Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
APITD1	0	genome.wustl.edu	37	1	10502436	10502436	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	10502436	10502436	G	A	SNP	APITD1	ENST00000309048	human	ensembl	74_37	+1	known	missense	c.391	p.A131T	0.509	NULL	pfam_TFIID-31,superfamily_Histone-fold	-	no_errors	APITD1	HGNC	ENSG00000175279				99	0	0	54	22	28.9474
GNAI3	0	genome.wustl.edu	37	1	110134705	110134705	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	110134705	110134705	C	T	SNP	GNAI3	ENST00000369851	human	ensembl	74_37	+1	known	silent	c.915	p.C305	1.000	pfam_Gprotein_alpha_su,superfamily_P-loop_NTPase,smart_Gprotein_alpha_su,prints_Gprotein_alpha_I,prints_Fungi_Gprotein_alpha	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_I,prints_Fungi_Gprotein_alpha	-	no_errors	GNAI3	HGNC	ENSG00000065135				45	0	0	25	7	21.875
KCNA10	0	genome.wustl.edu	37	1	111060871	111060871	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	111060871	111060871	C	T	SNP	KCNA10	ENST00000369771	human	ensembl	74_37	-1	known	missense	c.539	p.R180Q	1.000	superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl_volt-dep_Kv1	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,pfam_PKD1_2_channel,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA10	HGNC	ENSG00000143105				87	0	0	33	8	19.5122
WNT2B	0	genome.wustl.edu	37	1	113057636	113057636	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	113057636	113057636	A	G	SNP	WNT2B	ENST00000369684	human	ensembl	74_37	+1	known	missense	c.323	p.Q108R	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt2	-	no_errors	WNT2B	HGNC	ENSG00000134245				37	0	0	18	9	33.3333
LRIG2	0	genome.wustl.edu	37	1	113666514	113666514	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	113666514	113666514	G	A	SNP	LRIG2	ENST00000361127	human	ensembl	74_37	+1	known	missense	c.2989	p.V997M	0.720	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRIG2	HGNC	ENSG00000198799				31	0	0	10	9	47.3684
MAGI3	0	genome.wustl.edu	37	1	114201800	114201800	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	114201800	114201800	T	C	SNP	MAGI3	ENST00000369611	human	ensembl	74_37	+1	known	missense	c.2728	p.S910P	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_WW_dom,pfam_GK/Ca_channel_bsu,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_PDZ,smart_GK/Ca_channel_bsu,smart_WW_dom,pfscan_PDZ,pfscan_WW_dom,pfscan_Guanylate_kin-like	-	no_errors	MAGI3	HGNC	ENSG00000081026				96	0	0	54	17	23.9437
PHTF1	0	genome.wustl.edu	37	1	114247302	114247302	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	114247302	114247302	G	A	SNP	PHTF1	ENST00000369604	human	ensembl	74_37	-1	known	missense	c.1789	p.R597C	1.000	NULL	pfam_TF_homeodomain_male	-	no_errors	PHTF1	HGNC	ENSG00000116793				84	0	0	41	10	19.6078
FBXO44	0	genome.wustl.edu	37	1	11716005	11716005	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	11716005	11716005	G	A	SNP	FBXO44	ENST00000251547	human	ensembl	74_37	+1	known	missense	c.113	p.R38Q	0.915	pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom	pfam_F-box-assoc_dom,pfam_F-box_dom,superfamily_Galactose-bd-like,superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom,pfscan_F-box-assoc_dom	-	no_errors	FBXO44	HGNC	ENSG00000132879				58	0	0	22	15	40.5405
CLCN6	0	genome.wustl.edu	37	1	11894557	11894557	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	11894557	11894557	G	A	SNP	CLCN6	ENST00000346436	human	ensembl	74_37	+1	known	missense	c.1703	p.G568E	1.000	pfam_Cl-channel_volt-gated,superfamily_Cl-channel_core	pfam_Cl-channel_volt-gated,pfam_CBS_dom,superfamily_Cl-channel_core,smart_CBS_dom,prints_Cl-channel_volt-gated,prints_Cl_channel-6	-	no_errors	CLCN6	HGNC	ENSG00000011021				91	0	0	60	20	25
PIAS3	0	genome.wustl.edu	37	1	145580520	145580520	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	145580520	145580520	G	A	SNP	PIAS3	ENST00000393045	human	ensembl	74_37	+1	known	missense	c.820	p.V274M	1.000	NULL	pfam_Znf_MIZ,smart_SAP_dom,pfscan_Znf_MIZ,pfscan_SAP_dom	-	no_errors	PIAS3	HGNC	ENSG00000131788				89	0	0	75	13	14.7727
ATAD3A	0	genome.wustl.edu	37	1	1455959	1455959	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	1455959	1455959	C	A	SNP	ATAD3A	ENST00000378755	human	ensembl	74_37	+1	known	missense	c.856	p.R286S	1.000	pfam_DUF3523	pfam_DUF3523,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	ATAD3A	HGNC	ENSG00000197785				82	0	0	36	18	33.3333
PRPF3	0	genome.wustl.edu	37	1	150307612	150307612	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	150307612	150307612	A	G	SNP	PRPF3	ENST00000324862	human	ensembl	74_37	+1	known	missense	c.935	p.D312G	1.000	pfam_Pre-mRNA_splic_Prp3	pfam_Pre-mRNA_splic_Prp3,pfam_DUF1115,pfam_PWI_dom,superfamily_PWI_dom,smart_PWI_dom	-	no_errors	PRPF3	HGNC	ENSG00000117360				57	0	0	49	7	12.5
RPRD2	0	genome.wustl.edu	37	1	150444651	150444651	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	150444651	150444651	A	G	SNP	RPRD2	ENST00000369068	human	ensembl	74_37	+1	known	missense	c.3227	p.D1076G	0.986	superfamily_Ricin_B_lectin	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,superfamily_Ricin_B_lectin,smart_CID_dom	-	no_errors	RPRD2	HGNC	ENSG00000163125				92	0	0	106	17	13.8211
CGN	0	genome.wustl.edu	37	1	151502010	151502010	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	151502010	151502010	G	A	SNP	CGN	ENST00000271636	human	ensembl	74_37	+1	known	missense	c.2081	p.R694Q	0.997	NULL	pfam_Myosin_tail	-	no_errors	CGN	HGNC	ENSG00000143375				24	0	0	43	3	6.52174
RORC	0	genome.wustl.edu	37	1	151786072	151786072	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	151786072	151786072	A	G	SNP	RORC	ENST00000392697	human	ensembl	74_37	-1	known	missense	c.1120	p.C374R	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd,prints_ThyrH_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_ROR_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_ThyrH_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	RORC	HGNC	ENSG00000143365				30	0	0	27	4	12.9032
TCHH	0	genome.wustl.edu	37	1	152082386	152082386	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	152082386	152082386	G	A	SNP	TCHH	ENST00000368804	human	ensembl	74_37	-1	known	missense	c.3307	p.R1103C	0.176	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	TCHH	HGNC	ENSG00000159450				99	0	0	88	19	17.757
FLG	0	genome.wustl.edu	37	1	152283156	152283156	+	Silent	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	152283156	152283156	T	C	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	silent	c.4206	p.S1402	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				343	0	0	329	59	15.2062
CRNN	0	genome.wustl.edu	37	1	152383276	152383276	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	152383276	152383276	C	A	SNP	CRNN	ENST00000271835	human	ensembl	74_37	-1	known	missense	c.282	p.E94D	0.118	NULL	pfam_S100_Ca-bd_sub,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	CRNN	HGNC	ENSG00000143536				111	1	0.892857	112	29	20.5674
SPRR2E	0	genome.wustl.edu	37	1	153066064	153066064	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	153066064	153066064	G	T	SNP	SPRR2E	ENST00000368750	human	ensembl	74_37	-1	known	missense	c.164	p.P55H	0.814	NULL	NULL	-	no_errors	SPRR2E	HGNC	ENSG00000203785				143	0	0	130	21	13.9073
S100A16	0	genome.wustl.edu	37	1	153580105	153580105	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	153580105	153580105	G	A	SNP	S100A16	ENST00000368703	human	ensembl	74_37	-1	known	missense	c.217	p.R73C	1.000	pfscan_EF_hand_dom	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	S100A16	HGNC	ENSG00000188643				48	0	0	39	8	17.0213
UBAP2L	0	genome.wustl.edu	37	1	154242685	154242685	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	154242685	154242685	G	A	SNP	UBAP2L	ENST00000361546	human	ensembl	74_37	+1	known	missense	c.3178	p.G1060R	1.000	NULL	pfam_DUF3697_Uba2,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBAP2L	HGNC	ENSG00000143569				67	0	0	51	13	20.3125
THBS3	0	genome.wustl.edu	37	1	155165843	155165843	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	155165843	155165843	C	T	SNP	THBS3	ENST00000368378	human	ensembl	74_37	-1	known	missense	c.2747	p.R916H	1.000	pfam_Thrombospondin_C,superfamily_ConA-like_lec_gl_sf	pfam_Thrombospondin_C,pfam_Thbs/COMP_coiled-coil,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	THBS3	HGNC	ENSG00000169231				166	0	0	142	27	15.9763
GBA	0	genome.wustl.edu	37	1	155206139	155206139	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	155206139	155206139	A	G	SNP	GBA	ENST00000327247	human	ensembl	74_37	-1	known	missense	c.1121	p.M374T	1.000	pfam_Glyco_hydro_30,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_30,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_30	-	no_errors	GBA	HGNC	ENSG00000177628				53	0	0	40	4	9.09091
ASH1L	0	genome.wustl.edu	37	1	155324299	155324299	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	155324299	155324299	T	C	SNP	ASH1L	ENST00000368346	human	ensembl	74_37	-1	known	missense	c.7193	p.N2398S	1.000	superfamily_Bromodomain	pfam_SET_dom,pfam_BAH_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_AT_hook_DNA-bd_motif,smart_AWS,smart_SET_dom,smart_Bromodomain,smart_Znf_PHD,smart_BAH_dom,pfscan_AWS,pfscan_BAH_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Bromodomain	-	no_errors	ASH1L	HGNC	ENSG00000116539				164	0	0	146	30	17.0455
PAQR6	0	genome.wustl.edu	37	1	156213673	156213673	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	156213673	156213673	C	T	SNP	PAQR6	ENST00000335852	human	ensembl	74_37	-1	known	silent	c.1035	p.E345	0.022	NULL	pfam_HlyIII-related	-	no_errors	PAQR6	HGNC	ENSG00000160781				264	0	0	255	56	18.0064
SMG5	0	genome.wustl.edu	37	1	156230321	156230321	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	156230321	156230321	C	T	SNP	SMG5	ENST00000361813	human	ensembl	74_37	-1	known	missense	c.2204	p.R735H	0.998	NULL	pfam_EST1,smart_PIN_dom	-	no_errors	SMG5	HGNC	ENSG00000198952				68	0	0	63	12	16
C1orf85	0	genome.wustl.edu	37	1	156264628	156264628	+	Silent	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	156264628	156264628	T	C	SNP	C1orf85	ENST00000362007	human	ensembl	74_37	-1	known	silent	c.300	p.L100	0.004	NULL	NULL	-	no_errors	C1orf85	HGNC	ENSG00000198715				120	0	0	121	25	17.1233
VHLL	0	genome.wustl.edu	37	1	156268937	156268937	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	156268937	156268937	G	A	SNP	VHLL	ENST00000339922	human	ensembl	74_37	-1	known	missense	c.44	p.A15V	0.002	NULL	pfam_VHL_tumour_suppress_b/a_dom,superfamily_VHL_tumour_suppress_b/a_dom	-	no_errors	VHLL	HGNC	ENSG00000189030				47	0	0	54	6	10
BCAN	0	genome.wustl.edu	37	1	156616821	156616821	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	156616821	156616821	G	A	SNP	BCAN	ENST00000329117	human	ensembl	74_37	+1	known	missense	c.320	p.R107H	1.000	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_Sushi_SCR_CCP,pfam_EG-like_dom,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,smart_EG-like_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,prints_Link,prints_AntifreezeII,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom	-	no_errors	BCAN	HGNC	ENSG00000132692				17	0	0	18	4	18.1818
BCAN	0	genome.wustl.edu	37	1	156622146	156622146	+	Silent	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	156622146	156622146	A	G	SNP	BCAN	ENST00000329117	human	ensembl	74_37	+1	known	silent	c.1404	p.E468	0.070	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_Sushi_SCR_CCP,pfam_EG-like_dom,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,smart_EG-like_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,prints_Link,prints_AntifreezeII,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom	-	no_errors	BCAN	HGNC	ENSG00000132692				22	0	0	31	10	24.3902
NES	0	genome.wustl.edu	37	1	156642953	156642953	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	156642953	156642953	G	A	SNP	NES	ENST00000368223	human	ensembl	74_37	-1	known	missense	c.1027	p.R343C	0.025	NULL	pfam_IF	-	no_errors	NES	HGNC	ENSG00000132688				19	0	0	18	2	10
RRNAD1	0	genome.wustl.edu	37	1	156704046	156704046	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	156704046	156704046	C	T	SNP	RRNAD1	ENST00000368216	human	ensembl	74_37	+1	known	silent	c.882	p.G294	0.009	NULL	NULL	-	no_errors	RRNAD1	HGNC	ENSG00000143303				20	0	0	22	8	26.6667
ARHGEF11	0	genome.wustl.edu	37	1	156909341	156909341	+	Silent	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	156909341	156909341	T	C	SNP	ARHGEF11	ENST00000368194	human	ensembl	74_37	-1	known	silent	c.4095	p.K1365	1.000	NULL	pfam_RGS-like_dom,pfam_DH-domain,pfam_PDZ,pfam_RGS_dom,superfamily_DH-domain,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_Regulat_G_prot_signal_superfam,smart_DH-domain,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Regulat_G_prot_signal_superfam,pfscan_DH-domain	-	no_errors	ARHGEF11	HGNC	ENSG00000132694				79	0	0	86	12	12.2449
FCRL4	0	genome.wustl.edu	37	1	157548310	157548310	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	157548310	157548310	C	T	SNP	FCRL4	ENST00000271532	human	ensembl	74_37	-1	known	silent	c.1383	p.L461	0.003	NULL	pfam_Immunoglobulin,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCRL4	HGNC	ENSG00000163518				60	0	0	52	4	7.14286
FCRL2	0	genome.wustl.edu	37	1	157738406	157738406	+	Silent	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	157738406	157738406	T	C	SNP	FCRL2	ENST00000361516	human	ensembl	74_37	-1	known	silent	c.681	p.S227	0.024	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCRL2	HGNC	ENSG00000132704				131	0	0	102	30	22.7273
OR10X1	0	genome.wustl.edu	37	1	158549421	158549421	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	158549421	158549421	G	A	SNP	OR10X1	ENST00000368150	human	ensembl	74_37	-1	known	missense	c.269	p.T90M	0.990	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10X1	HGNC	ENSG00000186400				85	0	0	48	55	53.3981
SPTA1	0	genome.wustl.edu	37	1	158615094	158615094	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	158615094	158615094	G	A	SNP	SPTA1	ENST00000368147	human	ensembl	74_37	-1	known	missense	c.4078	p.H1360Y	0.998	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554				91	0	0	82	15	15.4639
NHLH1	0	genome.wustl.edu	37	1	160340833	160340833	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	160340833	160340833	G	A	SNP	NHLH1	ENST00000302101	human	ensembl	74_37	+1	known	silent	c.312	p.T104	1.000	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	NHLH1	HGNC	ENSG00000171786				64	0	0	63	17	21.25
SLAMF7	0	genome.wustl.edu	37	1	160718187	160718187	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	160718187	160718187	G	T	SNP	SLAMF7	ENST00000368043	human	ensembl	74_37	+1	known	missense	c.259	p.G87C	0.000	pfam_Ig_V-set	pfam_Ig_V-set,pfscan_Ig-like_dom	-	no_errors	SLAMF7	HGNC	ENSG00000026751				76	0	0	49	6	10.9091
CD244	0	genome.wustl.edu	37	1	160803894	160803894	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	160803894	160803894	T	C	SNP	CD244	ENST00000368033	human	ensembl	74_37	-1	known	missense	c.922	p.T308A	0.001	NULL	pfam_NK_rcpt_2B4_Ig_dom,pfscan_Ig-like_dom	-	no_errors	CD244	HGNC	ENSG00000122223				106	0	0	96	17	15.0442
USF1	0	genome.wustl.edu	37	1	161012379	161012379	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	161012379	161012379	A	G	SNP	USF1	ENST00000368020	human	ensembl	74_37	-1	known	missense	c.140	p.V47A	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	USF1	HGNC	ENSG00000158773				41	0	0	26	8	23.5294
USP21	0	genome.wustl.edu	37	1	161134845	161134845	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	161134845	161134845	C	T	SNP	USP21	ENST00000289865	human	ensembl	74_37	+1	known	missense	c.1519	p.L507F	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP21	HGNC	ENSG00000143258				49	0	0	41	8	16.3265
HSPA6	0	genome.wustl.edu	37	1	161494672	161494672	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	161494672	161494672	T	C	SNP	HSPA6	ENST00000309758	human	ensembl	74_37	+1	known	missense	c.224	p.L75P	0.999	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA6	HGNC	ENSG00000173110				18	0	0	41	7	14.5833
HSPA6	0	genome.wustl.edu	37	1	161495689	161495689	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	161495689	161495689	C	T	SNP	HSPA6	ENST00000309758	human	ensembl	74_37	+1	known	missense	c.1241	p.T414M	0.042	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA6	HGNC	ENSG00000173110				23	0	0	22	6	21.4286
NUF2	0	genome.wustl.edu	37	1	163310207	163310207	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	163310207	163310207	C	T	SNP	NUF2	ENST00000497990	human	ensembl	74_37	+1	known	missense	c.656	p.P219L	0.986	NULL	pfam_Kinetochore_Nuf2	-	no_errors	NUF2	HGNC	ENSG00000143228				105	0	0	78	18	18.75
CDK11A	0	genome.wustl.edu	37	1	1635565	1635565	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	1635565	1635565	C	T	SNP	CDK11A	ENST00000404249	human	ensembl	74_37	-1	known	silent	c.1707	p.A569	0.164	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK11A	HGNC	ENSG00000008128				25	0	0	6	4	40
EPHA2	0	genome.wustl.edu	37	1	16459802	16459802	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	16459802	16459802	C	T	SNP	EPHA2	ENST00000358432	human	ensembl	74_37	-1	known	silent	c.1926	p.P642	0.005	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA2	HGNC	ENSG00000142627				58	0	0	35	15	30
MGST3	0	genome.wustl.edu	37	1	165623555	165623555	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	165623555	165623555	C	T	SNP	MGST3	ENST00000367886	human	ensembl	74_37	+1	known	nonsense	c.331	p.R111*	1.000	pfam_Membr-assoc_MAPEG	pfam_Membr-assoc_MAPEG	-	no_errors	MGST3	HGNC	ENSG00000143198				131	0	0	129	21	14
DCAF6	0	genome.wustl.edu	37	1	167971802	167971802	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	167971802	167971802	G	A	SNP	DCAF6	ENST00000367840	human	ensembl	74_37	+1	known	missense	c.986	p.R329Q	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_IQ_motif_EF-hand-BS,pfscan_WD40_repeat_dom	-	no_errors	DCAF6	HGNC	ENSG00000143164				72	0	0	65	21	24.4186
NADK	0	genome.wustl.edu	37	1	1687948	1687948	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	1687948	1687948	G	A	SNP	NADK	ENST00000344463	human	ensembl	74_37	-1	known	nonsense	c.928	p.R310*	1.000	superfamily_ATP-NAD_kinase_PpnK-typ	pfam_PolyP/ATP_NADK_prd,superfamily_ATP-NAD_kinase_PpnK-typ	-	no_errors	NADK	HGNC	ENSG00000008130				32	0	0	21	5	19.2308
METTL13	0	genome.wustl.edu	37	1	171763553	171763553	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	171763553	171763553	G	A	SNP	METTL13	ENST00000361735	human	ensembl	74_37	+1	known	missense	c.1711	p.V571I	1.000	pfam_Spermidine/spermine_synthase	pfam_Methyltransf_11,pfam_Spermidine/spermine_synthase	-	no_errors	METTL13	HGNC	ENSG00000010165				35	0	0	35	5	12.5
TNR	0	genome.wustl.edu	37	1	175325505	175325505	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	175325505	175325505	G	A	SNP	TNR	ENST00000263525	human	ensembl	74_37	-1	known	missense	c.3068	p.A1023V	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_Fibronectin_type3	-	no_errors	TNR	HGNC	ENSG00000116147				101	0	0	93	17	15.4545
RASAL2	0	genome.wustl.edu	37	1	178427415	178427415	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	178427415	178427415	A	G	SNP	RASAL2	ENST00000367649	human	ensembl	74_37	+1	known	missense	c.2988	p.I996M	1.000	pfam_DUF3498	pfam_DUF3498,pfam_RasGAP,pfam_Pleckstrin_homology,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,superfamily_PP1_inhibitor,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	RASAL2	HGNC	ENSG00000075391				70	0	0	45	7	13.4615
MR1	0	genome.wustl.edu	37	1	181021588	181021588	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	181021588	181021588	C	T	SNP	MR1	ENST00000367580	human	ensembl	74_37	+1	known	silent	c.822	p.N274	0.000	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like_dom	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom,prints_MHC_I_a	-	no_errors	MR1	HGNC	ENSG00000153029				65	0	0	44	9	16.9811
LAMC2	0	genome.wustl.edu	37	1	183190061	183190061	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	183190061	183190061	A	G	SNP	LAMC2	ENST00000264144	human	ensembl	74_37	+1	known	missense	c.605	p.Y202C	0.999	superfamily_Growth_fac_rcpt_N_dom	pfam_EGF_laminin,pfam_Laminin_B_type_IV,superfamily_Growth_fac_rcpt_N_dom,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin	-	no_errors	LAMC2	HGNC	ENSG00000058085				81	0	0	58	10	14.7059
HMCN1	0	genome.wustl.edu	37	1	185964206	185964206	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	185964206	185964206	G	A	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	silent	c.3765	p.T1255	0.000	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				93	0	0	76	16	17.3913
PRG4	0	genome.wustl.edu	37	1	186276818	186276818	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	186276818	186276818	C	T	SNP	PRG4	ENST00000445192	human	ensembl	74_37	+1	known	missense	c.1967	p.P656L	0.000	NULL	pfam_Somatomedin_B_dom,pfam_Hemopexin-like_repeat,superfamily_Hemopexin-like_dom,smart_Somatomedin_B_dom,smart_Hemopexin-like_repeat,prints_Somatomedin_B_chordata,pfscan_Somatomedin_B_dom	-	no_errors	PRG4	HGNC	ENSG00000116690				47	0	0	61	6	8.95522
PRG4	0	genome.wustl.edu	37	1	186276820	186276820	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	186276820	186276820	A	G	SNP	PRG4	ENST00000445192	human	ensembl	74_37	+1	known	missense	c.1969	p.T657A	0.000	NULL	pfam_Somatomedin_B_dom,pfam_Hemopexin-like_repeat,superfamily_Hemopexin-like_dom,smart_Somatomedin_B_dom,smart_Hemopexin-like_repeat,prints_Somatomedin_B_chordata,pfscan_Somatomedin_B_dom	-	no_errors	PRG4	HGNC	ENSG00000116690				46	0	0	61	6	8.95522
TPR	0	genome.wustl.edu	37	1	186300667	186300667	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	186300667	186300667	T	C	SNP	TPR	ENST00000367478	human	ensembl	74_37	-1	known	missense	c.5651	p.Q1884R	0.109	NULL	pfam_TPR_MLP1_2,superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	TPR	HGNC	ENSG00000047410				75	0	0	71	17	19.3182
TROVE2	0	genome.wustl.edu	37	1	193050593	193050593	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	193050593	193050593	G	A	SNP	TROVE2	ENST00000367441	human	ensembl	74_37	+1	known	missense	c.1186	p.A396T	1.000	NULL	pfam_TROVE,pfscan_TROVE	-	no_errors	TROVE2	HGNC	ENSG00000116747				48	0	0	31	10	24.3902
UBR4	0	genome.wustl.edu	37	1	19471342	19471342	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	19471342	19471342	T	C	SNP	UBR4	ENST00000375267	human	ensembl	74_37	-1	known	missense	c.8005	p.T2669A	1.000	superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481				77	0	0	41	3	6.81818
AKR7A3	0	genome.wustl.edu	37	1	19611227	19611227	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	19611227	19611227	G	A	SNP	AKR7A3	ENST00000361640	human	ensembl	74_37	-1	known	silent	c.657	p.P219	0.029	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom	-	no_errors	AKR7A3	HGNC	ENSG00000162482				115	1	0.862069	54	27	33.3333
ASPM	0	genome.wustl.edu	37	1	197053460	197053460	+	Silent	SNP	A	A	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	197053460	197053460	A	T	SNP	ASPM	ENST00000367409	human	ensembl	74_37	-1	known	silent	c.10428	p.P3476	0.765	NULL	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279				45	0	0	31	3	8.82353
PTPRC	0	genome.wustl.edu	37	1	198682089	198682089	+	Silent	SNP	A	A	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	198682089	198682089	A	T	SNP	PTPRC	ENST00000442510	human	ensembl	74_37	+1	known	silent	c.1179	p.G393	0.000	pirsf_Leukocyte_common_ag,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Leukocyte_common_ag,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Leukocyte_common_ag,pfam_PTP_recept_N,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRC	HGNC	ENSG00000081237				85	0	0	59	8	11.9403
ZNF281	0	genome.wustl.edu	37	1	200376939	200376939	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	200376939	200376939	C	T	SNP	ZNF281	ENST00000294740	human	ensembl	74_37	-1	known	missense	c.1895	p.R632Q	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF281	HGNC	ENSG00000162702				69	0	0	77	11	12.5
DDX59	0	genome.wustl.edu	37	1	200628222	200628222	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	200628222	200628222	C	T	SNP	DDX59	ENST00000331314	human	ensembl	74_37	-1	known	missense	c.995	p.R332Q	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Znf_HIT,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX59	HGNC	ENSG00000118197				98	0	0	97	28	22.4
C1orf106	0	genome.wustl.edu	37	1	200867455	200867455	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	200867455	200867455	C	A	SNP	C1orf106	ENST00000367342	human	ensembl	74_37	+1	known	missense	c.182	p.P61H	0.212	NULL	pfam_DUF3338	-	no_errors	C1orf106	HGNC	ENSG00000163362				87	0	0	75	16	17.5824
CHI3L1	0	genome.wustl.edu	37	1	203149635	203149635	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	203149635	203149635	C	T	SNP	CHI3L1	ENST00000255409	human	ensembl	74_37	-1	known	missense	c.857	p.R286Q	0.586	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	-	no_errors	CHI3L1	HGNC	ENSG00000133048				50	0	0	50	6	10.7143
FMOD	0	genome.wustl.edu	37	1	203317092	203317092	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	203317092	203317092	C	T	SNP	FMOD	ENST00000354955	human	ensembl	74_37	-1	known	missense	c.307	p.V103I	1.000	pfam_LRR-contain_N,smart_LRR-contain_N	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	FMOD	HGNC	ENSG00000122176				41	0	0	34	7	17.0732
ZC3H11A	0	genome.wustl.edu	37	1	203821387	203821387	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	203821387	203821387	C	T	SNP	ZC3H11A	ENST00000332127	human	ensembl	74_37	+1	known	missense	c.2293	p.P765S	0.969	NULL	smart_Znf_CCCH	-	no_errors	ZC3H11A	HGNC	ENSG00000058673				43	0	0	49	7	12.5
PIK3C2B	0	genome.wustl.edu	37	1	204438278	204438278	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	204438278	204438278	C	G	SNP	PIK3C2B	ENST00000367187	human	ensembl	74_37	-1	known	missense	c.653	p.G218A	0.253	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_dom,pfscan_C2_dom,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2B	HGNC	ENSG00000133056				216	0	0	211	49	18.8462
NFASC	0	genome.wustl.edu	37	1	204985644	204985644	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	204985644	204985644	A	G	SNP	NFASC	ENST00000367172	human	ensembl	74_37	+1	known	missense	c.4021	p.N1341D	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	NFASC	HGNC	ENSG00000163531				51	0	0	46	9	16.3636
CNTN2	0	genome.wustl.edu	37	1	205041113	205041113	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	205041113	205041113	G	A	SNP	CNTN2	ENST00000331830	human	ensembl	74_37	+1	known	silent	c.2583	p.A861	0.944	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN2	HGNC	ENSG00000184144				45	0	0	38	8	17.3913
DSTYK	0	genome.wustl.edu	37	1	205116774	205116774	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	205116774	205116774	A	G	SNP	DSTYK	ENST00000367162	human	ensembl	74_37	-1	known	missense	c.2702	p.I901T	1.000	smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	DSTYK	HGNC	ENSG00000133059				145	0	0	95	22	18.8034
TMCC2	0	genome.wustl.edu	37	1	205211172	205211172	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	205211172	205211172	G	T	SNP	TMCC2	ENST00000358024	human	ensembl	74_37	+1	known	missense	c.747	p.K249N	1.000	NULL	pfam_Predicted_TM_coiled-coil_2,superfamily_t-SNARE	-	no_errors	TMCC2	HGNC	ENSG00000133069				15	0	0	21	5	19.2308
