ensembl	74_37	+1	known	missense	c.55	p.A19T	1.000	NULL	superfamily_TFR-like_dimer_dom	-	no_errors	NAALADL2	HGNC	ENSG00000177694				12	0	0	16	6	27.2727
TBL1XR1	0	genome.wustl.edu	37	3	176756101	176756101	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	176756101	176756101	C	T	SNP	TBL1XR1	ENST00000430069	human	ensembl	74_37	-1	known	silent	c.1047	p.T349	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_LisH_dimerisation_subgr,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_WD40_repeat,pfscan_LisH_dimerisation,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	TBL1XR1	HGNC	ENSG00000177565				13	0	0	18	3	14.2857
EIF2B5	0	genome.wustl.edu	37	3	183859721	183859721	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	183859721	183859721	G	A	SNP	EIF2B5	ENST00000273783	human	ensembl	74_37	+1	known	missense	c.1165	p.V389M	1.000	superfamily_Trimer_LpxA-like	pfam_W2_domain,superfamily_ARM-type_fold,superfamily_Trimer_LpxA-like,smart_W2_domain	-	no_errors	EIF2B5	HGNC	ENSG00000145191				73	0	0	68	10	12.8205
ADIPOQ	0	genome.wustl.edu	37	3	186572260	186572260	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	186572260	186572260	A	G	SNP	ADIPOQ	ENST00000320741	human	ensembl	74_37	+1	known	missense	c.502	p.M168V	0.806	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	ADIPOQ	HGNC	ENSG00000181092				105	0	0	116	18	13.4328
LPP	0	genome.wustl.edu	37	3	188327061	188327061	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	188327061	188327061	A	G	SNP	LPP	ENST00000312675	human	ensembl	74_37	+1	known	missense	c.542	p.K181R	0.999	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LPP	HGNC	ENSG00000145012				251	0	0	216	39	15.2941
IL1RAP	0	genome.wustl.edu	37	3	190366420	190366420	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	190366420	190366420	C	T	SNP	IL1RAP	ENST00000072516	human	ensembl	74_37	+1	known	missense	c.1639	p.P547S	1.000	superfamily_TIR_dom,smart_TIR_dom,pfscan_TIR_dom	pfam_TIR_dom,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like_dom,prints_IL-1_rcpt_I/II-typ	-	no_errors	IL1RAP	HGNC	ENSG00000196083				73	0	0	70	10	12.5
ATP13A4	0	genome.wustl.edu	37	3	193160315	193160315	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	193160315	193160315	G	A	SNP	ATP13A4	ENST00000342695	human	ensembl	74_37	-1	known	missense	c.2183	p.A728V	1.000	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_Cation_typ_V,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP13A4	HGNC	ENSG00000127249				67	0	0	88	11	11.1111
GP5	0	genome.wustl.edu	37	3	194118478	194118478	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	194118478	194118478	C	T	SNP	GP5	ENST00000323007	human	ensembl	74_37	-1	known	silent	c.534	p.S178	0.002	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	GP5	HGNC	ENSG00000178732				88	0	0	68	15	18.0723
KCNH8	0	genome.wustl.edu	37	3	19492689	19492689	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	19492689	19492689	A	G	SNP	KCNH8	ENST00000328405	human	ensembl	74_37	+1	known	missense	c.1618	p.M540V	1.000	superfamily_cNMP-bd-like	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold_3,pfam_PAS_4,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,superfamily_tRNA-bd_arm,smart_PAC,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,pfscan_PAS-assoc_C,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,prints_K_chnl_volt-dep_EAG,tigrfam_PAS	-	no_errors	KCNH8	HGNC	ENSG00000183960				140	0	0	134	21	13.5484
MUC4	0	genome.wustl.edu	37	3	195509830	195509830	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	195509830	195509830	G	A	SNP	MUC4	ENST00000463781	human	ensembl	74_37	-1	known	missense	c.8621	p.S2874F	0.483	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EG-like_dom,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113				41	0	0	31	3	8.82353
PAK2	0	genome.wustl.edu	37	3	196554107	196554107	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	196554107	196554107	A	G	SNP	PAK2	ENST00000327134	human	ensembl	74_37	+1	known	missense	c.1391	p.Q464R	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_CRIB_dom,superfamily_Kinase-like_dom,superfamily_WASP_C,smart_CRIB_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRIB_dom,pfscan_Prot_kinase_dom	-	no_errors	PAK2	HGNC	ENSG00000180370				96	0	0	85	12	12.3711
NR1D2	0	genome.wustl.edu	37	3	24004097	24004097	+	Splice_Site	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	24004097	24004097	G	A	SNP	NR1D2	ENST00000312521	human	ensembl	74_37	+1	known	splice_site	c.1146+1	e5+1	1.000	-	-	-	no_errors	NR1D2	HGNC	ENSG00000174738				89	0	0	82	6	6.81818
EOMES	0	genome.wustl.edu	37	3	27764052	27764052	+	RNA	SNP	C	C	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	27764052	27764052	C	G	SNP	EOMES	ENST00000461503	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	EOMES	HGNC	ENSG00000163508				10	0	0	6	4	40
GOLGA4	0	genome.wustl.edu	37	3	37368531	37368531	+	Silent	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	37368531	37368531	T	C	SNP	GOLGA4	ENST00000361924	human	ensembl	74_37	+1	known	silent	c.5154	p.Y1718	0.000	NULL	pfam_GRIP,superfamily_GRIP,superfamily_tRNA-bd_arm,superfamily_t-SNARE,superfamily_Prefoldin,smart_GRIP,pfscan_GRIP	-	no_errors	GOLGA4	HGNC	ENSG00000144674				254	0	0	263	53	16.7722
XYLB	0	genome.wustl.edu	37	3	38438615	38438615	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	38438615	38438615	C	T	SNP	XYLB	ENST00000207870	human	ensembl	74_37	+1	known	missense	c.1403	p.S468L	0.984	pfam_Carb_kinase_FGGY_C	pfam_Carb_kinase_FGGY_C,pfam_Carb_kinase_FGGY_N	-	no_errors	XYLB	HGNC	ENSG00000093217				75	0	0	65	13	16.6667
TGM4	0	genome.wustl.edu	37	3	44943299	44943299	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	44943299	44943299	G	T	SNP	TGM4	ENST00000296125	human	ensembl	74_37	+1	known	missense	c.847	p.G283C	1.000	pfam_Transglutaminase-like,smart_Transglutaminase-like	pfam_Transglutaminase_N,pfam_Transglutaminase_C,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM4	HGNC	ENSG00000163810				42	0	0	44	7	13.7255
FYCO1	0	genome.wustl.edu	37	3	46009351	46009351	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	46009351	46009351	C	T	SNP	FYCO1	ENST00000535325	human	ensembl	74_37	-1	known	missense	c.1475	p.R492Q	0.000	superfamily_Prefoldin	pfam_Znf_FYVE,pfam_Run,superfamily_GOLD,superfamily_Znf_FYVE_PHD,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Znf_FYVE,pfscan_GOLD,pfscan_Run,pfscan_Znf_FYVE-rel	-	no_errors	FYCO1	HGNC	ENSG00000163820				116	0	0	99	7	6.60377
CCR3	0	genome.wustl.edu	37	3	46306704	46306704	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	46306704	46306704	G	A	SNP	CCR3	ENST00000545097	human	ensembl	74_37	+1	known	missense	c.118	p.D40N	0.003	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Chemokine_CCR3,prints_Chemokine_CCR1	-	no_errors	CCR3	HGNC	ENSG00000183625				48	0	0	38	7	15.5556
CELSR3	0	genome.wustl.edu	37	3	48699642	48699642	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	48699642	48699642	G	A	SNP	CELSR3	ENST00000544264	human	ensembl	74_37	-1	known	silent	c.426	p.C142	0.026	NULL	pfam_Cadherin,pfam_GPCR_2_secretin-like,pfam_Laminin_G,pfam_DUF3497,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR3	HGNC	ENSG00000008300				98	0	0	76	14	15.5556
QARS	0	genome.wustl.edu	37	3	49139862	49139862	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	49139862	49139862	T	C	SNP	QARS	ENST00000306125	human	ensembl	74_37	-1	known	missense	c.560	p.K187R	1.000	pfam_Gln-tRNA-synth_Ib_RNA-bd_2	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,pfam_Gln-tRNA-synth_Ib_RNA-bd_N,pfam_Glu/Gln-tRNA-synth_Ib_codon-bd,pfam_Gln-tRNA-synth_Ib_RNA-bd_2,superfamily_Ribosomal_L25/Gln-tRNA_synth,prints_Glu/Gln-tRNA-synth,tigrfam_Gln-tRNA-synth	-	no_errors	QARS	HGNC	ENSG00000172053				88	0	0	100	17	14.5299
BSN	0	genome.wustl.edu	37	3	49688509	49688509	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	49688509	49688509	G	A	SNP	BSN	ENST00000296452	human	ensembl	74_37	+1	known	silent	c.1983	p.A661	0.064	NULL	pfam_Znf_piccolo,superfamily_Znf_FYVE_PHD	-	no_errors	BSN	HGNC	ENSG00000164061				55	0	0	62	8	11.4286
BSN	0	genome.wustl.edu	37	3	49694676	49694676	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	49694676	49694676	C	T	SNP	BSN	ENST00000296452	human	ensembl	74_37	+1	known	missense	c.7687	p.R2563W	0.986	NULL	pfam_Znf_piccolo,superfamily_Znf_FYVE_PHD	-	no_errors	BSN	HGNC	ENSG00000164061				37	0	0	22	4	15.3846
MON1A	0	genome.wustl.edu	37	3	49947986	49947986	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	49947986	49947986	C	T	SNP	MON1A	ENST00000296473	human	ensembl	74_37	-1	known	silent	c.1236	p.A412	0.998	pfam_Vacuolar_fusion_protein_MON1,prints_Vacuolar_fusion_protein_MON1	pfam_Vacuolar_fusion_protein_MON1,superfamily_Longin-like_dom,prints_Vacuolar_fusion_protein_MON1	-	no_errors	MON1A	HGNC	ENSG00000164077				14	0	0	25	9	26.4706
NISCH	0	genome.wustl.edu	37	3	52521801	52521801	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	52521801	52521801	C	T	SNP	NISCH	ENST00000345716	human	ensembl	74_37	+1	known	missense	c.2293	p.H765Y	0.061	NULL	pfam_Phox,pfam_Leu-rich_rpt,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	NISCH	HGNC	ENSG00000010322				44	0	0	53	9	14.5161
NT5DC2	0	genome.wustl.edu	37	3	52559266	52559266	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	52559266	52559266	G	A	SNP	NT5DC2	ENST00000422318	human	ensembl	74_37	-1	known	missense	c.1165	p.R389C	0.988	pfam_HAD-SF_hydro_IG_5-nucl,superfamily_HAD-like_dom,pirsf_Pur_nucleotidase,tigrfam_HAD-SF_hydro_IG_5-nucl	pfam_HAD-SF_hydro_IG_5-nucl,superfamily_HAD-like_dom,pirsf_Pur_nucleotidase,tigrfam_HAD-SF_hydro_IG_5-nucl	-	no_errors	NT5DC2	HGNC	ENSG00000168268				30	0	0	19	3	13.6364
PBRM1	0	genome.wustl.edu	37	3	52595943	52595943	+	Silent	SNP	G	G	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	52595943	52595943	G	T	SNP	PBRM1	ENST00000296302	human	ensembl	74_37	-1	known	silent	c.4128	p.G1376	1.000	superfamily_HMG_box_dom	pfam_Bromodomain,pfam_BAH_dom,pfam_HMG_box_dom,superfamily_Bromodomain,superfamily_HMG_box_dom,smart_Bromodomain,smart_BAH_dom,smart_HMG_box_dom,pfscan_BAH_dom,pfscan_HMG_box_dom,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	PBRM1	HGNC	ENSG00000163939				121	0	0	109	29	21.0145
IL17RB	0	genome.wustl.edu	37	3	53899191	53899191	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	53899191	53899191	C	T	SNP	IL17RB	ENST00000288167	human	ensembl	74_37	+1	known	silent	c.1365	p.D455	0.000	pfam_SEFIR	pfam_SEFIR	-	no_errors	IL17RB	HGNC	ENSG00000056736				77	0	0	73	13	15.1163
LRTM1	0	genome.wustl.edu	37	3	54952709	54952709	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	54952709	54952709	T	A	SNP	LRTM1	ENST00000273286	human	ensembl	74_37	-1	known	missense	c.815	p.E272V	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRTM1	HGNC	ENSG00000144771				57	0	0	62	7	10.1449
LRIG1	0	genome.wustl.edu	37	3	66467669	66467669	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	66467669	66467669	G	A	SNP	LRIG1	ENST00000273261	human	ensembl	74_37	-1	known	silent	c.387	p.S129	0.013	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Cys-rich_flank_reg_C,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRIG1	HGNC	ENSG00000144749				210	0	0	164	34	17.1717
KBTBD8	0	genome.wustl.edu	37	3	67053771	67053771	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	67053771	67053771	C	T	SNP	KBTBD8	ENST00000417314	human	ensembl	74_37	+1	known	missense	c.380	p.A127V	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin	pfam_BACK,pfam_BTB_POZ,pfam_Kelch_1,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KBTBD8	HGNC	ENSG00000163376				163	0	0	138	22	13.75
GXYLT2	0	genome.wustl.edu	37	3	72971426	72971426	+	Silent	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	72971426	72971426	A	G	SNP	GXYLT2	ENST00000389617	human	ensembl	74_37	+1	known	silent	c.540	p.G180	1.000	pfam_Glyco_trans_8	pfam_Glyco_trans_8	-	no_errors	GXYLT2	HGNC	ENSG00000172986				182	0	0	178	36	16.8224
CNTN3	0	genome.wustl.edu	37	3	74420384	74420384	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	74420384	74420384	C	T	SNP	CNTN3	ENST00000263665	human	ensembl	74_37	-1	known	silent	c.621	p.V207	0.000	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN3	HGNC	ENSG00000113805				43	0	0	50	8	13.7931
EPHA3	0	genome.wustl.edu	37	3	89499360	89499360	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	89499360	89499360	C	T	SNP	EPHA3	ENST00000336596	human	ensembl	74_37	+1	known	missense	c.2530	p.P844S	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA3	HGNC	ENSG00000044524				54	0	0	41	6	12.766
SRGAP3	0	genome.wustl.edu	37	3	9034632	9034632	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	9034632	9034632	G	A	SNP	SRGAP3	ENST00000383836	human	ensembl	74_37	-1	known	missense	c.2516	p.T839M	0.997	superfamily_SH3_domain	pfam_RhoGAP_dom,pfam_FCH_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_FCH_dom,smart_RhoGAP_dom,smart_SH3_domain,pfscan_FCH_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	SRGAP3	HGNC	ENSG00000196220				110	0	0	72	11	13.253
SETD5	0	genome.wustl.edu	37	3	9483295	9483295	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	9483295	9483295	A	G	SNP	SETD5	ENST00000402198	human	ensembl	74_37	+1	known	missense	c.829	p.T277A	1.000	smart_SET_dom	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	-	no_errors	SETD5	HGNC	ENSG00000168137				197	0	0	183	35	16.055
MTTP	0	genome.wustl.edu	37	4	100530094	100530094	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	100530094	100530094	G	A	SNP	MTTP	ENST00000265517	human	ensembl	74_37	+1	known	missense	c.1729	p.A577T	0.000	superfamily_Vitellinogen_superhlx,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	pfam_Lipid_transpt_N,superfamily_Vitellinogen_superhlx,superfamily_Lipid_transp_b-sht_shell,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	MTTP	HGNC	ENSG00000138823				116	0	0	114	21	15.5556
ZNF518B	0	genome.wustl.edu	37	4	10446426	10446426	+	Silent	SNP	A	A	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	10446426	10446426	A	C	SNP	ZNF518B	ENST00000326756	human	ensembl	74_37	-1	known	silent	c.1527	p.A509	0.581	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF518B	HGNC	ENSG00000178163				107	0	0	110	19	14.7287
CYP2U1	0	genome.wustl.edu	37	4	108870669	108870669	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	108870669	108870669	G	A	SNP	CYP2U1	ENST00000332884	human	ensembl	74_37	+1	known	silent	c.1452	p.G484	0.994	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_B	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_B,prints_Cyt_P450_E_grp-I_CYP2D-like	-	no_errors	CYP2U1	HGNC	ENSG00000155016				40	0	0	38	6	13.6364
CFI	0	genome.wustl.edu	37	4	110673647	110673647	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	110673647	110673647	A	T	SNP	CFI	ENST00000394634	human	ensembl	74_37	-1	known	missense	c.917	p.I306N	0.036	superfamily_LDrepeatLR_classA_rpt	pfam_Peptidase_S1,pfam_LDrepeatLR_classA_rpt,pfam_SRCR,superfamily_Trypsin-like_Pept_dom,superfamily_Srcr_rcpt-rel,superfamily_LDrepeatLR_classA_rpt,smart_FacI_MAC,smart_Srcr_rcpt-rel,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1,pfscan_LDrepeatLR_classA_rpt,pfscan_SRCR,pfscan_Peptidase_S1,prints_Peptidase_S1A,prints_LDrepeatLR_classA_rpt	-	no_errors	CFI	HGNC	ENSG00000205403				47	0	0	53	9	14.5161
PITX2	0	genome.wustl.edu	37	4	111539779	111539779	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	111539779	111539779	G	A	SNP	PITX2	ENST00000394595	human	ensembl	74_37	-1	novel	nonsense	c.250	p.Q84*	1.000	NULL	NULL	-	no_errors	PITX2	HGNC	ENSG00000164093				109	1	0.909091	76	7	8.43373
UGT8	0	genome.wustl.edu	37	4	115597196	115597196	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	115597196	115597196	C	A	SNP	UGT8	ENST00000310836	human	ensembl	74_37	+1	known	missense	c.1378	p.L460I	1.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT8	HGNC	ENSG00000174607				108	0	0	127	17	11.8056
FAT4	0	genome.wustl.edu	37	4	126328260	126328260	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	126328260	126328260	G	A	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	missense	c.5533	p.V1845M	0.949	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				147	0	0	136	31	18.5629
FAT4	0	genome.wustl.edu	37	4	126411935	126411935	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	126411935	126411935	G	T	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	missense	c.13958	p.R4653M	1.000	NULL	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				63	0	0	75	15	16.6667
HSPA4L	0	genome.wustl.edu	37	4	128739575	128739575	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	128739575	128739575	G	T	SNP	HSPA4L	ENST00000439123	human	ensembl	74_37	+1	known	missense	c.1767	p.K589N	1.000	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA4L	HGNC	ENSG00000164070				67	0	0	61	5	7.57576
BOD1L1	0	genome.wustl.edu	37	4	13604645	13604645	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	13604645	13604645	C	A	SNP	BOD1L1	ENST00000040738	human	ensembl	74_37	-1	known	missense	c.3879	p.R1293S	0.025	NULL	NULL	-	no_errors	BOD1L1	HGNC	ENSG00000038219				62	0	0	65	14	17.7215
UVSSA	0	genome.wustl.edu	37	4	1373950	1373950	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	1373950	1373950	C	T	SNP	UVSSA	ENST00000389851	human	ensembl	74_37	+1	known	missense	c.1684	p.P562S	0.998	pfam_DUF2043	pfam_DUF2043,superfamily_ENTH_VHS	-	no_errors	UVSSA	HGNC	ENSG00000163945				25	0	0	15	7	31.8182
ABCE1	0	genome.wustl.edu	37	4	146033457	146033457	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	146033457	146033457	A	G	SNP	ABCE1	ENST00000296577	human	ensembl	74_37	+1	known	missense	c.777	p.I259M	0.997	superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,pfam_RNaseL-inhib_metal-bd_dom,pfam_4Fe4S-bd_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,prints_ABC_E	-	no_errors	ABCE1	HGNC	ENSG00000164163				19	0	0	17	2	10.5263
ZNF827	0	genome.wustl.edu	37	4	146807029	146807029	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	146807029	146807029	G	A	SNP	ZNF827	ENST00000508784	human	ensembl	74_37	-1	known	silent	c.1548	p.G516	0.539	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF827	HGNC	ENSG00000151612				69	0	0	65	12	15.5844
NR3C2	0	genome.wustl.edu	37	4	149002580	149002580	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	149002580	149002580	G	A	SNP	NR3C2	ENST00000355292	human	ensembl	74_37	-1	known	missense	c.2882	p.P961L	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR3C2	HGNC	ENSG00000151623				66	0	0	44	12	21.4286
CPEB2	0	genome.wustl.edu	37	4	15009022	15009022	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	15009022	15009022	C	T	SNP	CPEB2	ENST00000538197	human	ensembl	74_37	+1	known	missense	c.1756	p.R586C	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CPEB2	HGNC	ENSG00000137449				82	0	0	88	15	14.5631
DCLK2	0	genome.wustl.edu	37	4	151023845	151023845	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	151023845	151023845	C	T	SNP	DCLK2	ENST00000302176	human	ensembl	74_37	+1	known	missense	c.637	p.R213W	1.000	smart_Doublecortin_dom,pfscan_Doublecortin_dom	pfam_Prot_kinase_dom,pfam_Doublecortin_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Doublecortin_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Doublecortin_dom,pfscan_Prot_kinase_dom	-	no_errors	DCLK2	HGNC	ENSG00000170390				56	0	0	56	4	6.66667
DCLK2	0	genome.wustl.edu	37	4	151114360	151114360	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	151114360	151114360	A	G	SNP	DCLK2	ENST00000302176	human	ensembl	74_37	+1	known	missense	c.827	p.Y276C	1.000	smart_Doublecortin_dom,pfscan_Doublecortin_dom	pfam_Prot_kinase_dom,pfam_Doublecortin_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Doublecortin_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Doublecortin_dom,pfscan_Prot_kinase_dom	-	no_errors	DCLK2	HGNC	ENSG00000170390				124	0	0	116	18	13.4328
FBXW7	0	genome.wustl.edu	37	4	153247366	153247366	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	153247366	153247366	C	T	SNP	FBXW7	ENST00000281708	human	ensembl	74_37	-1	known	missense	c.1436	p.R479Q	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	pfam_WD40_repeat,pfam_F-box_dom,superfamily_WD40_repeat_dom,superfamily_F-box_dom,smart_F-box_dom,smart_WD40_repeat,pfscan_F-box_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	FBXW7	HGNC	ENSG00000109670				83	0	0	80	12	13.0435
FHDC1	0	genome.wustl.edu	37	4	153897541	153897541	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	153897541	153897541	C	T	SNP	FHDC1	ENST00000260008	human	ensembl	74_37	+1	known	missense	c.3098	p.P1033L	1.000	NULL	pfam_FH2_Formin,smart_FH2_Formin	-	no_errors	FHDC1	HGNC	ENSG00000137460				65	0	0	70	13	15.6627
PPID	0	genome.wustl.edu	37	4	159630906	159630906	+	Silent	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	159630906	159630906	A	G	SNP	PPID	ENST00000307720	human	ensembl	74_37	-1	known	silent	c.1095	p.Y365	1.000	NULL	pfam_Cyclophilin-like_PPIase_dom,pfam_TPR_1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPID	HGNC	ENSG00000171497				42	0	0	40	9	18.3673
RAPGEF2	0	genome.wustl.edu	37	4	160253767	160253767	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	160253767	160253767	G	A	SNP	RAPGEF2	ENST00000264431	human	ensembl	74_37	+1	known	missense	c.1570	p.A524T	1.000	superfamily_Ras_GEF_dom	pfam_RasGRF_CDC25,pfam_Ras-assoc,pfam_Ras-like_Gua-exchang_fac_N,pfam_PDZ,pfam_cNMP-bd_dom,superfamily_Ras_GEF_dom,superfamily_PDZ,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ras-like_Gua-exchang_fac_N,smart_PDZ,smart_Ras-assoc,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_PDZ,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF2	HGNC	ENSG00000109756				65	0	0	88	6	6.38298
FSTL5	0	genome.wustl.edu	37	4	162307355	162307355	+	Silent	SNP	A	A	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	162307355	162307355	A	T	SNP	FSTL5	ENST00000306100	human	ensembl	74_37	-1	known	silent	c.2088	p.T696	0.916	NULL	pfam_Ig_I-set,pfam_Kazal_dom,pfam_Ig_V-set,smart_Kazal_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_EF_hand_dom,pfscan_Ig-like_dom	-	no_errors	FSTL5	HGNC	ENSG00000168843				82	0	0	69	18	20.6897
MFAP3L	0	genome.wustl.edu	37	4	170926737	170926737	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	170926737	170926737	C	T	SNP	MFAP3L	ENST00000361618	human	ensembl	74_37	-1	known	missense	c.292	p.G98R	0.540	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MFAP3L	HGNC	ENSG00000198948				164	0	0	138	22	13.75
AADAT	0	genome.wustl.edu	37	4	171008379	171008379	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	171008379	171008379	C	A	SNP	AADAT	ENST00000509167	human	ensembl	74_37	-1	known	missense	c.269	p.W90L	1.000	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	-	no_errors	AADAT	HGNC	ENSG00000109576				69	0	0	61	9	12.8571
DCAF16	0	genome.wustl.edu	37	4	17805438	17805438	+	Silent	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	17805438	17805438	T	C	SNP	DCAF16	ENST00000382247	human	ensembl	74_37	-1	known	silent	c.327	p.P109	1.000	NULL	NULL	-	no_errors	DCAF16	HGNC	ENSG00000163257				165	1	0.60241	144	24	14.2857
SORBS2	0	genome.wustl.edu	37	4	186545449	186545449	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	186545449	186545449	G	A	SNP	SORBS2	ENST00000284776	human	ensembl	74_37	-1	known	silent	c.1122	p.T374	0.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Sorb,superfamily_SH3_domain,smart_Sorb,smart_SH3_domain,pfscan_Sorb,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox	-	no_errors	SORBS2	HGNC	ENSG00000154556				49	0	0	50	8	13.7931
FAT1	0	genome.wustl.edu	37	4	187524858	187524858	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	187524858	187524858	C	A	SNP	FAT1	ENST00000441802	human	ensembl	74_37	-1	known	missense	c.10822	p.G3608W	0.998	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857				71	0	0	65	13	16.6667
ZFP42	0	genome.wustl.edu	37	4	188924151	188924151	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	188924151	188924151	G	A	SNP	ZFP42	ENST00000326866	human	ensembl	74_37	+1	known	missense	c.190	p.G64R	0.001	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP42	HGNC	ENSG00000179059				72	0	0	67	11	14.1026
PCDH7	0	genome.wustl.edu	37	4	30724560	30724560	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	30724560	30724560	G	A	SNP	PCDH7	ENST00000543491	human	ensembl	74_37	+1	known	missense	c.1516	p.V506M	0.999	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH7	HGNC	ENSG00000169851				48	0	0	42	5	10.6383
HTT	0	genome.wustl.edu	37	4	3224185	3224185	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	3224185	3224185	G	A	SNP	HTT	ENST00000355072	human	ensembl	74_37	+1	known	missense	c.7441	p.V2481M	0.944	NULL	pfam_Huntingtin_middle-repeat,pfam_HEAT,superfamily_ARM-type_fold,prints_Huntingtin	-	no_errors	HTT	HGNC	ENSG00000197386				40	0	0	37	7	15.9091
WDR19	0	genome.wustl.edu	37	4	39254779	39254779	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	39254779	39254779	G	C	SNP	WDR19	ENST00000399820	human	ensembl	74_37	+1	known	missense	c.2743	p.V915L	0.997	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR19	HGNC	ENSG00000157796				78	0	0	93	17	15.4545
APBB2	0	genome.wustl.edu	37	4	40827943	40827943	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	40827943	40827943	C	T	SNP	APBB2	ENST00000295974	human	ensembl	74_37	-1	known	missense	c.1774	p.V592M	1.000	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	pfam_PTB/PI_dom,pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom,pfscan_WW_dom	-	no_errors	APBB2	HGNC	ENSG00000163697				107	0	0	116	20	14.7059
APBB2	0	genome.wustl.edu	37	4	40832595	40832595	+	Splice_Site	SNP	C	C	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	40832595	40832595	C	A	SNP	APBB2	ENST00000295974	human	ensembl	74_37	-1	known	splice_site	c.1527-1	e9-1	1.000	-	-	-	no_errors	APBB2	HGNC	ENSG00000163697				53	0	0	35	8	18.6047
GUF1	0	genome.wustl.edu	37	4	44699460	44699460	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	44699460	44699460	G	A	SNP	GUF1	ENST00000281543	human	ensembl	74_37	+1	known	missense	c.1871	p.C624Y	1.000	pfam_LepA_GTP-bd_C,tigrfam_EF-4	pfam_EF_GTP-bd_dom,pfam_LepA_GTP-bd_C,pfam_EFG_V,pfam_Transl_elong_EFTu/EF1A_2,pfam_Small_GTPase,superfamily_P-loop_NTPase,superfamily_EFG_III-V,superfamily_Transl_B-barrel,prints_EF_GTP-bd_dom,tigrfam_EF-4,tigrfam_Small_GTP-bd_dom	-	no_errors	GUF1	HGNC	ENSG00000151806				44	0	0	94	11	10.4762
FRYL	0	genome.wustl.edu	37	4	48559087	48559087	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	48559087	48559087	G	A	SNP	FRYL	ENST00000358350	human	ensembl	74_37	-1	known	missense	c.4174	p.L1392F	0.811	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FRYL	HGNC	ENSG00000075539				50	0	0	52	8	13.3333
EVC2	0	genome.wustl.edu	37	4	5567005	5567005	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	5567005	5567005	C	A	SNP	EVC2	ENST00000344408	human	ensembl	74_37	-1	known	missense	c.3639	p.W1213C	0.691	NULL	pfam_Limbin	-	no_errors	EVC2	HGNC	ENSG00000173040				90	0	0	83	9	9.78261
KDR	0	genome.wustl.edu	37	4	55958789	55958789	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	55958789	55958789	G	A	SNP	KDR	ENST00000263923	human	ensembl	74_37	-1	known	nonsense	c.3064	p.R1022*	0.978	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_VEGFR2_rcpt	-	no_errors	KDR	HGNC	ENSG00000128052				46	0	0	58	7	10.7692
ENAM	0	genome.wustl.edu	37	4	71508780	71508780	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	71508780	71508780	C	T	SNP	ENAM	ENST00000396073	human	ensembl	74_37	+1	known	missense	c.1637	p.A546V	0.888	NULL	NULL	-	no_errors	ENAM	HGNC	ENSG00000132464				189	0	0	230	34	12.8788
ENAM	0	genome.wustl.edu	37	4	71509090	71509090	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	71509090	71509090	C	T	SNP	ENAM	ENST00000396073	human	ensembl	74_37	+1	known	silent	c.1947	p.V649	0.001	NULL	NULL	-	no_errors	ENAM	HGNC	ENSG00000132464				196	0	0	239	36	13.0909
ENAM	0	genome.wustl.edu	37	4	71509960	71509960	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	71509960	71509960	G	T	SNP	ENAM	ENST00000396073	human	ensembl	74_37	+1	known	missense	c.2817	p.R939S	0.043	NULL	NULL	-	no_errors	ENAM	HGNC	ENSG00000132464				118	0	0	111	17	13.2812
G3BP2	0	genome.wustl.edu	37	4	76587173	76587173	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	76587173	76587173	G	A	SNP	G3BP2	ENST00000359707	human	ensembl	74_37	-1	known	missense	c.37	p.R13W	1.000	pfam_NTF2,pfscan_Nuclear_transport_factor_2_euk	pfam_NTF2,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	G3BP2	HGNC	ENSG00000138757				65	0	0	58	12	17.1429
CCDC158	0	genome.wustl.edu	37	4	77283437	77283437	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	77283437	77283437	C	T	SNP	CCDC158	ENST00000388914	human	ensembl	74_37	-1	known	missense	c.1862	p.R621Q	1.000	NULL	superfamily_Prefoldin	-	no_errors	CCDC158	HGNC	ENSG00000163749				110	0	0	119	19	13.7681
SOWAHB	0	genome.wustl.edu	37	4	77816758	77816758	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	77816758	77816758	T	G	SNP	SOWAHB	ENST00000334306	human	ensembl	74_37	-1	known	missense	c.2245	p.S749R	0.998	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	SOWAHB	HGNC	ENSG00000186212				319	1	0.3125	317	40	11.2045
MIR95	0	genome.wustl.edu	37	4	8007067	8007067	+	RNA	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	8007067	8007067	G	A	SNP	MIR95	ENST00000385072	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.835	-	-	-	no_errors	MIR95	HGNC	ENSG00000207807				69	0	0	43	9	17.3077
WDFY3	0	genome.wustl.edu	37	4	85645698	85645698	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	85645698	85645698	T	C	SNP	WDFY3	ENST00000295888	human	ensembl	74_37	-1	known	missense	c.7322	p.Y2441C	1.000	NULL	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl_sf,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625				56	0	0	75	16	17.5824
PTPN13	0	genome.wustl.edu	37	4	87680177	87680177	+	Silent	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	87680177	87680177	T	C	SNP	PTPN13	ENST00000436978	human	ensembl	74_37	+1	known	silent	c.3504	p.P1168	0.980	pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,superfamily_PAZ_dom,smart_KIND,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN13	HGNC	ENSG00000163629				54	0	0	53	6	10.1695