CR1	0	genome.wustl.edu	37	1	207679272	207679272	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	207679272	207679272	C	T	SNP	CR1	ENST00000367049	human	ensembl	74_37	+1	known	missense	c.145	p.L49F	0.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR1	HGNC	ENSG00000203710				111	0	0	111	26	18.9781
CR1	0	genome.wustl.edu	37	1	207787753	207787753	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	207787753	207787753	C	T	SNP	CR1	ENST00000367049	human	ensembl	74_37	+1	known	nonsense	c.6580	p.R2194*	0.477	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR1	HGNC	ENSG00000203710				46	0	0	50	5	9.09091
CR1	0	genome.wustl.edu	37	1	207787831	207787831	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	207787831	207787831	G	T	SNP	CR1	ENST00000367049	human	ensembl	74_37	+1	known	nonsense	c.6658	p.E2220*	1.000	superfamily_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR1	HGNC	ENSG00000203710				64	0	0	57	5	8.06452
CR1L	0	genome.wustl.edu	37	1	207818592	207818592	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	207818592	207818592	T	A	SNP	CR1L	ENST00000508064	human	ensembl	74_37	+1	known	missense	c.14	p.V5D	0.000	NULL	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR1L	HGNC	ENSG00000197721				36	0	0	50	4	7.40741
PLXNA2	0	genome.wustl.edu	37	1	208216416	208216416	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	208216416	208216416	C	A	SNP	PLXNA2	ENST00000367033	human	ensembl	74_37	-1	known	missense	c.4007	p.R1336L	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA2	HGNC	ENSG00000076356				31	0	0	34	4	10.5263
KIF17	0	genome.wustl.edu	37	1	21031184	21031184	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	21031184	21031184	C	T	SNP	KIF17	ENST00000247986	human	ensembl	74_37	-1	known	silent	c.879	p.T293	0.248	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF17	HGNC	ENSG00000117245				44	0	0	32	7	17.9487
USH2A	0	genome.wustl.edu	37	1	215812576	215812576	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	215812576	215812576	G	T	SNP	USH2A	ENST00000366943	human	ensembl	74_37	-1	known	missense	c.14973	p.F4991L	0.998	NULL	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781				149	0	0	131	32	19.6319
USH2A	0	genome.wustl.edu	37	1	215814033	215814033	+	Silent	SNP	A	A	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	215814033	215814033	A	C	SNP	USH2A	ENST00000366943	human	ensembl	74_37	-1	known	silent	c.14835	p.S4945	0.000	NULL	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781				91	0	0	66	5	7.04225
USH2A	0	genome.wustl.edu	37	1	215847625	215847625	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	215847625	215847625	C	A	SNP	USH2A	ENST00000366943	human	ensembl	74_37	-1	known	missense	c.13628	p.R4543M	0.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781				96	0	0	83	15	15.3061
RAB3GAP2	0	genome.wustl.edu	37	1	220363814	220363814	+	Silent	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	220363814	220363814	A	G	SNP	RAB3GAP2	ENST00000358951	human	ensembl	74_37	-1	known	silent	c.1536	p.S512	0.993	superfamily_WD40_repeat_dom	superfamily_WD40_repeat_dom	-	no_errors	RAB3GAP2	HGNC	ENSG00000118873				115	0	0	101	23	18.5484
NVL	0	genome.wustl.edu	37	1	224424208	224424208	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	224424208	224424208	G	A	SNP	NVL	ENST00000281701	human	ensembl	74_37	-1	known	missense	c.2366	p.T789M	0.986	superfamily_P-loop_NTPase	pfam_ATPase_AAA_core,pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_ATPase_AAA-2,pfam_ATPase_dyneun-rel_AAA,pfam_Zeta_toxin_domain,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	NVL	HGNC	ENSG00000143748				72	0	0	52	11	17.4603
EPHX1	0	genome.wustl.edu	37	1	226027630	226027630	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	226027630	226027630	A	G	SNP	EPHX1	ENST00000272167	human	ensembl	74_37	+1	known	missense	c.823	p.T275A	0.935	pfam_AB_hydrolase_1,pirsf_Epoxide_hydrolase	pfam_Epoxide_hydro_N,pfam_AB_hydrolase_1,pirsf_Epoxide_hydrolase,prints_Epox_hydrolase-like	-	no_errors	EPHX1	HGNC	ENSG00000143819				125	0	0	109	20	15.5039
SDE2	0	genome.wustl.edu	37	1	226175749	226175749	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	226175749	226175749	C	A	SNP	SDE2	ENST00000272091	human	ensembl	74_37	-1	known	nonsense	c.982	p.E328*	0.002	NULL	superfamily_Mopterin_synth/thiamin_S_b	-	no_errors	SDE2	HGNC	ENSG00000143751				93	0	0	88	13	12.8713
LIN9	0	genome.wustl.edu	37	1	226426761	226426761	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	226426761	226426761	G	A	SNP	LIN9	ENST00000328205	human	ensembl	74_37	-1	known	missense	c.1204	p.R402W	1.000	NULL	pfam_LIN-9/ALY1	-	no_errors	LIN9	HGNC	ENSG00000183814				78	0	0	71	13	15.4762
CDC42BPA	0	genome.wustl.edu	37	1	227239649	227239649	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	227239649	227239649	C	T	SNP	CDC42BPA	ENST00000366766	human	ensembl	74_37	-1	known	missense	c.2942	p.S981N	0.434	NULL	pfam_Citron,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Pkinase_C,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,superfamily_WD40_repeat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,smart_CRIB_dom,pfscan_CRIB_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	CDC42BPA	HGNC	ENSG00000143776				88	0	0	66	14	17.5
TAF5L	0	genome.wustl.edu	37	1	229737984	229737984	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	229737984	229737984	G	A	SNP	TAF5L	ENST00000258281	human	ensembl	74_37	-1	known	silent	c.930	p.D310	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,pfam_TFIID-su_WD40-assoc_reg,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TAF5L	HGNC	ENSG00000135801				55	0	0	59	7	10.6061
SPRTN	0	genome.wustl.edu	37	1	231488454	231488454	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	231488454	231488454	A	T	SNP	SPRTN	ENST00000295050	human	ensembl	74_37	+1	known	missense	c.817	p.I273F	0.000	NULL	pfam_SprT-like_domain,smart_SprT-like_domain,smart_Znf_Rad18_put	-	no_errors	SPRTN	HGNC	ENSG00000010072				70	0	0	61	9	12.8571
PCNXL2	0	genome.wustl.edu	37	1	233120166	233120166	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	233120166	233120166	G	A	SNP	PCNXL2	ENST00000258229	human	ensembl	74_37	-1	known	nonsense	c.6298	p.R2100*	0.000	NULL	pfam_Pecanex,superfamily_Trypsin-like_Pept_dom	-	no_errors	PCNXL2	HGNC	ENSG00000135749				49	0	0	42	14	25
HEATR1	0	genome.wustl.edu	37	1	236740226	236740226	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	236740226	236740226	G	T	SNP	HEATR1	ENST00000366582	human	ensembl	74_37	-1	known	missense	c.2779	p.L927M	0.832	superfamily_ARM-type_fold	pfam_BP28_C_dom,pfam_U3snoRNP10,superfamily_ARM-type_fold	-	no_errors	HEATR1	HGNC	ENSG00000119285				82	0	0	79	6	7.05882
ACTN2	0	genome.wustl.edu	37	1	236925910	236925910	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	236925910	236925910	C	T	SNP	ACTN2	ENST00000366578	human	ensembl	74_37	+1	known	silent	c.2676	p.S892	0.265	NULL	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	ACTN2	HGNC	ENSG00000077522				26	0	0	13	3	18.75
RYR2	0	genome.wustl.edu	37	1	237732550	237732550	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	237732550	237732550	C	T	SNP	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	silent	c.3523	p.L1175	0.995	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626				36	0	0	24	9	27.2727
RYR2	0	genome.wustl.edu	37	1	237791158	237791158	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	237791158	237791158	C	T	SNP	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	missense	c.6212	p.S2071F	0.997	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626				21	0	0	31	11	26.1905
MAP1LC3C	0	genome.wustl.edu	37	1	242159681	242159681	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	242159681	242159681	G	A	SNP	MAP1LC3C	ENST00000357246	human	ensembl	74_37	-1	known	silent	c.228	p.R76	1.000	pfam_Atg8_fam,pfam_Atg12	pfam_Atg8_fam,pfam_Atg12	-	no_errors	MAP1LC3C	HGNC	ENSG00000197769				59	0	0	53	7	11.6667
CEP170	0	genome.wustl.edu	37	1	243303325	243303325	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	243303325	243303325	C	T	SNP	CEP170	ENST00000366542	human	ensembl	74_37	-1	known	missense	c.4144	p.G1382S	0.998	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain,superfamily_Fibronectin_type3,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	CEP170	HGNC	ENSG00000143702				58	0	0	37	8	17.7778
ZNF496	0	genome.wustl.edu	37	1	247464263	247464263	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	247464263	247464263	C	T	SNP	ZNF496	ENST00000366498	human	ensembl	74_37	-1	known	missense	c.1430	p.G477E	0.998	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF496	HGNC	ENSG00000162714				60	0	0	44	13	22.807
OR2G2	0	genome.wustl.edu	37	1	247751877	247751877	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	247751877	247751877	G	A	SNP	OR2G2	ENST00000320065	human	ensembl	74_37	+1	known	silent	c.216	p.L72	0.245	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2G2	HGNC	ENSG00000177489				116	0	0	99	19	16.1017
OR2G3	0	genome.wustl.edu	37	1	247769166	247769166	+	Silent	SNP	T	T	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	247769166	247769166	T	G	SNP	OR2G3	ENST00000320002	human	ensembl	74_37	+1	known	silent	c.279	p.T93	0.008	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2G3	HGNC	ENSG00000177476				238	0	0	204	47	18.7251
OR2M5	0	genome.wustl.edu	37	1	248308964	248308964	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	248308964	248308964	G	A	SNP	OR2M5	ENST00000366476	human	ensembl	74_37	+1	known	missense	c.515	p.R172Q	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2M5	HGNC	ENSG00000162727				288	0	0	236	47	16.6078
C1orf63	0	genome.wustl.edu	37	1	25569052	25569052	+	RNA	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	25569052	25569052	T	C	SNP	C1orf63	ENST00000475766	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.077	-	-	-	no_errors	C1orf63	HGNC	ENSG00000117616				52	0	0	33	10	23.2558
CNKSR1	0	genome.wustl.edu	37	1	26506988	26506988	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	26506988	26506988	C	T	SNP	CNKSR1	ENST00000374253	human	ensembl	74_37	+1	known	silent	c.97	p.L33	1.000	pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_CRIC_domain_Chordata,pfam_Pleckstrin_homology,pfam_SAM_type1,superfamily_SAM/pointed,superfamily_PDZ,smart_SAM,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_SAM	-	no_errors	CNKSR1	HGNC	ENSG00000142675				62	0	0	42	3	6.66667
NUDC	0	genome.wustl.edu	37	1	27269258	27269258	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	27269258	27269258	G	A	SNP	NUDC	ENST00000321265	human	ensembl	74_37	+1	known	silent	c.537	p.S179	0.862	pfam_CS_dom,superfamily_HSP20-like_chaperone,pfscan_CS_dom	pfam_CS_dom,superfamily_HSP20-like_chaperone,pfscan_CS_dom	-	no_errors	NUDC	HGNC	ENSG00000090273				40	0	0	19	15	44.1176
HCRTR1	0	genome.wustl.edu	37	1	32086581	32086581	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	32086581	32086581	G	A	SNP	HCRTR1	ENST00000373706	human	ensembl	74_37	+1	known	silent	c.516	p.S172	0.122	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Orexin_rcpt,prints_GPCR_Rhodpsn,prints_Orexin_rcpt_1,prints_NPY_rcpt	-	no_errors	HCRTR1	HGNC	ENSG00000121764				25	0	0	11	6	35.2941
COL16A1	0	genome.wustl.edu	37	1	32150143	32150143	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	32150143	32150143	G	A	SNP	COL16A1	ENST00000271069	human	ensembl	74_37	-1	known	missense	c.2138	p.A713V	0.000	pfam_Collagen	pfam_Collagen,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	-	no_errors	COL16A1	HGNC	ENSG00000084636				53	0	0	40	16	28.5714
LCK	0	genome.wustl.edu	37	1	32745576	32745576	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	32745576	32745576	C	T	SNP	LCK	ENST00000333070	human	ensembl	74_37	+1	known	silent	c.1266	p.N422	0.028	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	LCK	HGNC	ENSG00000182866				51	0	0	26	13	33.3333
PRDM16	0	genome.wustl.edu	37	1	3342751	3342751	+	Silent	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	3342751	3342751	T	C	SNP	PRDM16	ENST00000270722	human	ensembl	74_37	+1	known	silent	c.3246	p.N1082	1.000	NULL	pfam_Znf_C2H2,pfam_Znf_BED_prd,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM16	HGNC	ENSG00000142611				111	0	0	65	21	24.4186
CSMD2	0	genome.wustl.edu	37	1	34180274	34180274	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	34180274	34180274	G	A	SNP	CSMD2	ENST00000373381	human	ensembl	74_37	-1	known	missense	c.3319	p.P1107S	1.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904				73	0	0	59	24	28.9157
AGO1	0	genome.wustl.edu	37	1	36354182	36354182	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	36354182	36354182	G	T	SNP	AGO1	ENST00000373204	human	ensembl	74_37	+1	known	missense	c.180	p.K60N	1.000	superfamily_PAZ_dom	pfam_Piwi,pfam_PAZ_dom,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	AGO1	HGNC	ENSG00000092847				93	0	0	48	13	21.3115
LSM10	0	genome.wustl.edu	37	1	36859607	36859607	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	36859607	36859607	G	A	SNP	LSM10	ENST00000315732	human	ensembl	74_37	-1	known	missense	c.124	p.R42C	1.000	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc	-	no_errors	LSM10	HGNC	ENSG00000181817				77	0	0	31	14	31.1111
CEP104	0	genome.wustl.edu	37	1	3755627	3755627	+	Silent	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	3755627	3755627	T	C	SNP	CEP104	ENST00000378230	human	ensembl	74_37	-1	known	silent	c.792	p.E264	0.973	NULL	superfamily_Galactose-bd-like,superfamily_ARM-type_fold	-	no_errors	CEP104	HGNC	ENSG00000116198				114	0	0	57	20	25.974
MACF1	0	genome.wustl.edu	37	1	39900152	39900152	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	39900152	39900152	C	T	SNP	MACF1	ENST00000317713	human	ensembl	74_37	+1	known	missense	c.11446	p.R3816C	1.000	smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	MACF1	HGNC	ENSG00000127603				84	0	0	43	16	27.1186
SLC6A9	0	genome.wustl.edu	37	1	44474178	44474178	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	44474178	44474178	T	C	SNP	SLC6A9	ENST00000360584	human	ensembl	74_37	-1	known	missense	c.656	p.Y219C	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_glycine_GLY1	-	no_errors	SLC6A9	HGNC	ENSG00000196517				61	0	0	41	14	25.4545
ZSWIM5	0	genome.wustl.edu	37	1	45553698	45553698	+	Silent	SNP	G	G	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	45553698	45553698	G	T	SNP	ZSWIM5	ENST00000359600	human	ensembl	74_37	-1	known	silent	c.807	p.S269	1.000	NULL	pfscan_Znf_SWIM	-	no_errors	ZSWIM5	HGNC	ENSG00000162415				168	0	0	79	24	23.301
MKNK1	0	genome.wustl.edu	37	1	47046273	47046273	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	47046273	47046273	G	A	SNP	MKNK1	ENST00000371946	human	ensembl	74_37	-1	known	missense	c.163	p.L55F	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MKNK1	HGNC	ENSG00000079277				39	0	0	18	7	28
BTF3L4	0	genome.wustl.edu	37	1	52551842	52551842	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	52551842	52551842	A	G	SNP	BTF3L4	ENST00000489308	human	ensembl	74_37	+1	novel	missense	c.227	p.Q76R	1.000	NULL	NULL	-	no_errors	BTF3L4	HGNC	ENSG00000134717				39	0	0	16	15	48.3871
TCEANC2	0	genome.wustl.edu	37	1	54554360	54554360	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	54554360	54554360	A	G	SNP	TCEANC2	ENST00000371331	human	ensembl	74_37	+1	known	missense	c.425	p.E142G	1.000	superfamily_TFIIS_N,superfamily_TFIIS_cen_dom,smart_TFIIS/CRSP70_N_sub	pfam_TFIIS_N,superfamily_TFIIS_N,superfamily_TFIIS_cen_dom,smart_TFIIS/CRSP70_N_sub	-	no_errors	TCEANC2	HGNC	ENSG00000116205				34	0	0	21	5	19.2308
C8A	0	genome.wustl.edu	37	1	57347128	57347128	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	57347128	57347128	C	A	SNP	C8A	ENST00000361249	human	ensembl	74_37	+1	known	missense	c.475	p.L159M	1.000	NULL	pfam_MACPF,pfam_LDrepeatLR_classA_rpt,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,pfscan_LDrepeatLR_classA_rpt,pfscan_Thrombospondin_1_rpt,prints_MAC_perforin	-	no_errors	C8A	HGNC	ENSG00000157131				90	0	0	51	13	20.3125
DNAJC6	0	genome.wustl.edu	37	1	65830386	65830386	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	65830386	65830386	G	T	SNP	DNAJC6	ENST00000371069	human	ensembl	74_37	+1	known	missense	c.262	p.G88W	1.000	NULL	pfam_Tensin_phosphatase_C2-dom,pfam_DnaJ_domain,superfamily_DnaJ_domain,superfamily_C2_dom,smart_DnaJ_domain,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom,pfscan_DnaJ_domain	-	no_errors	DNAJC6	HGNC	ENSG00000116675				111	0	0	54	24	30.7692
RERE	0	genome.wustl.edu	37	1	8421436	8421436	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	8421436	8421436	T	C	SNP	RERE	ENST00000337907	human	ensembl	74_37	-1	known	missense	c.2131	p.T711A	1.000	pfam_Atrophin-like	pfam_Atrophin-like,pfam_BAH_dom,pfam_ELM2_dom,pfam_Znf_GATA,superfamily_Homeodomain-like,smart_BAH_dom,smart_SANT/Myb,smart_Znf_GATA,pfscan_BAH_dom,pfscan_ELM2_dom	-	no_errors	RERE	HGNC	ENSG00000142599				52	0	0	37	4	9.7561
PRKACB	0	genome.wustl.edu	37	1	84679841	84679841	+	Silent	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	84679841	84679841	A	G	SNP	PRKACB	ENST00000370685	human	ensembl	74_37	+1	known	silent	c.912	p.R304	0.984	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PRKACB	HGNC	ENSG00000142875				32	0	0	20	3	13.0435
COL24A1	0	genome.wustl.edu	37	1	86590960	86590960	+	Silent	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	86590960	86590960	A	G	SNP	COL24A1	ENST00000370571	human	ensembl	74_37	-1	known	silent	c.1059	p.T353	0.066	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL24A1	HGNC	ENSG00000171502				97	0	0	41	15	26.7857
LRRC8B	0	genome.wustl.edu	37	1	90049770	90049770	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	90049770	90049770	G	A	SNP	LRRC8B	ENST00000330947	human	ensembl	74_37	+1	known	missense	c.1561	p.V521I	0.959	smart_Leu-rich_rpt_typical-subtyp	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8B	HGNC	ENSG00000197147				92	0	0	44	22	33.3333
ZNF326	0	genome.wustl.edu	37	1	90473078	90473078	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	90473078	90473078	C	T	SNP	ZNF326	ENST00000340281	human	ensembl	74_37	+1	known	silent	c.384	p.G128	1.000	NULL	pfam_AKAP95	-	no_errors	ZNF326	HGNC	ENSG00000162664				132	1	0.75188	84	27	24.3243
BTBD8	0	genome.wustl.edu	37	1	92568094	92568094	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	92568094	92568094	A	G	SNP	BTBD8	ENST00000342818	human	ensembl	74_37	+1	known	missense	c.412	p.M138V	0.000	smart_BTB/POZ-like	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	BTBD8	HGNC	ENSG00000189195				43	0	0	15	14	48.2759
CCDC18	0	genome.wustl.edu	37	1	93698101	93698101	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	93698101	93698101	C	G	SNP	CCDC18	ENST00000557479	human	ensembl	74_37	+1	known	missense	c.2765	p.T922R	0.998	NULL	superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	CCDC18	HGNC	ENSG00000122483				123	0	0	70	25	26.3158
PTBP2	0	genome.wustl.edu	37	1	97243163	97243163	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	97243163	97243163	C	G	SNP	PTBP2	ENST00000394184	human	ensembl	74_37	+1	known	missense	c.488	p.A163G	1.000	tigrfam_HnRNP-L_PTB	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP-L_PTB	-	no_errors	PTBP2	HGNC	ENSG00000117569				48	0	0	23	11	32.3529
HPS1	0	genome.wustl.edu	37	10	100182223	100182223	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	10	100182223	100182223	C	T	SNP	HPS1	ENST00000325103	human	ensembl	74_37	-1	known	missense	c.1646	p.R549H	1.000	NULL	NULL	-	no_errors	HPS1	HGNC	ENSG00000107521				111	0	0	60	15	20
ABCC2	0	genome.wustl.edu	37	10	101553677	101553677	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	10	101553677	101553677	G	A	SNP	ABCC2	ENST00000370449	human	ensembl	74_37	+1	known	missense	c.497	p.C166Y	1.000	tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC2	HGNC	ENSG00000023839				77	0	0	37	10	21.2766
FAM178A	0	genome.wustl.edu	37	10	102710474	102710474	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	10	102710474	102710474	A	C	SNP	FAM178A	ENST00000370269	human	ensembl	74_37	+1	known	missense	c.3294	p.E1098D	1.000	NULL	NULL	-	no_errors	FAM178A	HGNC	ENSG00000119906				38	0	0	14	5	26.3158
BTRC	0	genome.wustl.edu	37	10	103292822	103292822	+	Silent	SNP	G	G	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	10	103292822	103292822	G	T	SNP	BTRC	ENST00000370187	human	ensembl	74_37	+1	known	silent	c.1092	p.T364	0.067	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	pfam_WD40_repeat,pfam_Beta-TrCP_D,pfam_F-box_dom,superfamily_WD40_repeat_dom,superfamily_F-box_dom,smart_F-box_dom,smart_WD40_repeat,pfscan_F-box_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	BTRC	HGNC	ENSG00000166167				123	1	0.806452	59	14	19.1781
BTRC	0	genome.wustl.edu	37	10	103295163	103295163	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	10	103295163	103295163	G	A	SNP	BTRC	ENST00000370187	human	ensembl	74_37	+1	known	missense	c.1400	p.R467Q	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Beta-TrCP_D,pfam_F-box_dom,superfamily_WD40_repeat_dom,superfamily_F-box_dom,smart_F-box_dom,smart_WD40_repeat,pfscan_F-box_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	BTRC	HGNC	ENSG00000166167				62	0	0	39	11	22
PSD	0	genome.wustl.edu	37	10	104173805	104173805	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	10	104173805	104173805	G	A	SNP	PSD	ENST00000020673	human	ensembl	74_37	-1	known	missense	c.1274	p.S425L	0.999	NULL	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom,prints_PH_dom-spectrin-type	-	no_errors	PSD	HGNC	ENSG00000059915				68	0	0	27	12	30.7692
COL17A1	0	genome.wustl.edu	37	10	105793033	105793033	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	10	105793033	105793033	G	A	SNP	COL17A1	ENST00000353479	human	ensembl	74_37	-1	known	silent	c.4257	p.Y1419	1.000	NULL	pfam_Collagen	-	no_errors	COL17A1	HGNC	ENSG00000065618				13	0	0	7	4	36.3636
COL17A1	0	genome.wustl.edu	37	10	105798255	105798255	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	10	105798255	105798255	G	A	SNP	COL17A1	ENST00000353479	human	ensembl	74_37	-1	known	silent	c.2979	p.G993	0.813	NULL	pfam_Collagen	-	no_errors	COL17A1	HGNC	ENSG00000065618				93	0	0	47	26	35.6164
SMC3	0	genome.wustl.edu	37	10	112343281	112343281	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	10	112343281	112343281	A	G	SNP	SMC3	ENST00000361804	human	ensembl	74_37	+1	known	missense	c.944	p.E315G	1.000	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase	pfam_RecF/RecN/SMC_N,pfam_SMC_hinge,superfamily_P-loop_NTPase,superfamily_SMC_hinge,smart_SMC_hinge	-	no_errors	SMC3	HGNC	ENSG00000108055				82	0	0	47	11	18.9655
EMX2	0	genome.wustl.edu	37	10	119305240	119305240	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	10	119305240	119305240	G	A	SNP	EMX2	ENST00000553456	human	ensembl	74_37	+1	known	silent	c.504	p.R168	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa,prints_HTH_motif	-	no_errors	EMX2	HGNC	ENSG00000170370				30	0	0	14	12	46.1538
TIAL1	0	genome.wustl.edu	37	10	121339499	121339499	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	10	121339499	121339499	A	G	SNP	TIAL1	ENST00000369093	human	ensembl	74_37	-1	known	missense	c.446	p.M149T	1.000	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TIAL1	HGNC	ENSG00000151923				53	0	0	22	8	26.6667
TACC2	0	genome.wustl.edu	37	10	123892188	123892188	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	10	123892188	123892188	G	A	SNP	TACC2	ENST00000334433	human	ensembl	74_37	+1	known	missense	c.5638	p.A1880T	0.020	NULL	pfam_TACC	-	no_errors	TACC2	HGNC	ENSG00000138162				47	0	0	23	11	32.3529
DMBT1	0	genome.wustl.edu	37	10	124391375	124391375	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	10	124391375	124391375	C	T	SNP	DMBT1	ENST00000338354	human	ensembl	74_37	+1	known	silent	c.5964	p.N1988	0.000	superfamily_Srcr_rcpt-rel	pfam_SRCR,pfam_CUB_dom,pfam_ZP_dom,superfamily_Srcr_rcpt-rel,superfamily_CUB_dom,smart_Srcr_rcpt-rel,smart_CUB_dom,smart_ZP_dom,pfscan_CUB_dom,pfscan_SRCR,pfscan_ZP_dom,prints_SRCR	-	no_errors	DMBT1	HGNC	ENSG00000187908				53	0	0	30	7	18.9189
FAM24A	0	genome.wustl.edu	37	10	124671216	124671216	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	10	124671216	124671216	C	T	SNP	FAM24A	ENST00000368894	human	ensembl	74_37	+1	known	silent	c.66	p.A22	0.000	NULL	NULL	-	no_errors	FAM24A	HGNC	ENSG00000203795				356	0	0	188	60	24.1935
BUB3	0	genome.wustl.edu	37	10	124917344	124917344	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	10	124917344	124917344	T	C	SNP	BUB3	ENST00000368865	human	ensembl	74_37	+1	known	missense	c.365	p.L122P	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	BUB3	HGNC	ENSG00000154473				63	0	0	32	17	34.6939
C10orf137	0	genome.wustl.edu	37	10	127412448	127412448	+	Silent	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	10	127412448	127412448	A	G	SNP	C10orf137	ENST00000356792	human	ensembl	74_37	+1	known	silent	c.453	p.G151	0.666	NULL	NULL	-	no_errors	C10orf137	HGNC	ENSG00000107938				199	0	0	124	7	5.34351
DOCK1	0	genome.wustl.edu	37	10	128795065	128795065	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	10	128795065	128795065	C	A	SNP	DOCK1	ENST00000280333	human	ensembl	74_37	+1	known	missense	c.527	p.P176Q	1.000	NULL	pfam_DOCK_C,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,superfamily_Cyt_c-like_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK1	HGNC	ENSG00000150760				160	0	0	79	31	28.1818
PAOX	0	genome.wustl.edu	37	10	135195102	135195102	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	10	135195102	135195102	G	A	SNP	PAOX	ENST00000278060	human	ensembl	74_37	+1	known	silent	c.807	p.S269	0.010	pfam_Amino_oxidase	pfam_Amino_oxidase	-	no_errors	PAOX	HGNC	ENSG00000148832				38	0	0	28	14	33.3333
PAOX	0	genome.wustl.edu	37	10	135195153	135195153	+	Silent	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	10	135195153	135195153	C	A	SNP	PAOX	ENST00000278060	human	ensembl	74_37	+1	known	silent	c.858	p.T286	0.061	pfam_Amino_oxidase	pfam_Amino_oxidase	-	no_errors	PAOX	HGNC	ENSG00000148832				40	0	0	20	11	35.4839
FAM171A1	0	genome.wustl.edu	37	10	15290697	15290697	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	10	15290697	15290697	G	A	SNP	FAM171A1	ENST00000378116	human	ensembl	74_37	-1	known	missense	c.695	p.T232M	0.974	pfam_Uncharacterised_FAM171	pfam_Uncharacterised_FAM171	-	no_errors	FAM171A1	HGNC	ENSG00000148468				52	0	0	31	7	18.4211
CUBN	0	genome.wustl.edu	37	10	16932369	16932369	+	Splice_Site	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	10	16932369	16932369	C	T	SNP	CUBN	ENST00000377833	human	ensembl	74_37	-1	known	splice_site	c.8755+1	e55+1	1.000	-	-	-	no_errors	CUBN	HGNC	ENSG00000107611				50	0	0	33	8	19.5122
STAM	0	genome.wustl.edu	37	10	17747022	17747022	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	10	17747022	17747022	A	G	SNP	STAM	ENST00000377524	human	ensembl	74_37	+1	known	missense	c.1054	p.R352G	1.000	NULL	pfam_VHS,pfam_SH3_domain,pfam_SH3_2,pfam_Ubiquitin-int_motif,superfamily_ENTH_VHS,superfamily_SH3_domain,smart_VHS_subgr,smart_SH3_domain,pfscan_SH3_domain,pfscan_Ubiquitin-int_motif,pfscan_VHS,prints_SH3_domain,prints_p67phox	-	no_errors	STAM	HGNC	ENSG00000136738				64	0	0	30	11	26.8293
KIAA1462	0	genome.wustl.edu	37	10	30336525	30336525	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	10	30336525	30336525	G	A	SNP	KIAA1462	ENST00000375377	human	ensembl	74_37	-1	known	missense	c.217	p.R73C	0.001	NULL	NULL	-	no_errors	KIAA1462	HGNC	ENSG00000165757				35	0	0	13	7	35
MAP3K8	0	genome.wustl.edu	37	10	30748255	30748255	+	Silent	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	10	30748255	30748255	A	G	SNP	MAP3K8	ENST00000263056	human	ensembl	74_37	+1	known	silent	c.1098	p.E366	0.910	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K8	HGNC	ENSG00000107968				62	0	0	36	15	29.4118
PITRM1	0	genome.wustl.edu	37	10	3180476	3180476	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	10	3180476	3180476	C	A	SNP	PITRM1	ENST00000380989	human	ensembl	74_37	-1	known	nonsense	c.2974	p.E992*	1.000	superfamily_Metalloenz_LuxS/M16	pfam_Peptidase_M16C_assoc,pfam_Peptidase_M16_C,pfam_Pept_M16_N,superfamily_Metalloenz_LuxS/M16	-	no_errors	PITRM1	HGNC	ENSG00000107959				32	0	0	16	6	27.2727
ARHGAP12	0	genome.wustl.edu	37	10	32097965	32097965	+	Silent	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	10	32097965	32097965	A	G	SNP	ARHGAP12	ENST00000344936	human	ensembl	74_37	-1	known	silent	c.2220	p.P740	0.986	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_WW_dom,smart_SH3_domain,smart_WW_dom,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_WW_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP12	HGNC	ENSG00000165322				33	0	0	19	8	29.6296
PARD3	0	genome.wustl.edu	37	10	34558704	34558704	+	Silent	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	10	34558704	34558704	A	G	SNP	PARD3	ENST00000374789	human	ensembl	74_37	-1	known	silent	c.3309	p.S1103	0.468	NULL	pfam_DUF3534,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PARD3	HGNC	ENSG00000148498				52	0	0	23	11	32.3529
RASGEF1A	0	genome.wustl.edu	37	10	43696165	43696165	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	10	43696165	43696165	C	T	SNP	RASGEF1A	ENST00000395809	human	ensembl	74_37	-1	known	missense	c.631	p.V211M	1.000	superfamily_Ras_GEF_dom,smart_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGEF1A	HGNC	ENSG00000198915				27	0	0	3	5	62.5
RASSF4	0	genome.wustl.edu	37	10	45488730	45488730	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	10	45488730	45488730	C	T	SNP	RASSF4	ENST00000334940	human	ensembl	74_37	+1	known	missense	c.946	p.R316C	1.000	pfscan_SARAH_dom	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SARAH_dom	-	no_errors	RASSF4	HGNC	ENSG00000107551				22	0	0	13	6	31.5789
FAM21C	0	genome.wustl.edu	37	10	46248126	46248126	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	10	46248126	46248126	A	G	SNP	FAM21C	ENST00000374362	human	ensembl	74_37	+1	known	missense	c.1094	p.K365R	1.000	NULL	NULL	-	no_errors	FAM21C	HGNC	ENSG00000172661				158	1	0.628931	72	32	30.7692
NET1	0	genome.wustl.edu	37	10	5498109	5498109	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	10	5498109	5498109	C	T	SNP	NET1	ENST00000355029	human	ensembl	74_37	+1	known	silent	c.1257	p.N419	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	NET1	HGNC	ENSG00000173848				85	0	0	32	8	20
ANK3	0	genome.wustl.edu	37	10	61868760	61868760	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	10	61868760	61868760	G	A	SNP	ANK3	ENST00000280772	human	ensembl	74_37	-1	known	missense	c.3001	p.R1001C	1.000	pfam_ZU5,smart_ZU5,pfscan_ZU5	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150				41	0	0	29	7	19.4444
TET1	0	genome.wustl.edu	37	10	70450958	70450958	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	10	70450958	70450958	C	T	SNP	TET1	ENST00000373644	human	ensembl	74_37	+1	known	missense	c.5798	p.P1933L	0.543	NULL	pfam_Znf_CXXC,pfscan_Znf_CXXC	-	no_errors	TET1	HGNC	ENSG00000138336				76	0	0	51	16	23.8806
CDH23	0	genome.wustl.edu	37	10	73544820	73544820	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	10	73544820	73544820	C	T	SNP	CDH23	ENST00000224721	human	ensembl	74_37	+1	putative	missense	c.5690	p.A1897V	0.999	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH23	HGNC	ENSG00000107736				47	0	0	20	8	28.5714
DNAJB12	0	genome.wustl.edu	37	10	74114622	74114622	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	10	74114622	74114622	T	C	SNP	DNAJB12	ENST00000338820	human	ensembl	74_37	-1	known	missense	c.136	p.I46V	1.000	NULL	pfam_DUF1977_DnaJ-like,pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJB12	HGNC	ENSG00000148719				18	0	0	11	4	26.6667
ECD	0	genome.wustl.edu	37	10	74894376	74894376	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	10	74894376	74894376	C	T	SNP	ECD	ENST00000430082	human	ensembl	74_37	-1	known	missense	c.1999	p.D667N	0.998	NULL	pfam_SGT1	-	no_errors	ECD	HGNC	ENSG00000122882				52	0	0	23	3	11.5385
AGAP5	0	genome.wustl.edu	37	10	75456870	75456870	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	10	75456870	75456870	C	A	SNP	AGAP5	ENST00000374094	human	ensembl	74_37	-1	known	missense	c.275	p.R92M	0.975	NULL	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGAP5	HGNC	ENSG00000172650				63	0	0	28	12	30
SEC24C	0	genome.wustl.edu	37	10	75523277	75523277	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	10	75523277	75523277	C	A	SNP	SEC24C	ENST00000339365	human	ensembl	74_37	+1	known	missense	c.1017	p.N339K	1.000	NULL	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC24C	HGNC	ENSG00000176986				59	0	0	39	12	23.5294
KCNMA1	0	genome.wustl.edu	37	10	78799284	78799284	+	Splice_Site	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	10	78799284	78799284	A	G	SNP	KCNMA1	ENST00000406533	human	ensembl	74_37	-1	known	splice_site	c.1859+2	e15+2	1.000	-	-	-	no_errors	KCNMA1	HGNC	ENSG00000156113				60	0	0	31	6	16.2162
TAF3	0	genome.wustl.edu	37	10	8006409	8006409	+	Silent	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	10	8006409	8006409	T	C	SNP	TAF3	ENST00000344293	human	ensembl	74_37	+1	known	silent	c.936	p.P312	0.998	NULL	pfam_BTP,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,superfamily_Histone-fold,smart_BTP,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	TAF3	HGNC	ENSG00000165632				81	0	0	40	20	33.3333
ZMIZ1	0	genome.wustl.edu	37	10	81053157	81053157	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	10	81053157	81053157	A	C	SNP	ZMIZ1	ENST00000334512	human	ensembl	74_37	+1	known	missense	c.977	p.Y326S	1.000	NULL	pfam_Znf_MIZ,pfscan_Znf_MIZ	-	no_errors	ZMIZ1	HGNC	ENSG00000108175				122	0	0	84	21	20
KIF11	0	genome.wustl.edu	37	10	94392365	94392365	+	Silent	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	10	94392365	94392365	T	C	SNP	KIF11	ENST00000260731	human	ensembl	74_37	+1	known	silent	c.1617	p.N539	0.844	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF11	HGNC	ENSG00000138160				88	0	0	46	3	6.12245
EXOC6	0	genome.wustl.edu	37	10	94733809	94733809	+	Splice_Site	SNP	G	G	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	10	94733809	94733809	G	T	SNP	EXOC6	ENST00000371547	human	ensembl	74_37	+1	known	splice_site	c.1822-1	e19-1	1.000	-	-	-	no_errors	EXOC6	HGNC	ENSG00000138190				46	0	0	16	12	42.8571
MYOF	0	genome.wustl.edu	37	10	95079681	95079681	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	10	95079681	95079681	A	G	SNP	MYOF	ENST00000359263	human	ensembl	74_37	-1	known	missense	c.5546	p.V1849A	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_dom,smart_C2_dom,smart_Peroxin/Ferlin,pfscan_C2_dom	-	no_errors	MYOF	HGNC	ENSG00000138119				72	0	0	41	12	22.6415
OPALIN	0	genome.wustl.edu	37	10	98105764	98105764	+	Silent	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	10	98105764	98105764	A	G	SNP	OPALIN	ENST00000371172	human	ensembl	74_37	-1	known	silent	c.360	p.R120	0.002	NULL	NULL	-	no_errors	OPALIN	HGNC	ENSG00000197430				144	0	0	61	15	19.7368
PIK3AP1	0	genome.wustl.edu	37	10	98408509	98408509	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	10	98408509	98408509	C	T	SNP	PIK3AP1	ENST00000339364	human	ensembl	74_37	-1	known	silent	c.1092	p.A364	0.060	superfamily_Ankyrin_rpt-contain_dom	superfamily_Ankyrin_rpt-contain_dom	-	no_errors	PIK3AP1	HGNC	ENSG00000155629				36	0	0	22	6	21.4286
BIRC2	0	genome.wustl.edu	37	11	102220626	102220626	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	102220626	102220626	C	T	SNP	BIRC2	ENST00000227758	human	ensembl	74_37	+1	known	missense	c.41	p.S14L	0.000	NULL	pfam_BIR,pfam_CARD,superfamily_DEATH-like_dom,smart_BIR,smart_CARD,smart_Znf_RING,pfscan_CARD,pfscan_BIR,pfscan_Znf_RING	-	no_errors	BIRC2	HGNC	ENSG00000110330				80	0	0	66	15	18.5185
MMP12	0	genome.wustl.edu	37	11	102742328	102742328	+	RNA	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	102742328	102742328	T	C	SNP	MMP12	ENST00000326227	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MMP12	HGNC	ENSG00000110347				9	0	0	3	2	40
DDI1	0	genome.wustl.edu	37	11	103907911	103907911	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	103907911	103907911	G	A	SNP	DDI1	ENST00000302259	human	ensembl	74_37	+1	known	missense	c.361	p.A121T	0.000	NULL	pfam_Peptidase_aspartic_DDI1-type,pfam_Ubiquitin_dom,pfam_RVP_2,pfam_Pept_A2A_retrovirus_sg,superfamily_Peptidase_aspartic_dom,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	-	no_errors	DDI1	HGNC	ENSG00000170967				44	0	0	21	15	41.6667
KBTBD3	0	genome.wustl.edu	37	11	105924490	105924490	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	105924490	105924490	T	C	SNP	KBTBD3	ENST00000526793	human	ensembl	74_37	-1	known	missense	c.926	p.Q309R	1.000	pirsf_Kelch-like_gigaxonin	pfam_BACK,pfam_BTB_POZ,pfam_Kelch_1,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KBTBD3	HGNC	ENSG00000182359				78	0	0	42	19	31.1475
CUL5	0	genome.wustl.edu	37	11	107925673	107925673	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	107925673	107925673	C	T	SNP	CUL5	ENST00000393094	human	ensembl	74_37	+1	known	silent	c.771	p.S257	0.997	pfam_Cullin_N,superfamily_Cullin_repeat-like_dom	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL5	HGNC	ENSG00000166266				35	0	0	22	11	33.3333
ATM	0	genome.wustl.edu	37	11	108117798	108117798	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	108117798	108117798	C	T	SNP	ATM	ENST00000278616	human	ensembl	74_37	+1	known	missense	c.1009	p.R337C	1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311				49	0	0	36	9	20
LAYN	0	genome.wustl.edu	37	11	111414815	111414815	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	111414815	111414815	T	C	SNP	LAYN	ENST00000375615	human	ensembl	74_37	+1	known	missense	c.277	p.F93L	0.985	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	LAYN	HGNC	ENSG00000204381				37	0	0	36	6	14.2857
HTR3B	0	genome.wustl.edu	37	11	113802574	113802574	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	113802574	113802574	T	C	SNP	HTR3B	ENST00000260191	human	ensembl	74_37	+1	known	missense	c.353	p.I118T	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Neur_channel,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_5HT3_rcpt_B,prints_5HT3_rcpt,prints_Neur_channel,prints_5HT3_rcpt_A,tigrfam_Neur_channel	-	no_errors	HTR3B	HGNC	ENSG00000149305				80	0	0	54	41	43.1579
NXPE4	0	genome.wustl.edu	37	11	114453246	114453246	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	114453246	114453246	G	A	SNP	NXPE4	ENST00000375478	human	ensembl	74_37	-1	known	silent	c.594	p.G198	0.999	pfam_NXPH/NXPE	pfam_NXPH/NXPE,superfamily_Ig_E-set	-	no_errors	NXPE4	HGNC	ENSG00000137634				70	0	0	42	8	16
TAGLN	0	genome.wustl.edu	37	11	117073731	117073731	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	117073731	117073731	T	C	SNP	TAGLN	ENST00000392951	human	ensembl	74_37	+1	known	missense	c.2	p.M1T	1.000	NULL	pfam_CH-domain,pfam_Calponin_repeat,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain,pfscan_Calponin_repeat,prints_SM22_calponin	-	no_errors	TAGLN	HGNC	ENSG00000149591				34	0	0	22	11	33.3333
TTC36	0	genome.wustl.edu	37	11	118399499	118399499	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	118399499	118399499	C	T	SNP	TTC36	ENST00000302783	human	ensembl	74_37	+1	known	silent	c.300	p.D100	0.927	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC36	HGNC	ENSG00000172425				20	0	0	17	7	29.1667
TREH	0	genome.wustl.edu	37	11	118533631	118533631	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	118533631	118533631	C	T	SNP	TREH	ENST00000264029	human	ensembl	74_37	-1	known	missense	c.382	p.A128T	1.000	pfam_Glyco_hydro_37	pfam_Glyco_hydro_37,superfamily_6-hairpin_glycosidase-like,prints_Glyco_hydro_37	-	no_errors	TREH	HGNC	ENSG00000118094				18	0	0	3	7	70
C2CD2L	0	genome.wustl.edu	37	11	118982005	118982005	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	118982005	118982005	G	T	SNP	C2CD2L	ENST00000336702	human	ensembl	74_37	+1	known	missense	c.831	p.Q277H	0.008	superfamily_C2_dom	superfamily_C2_dom	-	no_errors	C2CD2L	HGNC	ENSG00000172375				188	0	0	157	29	15.5914
OAF	0	genome.wustl.edu	37	11	120096472	120096472	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	120096472	120096472	A	G	SNP	OAF	ENST00000328965	human	ensembl	74_37	+1	known	missense	c.334	p.I112V	1.000	NULL	NULL	-	no_errors	OAF	HGNC	ENSG00000184232				116	0	0	67	39	36.7925
GRIK4	0	genome.wustl.edu	37	11	120690602	120690602	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	120690602	120690602	G	A	SNP	GRIK4	ENST00000527524	human	ensembl	74_37	+1	known	missense	c.484	p.A162T	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK4	HGNC	ENSG00000149403				173	0	0	90	67	42.6752
BLID	0	genome.wustl.edu	37	11	121986495	121986495	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	121986495	121986495	G	A	SNP	BLID	ENST00000560104	human	ensembl	74_37	-1	known	missense	c.136	p.P46S	0.004	NULL	NULL	-	no_errors	BLID	HGNC	ENSG00000259571				129	0	0	71	4	5.33333
UBASH3B	0	genome.wustl.edu	37	11	122659945	122659945	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	122659945	122659945	C	T	SNP	UBASH3B	ENST00000284273	human	ensembl	74_37	+1	known	silent	c.909	p.T303	0.000	pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_His_Pase_superF_clade-1,pfam_SH3_domain,pfam_UBA/Ts_N,superfamily_UBA-like,superfamily_SH3_domain,superfamily_RNA_ligase/cNuc_Pdiesterase,smart_UBA/transl_elong_EF1B_N_euk,smart_SH3_domain,pfscan_SH3_domain,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBASH3B	HGNC	ENSG00000154127				150	0	0	84	55	39.5683
HSPA8	0	genome.wustl.edu	37	11	122928610	122928610	+	Silent	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	122928610	122928610	T	C	SNP	HSPA8	ENST00000534624	human	ensembl	74_37	-1	known	silent	c.1773	p.E591	1.000	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA8	HGNC	ENSG00000109971				83	0	0	65	18	21.6867
OR10G8	0	genome.wustl.edu	37	11	123900482	123900482	+	Silent	SNP	T	T	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	123900482	123900482	T	A	SNP	OR10G8	ENST00000431524	human	ensembl	74_37	+1	known	silent	c.153	p.S51	0.016	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10G8	HGNC	ENSG00000234560				146	0	0	78	14	15.2174
OR8B12	0	genome.wustl.edu	37	11	124413190	124413190	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	124413190	124413190	G	A	SNP	OR8B12	ENST00000306842	human	ensembl	74_37	-1	known	missense	c.361	p.R121C	1.000	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR8B12	HGNC	ENSG00000170953				99	0	0	44	55	55.5556
MUC5B	0	genome.wustl.edu	37	11	1250474	1250474	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	1250474	1250474	C	T	SNP	MUC5B	ENST00000447027	human	ensembl	74_37	+1	known	missense	c.1051	p.R351C	0.000	pfam_TIL_dom,superfamily_TIL_dom	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983				8	0	0	5	4	44.4444
NFRKB	0	genome.wustl.edu	37	11	129754692	129754692	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	129754692	129754692	C	T	SNP	NFRKB	ENST00000524794	human	ensembl	74_37	-1	known	silent	c.765	p.A255	1.000	NULL	NULL	-	no_errors	NFRKB	HGNC	ENSG00000170322				37	0	0	28	9	24.3243
BTBD10	0	genome.wustl.edu	37	11	13435077	13435077	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	13435077	13435077	T	C	SNP	BTBD10	ENST00000278174	human	ensembl	74_37	-1	known	missense	c.808	p.S270G	1.000	superfamily_BTB/POZ_fold,smart_BTB/POZ-like	superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	BTBD10	HGNC	ENSG00000148925				62	0	0	30	23	43.3962
FAR1	0	genome.wustl.edu	37	11	13729476	13729476	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	13729476	13729476	C	T	SNP	FAR1	ENST00000354817	human	ensembl	74_37	+1	known	missense	c.395	p.T132M	1.000	pfam_Male_sterile_NAD-bd,pfam_Epimerase_deHydtase	pfam_Male_sterile_NAD-bd,pfam_FAR,pfam_Epimerase_deHydtase	-	no_errors	FAR1	HGNC	ENSG00000197601				54	0	0	24	14	36.8421
SERGEF	0	genome.wustl.edu	37	11	18028253	18028253	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	18028253	18028253	C	T	SNP	SERGEF	ENST00000265965	human	ensembl	74_37	-1	known	silent	c.237	p.G79	1.000	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,prints_Reg_chr_condens,pfscan_Reg_chr_condens	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,prints_Reg_chr_condens,pfscan_Reg_chr_condens	-	no_errors	SERGEF	HGNC	ENSG00000129158				175	0	0	138	15	9.80392
NAV2	0	genome.wustl.edu	37	11	19970272	19970272	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	19970272	19970272	C	T	SNP	NAV2	ENST00000396087	human	ensembl	74_37	+1	known	missense	c.2360	p.T787M	1.000	NULL	pfam_CH-domain,superfamily_CH-domain,superfamily_P-loop_NTPase,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV2	HGNC	ENSG00000166833				55	0	0	50	10	16.6667
HTATIP2	0	genome.wustl.edu	37	11	20385903	20385903	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	20385903	20385903	G	A	SNP	HTATIP2	ENST00000419348	human	ensembl	74_37	+1	known	silent	c.222	p.E74	0.039	pfam_Semialdehyde_DH_NAD-bd	pfam_Semialdehyde_DH_NAD-bd	-	no_errors	HTATIP2	HGNC	ENSG00000109854				73	0	0	40	11	21.5686
FBXO3	0	genome.wustl.edu	37	11	33772171	33772171	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	33772171	33772171	C	T	SNP	FBXO3	ENST00000265651	human	ensembl	74_37	-1	known	silent	c.846	p.G282	1.000	superfamily_ApaG_domain,pfscan_ApaG_domain	pfam_ApaG_domain,pfam_F-box_dom,superfamily_ApaG_domain,superfamily_F-box_dom,smart_F-box_dom,smart_SMI1/KNR4_like_dom,pfscan_ApaG_domain,pfscan_F-box_dom	-	no_errors	FBXO3	HGNC	ENSG00000110429				62	0	0	20	16	44.4444
RAG1	0	genome.wustl.edu	37	11	36595732	36595732	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	36595732	36595732	G	A	SNP	RAG1	ENST00000299440	human	ensembl	74_37	+1	known	missense	c.878	p.C293Y	1.000	smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_VDJ_recomb-activ_1,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RAG1	HGNC	ENSG00000166349				83	0	0	43	32	42.6667
NUP98	0	genome.wustl.edu	37	11	3721906	3721906	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	3721906	3721906	C	T	SNP	NUP98	ENST00000324932	human	ensembl	74_37	-1	known	missense	c.3676	p.V1226I	1.000	NULL	pfam_Nup96,pfam_Peptidase_S59,superfamily_Peptidase_S59	-	no_errors	NUP98	HGNC	ENSG00000110713				60	0	0	43	12	21.8182
API5	0	genome.wustl.edu	37	11	43356827	43356827	+	Splice_Site	SNP	G	G	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	43356827	43356827	G	T	SNP	API5	ENST00000531273	human	ensembl	74_37	+1	known	splice_site	c.1279-1	e12-1	1.000	-	-	-	no_errors	API5	HGNC	ENSG00000166181				66	0	0	33	24	42.1053
ALX4	0	genome.wustl.edu	37	11	44289061	44289061	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	44289061	44289061	C	T	SNP	ALX4	ENST00000329255	human	ensembl	74_37	-1	known	missense	c.889	p.A297T	0.999	NULL	pfam_Homeobox_dom,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_OAR_dom,pfscan_Homeobox_dom	-	no_errors	ALX4	HGNC	ENSG00000052850				50	0	0	38	6	13.6364
ALX4	0	genome.wustl.edu	37	11	44297062	44297062	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	44297062	44297062	C	T	SNP	ALX4	ENST00000329255	human	ensembl	74_37	-1	known	missense	c.613	p.A205T	0.984	superfamily_Homeodomain-like	pfam_Homeobox_dom,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_OAR_dom,pfscan_Homeobox_dom	-	no_errors	ALX4	HGNC	ENSG00000052850				136	0	0	87	30	25.641
ZNF408	0	genome.wustl.edu	37	11	46727164	46727164	+	Silent	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	46727164	46727164	C	A	SNP	ZNF408	ENST00000311764	human	ensembl	74_37	+1	known	silent	c.1914	p.P638	0.007	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF408	HGNC	ENSG00000175213				31	0	0	18	11	37.931
ACP2	0	genome.wustl.edu	37	11	47264672	47264672	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	47264672	47264672	C	T	SNP	ACP2	ENST00000256997	human	ensembl	74_37	-1	known	missense	c.859	p.D287N	1.000	pfam_His_Pase_superF_clade-2	pfam_His_Pase_superF_clade-2	-	no_errors	ACP2	HGNC	ENSG00000134575				55	0	0	38	28	42.4242
MADD	0	genome.wustl.edu	37	11	47307054	47307054	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	47307054	47307054	G	A	SNP	MADD	ENST00000311027	human	ensembl	74_37	+1	known	missense	c.2464	p.A822T	1.000	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	MADD	HGNC	ENSG00000110514				151	0	0	102	35	25.5474
KBTBD4	0	genome.wustl.edu	37	11	47599015	47599015	+	Silent	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	47599015	47599015	A	G	SNP	KBTBD4	ENST00000430070	human	ensembl	74_37	-1	known	silent	c.585	p.N195	1.000	pfam_BACK,smart_BACK	pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	KBTBD4	HGNC	ENSG00000123444				79	0	0	70	20	22.2222
FNBP4	0	genome.wustl.edu	37	11	47744591	47744591	+	Silent	SNP	A	A	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	47744591	47744591	A	T	SNP	FNBP4	ENST00000263773	human	ensembl	74_37	-1	known	silent	c.2742	p.P914	0.174	NULL	pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	FNBP4	HGNC	ENSG00000109920				15	0	0	8	5	38.4615
NUP160	0	genome.wustl.edu	37	11	47859139	47859139	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	47859139	47859139	A	G	SNP	NUP160	ENST00000378460	human	ensembl	74_37	-1	known	missense	c.785	p.V262A	1.000	pfam_Nucleoporin_Nup160	pfam_Nucleoporin_Nup160	-	no_errors	NUP160	HGNC	ENSG00000030066				112	0	0	80	18	18.3673
PTPRJ	0	genome.wustl.edu	37	11	48161113	48161113	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	48161113	48161113	C	A	SNP	PTPRJ	ENST00000418331	human	ensembl	74_37	+1	known	missense	c.2228	p.P743H	0.978	superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRJ	HGNC	ENSG00000149177				44	0	0	30	8	21.0526
OR4S1	0	genome.wustl.edu	37	11	48327840	48327840	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	48327840	48327840	G	A	SNP	OR4S1	ENST00000319988	human	ensembl	74_37	+1	known	silent	c.66	p.Q22	0.687	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4S1	HGNC	ENSG00000176555				226	0	0	154	40	20.6186
OR52J3	0	genome.wustl.edu	37	11	5068158	5068158	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	5068158	5068158	G	A	SNP	OR52J3	ENST00000380370	human	ensembl	74_37	+1	known	missense	c.403	p.A135T	0.095	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52J3	HGNC	ENSG00000205495				51	0	0	35	12	25.5319
OR4C46	0	genome.wustl.edu	37	11	51515845	51515845	+	Silent	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	51515845	51515845	T	C	SNP	OR4C46	ENST00000328188	human	ensembl	74_37	+1	known	silent	c.564	p.T188	0.975	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4C46	HGNC	ENSG00000185926				117	0	0	48	34	41.4634
OR51B2	0	genome.wustl.edu	37	11	5344589	5344589	+	Silent	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	5344589	5344589	T	C	SNP	OR51B2	ENST00000328813	human	ensembl	74_37	-1	known	silent	c.939	p.*313	0.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51B2	HGNC	ENSG00000184881				40	0	0	33	11	25
OR8K5	0	genome.wustl.edu	37	11	55927697	55927697	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	55927697	55927697	C	T	SNP	OR8K5	ENST00000313447	human	ensembl	74_37	-1	known	missense	c.97	p.V33I	0.012	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8K5	HGNC	ENSG00000181752				98	0	0	61	37	37.7551
OR5T2	0	genome.wustl.edu	37	11	56000210	56000210	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	56000210	56000210	C	A	SNP	OR5T2	ENST00000313264	human	ensembl	74_37	-1	known	missense	c.452	p.C151F	0.178	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5T2	HGNC	ENSG00000181718				132	0	0	50	42	45.6522
P2RX3	0	genome.wustl.edu	37	11	57117371	57117371	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	57117371	57117371	C	T	SNP	P2RX3	ENST00000263314	human	ensembl	74_37	+1	known	missense	c.704	p.T235M	1.000	pfam_P2X_purnocptor,prints_P2X_purnocptor,tigrfam_P2X_purnocptor	pfam_P2X_purnocptor,prints_P2X3_purnocptor,prints_P2X_purnocptor,tigrfam_P2X_purnocptor	-	no_errors	P2RX3	HGNC	ENSG00000109991				35	0	0	17	8	32
TIMM10	0	genome.wustl.edu	37	11	57296267	57296267	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	57296267	57296267	C	A	SNP	TIMM10	ENST00000257245	human	ensembl	74_37	-1	known	missense	c.196	p.G66C	1.000	pfam_Tim10/DDP_fam_Znf,superfamily_Tim10/DDP_fam_Znf	pfam_Tim10/DDP_fam_Znf,superfamily_Tim10/DDP_fam_Znf	-	no_errors	TIMM10	HGNC	ENSG00000134809				74	0	0	49	10	16.9492
TRIM22	0	genome.wustl.edu	37	11	5730360	5730360	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	5730360	5730360	C	T	SNP	TRIM22	ENST00000379965	human	ensembl	74_37	+1	known	missense	c.979	p.R327C	0.000	superfamily_ConA-like_lec_gl_sf,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM22	HGNC	ENSG00000132274				123	0	0	60	34	36.1702
OR52E6	0	genome.wustl.edu	37	11	5862840	5862840	+	Silent	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	5862840	5862840	A	G	SNP	OR52E6	ENST00000379946	human	ensembl	74_37	-1	known	silent	c.300	p.F100	0.008	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52E6	HGNC	ENSG00000205409				157	0	0	113	35	23.6486
MPEG1	0	genome.wustl.edu	37	11	58979300	58979300	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	58979300	58979300	A	G	SNP	MPEG1	ENST00000361050	human	ensembl	74_37	-1	known	missense	c.1039	p.Y347H	1.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	MPEG1	HGNC	ENSG00000197629				82	0	0	63	17	21.25
OR56A4	0	genome.wustl.edu	37	11	6023400	6023400	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	6023400	6023400	C	T	SNP	OR56A4	ENST00000330728	human	ensembl	74_37	-1	known	missense	c.979	p.V327I	0.030	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR56A4	HGNC	ENSG00000183389				40	0	0	26	16	38.0952
MS4A13	0	genome.wustl.edu	37	11	60296882	60296882	+	Silent	SNP	T	T	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	60296882	60296882	T	G	SNP	MS4A13	ENST00000378186	human	ensembl	74_37	+1	known	silent	c.351	p.G117	0.000	pfam_CD20-like	pfam_CD20-like	-	no_errors	MS4A13	HGNC	ENSG00000204979				66	0	0	32	10	23.8095
SLC22A8	0	genome.wustl.edu	37	11	62766431	62766431	+	Silent	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	62766431	62766431	A	G	SNP	SLC22A8	ENST00000336232	human	ensembl	74_37	-1	known	silent	c.723	p.T241	0.024	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A8	HGNC	ENSG00000149452				76	0	0	32	26	44.8276
SLC22A11	0	genome.wustl.edu	37	11	64323478	64323478	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	64323478	64323478	T	C	SNP	SLC22A11	ENST00000301891	human	ensembl	74_37	+1	known	missense	c.7	p.F3L	0.636	NULL	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A11	HGNC	ENSG00000168065				45	0	0	18	17	48.5714