KLHL8	0	genome.wustl.edu	37	4	88104415	88104415	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	88104415	88104415	T	C	SNP	KLHL8	ENST00000273963	human	ensembl	74_37	-1	known	missense	c.892	p.S298G	1.000	pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_Kelch_2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL8	HGNC	ENSG00000145332				95	0	0	127	15	10.5634
IBSP	0	genome.wustl.edu	37	4	88732603	88732603	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	88732603	88732603	C	T	SNP	IBSP	ENST00000226284	human	ensembl	74_37	+1	known	silent	c.495	p.S165	0.693	pfam_BSP_II	pfam_BSP_II	-	no_errors	IBSP	HGNC	ENSG00000029559				57	0	0	48	14	22.5806
DRD5	0	genome.wustl.edu	37	4	9783925	9783925	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	9783925	9783925	C	T	SNP	DRD5	ENST00000304374	human	ensembl	74_37	+1	known	missense	c.272	p.A91V	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Dopamine_D5_rcpt,prints_Dopamine_rcpt	-	no_errors	DRD5	HGNC	ENSG00000169676				47	0	0	48	5	9.43396
TSPAN5	0	genome.wustl.edu	37	4	99407915	99407915	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	99407915	99407915	G	A	SNP	TSPAN5	ENST00000305798	human	ensembl	74_37	-1	known	missense	c.253	p.R85W	0.934	pfam_Tetraspanin/Peripherin,prints_Tetraspanin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN5	HGNC	ENSG00000168785				129	0	0	141	18	11.3208
ST8SIA4	0	genome.wustl.edu	37	5	100191911	100191911	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	100191911	100191911	T	G	SNP	ST8SIA4	ENST00000231461	human	ensembl	74_37	-1	known	missense	c.693	p.K231N	1.000	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST8SIA4	HGNC	ENSG00000113532				124	0	0	146	26	15.1163
YTHDC2	0	genome.wustl.edu	37	5	112862461	112862461	+	Silent	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	112862461	112862461	T	C	SNP	YTHDC2	ENST00000161863	human	ensembl	74_37	+1	known	silent	c.654	p.T218	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_YTH_domain,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_DUF1605,pfam_R3H_ss-bd,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_R3H_ss-bd,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_R3H_ss-bd,pfscan_YTH_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	YTHDC2	HGNC	ENSG00000047188				47	0	0	76	11	12.6437
YTHDC2	0	genome.wustl.edu	37	5	112896840	112896840	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	112896840	112896840	G	A	SNP	YTHDC2	ENST00000161863	human	ensembl	74_37	+1	known	missense	c.2280	p.M760I	1.000	superfamily_P-loop_NTPase,pfscan_Helicase_C	pfam_YTH_domain,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_DUF1605,pfam_R3H_ss-bd,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_R3H_ss-bd,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_R3H_ss-bd,pfscan_YTH_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	YTHDC2	HGNC	ENSG00000047188				29	0	0	38	4	9.52381
CTNND2	0	genome.wustl.edu	37	5	11364843	11364843	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	11364843	11364843	G	A	SNP	CTNND2	ENST00000304623	human	ensembl	74_37	-1	known	missense	c.1337	p.P446L	1.000	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND2	HGNC	ENSG00000169862				28	0	0	18	5	21.7391
LMNB1	0	genome.wustl.edu	37	5	126168436	126168436	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	126168436	126168436	G	A	SNP	LMNB1	ENST00000261366	human	ensembl	74_37	+1	known	silent	c.1662	p.E554	0.038	NULL	pfam_IF,pfam_Lamin_tail_dom	-	no_errors	LMNB1	HGNC	ENSG00000113368				51	0	0	74	14	15.9091
FBN2	0	genome.wustl.edu	37	5	127599223	127599223	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	127599223	127599223	C	T	SNP	FBN2	ENST00000262464	human	ensembl	74_37	-1	known	missense	c.8086	p.V2696M	1.000	pirsf_FBN,pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	pirsf_FBN,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Cadherin-like,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	FBN2	HGNC	ENSG00000138829				101	0	0	91	12	11.6505
SLC27A6	0	genome.wustl.edu	37	5	128365383	128365383	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	128365383	128365383	C	T	SNP	SLC27A6	ENST00000262462	human	ensembl	74_37	+1	known	nonsense	c.1666	p.R556*	0.095	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	SLC27A6	HGNC	ENSG00000113396				36	0	0	39	5	11.3636
SLC22A4	0	genome.wustl.edu	37	5	131647935	131647935	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	131647935	131647935	G	A	SNP	SLC22A4	ENST00000200652	human	ensembl	74_37	+1	known	missense	c.475	p.V159M	0.293	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A4	HGNC	ENSG00000197208				130	0	0	130	22	14.4737
PCBD2	0	genome.wustl.edu	37	5	134246093	134246093	+	Silent	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	134246093	134246093	A	G	SNP	PCBD2	ENST00000254908	human	ensembl	74_37	+1	known	silent	c.153	p.G51	0.998	pfam_Trans/pterin_deHydtase,superfamily_Trans/pterin_deHydtase	pfam_Trans/pterin_deHydtase,superfamily_Trans/pterin_deHydtase	-	no_errors	PCBD2	HGNC	ENSG00000132570				65	0	0	86	7	7.52688
DNAJC18	0	genome.wustl.edu	37	5	138758500	138758500	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	138758500	138758500	A	G	SNP	DNAJC18	ENST00000302060	human	ensembl	74_37	-1	known	missense	c.676	p.Y226H	0.996	NULL	pfam_DUF1977_DnaJ-like,pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJC18	HGNC	ENSG00000170464				61	0	0	59	20	25.3165
NRG2	0	genome.wustl.edu	37	5	139260458	139260458	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	139260458	139260458	C	T	SNP	NRG2	ENST00000545385	human	ensembl	74_37	-1	known	missense	c.974	p.R325Q	1.000	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Neuregulin_1_C,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_EG-like_dom,pfscan_Ig-like_dom	-	no_errors	NRG2	HGNC	ENSG00000158458				62	0	0	36	7	16.2791
PCDHA1	0	genome.wustl.edu	37	5	140167635	140167635	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	140167635	140167635	C	T	SNP	PCDHA1	ENST00000504120	human	ensembl	74_37	+1	known	missense	c.1760	p.A587V	0.258	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA1	HGNC	ENSG00000204970				108	1	0.917431	70	14	16.6667
PCDHA3	0	genome.wustl.edu	37	5	140180846	140180846	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	140180846	140180846	G	A	SNP	PCDHA3	ENST00000522353	human	ensembl	74_37	+1	known	missense	c.64	p.A22T	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA3	HGNC	ENSG00000255408				48	0	0	44	6	12
PCDHA8	0	genome.wustl.edu	37	5	140222221	140222221	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	140222221	140222221	G	A	SNP	PCDHA8	ENST00000531613	human	ensembl	74_37	+1	known	missense	c.1315	p.A439T	0.044	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA8	HGNC	ENSG00000204962				82	0	0	49	8	14.0351
PCDHA12	0	genome.wustl.edu	37	5	140256301	140256301	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	140256301	140256301	G	A	SNP	PCDHA12	ENST00000398631	human	ensembl	74_37	+1	known	missense	c.1244	p.R415H	0.995	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA12	HGNC	ENSG00000251664				231	1	0.431034	179	22	10.9453
PCDHB2	0	genome.wustl.edu	37	5	140474624	140474624	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	140474624	140474624	G	A	SNP	PCDHB2	ENST00000194155	human	ensembl	74_37	+1	known	missense	c.250	p.G84R	0.997	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB2	HGNC	ENSG00000112852				94	0	0	89	12	11.8812
PCDHB7	0	genome.wustl.edu	37	5	140554636	140554636	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	140554636	140554636	C	T	SNP	PCDHB7	ENST00000231137	human	ensembl	74_37	+1	known	silent	c.2220	p.T740	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB7	HGNC	ENSG00000113212				203	0	0	153	10	6.13497
PCDHB8	0	genome.wustl.edu	37	5	140558582	140558582	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	140558582	140558582	A	G	SNP	PCDHB8	ENST00000239444	human	ensembl	74_37	+1	known	missense	c.967	p.R323G	0.255	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB8	HGNC	ENSG00000120322				326	0	0	316	19	5.67164
PCDHB14	0	genome.wustl.edu	37	5	140604658	140604658	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	140604658	140604658	C	T	SNP	PCDHB14	ENST00000239449	human	ensembl	74_37	+1	known	silent	c.1581	p.F527	0.742	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB14	HGNC	ENSG00000120327				127	0	0	76	10	11.6279
PCDHGA1	0	genome.wustl.edu	37	5	140711018	140711018	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	140711018	140711018	C	A	SNP	PCDHGA1	ENST00000517417	human	ensembl	74_37	+1	known	missense	c.767	p.P256Q	0.205	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA1	HGNC	ENSG00000204956				69	0	0	72	19	20.8791
PCDHGA6	0	genome.wustl.edu	37	5	140753898	140753898	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	140753898	140753898	G	A	SNP	PCDHGA6	ENST00000517434	human	ensembl	74_37	+1	known	missense	c.248	p.S83N	0.161	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA6	HGNC	ENSG00000253731				103	0	0	87	20	18.6916
PCDHGB6	0	genome.wustl.edu	37	5	140789013	140789013	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	140789013	140789013	C	T	SNP	PCDHGB6	ENST00000520790	human	ensembl	74_37	+1	known	missense	c.1244	p.T415I	0.001	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB6	HGNC	ENSG00000253305				69	0	0	65	7	9.72222
PCDHGB7	0	genome.wustl.edu	37	5	140799786	140799786	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	140799786	140799786	T	C	SNP	PCDHGB7	ENST00000398594	human	ensembl	74_37	+1	known	missense	c.2360	p.L787P	0.014	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB7	HGNC	ENSG00000254122				87	0	0	80	16	16.6667
DIAPH1	0	genome.wustl.edu	37	5	140955848	140955848	+	Silent	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	140955848	140955848	A	G	SNP	DIAPH1	ENST00000253811	human	ensembl	74_37	-1	known	silent	c.1410	p.D470	1.000	superfamily_ARM-type_fold,superfamily_tRNA-bd_arm	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,pfam_Formin_homology_1,pfam_Drf_DAD,superfamily_ARM-type_fold,superfamily_tRNA-bd_arm,smart_FH2_Formin	-	no_errors	DIAPH1	HGNC	ENSG00000131504				79	0	0	81	13	13.8298
KCTD16	0	genome.wustl.edu	37	5	143586874	143586874	+	Silent	SNP	C	C	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	143586874	143586874	C	A	SNP	KCTD16	ENST00000507359	human	ensembl	74_37	+1	known	silent	c.597	p.S199	1.000	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD16	HGNC	ENSG00000183775				68	0	0	66	5	7.04225
TRIO	0	genome.wustl.edu	37	5	14504649	14504649	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	14504649	14504649	C	T	SNP	TRIO	ENST00000344204	human	ensembl	74_37	+1	known	silent	c.8559	p.V2853	0.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382				236	1	0.421941	176	24	12
PLAC8L1	0	genome.wustl.edu	37	5	145483816	145483816	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	145483816	145483816	A	G	SNP	PLAC8L1	ENST00000311450	human	ensembl	74_37	-1	known	missense	c.59	p.I20T	0.000	NULL	pfam_Uncharacterised_Cys-rich,tigrfam_Uncharacterised_Cys-rich	-	no_errors	PLAC8L1	HGNC	ENSG00000173261				57	0	0	58	14	19.4444
SPINK5	0	genome.wustl.edu	37	5	147473990	147473990	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	147473990	147473990	G	A	SNP	SPINK5	ENST00000359874	human	ensembl	74_37	+1	known	missense	c.740	p.R247H	0.999	pfam_Kazal_dom,smart_Kazal_dom	pfam_Kazal_dom,smart_Kazal_dom	-	no_errors	SPINK5	HGNC	ENSG00000133710				119	0	0	159	28	14.9733
SPINK14	0	genome.wustl.edu	37	5	147554938	147554938	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	147554938	147554938	T	C	SNP	SPINK14	ENST00000356972	human	ensembl	74_37	+1	known	missense	c.271	p.F91L	0.005	pfam_Kazal_dom,smart_Kazal_dom	pfam_Kazal_dom,smart_Kazal_dom	-	no_errors	SPINK14	HGNC	ENSG00000196800				29	0	0	34	9	20.9302
FBXO38	0	genome.wustl.edu	37	5	147807289	147807289	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	147807289	147807289	C	T	SNP	FBXO38	ENST00000340253	human	ensembl	74_37	+1	known	missense	c.2432	p.T811M	1.000	NULL	superfamily_F-box_dom	-	no_errors	FBXO38	HGNC	ENSG00000145868				43	0	0	49	3	5.76923
HTR4	0	genome.wustl.edu	37	5	147928374	147928374	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	147928374	147928374	C	T	SNP	HTR4	ENST00000360693	human	ensembl	74_37	-1	known	silent	c.210	p.S70	0.011	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_5HT4_rcpt,prints_GPCR_Rhodpsn	-	no_errors	HTR4	HGNC	ENSG00000164270				85	0	0	70	14	16.6667
SH3TC2	0	genome.wustl.edu	37	5	148392271	148392271	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	148392271	148392271	A	G	SNP	SH3TC2	ENST00000515425	human	ensembl	74_37	-1	known	missense	c.3080	p.I1027T	1.000	NULL	pfam_SH3_domain,pfam_TPR_1,superfamily_SH3_domain,smart_SH3_domain,smart_TPR_repeat,pfscan_SH3_domain	-	no_errors	SH3TC2	HGNC	ENSG00000169247				44	0	0	39	4	9.30233
SH3TC2	0	genome.wustl.edu	37	5	148406142	148406142	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	148406142	148406142	T	C	SNP	SH3TC2	ENST00000515425	human	ensembl	74_37	-1	known	missense	c.3046	p.T1016A	1.000	NULL	pfam_SH3_domain,pfam_TPR_1,superfamily_SH3_domain,smart_SH3_domain,smart_TPR_repeat,pfscan_SH3_domain	-	no_errors	SH3TC2	HGNC	ENSG00000169247				132	0	0	121	25	17.1233
SH3TC2	0	genome.wustl.edu	37	5	148407408	148407408	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	148407408	148407408	G	A	SNP	SH3TC2	ENST00000515425	human	ensembl	74_37	-1	known	silent	c.1887	p.S629	0.000	NULL	pfam_SH3_domain,pfam_TPR_1,superfamily_SH3_domain,smart_SH3_domain,smart_TPR_repeat,pfscan_SH3_domain	-	no_errors	SH3TC2	HGNC	ENSG00000169247				35	0	0	23	6	20.6897
FAT2	0	genome.wustl.edu	37	5	150924599	150924599	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	150924599	150924599	C	T	SNP	FAT2	ENST00000261800	human	ensembl	74_37	-1	known	missense	c.6089	p.R2030Q	0.999	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570				111	0	0	123	15	10.8696
FAT2	0	genome.wustl.edu	37	5	150930358	150930358	+	Silent	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	150930358	150930358	A	G	SNP	FAT2	ENST00000261800	human	ensembl	74_37	-1	known	silent	c.4371	p.V1457	0.865	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570				28	0	0	23	6	20.6897
FAT2	0	genome.wustl.edu	37	5	150945341	150945341	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	150945341	150945341	A	G	SNP	FAT2	ENST00000261800	human	ensembl	74_37	-1	known	missense	c.3152	p.V1051A	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570				55	0	0	41	6	12.766
NMUR2	0	genome.wustl.edu	37	5	151784474	151784474	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	151784474	151784474	G	A	SNP	NMUR2	ENST00000255262	human	ensembl	74_37	-1	known	silent	c.201	p.C67	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_NeuromedU_rcpt_2,prints_NeuromedU_rcpt,prints_GPCR_Rhodpsn	-	no_errors	NMUR2	HGNC	ENSG00000132911				60	0	0	56	8	12.5
RNF145	0	genome.wustl.edu	37	5	158621757	158621757	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	158621757	158621757	G	T	SNP	RNF145	ENST00000518802	human	ensembl	74_37	-1	known	missense	c.350	p.A117D	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF145	HGNC	ENSG00000145860				179	0	0	174	34	16.3462
CCNJL	0	genome.wustl.edu	37	5	159738871	159738871	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	159738871	159738871	G	A	SNP	CCNJL	ENST00000393977	human	ensembl	74_37	-1	known	silent	c.60	p.R20	0.998	superfamily_Cyclin-like	pfam_Cyclin_C-dom,pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNJL	HGNC	ENSG00000135083				62	0	0	48	11	18.6441
MAT2B	0	genome.wustl.edu	37	5	162943622	162943622	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	162943622	162943622	A	G	SNP	MAT2B	ENST00000321757	human	ensembl	74_37	+1	known	missense	c.625	p.K209E	1.000	pfam_dTDP_dehydrorham_reduct,pfam_Epimerase_deHydtase,pfam_3Beta_OHSteriod_DH/Estase	pfam_dTDP_dehydrorham_reduct,pfam_Epimerase_deHydtase,pfam_Polysac_CapD-like,pfam_3Beta_OHSteriod_DH/Estase	-	no_errors	MAT2B	HGNC	ENSG00000038274				68	0	0	73	6	7.59494
ZNF622	0	genome.wustl.edu	37	5	16465635	16465635	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	16465635	16465635	A	G	SNP	ZNF622	ENST00000308683	human	ensembl	74_37	-1	known	missense	c.140	p.F47S	1.000	NULL	pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like	-	no_errors	ZNF622	HGNC	ENSG00000173545				36	0	0	18	5	21.7391
MSX2	0	genome.wustl.edu	37	5	174156184	174156184	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	174156184	174156184	C	T	SNP	MSX2	ENST00000239243	human	ensembl	74_37	+1	known	silent	c.402	p.C134	1.000	superfamily_Homeodomain-like	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	MSX2	HGNC	ENSG00000120149				54	0	0	52	6	10.3448
FGFR4	0	genome.wustl.edu	37	5	176522590	176522590	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	176522590	176522590	C	T	SNP	FGFR4	ENST00000292408	human	ensembl	74_37	+1	known	missense	c.1687	p.R563W	1.000	pirsf_FGF_rcpt_fam,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_FGF_rcpt_fam,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	FGFR4	HGNC	ENSG00000160867				8	0	0	7	3	30
DDX41	0	genome.wustl.edu	37	5	176942974	176942974	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	176942974	176942974	C	A	SNP	DDX41	ENST00000507955	human	ensembl	74_37	-1	known	missense	c.390	p.K130N	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Znf_CCHC,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX41	HGNC	ENSG00000183258				75	0	0	69	14	16.8675
ZFP2	0	genome.wustl.edu	37	5	178359697	178359697	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	178359697	178359697	G	A	SNP	ZFP2	ENST00000361362	human	ensembl	74_37	+1	known	silent	c.1383	p.T461	0.069	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP2	HGNC	ENSG00000198939				72	0	0	62	9	12.6761
ZNF454	0	genome.wustl.edu	37	5	178392951	178392951	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	178392951	178392951	A	G	SNP	ZNF454	ENST00000320129	human	ensembl	74_37	+1	known	missense	c.1546	p.R516G	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF454	HGNC	ENSG00000178187				87	0	0	104	15	12.605
C5orf45	0	genome.wustl.edu	37	5	179271187	179271187	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	179271187	179271187	C	T	SNP	C5orf45	ENST00000292586	human	ensembl	74_37	-1	known	missense	c.256	p.V86M	0.000	NULL	NULL	-	no_errors	C5orf45	HGNC	ENSG00000161010				57	0	0	59	11	15.7143
TBC1D9B	0	genome.wustl.edu	37	5	179290918	179290918	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	179290918	179290918	C	T	SNP	TBC1D9B	ENST00000356834	human	ensembl	74_37	-1	known	missense	c.3283	p.A1095T	0.000	NULL	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_hand_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D9B	HGNC	ENSG00000197226				57	0	0	53	7	11.6667
CDH10	0	genome.wustl.edu	37	5	24537611	24537611	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	24537611	24537611	C	A	SNP	CDH10	ENST00000264463	human	ensembl	74_37	-1	known	missense	c.404	p.R135I	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH10	HGNC	ENSG00000040731				104	0	0	117	19	13.9706
AGXT2	0	genome.wustl.edu	37	5	35025913	35025913	+	Silent	SNP	G	G	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	35025913	35025913	G	T	SNP	AGXT2	ENST00000231420	human	ensembl	74_37	-1	known	silent	c.918	p.A306	0.979	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase	-	no_errors	AGXT2	HGNC	ENSG00000113492				48	0	0	55	11	16.6667
C5orf34	0	genome.wustl.edu	37	5	43488034	43488034	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	43488034	43488034	A	C	SNP	C5orf34	ENST00000306862	human	ensembl	74_37	-1	known	missense	c.1697	p.L566R	1.000	NULL	NULL	-	no_errors	C5orf34	HGNC	ENSG00000172244				37	0	0	20	3	13.0435
HCN1	0	genome.wustl.edu	37	5	45262407	45262407	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	45262407	45262407	C	T	SNP	HCN1	ENST00000303230	human	ensembl	74_37	-1	known	silent	c.2289	p.P763	0.995	NULL	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	HCN1	HGNC	ENSG00000164588				46	0	0	33	6	15.3846
EXOC3	0	genome.wustl.edu	37	5	465330	465330	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	465330	465330	C	T	SNP	EXOC3	ENST00000315013	human	ensembl	74_37	+1	known	silent	c.1881	p.A627	0.012	pfam_Sec6	pfam_Sec6	-	no_errors	EXOC3	HGNC	ENSG00000180104				10	0	0	9	2	18.1818
ISL1	0	genome.wustl.edu	37	5	50685764	50685764	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	50685764	50685764	A	G	SNP	ISL1	ENST00000230658	human	ensembl	74_37	+1	known	missense	c.763	p.T255A	1.000	NULL	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	ISL1	HGNC	ENSG00000016082				36	0	0	15	5	25
ANKRD55	0	genome.wustl.edu	37	5	55407543	55407543	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	55407543	55407543	G	A	SNP	ANKRD55	ENST00000341048	human	ensembl	74_37	-1	known	silent	c.1032	p.N344	0.683	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD55	HGNC	ENSG00000164512				100	0	0	100	18	15.2542
GPBP1	0	genome.wustl.edu	37	5	56546862	56546862	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	56546862	56546862	A	G	SNP	GPBP1	ENST00000424459	human	ensembl	74_37	+1	known	missense	c.1114	p.I372V	1.000	NULL	NULL	-	no_errors	GPBP1	HGNC	ENSG00000062194				76	0	0	89	17	16.0377
ACTBL2	0	genome.wustl.edu	37	5	56778014	56778014	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	56778014	56778014	T	C	SNP	ACTBL2	ENST00000423391	human	ensembl	74_37	-1	known	missense	c.521	p.H174R	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTBL2	HGNC	ENSG00000169067				109	0	0	87	18	17.1429
ACTBL2	0	genome.wustl.edu	37	5	56778343	56778343	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	56778343	56778343	G	A	SNP	ACTBL2	ENST00000423391	human	ensembl	74_37	-1	known	silent	c.192	p.G64	1.000	pfam_Actin-related,smart_Actin-related,prints_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTBL2	HGNC	ENSG00000169067				49	0	0	63	5	7.35294
RNF180	0	genome.wustl.edu	37	5	63509571	63509571	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	63509571	63509571	C	T	SNP	RNF180	ENST00000389100	human	ensembl	74_37	+1	known	missense	c.418	p.H140Y	0.984	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF180	HGNC	ENSG00000164197				156	0	0	145	24	14.2012
TRIM23	0	genome.wustl.edu	37	5	64887740	64887740	+	Silent	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	64887740	64887740	A	G	SNP	TRIM23	ENST00000231524	human	ensembl	74_37	-1	known	silent	c.1581	p.T527	0.892	pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,smart_Small_GTPase_Rab_type,prints_Small_GTPase_ARF/SAR,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,pfam_MIRO-like,pfam_Gtr1_RagA,pfam_Gprotein_alpha_su,pfam_Znf_B-box,superfamily_P-loop_NTPase,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,smart_Small_GTPase_Rab_type,pfscan_Znf_B-box,pfscan_Znf_RING,pfscan_Znf_C2H2,prints_Small_GTPase_ARF/SAR,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	TRIM23	HGNC	ENSG00000113595				65	0	0	67	10	12.987
SV2C	0	genome.wustl.edu	37	5	75597266	75597266	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	75597266	75597266	T	A	SNP	SV2C	ENST00000502798	human	ensembl	74_37	+1	known	missense	c.1896	p.S632R	0.691	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2	-	no_errors	SV2C	HGNC	ENSG00000122012				217	0	0	190	33	14.7982
ADCY2	0	genome.wustl.edu	37	5	7626360	7626360	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	7626360	7626360	G	A	SNP	ADCY2	ENST00000338316	human	ensembl	74_37	+1	known	silent	c.651	p.Q217	1.000	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY2	HGNC	ENSG00000078295				110	0	0	88	12	12
ARSB	0	genome.wustl.edu	37	5	78077720	78077720	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	78077720	78077720	C	T	SNP	ARSB	ENST00000264914	human	ensembl	74_37	-1	known	missense	c.1291	p.A431T	1.000	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSB	HGNC	ENSG00000113273				71	0	0	72	11	13.253
MTX3	0	genome.wustl.edu	37	5	79279521	79279521	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	79279521	79279521	G	A	SNP	MTX3	ENST00000512528	human	ensembl	74_37	-1	known	missense	c.925	p.R309W	0.004	NULL	pfam_Sam37/metaxin,superfamily_Glutathione-S-Trfase_C-like,pirsf_Metaxin	-	no_errors	MTX3	HGNC	ENSG00000177034				64	0	0	72	9	11.1111
LOC101929215	0	genome.wustl.edu	37	5	79368395	79368395	+	RNA	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	79368395	79368395	C	T	SNP	LOC101929215	ENST00000514042	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CTD-2201I18.1	Clone_based_vega_gene	ENSG00000249825				16	0	0	13	6	31.5789
FAM151B	0	genome.wustl.edu	37	5	79837534	79837534	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	79837534	79837534	C	T	SNP	FAM151B	ENST00000282226	human	ensembl	74_37	+1	known	silent	c.714	p.S238	0.362	pfam_DUF2181	pfam_DUF2181	-	no_errors	FAM151B	HGNC	ENSG00000152380				52	0	0	53	11	17.1875
RASGRF2	0	genome.wustl.edu	37	5	80521544	80521544	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	80521544	80521544	G	A	SNP	RASGRF2	ENST00000265080	human	ensembl	74_37	+1	known	silent	c.3669	p.T1223	0.057	superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,superfamily_DH-domain,smart_Pleckstrin_homology,smart_DH-domain,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRF2	HGNC	ENSG00000113319				62	0	0	44	8	15.3846
CKMT2	0	genome.wustl.edu	37	5	80550855	80550855	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	80550855	80550855	G	A	SNP	CKMT2	ENST00000254035	human	ensembl	74_37	+1	known	missense	c.491	p.R164Q	0.996	pfam_ATP-guanido_PTrfase_cat	pfam_ATP-guanido_PTrfase_cat,pfam_ATP-guanido_PTrfase_N,superfamily_ATP-guanido_PTrfase_N	-	no_errors	CKMT2	HGNC	ENSG00000131730				34	0	0	22	4	15.3846
SSBP2	0	genome.wustl.edu	37	5	80724431	80724431	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	80724431	80724431	A	T	SNP	SSBP2	ENST00000320672	human	ensembl	74_37	-1	known	missense	c.1029	p.N343K	0.999	NULL	smart_LisH_dimerisation,pfscan_LisH_dimerisation,prints_SSDP_DNA-bd	-	no_errors	SSBP2	HGNC	ENSG00000145687				53	0	0	47	13	21.6667
TMEM161B	0	genome.wustl.edu	37	5	87502851	87502851	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	87502851	87502851	T	C	SNP	TMEM161B	ENST00000296595	human	ensembl	74_37	-1	known	missense	c.593	p.E198G	1.000	pfam_Transmembrane_161A/B	pfam_Transmembrane_161A/B	-	no_errors	TMEM161B	HGNC	ENSG00000164180				30	0	0	35	3	7.89474
SEMA5A	0	genome.wustl.edu	37	5	9044573	9044573	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	9044573	9044573	A	G	SNP	SEMA5A	ENST00000382496	human	ensembl	74_37	-1	known	missense	c.3017	p.I1006T	1.000	NULL	pfam_Semap_dom,pfam_Thrombospondin_1_rpt,superfamily_Semap_dom,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Thrombospondin_1_rpt,pfscan_Semap_dom,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5A	HGNC	ENSG00000112902				87	0	0	66	7	9.58904
ANKRD32	0	genome.wustl.edu	37	5	94030563	94030563	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	94030563	94030563	C	T	SNP	ANKRD32	ENST00000265140	human	ensembl	74_37	+1	known	missense	c.2723	p.A908V	0.999	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_BRCT_dom,smart_BRCT_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD32	HGNC	ENSG00000133302				80	0	0	88	17	16.1905
SIM1	0	genome.wustl.edu	37	6	100838636	100838636	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	100838636	100838636	C	T	SNP	SIM1	ENST00000262901	human	ensembl	74_37	-1	known	silent	c.1902	p.Q634	0.992	pfam_SIM_C	pfam_SIM_C,pfam_PAS_fold_3,pfam_PAS_fold,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	SIM1	HGNC	ENSG00000112246				163	0	0	138	33	19.2982
ASCC3	0	genome.wustl.edu	37	6	101075830	101075830	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	101075830	101075830	A	G	SNP	ASCC3	ENST00000369162	human	ensembl	74_37	-1	known	missense	c.4409	p.V1470A	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_AAA+_ATPase,pfscan_Helicase_ATP-bd	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_AAA+_ATPase,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ASCC3	HGNC	ENSG00000112249				52	0	0	53	10	15.873
SCML4	0	genome.wustl.edu	37	6	108066255	108066255	+	Silent	SNP	G	G	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	108066255	108066255	G	T	SNP	SCML4	ENST00000369021	human	ensembl	74_37	-1	known	silent	c.493	p.R165	1.000	pfam_DUF3588	pfam_DUF3588	-	no_errors	SCML4	HGNC	ENSG00000146285				34	0	0	17	7	29.1667
REV3L	0	genome.wustl.edu	37	6	111710360	111710360	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	111710360	111710360	G	A	SNP	REV3L	ENST00000358835	human	ensembl	74_37	-1	known	missense	c.811	p.R271W	1.000	superfamily_RNaseH-like_dom	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B	-	no_errors	REV3L	HGNC	ENSG00000009413				117	1	0.847458	133	13	8.90411
DSE	0	genome.wustl.edu	37	6	116747852	116747852	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	116747852	116747852	C	A	SNP	DSE	ENST00000537543	human	ensembl	74_37	+1	known	missense	c.589	p.L197I	1.000	superfamily_Chondroitin_lyas	superfamily_Chondroitin_lyas	-	no_errors	DSE	HGNC	ENSG00000111817				99	0	0	105	11	9.48276
EPB41L2	0	genome.wustl.edu	37	6	131247750	131247750	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	131247750	131247750	G	A	SNP	EPB41L2	ENST00000337057	human	ensembl	74_37	-1	known	nonsense	c.805	p.Q269*	1.000	pirsf_Band_41_protein,pfam_FERM_N,smart_Band_41_domain,pfscan_FERM_domain	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB_dom,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like,pfscan_FERM_domain	-	no_errors	EPB41L2	HGNC	ENSG00000079819				104	0	0	98	15	13.2743
STX7	0	genome.wustl.edu	37	6	132781989	132781989	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	132781989	132781989	G	A	SNP	STX7	ENST00000367941	human	ensembl	74_37	-1	known	missense	c.694	p.R232C	1.000	pfam_T_SNARE_dom	pfam_T_SNARE_dom,pfam_Syntaxin_N,superfamily_t-SNARE,smart_Syntaxin_N,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX7	HGNC	ENSG00000079950				57	0	0	67	12	15.1899
TNFAIP3	0	genome.wustl.edu	37	6	138196150	138196150	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	138196150	138196150	C	T	SNP	TNFAIP3	ENST00000237289	human	ensembl	74_37	+1	known	missense	c.464	p.T155M	1.000	pfam_OTU,pfscan_OTU	pfam_Znf_A20,pfam_OTU,smart_Znf_A20,pfscan_OTU,pfscan_Znf_A20	-	no_errors	TNFAIP3	HGNC	ENSG00000118503				106	0	0	119	15	11.194