SCYL1	0	genome.wustl.edu	37	11	65298235	65298235	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	65298235	65298235	G	A	SNP	SCYL1	ENST00000270176	human	ensembl	74_37	+1	known	missense	c.985	p.V329I	0.998	superfamily_ARM-type_fold	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,pfscan_Prot_kinase_dom	-	no_errors	SCYL1	HGNC	ENSG00000142186				41	0	0	33	12	26.6667
SNX32	0	genome.wustl.edu	37	11	65618601	65618601	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	65618601	65618601	C	T	SNP	SNX32	ENST00000308342	human	ensembl	74_37	+1	known	missense	c.679	p.R227W	0.000	pfam_Vps5_C,pirsf_Snx5_Snx6	pfam_Vps5_C,pfam_Phox,superfamily_Phox,pirsf_Snx5_Snx6,pfscan_Phox	-	no_errors	SNX32	HGNC	ENSG00000172803				118	1	0.840336	78	20	20.4082
CPT1A	0	genome.wustl.edu	37	11	68542897	68542897	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	68542897	68542897	C	T	SNP	CPT1A	ENST00000265641	human	ensembl	74_37	-1	known	missense	c.1462	p.V488I	0.846	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CPT1A	HGNC	ENSG00000110090				96	0	0	58	8	12.1212
ANO1	0	genome.wustl.edu	37	11	69995855	69995855	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	69995855	69995855	G	A	SNP	ANO1	ENST00000355303	human	ensembl	74_37	+1	known	missense	c.1298	p.R433Q	1.000	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO1	HGNC	ENSG00000131620				24	0	0	13	5	27.7778
ANO1	0	genome.wustl.edu	37	11	70017068	70017068	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	70017068	70017068	T	G	SNP	ANO1	ENST00000355303	human	ensembl	74_37	+1	known	missense	c.2273	p.I758S	1.000	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO1	HGNC	ENSG00000131620				26	0	0	13	9	40.9091
SERPINH1	0	genome.wustl.edu	37	11	75277741	75277741	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	75277741	75277741	G	A	SNP	SERPINH1	ENST00000358171	human	ensembl	74_37	+1	known	missense	c.347	p.R116H	0.099	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINH1	HGNC	ENSG00000149257				14	0	0	11	3	21.4286
UVRAG	0	genome.wustl.edu	37	11	75776823	75776823	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	75776823	75776823	T	G	SNP	UVRAG	ENST00000356136	human	ensembl	74_37	+1	known	missense	c.1296	p.N432K	0.988	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom	-	no_errors	UVRAG	HGNC	ENSG00000198382				72	0	0	61	14	18.6667
CYB5R2	0	genome.wustl.edu	37	11	7694000	7694000	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	7694000	7694000	C	T	SNP	CYB5R2	ENST00000299498	human	ensembl	74_37	-1	known	silent	c.57	p.P19	0.381	superfamily_Riboflavin_synthase-like_b-brl	pfam_OxRdtase_FAD-bd_dom,pfam_OxRdtase_FAD/NAD-bd,superfamily_Riboflavin_synthase-like_b-brl,prints_NADH-Cyt_B5_reductase,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase	-	no_errors	CYB5R2	HGNC	ENSG00000166394				52	0	0	31	8	20.5128
FAT3	0	genome.wustl.edu	37	11	92088561	92088561	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	92088561	92088561	G	A	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	missense	c.3283	p.D1095N	0.999	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323				61	0	0	36	15	29.4118
FAT3	0	genome.wustl.edu	37	11	92533874	92533874	+	Silent	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	92533874	92533874	A	G	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	silent	c.7695	p.E2565	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323				37	0	0	24	7	22.5806
PIWIL4	0	genome.wustl.edu	37	11	94340675	94340675	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	94340675	94340675	G	A	SNP	PIWIL4	ENST00000299001	human	ensembl	74_37	+1	known	missense	c.1709	p.C570Y	1.000	pfam_Piwi,superfamily_RNaseH-like_dom,smart_Piwi,pfscan_Piwi	pfam_Piwi,pfam_PAZ_dom,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	PIWIL4	HGNC	ENSG00000134627				50	0	0	26	11	29.7297
CWC15	0	genome.wustl.edu	37	11	94696586	94696586	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	94696586	94696586	T	A	SNP	CWC15	ENST00000279839	human	ensembl	74_37	-1	known	missense	c.651	p.E217D	1.000	pfam_Cwf_Cwc_15	pfam_Cwf_Cwc_15	-	no_errors	CWC15	HGNC	ENSG00000150316				10	0	0	3	7	70
NR1H4	0	genome.wustl.edu	37	12	100957089	100957089	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	100957089	100957089	T	C	SNP	NR1H4	ENST00000551379	human	ensembl	74_37	+1	known	missense	c.1283	p.V428A	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_ThyrH_rcpt	-	no_errors	NR1H4	HGNC	ENSG00000012504				60	0	0	36	16	30.7692
GAS2L3	0	genome.wustl.edu	37	12	101005888	101005888	+	Silent	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	101005888	101005888	T	C	SNP	GAS2L3	ENST00000266754	human	ensembl	74_37	+1	known	silent	c.414	p.D138	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_GAS2_dom,pfam_CH-domain,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_GAS2_dom,pfscan_CH-domain	-	no_errors	GAS2L3	HGNC	ENSG00000139354				126	0	0	63	21	25
RIC8B	0	genome.wustl.edu	37	12	107254141	107254141	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	107254141	107254141	T	G	SNP	RIC8B	ENST00000392837	human	ensembl	74_37	+1	known	missense	c.1402	p.S468A	1.000	pfam_Gua_nucleotide_exch_fac_Ric8	pfam_Gua_nucleotide_exch_fac_Ric8,superfamily_ARM-type_fold,prints_Synembryn	-	no_errors	RIC8B	HGNC	ENSG00000111785				55	0	0	25	13	34.2105
ISCU	0	genome.wustl.edu	37	12	108958107	108958107	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	108958107	108958107	C	T	SNP	ISCU	ENST00000311893	human	ensembl	74_37	+1	known	missense	c.167	p.S56F	0.980	pfam_NIF_FeS_clus_asmbl_NifU_N,tigrfam_ISC_FeS_clus_asmbl_IscU	pfam_NIF_FeS_clus_asmbl_NifU_N,tigrfam_ISC_FeS_clus_asmbl_IscU	-	no_errors	ISCU	HGNC	ENSG00000136003				65	0	0	28	10	26.3158
TRPV4	0	genome.wustl.edu	37	12	110226433	110226433	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	110226433	110226433	G	A	SNP	TRPV4	ENST00000261740	human	ensembl	74_37	-1	known	silent	c.1980	p.C660	1.000	pfam_Ion_trans_dom,prints_TRPV4_channel,tigrfam_TRP_channel	pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV1-4_channel,prints_TRPV4_channel,tigrfam_TRP_channel	-	no_errors	TRPV4	HGNC	ENSG00000111199				90	0	0	47	18	27.6923
VPS29	0	genome.wustl.edu	37	12	110933822	110933822	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	110933822	110933822	C	T	SNP	VPS29	ENST00000549578	human	ensembl	74_37	-1	known	missense	c.190	p.D64N	1.000	tigrfam_Phosphodiesterase_MJ0936	tigrfam_Phosphodiesterase_MJ0936	-	no_errors	VPS29	HGNC	ENSG00000111237				86	0	0	36	13	26.5306
PLBD2	0	genome.wustl.edu	37	12	113825620	113825620	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	113825620	113825620	C	A	SNP	PLBD2	ENST00000280800	human	ensembl	74_37	+1	known	missense	c.1511	p.A504D	1.000	pfam_PLipase_B-like	pfam_PLipase_B-like	-	no_errors	PLBD2	HGNC	ENSG00000151176				243	1	0.409836	126	43	25.4438
CCDC60	0	genome.wustl.edu	37	12	119773072	119773072	+	Splice_Site	SNP	G	G	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	119773072	119773072	G	C	SNP	CCDC60	ENST00000327554	human	ensembl	74_37	+1	known	splice_site	c.90+1	e1+1	1.000	-	-	-	no_errors	CCDC60	HGNC	ENSG00000183273				64	0	0	26	18	40.9091
UNC119B	0	genome.wustl.edu	37	12	121154782	121154782	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	121154782	121154782	A	G	SNP	UNC119B	ENST00000344651	human	ensembl	74_37	+1	known	missense	c.580	p.I194V	1.000	pfam_GMP_PDE_delta,superfamily_Ig_E-set	pfam_GMP_PDE_delta,superfamily_Ig_E-set	-	no_errors	UNC119B	HGNC	ENSG00000175970				123	0	0	64	17	20.9877
B3GNT4	0	genome.wustl.edu	37	12	122691078	122691078	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	122691078	122691078	C	T	SNP	B3GNT4	ENST00000324189	human	ensembl	74_37	+1	known	missense	c.280	p.R94C	1.000	NULL	pfam_Glyco_trans_31,pfam_Fringe-like	-	no_errors	B3GNT4	HGNC	ENSG00000176383				249	0	0	148	50	25.2525
HCAR2	0	genome.wustl.edu	37	12	123187233	123187233	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	123187233	123187233	G	A	SNP	HCAR2	ENST00000328880	human	ensembl	74_37	-1	known	missense	c.598	p.P200S	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	HCAR2	HGNC	ENSG00000182782				59	0	0	42	21	33.3333
SBNO1	0	genome.wustl.edu	37	12	123810084	123810084	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	123810084	123810084	G	A	SNP	SBNO1	ENST00000420886	human	ensembl	74_37	-1	known	silent	c.1938	p.G646	0.153	NULL	pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Prismane-like	-	no_errors	SBNO1	HGNC	ENSG00000139697				191	0	0	84	42	33.3333
DDX55	0	genome.wustl.edu	37	12	124092063	124092063	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	124092063	124092063	G	A	SNP	DDX55	ENST00000238146	human	ensembl	74_37	+1	known	missense	c.331	p.E111K	0.970	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX55	HGNC	ENSG00000111364				60	0	0	40	15	27.2727
EP400	0	genome.wustl.edu	37	12	132446241	132446241	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	132446241	132446241	G	A	SNP	EP400	ENST00000333577	human	ensembl	74_37	+1	known	silent	c.1077	p.P359	1.000	NULL	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495				46	0	0	28	4	12.5
P2RX2	0	genome.wustl.edu	37	12	133197638	133197638	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	133197638	133197638	G	A	SNP	P2RX2	ENST00000343948	human	ensembl	74_37	+1	known	missense	c.826	p.A276T	0.164	pfam_P2X_purnocptor,tigrfam_P2X_purnocptor	pfam_P2X_purnocptor,prints_P2X2_purnocptor,prints_P2X_purnocptor,tigrfam_P2X_purnocptor	-	no_errors	P2RX2	HGNC	ENSG00000187848				97	0	0	53	16	23.1884
PLBD1	0	genome.wustl.edu	37	12	14664529	14664529	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	14664529	14664529	G	A	SNP	PLBD1	ENST00000240617	human	ensembl	74_37	-1	known	silent	c.961	p.L321	0.562	pfam_PLipase_B-like	pfam_PLipase_B-like	-	no_errors	PLBD1	HGNC	ENSG00000121316				129	0	0	60	18	23.0769
ART4	0	genome.wustl.edu	37	12	14993873	14993873	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	14993873	14993873	G	T	SNP	ART4	ENST00000228936	human	ensembl	74_37	-1	known	missense	c.359	p.A120D	0.993	pfam_ART,prints_ART	pfam_ART,prints_ART	-	no_errors	ART4	HGNC	ENSG00000111339				132	0	0	62	28	31.1111
CMAS	0	genome.wustl.edu	37	12	22208418	22208418	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	22208418	22208418	A	G	SNP	CMAS	ENST00000229329	human	ensembl	74_37	+1	known	missense	c.433	p.T145A	1.000	pfam_Cytidylyl_trans	pfam_Cytidylyl_trans,superfamily_HAD-like_dom	-	no_errors	CMAS	HGNC	ENSG00000111726				32	0	0	28	4	12.5
KRAS	0	genome.wustl.edu	37	12	25398281	25398281	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	25398281	25398281	C	T	SNP	KRAS	ENST00000256078	human	ensembl	74_37	-1	known	missense	c.38	p.G13D	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	KRAS	HGNC	ENSG00000133703				21	0	0	8	5	38.4615
CACNA1C-AS1	0	genome.wustl.edu	37	12	2787051	2787051	+	RNA	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	2787051	2787051	G	A	SNP	CACNA1C-AS1	ENST00000501371	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CACNA1C-AS1	HGNC	ENSG00000246627				51	0	0	26	3	10.3448
TWF1	0	genome.wustl.edu	37	12	44191543	44191543	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	44191543	44191543	A	T	SNP	TWF1	ENST00000325127	human	ensembl	74_37	-1	known	missense	c.679	p.L227M	0.934	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin	-	no_errors	TWF1	HGNC	ENSG00000151239				65	0	0	34	14	29.1667
NELL2	0	genome.wustl.edu	37	12	44915909	44915909	+	Silent	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	44915909	44915909	T	C	SNP	NELL2	ENST00000437801	human	ensembl	74_37	-1	known	silent	c.2199	p.T733	0.240	smart_VWF_C,pfscan_VWF_C	pfam_EGF-like_Ca-bd_dom,pfam_VWF_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_VWC_out,smart_VWF_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	NELL2	HGNC	ENSG00000184613				67	0	0	32	6	15.7895
GPD1	0	genome.wustl.edu	37	12	50498517	50498517	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	50498517	50498517	A	G	SNP	GPD1	ENST00000301149	human	ensembl	74_37	+1	known	missense	c.202	p.K68E	1.000	pfam_G3P_DH_NAD-dep_N,pirsf_G3P_DH_NAD-dep,tigrfam_G3P_DH_NAD-dep_euk	pfam_G3P_DH_NAD-dep_N,pfam_G3P_DH_NAD-dep_C,superfamily_6-PGluconate_DH_C-like,pirsf_G3P_DH_NAD-dep,prints_G3P_DH_NAD-dep,tigrfam_G3P_DH_NAD-dep_euk	-	no_errors	GPD1	HGNC	ENSG00000167588				88	0	0	58	21	26.5823
SCN8A	0	genome.wustl.edu	37	12	52094954	52094954	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	52094954	52094954	C	T	SNP	SCN8A	ENST00000354534	human	ensembl	74_37	+1	known	silent	c.955	p.L319	0.990	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,prints_Na_channel_a8su,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN8A	HGNC	ENSG00000196876				54	0	0	26	11	29.7297
GDF11	0	genome.wustl.edu	37	12	56143376	56143376	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	56143376	56143376	C	T	SNP	GDF11	ENST00000257868	human	ensembl	74_37	+1	known	missense	c.934	p.R312C	1.000	pfam_TGF-b_C	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	GDF11	HGNC	ENSG00000135414				103	0	0	45	21	31.8182
SUOX	0	genome.wustl.edu	37	12	56398288	56398288	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	56398288	56398288	T	C	SNP	SUOX	ENST00000266971	human	ensembl	74_37	+1	known	missense	c.1115	p.V372A	1.000	pfam_OxRdtase_Mopterin-bd_dom,superfamily_OxRdtase_Mopterin-bd_dom	pfam_OxRdtase_Mopterin-bd_dom,pfam_MoCF_OxRdtse_dimer,pfam_Cyt_B5-like_heme/steroid-bd,superfamily_OxRdtase_Mopterin-bd_dom,superfamily_Ig_E-set,superfamily_Cyt_B5-like_heme/steroid-bd,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Mopterin_OxRdtase_euk,prints_Cyt_B5-like_heme/steroid-bd	-	no_errors	SUOX	HGNC	ENSG00000139531				27	0	0	15	7	31.8182
ERBB3	0	genome.wustl.edu	37	12	56481660	56481660	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	56481660	56481660	C	T	SNP	ERBB3	ENST00000267101	human	ensembl	74_37	+1	known	missense	c.695	p.A232V	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Furin-like_Cys-rich_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Furin-like_Cys-rich_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB3	HGNC	ENSG00000065361				111	0	0	43	9	17.3077
SMARCC2	0	genome.wustl.edu	37	12	56563427	56563427	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	56563427	56563427	C	A	SNP	SMARCC2	ENST00000267064	human	ensembl	74_37	-1	known	missense	c.2508	p.K836N	1.000	superfamily_Chromodomain-like	pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,superfamily_BRCT_dom,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_SANT/Myb,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	SMARCC2	HGNC	ENSG00000139613				35	0	0	15	7	31.8182
STAT2	0	genome.wustl.edu	37	12	56749230	56749230	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	56749230	56749230	C	T	SNP	STAT2	ENST00000314128	human	ensembl	74_37	-1	known	missense	c.468	p.M156I	0.999	pfam_STAT_TF_alpha,superfamily_STAT_TF_coiled-coil	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_STAT2_C,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT2	HGNC	ENSG00000170581				315	0	0	159	61	27.7273
INHBE	0	genome.wustl.edu	37	12	57849901	57849901	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	57849901	57849901	T	C	SNP	INHBE	ENST00000266646	human	ensembl	74_37	+1	known	missense	c.323	p.L108P	0.027	pfam_TGF-b_N	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_betaC,prints_Inhibin_asu	-	no_errors	INHBE	HGNC	ENSG00000139269				274	0	0	126	43	25.4438
GLI1	0	genome.wustl.edu	37	12	57864396	57864396	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	57864396	57864396	G	A	SNP	GLI1	ENST00000228682	human	ensembl	74_37	+1	known	missense	c.1873	p.E625K	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI1	HGNC	ENSG00000111087				33	0	0	31	5	13.8889
MBD6	0	genome.wustl.edu	37	12	57920381	57920381	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	57920381	57920381	C	A	SNP	MBD6	ENST00000355673	human	ensembl	74_37	+1	known	missense	c.1453	p.P485T	1.000	NULL	superfamily_DNA-bd_dom,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MBD6	HGNC	ENSG00000166987				55	0	0	43	14	24.5614
ENSG00000224713	0	genome.wustl.edu	37	12	58007438	58007438	+	RNA	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	58007438	58007438	C	T	SNP	ENSG00000224713	ENST00000356672	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AC025165.8	Clone_based_vega_gene	ENSG00000224713				35	0	0	16	11	40.7407
SRGAP1	0	genome.wustl.edu	37	12	64491077	64491077	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	64491077	64491077	G	A	SNP	SRGAP1	ENST00000355086	human	ensembl	74_37	+1	known	missense	c.1735	p.V579I	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_FCH_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Fuc/Ara_isomerase_C,smart_FCH_dom,smart_RhoGAP_dom,smart_SH3_domain,pfscan_FCH_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	SRGAP1	HGNC	ENSG00000196935				53	0	0	30	16	34.7826
XPOT	0	genome.wustl.edu	37	12	64812728	64812728	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	64812728	64812728	A	G	SNP	XPOT	ENST00000332707	human	ensembl	74_37	+1	known	missense	c.343	p.T115A	1.000	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	XPOT	HGNC	ENSG00000184575				76	0	0	60	4	6.25
XPOT	0	genome.wustl.edu	37	12	64812733	64812733	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	64812733	64812733	G	A	SNP	XPOT	ENST00000332707	human	ensembl	74_37	+1	known	silent	c.348	p.E116	0.939	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	XPOT	HGNC	ENSG00000184575				80	0	0	61	5	7.57576
XPOT	0	genome.wustl.edu	37	12	64812808	64812808	+	Silent	SNP	C	C	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	64812808	64812808	C	G	SNP	XPOT	ENST00000332707	human	ensembl	74_37	+1	known	silent	c.423	p.L141	0.776	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	XPOT	HGNC	ENSG00000184575				105	0	0	63	6	8.69565
TMBIM4	0	genome.wustl.edu	37	12	66547166	66547166	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	66547166	66547166	T	C	SNP	TMBIM4	ENST00000358230	human	ensembl	74_37	-1	known	missense	c.160	p.T54A	0.000	pfam_Bax_inhibitor_1-related	pfam_Bax_inhibitor_1-related	-	no_errors	TMBIM4	HGNC	ENSG00000155957				65	0	0	34	10	22.7273
CHD4	0	genome.wustl.edu	37	12	6687040	6687040	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	6687040	6687040	A	G	SNP	CHD4	ENST00000309577	human	ensembl	74_37	-1	known	missense	c.5356	p.Y1786H	1.000	pfam_CHD_C2	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642				112	0	0	61	17	21.7949
ACRBP	0	genome.wustl.edu	37	12	6749557	6749557	+	Silent	SNP	G	G	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	6749557	6749557	G	T	SNP	ACRBP	ENST00000229243	human	ensembl	74_37	-1	known	silent	c.1209	p.P403	0.005	NULL	pfam_Proacrosin-bd	-	no_errors	ACRBP	HGNC	ENSG00000111644				31	0	0	11	5	31.25
USP5	0	genome.wustl.edu	37	12	6964649	6964649	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	6964649	6964649	G	A	SNP	USP5	ENST00000229268	human	ensembl	74_37	+1	known	missense	c.196	p.G66S	1.000	pirsf_Ubiquitinyl_hydrolase	pfam_Peptidase_C19/C67,pfam_UBA/Ts_N,pfam_Znf_UBP,superfamily_UBA-like,smart_Znf_UBP,smart_UBA/transl_elong_EF1B_N_euk,pirsf_Ubiquitinyl_hydrolase,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP5	HGNC	ENSG00000111667				136	1	0.729927	69	24	25.8065
PHB2	0	genome.wustl.edu	37	12	7077645	7077645	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	7077645	7077645	T	C	SNP	PHB2	ENST00000399433	human	ensembl	74_37	-1	known	missense	c.406	p.I136V	1.000	pfam_Band_7,smart_Band_7,prints_Prohibitin	pfam_Band_7,smart_Band_7,prints_Prohibitin	-	no_errors	PHB2	HGNC	ENSG00000215021				29	0	0	13	5	27.7778
PTPRR	0	genome.wustl.edu	37	12	71139707	71139707	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	71139707	71139707	T	C	SNP	PTPRR	ENST00000283228	human	ensembl	74_37	-1	known	missense	c.898	p.N300D	0.979	pirsf_Tyr_Pase_rcpt_R/non-rcpt_5	pirsf_Tyr_Pase_rcpt_R/non-rcpt_5,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_KIM-con,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRR	HGNC	ENSG00000153233				60	0	0	33	10	23.2558
LGR5	0	genome.wustl.edu	37	12	71977612	71977612	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	71977612	71977612	G	A	SNP	LGR5	ENST00000266674	human	ensembl	74_37	+1	known	missense	c.1822	p.V608I	0.828	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_Leu-rich_rpt,pfam_GPCR_Rhodpsn,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	LGR5	HGNC	ENSG00000139292				63	0	0	33	13	28.2609
TRHDE	0	genome.wustl.edu	37	12	72667257	72667257	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	72667257	72667257	G	A	SNP	TRHDE	ENST00000261180	human	ensembl	74_37	+1	known	silent	c.699	p.L233	1.000	pfam_Peptidase_M1_N	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	TRHDE	HGNC	ENSG00000072657				75	0	0	44	22	33.3333
NAP1L1	0	genome.wustl.edu	37	12	76449858	76449858	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	76449858	76449858	C	T	SNP	NAP1L1	ENST00000261182	human	ensembl	74_37	-1	known	nonsense	c.513	p.W171*	1.000	pfam_NAP_family	pfam_NAP_family	-	no_errors	NAP1L1	HGNC	ENSG00000187109				76	0	0	23	11	32.3529
MYF5	0	genome.wustl.edu	37	12	81110900	81110900	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	81110900	81110900	T	A	SNP	MYF5	ENST00000228644	human	ensembl	74_37	+1	known	missense	c.58	p.C20S	1.000	pfam_Basic,smart_Basic	pfam_Basic,pfam_Myf5,pfam_bHLH_dom,superfamily_bHLH_dom,smart_Basic,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MYF5	HGNC	ENSG00000111049				27	0	0	13	7	35
CLEC4A	0	genome.wustl.edu	37	12	8281918	8281918	+	Silent	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	8281918	8281918	T	C	SNP	CLEC4A	ENST00000229332	human	ensembl	74_37	+1	known	silent	c.258	p.H86	0.000	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	CLEC4A	HGNC	ENSG00000111729				62	0	0	22	5	18.5185
CEP290	0	genome.wustl.edu	37	12	88472895	88472895	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	88472895	88472895	C	T	SNP	CEP290	ENST00000309041	human	ensembl	74_37	-1	known	missense	c.5344	p.V1782I	1.000	NULL	NULL	-	no_errors	CEP290	HGNC	ENSG00000198707				30	0	0	16	5	23.8095
NR2C1	0	genome.wustl.edu	37	12	95442864	95442864	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	95442864	95442864	C	T	SNP	NR2C1	ENST00000333003	human	ensembl	74_37	-1	known	missense	c.1111	p.D371N	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt	-	no_errors	NR2C1	HGNC	ENSG00000120798				81	0	0	36	13	26.5306
CCDC38	0	genome.wustl.edu	37	12	96292234	96292234	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	96292234	96292234	C	A	SNP	CCDC38	ENST00000344280	human	ensembl	74_37	-1	known	missense	c.543	p.Q181H	0.988	NULL	NULL	-	no_errors	CCDC38	HGNC	ENSG00000165972				127	1	0.78125	70	21	23.0769
APAF1	0	genome.wustl.edu	37	12	99076985	99076985	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	99076985	99076985	G	A	SNP	APAF1	ENST00000551964	human	ensembl	74_37	+1	known	missense	c.2111	p.C704Y	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Apoptotic_pept-activating_1,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_NB-ARC,pfam_CARD,superfamily_WD40_repeat_dom,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pirsf_Apoptotic_pept-activating_1,pfscan_CARD,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Disease_R,prints_G-protein_beta_WD-40_rep	-	no_errors	APAF1	HGNC	ENSG00000120868				90	0	0	44	20	31.25
TPP2	0	genome.wustl.edu	37	13	103257246	103257246	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	13	103257246	103257246	T	G	SNP	TPP2	ENST00000376065	human	ensembl	74_37	+1	known	missense	c.269	p.V90G	0.438	pfam_Peptidase_S8/S53_dom,superfamily_Peptidase_S8/S53_dom	pfam_Peptidase_S8/S53_dom,pfam_Peptidase_S8A_TPPII,superfamily_Peptidase_S8/S53_dom,prints_Peptidase_S8_subtilisin-rel	-	no_errors	TPP2	HGNC	ENSG00000134900				158	0	0	102	38	27.1429
COL4A1	0	genome.wustl.edu	37	13	110835372	110835372	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	13	110835372	110835372	C	T	SNP	COL4A1	ENST00000375820	human	ensembl	74_37	-1	known	missense	c.2063	p.G688D	1.000	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A1	HGNC	ENSG00000187498				11	0	0	11	4	26.6667
COL4A2	0	genome.wustl.edu	37	13	111117854	111117854	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	13	111117854	111117854	G	A	SNP	COL4A2	ENST00000360467	human	ensembl	74_37	+1	known	missense	c.1879	p.G627S	0.997	NULL	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A2	HGNC	ENSG00000134871				32	0	0	26	8	23.5294
ARHGEF7	0	genome.wustl.edu	37	13	111926266	111926266	+	Silent	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	13	111926266	111926266	T	C	SNP	ARHGEF7	ENST00000375741	human	ensembl	74_37	+1	known	silent	c.1242	p.P414	0.284	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_SH3_2,pfam_SH3_domain,pfam_Pleckstrin_homology,pfam_CH-domain,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain	-	no_errors	ARHGEF7	HGNC	ENSG00000102606				53	0	0	45	14	23.7288
GAS6	0	genome.wustl.edu	37	13	114526521	114526521	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	13	114526521	114526521	G	A	SNP	GAS6	ENST00000357389	human	ensembl	74_37	-1	known	missense	c.1609	p.R537W	0.000	superfamily_ConA-like_lec_gl_sf,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,pfam_GLA_domain,superfamily_ConA-like_lec_gl_sf,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Laminin_G,prints_GLA_domain	-	no_errors	GAS6	HGNC	ENSG00000183087				44	0	0	38	11	22.449
GJB6	0	genome.wustl.edu	37	13	20797345	20797345	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	13	20797345	20797345	G	A	SNP	GJB6	ENST00000241124	human	ensembl	74_37	-1	known	missense	c.275	p.A92V	1.000	pfam_Connexin_N,prints_Connexin	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin	-	no_errors	GJB6	HGNC	ENSG00000121742				37	0	0	29	5	14.7059
MICU2	0	genome.wustl.edu	37	13	22070218	22070218	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	13	22070218	22070218	T	C	SNP	MICU2	ENST00000382374	human	ensembl	74_37	-1	known	missense	c.1015	p.S339G	0.944	NULL	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	MICU2	HGNC	ENSG00000165487				50	0	0	35	9	20.4545
SGCG	0	genome.wustl.edu	37	13	23824814	23824814	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	13	23824814	23824814	G	A	SNP	SGCG	ENST00000218867	human	ensembl	74_37	+1	known	missense	c.343	p.A115T	0.472	pfam_Sarcoglycan	pfam_Sarcoglycan	-	no_errors	SGCG	HGNC	ENSG00000102683				32	0	0	33	13	28.2609
ATP12A	0	genome.wustl.edu	37	13	25262595	25262595	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	13	25262595	25262595	G	A	SNP	ATP12A	ENST00000218548	human	ensembl	74_37	+1	known	missense	c.367	p.A123T	0.995	pfam_ATPase_P-typ_cation-transptr_N,smart_ATPase_P-typ_cation-transptr_N,tigrfam_ATPase_P-typ_Na/K_IIC	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP12A	HGNC	ENSG00000075673				219	1	0.454545	217	63	22.5
GSX1	0	genome.wustl.edu	37	13	28367816	28367816	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	13	28367816	28367816	C	T	SNP	GSX1	ENST00000302945	human	ensembl	74_37	+1	known	missense	c.526	p.R176C	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	GSX1	HGNC	ENSG00000169840				80	0	0	76	18	19.1489
PAN3	0	genome.wustl.edu	37	13	28834653	28834653	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	13	28834653	28834653	G	A	SNP	PAN3	ENST00000380958	human	ensembl	74_37	+1	known	missense	c.1318	p.A440T	1.000	NULL	superfamily_Kinase-like_dom,smart_Znf_CCCH,pfscan_Prot_kinase_dom	-	no_errors	PAN3	HGNC	ENSG00000152520				89	0	0	71	6	7.79221
RXFP2	0	genome.wustl.edu	37	13	32366011	32366011	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	13	32366011	32366011	G	A	SNP	RXFP2	ENST00000298386	human	ensembl	74_37	+1	known	missense	c.1214	p.G405D	1.000	prints_Relaxin_rcpt	pfam_GPCR_Rhodpsn,pfam_Leu-rich_rpt,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Leu-rich_rpt_typical-subtyp,pfscan_LDrepeatLR_classA_rpt,pfscan_GPCR_Rhodpsn_7TM,prints_Relaxin_rcpt,prints_GPCR_Rhodpsn,prints_Gphrmn_rcpt_fam	-	no_errors	RXFP2	HGNC	ENSG00000133105				80	0	0	41	18	30.5085
EEF1DP3	0	genome.wustl.edu	37	13	32527044	32527044	+	RNA	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	13	32527044	32527044	G	A	SNP	EEF1DP3	ENST00000428783	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.444	-	-	-	no_errors	EEF1DP3	HGNC	ENSG00000229715				35	0	0	30	5	14.2857
SPG20	0	genome.wustl.edu	37	13	36909438	36909438	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	13	36909438	36909438	T	C	SNP	SPG20	ENST00000355182	human	ensembl	74_37	-1	known	missense	c.530	p.Q177R	0.993	NULL	pfam_Senescence/spartin,pfam_MIT,smart_MIT	-	no_errors	SPG20	HGNC	ENSG00000133104				60	0	0	37	14	27.451
SMAD9	0	genome.wustl.edu	37	13	37453862	37453862	+	RNA	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	13	37453862	37453862	C	T	SNP	SMAD9	ENST00000483941	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SMAD9	HGNC	ENSG00000120693				15	0	0	20	11	35.4839
NAA16	0	genome.wustl.edu	37	13	41943312	41943312	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	13	41943312	41943312	C	T	SNP	NAA16	ENST00000379406	human	ensembl	74_37	+1	known	missense	c.1840	p.H614Y	1.000	pirsf_NatA_aux_su	pfam_TPR_2,pfam_NatA_aux_su,pfam_TPR_1,smart_TPR_repeat,pirsf_NatA_aux_su,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	NAA16	HGNC	ENSG00000172766				109	0	0	72	26	26.5306
TPT1	0	genome.wustl.edu	37	13	45914128	45914128	+	Splice_Site	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	13	45914128	45914128	C	A	SNP	TPT1	ENST00000530705	human	ensembl	74_37	-1	known	splice_site	c.293+1	e3+1	1.000	-	-	-	no_errors	TPT1	HGNC	ENSG00000133112				57	0	0	38	8	17.3913
NEK5	0	genome.wustl.edu	37	13	52639595	52639595	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	13	52639595	52639595	C	T	SNP	NEK5	ENST00000355568	human	ensembl	74_37	-1	known	missense	c.2075	p.R692H	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK5	HGNC	ENSG00000197168				90	0	0	37	25	40.3226
SUGT1	0	genome.wustl.edu	37	13	53239778	53239778	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	13	53239778	53239778	C	T	SNP	SUGT1	ENST00000343788	human	ensembl	74_37	+1	known	silent	c.525	p.D175	1.000	pfam_CS_dom,superfamily_HSP20-like_chaperone,pfscan_CS_dom	pfam_SGS,pfam_CS_dom,superfamily_HSP20-like_chaperone,smart_TPR_repeat,pfscan_CS_dom,pfscan_SGS,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	SUGT1	HGNC	ENSG00000165416				31	0	0	18	7	28
PCDH17	0	genome.wustl.edu	37	13	58208795	58208795	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	13	58208795	58208795	G	A	SNP	PCDH17	ENST00000377918	human	ensembl	74_37	+1	known	silent	c.2115	p.S705	0.952	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH17	HGNC	ENSG00000118946				59	0	0	43	8	15.6863
DIAPH3	0	genome.wustl.edu	37	13	60413550	60413550	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	13	60413550	60413550	G	A	SNP	DIAPH3	ENST00000400324	human	ensembl	74_37	-1	known	nonsense	c.2770	p.Q924*	1.000	pfam_FH2_Formin,smart_FH2_Formin	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,pfam_Drf_DAD,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	DIAPH3	HGNC	ENSG00000139734				45	0	0	45	13	22.4138
PCDH9	0	genome.wustl.edu	37	13	67802393	67802393	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	13	67802393	67802393	G	A	SNP	PCDH9	ENST00000377865	human	ensembl	74_37	-1	known	silent	c.180	p.A60	1.000	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH9	HGNC	ENSG00000184226				65	0	0	34	13	27.6596
BORA	0	genome.wustl.edu	37	13	73327858	73327858	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	13	73327858	73327858	G	T	SNP	BORA	ENST00000390667	human	ensembl	74_37	+1	known	nonsense	c.1513	p.G505*	1.000	NULL	prints_Aurora_borealis_protien	-	no_errors	BORA	HGNC	ENSG00000136122				84	0	0	53	9	14.5161
MYCBP2	0	genome.wustl.edu	37	13	77657276	77657276	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	13	77657276	77657276	C	T	SNP	MYCBP2	ENST00000407578	human	ensembl	74_37	-1	known	missense	c.10927	p.G3643R	1.000	superfamily_ARM-type_fold	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_RCC1/BLIP-II,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810				117	0	0	94	36	27.6923
SLITRK6	0	genome.wustl.edu	37	13	86370288	86370288	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	13	86370288	86370288	A	T	SNP	SLITRK6	ENST00000400286	human	ensembl	74_37	-1	known	missense	c.356	p.I119N	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK6	HGNC	ENSG00000184564				99	0	0	63	17	21.25
GPC5	0	genome.wustl.edu	37	13	93518632	93518632	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	13	93518632	93518632	G	A	SNP	GPC5	ENST00000377067	human	ensembl	74_37	+1	known	silent	c.1659	p.A553	0.000	pfam_Glypican	pfam_Glypican	-	no_errors	GPC5	HGNC	ENSG00000179399				114	0	0	74	26	26
MOK	0	genome.wustl.edu	37	14	102695911	102695911	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	14	102695911	102695911	C	T	SNP	MOK	ENST00000519058	human	ensembl	74_37	-1	putative	missense	c.148	p.G50R	0.000	NULL	NULL	-	no_errors	MOK	HGNC	ENSG00000080823				55	0	0	35	12	25.5319
TNFAIP2	0	genome.wustl.edu	37	14	103601572	103601572	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	14	103601572	103601572	G	A	SNP	TNFAIP2	ENST00000333007	human	ensembl	74_37	+1	known	missense	c.1840	p.A614T	0.960	pfam_Sec6	pfam_Sec6	-	no_errors	TNFAIP2	HGNC	ENSG00000185215				49	0	0	27	7	20.5882
PACS2	0	genome.wustl.edu	37	14	105833659	105833659	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	14	105833659	105833659	C	A	SNP	PACS2	ENST00000458164	human	ensembl	74_37	+1	known	missense	c.533	p.P178H	1.000	NULL	pfam_Phosphofurin_acidic_CS-1	-	no_errors	PACS2	HGNC	ENSG00000179364				49	0	0	42	10	19.2308
TEP1	0	genome.wustl.edu	37	14	20853225	20853225	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	14	20853225	20853225	A	G	SNP	TEP1	ENST00000262715	human	ensembl	74_37	-1	known	missense	c.3026	p.V1009A	1.000	NULL	pfam_TROVE,pfam_TEP1_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pfscan_NACHT_NTPase,pfscan_TROVE,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TEP1	HGNC	ENSG00000129566				49	0	0	25	14	35.8974
TEP1	0	genome.wustl.edu	37	14	20871992	20871992	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	14	20871992	20871992	G	A	SNP	TEP1	ENST00000262715	human	ensembl	74_37	-1	known	missense	c.1084	p.R362C	1.000	pfam_TROVE,pfscan_TROVE	pfam_TROVE,pfam_TEP1_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pfscan_NACHT_NTPase,pfscan_TROVE,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TEP1	HGNC	ENSG00000129566				47	0	0	37	11	22.9167
SALL2	0	genome.wustl.edu	37	14	21993076	21993076	+	Silent	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	14	21993076	21993076	A	G	SNP	SALL2	ENST00000327430	human	ensembl	74_37	-1	known	silent	c.786	p.S262	0.746	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL2	HGNC	ENSG00000165821				29	0	0	24	5	17.2414
MYH7	0	genome.wustl.edu	37	14	23902741	23902741	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	14	23902741	23902741	C	A	SNP	MYH7	ENST00000355349	human	ensembl	74_37	-1	known	missense	c.201	p.K67N	1.000	pfam_Myosin_N,superfamily_P-loop_NTPase	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7	HGNC	ENSG00000092054				61	0	0	30	14	31.8182
PCK2	0	genome.wustl.edu	37	14	24572963	24572963	+	Silent	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	14	24572963	24572963	A	G	SNP	PCK2	ENST00000216780	human	ensembl	74_37	+1	known	silent	c.1713	p.T571	0.472	pfam_PEP_carboxykinase_GTP,pirsf_PEP_carboxykinase_GTP	pfam_PEP_carboxykinase_GTP,superfamily_PEP_carboxykinase_N,pirsf_PEP_carboxykinase_GTP	-	no_errors	PCK2	HGNC	ENSG00000100889				57	0	0	20	13	39.3939
FOXG1	0	genome.wustl.edu	37	14	29237047	29237047	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	14	29237047	29237047	G	A	SNP	FOXG1	ENST00000313071	human	ensembl	74_37	+1	known	missense	c.562	p.A188T	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXG1	HGNC	ENSG00000176165				37	0	0	16	5	23.8095
PPP2R3C	0	genome.wustl.edu	37	14	35564337	35564337	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	14	35564337	35564337	G	A	SNP	PPP2R3C	ENST00000261475	human	ensembl	74_37	-1	known	missense	c.892	p.L298F	1.000	NULL	NULL	-	no_errors	PPP2R3C	HGNC	ENSG00000092020				57	0	0	27	6	18.1818
SSTR1	0	genome.wustl.edu	37	14	38678777	38678777	+	Silent	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	14	38678777	38678777	C	A	SNP	SSTR1	ENST00000267377	human	ensembl	74_37	+1	known	silent	c.183	p.I61	1.000	prints_GPCR_Rhodpsn,prints_Somatstn_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Somatstn_rcpt_1,prints_GPCR_Rhodpsn,prints_Somatstn_rcpt,prints_Opioid_rcpt,prints_NPY_rcpt,prints_Neuropept_B/W_rcpt	-	no_errors	SSTR1	HGNC	ENSG00000139874				60	0	0	30	14	31.8182
NIN	0	genome.wustl.edu	37	14	51192775	51192775	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	14	51192775	51192775	C	T	SNP	NIN	ENST00000245441	human	ensembl	74_37	-1	known	missense	c.6088	p.E2030K	0.998	NULL	superfamily_tRNA-bd_arm,pfscan_EF_hand_dom	-	no_errors	NIN	HGNC	ENSG00000100503				67	0	0	25	21	45.6522
TRIM9	0	genome.wustl.edu	37	14	51561483	51561483	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	14	51561483	51561483	C	T	SNP	TRIM9	ENST00000338969	human	ensembl	74_37	-1	known	missense	c.175	p.D59N	1.000	smart_Znf_RING	pfam_SPRY_rcpt,pfam_Fibronectin_type3,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM9	HGNC	ENSG00000100505				12	0	0	5	3	37.5
C14orf166	0	genome.wustl.edu	37	14	52466489	52466489	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	14	52466489	52466489	A	G	SNP	C14orf166	ENST00000261700	human	ensembl	74_37	+1	known	missense	c.437	p.H146R	1.000	pfam_UPF0568	pfam_UPF0568	-	no_errors	C14orf166	HGNC	ENSG00000087302				74	0	0	39	13	25
BMP4	0	genome.wustl.edu	37	14	54417278	54417278	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	14	54417278	54417278	C	T	SNP	BMP4	ENST00000245451	human	ensembl	74_37	-1	known	silent	c.699	p.G233	1.000	pfam_TGF-b_N	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	BMP4	HGNC	ENSG00000125378				64	0	0	37	9	19.5652
C14orf105	0	genome.wustl.edu	37	14	57960431	57960431	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	14	57960431	57960431	C	A	SNP	C14orf105	ENST00000216445	human	ensembl	74_37	-1	known	missense	c.3	p.M1I	1.000	NULL	NULL	-	no_errors	C14orf105	HGNC	ENSG00000100557				26	0	0	13	7	35
KIAA0586	0	genome.wustl.edu	37	14	58943922	58943922	+	Silent	SNP	A	A	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	14	58943922	58943922	A	C	SNP	KIAA0586	ENST00000556134	human	ensembl	74_37	+1	known	silent	c.2862	p.S954	0.999	NULL	NULL	-	no_errors	KIAA0586	HGNC	ENSG00000100578				17	0	0	9	2	18.1818
PCNXL4	0	genome.wustl.edu	37	14	60591468	60591468	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	14	60591468	60591468	A	G	SNP	PCNXL4	ENST00000404681	human	ensembl	74_37	+1	known	missense	c.2579	p.Q860R	0.001	NULL	pfam_Pecanex	-	no_errors	PCNXL4	HGNC	ENSG00000126773				213	0	0	87	32	26.8908
PRKCH	0	genome.wustl.edu	37	14	62016477	62016477	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	14	62016477	62016477	G	T	SNP	PRKCH	ENST00000332981	human	ensembl	74_37	+1	known	missense	c.1980	p.E660D	0.999	pfam_Pkinase_C,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,pfam_C2_dom,superfamily_Kinase-like_dom,superfamily_C2_dom,smart_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	PRKCH	HGNC	ENSG00000027075				100	0	0	46	25	35.2113
PPP2R5E	0	genome.wustl.edu	37	14	63863413	63863413	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	14	63863413	63863413	C	T	SNP	PPP2R5E	ENST00000337537	human	ensembl	74_37	-1	known	missense	c.571	p.E191K	1.000	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	-	no_errors	PPP2R5E	HGNC	ENSG00000154001				67	0	0	31	13	29.5455
HSPA2	0	genome.wustl.edu	37	14	65007553	65007553	+	RNA	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	14	65007553	65007553	C	T	SNP	HSPA2	ENST00000554883	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.002	-	-	-	no_errors	HSPA2	HGNC	ENSG00000126803				42	0	0	17	7	29.1667
TMEM229B	0	genome.wustl.edu	37	14	67940214	67940214	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	14	67940214	67940214	G	A	SNP	TMEM229B	ENST00000357461	human	ensembl	74_37	-1	known	missense	c.427	p.R143C	1.000	NULL	pfam_DUF1113_TMEM229	-	no_errors	TMEM229B	HGNC	ENSG00000198133				20	0	0	7	10	58.8235
SYNJ2BP	0	genome.wustl.edu	37	14	70855230	70855230	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	14	70855230	70855230	G	A	SNP	SYNJ2BP	ENST00000256366	human	ensembl	74_37	-1	known	missense	c.158	p.A53V	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SYNJ2BP	HGNC	ENSG00000213463				35	0	0	24	5	17.2414
PCNX	0	genome.wustl.edu	37	14	71455319	71455319	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	14	71455319	71455319	C	T	SNP	PCNX	ENST00000304743	human	ensembl	74_37	+1	known	missense	c.2347	p.R783C	1.000	NULL	pfam_Pecanex	-	no_errors	PCNX	HGNC	ENSG00000100731				103	0	0	53	26	32.9114
SIPA1L1	0	genome.wustl.edu	37	14	72055785	72055785	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	14	72055785	72055785	G	A	SNP	SIPA1L1	ENST00000555818	human	ensembl	74_37	+1	known	missense	c.1196	p.S399N	0.850	NULL	pfam_DUF3401,pfam_Rap_GAP_dom,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L1	HGNC	ENSG00000197555				67	0	0	33	14	29.7872
RBM25	0	genome.wustl.edu	37	14	73566386	73566386	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	14	73566386	73566386	T	A	SNP	RBM25	ENST00000261973	human	ensembl	74_37	+1	known	missense	c.795	p.N265K	1.000	NULL	pfam_PWI_dom,pfam_RRM_dom,superfamily_PWI_dom,smart_RRM_dom,smart_PWI_dom,pfscan_RRM_dom	-	no_errors	RBM25	HGNC	ENSG00000119707				99	0	0	58	26	30.9524
ELMSAN1	0	genome.wustl.edu	37	14	74203800	74203800	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	14	74203800	74203800	G	A	SNP	ELMSAN1	ENST00000286523	human	ensembl	74_37	-1	known	silent	c.1650	p.D550	0.345	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	ELMSAN1	HGNC	ENSG00000156030				63	0	0	28	10	26.3158
AREL1	0	genome.wustl.edu	37	14	75139565	75139565	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	14	75139565	75139565	A	G	SNP	AREL1	ENST00000356357	human	ensembl	74_37	-1	known	missense	c.1391	p.L464P	1.000	superfamily_HECT	pfam_HECT,pfam_Filamin/ABP280_repeat-like,superfamily_HECT,superfamily_Ig_E-set,smart_HECT,pfscan_Filamin/ABP280_repeat-like,pfscan_HECT	-	no_errors	AREL1	HGNC	ENSG00000119682				152	0	0	68	15	18.0723
FLRT2	0	genome.wustl.edu	37	14	86087980	86087980	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	14	86087980	86087980	G	A	SNP	FLRT2	ENST00000330753	human	ensembl	74_37	+1	known	missense	c.122	p.R41H	1.000	pfam_LRR-contain_N,smart_LRR-contain_N	pfam_Leu-rich_rpt,pfam_Fibronectin_type3,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Fibronectin_type3	-	no_errors	FLRT2	HGNC	ENSG00000185070				102	0	0	58	14	19.4444
CCDC88C	0	genome.wustl.edu	37	14	91780228	91780228	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	14	91780228	91780228	G	A	SNP	CCDC88C	ENST00000389857	human	ensembl	74_37	-1	known	silent	c.1932	p.N644	0.196	superfamily_Fum_Rdtase/Succ_DH_flav-like_C	pfam_Hook-related_fam,superfamily_Prefoldin,superfamily_Fum_Rdtase/Succ_DH_flav-like_C	-	no_errors	CCDC88C	HGNC	ENSG00000015133				13	0	0	11	8	42.1053
FBLN5	0	genome.wustl.edu	37	14	92406952	92406952	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	14	92406952	92406952	G	A	SNP	FBLN5	ENST00000342058	human	ensembl	74_37	-1	known	silent	c.81	p.C27	1.000	NULL	pfam_EGF-like_Ca-bd_dom,superfamily_TIL_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	-	no_errors	FBLN5	HGNC	ENSG00000140092				47	0	0	15	6	28.5714
LGMN	0	genome.wustl.edu	37	14	93176196	93176196	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	14	93176196	93176196	T	G	SNP	LGMN	ENST00000334869	human	ensembl	74_37	-1	known	missense	c.841	p.M281L	1.000	pfam_Peptidase_C13	pfam_Peptidase_C13,prints_Peptidase_C13	-	no_errors	LGMN	HGNC	ENSG00000100600				60	0	0	28	10	26.3158
SERPINA6	0	genome.wustl.edu	37	14	94780499	94780499	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	14	94780499	94780499	A	G	SNP	SERPINA6	ENST00000341584	human	ensembl	74_37	-1	known	missense	c.487	p.W163R	0.020	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINA6	HGNC	ENSG00000170099				88	0	0	33	8	19.5122
SETD3	0	genome.wustl.edu	37	14	99871571	99871571	+	Silent	SNP	G	G	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	14	99871571	99871571	G	T	SNP	SETD3	ENST00000331768	human	ensembl	74_37	-1	known	silent	c.1062	p.A354	0.003	pfam_Rubisco_LSMT_subst-bd,superfamily_Rubisco_LSMT_subst-bd	pfam_Rubisco_LSMT_subst-bd,pfam_SET_dom,superfamily_Rubisco_LSMT_subst-bd	-	no_errors	SETD3	HGNC	ENSG00000183576				128	0	0	67	33	33
LYSMD4	0	genome.wustl.edu	37	15	100272053	100272053	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	15	100272053	100272053	C	T	SNP	LYSMD4	ENST00000344791	human	ensembl	74_37	-1	known	missense	c.64	p.G22R	1.000	NULL	NULL	-	no_errors	LYSMD4	HGNC	ENSG00000183060				26	0	0	13	3	18.75
DNM1P46	0	genome.wustl.edu	37	15	100339938	100339938	+	RNA	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	15	100339938	100339938	C	T	SNP	DNM1P46	ENST00000341853	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.992	-	-	-	no_errors	DNM1P46	HGNC	ENSG00000182397				20	0	0	23	7	23.3333
DNM1P46	0	genome.wustl.edu	37	15	100339960	100339960	+	RNA	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	15	100339960	100339960	G	A	SNP	DNM1P46	ENST00000341853	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DNM1P46	HGNC	ENSG00000182397				28	0	0	25	6	19.3548
CHSY1	0	genome.wustl.edu	37	15	101775430	101775430	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	15	101775430	101775430	C	T	SNP	CHSY1	ENST00000254190	human	ensembl	74_37	-1	known	missense	c.673	p.V225M	1.000	pfam_Fringe-like	pfam_Chond_GalNAc,pfam_Fringe-like	-	no_errors	CHSY1	HGNC	ENSG00000131873				54	0	0	49	4	7.54717
TM2D3	0	genome.wustl.edu	37	15	102182749	102182749	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	15	102182749	102182749	G	A	SNP	TM2D3	ENST00000333202	human	ensembl	74_37	-1	known	missense	c.677	p.T226M	1.000	pfam_TM2	pfam_TM2	-	no_errors	TM2D3	HGNC	ENSG00000184277				96	0	0	37	22	37.2881
TARSL2	0	genome.wustl.edu	37	15	102224299	102224299	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	15	102224299	102224299	G	A	SNP	TARSL2	ENST00000335968	human	ensembl	74_37	-1	known	silent	c.1629	p.H543	1.000	pfam_aa-tRNA-synt_IIb_cons-dom,pfscan_aa-tRNA-synth_II,prints_Thr-tRNA-ligase_IIa,tigrfam_Thr-tRNA-ligase_IIa	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_TGS,pfam_tRNA_SAD,superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_Anticodon-bd,superfamily_TGS-like,smart_tRNA_SAD,pfscan_aa-tRNA-synth_II,prints_Thr-tRNA-ligase_IIa,tigrfam_Thr-tRNA-ligase_IIa	-	no_errors	TARSL2	HGNC	ENSG00000185418				53	0	0	20	10	33.3333
ATP10A	0	genome.wustl.edu	37	15	25953366	25953366	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	15	25953366	25953366	C	T	SNP	ATP10A	ENST00000356865	human	ensembl	74_37	-1	known	missense	c.2426	p.R809H	1.000	superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP10A	HGNC	ENSG00000206190				74	0	0	44	11	20
HERC2	0	genome.wustl.edu	37	15	28421604	28421604	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	15	28421604	28421604	G	A	SNP	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	missense	c.9656	p.A3219V	1.000	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,pfscan_Reg_chr_condens,prints_Reg_chr_condens	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731				73	0	0	33	14	29.7872
OTUD7A	0	genome.wustl.edu	37	15	31819407	31819407	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	15	31819407	31819407	G	A	SNP	OTUD7A	ENST00000382902	human	ensembl	74_37	-1	known	nonsense	c.757	p.Q253*	1.000	pfam_OTU,pfscan_OTU	pfam_OTU,superfamily_UBA-like,smart_Znf_A20,pfscan_OTU,pfscan_Znf_A20	-	no_errors	OTUD7A	HGNC	ENSG00000169918				89	0	0	58	24	29.2683
AVEN	0	genome.wustl.edu	37	15	34159951	34159951	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	15	34159951	34159951	G	C	SNP	AVEN	ENST00000306730	human	ensembl	74_37	-1	known	missense	c.718	p.P240A	0.000	NULL	NULL	-	no_errors	AVEN	HGNC	ENSG00000169857				66	0	0	39	11	22
NUTM1	0	genome.wustl.edu	37	15	34648763	34648763	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	15	34648763	34648763	C	T	SNP	NUTM1	ENST00000333756	human	ensembl	74_37	+1	known	nonsense	c.2470	p.Q824*	0.008	NULL	NULL	-	no_errors	NUTM1	HGNC	ENSG00000184507				76	0	0	36	13	26.5306
RTF1	0	genome.wustl.edu	37	15	41772868	41772868	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	15	41772868	41772868	C	T	SNP	RTF1	ENST00000389629	human	ensembl	74_37	+1	known	nonsense	c.2116	p.R706*	1.000	NULL	pfam_Plus-3,smart_Plus3-dom_subgr	-	no_errors	RTF1	HGNC	ENSG00000137815				55	0	0	26	4	13.3333
MGA	0	genome.wustl.edu	37	15	41988756	41988756	+	Silent	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	15	41988756	41988756	T	C	SNP	MGA	ENST00000219905	human	ensembl	74_37	+1	known	silent	c.1548	p.N516	0.032	NULL	pfam_TF_T-box,pfam_bHLH_dom,superfamily_p53-like_TF_DNA-bd,superfamily_bHLH_dom,smart_TF_T-box,smart_bHLH_dom,pfscan_bHLH_dom,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	MGA	HGNC	ENSG00000174197				51	0	0	31	15	32.6087
ZSCAN29	0	genome.wustl.edu	37	15	43661966	43661966	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	15	43661966	43661966	G	A	SNP	ZSCAN29	ENST00000396976	human	ensembl	74_37	-1	known	missense	c.146	p.P49L	0.996	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN29	HGNC	ENSG00000140265				50	0	0	41	14	25.4545
FBN1	0	genome.wustl.edu	37	15	48741074	48741074	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	15	48741074	48741074	T	G	SNP	FBN1	ENST00000316623	human	ensembl	74_37	-1	known	missense	c.5562	p.Q1854H	0.995	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_FBN,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147				50	0	0	22	7	24.1379
GALK2	0	genome.wustl.edu	37	15	49575851	49575851	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	15	49575851	49575851	A	C	SNP	GALK2	ENST00000560031	human	ensembl	74_37	+1	known	missense	c.692	p.E231A	1.000	pirsf_Galactokinase,tigrfam_Galactokinase	pfam_GalKase_gal-bd,pfam_GHMP_kinase_N_dom,pfam_GHMP_kinase_C_dom,superfamily_Ribosomal_S5_D2-typ_fold,pirsf_Galactokinase,prints_Mevalonate/galactokinase,prints_Galactokinase,tigrfam_Galactokinase	-	no_errors	GALK2	HGNC	ENSG00000156958				41	0	0	36	2	5.26316
ONECUT1	0	genome.wustl.edu	37	15	53081051	53081051	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	15	53081051	53081051	C	T	SNP	ONECUT1	ENST00000305901	human	ensembl	74_37	-1	known	missense	c.1031	p.R344Q	1.000	pfam_Hmoeo_CUT,superfamily_Lambda_DNA-bd_dom,pfscan_Hmoeo_CUT	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	ONECUT1	HGNC	ENSG00000169856				27	0	0	17	6	26.087
TCF12	0	genome.wustl.edu	37	15	57545469	57545469	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	15	57545469	57545469	A	G	SNP	TCF12	ENST00000438423	human	ensembl	74_37	+1	known	missense	c.1270	p.M424V	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	TCF12	HGNC	ENSG00000140262				78	0	0	40	17	29.8246
ALDH1A2	0	genome.wustl.edu	37	15	58285256	58285256	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	15	58285256	58285256	G	A	SNP	ALDH1A2	ENST00000249750	human	ensembl	74_37	-1	known	silent	c.571	p.L191	1.000	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH1A2	HGNC	ENSG00000128918				73	0	0	40	10	20
GCNT3	0	genome.wustl.edu	37	15	59911456	59911456	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	15	59911456	59911456	G	A	SNP	GCNT3	ENST00000396065	human	ensembl	74_37	+1	known	missense	c.1019	p.R340Q	0.997	pfam_Glyco_trans_14	pfam_Glyco_trans_14	-	no_errors	GCNT3	HGNC	ENSG00000140297				120	0	0	90	5	5.26316
TLN2	0	genome.wustl.edu	37	15	62994288	62994288	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	15	62994288	62994288	C	T	SNP	TLN2	ENST00000306829	human	ensembl	74_37	+1	known	silent	c.1794	p.A598	0.018	pfam_Talin_cent,superfamily_Talin_cent	pfam_Talin_cent,pfam_ILWEQ_dom,pfam_Vinculin-bd_dom,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ_dom,pfscan_FERM_domain,pfscan_ILWEQ_dom	-	no_errors	TLN2	HGNC	ENSG00000171914				63	0	0	16	7	30.4348
APH1B	0	genome.wustl.edu	37	15	63598041	63598041	+	RNA	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	15	63598041	63598041	C	T	SNP	APH1B	ENST00000559823	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	APH1B	HGNC	ENSG00000138613				24	0	0	8	6	42.8571
IGDCC4	0	genome.wustl.edu	37	15	65677433	65677433	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	15	65677433	65677433	G	T	SNP	IGDCC4	ENST00000352385	human	ensembl	74_37	-1	novel	missense	c.3201	p.S1067R	0.000	NULL	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	IGDCC4	HGNC	ENSG00000103742				10	0	0	7	8	53.3333
SLC24A1	0	genome.wustl.edu	37	15	65946296	65946296	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	15	65946296	65946296	C	T	SNP	SLC24A1	ENST00000261892	human	ensembl	74_37	+1	known	missense	c.3179	p.A1060V	1.000	pfam_NaCa_Exmemb,tigrfam_K/Na/Ca-exchanger	pfam_NaCa_Exmemb,tigrfam_K-dep_Na/Ca-exchanger,tigrfam_K/Na/Ca-exchanger	-	no_errors	SLC24A1	HGNC	ENSG00000074621				166	0	0	89	28	23.9316
ITGA11	0	genome.wustl.edu	37	15	68617468	68617468	+	Splice_Site	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	15	68617468	68617468	C	T	SNP	ITGA11	ENST00000315757	human	ensembl	74_37	-1	known	splice_site	c.2322+1	e18+1	1.000	-	-	-	no_errors	ITGA11	HGNC	ENSG00000137809				39	0	0	26	4	13.3333
NOX5	0	genome.wustl.edu	37	15	69329504	69329504	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	15	69329504	69329504	G	A	SNP	NOX5	ENST00000388866	human	ensembl	74_37	+1	known	missense	c.1325	p.R442H	1.000	superfamily_Riboflavin_synthase-like_b-brl	pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	NOX5	HGNC	ENSG00000255346				51	0	0	23	12	34.2857
LRRC49	0	genome.wustl.edu	37	15	71193355	71193355	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	15	71193355	71193355	C	T	SNP	LRRC49	ENST00000260382	human	ensembl	74_37	+1	known	silent	c.288	p.S96	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC49	HGNC	ENSG00000137821				53	0	0	24	12	33.3333