RNF182	0	genome.wustl.edu	37	6	13977897	13977897	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	13977897	13977897	C	T	SNP	RNF182	ENST00000488300	human	ensembl	74_37	+1	known	missense	c.547	p.R183W	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF182	HGNC	ENSG00000180537				154	0	0	172	25	12.6904
SHPRH	0	genome.wustl.edu	37	6	146243472	146243472	+	Silent	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	146243472	146243472	A	G	SNP	SHPRH	ENST00000367503	human	ensembl	74_37	-1	known	silent	c.3744	p.C1248	1.000	superfamily_P-loop_NTPase	pfam_SNF2_N,pfam_Histone_H1/H5_H15,superfamily_P-loop_NTPase,superfamily_Znf_FYVE_PHD,superfamily_WW_dom,smart_Helicase_ATP-bd,smart_Histone_H1/H5_H15,smart_Znf_PHD,smart_Znf_RING,smart_Helicase_C,pfscan_Znf_RING,pfscan_Helicase_C	-	no_errors	SHPRH	HGNC	ENSG00000146414				35	0	0	46	6	11.5385
GRM1	0	genome.wustl.edu	37	6	146678795	146678795	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	146678795	146678795	G	C	SNP	GRM1	ENST00000282753	human	ensembl	74_37	+1	known	missense	c.1567	p.V523L	1.000	pfam_GPCR_3_9-Cys_dom	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Metabotropic_Glu_rcpt_Homer-bd,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3_mtglu_rcpt_1,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_5	-	no_errors	GRM1	HGNC	ENSG00000152822				55	0	0	62	14	18.4211
RAB32	0	genome.wustl.edu	37	6	146865142	146865142	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	146865142	146865142	C	T	SNP	RAB32	ENST00000367495	human	ensembl	74_37	+1	known	silent	c.135	p.Y45	0.990	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB32	HGNC	ENSG00000118508				53	0	0	31	10	24.3902
ADGB	0	genome.wustl.edu	37	6	147012353	147012353	+	Silent	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	147012353	147012353	A	G	SNP	ADGB	ENST00000397944	human	ensembl	74_37	+1	known	silent	c.1413	p.P471	0.805	smart_Peptidase_C2_calpain_cat	pfam_Peptidase_C2_calpain_cat,superfamily_Globin-like,smart_Peptidase_C2_calpain_cat,pfscan_IQ_motif_EF-hand-BS,pfscan_Peptidase_C2_calpain_cat	-	no_errors	ADGB	HGNC	ENSG00000118492				19	0	0	16	3	15.7895
PLEKHG1	0	genome.wustl.edu	37	6	151055033	151055033	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	151055033	151055033	C	T	SNP	PLEKHG1	ENST00000358517	human	ensembl	74_37	+1	known	silent	c.216	p.P72	0.000	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG1	HGNC	ENSG00000120278				42	0	0	45	12	21.0526
SYNE1	0	genome.wustl.edu	37	6	152718029	152718029	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	152718029	152718029	T	G	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	missense	c.7437	p.K2479N	1.000	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				102	0	0	98	20	16.9492
TIAM2	0	genome.wustl.edu	37	6	155578187	155578187	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	155578187	155578187	G	A	SNP	TIAM2	ENST00000456144	human	ensembl	74_37	+1	known	missense	c.5125	p.V1709I	1.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,superfamily_HR1_rho-bd,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM2	HGNC	ENSG00000146426				47	0	0	44	7	13.7255
ARID1B	0	genome.wustl.edu	37	6	157405929	157405929	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	157405929	157405929	C	T	SNP	ARID1B	ENST00000367148	human	ensembl	74_37	+1	known	missense	c.2132	p.A711V	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1B	HGNC	ENSG00000049618				72	0	0	58	10	14.7059
PARK2	0	genome.wustl.edu	37	6	161990440	161990440	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	161990440	161990440	G	A	SNP	PARK2	ENST00000366898	human	ensembl	74_37	-1	known	missense	c.880	p.P294S	1.000	pirsf_Parkin	pfam_Ubiquitin_dom,pfam_Znf_C6HC,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,smart_Znf_C6HC,pirsf_Parkin,pfscan_Ubiquitin_supergroup,prints_Parkin,prints_Ubiquitin	-	no_errors	PARK2	HGNC	ENSG00000185345				53	0	0	60	9	13.0435
ATXN1	0	genome.wustl.edu	37	6	16306697	16306697	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	16306697	16306697	T	C	SNP	ATXN1	ENST00000244769	human	ensembl	74_37	-1	known	missense	c.2311	p.K771E	1.000	NULL	pfam_Ataxin-1_HBP1,pfam_Capicua_tscrpt_rep_mod,superfamily_Ataxin-1_HBP1,smart_Ataxin_AXH_dom,pfscan_Ataxin-1_HBP1	-	no_errors	ATXN1	HGNC	ENSG00000124788				68	0	0	41	7	14.5833
RPS6KA2	0	genome.wustl.edu	37	6	166864694	166864694	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	166864694	166864694	T	C	SNP	RPS6KA2	ENST00000510118	human	ensembl	74_37	-1	known	missense	c.1178	p.N393S	0.998	pfam_Pkinase_C,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	RPS6KA2	HGNC	ENSG00000071242				106	0	0	98	12	10.9091
KIF25	0	genome.wustl.edu	37	6	168430309	168430309	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	168430309	168430309	G	T	SNP	KIF25	ENST00000354419	human	ensembl	74_37	+1	known	missense	c.44	p.R15M	0.005	smart_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF25	HGNC	ENSG00000125337				84	0	0	64	8	11.1111
KIF13A	0	genome.wustl.edu	37	6	17826310	17826310	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	17826310	17826310	C	T	SNP	KIF13A	ENST00000259711	human	ensembl	74_37	-1	known	nonsense	c.1578	p.W526*	1.000	pfam_FHA_dom,superfamily_SMAD_FHA_domain	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_KIF1B,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF13A	HGNC	ENSG00000137177				65	0	0	62	14	18.4211
NHLRC1	0	genome.wustl.edu	37	6	18122083	18122083	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	18122083	18122083	C	T	SNP	NHLRC1	ENST00000340650	human	ensembl	74_37	-1	known	missense	c.755	p.R252Q	0.044	pfscan_NHL_repeat_subgr	smart_Znf_RING,pfscan_NHL_repeat_subgr,pfscan_Znf_RING	-	no_errors	NHLRC1	HGNC	ENSG00000187566				53	0	0	36	9	20
GPLD1	0	genome.wustl.edu	37	6	24460553	24460553	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	24460553	24460553	T	C	SNP	GPLD1	ENST00000230036	human	ensembl	74_37	-1	known	missense	c.962	p.N321S	0.263	NULL	pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Gprt_PLipase_D	-	no_errors	GPLD1	HGNC	ENSG00000112293				141	1	0.704225	106	60	36.1446
SLC17A2	0	genome.wustl.edu	37	6	25914895	25914895	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	25914895	25914895	A	T	SNP	SLC17A2	ENST00000377850	human	ensembl	74_37	-1	known	nonsense	c.1215	p.Y405*	0.907	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A2	HGNC	ENSG00000112337				40	0	0	39	11	22
ZNF165	0	genome.wustl.edu	37	6	28053645	28053645	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	28053645	28053645	A	C	SNP	ZNF165	ENST00000377325	human	ensembl	74_37	+1	known	missense	c.387	p.R129S	0.367	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF165	HGNC	ENSG00000197279				77	0	0	51	32	38.5542
GABBR1	0	genome.wustl.edu	37	6	29589896	29589896	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	29589896	29589896	G	A	SNP	GABBR1	ENST00000377034	human	ensembl	74_37	-1	known	silent	c.1050	p.P350	0.952	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_GPCR_3_GABA_rcpt_B	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Sushi_SCR_CCP,superfamily_Peripla_BP_I,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,prints_GPCR_3_GABA_rcpt_B,prints_GPCR_3_GABA_rcpt_B1,pfscan_Sushi_SCR_CCP,pfscan_GPCR_3_C	-	no_errors	GABBR1	HGNC	ENSG00000204681				58	0	0	54	12	18.1818
PRRC2A	0	genome.wustl.edu	37	6	31602535	31602535	+	Silent	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	31602535	31602535	T	C	SNP	PRRC2A	ENST00000376007	human	ensembl	74_37	+1	known	silent	c.4941	p.S1647	1.000	NULL	pfam_BAT2_N	-	no_errors	PRRC2A	HGNC	ENSG00000204469				118	0	0	110	24	17.9104
CLIC1	0	genome.wustl.edu	37	6	31701700	31701700	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	31701700	31701700	T	C	SNP	CLIC1	ENST00000375779	human	ensembl	74_37	-1	known	missense	c.188	p.Q63R	1.000	superfamily_Thioredoxin-like_fold,tigrfam_Int_Cl_channel	superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_Int_Cl_channel,tigrfam_Int_Cl_channel	-	no_errors	CLIC1	HGNC	ENSG00000213719				102	0	0	89	29	24.5763
C2	0	genome.wustl.edu	37	6	31902160	31902160	+	Silent	SNP	A	A	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	31902160	31902160	A	C	SNP	C2	ENST00000418949	human	ensembl	74_37	+1	putative	silent	c.933	p.P311	0.001	NULL	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	C2	HGNC	ENSG00000166278				45	0	0	53	7	11.6667
HLA-DMA	0	genome.wustl.edu	37	6	32917066	32917066	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	32917066	32917066	G	A	SNP	HLA-DMA	ENST00000374843	human	ensembl	74_37	-1	known	missense	c.763	p.R255W	0.991	NULL	pfam_MHC_II_a_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_a_N,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	HLA-DMA	HGNC	ENSG00000204257				91	0	0	46	22	32.3529
HLA-DOA	0	genome.wustl.edu	37	6	32977255	32977255	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	32977255	32977255	G	A	SNP	HLA-DOA	ENST00000229829	human	ensembl	74_37	-1	known	missense	c.59	p.P20L	0.028	NULL	pfam_MHC_II_a_N,pfam_Ig_C1-set,pfam_CD80_C2-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_a_N,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	HLA-DOA	HGNC	ENSG00000204252				14	0	0	13	5	27.7778
FKBP5	0	genome.wustl.edu	37	6	35547992	35547992	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	35547992	35547992	T	C	SNP	FKBP5	ENST00000357266	human	ensembl	74_37	-1	known	missense	c.847	p.K283E	0.997	NULL	pfam_PPIase_FKBP_dom,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP5	HGNC	ENSG00000096060				161	0	0	143	17	10.625
LHFPL5	0	genome.wustl.edu	37	6	35773711	35773711	+	Silent	SNP	C	C	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	35773711	35773711	C	A	SNP	LHFPL5	ENST00000360215	human	ensembl	74_37	+1	known	silent	c.264	p.S88	1.000	pfam_Lipome_HGMIC_fus_partner-like	pfam_Lipome_HGMIC_fus_partner-like	-	no_errors	LHFPL5	HGNC	ENSG00000197753				160	0	0	118	21	15.1079
BRPF3	0	genome.wustl.edu	37	6	36168494	36168494	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	36168494	36168494	C	T	SNP	BRPF3	ENST00000357641	human	ensembl	74_37	+1	known	missense	c.395	p.P132L	0.998	pfam_Enhancer_polycomb-like_N	pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP_dom,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP_dom,pfscan_PWWP_dom,pfscan_Znf_PHD-finger,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRPF3	HGNC	ENSG00000096070				86	0	0	66	12	15.3846
DNAH8	0	genome.wustl.edu	37	6	38781845	38781845	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	38781845	38781845	G	A	SNP	DNAH8	ENST00000359357	human	ensembl	74_37	+1	known	silent	c.2622	p.K874	0.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721				123	0	0	128	20	13.5135
TREML4	0	genome.wustl.edu	37	6	41196492	41196492	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	41196492	41196492	C	T	SNP	TREML4	ENST00000341495	human	ensembl	74_37	+1	known	missense	c.104	p.T35I	0.001	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	TREML4	HGNC	ENSG00000188056				144	0	0	118	13	9.92366
TCTE1	0	genome.wustl.edu	37	6	44250020	44250020	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	44250020	44250020	C	T	SNP	TCTE1	ENST00000371505	human	ensembl	74_37	-1	known	missense	c.1123	p.E375K	0.999	smart_Leu-rich_rpt_RNase_inh_sub-typ	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	TCTE1	HGNC	ENSG00000146221				69	0	0	83	16	16.1616
RUNX2	0	genome.wustl.edu	37	6	45405710	45405710	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	45405710	45405710	G	A	SNP	RUNX2	ENST00000352853	human	ensembl	74_37	+1	known	missense	c.811	p.V271I	1.000	pfam_Runt_dom,superfamily_p53-like_TF_DNA-bd,pfscan_Runt_dom,prints_AML1_Runt	pfam_Runt_dom,pfam_RunxI_C_dom,superfamily_p53-like_TF_DNA-bd,pfscan_Runt_dom,prints_AML1_Runt	-	no_errors	RUNX2	HGNC	ENSG00000124813				204	0	0	226	27	10.6719
HCRTR2	0	genome.wustl.edu	37	6	55142277	55142277	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	55142277	55142277	G	A	SNP	HCRTR2	ENST00000370862	human	ensembl	74_37	+1	known	missense	c.862	p.A288T	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Orexin_rcpt	pfam_GPCR_Rhodpsn,pfam_Orexin_rcpt_2,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Orexin_rcpt,prints_GPCR_Rhodpsn,prints_Orexin_rcpt_2,prints_NPY_rcpt	-	no_errors	HCRTR2	HGNC	ENSG00000137252				50	0	0	45	5	10
DST	0	genome.wustl.edu	37	6	56376118	56376118	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	56376118	56376118	G	A	SNP	DST	ENST00000370754	human	ensembl	74_37	-1	known	silent	c.18564	p.S6188	1.000	pfam_Spectrin_repeat,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	DST	HGNC	ENSG00000151914				23	0	0	14	4	22.2222
COL9A1	0	genome.wustl.edu	37	6	70990716	70990716	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	70990716	70990716	C	T	SNP	COL9A1	ENST00000357250	human	ensembl	74_37	-1	known	silent	c.903	p.P301	0.025	pfam_Collagen	pfam_Collagen,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	-	no_errors	COL9A1	HGNC	ENSG00000112280				30	0	0	30	4	11.7647
RREB1	0	genome.wustl.edu	37	6	7226757	7226757	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	7226757	7226757	G	A	SNP	RREB1	ENST00000379938	human	ensembl	74_37	+1	known	silent	c.765	p.A255	0.416	smart_Znf_C2H2-like	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RREB1	HGNC	ENSG00000124782				69	0	0	73	14	16.092
COL12A1	0	genome.wustl.edu	37	6	75899338	75899338	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	75899338	75899338	C	T	SNP	COL12A1	ENST00000322507	human	ensembl	74_37	-1	known	silent	c.588	p.Q196	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799				92	0	0	114	13	10.2362
TTK	0	genome.wustl.edu	37	6	80718203	80718203	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	80718203	80718203	T	A	SNP	TTK	ENST00000369798	human	ensembl	74_37	+1	known	missense	c.463	p.S155T	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TTK	HGNC	ENSG00000112742				34	0	0	38	6	13.6364
UBE3D	0	genome.wustl.edu	37	6	83667139	83667139	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	83667139	83667139	G	A	SNP	UBE3D	ENST00000369747	human	ensembl	74_37	-1	known	silent	c.1041	p.S347	0.189	pfam_UBQ-conj_enz_E2-bd_prot	pfam_UBQ-conj_enz_E2-bd_prot	-	no_errors	UBE3D	HGNC	ENSG00000118420				51	0	0	64	6	8.57143
PGM3	0	genome.wustl.edu	37	6	83884176	83884176	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	83884176	83884176	T	C	SNP	PGM3	ENST00000513973	human	ensembl	74_37	-1	known	missense	c.1159	p.I387V	1.000	pirsf_PAGM	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-II,pfam_A-D-PHexomutase_C,superfamily_A-D-PHexomutase_a/b/a-I/II/III,pirsf_PAGM	-	no_errors	PGM3	HGNC	ENSG00000013375				47	0	0	48	7	12.7273
TBX18	0	genome.wustl.edu	37	6	85472307	85472307	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	85472307	85472307	C	T	SNP	TBX18	ENST00000369663	human	ensembl	74_37	-1	known	missense	c.452	p.R151H	1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_T-box,pfscan_TF_T-box	-	no_errors	TBX18	HGNC	ENSG00000112837				124	0	0	84	15	15.1515
ZNF292	0	genome.wustl.edu	37	6	87964590	87964590	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	87964590	87964590	C	G	SNP	ZNF292	ENST00000369577	human	ensembl	74_37	+1	known	missense	c.1243	p.Q415E	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF292	HGNC	ENSG00000188994				36	0	0	61	8	11.5942
ORC3	0	genome.wustl.edu	37	6	88315689	88315689	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	88315689	88315689	A	G	SNP	ORC3	ENST00000257789	human	ensembl	74_37	+1	known	missense	c.377	p.Q126R	1.000	pfam_ORC3	pfam_ORC3	-	no_errors	ORC3	HGNC	ENSG00000135336				100	0	0	104	13	11.1111
GABRR2	0	genome.wustl.edu	37	6	90024926	90024926	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	90024926	90024926	C	G	SNP	GABRR2	ENST00000602399	human	ensembl	74_37	-1	known	missense	c.34	p.G12R	0.000	NULL	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAa_rho2_rcpt,prints_GABAAa_rho_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRR2	HGNC	ENSG00000111886				260	0	0	226	32	12.4031
GABRR2	0	genome.wustl.edu	37	6	90024927	90024927	+	Silent	SNP	T	T	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	90024927	90024927	T	G	SNP	GABRR2	ENST00000602399	human	ensembl	74_37	-1	known	silent	c.33	p.T11	0.000	NULL	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAa_rho2_rcpt,prints_GABAAa_rho_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRR2	HGNC	ENSG00000111886				262	1	0.380228	227	31	12.0155
MDN1	0	genome.wustl.edu	37	6	90494779	90494779	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	90494779	90494779	A	T	SNP	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	nonsense	c.1401	p.Y467*	0.927	superfamily_P-loop_NTPase,smart_AAA+_ATPase,pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				177	0	0	199	33	14.2241
USP45	0	genome.wustl.edu	37	6	99958034	99958034	+	Silent	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	99958034	99958034	A	G	SNP	USP45	ENST00000327681	human	ensembl	74_37	-1	known	silent	c.63	p.T21	0.000	NULL	pfam_Peptidase_C19/C67,pfam_Znf_UBP,superfamily_Znf_FYVE_PHD,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP45	HGNC	ENSG00000123552				102	1	0.970874	137	19	12.1795
NYAP1	0	genome.wustl.edu	37	7	100086071	100086071	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	100086071	100086071	G	A	SNP	NYAP1	ENST00000423930	human	ensembl	74_37	+1	known	missense	c.727	p.G243S	0.999	NULL	NULL	-	no_errors	NYAP1	HGNC	ENSG00000166924				40	0	0	26	5	16.129
EPHB4	0	genome.wustl.edu	37	7	100420130	100420130	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	100420130	100420130	G	A	SNP	EPHB4	ENST00000358173	human	ensembl	74_37	-1	known	missense	c.571	p.H191Y	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ephrin_rcpt_lig-bd_dom,superfamily_Galactose-bd-like,smart_Ephrin_rcpt_lig-bd_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHB4	HGNC	ENSG00000196411				32	0	0	21	4	16
SLC12A9	0	genome.wustl.edu	37	7	100453458	100453458	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	100453458	100453458	C	T	SNP	SLC12A9	ENST00000354161	human	ensembl	74_37	+1	known	silent	c.447	p.A149	1.000	pfam_AA-permease/SLC12A_dom	pfam_AA-permease/SLC12A_dom	-	no_errors	SLC12A9	HGNC	ENSG00000146828				49	0	0	54	13	19.403
SRRT	0	genome.wustl.edu	37	7	100478930	100478930	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	100478930	100478930	C	T	SNP	SRRT	ENST00000388793	human	ensembl	74_37	+1	known	silent	c.147	p.R49	0.925	NULL	pfam_Arsenite-R_2,pfam_DUF3546	-	no_errors	SRRT	HGNC	ENSG00000087087				87	0	0	55	9	14.0625
MUC17	0	genome.wustl.edu	37	7	100682851	100682851	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	100682851	100682851	C	T	SNP	MUC17	ENST00000306151	human	ensembl	74_37	+1	known	silent	c.8154	p.D2718	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	MUC17	HGNC	ENSG00000169876				322	1	0.309598	328	40	10.8696
ORAI2	0	genome.wustl.edu	37	7	102087353	102087353	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	102087353	102087353	G	A	SNP	ORAI2	ENST00000356387	human	ensembl	74_37	+1	known	missense	c.619	p.V207M	0.995	pfam_CRAC_channel	pfam_CRAC_channel	-	no_errors	ORAI2	HGNC	ENSG00000160991				29	0	0	16	8	33.3333
CDHR3	0	genome.wustl.edu	37	7	105653434	105653434	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	105653434	105653434	G	A	SNP	CDHR3	ENST00000317716	human	ensembl	74_37	+1	known	missense	c.1181	p.G394D	0.609	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDHR3	HGNC	ENSG00000128536				119	0	0	101	17	14.4068
LAMB1	0	genome.wustl.edu	37	7	107580698	107580698	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	107580698	107580698	G	A	SNP	LAMB1	ENST00000222399	human	ensembl	74_37	-1	known	missense	c.3497	p.T1166M	0.999	pfam_EGF_laminin,smart_EGF_laminin,smart_EG-like_dom,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Prefoldin,superfamily_t-SNARE,superfamily_P-loop_NTPase,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB1	HGNC	ENSG00000091136				89	0	0	58	10	14.7059
NRCAM	0	genome.wustl.edu	37	7	107807442	107807442	+	Silent	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	107807442	107807442	T	C	SNP	NRCAM	ENST00000379028	human	ensembl	74_37	-1	known	silent	c.3390	p.T1130	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	NRCAM	HGNC	ENSG00000091129				40	0	0	25	4	13.7931
LRRN3	0	genome.wustl.edu	37	7	110764283	110764283	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	110764283	110764283	C	T	SNP	LRRN3	ENST00000308478	human	ensembl	74_37	+1	known	silent	c.1455	p.G485	0.985	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRRN3	HGNC	ENSG00000173114				70	0	0	96	11	10.2804
PHF14	0	genome.wustl.edu	37	7	11080314	11080314	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	11080314	11080314	G	A	SNP	PHF14	ENST00000403050	human	ensembl	74_37	+1	known	missense	c.2092	p.A698T	0.996	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF14	HGNC	ENSG00000106443				18	0	0	20	4	16.6667
CTTNBP2	0	genome.wustl.edu	37	7	117417627	117417627	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	117417627	117417627	T	C	SNP	CTTNBP2	ENST00000160373	human	ensembl	74_37	-1	known	missense	c.2716	p.I906V	1.000	superfamily_Ankyrin_rpt-contain_dom	pfam_Cortactin-binding_p2_N,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	CTTNBP2	HGNC	ENSG00000077063				82	0	0	72	10	12.1951
SCIN	0	genome.wustl.edu	37	7	12668796	12668796	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	12668796	12668796	A	G	SNP	SCIN	ENST00000297029	human	ensembl	74_37	+1	known	missense	c.1268	p.D423G	1.000	pfam_Gelsolin_dom,smart_Villin/Gelsolin,prints_Villin/Gelsolin	pfam_Gelsolin_dom,smart_Villin/Gelsolin,prints_Villin/Gelsolin	-	no_errors	SCIN	HGNC	ENSG00000006747				89	0	0	94	12	11.3208
CPA5	0	genome.wustl.edu	37	7	130008355	130008355	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	130008355	130008355	G	A	SNP	CPA5	ENST00000355388	human	ensembl	74_37	+1	known	missense	c.1228	p.A410T	0.998	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPA5	HGNC	ENSG00000158525				125	0	0	78	10	11.3636
PLXNA4	0	genome.wustl.edu	37	7	131859587	131859587	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	131859587	131859587	G	A	SNP	PLXNA4	ENST00000321063	human	ensembl	74_37	-1	known	missense	c.3967	p.R1323W	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA4	HGNC	ENSG00000221866				98	0	0	102	21	17.0732
NUP205	0	genome.wustl.edu	37	7	135301989	135301989	+	Silent	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	135301989	135301989	T	C	SNP	NUP205	ENST00000285968	human	ensembl	74_37	+1	known	silent	c.3684	p.N1228	0.998	pfam_Nup186/Nup192/Nup205	pfam_Nup186/Nup192/Nup205	-	no_errors	NUP205	HGNC	ENSG00000155561				84	0	0	97	20	17.094
KIAA1549	0	genome.wustl.edu	37	7	138603265	138603265	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	138603265	138603265	C	T	SNP	KIAA1549	ENST00000422774	human	ensembl	74_37	-1	known	silent	c.1107	p.A369	0.000	NULL	NULL	-	no_errors	KIAA1549	HGNC	ENSG00000122778				129	0	0	140	17	10.828
HIPK2	0	genome.wustl.edu	37	7	139416405	139416405	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	139416405	139416405	G	A	SNP	HIPK2	ENST00000406875	human	ensembl	74_37	-1	known	silent	c.429	p.S143	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	HIPK2	HGNC	ENSG00000064393				59	0	0	52	10	16.129
TRPV6	0	genome.wustl.edu	37	7	142574257	142574257	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	142574257	142574257	G	A	SNP	TRPV6	ENST00000359396	human	ensembl	74_37	-1	known	silent	c.666	p.Y222	0.931	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV5/TRPV6,tigrfam_TRP_channel	pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV5/TRPV6,prints_TRPV6_channel,prints_Ankyrin_rpt,tigrfam_TRP_channel	-	no_errors	TRPV6	HGNC	ENSG00000165125				66	0	0	58	8	12.1212
EPHA1	0	genome.wustl.edu	37	7	143096842	143096842	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	143096842	143096842	C	T	SNP	EPHA1	ENST00000275815	human	ensembl	74_37	-1	known	missense	c.737	p.R246H	0.067	pirsf_Tyr_kinase_ephrin_rcpt	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,superfamily_SAM/pointed,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA1	HGNC	ENSG00000146904				37	0	0	38	5	11.6279
OR2F2	0	genome.wustl.edu	37	7	143632553	143632553	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	143632553	143632553	C	T	SNP	OR2F2	ENST00000408955	human	ensembl	74_37	+1	known	silent	c.228	p.S76	0.117	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2F2	HGNC	ENSG00000221910				232	0	0	234	21	8.23529
OR2F2	0	genome.wustl.edu	37	7	143632955	143632955	+	Silent	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	143632955	143632955	T	C	SNP	OR2F2	ENST00000408955	human	ensembl	74_37	+1	known	silent	c.630	p.P210	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2F2	HGNC	ENSG00000221910				73	0	0	84	10	10.6383
OR2F1	0	genome.wustl.edu	37	7	143657708	143657708	+	Silent	SNP	T	T	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	143657708	143657708	T	G	SNP	OR2F1	ENST00000392899	human	ensembl	74_37	+1	known	silent	c.645	p.L215	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2F1	HGNC	ENSG00000213215				98	0	0	113	8	6.61157
OR2A2	0	genome.wustl.edu	37	7	143806951	143806951	+	Silent	SNP	C	C	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	143806951	143806951	C	A	SNP	OR2A2	ENST00000408979	human	ensembl	74_37	+1	known	silent	c.276	p.S92	0.979	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2A2	HGNC	ENSG00000221989				179	1	0.555556	160	26	13.9785
ZNF398	0	genome.wustl.edu	37	7	148851131	148851131	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	148851131	148851131	C	T	SNP	ZNF398	ENST00000540950	human	ensembl	74_37	+1	known	missense	c.134	p.A45V	1.000	pfam_DUF3669_Znf	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_DUF3669_Znf,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	ZNF398	HGNC	ENSG00000197024				86	0	0	59	18	23.3766
ZNF783	0	genome.wustl.edu	37	7	148978653	148978653	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	148978653	148978653	G	A	SNP	ZNF783	ENST00000434415	human	ensembl	74_37	+1	known	missense	c.860	p.R287Q	0.835	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_DUF3669_Znf,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	ZNF783	HGNC	ENSG00000204946				49	0	0	47	4	7.84314
AOC1	0	genome.wustl.edu	37	7	150554734	150554734	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	150554734	150554734	G	A	SNP	AOC1	ENST00000416793	human	ensembl	74_37	+1	known	silent	c.1176	p.P392	0.188	pfam_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_C	pfam_Cu_amine_oxidase_C,pfam_Cu_amine_oxidase_N2,pfam_Cu_amine_oxidase_N3,superfamily_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_N-reg,prints_Cu_amine_oxidase	-	no_errors	AOC1	HGNC	ENSG00000002726				61	0	0	53	12	18.4615
ASB10	0	genome.wustl.edu	37	7	150883498	150883498	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	150883498	150883498	G	A	SNP	ASB10	ENST00000422024	human	ensembl	74_37	-1	known	missense	c.700	p.R234W	0.170	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C,prints_Ankyrin_rpt	-	no_errors	ASB10	HGNC	ENSG00000146926				19	0	0	4	3	42.8571
KMT2C	0	genome.wustl.edu	37	7	151860524	151860524	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	151860524	151860524	G	A	SNP	KMT2C	ENST00000355193	human	ensembl	74_37	-1	known	missense	c.10138	p.P3380S	0.998	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2C	HGNC	ENSG00000055609				90	0	0	91	23	20.1754
WDR60	0	genome.wustl.edu	37	7	158664110	158664110	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	158664110	158664110	G	A	SNP	WDR60	ENST00000407559	human	ensembl	74_37	+1	known	missense	c.347	p.S116N	0.026	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR60	HGNC	ENSG00000126870				12	0	0	6	2	25
ABCB5	0	genome.wustl.edu	37	7	20793131	20793131	+	Splice_Site	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	20793131	20793131	T	C	SNP	ABCB5	ENST00000258738	human	ensembl	74_37	+1	known	splice_site	c.2241+2	e15+2	1.000	-	-	-	no_errors	ABCB5	HGNC	ENSG00000004846				84	0	0	76	15	16.4835
DNAH11	0	genome.wustl.edu	37	7	21742378	21742378	+	Silent	SNP	T	T	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	21742378	21742378	T	A	SNP	DNAH11	ENST00000328843	human	ensembl	74_37	+1	known	silent	c.6252	p.A2084	0.992	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877				36	0	0	25	6	19.3548
EIF3B	0	genome.wustl.edu	37	7	2418770	2418770	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	2418770	2418770	A	G	SNP	EIF3B	ENST00000360876	human	ensembl	74_37	+1	known	missense	c.2234	p.E745G	1.000	pirsf_EIF3B	pfam_TIF_beta_prop-like,pfam_RRM_dom,smart_RRM_dom,pirsf_EIF3B,pfscan_RRM_dom	-	no_errors	EIF3B	HGNC	ENSG00000106263				38	0	0	39	7	15.2174
DFNA5	0	genome.wustl.edu	37	7	24756983	24756983	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	24756983	24756983	G	A	SNP	DFNA5	ENST00000342947	human	ensembl	74_37	-1	known	missense	c.587	p.T196M	0.000	pfam_Gasdermin	pfam_Gasdermin	-	no_errors	DFNA5	HGNC	ENSG00000105928				58	0	0	40	4	9.09091
LFNG	0	genome.wustl.edu	37	7	2565326	2565326	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	2565326	2565326	T	C	SNP	LFNG	ENST00000222725	human	ensembl	74_37	+1	known	missense	c.743	p.V248A	1.000	pfam_Fringe-like,pirsf_Fringe	pfam_Fringe-like,pirsf_Fringe	-	no_errors	LFNG	HGNC	ENSG00000106003				34	0	0	17	2	10.5263
HOXA3	0	genome.wustl.edu	37	7	27148111	27148111	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	27148111	27148111	C	T	SNP	HOXA3	ENST00000317201	human	ensembl	74_37	-1	known	missense	c.755	p.G252D	1.000	superfamily_Homeodomain-like,smart_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXA3	HGNC	ENSG00000105997				81	0	0	75	9	10.7143
TAX1BP1	0	genome.wustl.edu	37	7	27855995	27855995	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	27855995	27855995	G	A	SNP	TAX1BP1	ENST00000396319	human	ensembl	74_37	+1	known	missense	c.1792	p.A598T	1.000	NULL	pfam_CoCoA	-	no_errors	TAX1BP1	HGNC	ENSG00000106052				123	0	0	119	21	15
BBS9	0	genome.wustl.edu	37	7	33388725	33388725	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	33388725	33388725	G	A	SNP	BBS9	ENST00000242067	human	ensembl	74_37	+1	known	missense	c.1375	p.V459I	0.019	NULL	NULL	-	no_errors	BBS9	HGNC	ENSG00000122507				80	0	0	88	16	15.3846