NEO1	0	genome.wustl.edu	37	15	73470705	73470705	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	15	73470705	73470705	T	C	SNP	NEO1	ENST00000261908	human	ensembl	74_37	+1	known	missense	c.1228	p.C410R	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	NEO1	HGNC	ENSG00000067141				64	0	0	27	13	32.5
NEO1	0	genome.wustl.edu	37	15	73594972	73594972	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	15	73594972	73594972	C	T	SNP	NEO1	ENST00000261908	human	ensembl	74_37	+1	known	silent	c.4321	p.L1441	1.000	pfam_Neogenin_C	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	NEO1	HGNC	ENSG00000067141				37	0	0	28	8	22.2222
CSPG4	0	genome.wustl.edu	37	15	75968797	75968797	+	Silent	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	15	75968797	75968797	A	G	SNP	CSPG4	ENST00000308508	human	ensembl	74_37	-1	known	silent	c.6063	p.H2021	0.000	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	-	no_errors	CSPG4	HGNC	ENSG00000173546				92	0	0	59	24	28.9157
CHRNB4	0	genome.wustl.edu	37	15	78921917	78921917	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	15	78921917	78921917	C	T	SNP	CHRNB4	ENST00000261751	human	ensembl	74_37	-1	known	missense	c.730	p.V244M	0.988	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNB4	HGNC	ENSG00000117971				114	0	0	57	27	32.1429
SH3GL3	0	genome.wustl.edu	37	15	84237297	84237297	+	Nonstop_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	15	84237297	84237297	A	G	SNP	SH3GL3	ENST00000563901	human	ensembl	74_37	+1	known	nonstop	c.197	p.*66W	1.000	NULL	pfam_BAR_dom	-	no_errors	SH3GL3	HGNC	ENSG00000140600				80	0	0	44	13	22.807
ZSCAN2	0	genome.wustl.edu	37	15	85164068	85164068	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	15	85164068	85164068	C	T	SNP	ZSCAN2	ENST00000448803	human	ensembl	74_37	+1	known	silent	c.642	p.G214	0.982	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN2	HGNC	ENSG00000176371				104	0	0	49	12	19.6721
SLCO3A1	0	genome.wustl.edu	37	15	92647631	92647631	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	15	92647631	92647631	C	T	SNP	SLCO3A1	ENST00000318445	human	ensembl	74_37	+1	known	missense	c.868	p.P290S	0.998	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO3A1	HGNC	ENSG00000176463				53	0	0	35	13	27.0833
MCTP2	0	genome.wustl.edu	37	15	94901781	94901781	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	15	94901781	94901781	G	A	SNP	MCTP2	ENST00000357742	human	ensembl	74_37	+1	known	missense	c.1241	p.G414D	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,pfam_PRibTrfase_C,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	MCTP2	HGNC	ENSG00000140563				62	0	0	27	15	35.7143
SYNM	0	genome.wustl.edu	37	15	99671044	99671044	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	15	99671044	99671044	G	A	SNP	SYNM	ENST00000336292	human	ensembl	74_37	+1	known	missense	c.2476	p.E826K	0.998	NULL	pfam_IF	-	no_errors	SYNM	HGNC	ENSG00000182253				39	0	0	21	17	44.7368
BAIAP3	0	genome.wustl.edu	37	16	1394670	1394670	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	1394670	1394670	C	A	SNP	BAIAP3	ENST00000324385	human	ensembl	74_37	+1	known	nonsense	c.1833	p.C611*	0.990	NULL	pfam_C2_dom,pfam_Munc13_subgr_dom-2,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	BAIAP3	HGNC	ENSG00000007516				66	0	0	48	11	18.6441
ABCC6	0	genome.wustl.edu	37	16	16248763	16248763	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	16248763	16248763	G	A	SNP	ABCC6	ENST00000205557	human	ensembl	74_37	-1	known	silent	c.4008	p.H1336	0.940	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC6	HGNC	ENSG00000091262				9	0	0	9	5	35.7143
ABCC6	0	genome.wustl.edu	37	16	16302688	16302688	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	16302688	16302688	G	A	SNP	ABCC6	ENST00000205557	human	ensembl	74_37	-1	known	silent	c.691	p.L231	0.013	tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC6	HGNC	ENSG00000091262				43	0	0	33	6	15.3846
GPRC5B	0	genome.wustl.edu	37	16	19883873	19883873	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	19883873	19883873	A	G	SNP	GPRC5B	ENST00000537135	human	ensembl	74_37	-1	known	missense	c.373	p.F125L	1.000	pfam_GPCR_3_C,pfscan_GPCR_3_C	pfam_GPCR_3_C,pfscan_GPCR_3_C	-	no_errors	GPRC5B	HGNC	ENSG00000167191				18	0	0	15	3	16.6667
RPS2	0	genome.wustl.edu	37	16	2012162	2012162	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	2012162	2012162	G	A	SNP	RPS2	ENST00000343262	human	ensembl	74_37	-1	known	silent	c.819	p.L273	0.960	NULL	pfam_Ribosomal_S5_N,pfam_Ribosomal_S5_C,superfamily_Ribosomal_S5_D2-typ_fold,pfscan_Ribosomal_S5_N,tigrfam_Ribosomal_S5_euk/arc	-	no_errors	RPS2	HGNC	ENSG00000140988				40	0	0	24	6	20
ACSM1	0	genome.wustl.edu	37	16	20702489	20702489	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	20702489	20702489	G	A	SNP	ACSM1	ENST00000307493	human	ensembl	74_37	-1	known	missense	c.22	p.R8W	0.128	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM1	HGNC	ENSG00000166743				101	0	0	58	13	18.3099
DNAH3	0	genome.wustl.edu	37	16	21042447	21042447	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	21042447	21042447	G	A	SNP	DNAH3	ENST00000261383	human	ensembl	74_37	-1	known	missense	c.5359	p.R1787C	1.000	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486				78	0	0	44	12	21.4286
TRAF7	0	genome.wustl.edu	37	16	2222317	2222317	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	2222317	2222317	C	T	SNP	TRAF7	ENST00000326181	human	ensembl	74_37	+1	known	missense	c.601	p.P201S	0.001	superfamily_TRAF-like	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_TRAF-like,smart_Znf_RING,smart_WD40_repeat,pfscan_Znf_RING,pfscan_Znf_TRAF,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	TRAF7	HGNC	ENSG00000131653				14	0	0	7	2	22.2222
MLST8	0	genome.wustl.edu	37	16	2258499	2258499	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	2258499	2258499	G	A	SNP	MLST8	ENST00000397124	human	ensembl	74_37	+1	known	silent	c.747	p.T249	0.015	superfamily_WD40_repeat_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	MLST8	HGNC	ENSG00000167965				40	0	0	35	10	22.2222
IL4R	0	genome.wustl.edu	37	16	27353456	27353456	+	Silent	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	27353456	27353456	T	C	SNP	IL4R	ENST00000170630	human	ensembl	74_37	+1	known	silent	c.85	p.L29	0.004	pfam_IL-4_rcpt-alpha_N,superfamily_Fibronectin_type3	pfam_IL-4_rcpt-alpha_N,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL4R	HGNC	ENSG00000077238				42	0	0	32	6	15.7895
IL27	0	genome.wustl.edu	37	16	28513323	28513323	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	28513323	28513323	C	T	SNP	IL27	ENST00000356897	human	ensembl	74_37	-1	known	missense	c.436	p.D146N	0.773	superfamily_4_helix_cytokine-like_core	superfamily_4_helix_cytokine-like_core	-	no_errors	IL27	HGNC	ENSG00000197272				40	0	0	26	10	27.7778
KCTD13	0	genome.wustl.edu	37	16	29922371	29922371	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	29922371	29922371	G	A	SNP	KCTD13	ENST00000308768	human	ensembl	74_37	-1	known	silent	c.681	p.Y227	1.000	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	KCTD13	HGNC	ENSG00000174943				44	0	0	40	11	21.5686
HIRIP3	0	genome.wustl.edu	37	16	30005496	30005496	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	30005496	30005496	T	C	SNP	HIRIP3	ENST00000279392	human	ensembl	74_37	-1	known	missense	c.970	p.K324E	0.000	NULL	pfam_Histone_chaperone_domain_CHZ	-	no_errors	HIRIP3	HGNC	ENSG00000149929				122	0	0	84	15	15.1515
ITGAL	0	genome.wustl.edu	37	16	30490515	30490515	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	30490515	30490515	G	A	SNP	ITGAL	ENST00000356798	human	ensembl	74_37	+1	known	missense	c.431	p.R144H	0.002	NULL	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,prints_Integrin_alpha,pfscan_VWF_A	-	no_errors	ITGAL	HGNC	ENSG00000005844				57	0	0	39	11	22
ZNF668	0	genome.wustl.edu	37	16	31072722	31072722	+	Silent	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	31072722	31072722	A	G	SNP	ZNF668	ENST00000426488	human	ensembl	74_37	-1	known	silent	c.1596	p.A532	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF668	HGNC	ENSG00000167394				47	0	0	43	9	17.3077
KAT8	0	genome.wustl.edu	37	16	31131803	31131803	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	31131803	31131803	C	T	SNP	KAT8	ENST00000448516	human	ensembl	74_37	+1	known	missense	c.430	p.R144C	1.000	superfamily_Chromodomain-like	pfam_MOZ_SAS,pfam_Tudor-knot,superfamily_Acyl_CoA_acyltransferase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow	-	no_errors	KAT8	HGNC	ENSG00000103510				59	0	0	22	9	29.0323
ITGAX	0	genome.wustl.edu	37	16	31383801	31383801	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	31383801	31383801	G	A	SNP	ITGAX	ENST00000268296	human	ensembl	74_37	+1	known	missense	c.2263	p.A755T	0.000	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGAX	HGNC	ENSG00000140678				40	0	0	15	16	51.6129
AXIN1	0	genome.wustl.edu	37	16	339512	339512	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	339512	339512	C	T	SNP	AXIN1	ENST00000262320	human	ensembl	74_37	-1	known	missense	c.2390	p.R797H	1.000	pfam_DIX,smart_DIX,pfscan_DIX	pfam_DIX,pfam_RGS_dom,pfam_Axin_b-cat-bd,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_DIX,pfscan_DIX,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	AXIN1	HGNC	ENSG00000103126				28	0	0	30	13	30.2326
ADCY9	0	genome.wustl.edu	37	16	4164627	4164627	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	4164627	4164627	C	T	SNP	ADCY9	ENST00000294016	human	ensembl	74_37	-1	known	missense	c.817	p.G273R	0.003	NULL	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY9	HGNC	ENSG00000162104				29	0	0	30	10	25
ADCY9	0	genome.wustl.edu	37	16	4164980	4164980	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	4164980	4164980	A	G	SNP	ADCY9	ENST00000294016	human	ensembl	74_37	-1	known	missense	c.464	p.V155A	0.998	NULL	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY9	HGNC	ENSG00000162104				49	0	0	34	11	24.4444
TFAP4	0	genome.wustl.edu	37	16	4312636	4312636	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	4312636	4312636	G	A	SNP	TFAP4	ENST00000573476	human	ensembl	74_37	-1	known	missense	c.190	p.R64C	0.188	NULL	NULL	-	no_errors	TFAP4	HGNC	ENSG00000090447				50	0	0	31	34	52.3077
ZNF423	0	genome.wustl.edu	37	16	49671711	49671711	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	49671711	49671711	G	T	SNP	ZNF423	ENST00000262383	human	ensembl	74_37	-1	known	missense	c.1352	p.P451H	1.000	smart_Znf_C2H2-like	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF423	HGNC	ENSG00000102935				76	0	0	73	5	6.41026
ADCY7	0	genome.wustl.edu	37	16	50332842	50332842	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	50332842	50332842	C	A	SNP	ADCY7	ENST00000254235	human	ensembl	74_37	+1	known	missense	c.976	p.L326I	1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY7	HGNC	ENSG00000121281				62	0	0	40	15	27.2727
NOD2	0	genome.wustl.edu	37	16	50744697	50744697	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	50744697	50744697	C	T	SNP	NOD2	ENST00000300589	human	ensembl	74_37	+1	known	missense	c.875	p.A292V	0.932	superfamily_P-loop_NTPase	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_CARD	-	no_errors	NOD2	HGNC	ENSG00000167207				32	0	0	25	5	16.6667
SALL1	0	genome.wustl.edu	37	16	51174686	51174686	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	51174686	51174686	C	T	SNP	SALL1	ENST00000251020	human	ensembl	74_37	-1	known	missense	c.1447	p.G483R	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL1	HGNC	ENSG00000103449				120	0	0	61	24	28.2353
MMP2	0	genome.wustl.edu	37	16	55519218	55519218	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	55519218	55519218	C	T	SNP	MMP2	ENST00000219070	human	ensembl	74_37	+1	known	silent	c.537	p.G179	0.950	pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo,prints_Pept_M10A	pfam_Pept_M10_metallopeptidase,pfam_FN_type2_col-bd,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Kringle-like,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_FN_type2_col-bd,smart_Hemopexin-like_repeat,pfscan_FN_type2_col-bd,prints_Pept_M10A	-	no_errors	MMP2	HGNC	ENSG00000087245				137	0	0	104	11	9.56522
MMP2	0	genome.wustl.edu	37	16	55525756	55525756	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	55525756	55525756	C	T	SNP	MMP2	ENST00000219070	human	ensembl	74_37	+1	known	silent	c.1224	p.A408	0.093	pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo,prints_Pept_M10A	pfam_Pept_M10_metallopeptidase,pfam_FN_type2_col-bd,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Kringle-like,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_FN_type2_col-bd,smart_Hemopexin-like_repeat,pfscan_FN_type2_col-bd,prints_Pept_M10A	-	no_errors	MMP2	HGNC	ENSG00000087245				41	0	0	30	16	34.7826
CETP	0	genome.wustl.edu	37	16	57016121	57016121	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	57016121	57016121	C	T	SNP	CETP	ENST00000200676	human	ensembl	74_37	+1	known	silent	c.1293	p.T431	0.005	pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_C,pirsf_Cholesteryl_ester_transfer	pfam_Lipid-bd_serum_glycop_C,pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,smart_Lipid-bd_serum_glycop_C,pirsf_Cholesteryl_ester_transfer	-	no_errors	CETP	HGNC	ENSG00000087237				62	0	0	44	14	24.1379
NLRC5	0	genome.wustl.edu	37	16	57092035	57092035	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	57092035	57092035	C	T	SNP	NLRC5	ENST00000262510	human	ensembl	74_37	+1	known	nonsense	c.3805	p.Q1269*	0.008	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_Leu-rich_rpt,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_NACHT_NTPase	-	no_errors	NLRC5	HGNC	ENSG00000140853				13	0	0	15	11	42.3077
CCDC113	0	genome.wustl.edu	37	16	58288046	58288046	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	58288046	58288046	G	A	SNP	CCDC113	ENST00000219299	human	ensembl	74_37	+1	known	missense	c.373	p.D125N	0.977	NULL	NULL	-	no_errors	CCDC113	HGNC	ENSG00000103021				71	0	0	44	10	18.5185
GOT2	0	genome.wustl.edu	37	16	58757658	58757658	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	58757658	58757658	C	T	SNP	GOT2	ENST00000245206	human	ensembl	74_37	-1	known	missense	c.238	p.V80I	1.000	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase,prints_Asp_trans	-	no_errors	GOT2	HGNC	ENSG00000125166				193	0	0	127	30	19.1083
PLEKHG4	0	genome.wustl.edu	37	16	67319435	67319435	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	67319435	67319435	G	A	SNP	PLEKHG4	ENST00000360461	human	ensembl	74_37	+1	known	missense	c.2438	p.R813H	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG4	HGNC	ENSG00000196155				46	0	0	33	9	21.4286
LRRC36	0	genome.wustl.edu	37	16	67412553	67412553	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	67412553	67412553	T	A	SNP	LRRC36	ENST00000329956	human	ensembl	74_37	+1	known	missense	c.1868	p.I623N	0.980	NULL	NULL	-	no_errors	LRRC36	HGNC	ENSG00000159708				78	0	0	50	18	26.4706
EDC4	0	genome.wustl.edu	37	16	67909972	67909972	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	67909972	67909972	G	A	SNP	EDC4	ENST00000358933	human	ensembl	74_37	+1	known	missense	c.207	p.M69I	0.877	superfamily_WD40_repeat_dom	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EDC4	HGNC	ENSG00000038358				111	0	0	85	19	18.2692
PDPR	0	genome.wustl.edu	37	16	70154529	70154529	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	70154529	70154529	T	A	SNP	PDPR	ENST00000288050	human	ensembl	74_37	+1	known	missense	c.134	p.V45E	1.000	pfam_FAD-dep_OxRdtase,pfam_FAD_bind_dom	pfam_FAD-dep_OxRdtase,pfam_GCV_T_N,pfam_GCV_T_C,pfam_FAD_bind_dom	-	no_errors	PDPR	HGNC	ENSG00000090857				88	0	0	55	11	16.6667
DDX19B	0	genome.wustl.edu	37	16	70363885	70363885	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	70363885	70363885	C	A	SNP	DDX19B	ENST00000288071	human	ensembl	74_37	+1	known	missense	c.937	p.L313M	0.984	superfamily_P-loop_NTPase,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX19B	HGNC	ENSG00000157349				156	1	0.636943	129	20	13.4228
MARVELD3	0	genome.wustl.edu	37	16	71674764	71674764	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	71674764	71674764	C	T	SNP	MARVELD3	ENST00000299952	human	ensembl	74_37	+1	known	missense	c.1067	p.T356I	0.996	NULL	NULL	-	no_errors	MARVELD3	HGNC	ENSG00000140832				40	0	0	43	5	10.4167
DHX38	0	genome.wustl.edu	37	16	72138432	72138432	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	72138432	72138432	G	A	SNP	DHX38	ENST00000268482	human	ensembl	74_37	+1	known	silent	c.2058	p.T686	0.947	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX38	HGNC	ENSG00000140829				52	0	0	31	12	27.907
ZFHX3	0	genome.wustl.edu	37	16	72831435	72831435	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	72831435	72831435	C	T	SNP	ZFHX3	ENST00000268489	human	ensembl	74_37	-1	known	missense	c.5146	p.A1716T	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836				37	0	0	29	8	21.6216
ZFHX3	0	genome.wustl.edu	37	16	72993844	72993844	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	72993844	72993844	C	T	SNP	ZFHX3	ENST00000268489	human	ensembl	74_37	-1	known	silent	c.201	p.S67	0.286	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836				17	0	0	12	5	29.4118
JMJD8	0	genome.wustl.edu	37	16	733072	733072	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	733072	733072	G	A	SNP	JMJD8	ENST00000293882	human	ensembl	74_37	-1	known	missense	c.805	p.P269S	1.000	pfam_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,pfscan_JmjC_dom	-	no_errors	JMJD8	HGNC	ENSG00000161999				81	0	0	53	12	18.4615
TERF2IP	0	genome.wustl.edu	37	16	75690483	75690483	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	75690483	75690483	C	T	SNP	TERF2IP	ENST00000300086	human	ensembl	74_37	+1	known	missense	c.1174	p.R392W	1.000	NULL	pfam_Rap1_Myb_dom,superfamily_Homeodomain-like,superfamily_BRCT_dom	-	no_errors	TERF2IP	HGNC	ENSG00000166848				115	1	0.862069	67	17	20.2381
RBFOX1	0	genome.wustl.edu	37	16	7645632	7645632	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	7645632	7645632	C	T	SNP	RBFOX1	ENST00000547372	human	ensembl	74_37	+1	known	missense	c.679	p.R227C	1.000	pfam_RRM_dom,smart_RRM_dom,pirsf_RNA-bd_Fox-1,pfscan_RRM_dom	pfam_Fox-1_C_dom,pfam_RRM_dom,smart_RRM_dom,pirsf_RNA-bd_Fox-1,pfscan_RRM_dom	-	no_errors	RBFOX1	HGNC	ENSG00000078328				111	0	0	67	34	33.6634
CDH13	0	genome.wustl.edu	37	16	83159089	83159089	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	83159089	83159089	C	T	SNP	CDH13	ENST00000566620	human	ensembl	74_37	+1	known	missense	c.466	p.P156S	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH13	HGNC	ENSG00000140945				37	0	0	25	6	19.3548
COTL1	0	genome.wustl.edu	37	16	84623721	84623721	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	84623721	84623721	T	C	SNP	COTL1	ENST00000262428	human	ensembl	74_37	-1	known	missense	c.308	p.E103G	1.000	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin	-	no_errors	COTL1	HGNC	ENSG00000103187				35	0	0	29	4	12.1212
KLHL36	0	genome.wustl.edu	37	16	84691095	84691095	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	84691095	84691095	G	A	SNP	KLHL36	ENST00000564996	human	ensembl	74_37	+1	known	missense	c.682	p.A228T	1.000	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL36	HGNC	ENSG00000135686				17	0	0	13	4	23.5294
CRISPLD2	0	genome.wustl.edu	37	16	84906600	84906600	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	84906600	84906600	G	A	SNP	CRISPLD2	ENST00000262424	human	ensembl	74_37	+1	known	silent	c.984	p.S328	0.277	pfam_LCCL,superfamily_LCCL,smart_LCCL,pfscan_LCCL	pfam_LCCL,pfam_CAP_domain,superfamily_CAP_domain,superfamily_LCCL,smart_Allrgn_V5/Tpx1,smart_LCCL,pfscan_LCCL,prints_Allrgn_V5/Tpx1	-	no_errors	CRISPLD2	HGNC	ENSG00000103196				91	0	0	61	19	23.75
COX4I1	0	genome.wustl.edu	37	16	85834824	85834824	+	Silent	SNP	A	A	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	85834824	85834824	A	C	SNP	COX4I1	ENST00000253452	human	ensembl	74_37	+1	known	silent	c.13	p.R5	1.000	NULL	pfam_Cyt_c_oxidase_su4_fam,superfamily_Cyt_c_oxidase_su4_fam,prints_Cyt_c_oxidase_su4	-	no_errors	COX4I1	HGNC	ENSG00000131143				118	0	0	84	16	16
ZC3H18	0	genome.wustl.edu	37	16	88643556	88643556	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	88643556	88643556	C	T	SNP	ZC3H18	ENST00000301011	human	ensembl	74_37	+1	known	missense	c.25	p.R9W	0.979	NULL	smart_Znf_CCCH	-	no_errors	ZC3H18	HGNC	ENSG00000158545				30	0	0	22	3	12
TRAPPC2L	0	genome.wustl.edu	37	16	88925094	88925094	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	88925094	88925094	C	T	SNP	TRAPPC2L	ENST00000301021	human	ensembl	74_37	+1	known	missense	c.101	p.T34I	1.000	pfam_Sedlin,pfam_Sybindin,superfamily_Longin-like_dom	pfam_Sedlin,pfam_Sybindin,superfamily_Longin-like_dom	-	no_errors	TRAPPC2L	HGNC	ENSG00000167515				115	0	0	69	31	31
ANKRD11	0	genome.wustl.edu	37	16	89348801	89348801	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	89348801	89348801	G	A	SNP	ANKRD11	ENST00000301030	human	ensembl	74_37	-1	known	silent	c.4149	p.G1383	0.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD11	HGNC	ENSG00000167522				84	0	0	64	19	22.8916
MYH2	0	genome.wustl.edu	37	17	10447054	10447054	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	17	10447054	10447054	C	T	SNP	MYH2	ENST00000245503	human	ensembl	74_37	-1	known	missense	c.715	p.V239M	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_Ribosomal_L29,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH2	HGNC	ENSG00000125414				99	0	0	57	15	20.8333
DNAH9	0	genome.wustl.edu	37	17	11837339	11837339	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	17	11837339	11837339	C	T	SNP	DNAH9	ENST00000262442	human	ensembl	74_37	+1	known	missense	c.12440	p.A4147V	1.000	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174				90	0	0	41	13	24.0741
TVP23C	0	genome.wustl.edu	37	17	15441469	15441469	+	Splice_Site	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	17	15441469	15441469	C	T	SNP	TVP23C	ENST00000523573	human	ensembl	74_37	-1	known	splice_site	c.162-2	e5-2	0.998	-	-	-	no_errors	TVP23C	HGNC	ENSG00000175106				68	0	0	41	27	39.7059
MYO15A	0	genome.wustl.edu	37	17	18023246	18023246	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	17	18023246	18023246	G	A	SNP	MYO15A	ENST00000205890	human	ensembl	74_37	+1	known	missense	c.1132	p.V378I	0.000	NULL	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_SH3_2,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_SH3_domain,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO15A	HGNC	ENSG00000091536				104	1	0.952381	24	33	57.8947
FLII	0	genome.wustl.edu	37	17	18151293	18151293	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	17	18151293	18151293	C	T	SNP	FLII	ENST00000327031	human	ensembl	74_37	-1	known	missense	c.2245	p.V749M	1.000	smart_Villin/Gelsolin	pfam_Gelsolin_dom,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Villin/Gelsolin,prints_Villin/Gelsolin	-	no_errors	FLII	HGNC	ENSG00000177731				60	0	0	54	4	6.89655
ALDH3A1	0	genome.wustl.edu	37	17	19642929	19642929	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	17	19642929	19642929	G	T	SNP	ALDH3A1	ENST00000225740	human	ensembl	74_37	-1	known	missense	c.1008	p.F336L	0.350	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH_NAD(P)	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH_NAD(P)	-	no_errors	ALDH3A1	HGNC	ENSG00000108602				14	0	0	6	4	40
ALDH3A1	0	genome.wustl.edu	37	17	19646727	19646727	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	17	19646727	19646727	A	G	SNP	ALDH3A1	ENST00000225740	human	ensembl	74_37	-1	known	missense	c.212	p.I71T	0.821	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH_NAD(P)	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH_NAD(P)	-	no_errors	ALDH3A1	HGNC	ENSG00000108602				64	0	0	42	9	17.6471
AKAP10	0	genome.wustl.edu	37	17	19823397	19823397	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	17	19823397	19823397	G	A	SNP	AKAP10	ENST00000225737	human	ensembl	74_37	-1	known	nonsense	c.1786	p.Q596*	1.000	NULL	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam	-	no_errors	AKAP10	HGNC	ENSG00000108599				56	0	0	26	8	23.5294
SGSM2	0	genome.wustl.edu	37	17	2279115	2279115	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	17	2279115	2279115	C	T	SNP	SGSM2	ENST00000268989	human	ensembl	74_37	+1	known	silent	c.2430	p.A810	0.735	superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Run,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Run,smart_Rab-GTPase-TBC_dom,pfscan_Run,pfscan_Rab-GTPase-TBC_dom	-	no_errors	SGSM2	HGNC	ENSG00000141258				27	0	0	28	12	30
SPAG5-AS1	0	genome.wustl.edu	37	17	26943829	26943829	+	RNA	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	17	26943829	26943829	T	C	SNP	SPAG5-AS1	ENST00000414744	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.302	-	-	-	no_errors	SPAG5-AS1	HGNC	ENSG00000227543				32	0	0	10	16	61.5385
GIT1	0	genome.wustl.edu	37	17	27901773	27901773	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	17	27901773	27901773	C	T	SNP	GIT1	ENST00000394869	human	ensembl	74_37	-1	known	missense	c.2260	p.A754T	1.000	pfam_GIT1_C	pfam_GIT1_C,pfam_GIT_SHD,pfam_ArfGAP,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_ArfGAP,smart_Ankyrin_rpt,smart_GIT_SHD,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	GIT1	HGNC	ENSG00000108262				35	0	0	17	7	29.1667
RAP1GAP2	0	genome.wustl.edu	37	17	2901577	2901577	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	17	2901577	2901577	G	A	SNP	RAP1GAP2	ENST00000254695	human	ensembl	74_37	+1	known	silent	c.1107	p.T369	0.930	pfam_Rap_GAP_dom,pfscan_Rap_GAP_dom	pfam_Rap_GAP_dom,pfscan_Rap_GAP_dom	-	no_errors	RAP1GAP2	HGNC	ENSG00000132359				144	0	0	73	22	23.1579
SLFN5	0	genome.wustl.edu	37	17	33591816	33591816	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	17	33591816	33591816	A	C	SNP	SLFN5	ENST00000299977	human	ensembl	74_37	+1	known	missense	c.1753	p.T585P	0.907	pfam_DUF2075,superfamily_P-loop_NTPase	pfam_ATPase_AAA-4,pfam_DUF2075,superfamily_P-loop_NTPase	-	no_errors	SLFN5	HGNC	ENSG00000166750				180	1	0.552486	103	23	18.254
GAS2L2	0	genome.wustl.edu	37	17	34072681	34072681	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	17	34072681	34072681	A	G	SNP	GAS2L2	ENST00000254466	human	ensembl	74_37	-1	known	missense	c.1835	p.M612T	0.904	NULL	pfam_GAS2_dom,pfam_CH-domain,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_GAS2_dom,pfscan_CH-domain	-	no_errors	GAS2L2	HGNC	ENSG00000132139				112	0	0	65	4	5.7971
KRTAP1-5	0	genome.wustl.edu	37	17	39182975	39182975	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	17	39182975	39182975	G	T	SNP	KRTAP1-5	ENST00000361883	human	ensembl	74_37	-1	known	missense	c.433	p.Q145K	1.000	pfam_Keratin-assoc	pfam_Keratin-assoc	-	no_errors	KRTAP1-5	HGNC	ENSG00000221852				32	0	0	12	10	45.4545
STAT5B	0	genome.wustl.edu	37	17	40359649	40359649	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	17	40359649	40359649	G	A	SNP	STAT5B	ENST00000293328	human	ensembl	74_37	-1	known	silent	c.2004	p.Y668	0.994	smart_SH2,pfscan_SH2	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT5B	HGNC	ENSG00000173757				94	0	0	53	21	28.3784
ITGA2B	0	genome.wustl.edu	37	17	42457968	42457968	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	17	42457968	42457968	C	A	SNP	ITGA2B	ENST00000262407	human	ensembl	74_37	-1	known	missense	c.1439	p.R480I	1.000	smart_Int_alpha_beta-p,prints_Integrin_alpha	pfam_Integrin_alpha-2,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA2B	HGNC	ENSG00000005961				48	0	0	23	11	32.3529
NMT1	0	genome.wustl.edu	37	17	43182260	43182260	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	17	43182260	43182260	A	G	SNP	NMT1	ENST00000258960	human	ensembl	74_37	+1	known	missense	c.1366	p.M456V	1.000	pfam_MyristoylCoA_TrFase_C,superfamily_Acyl_CoA_acyltransferase,pirsf_MyristoylCoA_TrFase	pfam_MyristoylCoA_TrFase_C,pfam_MyristoylCoA_TrFase_N,superfamily_Acyl_CoA_acyltransferase,pirsf_MyristoylCoA_TrFase	-	no_errors	NMT1	HGNC	ENSG00000136448				72	0	0	32	8	20
LRRC37A2	0	genome.wustl.edu	37	17	44626102	44626102	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	17	44626102	44626102	C	T	SNP	LRRC37A2	ENST00000333412	human	ensembl	74_37	+1	known	silent	c.3597	p.N1199	0.001	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC37A2	HGNC	ENSG00000238083				80	0	0	51	8	13.5593
HLF	0	genome.wustl.edu	37	17	53392780	53392780	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	17	53392780	53392780	G	A	SNP	HLF	ENST00000226067	human	ensembl	74_37	+1	known	missense	c.644	p.R215H	1.000	NULL	pfam_bZIP,smart_bZIP,pfscan_bZIP	-	no_errors	HLF	HGNC	ENSG00000108924				60	0	0	21	13	38.2353
TRIM25	0	genome.wustl.edu	37	17	54981777	54981777	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	17	54981777	54981777	C	A	SNP	TRIM25	ENST00000316881	human	ensembl	74_37	-1	known	nonsense	c.766	p.E256*	0.939	NULL	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM25	HGNC	ENSG00000121060				149	0	0	91	24	20.8696
MSI2	0	genome.wustl.edu	37	17	55752431	55752431	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	17	55752431	55752431	A	G	SNP	MSI2	ENST00000284073	human	ensembl	74_37	+1	known	missense	c.889	p.N297D	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	MSI2	HGNC	ENSG00000153944				44	0	0	28	10	26.3158
DDX42	0	genome.wustl.edu	37	17	61895288	61895288	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	17	61895288	61895288	G	A	SNP	DDX42	ENST00000389924	human	ensembl	74_37	+1	known	missense	c.2347	p.G783R	0.568	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX42	HGNC	ENSG00000198231				50	0	0	34	15	30.6122
SCN4A	0	genome.wustl.edu	37	17	62020337	62020337	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	17	62020337	62020337	C	T	SNP	SCN4A	ENST00000435607	human	ensembl	74_37	-1	known	silent	c.4137	p.Q1379	1.000	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfscan_IQ_motif_EF-hand-BS,prints_Na_channel_a4su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN4A	HGNC	ENSG00000007314				120	0	0	75	20	21.0526
ERN1	0	genome.wustl.edu	37	17	62141446	62141446	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	17	62141446	62141446	C	T	SNP	ERN1	ENST00000433197	human	ensembl	74_37	-1	known	silent	c.987	p.K329	0.962	NULL	pfam_Prot_kinase_dom,pfam_KEN_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Quinonprotein_ADH-like_supfam,smart_PQQ_beta_propeller_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PUG-dom,pfscan_Prot_kinase_dom	-	no_errors	ERN1	HGNC	ENSG00000178607				27	0	0	10	5	33.3333
AXIN2	0	genome.wustl.edu	37	17	63526100	63526100	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	17	63526100	63526100	G	A	SNP	AXIN2	ENST00000307078	human	ensembl	74_37	-1	known	silent	c.2526	p.I842	0.950	smart_DIX,pfscan_DIX	pfam_DIX,pfam_RGS_dom,pfam_Axin_b-cat-bd,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_DIX,pfscan_DIX,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	AXIN2	HGNC	ENSG00000168646				92	0	0	44	20	31.25
ABCA6	0	genome.wustl.edu	37	17	67125775	67125775	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	17	67125775	67125775	G	A	SNP	ABCA6	ENST00000284425	human	ensembl	74_37	-1	known	silent	c.909	p.L303	0.886	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA6	HGNC	ENSG00000154262				82	0	0	40	13	24.5283
ABCA10	0	genome.wustl.edu	37	17	67178424	67178424	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	17	67178424	67178424	C	A	SNP	ABCA10	ENST00000269081	human	ensembl	74_37	-1	known	missense	c.2639	p.R880I	0.698	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA10	HGNC	ENSG00000154263				19	0	0	8	3	27.2727
ABCA10	0	genome.wustl.edu	37	17	67221504	67221504	+	RNA	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	17	67221504	67221504	C	A	SNP	ABCA10	ENST00000521526	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ABCA10	HGNC	ENSG00000154263				31	0	0	18	5	21.7391
KCNJ2	0	genome.wustl.edu	37	17	68171712	68171712	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	17	68171712	68171712	G	T	SNP	KCNJ2	ENST00000243457	human	ensembl	74_37	+1	known	missense	c.532	p.A178S	1.000	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,pfam_K_chnl_inward-rec_Kir_N,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir2.1	-	no_errors	KCNJ2	HGNC	ENSG00000123700				110	0	0	44	17	27.8689
CD300LF	0	genome.wustl.edu	37	17	72700850	72700850	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	17	72700850	72700850	A	G	SNP	CD300LF	ENST00000326165	human	ensembl	74_37	-1	known	missense	c.149	p.L50S	0.000	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	CD300LF	HGNC	ENSG00000186074				139	0	0	85	27	24.1071
EVPL	0	genome.wustl.edu	37	17	74004745	74004745	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	17	74004745	74004745	G	A	SNP	EVPL	ENST00000301607	human	ensembl	74_37	-1	known	missense	c.4541	p.S1514L	0.768	NULL	pfam_Plectin_repeat,superfamily_Ferritin-like_SF,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	EVPL	HGNC	ENSG00000167880				83	0	0	42	22	34.375
ST6GALNAC1	0	genome.wustl.edu	37	17	74625570	74625570	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	17	74625570	74625570	C	T	SNP	ST6GALNAC1	ENST00000156626	human	ensembl	74_37	-1	known	missense	c.355	p.A119T	0.000	NULL	pfam_Glyco_trans_29	-	no_errors	ST6GALNAC1	HGNC	ENSG00000070526				77	0	0	41	14	25.4545
ENPP7	0	genome.wustl.edu	37	17	77705066	77705066	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	17	77705066	77705066	C	T	SNP	ENPP7	ENST00000328313	human	ensembl	74_37	+1	known	silent	c.165	p.D55	0.889	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,pfam_Metalloenzyme,superfamily_Alkaline_phosphatase_core	-	no_errors	ENPP7	HGNC	ENSG00000182156				37	0	0	8	8	50
RPTOR	0	genome.wustl.edu	37	17	78865556	78865556	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	17	78865556	78865556	T	C	SNP	RPTOR	ENST00000306801	human	ensembl	74_37	+1	known	missense	c.2020	p.Y674H	1.000	superfamily_ARM-type_fold	pfam_HEAT,pfam_WD40_repeat,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom,prints_Raptor	-	no_errors	RPTOR	HGNC	ENSG00000141564				145	0	0	73	30	29.1262
RPTOR	0	genome.wustl.edu	37	17	78882649	78882649	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	17	78882649	78882649	G	T	SNP	RPTOR	ENST00000306801	human	ensembl	74_37	+1	known	missense	c.2440	p.V814F	1.000	superfamily_ARM-type_fold	pfam_HEAT,pfam_WD40_repeat,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom,prints_Raptor	-	no_errors	RPTOR	HGNC	ENSG00000141564				198	0	0	116	16	12.1212
RPTOR	0	genome.wustl.edu	37	17	78938131	78938131	+	RNA	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	17	78938131	78938131	C	T	SNP	RPTOR	ENST00000575542	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	RPTOR	HGNC	ENSG00000141564				26	0	0	16	7	30.4348
BAHCC1	0	genome.wustl.edu	37	17	79430712	79430712	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	17	79430712	79430712	C	T	SNP	BAHCC1	ENST00000307745	human	ensembl	74_37	+1	known	missense	c.7696	p.R2566C	0.986	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	RP11-1055B8.7	Clone_based_vega_gene	ENSG00000171282				25	0	0	20	8	28.5714
LRRC45	0	genome.wustl.edu	37	17	79984832	79984832	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	17	79984832	79984832	G	A	SNP	LRRC45	ENST00000306688	human	ensembl	74_37	+1	known	missense	c.719	p.R240H	0.999	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC45	HGNC	ENSG00000169683				12	0	0	8	5	38.4615
UTS2R	0	genome.wustl.edu	37	17	80332642	80332642	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	17	80332642	80332642	C	T	SNP	UTS2R	ENST00000313135	human	ensembl	74_37	+1	known	missense	c.442	p.R148C	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Urot_II_rcpt,prints_GPCR_Rhodpsn	-	no_errors	UTS2R	HGNC	ENSG00000181408				11	0	0	4	8	66.6667
FOXK2	0	genome.wustl.edu	37	17	80529613	80529613	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	17	80529613	80529613	C	T	SNP	FOXK2	ENST00000335255	human	ensembl	74_37	+1	known	missense	c.776	p.P259L	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	pfam_TF_fork_head,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,smart_TF_fork_head,pfscan_FHA_dom,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXK2	HGNC	ENSG00000141568				40	0	0	17	10	37.037
CIDEA	0	genome.wustl.edu	37	18	12274164	12274164	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	18	12274164	12274164	A	G	SNP	CIDEA	ENST00000320477	human	ensembl	74_37	+1	known	missense	c.403	p.R135G	1.000	NULL	pfam_CIDE-N_dom,smart_CIDE-N_dom,pfscan_CIDE-N_dom	-	no_errors	CIDEA	HGNC	ENSG00000176194				97	0	0	67	23	25.5556
TUBB6	0	genome.wustl.edu	37	18	12325150	12325150	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	18	12325150	12325150	G	A	SNP	TUBB6	ENST00000317702	human	ensembl	74_37	+1	known	missense	c.362	p.R121Q	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Beta_tubulin,prints_Tubulin,prints_Gamma_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Gamma_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB6	HGNC	ENSG00000176014				51	0	0	36	17	32.0755
DSG3	0	genome.wustl.edu	37	18	29044085	29044085	+	Silent	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	18	29044085	29044085	T	C	SNP	DSG3	ENST00000257189	human	ensembl	74_37	+1	known	silent	c.1011	p.Y337	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmoglein,prints_Desmosomal_cadherin	-	no_errors	DSG3	HGNC	ENSG00000134757				76	0	0	59	8	11.9403
SETBP1	0	genome.wustl.edu	37	18	42281525	42281525	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	18	42281525	42281525	A	C	SNP	SETBP1	ENST00000282030	human	ensembl	74_37	+1	known	missense	c.214	p.N72H	1.000	NULL	smart_AT_hook_DNA-bd_motif	-	no_errors	SETBP1	HGNC	ENSG00000152217				98	0	0	77	19	19.7917
SLC14A2	0	genome.wustl.edu	37	18	43253755	43253755	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	18	43253755	43253755	C	T	SNP	SLC14A2	ENST00000255226	human	ensembl	74_37	+1	known	nonsense	c.2485	p.Q829*	1.000	pfam_Urea_transporter	pfam_Urea_transporter	-	no_errors	SLC14A2	HGNC	ENSG00000132874				55	0	0	34	13	27.6596
TCEB3B	0	genome.wustl.edu	37	18	44561289	44561289	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	18	44561289	44561289	G	T	SNP	TCEB3B	ENST00000332567	human	ensembl	74_37	-1	known	missense	c.347	p.A116E	0.000	NULL	pfam_RNA_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub	-	no_errors	TCEB3B	HGNC	ENSG00000206181				64	0	0	45	10	18.1818
HDHD2	0	genome.wustl.edu	37	18	44662713	44662713	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	18	44662713	44662713	T	A	SNP	HDHD2	ENST00000300605	human	ensembl	74_37	-1	known	missense	c.98	p.K33I	1.000	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_HAD-SF_hydro_IIA_hyp2,tigrfam_HAD-SF_hydro_IIA	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_HAD-SF_hydro_IIA_hyp2,tigrfam_HAD-SF_hydro_IIA	-	no_errors	HDHD2	HGNC	ENSG00000167220				52	0	0	67	4	5.6338
CXXC1	0	genome.wustl.edu	37	18	47811481	47811481	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	18	47811481	47811481	T	C	SNP	CXXC1	ENST00000412036	human	ensembl	74_37	-1	known	missense	c.803	p.E268G	1.000	NULL	pfam_CpG-bd_C,pfam_Znf_CXXC,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	CXXC1	HGNC	ENSG00000154832				56	0	0	42	27	39.1304
MAPK4	0	genome.wustl.edu	37	18	48241512	48241512	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	18	48241512	48241512	A	G	SNP	MAPK4	ENST00000400384	human	ensembl	74_37	+1	known	missense	c.610	p.N204D	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_MAPK_ERK3/4	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_MAPK_ERK3/4	-	no_errors	MAPK4	HGNC	ENSG00000141639				52	0	0	58	15	20.5479
SMAD4	0	genome.wustl.edu	37	18	48604840	48604840	+	RNA	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	18	48604840	48604840	T	C	SNP	SMAD4	ENST00000586253	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.992	-	-	-	no_errors	SMAD4	HGNC	ENSG00000141646				57	0	0	42	29	40.8451
MEX3C	0	genome.wustl.edu	37	18	48703458	48703458	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	18	48703458	48703458	T	G	SNP	MEX3C	ENST00000406189	human	ensembl	74_37	-1	known	missense	c.1243	p.S415R	0.994	NULL	pfam_KH_dom_type_1,smart_KH_dom,smart_Znf_RING,pfscan_Znf_RING,pfscan_KH_dom_type_1	-	no_errors	MEX3C	HGNC	ENSG00000176624				55	0	0	33	4	10.8108
EPB41L3	0	genome.wustl.edu	37	18	5396200	5396200	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	18	5396200	5396200	C	A	SNP	EPB41L3	ENST00000341928	human	ensembl	74_37	-1	known	missense	c.2973	p.Q991H	1.000	pirsf_Band_41_protein,pfam_Band_4.1_C	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB_dom,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L3	HGNC	ENSG00000082397				226	0	0	156	81	34.1772
FECH	0	genome.wustl.edu	37	18	55233706	55233706	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	18	55233706	55233706	A	G	SNP	FECH	ENST00000382873	human	ensembl	74_37	-1	known	missense	c.589	p.Y197H	1.000	pfam_Ferrochelatase,tigrfam_Ferrochelatase	pfam_Ferrochelatase,tigrfam_Ferrochelatase	-	no_errors	FECH	HGNC	ENSG00000066926				80	0	0	51	33	39.2857
ATP8B1	0	genome.wustl.edu	37	18	55335683	55335683	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	18	55335683	55335683	C	G	SNP	ATP8B1	ENST00000283684	human	ensembl	74_37	-1	known	missense	c.2187	p.W729C	1.000	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP8B1	HGNC	ENSG00000081923				63	0	0	44	20	31.25
CDH20	0	genome.wustl.edu	37	18	59221533	59221533	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	18	59221533	59221533	G	A	SNP	CDH20	ENST00000262717	human	ensembl	74_37	+1	known	missense	c.2011	p.G671S	1.000	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH20	HGNC	ENSG00000101542				62	0	0	51	56	52.3364
SERPINB5	0	genome.wustl.edu	37	18	61154235	61154235	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	18	61154235	61154235	G	A	SNP	SERPINB5	ENST00000382771	human	ensembl	74_37	+1	known	silent	c.225	p.S75	0.553	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom,prints_Serpin_B9/Maspin	-	no_errors	SERPINB5	HGNC	ENSG00000206075				90	0	0	61	28	31.4607
SERPINB13	0	genome.wustl.edu	37	18	61260166	61260166	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	18	61260166	61260166	C	T	SNP	SERPINB13	ENST00000344731	human	ensembl	74_37	+1	known	nonsense	c.433	p.R145*	1.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINB13	HGNC	ENSG00000197641				116	0	0	93	20	17.6991
RTTN	0	genome.wustl.edu	37	18	67806936	67806936	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	18	67806936	67806936	A	G	SNP	RTTN	ENST00000255674	human	ensembl	74_37	-1	known	missense	c.2687	p.V896A	0.001	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	RTTN	HGNC	ENSG00000176225				169	0	0	96	61	38.8535
CNDP2	0	genome.wustl.edu	37	18	72178084	72178084	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	18	72178084	72178084	A	G	SNP	CNDP2	ENST00000324262	human	ensembl	74_37	+1	known	missense	c.493	p.M165V	1.000	pfam_Peptidase_M20,pirsf_GSH_degradosome_DUG1	pfam_Peptidase_M20,pfam_Peptidase_M20_dimer,superfamily_Peptidase_M20_dimer,pirsf_GSH_degradosome_DUG1	-	no_errors	CNDP2	HGNC	ENSG00000133313				78	0	0	65	27	29.3478
TSHZ1	0	genome.wustl.edu	37	18	72998529	72998529	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	18	72998529	72998529	C	T	SNP	TSHZ1	ENST00000580243	human	ensembl	74_37	+1	known	silent	c.1167	p.Y389	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ1	HGNC	ENSG00000179981				55	0	0	45	15	25
TSHZ1	0	genome.wustl.edu	37	18	73000349	73000349	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	18	73000349	73000349	G	A	SNP	TSHZ1	ENST00000580243	human	ensembl	74_37	+1	known	missense	c.2987	p.S996N	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ1	HGNC	ENSG00000179981				83	0	0	44	26	37.1429
ZNF236	0	genome.wustl.edu	37	18	74563868	74563868	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	18	74563868	74563868	G	A	SNP	ZNF236	ENST00000253159	human	ensembl	74_37	+1	known	silent	c.330	p.A110	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF236	HGNC	ENSG00000130856				74	0	0	51	7	12.069
CTDP1	0	genome.wustl.edu	37	18	77475147	77475147	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	18	77475147	77475147	C	T	SNP	CTDP1	ENST00000299543	human	ensembl	74_37	+1	known	silent	c.1687	p.L563	1.000	NULL	pfam_FCP1_C,pfam_NIF,superfamily_HAD-like_dom,superfamily_BRCT_dom,superfamily_Single_hybrid_motif,smart_NIF,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_NIF,tigrfam_FCP1_euk	-	no_errors	CTDP1	HGNC	ENSG00000060069				16	0	0	18	10	35.7143
ADNP2	0	genome.wustl.edu	37	18	77894088	77894088	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	18	77894088	77894088	G	A	SNP	ADNP2	ENST00000262198	human	ensembl	74_37	+1	known	silent	c.792	p.T264	0.984	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ADNP2	HGNC	ENSG00000101544				74	0	0	50	26	34.2105
ADNP2	0	genome.wustl.edu	37	18	77894778	77894778	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	18	77894778	77894778	G	A	SNP	ADNP2	ENST00000262198	human	ensembl	74_37	+1	known	silent	c.1482	p.P494	0.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ADNP2	HGNC	ENSG00000101544				65	0	0	52	17	24.6377
ZGLP1	0	genome.wustl.edu	37	19	10419251	10419251	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	10419251	10419251	C	T	SNP	ZGLP1	ENST00000403903	human	ensembl	74_37	-1	known	missense	c.107	p.R36H	0.000	NULL	pfam_Znf_GATA,smart_Znf_GATA,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	ZGLP1	HGNC	ENSG00000220201				16	0	0	16	4	20
CDC37	0	genome.wustl.edu	37	19	10506695	10506695	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	10506695	10506695	C	T	SNP	CDC37	ENST00000222005	human	ensembl	74_37	-1	known	missense	c.287	p.R96Q	1.000	pfam_Cdc37_N_dom	pfam_Cdc37_Hsp90-bd,pfam_Cdc37_N_dom,pfam_Cdc37_C	-	no_errors	CDC37	HGNC	ENSG00000105401				80	0	0	41	15	26.7857
KEAP1	0	genome.wustl.edu	37	19	10610092	10610092	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	10610092	10610092	G	A	SNP	KEAP1	ENST00000171111	human	ensembl	74_37	-1	known	silent	c.618	p.Y206	0.997	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KEAP1	HGNC	ENSG00000079999				17	0	0	14	4	22.2222
ELAVL3	0	genome.wustl.edu	37	19	11565601	11565601	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	11565601	11565601	C	T	SNP	ELAVL3	ENST00000359227	human	ensembl	74_37	-1	known	missense	c.844	p.A282T	1.000	tigrfam_ELAD_HUD_SF	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA,tigrfam_ELAD_HUD_SF	-	no_errors	ELAVL3	HGNC	ENSG00000196361				36	0	0	29	9	23.6842
ELOF1	0	genome.wustl.edu	37	19	11664600	11664600	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	11664600	11664600	G	A	SNP	ELOF1	ENST00000589171	human	ensembl	74_37	-1	putative	missense	c.218	p.T73I	1.000	NULL	pfam_Elf1	-	no_errors	ELOF1	HGNC	ENSG00000130165				63	0	0	31	14	31.1111
ZNF564	0	genome.wustl.edu	37	19	12638137	12638137	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	12638137	12638137	A	G	SNP	ZNF564	ENST00000339282	human	ensembl	74_37	-1	known	missense	c.785	p.F262S	0.111	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF564	HGNC	ENSG00000249709				76	0	0	48	18	27.2727
PKN1	0	genome.wustl.edu	37	19	14574680	14574680	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	14574680	14574680	C	T	SNP	PKN1	ENST00000342216	human	ensembl	74_37	+1	known	silent	c.1554	p.V518	0.069	NULL	pfam_Prot_kinase_dom,pfam_HR1_rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,superfamily_C2_dom,smart_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom	-	no_errors	PKN1	HGNC	ENSG00000123143				28	0	0	15	9	37.5
HSH2D	0	genome.wustl.edu	37	19	16268222	16268222	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	16268222	16268222	G	A	SNP	HSH2D	ENST00000253680	human	ensembl	74_37	+1	known	missense	c.676	p.A226T	0.000	NULL	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	-	no_errors	HSH2D	HGNC	ENSG00000196684				49	0	0	29	9	23.6842
NWD1	0	genome.wustl.edu	37	19	16918704	16918704	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	16918704	16918704	C	T	SNP	NWD1	ENST00000379808	human	ensembl	74_37	+1	known	silent	c.4044	p.P1348	0.091	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NWD1	HGNC	ENSG00000188039				146	0	0	67	25	27.1739
MYO9B	0	genome.wustl.edu	37	19	17298808	17298808	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	17298808	17298808	C	T	SNP	MYO9B	ENST00000594824	human	ensembl	74_37	+1	known	missense	c.2642	p.T881I	0.998	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO9B	HGNC	ENSG00000099331				13	0	0	10	5	33.3333
GTPBP3	0	genome.wustl.edu	37	19	17452410	17452410	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	17452410	17452410	G	T	SNP	GTPBP3	ENST00000358792	human	ensembl	74_37	+1	known	missense	c.1473	p.E491D	1.000	NULL	pfam_GTP-bd_TrmE_N,pfam_GTP_binding_domain,superfamily_P-loop_NTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	GTPBP3	HGNC	ENSG00000130299				28	0	0	24	6	20
PGPEP1	0	genome.wustl.edu	37	19	18468217	18468217	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	18468217	18468217	G	A	SNP	PGPEP1	ENST00000269919	human	ensembl	74_37	+1	known	missense	c.229	p.G77S	0.998	pfam_Peptidase_C15,superfamily_Peptidase_C15-like,pirsf_Peptidase_C15,prints_Peptidase_C15	pfam_Peptidase_C15,superfamily_Peptidase_C15-like,pirsf_Peptidase_C15,prints_Peptidase_C15	-	no_errors	PGPEP1	HGNC	ENSG00000130517				14	0	0	16	3	15.7895
LPAR2	0	genome.wustl.edu	37	19	19735185	19735185	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	19735185	19735185	G	A	SNP	LPAR2	ENST00000407877	human	ensembl	74_37	-1	known	silent	c.936	p.C312	0.020	prints_LPA_rcpt,prints_Melcrt_ACTH_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_LPA_rcpt_EDG4,prints_GPCR_Rhodpsn,prints_LPA_rcpt,prints_LPA_rcpt_EDG2,prints_Melcrt_ACTH_rcpt,prints_S1P_rcpt	-	no_errors	LPAR2	HGNC	ENSG00000064547				56	0	0	28	10	26.3158
GMIP	0	genome.wustl.edu	37	19	19747587	19747587	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	19747587	19747587	G	A	SNP	GMIP	ENST00000203556	human	ensembl	74_37	-1	known	missense	c.1256	p.P419L	0.001	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	GMIP	HGNC	ENSG00000089639				31	0	0	19	6	24
ZNF506	0	genome.wustl.edu	37	19	19906095	19906095	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	19906095	19906095	A	G	SNP	ZNF506	ENST00000443905	human	ensembl	74_37	-1	known	missense	c.601	p.Y201H	0.838	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF506	HGNC	ENSG00000081665				35	0	0	32	3	8.57143
ZNF708	0	genome.wustl.edu	37	19	21477541	21477541	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	21477541	21477541	G	A	SNP	ZNF708	ENST00000356929	human	ensembl	74_37	-1	known	missense	c.227	p.A76V	0.231	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF708	HGNC	ENSG00000182141				52	0	0	21	8	27.5862
LOC641367	0	genome.wustl.edu	37	19	21934394	21934394	+	RNA	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	21934394	21934394	G	A	SNP	LOC641367	ENST00000596710	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-420K14.6	Clone_based_vega_gene	ENSG00000269845				40	0	0	29	5	14.7059
JSRP1	0	genome.wustl.edu	37	19	2254215	2254215	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	2254215	2254215	G	A	SNP	JSRP1	ENST00000300961	human	ensembl	74_37	-1	known	missense	c.233	p.T78M	0.005	NULL	NULL	-	no_errors	JSRP1	HGNC	ENSG00000167476				94	0	0	68	21	23.5955
RN7SL860P	0	genome.wustl.edu	37	19	22784336	22784336	+	RNA	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	22784336	22784336	G	A	SNP	RN7SL860P	ENST00000473738	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	RN7SL860P	HGNC	ENSG00000240713				11	0	0	2	3	60
SLC39A3	0	genome.wustl.edu	37	19	2737214	2737214	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	2737214	2737214	G	A	SNP	SLC39A3	ENST00000269740	human	ensembl	74_37	-1	known	silent	c.42	p.G14	0.559	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A3	HGNC	ENSG00000141873				29	0	0	9	7	43.75
ZNF554	0	genome.wustl.edu	37	19	2833886	2833886	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	2833886	2833886	C	T	SNP	ZNF554	ENST00000317243	human	ensembl	74_37	+1	known	missense	c.653	p.A218V	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF554	HGNC	ENSG00000172006				80	0	0	38	13	25.4902
ZNF556	0	genome.wustl.edu	37	19	2877814	2877814	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	2877814	2877814	G	A	SNP	ZNF556	ENST00000307635	human	ensembl	74_37	+1	known	silent	c.858	p.P286	0.001	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF556	HGNC	ENSG00000172000				77	0	0	43	21	32.8125
ZNF57	0	genome.wustl.edu	37	19	2917901	2917901	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	2917901	2917901	A	G	SNP	ZNF57	ENST00000306908	human	ensembl	74_37	+1	known	missense	c.1282	p.T428A	0.030	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF57	HGNC	ENSG00000171970				100	0	0	57	4	6.55738
ZNF536	0	genome.wustl.edu	37	19	31039376	31039376	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	31039376	31039376	C	T	SNP	ZNF536	ENST00000355537	human	ensembl	74_37	+1	known	silent	c.2850	p.H950	0.076	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF536	HGNC	ENSG00000198597				236	1	0.421941	115	45	28.125
ZNF536	0	genome.wustl.edu	37	19	31039865	31039865	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	31039865	31039865	G	T	SNP	ZNF536	ENST00000355537	human	ensembl	74_37	+1	known	missense	c.3339	p.K1113N	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF536	HGNC	ENSG00000198597				45	0	0	22	10	31.25
LSM14A	0	genome.wustl.edu	37	19	34687605	34687605	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	34687605	34687605	C	T	SNP	LSM14A	ENST00000433627	human	ensembl	74_37	+1	known	missense	c.352	p.P118S	1.000	NULL	pfam_FDF_dom,superfamily_LSM_dom	-	no_errors	LSM14A	HGNC	ENSG00000257103				120	0	0	51	20	28.169
ZNF302	0	genome.wustl.edu	37	19	35174067	35174067	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	35174067	35174067	C	T	SNP	ZNF302	ENST00000423823	human	ensembl	74_37	+1	known	silent	c.138	p.S46	0.769	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF302	HGNC	ENSG00000089335				83	0	0	43	12	21.8182
ATP4A	0	genome.wustl.edu	37	19	36051500	36051500	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	36051500	36051500	G	A	SNP	ATP4A	ENST00000262623	human	ensembl	74_37	-1	known	silent	c.552	p.R184	0.775	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Na/K_IIC	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATPase_P-typ_H/K-transp_N,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP4A	HGNC	ENSG00000105675				26	0	0	20	6	23.0769
ZNF567	0	genome.wustl.edu	37	19	37210721	37210721	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	37210721	37210721	T	A	SNP	ZNF567	ENST00000536254	human	ensembl	74_37	+1	known	nonsense	c.1095	p.Y365*	0.375	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF567	HGNC	ENSG00000189042				79	0	0	28	12	30