CDK13	0	genome.wustl.edu	37	7	40132819	40132819	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	40132819	40132819	C	A	SNP	CDK13	ENST00000181839	human	ensembl	74_37	+1	known	missense	c.3671	p.P1224H	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK13	HGNC	ENSG00000065883				78	0	0	85	11	11.4583
SDK1	0	genome.wustl.edu	37	7	4218194	4218194	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	4218194	4218194	G	A	SNP	SDK1	ENST00000404826	human	ensembl	74_37	+1	known	missense	c.5074	p.V1692M	0.986	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	SDK1	HGNC	ENSG00000146555				110	0	0	88	8	8.33333
PGAM2	0	genome.wustl.edu	37	7	44104780	44104780	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	44104780	44104780	G	A	SNP	PGAM2	ENST00000297283	human	ensembl	74_37	-1	known	missense	c.349	p.R117C	1.000	pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1,tigrfam_Phosphogly_mut1	pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1,tigrfam_Phosphogly_mut1	-	no_errors	PGAM2	HGNC	ENSG00000164708				33	0	0	15	6	28.5714
AEBP1	0	genome.wustl.edu	37	7	44153301	44153301	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	44153301	44153301	T	C	SNP	AEBP1	ENST00000223357	human	ensembl	74_37	+1	known	missense	c.2918	p.I973T	0.997	superfamily_CarboxyPept-like_regulatory,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_CarboxyPept-like_regulatory,smart_Coagulation_fac_5/8-C_type_dom,smart_Peptidase_M14,pfscan_Coagulation_fac_5/8-C_type_dom,prints_Peptidase_M14	-	no_errors	AEBP1	HGNC	ENSG00000106624				81	0	0	66	13	16.4557
GCK	0	genome.wustl.edu	37	7	44187337	44187337	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	44187337	44187337	C	T	SNP	GCK	ENST00000345378	human	ensembl	74_37	-1	known	missense	c.778	p.A260T	1.000	pfam_Hexokinase_C	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	GCK	HGNC	ENSG00000106633				69	0	0	48	15	23.8095
SEC61G	0	genome.wustl.edu	37	7	54823470	54823470	+	Splice_Site	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	54823470	54823470	A	G	SNP	SEC61G	ENST00000352861	human	ensembl	74_37	-1	known	splice_site	c.197+2	e2+2	1.000	-	-	-	no_errors	SEC61G	HGNC	ENSG00000132432				46	0	0	39	6	13.3333
EGFR	0	genome.wustl.edu	37	7	55223600	55223600	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	55223600	55223600	G	A	SNP	EGFR	ENST00000275493	human	ensembl	74_37	+1	known	missense	c.967	p.V323I	0.804	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Furin-like_Cys-rich_dom,superfamily_Growth_fac_rcpt_N_dom	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	EGFR	HGNC	ENSG00000146648				34	0	0	20	4	16.6667
EGFR	0	genome.wustl.edu	37	7	55233038	55233038	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	55233038	55233038	G	A	SNP	EGFR	ENST00000275493	human	ensembl	74_37	+1	known	silent	c.1788	p.P596	0.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	EGFR	HGNC	ENSG00000146648				64	0	0	55	10	15.3846
ZNF138	0	genome.wustl.edu	37	7	64275387	64275387	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	64275387	64275387	T	C	SNP	ZNF138	ENST00000437743	human	ensembl	74_37	+1	putative	missense	c.77	p.V26A	0.733	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF138	HGNC	ENSG00000197008				87	0	0	87	6	6.45161
ERV3-1	0	genome.wustl.edu	37	7	64452191	64452191	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	64452191	64452191	A	C	SNP	ERV3-1	ENST00000394323	human	ensembl	74_37	-1	known	missense	c.1214	p.L405R	0.480	NULL	NULL	-	no_errors	ERV3-1	HGNC	ENSG00000213462				34	0	0	35	7	16.6667
TYW1	0	genome.wustl.edu	37	7	66479405	66479405	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	66479405	66479405	C	A	SNP	TYW1	ENST00000359626	human	ensembl	74_37	+1	known	missense	c.427	p.L143I	0.902	pfam_Flavodoxin/NO_synth,pfscan_Flavodoxin/NO_synth,prints_Flavdoxin	pfam_rSAM,pfam_Flavodoxin/NO_synth,pfam_tRNA_wybutosine-synth,pfscan_Flavodoxin/NO_synth,prints_Flavdoxin	-	no_errors	TYW1	HGNC	ENSG00000198874				109	0	0	92	25	21.3675
TYW1B	0	genome.wustl.edu	37	7	72159738	72159738	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	72159738	72159738	C	T	SNP	TYW1B	ENST00000343721	human	ensembl	74_37	-1	known	missense	c.323	p.R108H	1.000	pfam_rSAM	pfam_rSAM,pfam_tRNA_wybutosine-synth	-	no_errors	TYW1B	HGNC	ENSG00000254184				95	0	0	92	14	13.2075
BAZ1B	0	genome.wustl.edu	37	7	72863875	72863875	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	72863875	72863875	C	T	SNP	BAZ1B	ENST00000339594	human	ensembl	74_37	-1	known	missense	c.3725	p.G1242D	1.000	superfamily_ARM-type_fold	pfam_WSTF_Acf1_Cbp146,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_WSTF_Acf1_Cbp146,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ1B	HGNC	ENSG00000009954				35	0	0	36	4	10
FGL2	0	genome.wustl.edu	37	7	76825822	76825822	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	76825822	76825822	C	T	SNP	FGL2	ENST00000248598	human	ensembl	74_37	-1	known	missense	c.1094	p.R365Q	0.982	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	FGL2	HGNC	ENSG00000127951				92	0	0	110	9	7.56303
GLCCI1	0	genome.wustl.edu	37	7	8062115	8062115	+	Silent	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	8062115	8062115	A	G	SNP	GLCCI1	ENST00000223145	human	ensembl	74_37	+1	known	silent	c.612	p.T204	0.994	NULL	NULL	-	no_errors	GLCCI1	HGNC	ENSG00000106415				25	0	0	32	6	15.7895
PCLO	0	genome.wustl.edu	37	7	82580130	82580130	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	82580130	82580130	C	T	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	silent	c.9774	p.E3258	1.000	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				135	0	0	133	18	11.9205
PCLO	0	genome.wustl.edu	37	7	82584742	82584742	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	82584742	82584742	G	A	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	missense	c.5527	p.R1843C	1.000	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				172	0	0	187	27	12.6168
STEAP4	0	genome.wustl.edu	37	7	87913386	87913386	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	87913386	87913386	A	G	SNP	STEAP4	ENST00000380079	human	ensembl	74_37	-1	known	missense	c.199	p.Y67H	0.942	NULL	pfam_Fe3_Rdtase_TM_dom	-	no_errors	STEAP4	HGNC	ENSG00000127954				77	0	0	79	12	13.1868
CCDC132	0	genome.wustl.edu	37	7	92926504	92926504	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	92926504	92926504	T	C	SNP	CCDC132	ENST00000305866	human	ensembl	74_37	+1	known	missense	c.1310	p.L437S	1.000	NULL	pfam_Vacuolar_sorting-assoc_54,pfam_DUF2451_C	-	no_errors	CCDC132	HGNC	ENSG00000004766				46	0	0	48	12	20
OCM2	0	genome.wustl.edu	37	7	97617763	97617763	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	97617763	97617763	G	A	SNP	OCM2	ENST00000257627	human	ensembl	74_37	-1	known	silent	c.159	p.N53	0.960	smart_EF_hand_dom,pfscan_EF_hand_dom	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	OCM2	HGNC	ENSG00000135175				122	0	0	121	16	11.6788
CYP3A5	0	genome.wustl.edu	37	7	99262895	99262895	+	Silent	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	99262895	99262895	T	C	SNP	CYP3A5	ENST00000222982	human	ensembl	74_37	-1	known	silent	c.564	p.S188	0.966	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-II	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_CYP3A,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-II,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	CYP3A5	HGNC	ENSG00000106258				134	0	0	115	15	11.5385
OR2AE1	0	genome.wustl.edu	37	7	99474306	99474306	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	99474306	99474306	G	A	SNP	OR2AE1	ENST00000316368	human	ensembl	74_37	-1	known	silent	c.351	p.V117	0.726	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2AE1	HGNC	ENSG00000244623				100	0	0	94	17	15.3153
ZNF3	0	genome.wustl.edu	37	7	99669329	99669329	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	99669329	99669329	C	T	SNP	ZNF3	ENST00000299667	human	ensembl	74_37	-1	known	missense	c.778	p.D260N	0.055	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF3	HGNC	ENSG00000166526				73	0	0	69	12	14.8148
GATS	0	genome.wustl.edu	37	7	99821527	99821527	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	99821527	99821527	G	A	SNP	GATS	ENST00000436886	human	ensembl	74_37	-1	known	missense	c.389	p.T130M	1.000	NULL	NULL	-	no_errors	GATS	HGNC	ENSG00000160844				103	0	0	58	11	15.942
VPS13B	0	genome.wustl.edu	37	8	100147902	100147902	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	100147902	100147902	C	T	SNP	VPS13B	ENST00000358544	human	ensembl	74_37	+1	known	nonsense	c.1504	p.R502*	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549				62	0	0	56	13	18.8406
RGS22	0	genome.wustl.edu	37	8	101065081	101065081	+	Silent	SNP	G	G	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	101065081	101065081	G	T	SNP	RGS22	ENST00000360863	human	ensembl	74_37	-1	known	silent	c.1638	p.T546	0.820	NULL	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam	-	no_errors	RGS22	HGNC	ENSG00000132554				133	0	0	142	20	12.3457
UBR5	0	genome.wustl.edu	37	8	103293613	103293613	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	103293613	103293613	A	G	SNP	UBR5	ENST00000520539	human	ensembl	74_37	-1	known	missense	c.5831	p.L1944S	1.000	NULL	pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_RCC1/BLIP-II,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin	-	no_errors	UBR5	HGNC	ENSG00000104517				114	0	0	127	21	14.1892
ODF1	0	genome.wustl.edu	37	8	103572812	103572812	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	103572812	103572812	G	A	SNP	ODF1	ENST00000285402	human	ensembl	74_37	+1	known	silent	c.453	p.S151	0.351	pfam_a-crystallin/Hsp20_dom,superfamily_HSP20-like_chaperone,pfscan_a-crystallin/Hsp20_dom	pfam_a-crystallin/Hsp20_dom,superfamily_HSP20-like_chaperone,pfscan_a-crystallin/Hsp20_dom	-	no_errors	ODF1	HGNC	ENSG00000155087				87	0	0	101	17	14.4068
ZFPM2	0	genome.wustl.edu	37	8	106813750	106813750	+	Silent	SNP	C	C	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	106813750	106813750	C	A	SNP	ZFPM2	ENST00000407775	human	ensembl	74_37	+1	known	silent	c.1440	p.A480	0.993	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFPM2	HGNC	ENSG00000169946				106	1	0.934579	108	23	17.5573
XKR6	0	genome.wustl.edu	37	8	10755778	10755778	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	10755778	10755778	C	T	SNP	XKR6	ENST00000416569	human	ensembl	74_37	-1	known	missense	c.1610	p.R537Q	1.000	NULL	pfam_Transport_prot_XK	-	no_errors	XKR6	HGNC	ENSG00000171044				35	0	0	35	5	12.5
TRHR	0	genome.wustl.edu	37	8	110100047	110100047	+	Silent	SNP	T	T	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	110100047	110100047	T	G	SNP	TRHR	ENST00000311762	human	ensembl	74_37	+1	known	silent	c.306	p.T102	0.531	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_TRH_rcpt_1	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_TRH_rcpt_1,prints_GPCR_Rhodpsn	-	no_errors	TRHR	HGNC	ENSG00000174417				119	0	0	101	15	12.931
PKHD1L1	0	genome.wustl.edu	37	8	110476610	110476610	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	110476610	110476610	A	G	SNP	PKHD1L1	ENST00000378402	human	ensembl	74_37	+1	known	missense	c.7549	p.I2517V	1.000	superfamily_Pectin_lyase_fold/virulence,smart_PbH1	pfam_IPT,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038				19	0	0	63	10	13.6986
CSMD3	0	genome.wustl.edu	37	8	113267597	113267597	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	113267597	113267597	T	C	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	missense	c.9922	p.I3308V	1.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				69	0	0	72	9	11.1111
GATA4	0	genome.wustl.edu	37	8	11614510	11614510	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	11614510	11614510	C	G	SNP	GATA4	ENST00000335135	human	ensembl	74_37	+1	known	missense	c.1064	p.T355S	0.990	pirsf_TF_GATA_4/5/6	pfam_GATA_N,pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA_4/5/6,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA4	HGNC	ENSG00000136574				86	0	0	76	11	12.6437
NEIL2	0	genome.wustl.edu	37	8	11637250	11637250	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	11637250	11637250	G	A	SNP	NEIL2	ENST00000284503	human	ensembl	74_37	+1	known	silent	c.282	p.G94	0.000	pfam_DNA_glycosylase/AP_lyase_cat,pfscan_DNA_glycosylase/AP_lyase_cat	pfam_DNA_glyclase/AP_lyase_DNA-bd,pfam_DNA_glycosylase/AP_lyase_cat,superfamily_Ribosomal_S13-like_H2TH,pfscan_Znf_DNA_glyclase/AP_lyase,pfscan_DNA_glycosylase/AP_lyase_cat	-	no_errors	NEIL2	HGNC	ENSG00000154328				58	0	0	50	14	21.875
EXT1	0	genome.wustl.edu	37	8	118819472	118819472	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	118819472	118819472	C	T	SNP	EXT1	ENST00000378204	human	ensembl	74_37	-1	known	missense	c.1867	p.A623T	1.000	pfam_HexNAc_Trfase_a	pfam_HexNAc_Trfase_a,pfam_Exostosin	-	no_errors	EXT1	HGNC	ENSG00000182197				114	1	0.869565	117	11	8.59375
NOV	0	genome.wustl.edu	37	8	120435303	120435303	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	120435303	120435303	C	T	SNP	NOV	ENST00000259526	human	ensembl	74_37	+1	known	silent	c.1005	p.T335	1.000	pfam_Cys_knot,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C	pfam_IGFBP-like,pfam_Cys_knot,pfam_VWF_C,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	NOV	HGNC	ENSG00000136999				274	0	0	292	31	9.59752
ZHX1	0	genome.wustl.edu	37	8	124267603	124267603	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	124267603	124267603	C	T	SNP	ZHX1	ENST00000297857	human	ensembl	74_37	-1	known	missense	c.584	p.R195Q	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZHX1	HGNC	ENSG00000165156				94	0	0	120	12	9.09091
TRIB1	0	genome.wustl.edu	37	8	126448362	126448362	+	Silent	SNP	C	C	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	126448362	126448362	C	A	SNP	TRIB1	ENST00000311922	human	ensembl	74_37	+1	known	silent	c.768	p.T256	0.971	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	TRIB1	HGNC	ENSG00000173334				68	0	0	60	6	9.09091
KIAA1456	0	genome.wustl.edu	37	8	12878931	12878931	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	12878931	12878931	G	A	SNP	KIAA1456	ENST00000524591	human	ensembl	74_37	+1	known	missense	c.743	p.R248H	0.996	NULL	pfam_Methyltransf_11,pfam_Methyltransf_12,pfam_UbiE/COQ5_MeTrFase,pfam_Methyltransferase-rel	-	no_errors	KIAA1456	HGNC	ENSG00000250305				128	0	0	131	23	14.9351
KCNQ3	0	genome.wustl.edu	37	8	133146585	133146585	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	133146585	133146585	T	G	SNP	KCNQ3	ENST00000388996	human	ensembl	74_37	-1	known	missense	c.1751	p.K584T	1.000	pfam_K_chnl_volt-dep_KCNQ_C,prints_K_chnl_volt-dep_KCNQ3	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ankyrin-G_BS,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_KCNQ3,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ3	HGNC	ENSG00000184156				78	0	0	64	10	13.5135
FAM135B	0	genome.wustl.edu	37	8	139153505	139153505	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	139153505	139153505	C	T	SNP	FAM135B	ENST00000395297	human	ensembl	74_37	-1	known	silent	c.3726	p.T1242	0.954	pfam_DUF676_lipase-like,pfam_PGAP1-like	pfam_DUF676_lipase-like,pfam_DUF3657,pfam_PGAP1-like	-	no_errors	FAM135B	HGNC	ENSG00000147724				82	0	0	80	13	13.9785
ZFP41	0	genome.wustl.edu	37	8	144332457	144332457	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	144332457	144332457	C	T	SNP	ZFP41	ENST00000330701	human	ensembl	74_37	+1	known	silent	c.444	p.C148	0.713	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP41	HGNC	ENSG00000181638				186	0	0	211	44	17.2549
SPATC1	0	genome.wustl.edu	37	8	145095846	145095846	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	145095846	145095846	C	T	SNP	SPATC1	ENST00000377470	human	ensembl	74_37	+1	known	missense	c.1144	p.P382S	0.982	NULL	NULL	-	no_errors	SPATC1	HGNC	ENSG00000186583				71	0	0	81	8	8.98876
CPSF1	0	genome.wustl.edu	37	8	145623823	145623823	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	145623823	145623823	G	A	SNP	CPSF1	ENST00000349769	human	ensembl	74_37	-1	known	missense	c.1763	p.T588M	1.000	NULL	pfam_Cleavage/polyA-sp_fac_asu_C	-	no_errors	CPSF1	HGNC	ENSG00000071894				88	0	0	87	14	13.8614
STC1	0	genome.wustl.edu	37	8	23709885	23709885	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	23709885	23709885	C	T	SNP	STC1	ENST00000290271	human	ensembl	74_37	-1	known	missense	c.131	p.R44H	1.000	pfam_Stanniocalcin	pfam_Stanniocalcin	-	no_errors	STC1	HGNC	ENSG00000159167				81	0	0	100	9	8.25688
SDAD1P1	0	genome.wustl.edu	37	8	26238378	26238378	+	RNA	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	26238378	26238378	A	G	SNP	SDAD1P1	ENST00000519902	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.996	-	-	-	no_errors	SDAD1P1	HGNC	ENSG00000228451				62	0	0	73	13	15.1163
CSMD1	0	genome.wustl.edu	37	8	2830689	2830689	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	2830689	2830689	C	T	SNP	CSMD1	ENST00000520002	human	ensembl	74_37	-1	known	missense	c.8876	p.R2959H	0.996	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117				71	0	0	88	9	9.27835
FZD3	0	genome.wustl.edu	37	8	28413394	28413394	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	28413394	28413394	C	T	SNP	FZD3	ENST00000240093	human	ensembl	74_37	+1	known	silent	c.1693	p.L565	1.000	NULL	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD3	HGNC	ENSG00000104290				65	0	0	76	11	12.6437
TTI2	0	genome.wustl.edu	37	8	33367337	33367337	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	33367337	33367337	A	G	SNP	TTI2	ENST00000360742	human	ensembl	74_37	-1	known	missense	c.761	p.V254A	1.000	pfam_DUF2454,superfamily_ARM-type_fold	pfam_DUF2454,superfamily_ARM-type_fold	-	no_errors	TTI2	HGNC	ENSG00000129696				94	0	0	95	13	12.037
GPR124	0	genome.wustl.edu	37	8	37696574	37696574	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	37696574	37696574	C	T	SNP	GPR124	ENST00000412232	human	ensembl	74_37	+1	known	missense	c.2360	p.T787I	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,pfscan_GPS_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,pfscan_Ig-like_dom	-	no_errors	GPR124	HGNC	ENSG00000020181				24	0	0	23	4	14.8148
WHSC1L1	0	genome.wustl.edu	37	8	38139077	38139077	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	38139077	38139077	C	T	SNP	WHSC1L1	ENST00000317025	human	ensembl	74_37	-1	known	missense	c.3526	p.G1176S	1.000	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	pfam_PWWP_dom,pfam_SET_dom,superfamily_Znf_FYVE_PHD,smart_PWWP_dom,smart_Znf_PHD,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger	-	no_errors	WHSC1L1	HGNC	ENSG00000147548				30	0	0	35	7	16.6667
POMK	0	genome.wustl.edu	37	8	42958705	42958705	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	42958705	42958705	C	T	SNP	POMK	ENST00000331373	human	ensembl	74_37	+1	known	missense	c.14	p.P5L	0.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,pfscan_Prot_kinase_dom	-	no_errors	POMK	HGNC	ENSG00000185900				96	0	0	120	18	13.0435
PRKDC	0	genome.wustl.edu	37	8	48706944	48706944	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	48706944	48706944	G	A	SNP	PRKDC	ENST00000314191	human	ensembl	74_37	-1	known	missense	c.10574	p.P3525L	1.000	pfscan_PIK_FAT	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729				31	0	0	48	6	11.1111
ATP6V1H	0	genome.wustl.edu	37	8	54730032	54730032	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	54730032	54730032	G	A	SNP	ATP6V1H	ENST00000359530	human	ensembl	74_37	-1	known	missense	c.365	p.A122V	1.000	pfam_ATPase_V1-cplx_hsu,superfamily_ARM-type_fold,pirsf_ATPase_V1-cplx_hsu	pfam_ATPase_V1-cplx_hsu,pfam_ATPase_V1-cplx_hsu_C,superfamily_ARM-type_fold,pirsf_ATPase_V1-cplx_hsu	-	no_errors	ATP6V1H	HGNC	ENSG00000047249				49	0	0	53	9	14.5161
SOX17	0	genome.wustl.edu	37	8	55372486	55372486	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	55372486	55372486	C	T	SNP	SOX17	ENST00000297316	human	ensembl	74_37	+1	known	silent	c.1176	p.H392	1.000	pfam_Sox_C_TAD	pfam_Sox_C_TAD,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX17	HGNC	ENSG00000164736				43	0	0	30	9	23.0769
RP1	0	genome.wustl.edu	37	8	55540063	55540063	+	Silent	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	55540063	55540063	T	C	SNP	RP1	ENST00000220676	human	ensembl	74_37	+1	known	silent	c.3621	p.D1207	0.003	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237				127	0	0	131	25	16.0256
CYP7A1	0	genome.wustl.edu	37	8	59404099	59404099	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	59404099	59404099	C	T	SNP	CYP7A1	ENST00000301645	human	ensembl	74_37	-1	known	missense	c.1450	p.A484T	1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I	-	no_errors	CYP7A1	HGNC	ENSG00000167910				45	0	0	39	4	9.30233
CHD7	0	genome.wustl.edu	37	8	61743037	61743037	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	61743037	61743037	A	G	SNP	CHD7	ENST00000423902	human	ensembl	74_37	+1	known	missense	c.3679	p.T1227A	0.995	pfam_SNF2_N,superfamily_P-loop_NTPase	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD7	HGNC	ENSG00000171316				102	0	0	143	19	11.7284
ASPH	0	genome.wustl.edu	37	8	62588788	62588788	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	62588788	62588788	C	T	SNP	ASPH	ENST00000379449	human	ensembl	74_37	-1	putative	missense	c.458	p.G153D	1.000	NULL	pfam_Asp-B-hydro/Triadin_dom	-	no_errors	ASPH	HGNC	ENSG00000198363				33	0	0	42	5	10.6383
MCPH1	0	genome.wustl.edu	37	8	6338243	6338243	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	6338243	6338243	A	G	SNP	MCPH1	ENST00000344683	human	ensembl	74_37	+1	known	missense	c.1982	p.N661S	0.008	smart_BRCT_dom	pfam_Microcephalin,pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom,prints_BRCA1	-	no_errors	MCPH1	HGNC	ENSG00000147316				110	0	0	114	18	13.6364
ADHFE1	0	genome.wustl.edu	37	8	67364208	67364208	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	67364208	67364208	C	A	SNP	ADHFE1	ENST00000396623	human	ensembl	74_37	+1	known	missense	c.755	p.T252N	1.000	pfam_ADH_Fe	pfam_ADH_Fe	-	no_errors	ADHFE1	HGNC	ENSG00000147576				74	0	0	67	10	12.987
PREX2	0	genome.wustl.edu	37	8	69104648	69104648	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	69104648	69104648	T	C	SNP	PREX2	ENST00000288368	human	ensembl	74_37	+1	known	missense	c.4492	p.C1498R	1.000	NULL	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889				35	0	0	41	6	12.766
TRAM1	0	genome.wustl.edu	37	8	71495964	71495964	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	71495964	71495964	T	A	SNP	TRAM1	ENST00000262213	human	ensembl	74_37	-1	known	missense	c.811	p.T271S	1.000	pfam_TLC-dom,smart_TLC-dom,pirsf_Translocation_assoc_membrane,pfscan_TLC-dom	pfam_TRAM1,pfam_TLC-dom,smart_TLC-dom,pirsf_Translocation_assoc_membrane,pfscan_TLC-dom	-	no_errors	TRAM1	HGNC	ENSG00000067167				189	0	0	241	35	12.6812
KCNB2	0	genome.wustl.edu	37	8	73849496	73849496	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	73849496	73849496	G	A	SNP	KCNB2	ENST00000523207	human	ensembl	74_37	+1	known	missense	c.1906	p.D636N	0.075	pfam_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv2.2	pfam_K_chnl_volt-dep_Kv2,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv2.2,prints_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv8	-	no_errors	KCNB2	HGNC	ENSG00000182674				99	0	0	93	13	12.2642
ZFHX4	0	genome.wustl.edu	37	8	77767139	77767139	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	77767139	77767139	G	A	SNP	ZFHX4	ENST00000521891	human	ensembl	74_37	+1	known	missense	c.7982	p.R2661K	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656				59	0	0	60	8	11.7647
SGK223	0	genome.wustl.edu	37	8	8176714	8176714	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	8176714	8176714	C	T	SNP	SGK223	ENST00000330777	human	ensembl	74_37	-1	known	silent	c.3171	p.P1057	1.000	smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	SGK223	Uniprot_gn	ENSG00000182319				36	0	0	29	7	19.4444
CNBD1	0	genome.wustl.edu	37	8	87951921	87951921	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	87951921	87951921	T	G	SNP	CNBD1	ENST00000518476	human	ensembl	74_37	+1	known	missense	c.370	p.L124V	0.012	NULL	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	-	no_errors	CNBD1	HGNC	ENSG00000176571				63	0	0	80	13	13.9785
NBN	0	genome.wustl.edu	37	8	90990491	90990491	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	90990491	90990491	G	T	SNP	NBN	ENST00000265433	human	ensembl	74_37	-1	known	missense	c.541	p.L181M	0.951	superfamily_BRCT_dom,pirsf_Nibrin_met	pfam_DNA-repair_Nbs1_C,pfam_FHA_dom,superfamily_SMAD_FHA_domain,superfamily_BRCT_dom,smart_FHA_dom,pirsf_Nibrin_met,pfscan_FHA_dom	-	no_errors	NBN	HGNC	ENSG00000104320				47	0	0	48	13	21.3115
RUNX1T1	0	genome.wustl.edu	37	8	92998448	92998448	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	92998448	92998448	G	A	SNP	RUNX1T1	ENST00000436581	human	ensembl	74_37	-1	known	missense	c.1216	p.R406W	1.000	pfam_NHR2	pfam_NHR2,pfam_TAFH_NHR1,pfam_Znf_MYND,smart_TAFH_NHR1,pfscan_TAFH_NHR1,pfscan_Znf_MYND,prints_ETO,prints_MTG8	-	no_errors	RUNX1T1	HGNC	ENSG00000079102				70	0	0	111	15	11.9048
TSPYL5	0	genome.wustl.edu	37	8	98289167	98289167	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	98289167	98289167	C	T	SNP	TSPYL5	ENST00000322128	human	ensembl	74_37	-1	known	silent	c.906	p.P302	0.997	pfam_NAP_family	pfam_NAP_family	-	no_errors	TSPYL5	HGNC	ENSG00000180543				78	0	0	80	11	12.0879
KCNS2	0	genome.wustl.edu	37	8	99441361	99441361	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	99441361	99441361	C	T	SNP	KCNS2	ENST00000287042	human	ensembl	74_37	+1	known	missense	c.1154	p.T385M	0.998	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom	pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv2	-	no_errors	KCNS2	HGNC	ENSG00000156486				94	0	0	94	13	12.1495
ALDOB	0	genome.wustl.edu	37	9	104187169	104187169	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	9	104187169	104187169	C	T	SNP	ALDOB	ENST00000374855	human	ensembl	74_37	-1	known	missense	c.955	p.A319T	1.000	pfam_Aldolase_I	pfam_Aldolase_I	-	no_errors	ALDOB	HGNC	ENSG00000136872				76	0	0	55	10	15.3846
EPB41L4B	0	genome.wustl.edu	37	9	112017804	112017804	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	9	112017804	112017804	G	A	SNP	EPB41L4B	ENST00000374566	human	ensembl	74_37	-1	known	missense	c.1156	p.R386C	1.000	pfam_FERM-adjacent	pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L4B	HGNC	ENSG00000095203				63	0	0	50	13	20.6349
PTPN3	0	genome.wustl.edu	37	9	112144688	112144688	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	9	112144688	112144688	C	T	SNP	PTPN3	ENST00000374541	human	ensembl	74_37	-1	known	missense	c.2422	p.A808T	0.997	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Dual-sp_phosphatase_cat-dom,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-3/4,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_PDZ,pfam_Dual-sp_phosphatase_cat-dom,superfamily_FERM_central,superfamily_PDZ,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-3/4,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,prints_Ez/rad/moesin_like,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN3	HGNC	ENSG00000070159				51	0	0	50	14	21.875
DNAJC25	0	genome.wustl.edu	37	9	114415422	114415422	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	9	114415422	114415422	G	A	SNP	DNAJC25	ENST00000313525	human	ensembl	74_37	+1	known	missense	c.1003	p.A335T	1.000	NULL	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,prints_DnaJ_domain,pfscan_DnaJ_domain	-	no_errors	DNAJC25	HGNC	ENSG00000059769				87	0	0	73	11	13.0952
HSDL2	0	genome.wustl.edu	37	9	115166406	115166406	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	9	115166406	115166406	T	G	SNP	HSDL2	ENST00000398805	human	ensembl	74_37	+1	novel	missense	c.149	p.L50R	1.000	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR	pfam_SCP2_sterol-bd_dom,pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,superfamily_SCP2_sterol-bd_dom,prints_Glc/ribitol_DH	-	no_errors	HSDL2	HGNC	ENSG00000119471				66	0	0	60	10	14.2857
FOXD4	0	genome.wustl.edu	37	9	117535	117535	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	9	117535	117535	C	T	SNP	FOXD4	ENST00000382500	human	ensembl	74_37	-1	known	silent	c.585	p.R195	0.997	pfam_TF_fork_head,pfscan_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXD4	HGNC	ENSG00000170122				159	0	0	109	10	8.40336
OR1Q1	0	genome.wustl.edu	37	9	125377600	125377600	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	9	125377600	125377600	A	G	SNP	OR1Q1	ENST00000297913	human	ensembl	74_37	+1	known	missense	c.584	p.N195S	0.027	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1Q1	HGNC	ENSG00000165202				110	0	0	108	16	12.9032
OR1K1	0	genome.wustl.edu	37	9	125563309	125563309	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	9	125563309	125563309	G	A	SNP	OR1K1	ENST00000277309	human	ensembl	74_37	+1	known	missense	c.908	p.R303Q	0.467	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1K1	HGNC	ENSG00000165204				72	0	0	61	9	12.8571
CRB2	0	genome.wustl.edu	37	9	126132851	126132851	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	9	126132851	126132851	C	A	SNP	CRB2	ENST00000373631	human	ensembl	74_37	+1	known	missense	c.1519	p.L507M	0.003	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_EG-like_dom,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	CRB2	HGNC	ENSG00000148204				55	0	0	47	8	14.5455
NEK6	0	genome.wustl.edu	37	9	127089654	127089654	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	9	127089654	127089654	C	T	SNP	NEK6	ENST00000373600	human	ensembl	74_37	+1	known	silent	c.654	p.G218	0.009	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK6	HGNC	ENSG00000119408				208	0	0	186	32	14.6789
GOLGA1	0	genome.wustl.edu	37	9	127650643	127650643	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	9	127650643	127650643	G	A	SNP	GOLGA1	ENST00000373555	human	ensembl	74_37	-1	known	silent	c.1794	p.F598	0.010	NULL	pfam_GRIP,superfamily_Prefoldin,superfamily_GRIP,smart_GRIP,pfscan_GRIP	-	no_errors	GOLGA1	HGNC	ENSG00000136935				123	0	0	137	22	13.8365
ZBTB43	0	genome.wustl.edu	37	9	129595614	129595614	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	9	129595614	129595614	G	A	SNP	ZBTB43	ENST00000373457	human	ensembl	74_37	+1	known	missense	c.826	p.V276M	0.958	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB43	HGNC	ENSG00000169155				28	0	0	21	4	16
SPTAN1	0	genome.wustl.edu	37	9	131395517	131395517	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	9	131395517	131395517	C	T	SNP	SPTAN1	ENST00000358161	human	ensembl	74_37	+1	known	silent	c.7338	p.C2446	1.000	pfam_EF-hand_Ca_insen	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_EF_hand_dom,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3,prints_SH3_domain	-	no_errors	SPTAN1	HGNC	ENSG00000197694				48	0	0	46	6	11.5385
LRRC8A	0	genome.wustl.edu	37	9	131670897	131670897	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	9	131670897	131670897	C	T	SNP	LRRC8A	ENST00000259324	human	ensembl	74_37	+1	known	missense	c.1454	p.A485V	0.999	NULL	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8A	HGNC	ENSG00000136802				17	0	0	14	7	33.3333
PRRC2B	0	genome.wustl.edu	37	9	134340174	134340174	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	9	134340174	134340174	C	T	SNP	PRRC2B	ENST00000357304	human	ensembl	74_37	+1	known	missense	c.1429	p.R477W	1.000	NULL	pfam_BAT2_N	-	no_errors	PRRC2B	HGNC	ENSG00000130723				34	0	0	35	4	10.2564
SETX	0	genome.wustl.edu	37	9	135139706	135139706	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	9	135139706	135139706	G	T	SNP	SETX	ENST00000372169	human	ensembl	74_37	-1	known	missense	c.8041	p.H2681N	0.000	NULL	superfamily_P-loop_NTPase	-	no_errors	SETX	HGNC	ENSG00000107290				333	0	0	244	44	15.2778
GTF3C4	0	genome.wustl.edu	37	9	135555180	135555180	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	9	135555180	135555180	G	T	SNP	GTF3C4	ENST00000372146	human	ensembl	74_37	+1	known	missense	c.2174	p.R725I	1.000	NULL	superfamily_WD40_repeat_dom	-	no_errors	GTF3C4	HGNC	ENSG00000125484				96	0	0	95	18	15.9292
RPL7A	0	genome.wustl.edu	37	9	136218200	136218200	+	Silent	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	9	136218200	136218200	A	G	SNP	RPL7A	ENST00000323345	human	ensembl	74_37	+1	known	silent	c.780	p.E260	0.957	NULL	pfam_Ribosomal_L7Ae/L30e/S12e/Gad45,prints_Ribosomal_L7A/L8,prints_Ribosomal_L7Ae/L8/Nhp2	-	no_errors	RPL7A	HGNC	ENSG00000148303				20	0	0	16	3	15.7895
BRD3	0	genome.wustl.edu	37	9	136913253	136913253	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	9	136913253	136913253	G	A	SNP	BRD3	ENST00000303407	human	ensembl	74_37	-1	known	silent	c.1038	p.H346	0.994	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	BRD3	HGNC	ENSG00000169925				16	0	0	13	4	23.5294
RXRA	0	genome.wustl.edu	37	9	137328510	137328510	+	RNA	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	9	137328510	137328510	A	G	SNP	RXRA	ENST00000356384	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.025	-	-	-	no_errors	RXRA	HGNC	ENSG00000186350				36	0	0	33	2	5.71429
CAMSAP1	0	genome.wustl.edu	37	9	138714112	138714112	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	9	138714112	138714112	C	T	SNP	CAMSAP1	ENST00000409386	human	ensembl	74_37	-1	known	missense	c.2428	p.A810T	0.026	NULL	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrel-like,superfamily_CH-domain	-	no_errors	CAMSAP1	HGNC	ENSG00000130559				91	0	0	77	10	11.4943
EDF1	0	genome.wustl.edu	37	9	139757844	139757844	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	9	139757844	139757844	G	A	SNP	EDF1	ENST00000224073	human	ensembl	74_37	-1	known	missense	c.187	p.R63W	1.000	pfam_MBF1_N	pfam_MBF1_N,pfam_Cro/C1-type_HTH,superfamily_Lambda_DNA-bd_dom,smart_Cro/C1-type_HTH,pfscan_Cro/C1-type_HTH	-	no_errors	EDF1	HGNC	ENSG00000107223				32	0	0	27	10	27.027
NELFB	0	genome.wustl.edu	37	9	140160411	140160411	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	9	140160411	140160411	G	A	SNP	NELFB	ENST00000343053	human	ensembl	74_37	+1	known	missense	c.979	p.G327S	0.823	pfam_COBRA1	pfam_COBRA1	-	no_errors	NELFB	HGNC	ENSG00000188986				35	0	0	25	3	10.7143
FOCAD	0	genome.wustl.edu	37	9	20988425	20988425	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	9	20988425	20988425	C	T	SNP	FOCAD	ENST00000338382	human	ensembl	74_37	+1	known	silent	c.5001	p.D1667	0.164	pfam_DUF3028	pfam_DUF3028,pfam_DUF3730,superfamily_ARM-type_fold	-	no_errors	FOCAD	HGNC	ENSG00000188352				38	0	0	53	8	13.1148
TLN1	0	genome.wustl.edu	37	9	35706102	35706102	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	9	35706102	35706102	C	T	SNP	TLN1	ENST00000314888	human	ensembl	74_37	-1	known	missense	c.5368	p.A1790T	1.000	superfamily_Vinculin/catenin	pfam_Talin_cent,pfam_Vinculin-bd_dom,pfam_ILWEQ_dom,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ_dom,pfscan_FERM_domain,pfscan_ILWEQ_dom	-	no_errors	TLN1	HGNC	ENSG00000137076				121	0	0	104	20	16.129
GNE	0	genome.wustl.edu	37	9	36227249	36227249	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	9	36227249	36227249	A	G	SNP	GNE	ENST00000396594	human	ensembl	74_37	-1	known	missense	c.1370	p.M457T	1.000	pfam_ROK,prints_Hexokinase	pfam_UDP_GlcNAc_Epimerase_2,pfam_ROK,prints_Hexokinase,tigrfam_UDP-GlcNAc_Epase	-	no_errors	GNE	HGNC	ENSG00000159921				41	0	0	51	9	15
GLDC	0	genome.wustl.edu	37	9	6604759	6604759	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	9	6604759	6604759	A	C	SNP	GLDC	ENST00000321612	human	ensembl	74_37	-1	known	missense	c.887	p.L296R	0.999	pfam_GDC-P_N,superfamily_PyrdxlP-dep_Trfase,tigrfam_GDC_P_homo	pfam_GDC-P_N,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase,tigrfam_GDC_P_homo	-	no_errors	GLDC	HGNC	ENSG00000178445				121	0	0	117	18	13.3333
MAMDC2	0	genome.wustl.edu	37	9	72833435	72833435	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	9	72833435	72833435	T	G	SNP	MAMDC2	ENST00000377182	human	ensembl	74_37	+1	known	missense	c.1834	p.L612V	0.210	pfam_MAM_dom,superfamily_ConA-like_lec_gl_sf,smart_MAM_dom,pfscan_MAM_dom	pfam_MAM_dom,superfamily_ConA-like_lec_gl_sf,smart_MAM_dom,pfscan_MAM_dom,prints_MAM_dom	-	no_errors	MAMDC2	HGNC	ENSG00000165072				85	0	0	86	13	13.1313
PRUNE2	0	genome.wustl.edu	37	9	79318865	79318865	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	9	79318865	79318865	C	T	SNP	PRUNE2	ENST00000428286	human	ensembl	74_37	-1	known	missense	c.6587	p.R2196H	0.245	NULL	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	PRUNE2	HGNC	ENSG00000106772				226	2	0.877193	212	27	11.2971
PRUNE2	0	genome.wustl.edu	37	9	79323912	79323912	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	9	79323912	79323912	C	T	SNP	PRUNE2	ENST00000428286	human	ensembl	74_37	-1	known	missense	c.2201	p.R734Q	0.023	NULL	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	PRUNE2	HGNC	ENSG00000106772				167	0	0	138	22	13.75
VPS13A	0	genome.wustl.edu	37	9	79841516	79841516	+	Splice_Site	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	9	79841516	79841516	T	C	SNP	VPS13A	ENST00000360280	human	ensembl	74_37	+1	known	splice_site	c.1357+2	e15+2	1.000	-	-	-	no_errors	VPS13A	HGNC	ENSG00000197969				69	0	0	87	12	12.1212
PTPRD	0	genome.wustl.edu	37	9	8319960	8319960	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	9	8319960	8319960	G	A	SNP	PTPRD	ENST00000356435	human	ensembl	74_37	-1	known	silent	c.5541	p.G1847	0.988	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRD	HGNC	ENSG00000153707				43	0	0	37	9	19.5652
SPATA31D1	0	genome.wustl.edu	37	9	84607460	84607460	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	9	84607460	84607460	G	A	SNP	SPATA31D1	ENST00000344803	human	ensembl	74_37	+1	known	missense	c.2075	p.R692Q	0.000	NULL	NULL	-	no_errors	SPATA31D1	HGNC	ENSG00000214929				121	0	0	114	19	14.2857
RASEF	0	genome.wustl.edu	37	9	85607893	85607893	+	Silent	SNP	A	A	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	9	85607893	85607893	A	T	SNP	RASEF	ENST00000376447	human	ensembl	74_37	-1	known	silent	c.1968	p.A656	0.996	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_Vinculin/catenin,smart_EF_hand_dom,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,pfscan_EF_hand_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	RASEF	HGNC	ENSG00000165105				76	0	0	76	13	14.6067
RMI1	0	genome.wustl.edu	37	9	86616999	86616999	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	9	86616999	86616999	C	G	SNP	RMI1	ENST00000325875	human	ensembl	74_37	+1	known	missense	c.1098	p.C366W	0.025	NULL	pfam_DUF1767	-	no_errors	RMI1	HGNC	ENSG00000178966				45	0	0	50	13	20.6349
SEMA4D	0	genome.wustl.edu	37	9	92020286	92020286	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	9	92020286	92020286	C	T	SNP	SEMA4D	ENST00000356444	human	ensembl	74_37	-1	known	missense	c.86	p.R29Q	0.814	superfamily_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Plexin_repeat,pfam_Immunoglobulin,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Ig_sub,smart_Ig_sub2,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA4D	HGNC	ENSG00000187764				50	0	0	46	10	17.8571
FBP2	0	genome.wustl.edu	37	9	97321299	97321299	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	9	97321299	97321299	C	T	SNP	FBP2	ENST00000375337	human	ensembl	74_37	-1	known	missense	c.941	p.R314Q	1.000	pfam_FBPase_class-1/SBPase,prints_FBPtase,prints_SBPase	pfam_FBPase_class-1/SBPase,pfam_Inositol_monophosphatase,prints_FBPtase,prints_SBPase	-	no_errors	FBP2	HGNC	ENSG00000130957				71	0	0	51	7	12.069
FBP2	0	genome.wustl.edu	37	9	97355861	97355861	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	9	97355861	97355861	G	A	SNP	FBP2	ENST00000375337	human	ensembl	74_37	-1	known	missense	c.148	p.R50C	1.000	pfam_FBPase_class-1/SBPase,prints_FBPtase	pfam_FBPase_class-1/SBPase,pfam_Inositol_monophosphatase,prints_FBPtase,prints_SBPase	-	no_errors	FBP2	HGNC	ENSG00000130957				28	0	0	27	8	22.8571
CTSV	0	genome.wustl.edu	37	9	99800233	99800233	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	9	99800233	99800233	C	T	SNP	CTSV	ENST00000259470	human	ensembl	74_37	-1	known	silent	c.93	p.Q31	0.988	pfam_Prot_inhib_I29,smart_Prot_inhib_I29	pfam_Peptidase_C1A_C,pfam_Prot_inhib_I29,smart_Prot_inhib_I29,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSV	HGNC	ENSG00000136943				98	0	0	70	14	16.6667
MT-CO1	0	genome.wustl.edu	37	MT	7419	7419	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	MT	7419	7419	G	A	SNP	MT-CO1	ENST00000361624	human	ensembl	74_37	+1	known	missense	c.1516	p.E506K	NULL	superfamily_Cyt_c_Oxase_su1_dom,pfscan_Cyt_c_Oxase_su1_dom	pfam_Cyt_c_Oxase_su1,superfamily_Cyt_c_Oxase_su1_dom,pfscan_Cyt_c_Oxase_su1_dom,prints_Cyt_c_Oxase_su1	-	no_errors	MT-CO1	HGNC	ENSG00000198804				510	1	0.195695	207	97	31.9079
MT-CO2	0	genome.wustl.edu	37	MT	8168	8168	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	MT	8168	8168	C	T	SNP	MT-CO2	ENST00000361739	human	ensembl	74_37	+1	known	nonsense	c.583	p.Q195*	NULL	pfam_Cyt_c_oxidase_su2_C,superfamily_Cupredoxin,pfscan_Cyt_c_oxidase_su2_C,tigrfam_Cyt_c_oxidase_su2	pfam_Cyt_c_oxidase_su2_C,pfam_Cyt_c_oxidase_su2_TM_dom,superfamily_Cupredoxin,superfamily_Cyt_c_oxidase_su2_TM_dom,pfscan_Cyt_c_oxidase_su2_TM_dom,pfscan_Cyt_c_oxidase_su2_C,tigrfam_Cyt_c_oxidase_su2	-	no_errors	MT-CO2	HGNC	ENSG00000198712				1451	4	0.274914	816	43	5.00582
GPRASP1	0	genome.wustl.edu	37	X	101911911	101911911	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	X	101911911	101911911	G	A	SNP	GPRASP1	ENST00000361600	human	ensembl	74_37	+1	known	missense	c.3070	p.A1024T	0.000	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	GPRASP1	HGNC	ENSG00000198932				76	0	0	64	22	25.5814
MORC4	0	genome.wustl.edu	37	X	106185215	106185215	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	X	106185215	106185215	C	T	SNP	MORC4	ENST00000355610	human	ensembl	74_37	-1	known	silent	c.2613	p.Q871	1.000	superfamily_Prefoldin	pfam_Znf_CW,pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,superfamily_Prefoldin,pfscan_Znf_CW	-	no_errors	MORC4	HGNC	ENSG00000133131				52	0	0	50	13	20.6349
CHRDL1	0	genome.wustl.edu	37	X	110005996	110005996	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	X	110005996	110005996	C	T	SNP	CHRDL1	ENST00000372042	human	ensembl	74_37	-1	known	missense	c.134	p.R45K	1.000	pfam_VWF_C,smart_VWF_C,pfscan_VWF_C	pfam_VWF_C,smart_VWF_C,pfscan_VWF_C	-	no_errors	CHRDL1	HGNC	ENSG00000101938				58	0	0	54	22	28.9474
HTR2C	0	genome.wustl.edu	37	X	114141456	114141456	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	X	114141456	114141456	C	T	SNP	HTR2C	ENST00000276198	human	ensembl	74_37	+1	known	silent	c.855	p.N285	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_5HT2C_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_5HT2C_rcpt,prints_GPCR_Rhodpsn,prints_5HT_rcpt	-	no_errors	HTR2C	HGNC	ENSG00000147246				123	0	0	118	7	5.6
ENSG00000228532	0	genome.wustl.edu	37	X	114953369	114953369	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	X	114953369	114953369	G	A	SNP	ENSG00000228532	ENST00000449327	human	ensembl	74_37	-1	novel	nonsense	c.181	p.R61*	1.000	pfam_Rad60/SUMO_like,pfam_Ubiquitin_dom,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	pfam_Rad60/SUMO_like,pfam_Ubiquitin_dom,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	-	no_errors	RP1-241P17.4	Clone_based_vega_gene	ENSG00000228532				60	0	0	41	21	33.871
ZCCHC12	0	genome.wustl.edu	37	X	117960020	117960020	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	X	117960020	117960020	C	T	SNP	ZCCHC12	ENST00000310164	human	ensembl	74_37	+1	known	silent	c.813	p.D271	0.946	NULL	superfamily_Znf_CCHC	-	no_errors	ZCCHC12	HGNC	ENSG00000174460				43	0	0	31	10	24.3902
OCRL	0	genome.wustl.edu	37	X	128724180	128724180	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	X	128724180	128724180	C	A	SNP	OCRL	ENST00000371113	human	ensembl	74_37	+1	known	missense	c.2639	p.T880N	1.000	superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_Endo/exonuclease/phosphatase,pfam_RhoGAP_dom,superfamily_Endo/exonuclease/phosphatase,superfamily_Rho_GTPase_activation_prot,smart_IPPc,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	OCRL	HGNC	ENSG00000122126				111	1	0.892857	72	35	32.7103
RBMX2	0	genome.wustl.edu	37	X	129546425	129546425	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	X	129546425	129546425	G	A	SNP	RBMX2	ENST00000305536	human	ensembl	74_37	+1	known	missense	c.572	p.R191H	0.031	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBMX2	HGNC	ENSG00000134597				60	0	0	54	15	21.7391
IGSF1	0	genome.wustl.edu	37	X	130408789	130408789	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	X	130408789	130408789	T	C	SNP	IGSF1	ENST00000370903	human	ensembl	74_37	-1	known	missense	c.3550	p.I1184V	0.738	smart_Ig_sub,smart_Ig_sub2	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	IGSF1	HGNC	ENSG00000147255				95	0	0	70	35	33.3333
CSF2RA	0	genome.wustl.edu	37	X	1401634	1401634	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	X	1401634	1401634	T	C	SNP	CSF2RA	ENST00000417535	human	ensembl	74_37	+1	known	missense	c.38	p.L13S	0.001	NULL	pfam_IL-6_rcpt_alpha-bd,superfamily_Fibronectin_type3	-	no_errors	CSF2RA	HGNC	ENSG00000198223				235	0	0	205	28	12.0172
SLITRK2	0	genome.wustl.edu	37	X	144904763	144904763	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	X	144904763	144904763	A	G	SNP	SLITRK2	ENST00000370490	human	ensembl	74_37	+1	known	missense	c.820	p.R274G	0.999	NULL	pfam_Leu-rich_rpt,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK2	HGNC	ENSG00000185985				73	0	0	40	14	25.9259
GABRA3	0	genome.wustl.edu	37	X	151376568	151376568	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	X	151376568	151376568	T	G	SNP	GABRA3	ENST00000370314	human	ensembl	74_37	-1	known	missense	c.683	p.N228T	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_GABAAa_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABBAa3_rcpt,prints_GABAA_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRA3	HGNC	ENSG00000011677				62	0	0	58	22	27.5
NSDHL	0	genome.wustl.edu	37	X	152037483	152037483	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	X	152037483	152037483	T	A	SNP	NSDHL	ENST00000370274	human	ensembl	74_37	+1	known	missense	c.945	p.S315R	0.679	NULL	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_dTDP_dehydrorham_reduct,pfam_Male_sterile_NAD-bd,pfam_Polysac_CapD-like,pfam_NmrA	-	no_errors	NSDHL	HGNC	ENSG00000147383				52	0	0	23	15	39.4737
IDH3G	0	genome.wustl.edu	37	X	153053045	153053045	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	X	153053045	153053045	G	A	SNP	IDH3G	ENST00000217901	human	ensembl	74_37	-1	known	missense	c.548	p.A183V	0.997	pfam_IsoPropMal-DH-like_dom,tigrfam_Isocitrate_DH_NAD	pfam_IsoPropMal-DH-like_dom,tigrfam_Isocitrate_DH_NAD	-	no_errors	IDH3G	HGNC	ENSG00000067829				12	0	0	16	8	33.3333
SSR4	0	genome.wustl.edu	37	X	153063226	153063226	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	X	153063226	153063226	A	G	SNP	SSR4	ENST00000320857	human	ensembl	74_37	+1	known	missense	c.308	p.E103G	1.000	pfam_TRAP-delta	pfam_TRAP-delta	-	no_errors	SSR4	HGNC	ENSG00000180879				8	0	0	7	2	22.2222
DNASE1L1	0	genome.wustl.edu	37	X	153631964	153631964	+	Splice_Site	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	X	153631964	153631964	C	T	SNP	DNASE1L1	ENST00000014935	human	ensembl	74_37	-1	known	splice_site	c.312-1	e4-1	0.841	-	-	-	no_errors	DNASE1L1	HGNC	ENSG00000013563				33	0	0	27	9	25
IL9R	0	genome.wustl.edu	37	X	155232611	155232611	+	Silent	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	X	155232611	155232611	C	T	SNP	IL9R	ENST00000244174	human	ensembl	74_37	+1	known	silent	c.69	p.G23	0.452	NULL	superfamily_Fibronectin_type3	-	no_errors	IL9R	HGNC	ENSG00000124334				98	0	0	77	7	8.33333
ZRSR2	0	genome.wustl.edu	37	X	15822297	15822297	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	X	15822297	15822297	C	T	SNP	ZRSR2	ENST00000307771	human	ensembl	74_37	+1	known	nonsense	c.376	p.R126*	0.815	NULL	pfam_Znf_CCCH,pfam_RRM_dom,smart_Znf_CCCH,smart_RRM_dom_euk,pfscan_RRM_dom,prints_U2_small	-	no_errors	ZRSR2	HGNC	ENSG00000169249				30	0	0	32	7	17.9487
DUSP21	0	genome.wustl.edu	37	X	44703423	44703423	+	Silent	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	X	44703423	44703423	G	A	SNP	DUSP21	ENST00000339042	human	ensembl	74_37	+1	known	silent	c.45	p.Q15	0.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP_famB,prints_Atypical_DUSP	-	no_errors	DUSP21	HGNC	ENSG00000189037				33	0	0	23	17	42.5
PPP1R3F	0	genome.wustl.edu	37	X	49143388	49143388	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	X	49143388	49143388	G	A	SNP	PPP1R3F	ENST00000055335	human	ensembl	74_37	+1	known	missense	c.2236	p.A746T	0.031	NULL	pfam_CBM_21,pfscan_CBM_21	-	no_errors	PPP1R3F	HGNC	ENSG00000049769				41	0	0	28	11	28.2051
ZDHHC15	0	genome.wustl.edu	37	X	74651314	74651314	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	X	74651314	74651314	G	A	SNP	ZDHHC15	ENST00000373367	human	ensembl	74_37	-1	known	missense	c.421	p.R141C	1.000	pfam_Znf_DHHC_palmitoyltrfase,superfamily_Plexin-like_fold,pfscan_Znf_DHHC_palmitoyltrfase	pfam_Znf_DHHC_palmitoyltrfase,superfamily_Plexin-like_fold,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC15	HGNC	ENSG00000102383				19	0	0	17	6	26.087
HDX	0	genome.wustl.edu	37	X	83616610	83616610	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	X	83616610	83616610	C	T	SNP	HDX	ENST00000297977	human	ensembl	74_37	-1	known	missense	c.1316	p.R439H	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	HDX	HGNC	ENSG00000165259				16	0	0	10	3	23.0769
KLHL4	0	genome.wustl.edu	37	X	86919768	86919768	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	X	86919768	86919768	G	T	SNP	KLHL4	ENST00000373114	human	ensembl	74_37	+1	known	missense	c.1930	p.D644Y	1.000	pfam_Kelch_1,smart_Kelch_1	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KLHL4	HGNC	ENSG00000102271				24	0	0	19	13	40.625
PCDH11X	0	genome.wustl.edu	37	X	91132491	91132491	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	X	91132491	91132491	C	A	SNP	PCDH11X	ENST00000373094	human	ensembl	74_37	+1	known	missense	c.1252	p.L418M	0.888	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH11X	HGNC	ENSG00000102290				87	0	0	65	23	26.1364
NLGN4Y	0	genome.wustl.edu	37	Y	16953056	16953056	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	Y	16953056	16953056	A	G	SNP	NLGN4Y	ENST00000382868	human	ensembl	74_37	+1	known	missense	c.2536	p.M846V	1.000	NULL	pfam_CarbesteraseB,prints_Neuroligin	-	no_errors	NLGN4Y	HGNC	ENSG00000165246				54	0	0	28	18	39.1304
TTTY11	0	genome.wustl.edu	37	Y	8657060	8657060	+	RNA	SNP	G	G	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	Y	8657060	8657060	G	A	SNP	TTTY11	ENST00000253470	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.916	-	-	-	no_errors	TTTY11	HGNC	ENSG00000180910				12	0	0	11	3	21.4286
HIAT1	0	genome.wustl.edu	37	1	100534034	100534034	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	100534034	100534034	A	-	DEL	HIAT1	ENST00000370152	human	ensembl	74_37	+1	known	frame_shift_del	c.711	p.V240fs	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Tet-R_TetA/multi-R_MdtG	-	no_errors	HIAT1	HGNC	ENSG00000156875				83	0	0	105	16	13.2231
NTNG1	0	genome.wustl.edu	37	1	107937876	107937878	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	107937876	107937878	AAG	-	DEL	NTNG1	ENST00000370068	human	ensembl	74_37	+1	known	in_frame_del	c.988_990	p.K331in_frame_del	1.000:1.000:1.000	pfam_EGF_laminin,smart_EGF_laminin	pfam_Laminin_N,pfam_EGF_laminin,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	NTNG1	HGNC	ENSG00000162631				134	0	0	129	11	7.85714
SARS	0	genome.wustl.edu	37	1	109772056	109772057	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	109772056	109772057	-	A	INS	SARS	ENST00000369923	human	ensembl	74_37	+1	known	frame_shift_ins	c.309_310	p.V105fs	0.992:1.000	superfamily_tRNA-bd_arm,pirsf_Ser-tRNA-ligase_type_1,tigrfam_Ser-tRNA-ligase_type_1	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Ser-tRNA-synth_1_N,superfamily_tRNA-bd_arm,pirsf_Ser-tRNA-ligase_type_1,pfscan_aa-tRNA-synth_II,prints_Ser-tRNA-ligase_type_1,tigrfam_Ser-tRNA-ligase_type_1	-	no_errors	SARS	HGNC	ENSG00000031698				334	0	0	320	29	8.30946
PHTF1	0	genome.wustl.edu	37	1	114248546	114248546	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	114248546	114248546	A	-	DEL	PHTF1	ENST00000369604	human	ensembl	74_37	-1	known	frame_shift_del	c.1637	p.F546fs	1.000	NULL	pfam_TF_homeodomain_male	-	no_errors	PHTF1	HGNC	ENSG00000116793				81	0	0	98	9	8.41121
CSDE1	0	genome.wustl.edu	37	1	115268840	115268841	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	115268840	115268841	-	A	INS	CSDE1	ENST00000369530	human	ensembl	74_37	-1	known	frame_shift_ins	c.1677_1676	p.H560fs	1.000:1.000	pfam_CSP_DNA-bd,superfamily_NA-bd_OB-fold,smart_Cold_shock_prot	pfam_CSP_DNA-bd,superfamily_NA-bd_OB-fold,smart_Cold_shock_prot	-	no_errors	CSDE1	HGNC	ENSG00000009307				42	0	0	67	7	9.45946
CCNL2	0	genome.wustl.edu	37	1	1325840	1325840	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	1325840	1325840	T	-	DEL	CCNL2	ENST00000400809	human	ensembl	74_37	-1	known	frame_shift_del	c.863	p.K288fs	1.000	pfam_Cyclin_C-dom,superfamily_Cyclin-like,pirsf_Cyclin_L	pfam_Cyclin_N,pfam_Cyclin_C-dom,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_L	-	no_errors	CCNL2	HGNC	ENSG00000221978				93	0	0	108	21	16.2791
PIAS3	0	genome.wustl.edu	37	1	145578385	145578385	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	145578385	145578385	C	-	DEL	PIAS3	ENST00000393045	human	ensembl	74_37	+1	known	frame_shift_del	c.348	p.P118fs	1.000	NULL	pfam_Znf_MIZ,smart_SAP_dom,pfscan_Znf_MIZ,pfscan_SAP_dom	-	no_errors	PIAS3	HGNC	ENSG00000131788				94	0	0	73	4	5.19481
CD247	0	genome.wustl.edu	37	1	167402286	167402286	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	167402286	167402286	C	-	DEL	CD247	ENST00000362089	human	ensembl	74_37	-1	known	frame_shift_del	c.404	p.G135fs	1.000	pfscan_Phos_immunorcpt_sig_ITAM	pfam_Phos_immunorcpt_sig_ITAM,pfam_CR3_zeta/IgE_Fc_rcpt_gamma,smart_Phos_immunorcpt_sig_ITAM,pfscan_Phos_immunorcpt_sig_ITAM	-	no_errors	CD247	HGNC	ENSG00000198821				47	0	0	45	8	15.0943
ADCY10	0	genome.wustl.edu	37	1	167778957	167778958	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	167778957	167778958	-	T	INS	ADCY10	ENST00000367851	human	ensembl	74_37	-1	known	frame_shift_ins	c.4791_4790	p.N1597fs	1.000:1.000	pirsf_Adenylate_cylcase_typ10	pfam_A/G_cyclase,superfamily_A/G_cyclase,superfamily_P-loop_NTPase,pirsf_Adenylate_cylcase_typ10,pfscan_A/G_cyclase	-	no_errors	ADCY10	HGNC	ENSG00000143199				106	0	0	125	14	10.0719
CCDC181	0	genome.wustl.edu	37	1	169388360	169388360	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	169388360	169388360	T	-	DEL	CCDC181	ENST00000367806	human	ensembl	74_37	-1	known	frame_shift_del	c.1106	p.K369fs	0.986	NULL	NULL	-	no_errors	CCDC181	HGNC	ENSG00000117477				42	0	0	52	10	16.129
KIFAP3	0	genome.wustl.edu	37	1	170004604	170004605	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	170004604	170004605	-	A	INS	KIFAP3	ENST00000361580	human	ensembl	74_37	-1	known	frame_shift_ins	c.608_607	p.C203fs	1.000:1.000	NULL	superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	KIFAP3	HGNC	ENSG00000075945				35	0	0	43	6	12.2449
ANKRD45	0	genome.wustl.edu	37	1	173594032	173594033	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	173594032	173594033	-	T	INS	ANKRD45	ENST00000333279	human	ensembl	74_37	-1	known	frame_shift_ins	c.624_623	p.N208fs	0.128:0.036	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD45	HGNC	ENSG00000183831				42	0	0	52	7	11.8644
NCF2	0	genome.wustl.edu	37	1	183559359	183559359	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	183559359	183559359	G	-	DEL	NCF2	ENST00000367535	human	ensembl	74_37	-1	known	frame_shift_del	c.106	p.H36fs	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_TPR_1,pfam_OPR_PB1,superfamily_SH3_domain,smart_TPR_repeat,smart_SH3_domain,smart_OPR_PB1,pfscan_SH3_domain,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_p67phox,prints_SH3_domain	-	no_errors	NCF2	HGNC	ENSG00000116701				159	0	0	170	12	6.59341
SWT1	0	genome.wustl.edu	37	1	185151116	185151116	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	185151116	185151116	A	-	DEL	SWT1	ENST00000367500	human	ensembl	74_37	+1	known	frame_shift_del	c.1065	p.S357fs	0.829	NULL	smart_PIN_dom	-	no_errors	SWT1	HGNC	ENSG00000116668				104	0	0	111	13	10.4839
UBR4	0	genome.wustl.edu	37	1	19433101	19433102	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	19433101	19433102	-	G	INS	UBR4	ENST00000375267	human	ensembl	74_37	-1	known	frame_shift_ins	c.12355_12354	p.D4119fs	1.000:0.997	superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481				111	0	0	92	9	8.91089
LGR6	0	genome.wustl.edu	37	1	202288285	202288285	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	202288285	202288285	G	-	DEL	LGR6	ENST00000367278	human	ensembl	74_37	+1	known	frame_shift_del	c.2854	p.G953fs	0.000	NULL	pfam_Leu-rich_rpt,pfam_GPCR_Rhodpsn,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn	-	no_errors	LGR6	HGNC	ENSG00000133067				37	0	0	34	4	10.5263
CR1	0	genome.wustl.edu	37	1	207696973	207696973	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	207696973	207696973	C	-	DEL	CR1	ENST00000367049	human	ensembl	74_37	+1	known	frame_shift_del	c.505	p.T171fs	0.129	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR1	HGNC	ENSG00000203710				109	0	0	115	8	6.50407
LPGAT1	0	genome.wustl.edu	37	1	211924383	211924384	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	211924383	211924384	-	G	INS	LPGAT1	ENST00000366997	human	ensembl	74_37	-1	known	frame_shift_ins	c.881_880	p.L294fs	0.999:0.944	NULL	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase	-	no_errors	LPGAT1	HGNC	ENSG00000123684				65	0	0	79	6	7.05882
ARID4B	0	genome.wustl.edu	37	1	235345419	235345419	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	235345419	235345419	T	-	DEL	ARID4B	ENST00000264183	human	ensembl	74_37	-1	known	frame_shift_del	c.2815	p.T939fs	1.000	NULL	pfam_RBB1NT,pfam_ARID/BRIGHT_DNA-bd,pfam_Tudor-knot,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Chromodomain-like,smart_Tudor,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID4B	HGNC	ENSG00000054267				86	0	0	87	16	15.534
ARID1A	0	genome.wustl.edu	37	1	27100176	27100176	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	27100176	27100176	C	-	DEL	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	frame_shift_del	c.3972	p.P1326fs	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713				85	0	0	65	8	10.9589
ARID1A	0	genome.wustl.edu	37	1	27105931	27105931	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	27105931	27105931	G	-	DEL	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	frame_shift_del	c.5542	p.D1850fs	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713				94	0	0	86	11	11.3402
ZCCHC17	0	genome.wustl.edu	37	1	31811807	31811807	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	31811807	31811807	A	-	DEL	ZCCHC17	ENST00000422613	human	ensembl	74_37	+1	known	frame_shift_del	c.157	p.N54fs	1.000	pfam_Rbsml_prot_S1_RNA-bd_dom,superfamily_NA-bd_OB-fold,smart_RNA-binding_domain_S1,pfscan_Rbsml_prot_S1_RNA-bd_dom	pfam_Rbsml_prot_S1_RNA-bd_dom,superfamily_NA-bd_OB-fold,smart_RNA-binding_domain_S1,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	ZCCHC17	HGNC	ENSG00000121766				39	0	0	51	9	15
NASP	0	genome.wustl.edu	37	1	46073054	46073055	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	46073054	46073055	-	A	INS	NASP	ENST00000402363	human	ensembl	74_37	+1	known	frame_shift_ins	c.477_478	p.T161fs	1.000:0.999	NULL	pfam_Tetratricopeptide_SHNi-TPR_dom,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	NASP	HGNC	ENSG00000132780				77	0	0	102	7	6.42202
PIK3R3	0	genome.wustl.edu	37	1	46521525	46521525	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	46521525	46521525	T	-	DEL	PIK3R3	ENST00000540385	human	ensembl	74_37	-1	known	frame_shift_del	c.1021	p.M341fs	1.000	prints_PI3kinase_P85	pfam_SH2,smart_SH2,pfscan_SH2,prints_PI3kinase_P85,prints_SH2	-	no_errors	PIK3R3	HGNC	ENSG00000117461				141	0	0	164	19	10.3825
FAAH	0	genome.wustl.edu	37	1	46871336	46871336	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	46871336	46871336	G	-	DEL	FAAH	ENST00000243167	human	ensembl	74_37	+1	known	frame_shift_del	c.655	p.G220fs	1.000	pfam_Amidase,superfamily_Amidase_dom,pirsf_Amidase_fun	pfam_Amidase,superfamily_Amidase_dom,pirsf_Amidase_fun	-	no_errors	FAAH	HGNC	ENSG00000117480				125	0	0	97	8	7.61905
WLS	0	genome.wustl.edu	37	1	68603558	68603558	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	68603558	68603558	A	-	DEL	WLS	ENST00000540432	human	ensembl	74_37	-1	known	frame_shift_del	c.1421	p.F474fs	1.000	NULL	NULL	-	no_errors	WLS	HGNC	ENSG00000116729				86	0	0	73	11	13.0952
CLCA4	0	genome.wustl.edu	37	1	87029432	87029432	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	87029432	87029432	A	-	DEL	CLCA4	ENST00000370563	human	ensembl	74_37	+1	known	frame_shift_del	c.537	p.I182fs	0.000	pfam_Cl_channel_Ca,tigrfam_CaCC_prot	pfam_Cl_channel_Ca,pfam_DUF1973,pfam_VWF_A,superfamily_Fibronectin_type3,smart_VWF_A,pfscan_VWF_A,tigrfam_CaCC_prot	-	no_errors	CLCA4	HGNC	ENSG00000016602				66	0	0	80	6	6.97674
BCAR3	0	genome.wustl.edu	37	1	94032937	94032937	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	1	94032937	94032937	T	-	DEL	BCAR3	ENST00000260502	human	ensembl	74_37	-1	known	frame_shift_del	c.2198	p.N733fs	0.995	superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_SH2,pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_SH2,smart_RasGRF_CDC25,pfscan_SH2,pfscan_RasGRF_CDC25	-	no_errors	BCAR3	HGNC	ENSG00000137936				93	0	0	81	6	6.89655
ZDHHC6	0	genome.wustl.edu	37	10	114200298	114200298	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	114200298	114200298	A	-	DEL	ZDHHC6	ENST00000369405	human	ensembl	74_37	-1	known	frame_shift_del	c.675	p.F225fs	0.999	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfam_SH3_2,superfamily_SH3_domain,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC6	HGNC	ENSG00000023041				94	0	0	104	13	11.1111
TRUB1	0	genome.wustl.edu	37	10	116730192	116730192	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	116730192	116730192	C	-	DEL	TRUB1	ENST00000298746	human	ensembl	74_37	+1	known	frame_shift_del	c.589	p.L199fs	1.000	pfam_PsdUridine_synth,superfamily_PsdUridine_synth_cat_dom,tigrfam_tRNA_psdUridine_synth_TruB	pfam_PsdUridine_synth,superfamily_PsdUridine_synth_cat_dom,tigrfam_tRNA_psdUridine_synth_TruB	-	no_errors	TRUB1	HGNC	ENSG00000165832				141	0	0	151	14	8.48485
IKZF5	0	genome.wustl.edu	37	10	124758127	124758127	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	124758127	124758127	T	-	DEL	IKZF5	ENST00000368886	human	ensembl	74_37	-1	known	frame_shift_del	c.15	p.K5fs	0.996	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	IKZF5	HGNC	ENSG00000095574				58	0	0	104	6	5.45455
FRMD4A	0	genome.wustl.edu	37	10	13708227	13708227	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	13708227	13708227	T	-	DEL	FRMD4A	ENST00000357447	human	ensembl	74_37	-1	known	frame_shift_del	c.1473	p.K491fs	1.000	pfam_DUF3338	pfam_DUF3338,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam	-	no_errors	FRMD4A	HGNC	ENSG00000151474				72	0	0	71	9	11.25
NSUN6	0	genome.wustl.edu	37	10	18834895	18834895	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	18834895	18834895	A	-	DEL	NSUN6	ENST00000377304	human	ensembl	74_37	-1	known	frame_shift_del	c.1377	p.F459fs	0.980	prints_RCMT	pfam_Fmu/NOL1/Nop2p,pfam_rRNA_MeTrfase_FtsJ_dom,pfam_PUA,superfamily_PUA-like_domain,pfscan_PUA,prints_RCMT	-	no_errors	NSUN6	HGNC	ENSG00000241058				134	0	0	145	17	10.4938
PRKG1	0	genome.wustl.edu	37	10	54048595	54048595	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	54048595	54048595	A	-	DEL	PRKG1	ENST00000373980	human	ensembl	74_37	+1	known	frame_shift_del	c.1819	p.K608fs	1.000	pirsf_cGMP-dependent_protein_kinase,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_cGMP-dependent_protein_kinase,pfam_Prot_kinase_dom,pfam_cNMP-bd_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,prints_cGMP_dep_kinase,prints_cAMP/cGMP_kin,pfscan_cNMP-bd_dom,pfscan_Prot_kinase_dom	-	no_errors	PRKG1	HGNC	ENSG00000185532				52	0	0	61	8	11.5942
FAM208B	0	genome.wustl.edu	37	10	5790076	5790076	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	5790076	5790076	A	-	DEL	FAM208B	ENST00000328090	human	ensembl	74_37	+1	known	frame_shift_del	c.4692	p.K1565fs	0.000	NULL	pfam_DUF3715,pfam_DUF3699	-	no_errors	FAM208B	HGNC	ENSG00000108021				78	0	0	75	12	13.7931
TET1	0	genome.wustl.edu	37	10	70332273	70332273	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	70332273	70332273	A	-	DEL	TET1	ENST00000373644	human	ensembl	74_37	+1	known	frame_shift_del	c.178	p.T62fs	1.000	NULL	pfam_Znf_CXXC,pfscan_Znf_CXXC	-	no_errors	TET1	HGNC	ENSG00000138336				130	0	0	131	19	12.6667
C10orf11	0	genome.wustl.edu	37	10	77795828	77795829	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	77795828	77795829	-	G	INS	C10orf11	ENST00000372499	human	ensembl	74_37	+1	known	frame_shift_ins	c.110_111	p.D39fs	0.998:0.389	NULL	NULL	-	no_errors	C10orf11	HGNC	ENSG00000148655				100	0	0	113	7	5.83333
KCNMA1	0	genome.wustl.edu	37	10	78771791	78771791	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	78771791	78771791	A	-	DEL	KCNMA1	ENST00000406533	human	ensembl	74_37	-1	known	frame_shift_del	c.2038	p.Y680fs	1.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_RCK_N,prints_K_chnl_Ca-activ_BK_asu,prints_K_chnl	-	no_errors	KCNMA1	HGNC	ENSG00000156113				126	0	0	117	13	10
PTEN	0	genome.wustl.edu	37	10	89693003	89693003	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	89693003	89693003	A	-	DEL	PTEN	ENST00000371953	human	ensembl	74_37	+1	known	frame_shift_del	c.487	p.K164fs	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_dom,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862				92	0	0	111	12	9.7561
IFIT1	0	genome.wustl.edu	37	10	91163033	91163033	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	10	91163033	91163033	A	-	DEL	IFIT1	ENST00000371804	human	ensembl	74_37	+1	known	frame_shift_del	c.1001	p.K336fs	0.004	pfscan_TPR-contain_dom	pfam_TPR_2,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	IFIT1	HGNC	ENSG00000185745				76	0	0	94	5	5.05051
RDX	0	genome.wustl.edu	37	11	110104136	110104137	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	110104136	110104137	-	G	INS	RDX	ENST00000530749	human	ensembl	74_37	-1	known	frame_shift_ins	c.1413_1412	p.P472fs	1.000:1.000	pirsf_ERM,pfam_ERM_C_dom,superfamily_Adenylate_cyclase-assoc_CAP_N	pirsf_ERM,pfam_ERM_C_dom,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,superfamily_Moesin_tail,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Band_41_domain,prints_Ez/rad/moesin_like,prints_Band_41_fam,pfscan_FERM_domain	-	no_errors	RDX	HGNC	ENSG00000137710				123	0	0	109	7	6.03448
APOA1	0	genome.wustl.edu	37	11	116707832	116707832	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	116707832	116707832	G	-	DEL	APOA1	ENST00000236850	human	ensembl	74_37	-1	known	frame_shift_del	c.85	p.Q29fs	0.896	NULL	pfam_ApoA1_A4_E	-	no_errors	APOA1	HGNC	ENSG00000118137				77	0	0	59	5	7.8125
IL10RA	0	genome.wustl.edu	37	11	117864040	117864040	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	117864040	117864040	C	-	DEL	IL10RA	ENST00000227752	human	ensembl	74_37	+1	known	frame_shift_del	c.452	p.A153fs	0.029	superfamily_Fibronectin_type3	superfamily_Fibronectin_type3	-	no_errors	IL10RA	HGNC	ENSG00000110324				71	0	0	68	11	13.9241
SORL1	0	genome.wustl.edu	37	11	121475905	121475905	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	121475905	121475905	A	-	DEL	SORL1	ENST00000260197	human	ensembl	74_37	+1	known	frame_shift_del	c.4735	p.M1581fs	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_LDrepeatLR_classA_rpt,pfam_Fibronectin_type3,pfam_LDLR_classB_rpt,superfamily_Fibronectin_type3,superfamily_LDrepeatLR_classA_rpt,smart_VPS10,smart_LDLR_classB_rpt,smart_LDrepeatLR_classA_rpt,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	SORL1	HGNC	ENSG00000137642				124	0	0	94	17	15.3153
C11orf63	0	genome.wustl.edu	37	11	122817463	122817463	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	122817463	122817463	A	-	DEL	C11orf63	ENST00000227349	human	ensembl	74_37	+1	known	frame_shift_del	c.1892	p.K632fs	0.978	NULL	NULL	-	no_errors	C11orf63	HGNC	ENSG00000109944				103	0	0	106	17	13.8211
CCDC15	0	genome.wustl.edu	37	11	124845049	124845049	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	124845049	124845049	A	-	DEL	CCDC15	ENST00000344762	human	ensembl	74_37	+1	known	frame_shift_del	c.574	p.K194fs	0.000	NULL	NULL	-	no_errors	CCDC15	HGNC	ENSG00000149548				35	0	0	41	6	12.766
CKAP5	0	genome.wustl.edu	37	11	46765605	46765605	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	46765605	46765605	T	-	DEL	CKAP5	ENST00000415402	human	ensembl	74_37	-1	known	frame_shift_del	c.6088	p.R2030fs	1.000	NULL	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,superfamily_Homing_endonucl,pfscan_HEAT_type_2	-	no_errors	CKAP5	HGNC	ENSG00000175216				48	0	0	52	6	10.3448
OR51E2	0	genome.wustl.edu	37	11	4703475	4703475	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	4703475	4703475	A	-	DEL	OR51E2	ENST00000396950	human	ensembl	74_37	-1	known	frame_shift_del	c.467	p.F156fs	0.027	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51E2	HGNC	ENSG00000167332				69	0	0	65	5	7.14286
TRIM51HP	0	genome.wustl.edu	37	11	55065032	55065032	+	RNA	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	55065032	55065032	T	-	DEL	TRIM51HP	ENST00000526016	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.010	-	-	-	no_errors	TRIM51HP	HGNC	ENSG00000166007				69	0	0	59	5	7.8125
OR52N5	0	genome.wustl.edu	37	11	5799652	5799652	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	5799652	5799652	A	-	DEL	OR52N5	ENST00000317093	human	ensembl	74_37	-1	known	frame_shift_del	c.213	p.F71fs	0.971	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	-	no_errors	OR52N5	HGNC	ENSG00000181009				79	0	0	39	11	22
OR52N2	0	genome.wustl.edu	37	11	5842336	5842336	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	5842336	5842336	T	-	DEL	OR52N2	ENST00000317037	human	ensembl	74_37	+1	known	frame_shift_del	c.771	p.F259fs	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52N2	HGNC	ENSG00000180988				120	0	0	110	11	9.09091
GANAB	0	genome.wustl.edu	37	11	62407174	62407174	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	11	62407174	62407174	A	-	DEL	GANAB	ENST00000346178	human	ensembl	74_37	-1	known	frame_shift_del	c.68	p.L23fs	0.988	NULL	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom	-	no_errors	GANAB	HGNC	ENSG00000089597				101	0	0	122	11	8.27068
SCYL2	0	genome.wustl.edu	37	12	100685289	100685290	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	100685289	100685290	-	G	INS	SCYL2	ENST00000360820	human	ensembl	74_37	+1	known	frame_shift_ins	c.186_187	p.V62fs	1.000:1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	SCYL2	HGNC	ENSG00000136021				62	0	0	67	12	15.1899
TAS2R50	0	genome.wustl.edu	37	12	11139432	11139432	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	11139432	11139432	A	-	DEL	TAS2R50	ENST00000506868	human	ensembl	74_37	-1	known	frame_shift_del	c.28	p.S10fs	0.001	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R50	HGNC	ENSG00000212126				78	0	0	89	9	9.18367
FBXO21	0	genome.wustl.edu	37	12	117624320	117624320	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	117624320	117624320	A	-	DEL	FBXO21	ENST00000330622	human	ensembl	74_37	-1	known	frame_shift_del	c.432	p.F144fs	1.000	superfamily_F-box_dom	pfam_Hemimethylated_DNA-bd_dom,superfamily_Hemimethylated_DNA-bd_dom,superfamily_F-box_dom,tigrfam_Hemimethylated_DNA-bd_dom	-	no_errors	FBXO21	HGNC	ENSG00000135108				67	0	0	68	7	9.33333
KDM2B	0	genome.wustl.edu	37	12	122017957	122017957	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	122017957	122017957	T	-	DEL	KDM2B	ENST00000377069	human	ensembl	74_37	-1	known	frame_shift_del	c.1	p.M1fs	1.000	NULL	pfam_Znf_CXXC,pfam_F-box_dom,pfam_JmjC_dom,superfamily_Znf_FYVE_PHD,smart_JmjC_dom,smart_Znf_PHD,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KDM2B	HGNC	ENSG00000089094				148	0	0	189	24	11.2676
KNTC1	0	genome.wustl.edu	37	12	123087620	123087620	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	123087620	123087620	A	-	DEL	KNTC1	ENST00000333479	human	ensembl	74_37	+1	known	frame_shift_del	c.4931	p.K1646fs	1.000	pfam_RZZ-complex_KNTC1/ROD_C	pfam_RZZ-complex_KNTC1/ROD_C,superfamily_Quino_amine_DH_bsu,superfamily_WD40_repeat_dom,superfamily_PAH	-	no_errors	KNTC1	HGNC	ENSG00000184445				58	0	0	57	5	8.06452
LRRK2	0	genome.wustl.edu	37	12	40713870	40713870	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	40713870	40713870	A	-	DEL	LRRK2	ENST00000298910	human	ensembl	74_37	+1	known	frame_shift_del	c.4908	p.R1639fs	0.408	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906				79	0	0	86	14	14
DYRK4	0	genome.wustl.edu	37	12	4719362	4719362	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	4719362	4719362	A	-	DEL	DYRK4	ENST00000010132	human	ensembl	74_37	+1	known	frame_shift_del	c.1057	p.R355fs	1.000	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	DYRK4	HGNC	ENSG00000010219				108	0	0	110	13	10.5691
KCNA6	0	genome.wustl.edu	37	12	4919544	4919544	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	4919544	4919544	C	-	DEL	KCNA6	ENST00000280684	human	ensembl	74_37	+1	known	frame_shift_del	c.337	p.L114fs	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.6,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA6	HGNC	ENSG00000151079				82	0	0	69	5	6.75676
MYO1A	0	genome.wustl.edu	37	12	57422573	57422573	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	57422573	57422573	T	-	DEL	MYO1A	ENST00000300119	human	ensembl	74_37	-1	known	frame_shift_del	c.3098	p.K1033fs	1.000	pfam_Myosin_tail_2	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYO1A	HGNC	ENSG00000166866				134	0	0	103	17	14.1667
INHBE	0	genome.wustl.edu	37	12	57850545	57850546	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	57850545	57850546	CT	-	DEL	INHBE	ENST00000266646	human	ensembl	74_37	+1	known	frame_shift_del	c.967_968	p.L325fs	0.988:0.998	pfam_TGF-b_C,smart_TGF-b_C	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_betaC,prints_Inhibin_asu	-	no_errors	INHBE	HGNC	ENSG00000139269				89	0	0	89	9	9.18367
MON2	0	genome.wustl.edu	37	12	62918963	62918963	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	62918963	62918963	C	-	DEL	MON2	ENST00000393630	human	ensembl	74_37	+1	known	frame_shift_del	c.1209	p.P405fs	0.885	NULL	pfam_DUF1981_Sec7_assoc,superfamily_ARM-type_fold	-	no_errors	MON2	HGNC	ENSG00000061987				93	0	0	103	7	6.36364
MON2	0	genome.wustl.edu	37	12	62960172	62960172	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	62960172	62960172	A	-	DEL	MON2	ENST00000393630	human	ensembl	74_37	+1	known	frame_shift_del	c.4268	p.T1425fs	1.000	superfamily_ARM-type_fold	pfam_DUF1981_Sec7_assoc,superfamily_ARM-type_fold	-	no_errors	MON2	HGNC	ENSG00000061987				131	0	0	127	13	9.28571
XPOT	0	genome.wustl.edu	37	12	64812755	64812755	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	64812755	64812755	T	-	DEL	XPOT	ENST00000332707	human	ensembl	74_37	+1	known	frame_shift_del	c.370	p.F126fs	1.000	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	XPOT	HGNC	ENSG00000184575				129	0	0	91	21	18.75
OSBPL8	0	genome.wustl.edu	37	12	76780391	76780392	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	76780391	76780392	-	T	INS	OSBPL8	ENST00000261183	human	ensembl	74_37	-1	known	frame_shift_ins	c.1402_1401	p.W467fs	1.000:0.999	pfam_Oxysterol-bd	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL8	HGNC	ENSG00000091039				65	0	0	80	12	13.0435
TMTC3	0	genome.wustl.edu	37	12	88584242	88584242	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	12	88584242	88584242	A	-	DEL	TMTC3	ENST00000266712	human	ensembl	74_37	+1	known	frame_shift_del	c.1549	p.K518fs	1.000	pfscan_TPR-contain_dom	pfam_TPR_2,pfam_TPR_1,pfam_DUF1736,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC3	HGNC	ENSG00000139324				64	0	0	54	6	10
NALCN	0	genome.wustl.edu	37	13	101742086	101742086	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	13	101742086	101742086	A	-	DEL	NALCN	ENST00000251127	human	ensembl	74_37	-1	known	frame_shift_del	c.3417	p.F1139fs	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom	-	no_errors	NALCN	HGNC	ENSG00000102452				150	0	0	133	22	14.1935
TMEM255B	0	genome.wustl.edu	37	13	114514859	114514859	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	13	114514859	114514859	C	-	DEL	TMEM255B	ENST00000375353	human	ensembl	74_37	+1	known	frame_shift_del	c.964	p.Y324fs	0.994	NULL	NULL	-	no_errors	TMEM255B	HGNC	ENSG00000184497				89	0	0	58	5	7.93651
RASA3	0	genome.wustl.edu	37	13	114751195	114751195	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	13	114751195	114751195	G	-	DEL	RASA3	ENST00000334062	human	ensembl	74_37	-1	known	frame_shift_del	c.2320	p.Q774fs	1.000	NULL	pfam_RasGAP,pfam_C2_dom,pfam_Znf_Btk_motif,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_C2_dom,smart_RasGAP,smart_Pleckstrin_homology,smart_Znf_Btk_motif,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_Znf_Btk_motif,pfscan_RasGAP,prints_Znf_Btk_motif	-	no_errors	RASA3	HGNC	ENSG00000185989				146	0	0	106	11	9.40171
SACS	0	genome.wustl.edu	37	13	23906662	23906662	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	13	23906662	23906662	T	-	DEL	SACS	ENST00000382292	human	ensembl	74_37	-1	known	frame_shift_del	c.11353	p.R3785fs	0.988	NULL	pfam_HEPN,pfam_Ubiquitin_dom,superfamily_HATPase_ATP-bd,superfamily_DnaJ_domain,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_domain,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835				111	0	0	92	11	10.6796
SACS	0	genome.wustl.edu	37	13	23909221	23909222	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	13	23909221	23909222	-	T	INS	SACS	ENST00000382292	human	ensembl	74_37	-1	known	frame_shift_ins	c.8794_8793	p.R2931fs	0.997:0.967	NULL	pfam_HEPN,pfam_Ubiquitin_dom,superfamily_HATPase_ATP-bd,superfamily_DnaJ_domain,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_domain,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835				127	0	0	101	8	7.33945
SACS	0	genome.wustl.edu	37	13	23915477	23915477	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	13	23915477	23915477	T	-	DEL	SACS	ENST00000382292	human	ensembl	74_37	-1	known	frame_shift_del	c.2538	p.K846fs	1.000	NULL	pfam_HEPN,pfam_Ubiquitin_dom,superfamily_HATPase_ATP-bd,superfamily_DnaJ_domain,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_domain,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835				69	0	0	81	10	10.989
ANKRD20A19P	0	genome.wustl.edu	37	13	24515468	24515468	+	RNA	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	13	24515468	24515468	T	-	DEL	ANKRD20A19P	ENST00000420143	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.055	-	-	-	no_errors	ANKRD20A19P	HGNC	ENSG00000196593				100	0	0	114	15	11.6279
PABPC3	0	genome.wustl.edu	37	13	25670802	25670802	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	13	25670802	25670802	A	-	DEL	PABPC3	ENST00000281589	human	ensembl	74_37	+1	known	frame_shift_del	c.466	p.M158fs	1.000	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom,tigrfam_PABP_1234	pfam_RRM_dom,pfam_PABP_HYD,superfamily_PABP_HYD,smart_RRM_dom,smart_RRM_dom_euk,smart_PABP_HYD,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC3	HGNC	ENSG00000151846				124	0	0	140	18	11.3924
MTIF3	0	genome.wustl.edu	37	13	28014376	28014377	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	13	28014376	28014377	-	T	INS	MTIF3	ENST00000381116	human	ensembl	74_37	-1	known	frame_shift_ins	c.210_209	p.N71fs	0.000:0.000	NULL	pfam_Translation_initiation_fac_3_C,pfam_Translation_initiation_fac_3_N,superfamily_Translation_initiation_fac_3_C,superfamily_Translation_initiation_fac_3_N	-	no_errors	MTIF3	HGNC	ENSG00000122033				131	0	0	142	10	6.57895
PDS5B	0	genome.wustl.edu	37	13	33344888	33344888	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	13	33344888	33344888	A	-	DEL	PDS5B	ENST00000315596	human	ensembl	74_37	+1	known	frame_shift_del	c.4161	p.N1390fs	0.002	NULL	superfamily_ARM-type_fold	-	no_errors	PDS5B	HGNC	ENSG00000083642				40	0	0	52	4	7.14286
AKAP11	0	genome.wustl.edu	37	13	42873774	42873774	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	13	42873774	42873774	T	-	DEL	AKAP11	ENST00000025301	human	ensembl	74_37	+1	known	frame_shift_del	c.892	p.S300fs	0.000	NULL	NULL	-	no_errors	AKAP11	HGNC	ENSG00000023516				120	0	0	91	8	8.08081
NUFIP1	0	genome.wustl.edu	37	13	45554925	45554925	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	13	45554925	45554925	A	-	DEL	NUFIP1	ENST00000379161	human	ensembl	74_37	-1	known	frame_shift_del	c.526	p.C176fs	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_NUFIP1_cons_dom,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	NUFIP1	HGNC	ENSG00000083635				71	0	0	67	12	15.1899
KIAA0226L	0	genome.wustl.edu	37	13	46946110	46946110	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	13	46946110	46946110	A	-	DEL	KIAA0226L	ENST00000389908	human	ensembl	74_37	-1	known	frame_shift_del	c.501	p.F167fs	0.000	NULL	NULL	-	no_errors	KIAA0226L	HGNC	ENSG00000102445				60	0	0	74	10	11.9048
RNF219	0	genome.wustl.edu	37	13	79190057	79190057	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	13	79190057	79190057	A	-	DEL	RNF219	ENST00000282003	human	ensembl	74_37	-1	known	frame_shift_del	c.1839	p.L614fs	0.951	NULL	pfscan_Znf_RING	-	no_errors	RNF219	HGNC	ENSG00000152193				99	0	0	115	15	11.5385
SLITRK6	0	genome.wustl.edu	37	13	86368997	86368997	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	13	86368997	86368997	G	-	DEL	SLITRK6	ENST00000400286	human	ensembl	74_37	-1	known	frame_shift_del	c.1647	p.H551fs	0.771	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK6	HGNC	ENSG00000184564				91	0	0	64	10	13.5135
RNF113B	0	genome.wustl.edu	37	13	98828697	98828697	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	13	98828697	98828697	T	-	DEL	RNF113B	ENST00000267291	human	ensembl	74_37	-1	known	frame_shift_del	c.794	p.N265fs	1.000	smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_CCCH,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF113B	HGNC	ENSG00000139797				123	0	0	119	15	11.194
BRF1	0	genome.wustl.edu	37	14	105692604	105692604	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	14	105692604	105692604	T	-	DEL	BRF1	ENST00000546474	human	ensembl	74_37	-1	known	frame_shift_del	c.939	p.K313fs	0.244	NULL	pfam_TFIIB_cyclin,pfam_BRF1_TBP-bd,pfam_Znf_TFIIB,superfamily_Cyclin-like,smart_Cyclin-like,pfscan_Znf_TFIIB,prints_TFIIB	-	no_errors	BRF1	HGNC	ENSG00000185024				143	0	0	135	15	10
G2E3	0	genome.wustl.edu	37	14	31074772	31074772	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	14	31074772	31074772	A	-	DEL	G2E3	ENST00000206595	human	ensembl	74_37	+1	known	frame_shift_del	c.1072	p.T361fs	0.994	superfamily_HECT	pfam_HECT,superfamily_HECT,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_HECT,pfscan_HECT	-	no_errors	G2E3	HGNC	ENSG00000092140				22	0	0	31	7	18.4211
HECTD1	0	genome.wustl.edu	37	14	31582339	31582339	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	14	31582339	31582339	T	-	DEL	HECTD1	ENST00000399332	human	ensembl	74_37	-1	known	frame_shift_del	c.6121	p.I2041fs	1.000	NULL	pfam_HECT,pfam_Sad1_UNC_C,pfam_Mib_Herc2,pfam_Ankyrin_rpt,superfamily_HECT,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,superfamily_Galactose-bd-like,smart_Ankyrin_rpt,smart_HECT,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_HECT	-	no_errors	HECTD1	HGNC	ENSG00000092148				35	0	0	38	6	13.6364
MIS18BP1	0	genome.wustl.edu	37	14	45716019	45716019	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	14	45716019	45716019	T	-	DEL	MIS18BP1	ENST00000310806	human	ensembl	74_37	-1	known	frame_shift_del	c.471	p.K157fs	0.001	NULL	pfam_SANTA,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MIS18BP1	HGNC	ENSG00000129534				86	0	0	96	11	10.2804
SOS2	0	genome.wustl.edu	37	14	50585272	50585274	+	In_Frame_Del	DEL	AGG	AGG	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	14	50585272	50585274	AGG	-	DEL	SOS2	ENST00000216373	human	ensembl	74_37	-1	known	in_frame_del	c.3789_3787	p.P1263in_frame_del	0.998:1.000:1.000	NULL	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Histone_core_D,superfamily_Ras_GEF_dom,superfamily_Histone-fold,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	SOS2	HGNC	ENSG00000100485				78	0	0	82	13	13.6842
YLPM1	0	genome.wustl.edu	37	14	75230817	75230819	+	In_Frame_Del	DEL	TCC	TCC	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	TCC	TCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	14	75230817	75230819	TCC	-	DEL	YLPM1	ENST00000325680	human	ensembl	74_37	+1	known	in_frame_del	c.625_627	p.S212in_frame_del	0.493:0.608:0.607	NULL	superfamily_P-loop_NTPase	-	no_errors	YLPM1	HGNC	ENSG00000119596				116	0	0	75	7	8.53659
EML5	0	genome.wustl.edu	37	14	89153571	89153571	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	14	89153571	89153571	G	-	DEL	EML5	ENST00000554922	human	ensembl	74_37	-1	known	frame_shift_del	c.2843	p.P948fs	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_HELP,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML5	HGNC	ENSG00000165521				31	0	0	24	5	17.2414
SERPINA1	0	genome.wustl.edu	37	14	94844885	94844885	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	14	94844885	94844885	G	-	DEL	SERPINA1	ENST00000355814	human	ensembl	74_37	-1	known	frame_shift_del	c.1158	p.E387fs	0.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINA1	HGNC	ENSG00000197249				79	0	0	91	11	10.7843
CLMN	0	genome.wustl.edu	37	14	95662949	95662949	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	14	95662949	95662949	T	-	DEL	CLMN	ENST00000298912	human	ensembl	74_37	-1	known	frame_shift_del	c.2594	p.K865fs	1.000	NULL	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	CLMN	HGNC	ENSG00000165959				71	0	0	71	8	10.1266
BDKRB1	0	genome.wustl.edu	37	14	96731010	96731011	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	14	96731010	96731011	-	C	INS	BDKRB1	ENST00000216629	human	ensembl	74_37	+1	known	frame_shift_ins	c.991_992	p.K333fs	0.000:0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Brdyknn_1_rcpt,prints_GPCR_Rhodpsn,prints_Brdyknn_rcpt	-	no_errors	BDKRB1	HGNC	ENSG00000100739				268	0	0	252	29	10.3203
EXD1	0	genome.wustl.edu	37	15	41501740	41501742	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	15	41501740	41501742	CTT	-	DEL	EXD1	ENST00000314992	human	ensembl	74_37	-1	known	in_frame_del	c.319_317	p.E106in_frame_del	1.000:0.999:1.000	pfam_3'-5'_exonuclease_dom,superfamily_RNaseH-like_dom,smart_3'-5'_exonuclease_dom	pfam_3'-5'_exonuclease_dom,superfamily_RNaseH-like_dom,smart_3'-5'_exonuclease_dom	-	no_errors	EXD1	HGNC	ENSG00000178997				41	0	0	36	6	14.2857
PLA2G4E	0	genome.wustl.edu	37	15	42302331	42302331	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	15	42302331	42302331	C	-	DEL	PLA2G4E	ENST00000413860	human	ensembl	74_37	-1	known	frame_shift_del	c.115	p.A39fs	0.000	pfscan_C2_dom	pfam_LysoPLipase_cat_dom,pfam_C2_dom,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_dom,smart_C2_dom,smart_LysoPLipase_cat_dom,pfscan_C2_dom,pfscan_LysoPLipase_cat_dom	-	no_errors	PLA2G4E	HGNC	ENSG00000188089				42	0	0	35	4	10.2564
ZNF106	0	genome.wustl.edu	37	15	42742968	42742969	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	15	42742968	42742969	-	T	INS	ZNF106	ENST00000263805	human	ensembl	74_37	-1	known	frame_shift_ins	c.1433_1432	p.T478fs	0.000:0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_Znf_C2H2-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ZNF106	HGNC	ENSG00000103994				188	0	0	201	26	11.4537
SLC12A1	0	genome.wustl.edu	37	15	48577440	48577440	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	15	48577440	48577440	A	-	DEL	SLC12A1	ENST00000380993	human	ensembl	74_37	+1	known	frame_shift_del	c.2623	p.D877fs	0.021	tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,pfam_AA_permease_N,prints_Na/K/Cl_cotranspt2,prints_Na/K/Cl_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A1	HGNC	ENSG00000074803				148	0	0	126	15	10.6383
DMXL2	0	genome.wustl.edu	37	15	51780824	51780825	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	15	51780824	51780825	-	A	INS	DMXL2	ENST00000543779	human	ensembl	74_37	-1	known	frame_shift_ins	c.4972_4971	p.Q1657fs	1.000:1.000	pfam_Rav1p_C	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL2	HGNC	ENSG00000104093				102	0	0	89	10	10.101
NARG2	0	genome.wustl.edu	37	15	60745782	60745782	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	15	60745782	60745782	A	-	DEL	NARG2	ENST00000561114	human	ensembl	74_37	-1	putative	frame_shift_del	c.1145	p.F382fs	0.000	NULL	NULL	-	no_errors	NARG2	HGNC	ENSG00000128915				34	0	0	38	11	22.449
PTPLAD1	0	genome.wustl.edu	37	15	65868694	65868695	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	15	65868694	65868695	-	A	INS	PTPLAD1	ENST00000261875	human	ensembl	74_37	+1	known	frame_shift_ins	c.1066_1067	p.K359fs	1.000:1.000	NULL	pfam_Tyr_Pase-like_PTPLA,pfam_CS_dom,superfamily_HSP20-like_chaperone,pfscan_CS_dom	-	no_errors	PTPLAD1	HGNC	ENSG00000074696				36	0	0	39	8	17.0213
KIAA1024	0	genome.wustl.edu	37	15	79750586	79750586	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	15	79750586	79750586	A	-	DEL	KIAA1024	ENST00000305428	human	ensembl	74_37	+1	known	frame_shift_del	c.2097	p.S702fs	0.527	NULL	pfam_UPF0258	-	no_errors	KIAA1024	HGNC	ENSG00000169330				161	0	0	167	15	8.24176
KIAA1199	0	genome.wustl.edu	37	15	81173394	81173394	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	15	81173394	81173394	T	-	DEL	KIAA1199	ENST00000220244	human	ensembl	74_37	+1	known	frame_shift_del	c.534	p.F180fs	0.993	NULL	pfam_G8_domain,superfamily_Pectin_lyase_fold/virulence	-	no_errors	KIAA1199	HGNC	ENSG00000103888				120	0	0	134	13	8.84354
TVP23A	0	genome.wustl.edu	37	16	10867203	10867203	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	16	10867203	10867203	A	-	DEL	TVP23A	ENST00000299866	human	ensembl	74_37	-1	known	frame_shift_del	c.420	p.F140fs	1.000	pfam_DUF846_euk	pfam_DUF846_euk	-	no_errors	TVP23A	HGNC	ENSG00000166676				94	0	0	93	10	9.70874
ARHGAP17	0	genome.wustl.edu	37	16	24942180	24942180	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	16	24942180	24942180	G	-	DEL	ARHGAP17	ENST00000289968	human	ensembl	74_37	-1	known	frame_shift_del	c.2440	p.Q814fs	0.892	NULL	pfam_BAR_dom,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_BAR_dom,smart_RhoGAP_dom,pfscan_BAR_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP17	HGNC	ENSG00000140750				190	0	0	138	15	9.80392
MVP	0	genome.wustl.edu	37	16	29855917	29855918	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	16	29855917	29855918	-	G	INS	MVP	ENST00000357402	human	ensembl	74_37	+1	known	frame_shift_ins	c.1738_1739	p.A582fs	0.997:1.000	pfam_MVP_shoulder	pfam_Vault_N,pfam_MVP_shoulder	-	no_errors	MVP	HGNC	ENSG00000013364				69	0	0	49	4	7.54717
CTCF	0	genome.wustl.edu	37	16	67645339	67645339	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	16	67645339	67645339	A	-	DEL	CTCF	ENST00000264010	human	ensembl	74_37	+1	known	frame_shift_del	c.604	p.T204fs	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CTCF	HGNC	ENSG00000102974				133	0	0	134	11	7.58621
ZNF23	0	genome.wustl.edu	37	16	71483562	71483562	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	16	71483562	71483562	A	-	DEL	ZNF23	ENST00000357254	human	ensembl	74_37	-1	known	frame_shift_del	c.366	p.F122fs	0.000	NULL	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF23	HGNC	ENSG00000167377				154	0	0	134	23	14.6497
MARVELD3	0	genome.wustl.edu	37	16	71668169	71668170	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	16	71668169	71668170	-	T	INS	MARVELD3	ENST00000268485	human	ensembl	74_37	+1	known	frame_shift_ins	c.669_670	p.G223fs	0.102:1.000	NULL	NULL	-	no_errors	MARVELD3	HGNC	ENSG00000140832				113	0	0	122	11	8.27068
ABR	0	genome.wustl.edu	37	17	1028559	1028559	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	17	1028559	1028559	C	-	DEL	ABR	ENST00000302538	human	ensembl	74_37	-1	known	frame_shift_del	c.205	p.D69fs	1.000	superfamily_DH-domain	pfam_RhoGAP_dom,pfam_DH-domain,pfam_Pleckstrin_homology,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_DH-domain,superfamily_C2_dom,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_dom,smart_RhoGAP_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom,pfscan_DH-domain	-	no_errors	ABR	HGNC	ENSG00000159842				56	0	0	49	8	14.0351
SPECC1	0	genome.wustl.edu	37	17	20108263	20108263	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	17	20108263	20108263	A	-	DEL	SPECC1	ENST00000261503	human	ensembl	74_37	+1	known	frame_shift_del	c.901	p.N303fs	0.000	NULL	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	SPECC1	HGNC	ENSG00000128487				158	0	0	158	30	15.9574
TSR1	0	genome.wustl.edu	37	17	2239337	2239339	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	17	2239337	2239339	CTT	-	DEL	TSR1	ENST00000301364	human	ensembl	74_37	-1	known	in_frame_del	c.195_193	p.K65in_frame_del	0.999:1.000:1.000	NULL	pfam_BMS1_TSR1_C,pfam_AARP2CN,superfamily_Transl_B-barrel,smart_AARP2CN	-	no_errors	TSR1	HGNC	ENSG00000167721				93	0	0	100	12	10.7143
TMEM97	0	genome.wustl.edu	37	17	26653807	26653808	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	17	26653807	26653808	AA	-	DEL	TMEM97	ENST00000226230	human	ensembl	74_37	+1	known	frame_shift_del	c.519_520	p.K176fs	1.000:1.000	pirsf_Transmembrane_6/97	pfam_Transmembrane_6/97,pirsf_Transmembrane_6/97	-	no_errors	TMEM97	HGNC	ENSG00000109084				94	0	0	98	10	9.25926
KRT222	0	genome.wustl.edu	37	17	38818272	38818272	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	17	38818272	38818272	T	-	DEL	KRT222	ENST00000394052	human	ensembl	74_37	-1	known	frame_shift_del	c.121	p.M41fs	1.000	pfam_IF	pfam_IF,prints_Keratin_I	-	no_errors	KRT222	HGNC	ENSG00000213424				122	0	0	122	9	6.87023
STAT5B	0	genome.wustl.edu	37	17	40370236	40370236	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	17	40370236	40370236	G	-	DEL	STAT5B	ENST00000293328	human	ensembl	74_37	-1	known	frame_shift_del	c.1102	p.Q368fs	1.000	pfam_STAT_TF_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT5B	HGNC	ENSG00000173757				53	0	0	55	11	16.6667
RNF43	0	genome.wustl.edu	37	17	56435161	56435161	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	17	56435161	56435161	C	-	DEL	RNF43	ENST00000407977	human	ensembl	74_37	-1	known	frame_shift_del	c.1976	p.G659fs	0.900	NULL	pfam_Znf_C3HC4_RING-type,superfamily_PAS,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF43	HGNC	ENSG00000108375				87	0	0	76	16	17.3913
TMEM104	0	genome.wustl.edu	37	17	72832360	72832361	+	Frame_Shift_Ins	INS	-	-	CG			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	17	72832360	72832361	-	CG	INS	TMEM104	ENST00000335464	human	ensembl	74_37	+1	known	frame_shift_ins	c.1025_1026	p.C345fs	1.000:0.987	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	TMEM104	HGNC	ENSG00000109066				197	0	0	182	13	6.66667
ST6GALNAC1	0	genome.wustl.edu	37	17	74622385	74622386	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	17	74622385	74622386	-	T	INS	ST6GALNAC1	ENST00000156626	human	ensembl	74_37	-1	known	frame_shift_ins	c.1401_1400	p.N467fs	0.001:0.000	pfam_Glyco_trans_29	pfam_Glyco_trans_29	-	no_errors	ST6GALNAC1	HGNC	ENSG00000070526				38	0	0	36	8	18.1818
CTAGE1	0	genome.wustl.edu	37	18	19995706	19995706	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	18	19995706	19995706	G	-	DEL	CTAGE1	ENST00000391403	human	ensembl	74_37	-1	known	frame_shift_del	c.2069	p.P690fs	0.300	NULL	NULL	-	no_errors	CTAGE1	HGNC	ENSG00000212710				136	0	0	146	17	10.4294
ENSG00000266489	0	genome.wustl.edu	37	18	22097066	22097075	+	RNA	DEL	GTGTGTGCGC	GTGTGTGCGC	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	GTGTGTGCGC	GTGTGTGCGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	18	22097066	22097075	GTGTGTGCGC	-	DEL	ENSG00000266489	ENST00000581648	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.018:0.028:0.033:0.034:0.035:0.036:0.036:0.036:0.035:0.035	-	-	-	no_errors	RP11-178F10.3	Clone_based_vega_gene	ENSG00000266489				10	0	0	5	3	37.5
FHOD3	0	genome.wustl.edu	37	18	34205516	34205516	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	18	34205516	34205516	C	-	DEL	FHOD3	ENST00000257209	human	ensembl	74_37	+1	known	frame_shift_del	c.1000	p.S336fs	0.999	superfamily_ARM-type_fold	pfam_FH2_Formin,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FHOD3	HGNC	ENSG00000134775				75	0	0	38	5	11.6279
WDR7	0	genome.wustl.edu	37	18	54424020	54424020	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	18	54424020	54424020	T	-	DEL	WDR7	ENST00000254442	human	ensembl	74_37	+1	known	frame_shift_del	c.2196	p.L734fs	1.000	NULL	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR7	HGNC	ENSG00000091157				82	0	0	89	10	10.101
ZNF236	0	genome.wustl.edu	37	18	74616365	74616365	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	18	74616365	74616365	T	-	DEL	ZNF236	ENST00000253159	human	ensembl	74_37	+1	known	frame_shift_del	c.1918	p.F641fs	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF236	HGNC	ENSG00000130856				59	0	0	51	5	8.92857
SOGA2	0	genome.wustl.edu	37	18	8793004	8793004	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	18	8793004	8793004	C	-	DEL	SOGA2	ENST00000359865	human	ensembl	74_37	+1	known	frame_shift_del	c.1896	p.V635fs	0.015	NULL	pfam_SOGA	-	no_errors	SOGA2	HGNC	ENSG00000168502				119	0	0	105	9	7.89474
ANKRD12	0	genome.wustl.edu	37	18	9256207	9256207	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	18	9256207	9256207	A	-	DEL	ANKRD12	ENST00000262126	human	ensembl	74_37	+1	known	frame_shift_del	c.2942	p.K983fs	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD12	HGNC	ENSG00000101745				75	0	0	79	18	18.5567
PDE4C	0	genome.wustl.edu	37	19	18329753	18329753	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	18329753	18329753	A	-	DEL	PDE4C	ENST00000355502	human	ensembl	74_37	-1	known	frame_shift_del	c.1062	p.Q355fs	0.998	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE4C	HGNC	ENSG00000105650				69	0	0	71	9	11.25
SUGP2	0	genome.wustl.edu	37	19	19136394	19136394	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	19136394	19136394	T	-	DEL	SUGP2	ENST00000337018	human	ensembl	74_37	-1	known	frame_shift_del	c.763	p.I255fs	0.000	NULL	pfam_Surp,pfam_G_patch_dom,superfamily_Surp,smart_Surp,smart_G_patch_dom,pfscan_Surp,pfscan_G_patch_dom	-	no_errors	SUGP2	HGNC	ENSG00000064607				138	0	0	142	24	14.4578
ZNF626	0	genome.wustl.edu	37	19	20808338	20808338	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	20808338	20808338	T	-	DEL	ZNF626	ENST00000601440	human	ensembl	74_37	-1	known	frame_shift_del	c.345	p.G116fs	0.003	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF626	HGNC	ENSG00000188171				111	0	0	127	14	9.92908
ZNF540	0	genome.wustl.edu	37	19	38103018	38103018	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	38103018	38103018	T	-	DEL	ZNF540	ENST00000316433	human	ensembl	74_37	+1	known	frame_shift_del	c.837	p.F281fs	0.001	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF540	HGNC	ENSG00000171817				43	0	0	51	11	17.7419
RYR1	0	genome.wustl.edu	37	19	38939332	38939333	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	38939332	38939333	-	C	INS	RYR1	ENST00000359596	human	ensembl	74_37	+1	known	frame_shift_ins	c.1001_1002	p.E337fs	0.998:0.331	pfam_MIR_motif,superfamily_MIR_motif,smart_MIR_motif	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218				73	0	0	54	7	11.4754
MAP3K10	0	genome.wustl.edu	37	19	40715080	40715080	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	40715080	40715080	C	-	DEL	MAP3K10	ENST00000253055	human	ensembl	74_37	+1	known	frame_shift_del	c.1506	p.P504fs	1.000	pirsf_MAPKKK9/10/11	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_dom	-	no_errors	MAP3K10	HGNC	ENSG00000130758				89	0	0	56	3	5.08475
C19orf47	0	genome.wustl.edu	37	19	40834399	40834399	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	40834399	40834399	G	-	DEL	C19orf47	ENST00000582783	human	ensembl	74_37	-1	known	frame_shift_del	c.471	p.R158fs	0.107	NULL	superfamily_SAM/pointed	-	no_errors	C19orf47	HGNC	ENSG00000160392				156	0	0	143	16	10.0629
CIC	0	genome.wustl.edu	37	19	42796882	42796883	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	42796882	42796883	-	C	INS	CIC	ENST00000575354	human	ensembl	74_37	+1	known	frame_shift_ins	c.3340_3341	p.S1117fs	1.000:0.993	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	CIC	HGNC	ENSG00000079432				46	0	0	26	5	16.129
IRGQ	0	genome.wustl.edu	37	19	44096194	44096194	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	44096194	44096194	G	-	DEL	IRGQ	ENST00000422989	human	ensembl	74_37	-1	known	frame_shift_del	c.1856	p.P619fs	0.001	NULL	superfamily_P-loop_NTPase	-	no_errors	IRGQ	HGNC	ENSG00000167378				118	0	0	80	13	13.9785
CLASRP	0	genome.wustl.edu	37	19	45556128	45556129	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	45556128	45556129	-	C	INS	CLASRP	ENST00000221455	human	ensembl	74_37	+1	known	frame_shift_ins	c.277_278	p.L96fs	1.000:0.989	pfam_SWAP_N_domain	pfam_SWAP_N_domain	-	no_errors	CLASRP	HGNC	ENSG00000104859				82	0	0	74	5	6.32911
CD3EAP	0	genome.wustl.edu	37	19	45911872	45911872	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	45911872	45911872	A	-	DEL	CD3EAP	ENST00000589804	human	ensembl	74_37	+1	known	frame_shift_del	c.652	p.N220fs	0.178	pfam_DNA-dir_RNA_pol1_su_RPA34	pfam_DNA-dir_RNA_pol1_su_RPA34	-	no_errors	CD3EAP	HGNC	ENSG00000117877				132	0	0	135	15	10
ZC3H4	0	genome.wustl.edu	37	19	47570462	47570462	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	47570462	47570462	G	-	DEL	ZC3H4	ENST00000253048	human	ensembl	74_37	-1	known	frame_shift_del	c.3063	p.N1022fs	0.812	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H4	HGNC	ENSG00000130749				26	0	0	9	4	30.7692
SIGLEC10	0	genome.wustl.edu	37	19	51918605	51918605	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	51918605	51918605	G	-	DEL	SIGLEC10	ENST00000339313	human	ensembl	74_37	-1	known	frame_shift_del	c.1160	p.P387fs	0.122	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	SIGLEC10	HGNC	ENSG00000142512				57	0	0	41	6	12.766
LENG1	0	genome.wustl.edu	37	19	54660580	54660581	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	54660580	54660581	-	C	INS	LENG1	ENST00000222224	human	ensembl	74_37	-1	known	frame_shift_ins	c.496_495	p.K165fs	0.944:0.105	NULL	NULL	-	no_errors	LENG1	HGNC	ENSG00000105617				104	0	0	101	6	5.60748
ZNF776	0	genome.wustl.edu	37	19	58264856	58264857	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	19	58264856	58264857	-	A	INS	ZNF776	ENST00000317178	human	ensembl	74_37	+1	known	frame_shift_ins	c.358_359	p.L123fs	0.057:0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF776	HGNC	ENSG00000152443				96	0	0	106	11	9.40171
MRPS9	0	genome.wustl.edu	37	2	105706434	105706434	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	105706434	105706434	A	-	DEL	MRPS9	ENST00000258455	human	ensembl	74_37	+1	known	frame_shift_del	c.632	p.K212fs	1.000	NULL	pfam_Ribosomal_S9,superfamily_Ribosomal_S5_D2-typ_fold	-	no_errors	MRPS9	HGNC	ENSG00000135972				54	0	0	64	5	7.24638
SEPT10	0	genome.wustl.edu	37	2	110301828	110301828	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	110301828	110301828	T	-	DEL	SEPT10	ENST00000356688	human	ensembl	74_37	-1	putative	frame_shift_del	c.1506	p.K502fs	0.004	NULL	pfam_Cell_div_GTP-bd,superfamily_P-loop_NTPase	-	no_errors	SEPT10	HGNC	ENSG00000186522				34	0	0	46	13	22.0339
MKI67IP	0	genome.wustl.edu	37	2	122494356	122494356	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	122494356	122494356	T	-	DEL	MKI67IP	ENST00000285814	human	ensembl	74_37	-1	known	frame_shift_del	c.71	p.K24fs	0.083	NULL	pfam_hNIFK_FHA_Ki67_binding,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	MKI67IP	HGNC	ENSG00000155438				73	0	0	42	11	20.7547
RIF1	0	genome.wustl.edu	37	2	152319553	152319553	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	152319553	152319553	A	-	DEL	RIF1	ENST00000243326	human	ensembl	74_37	+1	known	frame_shift_del	c.3519	p.A1176fs	0.019	NULL	pfam_Rif1_N,superfamily_ARM-type_fold	-	no_errors	RIF1	HGNC	ENSG00000080345				52	0	0	81	9	10
LRP2	0	genome.wustl.edu	37	2	170127462	170127462	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	170127462	170127462	A	-	DEL	LRP2	ENST00000263816	human	ensembl	74_37	-1	known	frame_shift_del	c.2272	p.S758fs	1.000	smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479				93	0	0	135	14	9.39597
PPIG	0	genome.wustl.edu	37	2	170493971	170493972	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	170493971	170493972	-	A	INS	PPIG	ENST00000260970	human	ensembl	74_37	+1	known	frame_shift_ins	c.2203_2204	p.N737fs	0.378:0.369	NULL	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPIG	HGNC	ENSG00000138398				58	0	0	75	9	10.7143
SMC6	0	genome.wustl.edu	37	2	17898126	17898126	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	17898126	17898126	T	-	DEL	SMC6	ENST00000381272	human	ensembl	74_37	-1	known	frame_shift_del	c.1306	p.I436fs	1.000	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	SMC6	HGNC	ENSG00000163029				32	0	0	51	6	10.5263
ITGA4	0	genome.wustl.edu	37	2	182344950	182344950	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	182344950	182344950	T	-	DEL	ITGA4	ENST00000397033	human	ensembl	74_37	+1	known	frame_shift_del	c.711	p.L239fs	0.294	NULL	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA4	HGNC	ENSG00000115232				38	0	0	48	8	14.2857
DNAH7	0	genome.wustl.edu	37	2	196788373	196788374	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	196788373	196788374	-	T	INS	DNAH7	ENST00000312428	human	ensembl	74_37	-1	known	frame_shift_ins	c.3771_3770	p.N1257fs	0.000:0.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_hand_dom	-	no_errors	DNAH7	HGNC	ENSG00000118997				73	0	0	98	11	10.0917
CASP8	0	genome.wustl.edu	37	2	202139625	202139626	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	202139625	202139626	-	G	INS	CASP8	ENST00000358485	human	ensembl	74_37	+1	known	frame_shift_ins	c.786_787	p.V263fs	0.000:0.000	superfamily_DEATH-like_dom	pfam_DED,pfam_Pept_C14_caspase,superfamily_DEATH-like_dom,smart_DED,smart_Pept_C14A_p45_core,pfscan_DED,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14A_p45_core	-	no_errors	CASP8	HGNC	ENSG00000064012				49	0	0	49	5	9.25926
CYP20A1	0	genome.wustl.edu	37	2	204150380	204150380	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	204150380	204150380	A	-	DEL	CYP20A1	ENST00000356079	human	ensembl	74_37	+1	known	frame_shift_del	c.896	p.K301fs	0.997	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP20A1	HGNC	ENSG00000119004				95	0	0	92	15	14.0187
ERBB4	0	genome.wustl.edu	37	2	213403254	213403254	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	213403254	213403254	T	-	DEL	ERBB4	ENST00000342788	human	ensembl	74_37	-1	known	frame_shift_del	c.1	p.M1fs	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB4	HGNC	ENSG00000178568				66	0	0	39	6	13.3333
IRS1	0	genome.wustl.edu	37	2	227661341	227661341	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	227661341	227661341	C	-	DEL	IRS1	ENST00000305123	human	ensembl	74_37	-1	known	frame_shift_del	c.2114	p.G705fs	0.943	NULL	pfam_Insln_rcpt_S1,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,prints_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1	-	no_errors	IRS1	HGNC	ENSG00000169047				122	0	0	102	7	6.42202
TRIP12	0	genome.wustl.edu	37	2	230724115	230724116	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	230724115	230724116	-	T	INS	TRIP12	ENST00000283943	human	ensembl	74_37	-1	known	frame_shift_ins	c.274_273	p.P91fs	1.000:1.000	NULL	pfam_HECT,superfamily_HECT,superfamily_ARM-type_fold,smart_HECT,pfscan_HECT,pfscan_WWE-dom	-	no_errors	TRIP12	HGNC	ENSG00000153827				156	0	0	181	25	12.1359
KCNJ13	0	genome.wustl.edu	37	2	233633479	233633479	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	233633479	233633479	A	-	DEL	KCNJ13	ENST00000233826	human	ensembl	74_37	-1	known	frame_shift_del	c.505	p.S169fs	1.000	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_KCNJ13,prints_K_chnl_inward-rec_Kir	-	no_errors	KCNJ13	HGNC	ENSG00000115474				65	0	0	64	6	8.57143
HDLBP	0	genome.wustl.edu	37	2	242179467	242179467	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	242179467	242179467	C	-	DEL	HDLBP	ENST00000310931	human	ensembl	74_37	-1	known	frame_shift_del	c.2240	p.G747fs	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	HDLBP	HGNC	ENSG00000115677				125	0	0	103	12	10.4348
SULT6B1	0	genome.wustl.edu	37	2	37414553	37414553	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	37414553	37414553	T	-	DEL	SULT6B1	ENST00000535679	human	ensembl	74_37	-1	known	frame_shift_del	c.257	p.K86fs	0.944	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	SULT6B1	HGNC	ENSG00000138068				45	0	0	52	6	10.3448
ZNF638	0	genome.wustl.edu	37	2	71650549	71650549	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	71650549	71650549	A	-	DEL	ZNF638	ENST00000264447	human	ensembl	74_37	+1	known	frame_shift_del	c.3905	p.G1305fs	0.992	NULL	pfam_RRM_dom,smart_Znf_U1,smart_Znf_C2H2-like,smart_RRM_dom,pfscan_Znf_C2H2_matrin,pfscan_RRM_dom	-	no_errors	ZNF638	HGNC	ENSG00000075292				105	0	0	81	15	15.625
LOXL3	0	genome.wustl.edu	37	2	74763924	74763924	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	74763924	74763924	C	-	DEL	LOXL3	ENST00000264094	human	ensembl	74_37	-1	known	frame_shift_del	c.824	p.G275fs	0.001	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_Lysyl_oxidase,pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_Lysyl_oxidase,prints_SRCR	-	no_errors	LOXL3	HGNC	ENSG00000115318				65	0	0	59	5	7.8125
GGCX	0	genome.wustl.edu	37	2	85780609	85780611	+	In_Frame_Del	DEL	AGG	AGG	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	85780609	85780611	AGG	-	DEL	GGCX	ENST00000233838	human	ensembl	74_37	-1	known	in_frame_del	c.901_899	p.S300in_frame_del	1.000:1.000:1.000	pfam_VKG_COase,smart_HTTM	pfam_VKG_COase,superfamily_RmlC_Cupin,smart_HTTM	-	no_errors	GGCX	HGNC	ENSG00000115486				74	0	0	104	11	9.56522
ZNF2	0	genome.wustl.edu	37	2	95846814	95846815	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	95846814	95846815	-	A	INS	ZNF2	ENST00000453539	human	ensembl	74_37	+1	novel	frame_shift_ins	c.280_281	p.N96fs	0.000:0.005	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF2	HGNC	ENSG00000163067				74	0	0	97	9	8.49057
ANKRD23	0	genome.wustl.edu	37	2	97507820	97507821	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	97507820	97507821	-	G	INS	ANKRD23	ENST00000318357	human	ensembl	74_37	-1	known	frame_shift_ins	c.277_276	p.R92fs	0.876:0.906	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD23	HGNC	ENSG00000163126				116	0	0	91	10	9.90099
TMEM131	0	genome.wustl.edu	37	2	98475775	98475776	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	98475775	98475776	-	A	INS	TMEM131	ENST00000186436	human	ensembl	74_37	-1	known	frame_shift_ins	c.475_474	p.Q158fs	1.000:1.000	NULL	pfam_DUF3651_TMEM131	-	no_errors	TMEM131	HGNC	ENSG00000075568				88	0	0	113	15	11.7188
LIPT1	0	genome.wustl.edu	37	2	99778781	99778781	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	2	99778781	99778781	A	-	DEL	LIPT1	ENST00000340066	human	ensembl	74_37	+1	known	frame_shift_del	c.361	p.K123fs	0.994	pfam_BPL_LipA_LipB,tigrfam_LipoylTrfase_LipoateP_Ligase	pfam_BPL_LipA_LipB,tigrfam_LipoylTrfase_LipoateP_Ligase	-	no_errors	LIPT1	HGNC	ENSG00000144182				79	0	0	70	8	10.2564
CD93	0	genome.wustl.edu	37	20	23065887	23065887	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	20	23065887	23065887	C	-	DEL	CD93	ENST00000246006	human	ensembl	74_37	-1	known	frame_shift_del	c.943	p.A315fs	0.011	pirsf_CD93/CD141,pfam_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pirsf_CD93/CD141,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_MFS_dom_general_subst_transpt,smart_C-type_lectin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_C-type_lectin	-	no_errors	CD93	HGNC	ENSG00000125810				48	0	0	39	7	15.2174
RALGAPB	0	genome.wustl.edu	37	20	37182676	37182676	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	20	37182676	37182676	T	-	DEL	RALGAPB	ENST00000262879	human	ensembl	74_37	+1	known	frame_shift_del	c.3329	p.L1112fs	1.000	NULL	superfamily_ARM-type_fold,pfscan_Rap_GAP_dom	-	no_errors	RALGAPB	HGNC	ENSG00000170471				113	0	0	79	11	12.2222
DDX27	0	genome.wustl.edu	37	20	47858504	47858504	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	20	47858504	47858504	A	-	DEL	DDX27	ENST00000371764	human	ensembl	74_37	+1	known	frame_shift_del	c.2065	p.K691fs	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX27	HGNC	ENSG00000124228				117	0	0	107	15	12.2951
RAE1	0	genome.wustl.edu	37	20	55953093	55953093	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	20	55953093	55953093	A	-	DEL	RAE1	ENST00000371242	human	ensembl	74_37	+1	known	frame_shift_del	c.1045	p.N351fs	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	RAE1	HGNC	ENSG00000101146				46	0	0	45	7	13.4615
NRIP1	0	genome.wustl.edu	37	21	16338330	16338330	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	21	16338330	16338330	T	-	DEL	NRIP1	ENST00000318948	human	ensembl	74_37	-1	known	frame_shift_del	c.2184	p.E729fs	0.998	NULL	NULL	-	no_errors	NRIP1	HGNC	ENSG00000180530				56	0	0	60	8	11.7647
NRIP1	0	genome.wustl.edu	37	21	16339438	16339438	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	21	16339438	16339438	T	-	DEL	NRIP1	ENST00000318948	human	ensembl	74_37	-1	known	frame_shift_del	c.1076	p.N359fs	0.001	NULL	NULL	-	no_errors	NRIP1	HGNC	ENSG00000180530				126	0	0	115	15	11.5385
TRMT2A	0	genome.wustl.edu	37	22	20100231	20100231	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	22	20100231	20100231	G	-	DEL	TRMT2A	ENST00000252136	human	ensembl	74_37	-1	known	frame_shift_del	c.1733	p.P578fs	0.863	pfam_U5_MeTrfase	pfam_U5_MeTrfase,pfam_PCMT,pfam_Small_mtfrase_dom,pfam_RNA_methylase_dom,pfam_RNA_MeTrfase_RsmD,pfam_Methyltransf_11,pfam_tRNA_(Gua-N-7)_MeTrfase,pfam_UbiE/COQ5_MeTrFase,pfscan_RRM_dom	-	no_errors	TRMT2A	HGNC	ENSG00000099899				57	0	0	40	7	14.8936
BMS1P20	0	genome.wustl.edu	37	22	22661174	22661174	+	RNA	DEL	C	C	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	22	22661174	22661174	C	-	DEL	BMS1P20	ENST00000426066	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.876	-	-	-	no_errors	BMS1P20	HGNC	ENSG00000236850				33	0	0	26	11	29.7297
SEZ6L	0	genome.wustl.edu	37	22	26776238	26776239	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	22	26776238	26776239	AG	-	DEL	SEZ6L	ENST00000248933	human	ensembl	74_37	+1	known	frame_shift_del	c.3052_3053	p.E1019fs	1.000:1.000	NULL	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	SEZ6L	HGNC	ENSG00000100095				224	0	0	220	27	10.9312
TMPRSS6	0	genome.wustl.edu	37	22	37499436	37499436	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	22	37499436	37499436	G	-	DEL	TMPRSS6	ENST00000381792	human	ensembl	74_37	-1	known	frame_shift_del	c.22	p.Q8fs	0.661	pirsf_Pept_S1A_matriptase-2	pirsf_Pept_S1A_matriptase-2,pfam_Peptidase_S1,pfam_LDrepeatLR_classA_rpt,pfam_SEA_dom,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1,prints_Peptidase_S1A,prints_LDrepeatLR_classA_rpt,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1	-	no_errors	TMPRSS6	HGNC	ENSG00000187045				108	0	0	59	7	10.6061
CACNA1I	0	genome.wustl.edu	37	22	40036980	40036980	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	22	40036980	40036980	C	-	DEL	CACNA1I	ENST00000336649	human	ensembl	74_37	+1	known	frame_shift_del	c.849	p.P285fs	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1I	HGNC	ENSG00000100346				39	0	0	39	6	13.3333
TBC1D23	0	genome.wustl.edu	37	3	100039736	100039736	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	100039736	100039736	A	-	DEL	TBC1D23	ENST00000394144	human	ensembl	74_37	+1	known	frame_shift_del	c.1939	p.K649fs	1.000	NULL	pfam_Rab-GTPase-TBC_dom,pfam_Rhodanese-like_dom,superfamily_Rab-GTPase-TBC_dom,superfamily_Rhodanese-like_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom,pfscan_Rhodanese-like_dom	-	no_errors	TBC1D23	HGNC	ENSG00000036054				67	0	0	67	15	18.2927
TATDN2	0	genome.wustl.edu	37	3	10312539	10312539	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	10312539	10312539	G	-	DEL	TATDN2	ENST00000287652	human	ensembl	74_37	+1	known	frame_shift_del	c.1673	p.A560fs	1.000	pfam_TatD_family	pfam_TatD_family	-	no_errors	TATDN2	HGNC	ENSG00000157014				163	0	0	144	18	11.1111
MORC1	0	genome.wustl.edu	37	3	108682419	108682419	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	108682419	108682419	T	-	DEL	MORC1	ENST00000232603	human	ensembl	74_37	-1	known	frame_shift_del	c.2641	p.I881fs	0.062	NULL	pfam_Znf_CW,superfamily_HATPase_ATP-bd,pfscan_Znf_CW	-	no_errors	MORC1	HGNC	ENSG00000114487				49	0	0	56	9	13.8462
ZBTB20	0	genome.wustl.edu	37	3	114058003	114058003	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	114058003	114058003	G	-	DEL	ZBTB20	ENST00000474710	human	ensembl	74_37	-1	known	frame_shift_del	c.2075	p.P692fs	0.678	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB20	HGNC	ENSG00000181722				46	0	0	48	6	11.1111
TAMM41	0	genome.wustl.edu	37	3	11851058	11851059	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	11851058	11851059	-	T	INS	TAMM41	ENST00000273037	human	ensembl	74_37	-1	known	frame_shift_ins	c.807_806	p.N269fs	1.000:1.000	pfam_Mmp37,pirsf_Mmp37	pfam_Mmp37,pirsf_Mmp37	-	no_errors	TAMM41	HGNC	ENSG00000144559				53	0	0	90	11	10.8911
PARP14	0	genome.wustl.edu	37	3	122419268	122419270	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	122419268	122419270	AAG	-	DEL	PARP14	ENST00000474629	human	ensembl	74_37	+1	known	in_frame_del	c.1867_1869	p.K624in_frame_del	0.306:0.309:0.293	NULL	pfam_Macro_dom,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_WWE-dom,smart_Macro_dom,pfscan_Macro_dom,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP14	HGNC	ENSG00000173193				30	0	0	43	11	20.3704
MGLL	0	genome.wustl.edu	37	3	127454581	127454582	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	127454581	127454582	-	C	INS	MGLL	ENST00000398101	human	ensembl	74_37	-1	putative	frame_shift_ins	c.121_120	p.S40fs	0.000:0.000	NULL	pfam_AB_hydrolase_1,pfam_Lipase_3,pfam_Esterase_put,pfam_AB_hydrolase_3	-	no_errors	MGLL	HGNC	ENSG00000074416				160	0	0	128	10	7.24638
U2SURP	0	genome.wustl.edu	37	3	142769829	142769829	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	142769829	142769829	A	-	DEL	U2SURP	ENST00000473835	human	ensembl	74_37	+1	known	frame_shift_del	c.2593	p.K866fs	1.000	NULL	pfam_Surp,pfam_RRM_dom,superfamily_Surp,superfamily_ENTH_VHS,smart_RRM_dom,smart_Surp,smart_CID_dom,pfscan_Surp,pfscan_RRM_dom	-	no_errors	U2SURP	HGNC	ENSG00000163714				49	0	0	42	8	16
DHX36	0	genome.wustl.edu	37	3	154010357	154010358	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	154010357	154010358	TC	-	DEL	DHX36	ENST00000496811	human	ensembl	74_37	-1	known	frame_shift_del	c.1797_1796	p.R599fs	1.000:1.000	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX36	HGNC	ENSG00000174953				199	0	0	199	23	10.3604
LRRC31	0	genome.wustl.edu	37	3	169557805	169557805	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	169557805	169557805	T	-	DEL	LRRC31	ENST00000316428	human	ensembl	74_37	-1	known	frame_shift_del	c.1624	p.R542fs	0.007	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC31	HGNC	ENSG00000114248				79	0	0	62	12	16.2162
FETUB	0	genome.wustl.edu	37	3	186362544	186362544	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	186362544	186362544	A	-	DEL	FETUB	ENST00000265029	human	ensembl	74_37	+1	known	frame_shift_del	c.429	p.K146fs	0.854	NULL	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	FETUB	HGNC	ENSG00000090512				102	0	0	98	20	16.9492
KCNH8	0	genome.wustl.edu	37	3	19492702	19492704	+	In_Frame_Del	DEL	AGG	AGG	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	19492702	19492704	AGG	-	DEL	KCNH8	ENST00000328405	human	ensembl	74_37	+1	known	in_frame_del	c.1631_1633	p.E545in_frame_del	1.000:1.000:1.000	superfamily_cNMP-bd-like	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold_3,pfam_PAS_4,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,superfamily_tRNA-bd_arm,smart_PAC,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,pfscan_PAS-assoc_C,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,prints_K_chnl_volt-dep_EAG,tigrfam_PAS	-	no_errors	KCNH8	HGNC	ENSG00000183960				141	0	0	134	12	8.21918
EOMES	0	genome.wustl.edu	37	3	27761703	27761703	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	27761703	27761703	C	-	DEL	EOMES	ENST00000449599	human	ensembl	74_37	-1	known	frame_shift_del	c.995	p.G332fs	1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	EOMES	HGNC	ENSG00000163508				134	0	0	101	9	8.18182
TTC21A	0	genome.wustl.edu	37	3	39177852	39177852	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	39177852	39177852	T	-	DEL	TTC21A	ENST00000301819	human	ensembl	74_37	+1	known	frame_shift_del	c.2973	p.L993fs	0.999	pfscan_TPR-contain_dom	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC21A	HGNC	ENSG00000168026				92	0	0	96	13	11.9266
LARS2	0	genome.wustl.edu	37	3	45435972	45435972	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	45435972	45435972	T	-	DEL	LARS2	ENST00000265537	human	ensembl	74_37	+1	known	frame_shift_del	c.27	p.Y11fs	0.000	NULL	pfam_aa-tRNA-synth_Ia,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_V/L/I-tRNA-synth_anticodon-bd,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Val/Leu/Ile-tRNA-synth_edit,prints_Leu-tRNA-ligase_bac/mito,tigrfam_Leu-tRNA-ligase_bac/mito	-	no_errors	LARS2	HGNC	ENSG00000011376				60	0	0	57	8	12.3077
DOCK3	0	genome.wustl.edu	37	3	51417604	51417604	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	51417604	51417604	C	-	DEL	DOCK3	ENST00000266037	human	ensembl	74_37	+1	known	frame_shift_del	c.5549	p.P1852fs	0.115	NULL	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538				39	0	0	36	7	16.2791
ROBO2	0	genome.wustl.edu	37	3	77657038	77657038	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	77657038	77657038	C	-	DEL	ROBO2	ENST00000461745	human	ensembl	74_37	+1	known	frame_shift_del	c.3226	p.P1078fs	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO2	HGNC	ENSG00000185008				46	0	0	59	4	6.34921
ROBO2	0	genome.wustl.edu	37	3	77684125	77684125	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	3	77684125	77684125	A	-	DEL	ROBO2	ENST00000461745	human	ensembl	74_37	+1	known	frame_shift_del	c.3865	p.K1290fs	0.976	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO2	HGNC	ENSG00000185008				90	0	0	73	6	7.59494
ARSJ	0	genome.wustl.edu	37	4	114823494	114823494	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	114823494	114823494	T	-	DEL	ARSJ	ENST00000315366	human	ensembl	74_37	-1	known	frame_shift_del	c.1736	p.K579fs	0.628	NULL	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSJ	HGNC	ENSG00000180801				52	0	0	38	6	13.6364
TRAM1L1	0	genome.wustl.edu	37	4	118005516	118005517	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	118005516	118005517	-	T	INS	TRAM1L1	ENST00000310754	human	ensembl	74_37	-1	known	frame_shift_ins	c.1034_1033	p.R345fs	1.000:1.000	pirsf_Translocation_assoc_membrane	pfam_TRAM1,pfam_TLC-dom,smart_TLC-dom,pirsf_Translocation_assoc_membrane,pfscan_TLC-dom	-	no_errors	TRAM1L1	HGNC	ENSG00000174599				187	0	0	166	18	9.78261
MAD2L1	0	genome.wustl.edu	37	4	120981393	120981393	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	120981393	120981393	T	-	DEL	MAD2L1	ENST00000296509	human	ensembl	74_37	-1	known	frame_shift_del	c.498	p.K166fs	0.996	pfam_HORMA_DNA-bd,superfamily_HORMA_DNA-bd,pfscan_HORMA_DNA-bd	pfam_HORMA_DNA-bd,superfamily_HORMA_DNA-bd,pfscan_HORMA_DNA-bd	-	no_errors	MAD2L1	HGNC	ENSG00000164109				41	0	0	41	10	19.6078
INTU	0	genome.wustl.edu	37	4	128564917	128564917	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	128564917	128564917	A	-	DEL	INTU	ENST00000335251	human	ensembl	74_37	+1	known	frame_shift_del	c.388	p.N132fs	1.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	INTU	HGNC	ENSG00000164066				91	0	0	148	12	7.5
TIGD4	0	genome.wustl.edu	37	4	153691624	153691624	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	153691624	153691624	T	-	DEL	TIGD4	ENST00000304337	human	ensembl	74_37	-1	known	frame_shift_del	c.533	p.N178fs	1.000	pfam_DDE_SF_endonuclease_CENPB-like	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,pfam_HTH_Psq,pfam_Centromere_CenpB_dimerisation,superfamily_Homeodomain-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_HTH_Psq	-	no_errors	TIGD4	HGNC	ENSG00000169989				44	0	0	55	7	11.2903
TMA16	0	genome.wustl.edu	37	4	164428219	164428219	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	164428219	164428219	A	-	DEL	TMA16	ENST00000358572	human	ensembl	74_37	+1	known	frame_shift_del	c.38	p.V16fs	1.000	pfam_Tma16	pfam_Tma16	-	no_errors	TMA16	HGNC	ENSG00000198498				27	0	0	36	7	16.2791
TLR3	0	genome.wustl.edu	37	4	186997804	186997805	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	186997804	186997805	-	G	INS	TLR3	ENST00000296795	human	ensembl	74_37	+1	known	frame_shift_ins	c.31_32	p.L14fs	0.000:0.000	NULL	pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR3	HGNC	ENSG00000164342				83	0	0	91	11	10.7843
SLC30A9	0	genome.wustl.edu	37	4	42037307	42037307	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	42037307	42037307	A	-	DEL	SLC30A9	ENST00000264451	human	ensembl	74_37	+1	known	frame_shift_del	c.626	p.I211fs	1.000	NULL	pfam_Cation_efflux,superfamily_DNA-bd_dom_put,tigrfam_Cation_efflux	-	no_errors	SLC30A9	HGNC	ENSG00000014824				73	0	0	60	6	9.09091
SRD5A3	0	genome.wustl.edu	37	4	56225516	56225516	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	56225516	56225516	T	-	DEL	SRD5A3	ENST00000264228	human	ensembl	74_37	+1	known	frame_shift_del	c.225	p.S77fs	0.986	NULL	pfam_3-oxo-5_a-steroid_4-DH_C,pfscan_3-oxo-5_a-steroid_4-DH_C	-	no_errors	SRD5A3	HGNC	ENSG00000128039				252	0	0	311	32	9.32945
SRP72	0	genome.wustl.edu	37	4	57340350	57340350	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	57340350	57340350	A	-	DEL	SRP72	ENST00000342756	human	ensembl	74_37	+1	known	frame_shift_del	c.485	p.V164fs	1.000	NULL	pfam_Signal_recog_part_SRP72_RNA-bd,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	SRP72	HGNC	ENSG00000174780				83	0	0	91	15	14.1509
C4orf26	0	genome.wustl.edu	37	4	76489680	76489680	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	4	76489680	76489680	A	-	DEL	C4orf26	ENST00000435974	human	ensembl	74_37	+1	putative	frame_shift_del	c.468	p.S159fs	0.001	NULL	NULL	-	no_errors	C4orf26	HGNC	ENSG00000174792				107	0	0	126	11	8.0292
EPB41L4A	0	genome.wustl.edu	37	5	111519753	111519754	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	111519753	111519754	-	T	INS	EPB41L4A	ENST00000261486	human	ensembl	74_37	-1	known	frame_shift_ins	c.1582_1581	p.A527fs	0.796:0.800	NULL	pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L4A	HGNC	ENSG00000129595				102	0	0	117	8	6.4
ZNF608	0	genome.wustl.edu	37	5	123984684	123984684	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	123984684	123984684	C	-	DEL	ZNF608	ENST00000306315	human	ensembl	74_37	-1	known	frame_shift_del	c.1393	p.A465fs	0.918	NULL	NULL	-	no_errors	ZNF608	HGNC	ENSG00000168916				102	0	0	75	7	8.53659
RAPGEF6	0	genome.wustl.edu	37	5	130840416	130840416	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	130840416	130840416	T	-	DEL	RAPGEF6	ENST00000509018	human	ensembl	74_37	-1	known	frame_shift_del	c.1157	p.N386fs	1.000	superfamily_Ras_GEF_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom	pfam_RasGRF_CDC25,pfam_PDZ,pfam_Ras-assoc,pfam_cNMP-bd_dom,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,superfamily_PDZ,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ras-like_Gua-exchang_fac_N,smart_PDZ,smart_Ras-assoc,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_PDZ,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF6	HGNC	ENSG00000158987				70	0	0	76	7	8.43373
FNIP1	0	genome.wustl.edu	37	5	131007941	131007941	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	131007941	131007941	T	-	DEL	FNIP1	ENST00000510461	human	ensembl	74_37	-1	known	frame_shift_del	c.2196	p.K732fs	0.994	NULL	NULL	-	no_errors	FNIP1	HGNC	ENSG00000217128				153	0	0	197	23	10.4545
PCDHA6	0	genome.wustl.edu	37	5	140208575	140208576	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	140208575	140208576	-	A	INS	PCDHA6	ENST00000529310	human	ensembl	74_37	+1	known	frame_shift_ins	c.899_900	p.E301fs	1.000:0.972	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA6	HGNC	ENSG00000081842				151	0	0	169	14	7.65027
PCDHB2	0	genome.wustl.edu	37	5	140474590	140474590	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	140474590	140474590	A	-	DEL	PCDHB2	ENST00000194155	human	ensembl	74_37	+1	known	frame_shift_del	c.216	p.M75fs	0.087	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB2	HGNC	ENSG00000112852				75	0	0	80	11	12.0879
STK32A	0	genome.wustl.edu	37	5	146754725	146754725	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	146754725	146754725	A	-	DEL	STK32A	ENST00000397936	human	ensembl	74_37	+1	known	frame_shift_del	c.976	p.K328fs	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	STK32A	HGNC	ENSG00000169302				51	0	0	40	10	20
SPINK5	0	genome.wustl.edu	37	5	147478860	147478860	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	147478860	147478860	A	-	DEL	SPINK5	ENST00000359874	human	ensembl	74_37	+1	known	frame_shift_del	c.1074	p.A360fs	0.095	NULL	pfam_Kazal_dom,smart_Kazal_dom	-	no_errors	SPINK5	HGNC	ENSG00000133710				78	0	0	60	13	17.8082
SLC26A2	0	genome.wustl.edu	37	5	149357647	149357647	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	149357647	149357647	T	-	DEL	SLC26A2	ENST00000286298	human	ensembl	74_37	+1	known	frame_shift_del	c.432	p.F146fs	0.583	tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A2	HGNC	ENSG00000155850				111	0	0	98	12	10.9091
HMMR	0	genome.wustl.edu	37	5	162917425	162917426	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	162917425	162917426	-	A	INS	HMMR	ENST00000393915	human	ensembl	74_37	+1	known	frame_shift_ins	c.1992_1993	p.Q667fs	0.976:1.000	NULL	NULL	-	no_errors	HMMR	HGNC	ENSG00000072571				76	0	0	93	8	7.92079
WWC1	0	genome.wustl.edu	37	5	167895969	167895969	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	167895969	167895969	T	-	DEL	WWC1	ENST00000265293	human	ensembl	74_37	+1	known	frame_shift_del	c.3289	p.F1098fs	0.999	NULL	pfam_WW_dom,superfamily_C2_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	WWC1	HGNC	ENSG00000113645				87	0	0	83	6	6.74157
FLT4	0	genome.wustl.edu	37	5	180053022	180053023	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	180053022	180053023	-	G	INS	FLT4	ENST00000261937	human	ensembl	74_37	-1	known	frame_shift_ins	c.1268_1267	p.Q423fs	1.000:1.000	pfscan_Ig-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_VEGFR3_rcpt	-	no_errors	FLT4	HGNC	ENSG00000037280				47	0	0	33	5	13.1579
SREK1IP1	0	genome.wustl.edu	37	5	64023941	64023941	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	64023941	64023941	T	-	DEL	SREK1IP1	ENST00000513458	human	ensembl	74_37	-1	known	frame_shift_del	c.271	p.R91fs	1.000	NULL	superfamily_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	SREK1IP1	HGNC	ENSG00000153006				9	0	0	6	6	50
MSH3	0	genome.wustl.edu	37	5	79970915	79970915	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	79970915	79970915	A	-	DEL	MSH3	ENST00000265081	human	ensembl	74_37	+1	known	frame_shift_del	c.1141	p.K383fs	0.982	pfam_DNA_mmatch_repair_MutS_con_dom,superfamily_DNA_mmatch_repair_MutS_con_dom	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mmatch_repair_MutS_con_dom,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_P-loop_NTPase,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mmatch_repair_MutS_con_dom,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C	-	no_errors	MSH3	HGNC	ENSG00000113318				152	0	0	155	10	6.06061
RHOBTB3	0	genome.wustl.edu	37	5	95067839	95067839	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	5	95067839	95067839	T	-	DEL	RHOBTB3	ENST00000506817	human	ensembl	74_37	+1	putative	frame_shift_del	c.279	p.S96fs	0.013	NULL	NULL	-	no_errors	RHOBTB3	HGNC	ENSG00000164292				15	0	0	20	4	16.6667
SIM1	0	genome.wustl.edu	37	6	100838735	100838735	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	100838735	100838735	T	-	DEL	SIM1	ENST00000262901	human	ensembl	74_37	-1	known	frame_shift_del	c.1803	p.K601fs	1.000	pfam_SIM_C	pfam_SIM_C,pfam_PAS_fold_3,pfam_PAS_fold,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	SIM1	HGNC	ENSG00000112246				48	0	0	68	7	9.33333
GCM2	0	genome.wustl.edu	37	6	10876680	10876681	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	10876680	10876681	-	A	INS	GCM2	ENST00000379491	human	ensembl	74_37	-1	known	frame_shift_ins	c.454_453	p.Q151fs	1.000:1.000	pfam_Tscrpt_reg_GCM_motif,superfamily_Tscrpt_reg_GCM_motif,pfscan_Tscrpt_reg_GCM_motif	pfam_Tscrpt_reg_GCM_motif,superfamily_Tscrpt_reg_GCM_motif,pfscan_Tscrpt_reg_GCM_motif	-	no_errors	GCM2	HGNC	ENSG00000124827				60	0	0	55	24	30.3797
KIAA0408	0	genome.wustl.edu	37	6	127767595	127767596	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	127767595	127767596	-	C	INS	KIAA0408	ENST00000483725	human	ensembl	74_37	-1	novel	frame_shift_ins	c.1869_1868	p.Q624fs	0.708:0.230	NULL	NULL	-	no_errors	KIAA0408	HGNC	ENSG00000189367				287	0	0	305	20	6.15385
IFNGR1	0	genome.wustl.edu	37	6	137527318	137527319	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	137527318	137527319	-	T	INS	IFNGR1	ENST00000367739	human	ensembl	74_37	-1	known	frame_shift_ins	c.328_327	p.E109fs	1.000:0.998	superfamily_Fibronectin_type3,prints_Interferon_gamma_rcpt_asu	pfam_Interferon_gamma_pox/mammal,pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3,prints_Interferon_gamma_rcpt_asu	-	no_errors	IFNGR1	HGNC	ENSG00000027697				111	0	0	151	15	9.03614
TNFAIP3	0	genome.wustl.edu	37	6	138199674	138199675	+	Frame_Shift_Del	DEL	GA	GA	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	138199674	138199675	GA	-	DEL	TNFAIP3	ENST00000237289	human	ensembl	74_37	+1	known	frame_shift_del	c.1092_1093	p.E366fs	0.999:1.000	NULL	pfam_Znf_A20,pfam_OTU,smart_Znf_A20,pfscan_OTU,pfscan_Znf_A20	-	no_errors	TNFAIP3	HGNC	ENSG00000118503				59	0	0	53	15	22.0588
AGPAT4	0	genome.wustl.edu	37	6	161560589	161560589	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	161560589	161560589	G	-	DEL	AGPAT4	ENST00000320285	human	ensembl	74_37	-1	known	frame_shift_del	c.907	p.R303fs	0.011	NULL	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase	-	no_errors	AGPAT4	HGNC	ENSG00000026652				58	0	0	38	6	13.6364
KIF13A	0	genome.wustl.edu	37	6	17788023	17788023	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	17788023	17788023	T	-	DEL	KIF13A	ENST00000259711	human	ensembl	74_37	-1	known	frame_shift_del	c.3345	p.V1116fs	1.000	NULL	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_KIF1B,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF13A	HGNC	ENSG00000137177				112	0	0	116	20	14.7059
SLC17A1	0	genome.wustl.edu	37	6	25830752	25830753	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	25830752	25830753	-	T	INS	SLC17A1	ENST00000244527	human	ensembl	74_37	-1	known	frame_shift_ins	c.34_33	p.V11fs	0.996:0.994	superfamily_MFS_dom_general_subst_transpt,tigrfam_Pi_cotranspt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Pi_cotranspt	-	no_errors	SLC17A1	HGNC	ENSG00000124568				159	0	0	157	38	19.4872
PPP1R10	0	genome.wustl.edu	37	6	30572795	30572795	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	30572795	30572795	T	-	DEL	PPP1R10	ENST00000376511	human	ensembl	74_37	-1	known	frame_shift_del	c.930	p.V311fs	0.999	NULL	pfam_TFIIS_N,pfam_Znf_CCCH,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,smart_Znf_CCCH	-	no_errors	PPP1R10	HGNC	ENSG00000204569				66	0	0	62	9	12.6761
RPL10A	0	genome.wustl.edu	37	6	35438122	35438124	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	35438122	35438124	GAA	-	DEL	RPL10A	ENST00000322203	human	ensembl	74_37	+1	known	in_frame_del	c.477_479	p.K161in_frame_del	1.000:1.000:1.000	pfam_Ribosomal_L1/biogenesis,superfamily_Ribosomal_L1-like,pirsf_Ribosomal_L1	pfam_Ribosomal_L1/biogenesis,superfamily_Ribosomal_L1-like,pirsf_Ribosomal_L1	-	no_errors	RPL10A	HGNC	ENSG00000198755				54	0	0	50	5	9.09091
KIF6	0	genome.wustl.edu	37	6	39580993	39580993	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	39580993	39580993	A	-	DEL	KIF6	ENST00000287152	human	ensembl	74_37	-1	known	frame_shift_del	c.611	p.L204fs	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF6	HGNC	ENSG00000164627				62	0	0	79	13	14.1304
SMAP1	0	genome.wustl.edu	37	6	71508370	71508370	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	71508370	71508370	A	-	DEL	SMAP1	ENST00000370455	human	ensembl	74_37	+1	known	frame_shift_del	c.506	p.K172fs	1.000	NULL	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	SMAP1	HGNC	ENSG00000112305				18	0	0	14	6	30
DDX43	0	genome.wustl.edu	37	6	74117732	74117732	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	6	74117732	74117732	A	-	DEL	DDX43	ENST00000370336	human	ensembl	74_37	+1	known	frame_shift_del	c.1087	p.G365fs	0.057	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_KH_dom_type_1,superfamily_P-loop_NTPase,smart_KH_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_KH_dom_type_1,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX43	HGNC	ENSG00000080007				81	0	0	81	12	12.9032
CBLL1	0	genome.wustl.edu	37	7	107399402	107399402	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	107399402	107399402	C	-	DEL	CBLL1	ENST00000440859	human	ensembl	74_37	+1	known	frame_shift_del	c.1255	p.P420fs	1.000	NULL	pfscan_Znf_RING	-	no_errors	CBLL1	HGNC	ENSG00000105879				186	0	0	179	14	7.25389
CNOT4	0	genome.wustl.edu	37	7	135106951	135106951	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	135106951	135106951	T	-	DEL	CNOT4	ENST00000541284	human	ensembl	74_37	-1	known	frame_shift_del	c.326	p.N109fs	1.000	pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom_euk,pfscan_Znf_RING,pfscan_RRM_dom	-	no_errors	CNOT4	HGNC	ENSG00000080802				81	0	0	109	22	16.7939
NUP205	0	genome.wustl.edu	37	7	135291626	135291627	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	135291626	135291627	-	A	INS	NUP205	ENST00000285968	human	ensembl	74_37	+1	known	frame_shift_ins	c.3033_3034	p.P1013fs	0.445:0.996	pfam_Nup186/Nup192/Nup205	pfam_Nup186/Nup192/Nup205	-	no_errors	NUP205	HGNC	ENSG00000155561				170	0	0	149	16	9.69697
ZNF282	0	genome.wustl.edu	37	7	148895815	148895815	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	148895815	148895815	C	-	DEL	ZNF282	ENST00000262085	human	ensembl	74_37	+1	known	frame_shift_del	c.556	p.P187fs	1.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_DUF3669_Znf,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF282	HGNC	ENSG00000170265				77	0	0	66	4	5.71429
AHR	0	genome.wustl.edu	37	7	17379636	17379636	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	17379636	17379636	C	-	DEL	AHR	ENST00000242057	human	ensembl	74_37	+1	known	frame_shift_del	c.2187	p.T731fs	0.782	NULL	pfam_PAS_fold_3,pfam_PAS_fold,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	AHR	HGNC	ENSG00000106546				104	0	0	111	16	12.5984
RAPGEF5	0	genome.wustl.edu	37	7	22175700	22175700	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	22175700	22175700	T	-	DEL	RAPGEF5	ENST00000344041	human	ensembl	74_37	-1	known	frame_shift_del	c.1913	p.K638fs	1.000	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF5	HGNC	ENSG00000136237				73	0	0	97	9	8.49057
RAPGEF5	0	genome.wustl.edu	37	7	22197474	22197474	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	22197474	22197474	T	-	DEL	RAPGEF5	ENST00000344041	human	ensembl	74_37	-1	known	frame_shift_del	c.1097	p.K366fs	1.000	superfamily_Ras_GEF_dom	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF5	HGNC	ENSG00000136237				70	0	0	64	12	15.7895
GPNMB	0	genome.wustl.edu	37	7	23293063	23293063	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	23293063	23293063	A	-	DEL	GPNMB	ENST00000381990	human	ensembl	74_37	+1	known	frame_shift_del	c.208	p.N71fs	1.000	NULL	pfam_PKD_dom,superfamily_PKD_dom,smart_PKD/Chitinase_dom,pfscan_PKD_dom	-	no_errors	GPNMB	HGNC	ENSG00000136235				61	0	0	74	6	7.5
MPP6	0	genome.wustl.edu	37	7	24705666	24705666	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	24705666	24705666	A	-	DEL	MPP6	ENST00000222644	human	ensembl	74_37	+1	known	frame_shift_del	c.910	p.K306fs	1.000	superfamily_SH3_domain	pfam_GK/Ca_channel_bsu,pfam_L27_C,pfam_SH3_2,pfam_PDZ,pfam_SH3_domain,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	MPP6	HGNC	ENSG00000105926				143	0	0	169	27	13.7755
SUN3	0	genome.wustl.edu	37	7	48068494	48068494	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	48068494	48068494	A	-	DEL	SUN3	ENST00000297325	human	ensembl	74_37	-1	known	frame_shift_del	c.42	p.F14fs	0.000	NULL	pfam_Sad1_UNC_C,superfamily_Galactose-bd-like	-	no_errors	SUN3	HGNC	ENSG00000164744				99	0	0	110	7	5.98291
PMS2CL	0	genome.wustl.edu	37	7	6791127	6791127	+	RNA	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	6791127	6791127	A	-	DEL	PMS2CL	ENST00000486256	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.016	-	-	-	no_errors	PMS2CL	HGNC	ENSG00000187953				34	0	0	31	6	16.2162
SAMD9L	0	genome.wustl.edu	37	7	92760738	92760738	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	7	92760738	92760738	T	-	DEL	SAMD9L	ENST00000318238	human	ensembl	74_37	-1	known	frame_shift_del	c.4547	p.N1516fs	0.000	NULL	superfamily_SAM/pointed,superfamily_P-loop_NTPase,pfscan_SAM	-	no_errors	SAMD9L	HGNC	ENSG00000177409				80	0	0	109	14	11.3821
CSMD3	0	genome.wustl.edu	37	8	113237101	113237102	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	113237101	113237102	-	T	INS	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	frame_shift_ins	c.11023_11022	p.A3674fs	1.000:1.000	NULL	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				159	0	0	190	12	5.94059
CSMD3	0	genome.wustl.edu	37	8	113241029	113241029	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	113241029	113241029	A	-	DEL	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	frame_shift_del	c.10920	p.F3640fs	1.000	NULL	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				98	0	0	101	6	5.60748
ATAD2	0	genome.wustl.edu	37	8	124384893	124384893	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	124384893	124384893	T	-	DEL	ATAD2	ENST00000287394	human	ensembl	74_37	-1	known	frame_shift_del	c.354	p.E119fs	0.995	NULL	pfam_ATPase_AAA_core,pfam_Bromodomain,superfamily_P-loop_NTPase,superfamily_Bromodomain,smart_AAA+_ATPase,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	ATAD2	HGNC	ENSG00000156802				113	0	0	131	25	16.0256
PHF20L1	0	genome.wustl.edu	37	8	133823343	133823343	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	133823343	133823343	C	-	DEL	PHF20L1	ENST00000395386	human	ensembl	74_37	+1	putative	frame_shift_del	c.900	p.Y301fs	0.940	pfam_DUF3776	pfam_DUF3776,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Tudor,smart_Tudor-like_plant	-	no_errors	PHF20L1	HGNC	ENSG00000129292				109	0	0	171	12	6.55738
GLI4	0	genome.wustl.edu	37	8	144351578	144351579	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	144351578	144351579	-	G	INS	GLI4	ENST00000340042	human	ensembl	74_37	+1	known	frame_shift_ins	c.12_13	p.D5fs	0.004:0.018	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI4	HGNC	ENSG00000250571				224	0	0	196	11	5.31401
ZNF34	0	genome.wustl.edu	37	8	145999670	145999670	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	145999670	145999670	T	-	DEL	ZNF34	ENST00000343459	human	ensembl	74_37	-1	known	frame_shift_del	c.664	p.T222fs	0.001	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF34	HGNC	ENSG00000196378				32	0	0	32	6	15.7895
LOXL2	0	genome.wustl.edu	37	8	23155604	23155605	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	23155604	23155605	-	T	INS	LOXL2	ENST00000389131	human	ensembl	74_37	-1	known	frame_shift_ins	c.2277_2276	p.F760fs	0.998:0.994	NULL	pfam_Lysyl_oxidase,pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_Lysyl_oxidase,prints_SRCR	-	no_errors	LOXL2	HGNC	ENSG00000134013				41	0	0	32	6	15.7895
WRN	0	genome.wustl.edu	37	8	31001132	31001132	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	31001132	31001132	A	-	DEL	WRN	ENST00000298139	human	ensembl	74_37	+1	known	frame_shift_del	c.3376	p.S1128fs	0.872	NULL	pfam_3'-5'_exonuclease_dom,pfam_Helicase_C,pfam_RQC_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_HRDC_dom,superfamily_P-loop_NTPase,superfamily_RNaseH-like_dom,superfamily_HRDC-like,smart_3'-5'_exonuclease_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_RQC_domain,smart_HRDC_dom,pfscan_HRDC_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	WRN	HGNC	ENSG00000165392				58	0	0	91	12	11.6505
PRKDC	0	genome.wustl.edu	37	8	48701555	48701555	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	48701555	48701555	T	-	DEL	PRKDC	ENST00000314191	human	ensembl	74_37	-1	known	frame_shift_del	c.10811	p.N3604fs	0.000	NULL	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729				54	0	0	67	7	9.45946
PRKDC	0	genome.wustl.edu	37	8	48740816	48740817	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	48740816	48740817	-	T	INS	PRKDC	ENST00000314191	human	ensembl	74_37	-1	known	frame_shift_ins	c.8487_8486	p.N2829fs	0.000:0.000	NULL	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729				61	0	0	75	9	10.7143
ZFHX4	0	genome.wustl.edu	37	8	77617546	77617547	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	8	77617546	77617547	-	G	INS	ZFHX4	ENST00000521891	human	ensembl	74_37	+1	known	frame_shift_ins	c.1223_1224	p.L411fs	1.000:1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656				51	0	0	51	12	19.0476
INVS	0	genome.wustl.edu	37	9	103054644	103054644	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	9	103054644	103054644	G	-	DEL	INVS	ENST00000262457	human	ensembl	74_37	+1	known	frame_shift_del	c.2105	p.C702fs	1.000	NULL	pfam_Ankyrin_rpt,pfam_IQ_motif_EF-hand-BS,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,smart_IQ_motif_EF-hand-BS,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Ankyrin_rpt	-	no_errors	INVS	HGNC	ENSG00000119509				67	0	0	72	6	7.69231
RALGPS1	0	genome.wustl.edu	37	9	129728214	129728214	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	9	129728214	129728214	C	-	DEL	RALGPS1	ENST00000259351	human	ensembl	74_37	+1	known	frame_shift_del	c.149	p.P51fs	1.000	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_RasGRF_CDC25	-	no_errors	RALGPS1	HGNC	ENSG00000136828				58	0	0	63	4	5.97015
GPR107	0	genome.wustl.edu	37	9	132862925	132862927	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	9	132862925	132862927	CTC	-	DEL	GPR107	ENST00000372410	human	ensembl	74_37	+1	known	in_frame_del	c.957_959	p.S321in_frame_del	1.000:1.000:1.000	pfam_TM_rcpt_euk,pfam_Intimal_thickness-rel_rcpt	pfam_TM_rcpt_euk,pfam_Intimal_thickness-rel_rcpt	-	no_errors	GPR107	HGNC	ENSG00000148358				78	0	0	88	11	11.1111
NUP214	0	genome.wustl.edu	37	9	134073110	134073110	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	9	134073110	134073110	T	-	DEL	NUP214	ENST00000451030	human	ensembl	74_37	+1	known	frame_shift_del	c.4232	p.F1412fs	0.015	NULL	smart_WD40_repeat	-	no_errors	NUP214	HGNC	ENSG00000126883				90	0	0	99	11	10
WDR5	0	genome.wustl.edu	37	9	137019598	137019598	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	9	137019598	137019598	C	-	DEL	WDR5	ENST00000358625	human	ensembl	74_37	+1	known	frame_shift_del	c.642	p.V217fs	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_TIF_beta_prop-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR5	HGNC	ENSG00000196363				207	0	0	208	20	8.77193
CCDC171	0	genome.wustl.edu	37	9	15744290	15744290	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	9	15744290	15744290	A	-	DEL	CCDC171	ENST00000380701	human	ensembl	74_37	+1	known	frame_shift_del	c.2069	p.N692fs	1.000	superfamily_STAT_TF_coiled-coil	superfamily_STAT_TF_coiled-coil	-	no_errors	CCDC171	HGNC	ENSG00000164989				44	0	0	42	7	14.2857
PTENP1	0	genome.wustl.edu	37	9	33675365	33675365	+	RNA	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	9	33675365	33675365	A	-	DEL	PTENP1	ENST00000532280	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	PTENP1	HGNC	ENSG00000237984				16	0	0	11	7	38.8889
C9orf131	0	genome.wustl.edu	37	9	35043650	35043650	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	9	35043650	35043650	C	-	DEL	C9orf131	ENST00000312292	human	ensembl	74_37	+1	known	frame_shift_del	c.1024	p.C344fs	0.000	NULL	NULL	-	no_errors	C9orf131	HGNC	ENSG00000174038				397	0	0	390	35	8.23529
TJP2	0	genome.wustl.edu	37	9	71854929	71854929	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	9	71854929	71854929	T	-	DEL	TJP2	ENST00000539225	human	ensembl	74_37	+1	known	frame_shift_del	c.2525	p.F844fs	1.000	pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,smart_GK/Ca_channel_bsu,pfscan_Guanylate_kin-like	pfam_PDZ,pfam_GK/Ca_channel_bsu,pfam_SH3_2,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_PDZ,smart_GK/Ca_channel_bsu,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like,prints_ZonOcculS2,prints_ZonOcculdens	-	no_errors	TJP2	HGNC	ENSG00000119139				60	0	0	54	10	15.625
VPS13A	0	genome.wustl.edu	37	9	79897181	79897181	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	9	79897181	79897181	A	-	DEL	VPS13A	ENST00000360280	human	ensembl	74_37	+1	known	frame_shift_del	c.3109	p.K1038fs	0.998	NULL	pfam_VPSAP_dom,pfam_Autophagy-rel_C	-	no_errors	VPS13A	HGNC	ENSG00000197969				61	0	0	67	4	5.6338
NOL8	0	genome.wustl.edu	37	9	95069255	95069255	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	9	95069255	95069255	T	-	DEL	NOL8	ENST00000442668	human	ensembl	74_37	-1	known	frame_shift_del	c.2738	p.K913fs	0.660	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	NOL8	HGNC	ENSG00000198000				82	0	0	96	12	11.1111
SLC6A14	0	genome.wustl.edu	37	X	115582769	115582770	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	X	115582769	115582770	-	T	INS	SLC6A14	ENST00000371900	human	ensembl	74_37	+1	known	frame_shift_ins	c.1093_1094	p.S367fs	1.000:1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A14	HGNC	ENSG00000087916				68	0	0	60	11	15.493
USP26	0	genome.wustl.edu	37	X	132161205	132161205	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	X	132161205	132161205	A	-	DEL	USP26	ENST00000370832	human	ensembl	74_37	-1	known	frame_shift_del	c.1044	p.F348fs	0.541	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP26	HGNC	ENSG00000134588				40	0	0	44	11	20
SAGE1	0	genome.wustl.edu	37	X	134988609	134988609	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	X	134988609	134988609	A	-	DEL	SAGE1	ENST00000324447	human	ensembl	74_37	+1	known	frame_shift_del	c.635	p.N213fs	0.569	NULL	NULL	-	no_errors	SAGE1	HGNC	ENSG00000181433				163	0	0	136	28	17.0732
PRDX4	0	genome.wustl.edu	37	X	23693251	23693251	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4256-01A-01D-1126-08	TCGA-BR-4256-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	314e2003-3112-476a-b7c9-ecee8014938a	3537ea7a-6b33-4bdc-9e90-bfd976cdd753	X	23693251	23693251	A	-	DEL	PRDX4	ENST00000379331	human	ensembl	74_37	+1	known	frame_shift_del	c.504	p.R171fs	0.003	NULL	pfam_AhpC/TSA,pfam_Redoxin,superfamily_Thioredoxin-like_fold	-	no_errors	PRDX4	HGNC	ENSG00000123131				36	0	0	31	10	24.3902