ZNF607	0	genome.wustl.edu	37	19	38189172	38189172	+	Silent	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	38189172	38189172	T	C	SNP	ZNF607	ENST00000355202	human	ensembl	74_37	-1	known	silent	c.1860	p.K620	0.002	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF607	HGNC	ENSG00000198182				72	0	0	25	12	32.4324
SIPA1L3	0	genome.wustl.edu	37	19	38572895	38572895	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	38572895	38572895	C	T	SNP	SIPA1L3	ENST00000222345	human	ensembl	74_37	+1	known	silent	c.690	p.P230	0.004	NULL	pfam_DUF3401,pfam_Rap_GAP_dom,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L3	HGNC	ENSG00000105738				22	0	0	21	9	30
SIPA1L3	0	genome.wustl.edu	37	19	38573583	38573583	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	38573583	38573583	G	A	SNP	SIPA1L3	ENST00000222345	human	ensembl	74_37	+1	known	missense	c.1378	p.A460T	0.000	NULL	pfam_DUF3401,pfam_Rap_GAP_dom,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L3	HGNC	ENSG00000105738				19	0	0	7	7	50
DPF1	0	genome.wustl.edu	37	19	38706879	38706879	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	38706879	38706879	T	C	SNP	DPF1	ENST00000355526	human	ensembl	74_37	-1	known	missense	c.880	p.T294A	1.000	superfamily_Znf_FYVE_PHD	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_C2H2-like,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_C2H2	-	no_errors	DPF1	HGNC	ENSG00000011332				30	0	0	11	8	42.1053
CAPN12	0	genome.wustl.edu	37	19	39221806	39221806	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	39221806	39221806	C	T	SNP	CAPN12	ENST00000328867	human	ensembl	74_37	-1	known	missense	c.2015	p.R672H	0.981	NULL	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,pfscan_EF_hand_dom,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN12	HGNC	ENSG00000182472				19	0	0	12	5	29.4118
NFKBIB	0	genome.wustl.edu	37	19	39399383	39399383	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	39399383	39399383	G	A	SNP	NFKBIB	ENST00000313582	human	ensembl	74_37	+1	known	missense	c.982	p.D328N	0.999	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	NFKBIB	HGNC	ENSG00000104825				51	0	0	30	7	18.9189
IFNL3	0	genome.wustl.edu	37	19	39735101	39735101	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	39735101	39735101	G	A	SNP	IFNL3	ENST00000413851	human	ensembl	74_37	-1	known	missense	c.214	p.R72C	0.001	NULL	NULL	-	no_errors	IFNL3	HGNC	ENSG00000197110				10	0	0	9	4	30.7692
SAMD4B	0	genome.wustl.edu	37	19	39860437	39860437	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	39860437	39860437	C	T	SNP	SAMD4B	ENST00000314471	human	ensembl	74_37	+1	known	silent	c.339	p.I113	0.994	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM	-	no_errors	SAMD4B	HGNC	ENSG00000179134				42	0	0	20	9	31.0345
FCGBP	0	genome.wustl.edu	37	19	40368706	40368706	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	40368706	40368706	G	A	SNP	FCGBP	ENST00000221347	human	ensembl	74_37	-1	known	silent	c.12642	p.C4214	0.995	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920				274	2	0.724638	176	34	16.1905
ZNF546	0	genome.wustl.edu	37	19	40520949	40520949	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	40520949	40520949	G	C	SNP	ZNF546	ENST00000347077	human	ensembl	74_37	+1	known	missense	c.1772	p.S591T	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF546	HGNC	ENSG00000187187				66	0	0	28	4	12.5
SNRPA	0	genome.wustl.edu	37	19	41265406	41265406	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	41265406	41265406	G	A	SNP	SNRPA	ENST00000243563	human	ensembl	74_37	+1	known	missense	c.317	p.R106H	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SNRPA	HGNC	ENSG00000077312				47	0	0	26	15	36.5854
CREB3L3	0	genome.wustl.edu	37	19	4164623	4164623	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	4164623	4164623	C	T	SNP	CREB3L3	ENST00000078445	human	ensembl	74_37	+1	known	silent	c.700	p.L234	1.000	superfamily_TF_DNA-bd	pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	CREB3L3	HGNC	ENSG00000060566				29	0	0	19	3	13.6364
CCDC97	0	genome.wustl.edu	37	19	41822570	41822570	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	41822570	41822570	C	T	SNP	CCDC97	ENST00000269967	human	ensembl	74_37	+1	known	missense	c.328	p.R110C	1.000	NULL	pfam_DUF2052_coiled-coil	-	no_errors	CCDC97	HGNC	ENSG00000142039				27	0	0	9	3	25
MEGF8	0	genome.wustl.edu	37	19	42839311	42839311	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	42839311	42839311	G	A	SNP	MEGF8	ENST00000251268	human	ensembl	74_37	+1	known	missense	c.683	p.R228H	0.983	NULL	pfam_CUB_dom,pfam_EGF_laminin,pfam_Plexin_repeat,superfamily_Gal_Oxase/kelch_b-propeller,superfamily_CUB_dom,superfamily_Plexin-like_fold,smart_CUB_dom,smart_EG-like_dom,smart_Plexin-like_fold,smart_EGF-like_Ca-bd_dom,smart_EGF_laminin,pfscan_CUB_dom,pfscan_EG-like_dom,pfscan_EGF_laminin	-	no_errors	MEGF8	HGNC	ENSG00000105429				15	0	0	16	7	30.4348
TMIGD2	0	genome.wustl.edu	37	19	4292680	4292680	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	4292680	4292680	G	A	SNP	TMIGD2	ENST00000301272	human	ensembl	74_37	-1	known	silent	c.765	p.P255	0.000	NULL	smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	TMIGD2	HGNC	ENSG00000167664				48	0	0	23	15	39.4737
CXCL17	0	genome.wustl.edu	37	19	42937210	42937210	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	42937210	42937210	C	T	SNP	CXCL17	ENST00000601181	human	ensembl	74_37	-1	known	silent	c.180	p.P60	0.001	NULL	NULL	-	no_errors	CXCL17	HGNC	ENSG00000189377				57	0	0	20	12	37.5
CEACAM1	0	genome.wustl.edu	37	19	43015774	43015774	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	43015774	43015774	G	A	SNP	CEACAM1	ENST00000161559	human	ensembl	74_37	-1	known	silent	c.1383	p.S461	0.476	NULL	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	CEACAM1	HGNC	ENSG00000079385				69	0	0	42	10	19.2308
PSG5	0	genome.wustl.edu	37	19	43690566	43690566	+	RNA	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	43690566	43690566	C	T	SNP	PSG5	ENST00000401992	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.312	-	-	-	no_errors	PSG5	HGNC	ENSG00000204941				80	0	0	44	21	32.3077
ZNF227	0	genome.wustl.edu	37	19	44739572	44739572	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	44739572	44739572	G	T	SNP	ZNF227	ENST00000313040	human	ensembl	74_37	+1	known	missense	c.989	p.G330V	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF227	HGNC	ENSG00000131115				88	0	0	33	18	35.2941
ZNF296	0	genome.wustl.edu	37	19	45574990	45574990	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	45574990	45574990	G	A	SNP	ZNF296	ENST00000303809	human	ensembl	74_37	-1	known	missense	c.1297	p.R433C	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF296	HGNC	ENSG00000170684				39	0	0	27	11	28.9474
FOSB	0	genome.wustl.edu	37	19	45974040	45974040	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	45974040	45974040	G	A	SNP	FOSB	ENST00000353609	human	ensembl	74_37	+1	known	missense	c.280	p.V94I	0.854	NULL	pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP,prints_Leuzip_Fos	-	no_errors	FOSB	HGNC	ENSG00000125740				56	0	0	52	14	21.2121
KPTN	0	genome.wustl.edu	37	19	47984241	47984241	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	47984241	47984241	C	T	SNP	KPTN	ENST00000338134	human	ensembl	74_37	-1	known	missense	c.499	p.D167N	1.000	NULL	NULL	-	no_errors	KPTN	HGNC	ENSG00000118162				14	0	0	8	5	38.4615
CRX	0	genome.wustl.edu	37	19	48343102	48343102	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	48343102	48343102	G	A	SNP	CRX	ENST00000221996	human	ensembl	74_37	+1	known	missense	c.778	p.A260T	0.899	NULL	pfam_Homeobox_dom,pfam_Otx_TF_C,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	CRX	HGNC	ENSG00000105392				126	1	0.787402	62	24	27.907
TMEM143	0	genome.wustl.edu	37	19	48845798	48845798	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	48845798	48845798	G	A	SNP	TMEM143	ENST00000293261	human	ensembl	74_37	-1	known	missense	c.964	p.R322W	1.000	pfam_DUF3754	pfam_DUF3754	-	no_errors	TMEM143	HGNC	ENSG00000161558				13	0	0	3	4	57.1429
TEAD2	0	genome.wustl.edu	37	19	49863216	49863216	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	49863216	49863216	C	T	SNP	TEAD2	ENST00000311227	human	ensembl	74_37	-1	known	silent	c.117	p.P39	0.030	pfam_TEA/ATTS,smart_TEA/ATTS,pirsf_TEF	pfam_TEA/ATTS,smart_TEA/ATTS,pirsf_TEF,pfscan_TEA/ATTS,prints_TEA/ATTS	-	no_errors	TEAD2	HGNC	ENSG00000074219				30	0	0	11	9	45
SIGLEC9	0	genome.wustl.edu	37	19	51631709	51631709	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	51631709	51631709	C	T	SNP	SIGLEC9	ENST00000440804	human	ensembl	74_37	+1	known	missense	c.1145	p.A382V	0.000	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	SIGLEC9	HGNC	ENSG00000129450				71	0	0	37	16	30.1887
ZNF610	0	genome.wustl.edu	37	19	52857623	52857623	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	52857623	52857623	G	A	SNP	ZNF610	ENST00000321287	human	ensembl	74_37	+1	known	missense	c.310	p.V104M	0.044	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF610	HGNC	ENSG00000167554				49	0	0	28	7	20
ZNF600	0	genome.wustl.edu	37	19	53269380	53269380	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	53269380	53269380	G	A	SNP	ZNF600	ENST00000338230	human	ensembl	74_37	-1	known	silent	c.1629	p.C543	0.014	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF600	HGNC	ENSG00000189190				269	0	0	115	45	28.125
CACNG6	0	genome.wustl.edu	37	19	54515275	54515275	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	54515275	54515275	G	A	SNP	CACNG6	ENST00000252729	human	ensembl	74_37	+1	known	silent	c.615	p.P205	0.002	NULL	prints_VDCC_g6su,prints_VDCC_gsu,prints_Claudin	-	no_errors	CACNG6	HGNC	ENSG00000130433				21	0	0	12	9	42.8571
LILRP2	0	genome.wustl.edu	37	19	55221587	55221587	+	RNA	SNP	T	T	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	55221587	55221587	T	G	SNP	LILRP2	ENST00000413439	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	LILRP2	HGNC	ENSG00000170858				33	0	0	28	7	20
NLRP7	0	genome.wustl.edu	37	19	55450708	55450708	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	55450708	55450708	G	A	SNP	NLRP7	ENST00000446217	human	ensembl	74_37	-1	known	silent	c.1563	p.H521	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP7	HGNC	ENSG00000167634				75	0	0	31	11	26.1905
ZNF628	0	genome.wustl.edu	37	19	55994085	55994085	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	55994085	55994085	G	A	SNP	ZNF628	ENST00000598519	human	ensembl	74_37	+1	known	missense	c.1525	p.A509T	0.992	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF628	HGNC	ENSG00000197483				18	0	0	13	4	23.5294
LONP1	0	genome.wustl.edu	37	19	5693672	5693672	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	5693672	5693672	A	G	SNP	LONP1	ENST00000360614	human	ensembl	74_37	-1	known	missense	c.2429	p.M810T	1.000	pfam_Pept_S16_C,superfamily_Ribosomal_S5_D2-typ_fold,tigrfam_Lon_bac/euk-typ	pfam_Pept_S16_C,pfam_Pept_S16_N,pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-2,pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_Prk_AAA_dom,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_P-loop_NTPase,superfamily_PUA-like_domain,smart_Pept_S16_N,smart_AAA+_ATPase,tigrfam_Lon_bac/euk-typ	-	no_errors	LONP1	HGNC	ENSG00000196365				28	0	0	18	6	25
SLC25A23	0	genome.wustl.edu	37	19	6452348	6452348	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	6452348	6452348	G	A	SNP	SLC25A23	ENST00000264088	human	ensembl	74_37	-1	known	missense	c.1187	p.A396V	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A23	HGNC	ENSG00000125648				20	0	0	7	3	30
SH2D3A	0	genome.wustl.edu	37	19	6760727	6760727	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	6760727	6760727	A	C	SNP	SH2D3A	ENST00000245908	human	ensembl	74_37	-1	known	missense	c.341	p.V114G	0.954	pfscan_SH2	pfam_SH2,pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_SH2,smart_RasGRF_CDC25,pfscan_SH2,prints_SH2	-	no_errors	SH2D3A	HGNC	ENSG00000125731				29	0	0	13	3	18.75
XAB2	0	genome.wustl.edu	37	19	7685435	7685435	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	7685435	7685435	G	A	SNP	XAB2	ENST00000358368	human	ensembl	74_37	-1	known	missense	c.2092	p.R698W	0.836	smart_HAT	smart_HAT,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	XAB2	HGNC	ENSG00000076924				18	0	0	16	8	33.3333
CD320	0	genome.wustl.edu	37	19	8367483	8367483	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	8367483	8367483	A	G	SNP	CD320	ENST00000301458	human	ensembl	74_37	-1	known	missense	c.713	p.L238P	0.115	NULL	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	CD320	HGNC	ENSG00000167775				36	0	0	32	5	13.5135
CFD	0	genome.wustl.edu	37	19	861776	861776	+	Silent	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	861776	861776	A	G	SNP	CFD	ENST00000327726	human	ensembl	74_37	+1	known	silent	c.435	p.G145	0.988	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Peptidase_S1	-	no_errors	CFD	HGNC	ENSG00000197766				8	0	0	12	3	20
ZNF558	0	genome.wustl.edu	37	19	8932736	8932736	+	Silent	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	8932736	8932736	T	C	SNP	ZNF558	ENST00000301475	human	ensembl	74_37	-1	known	silent	c.63	p.Q21	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF558	HGNC	ENSG00000167785				92	0	0	72	19	20.8791
MUC16	0	genome.wustl.edu	37	19	9087343	9087343	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	9087343	9087343	G	A	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.4472	p.P1491L	0.005	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				240	0	0	115	39	25.3247
ZNF266	0	genome.wustl.edu	37	19	9524026	9524026	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	9524026	9524026	G	A	SNP	ZNF266	ENST00000361151	human	ensembl	74_37	-1	known	silent	c.1575	p.C525	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF266	HGNC	ENSG00000174652				66	0	0	32	18	36
OLFM2	0	genome.wustl.edu	37	19	9968487	9968487	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	9968487	9968487	G	A	SNP	OLFM2	ENST00000264833	human	ensembl	74_37	-1	known	silent	c.264	p.R88	0.832	pfam_Noelin-1	pfam_Olfac-like,pfam_Noelin-1,superfamily_Quinonprotein_ADH-like_supfam,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFM2	HGNC	ENSG00000105088				40	0	0	14	14	50
GRHL1	0	genome.wustl.edu	37	2	10140759	10140759	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	10140759	10140759	A	G	SNP	GRHL1	ENST00000324907	human	ensembl	74_37	+1	known	missense	c.1781	p.Y594C	1.000	NULL	pfam_CP2	-	no_errors	GRHL1	HGNC	ENSG00000134317				248	0	0	166	50	23.1481
LIMS1	0	genome.wustl.edu	37	2	109300406	109300406	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	109300406	109300406	A	C	SNP	LIMS1	ENST00000542845	human	ensembl	74_37	+1	known	missense	c.1115	p.E372A	1.000	pirsf_PINCH,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pirsf_PINCH,pfscan_Znf_LIM	-	no_errors	LIMS1	HGNC	ENSG00000169756				46	0	0	32	4	11.1111
GREB1	0	genome.wustl.edu	37	2	11750919	11750919	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	11750919	11750919	G	A	SNP	GREB1	ENST00000234142	human	ensembl	74_37	+1	known	silent	c.2772	p.T924	0.928	NULL	superfamily_P-loop_NTPase	-	no_errors	GREB1	HGNC	ENSG00000196208				39	0	0	27	11	28.9474
PTPN4	0	genome.wustl.edu	37	2	120677688	120677688	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	120677688	120677688	A	G	SNP	PTPN4	ENST00000263708	human	ensembl	74_37	+1	known	missense	c.872	p.Y291C	1.000	pfam_FERM_PH-like_C,pirsf_Tyr_Pase_non-rcpt_typ-3/4,pfscan_FERM_domain	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,pfam_PDZ,pfam_FERM-adjacent,superfamily_FERM_central,superfamily_PDZ,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-3/4,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	PTPN4	HGNC	ENSG00000088179				87	0	0	37	23	38.3333
PTPN18	0	genome.wustl.edu	37	2	131116512	131116512	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	131116512	131116512	A	G	SNP	PTPN18	ENST00000175756	human	ensembl	74_37	+1	known	missense	c.166	p.N56D	0.120	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN18	HGNC	ENSG00000072135				41	0	0	36	13	26.5306
GPR39	0	genome.wustl.edu	37	2	133402818	133402818	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	133402818	133402818	A	G	SNP	GPR39	ENST00000329321	human	ensembl	74_37	+1	known	missense	c.1001	p.Y334C	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR39	HGNC	ENSG00000183840				73	0	0	17	39	69.6429
LRP1B	0	genome.wustl.edu	37	2	141816614	141816614	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	141816614	141816614	G	T	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.1246	p.L416I	1.000	pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,smart_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				82	0	0	23	29	55.7692
FMNL2	0	genome.wustl.edu	37	2	153399319	153399319	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	153399319	153399319	G	A	SNP	FMNL2	ENST00000288670	human	ensembl	74_37	+1	known	missense	c.268	p.A90T	1.000	pfam_GTPase-bd,superfamily_ARM-type_fold	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,smart_FH2_Formin,prints_Wilms_tumour	-	no_errors	FMNL2	HGNC	ENSG00000157827				78	0	0	38	11	22.449
TANC1	0	genome.wustl.edu	37	2	160027037	160027037	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	160027037	160027037	C	T	SNP	TANC1	ENST00000263635	human	ensembl	74_37	+1	known	nonsense	c.1072	p.R358*	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC1	HGNC	ENSG00000115183				59	0	0	21	30	58.8235
CSRNP3	0	genome.wustl.edu	37	2	166535659	166535659	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	166535659	166535659	A	G	SNP	CSRNP3	ENST00000314499	human	ensembl	74_37	+1	known	missense	c.1154	p.D385G	0.101	NULL	prints_Cys/Ser-rich_nuc_prot	-	no_errors	CSRNP3	HGNC	ENSG00000178662				58	0	0	43	10	18.8679
GALNT3	0	genome.wustl.edu	37	2	166605292	166605292	+	Silent	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	166605292	166605292	T	C	SNP	GALNT3	ENST00000392701	human	ensembl	74_37	-1	known	silent	c.1901	p.*634	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT3	HGNC	ENSG00000115339				26	0	0	19	2	9.52381
XIRP2	0	genome.wustl.edu	37	2	168102239	168102239	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	168102239	168102239	A	C	SNP	XIRP2	ENST00000295237	human	ensembl	74_37	+1	known	missense	c.4337	p.K1446T	1.000	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP2	HGNC	ENSG00000163092				68	0	0	30	9	23.0769
XIRP2	0	genome.wustl.edu	37	2	168102522	168102522	+	Silent	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	168102522	168102522	T	C	SNP	XIRP2	ENST00000295237	human	ensembl	74_37	+1	known	silent	c.4620	p.T1540	0.000	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP2	HGNC	ENSG00000163092				93	0	0	29	37	56.0606
MYO3B	0	genome.wustl.edu	37	2	171376034	171376034	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	171376034	171376034	G	A	SNP	MYO3B	ENST00000334231	human	ensembl	74_37	+1	known	missense	c.3586	p.V1196I	0.000	NULL	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3B	HGNC	ENSG00000071909				66	0	0	42	5	10.6383
RAPGEF4	0	genome.wustl.edu	37	2	173852994	173852994	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	173852994	173852994	C	T	SNP	RAPGEF4	ENST00000397081	human	ensembl	74_37	+1	known	silent	c.1221	p.Y407	1.000	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_cAMP/cGMP_kin	pfam_RasGRF_CDC25,pfam_cNMP-bd_dom,pfam_DEP_dom,pfam_Ras-like_Gua-exchang_fac_N,pfam_Ras-assoc,superfamily_Ras_GEF_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_DEP_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_DEP_dom,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N,prints_cAMP/cGMP_kin	-	no_errors	RAPGEF4	HGNC	ENSG00000091428				67	0	0	17	34	66.6667
CDCA7	0	genome.wustl.edu	37	2	174228609	174228609	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	174228609	174228609	C	A	SNP	CDCA7	ENST00000306721	human	ensembl	74_37	+1	known	missense	c.685	p.P229T	0.712	NULL	pfam_Znf-4CXXC_R1	-	no_errors	CDCA7	HGNC	ENSG00000144354				137	0	0	58	59	50.4274
HOXD11	0	genome.wustl.edu	37	2	176972255	176972255	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	176972255	176972255	G	A	SNP	HOXD11	ENST00000249504	human	ensembl	74_37	+1	known	missense	c.172	p.V58M	1.000	pfam_DUF3528	pfam_DUF3528,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXD11	HGNC	ENSG00000128713				18	0	0	11	13	54.1667
TTC30A	0	genome.wustl.edu	37	2	178481542	178481542	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	178481542	178481542	T	C	SNP	TTC30A	ENST00000355689	human	ensembl	74_37	-1	known	missense	c.1888	p.I630V	1.000	NULL	smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC30A	HGNC	ENSG00000197557				137	0	0	67	53	44.1667
TTN	0	genome.wustl.edu	37	2	179396464	179396464	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	179396464	179396464	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.97174	p.R32392C	0.681	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				105	0	0	65	25	27.7778
TTN	0	genome.wustl.edu	37	2	179474047	179474047	+	Silent	SNP	T	T	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	179474047	179474047	T	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.44286	p.G14762	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				55	0	0	20	9	31.0345
TTN	0	genome.wustl.edu	37	2	179594261	179594261	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	179594261	179594261	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.14890	p.V4964M	0.986	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				110	0	0	66	18	21.4286
ZNF804A	0	genome.wustl.edu	37	2	185801763	185801763	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	185801763	185801763	G	A	SNP	ZNF804A	ENST00000302277	human	ensembl	74_37	+1	known	missense	c.1640	p.R547K	0.000	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804A	HGNC	ENSG00000170396				42	0	0	35	6	14.6341
FAM126B	0	genome.wustl.edu	37	2	201846082	201846082	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	201846082	201846082	C	T	SNP	FAM126B	ENST00000418596	human	ensembl	74_37	-1	known	missense	c.1504	p.E502K	1.000	NULL	pfam_Hyccin	-	no_errors	FAM126B	HGNC	ENSG00000155744				81	0	0	43	7	14
BMPR2	0	genome.wustl.edu	37	2	203420873	203420873	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	203420873	203420873	A	G	SNP	BMPR2	ENST00000374580	human	ensembl	74_37	+1	known	missense	c.2485	p.T829A	0.015	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	BMPR2	HGNC	ENSG00000204217				71	0	0	34	12	26.087
NRP2	0	genome.wustl.edu	37	2	206592721	206592721	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	206592721	206592721	G	A	SNP	NRP2	ENST00000360409	human	ensembl	74_37	+1	known	missense	c.1097	p.S366N	1.000	pirsf_Neuropilin,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pirsf_Neuropilin,pfam_CUB_dom,pfam_Coagulation_fac_5/8-C_type_dom,pfam_MAM_dom,pfam_Neuropilin1_C,superfamily_Galactose-bd-like,superfamily_CUB_dom,superfamily_ConA-like_lec_gl_sf,smart_CUB_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_MAM_dom,prints_MAM_dom,pfscan_CUB_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_MAM_dom	-	no_errors	NRP2	HGNC	ENSG00000118257				59	0	0	23	10	30.303
ZDBF2	0	genome.wustl.edu	37	2	207171007	207171007	+	Silent	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	207171007	207171007	T	C	SNP	ZDBF2	ENST00000374423	human	ensembl	74_37	+1	known	silent	c.1755	p.C585	0.060	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186				56	0	0	23	6	20.6897
ZDBF2	0	genome.wustl.edu	37	2	207171142	207171142	+	Silent	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	207171142	207171142	C	A	SNP	ZDBF2	ENST00000374423	human	ensembl	74_37	+1	known	silent	c.1890	p.V630	0.000	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186				110	0	0	52	32	38.0952
MAP2	0	genome.wustl.edu	37	2	210518129	210518129	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	210518129	210518129	C	T	SNP	MAP2	ENST00000360351	human	ensembl	74_37	+1	known	silent	c.235	p.L79	1.000	NULL	pfam_MAP2_projctn,pfam_MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018				96	0	0	22	34	60.7143
ACADL	0	genome.wustl.edu	37	2	211082788	211082788	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	211082788	211082788	T	C	SNP	ACADL	ENST00000233710	human	ensembl	74_37	-1	known	missense	c.272	p.E91G	1.000	pfam_AcylCoA_DH/ox_N,superfamily_AcylCoA_DH/oxidase_NM_dom	pfam_AcylCo_DH/oxidase_C,pfam_AcylCoA_DH/ox_N,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_DH_2_C,superfamily_AcylCoA_DH/oxidase_NM_dom,superfamily_AcylCo_DH/oxidase_C	-	no_errors	ACADL	HGNC	ENSG00000115361				52	0	0	25	10	28.5714
ERBB4	0	genome.wustl.edu	37	2	212288922	212288922	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	212288922	212288922	G	A	SNP	ERBB4	ENST00000342788	human	ensembl	74_37	-1	known	missense	c.2824	p.P942S	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB4	HGNC	ENSG00000178568				72	0	0	50	11	18.0328
FN1	0	genome.wustl.edu	37	2	216253000	216253000	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	216253000	216253000	A	G	SNP	FN1	ENST00000354785	human	ensembl	74_37	-1	known	missense	c.4277	p.V1426A	0.995	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibronectin_type1,pfam_FN_type2_col-bd,superfamily_Kringle-like,superfamily_Fibronectin_type3,smart_Fibronectin_type1,smart_FN_type2_col-bd,smart_Fibronectin_type3,pfscan_Fibronectin_type1,pfscan_FN_type2_col-bd,pfscan_Fibronectin_type3	-	no_errors	FN1	HGNC	ENSG00000115414				66	0	0	54	8	12.9032
CXCR2P1	0	genome.wustl.edu	37	2	218925669	218925669	+	RNA	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	218925669	218925669	G	A	SNP	CXCR2P1	ENST00000439871	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.081	-	-	-	no_errors	CXCR2P1	HGNC	ENSG00000229754				32	0	0	19	5	20.8333
PRKAG3	0	genome.wustl.edu	37	2	219689020	219689020	+	Silent	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	219689020	219689020	T	C	SNP	PRKAG3	ENST00000233944	human	ensembl	74_37	-1	known	silent	c.1278	p.L426	0.031	pfam_CBS_dom	pfam_CBS_dom,smart_CBS_dom	-	no_errors	PRKAG3	HGNC	ENSG00000115592				33	0	0	21	6	22.2222
SPEG	0	genome.wustl.edu	37	2	220333707	220333707	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	220333707	220333707	G	A	SNP	SPEG	ENST00000312358	human	ensembl	74_37	+1	novel	missense	c.3428	p.G1143D	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	SPEG	HGNC	ENSG00000072195				37	0	0	17	6	26.087
SPEG	0	genome.wustl.edu	37	2	220353849	220353849	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	220353849	220353849	C	T	SNP	SPEG	ENST00000312358	human	ensembl	74_37	+1	novel	silent	c.8223	p.G2741	0.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	SPEG	HGNC	ENSG00000072195				81	0	0	45	9	16.6667
FARSB	0	genome.wustl.edu	37	2	223478636	223478636	+	Silent	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	223478636	223478636	A	G	SNP	FARSB	ENST00000281828	human	ensembl	74_37	-1	known	silent	c.1356	p.T452	1.000	tigrfam_Phe-tRNA-synth_IIc_bsu_arc	pfam_B3/B4_tRNA-bd,pfam_tRNA_synthase_B5-dom,superfamily_DNA-bd_dom_put,superfamily_Phe-tRNA_synthase_B3/B4,smart_B3/B4_tRNA-bd,smart_tRNA_synthase_B5-dom,tigrfam_Phe-tRNA-synth_IIc_bsu_arc	-	no_errors	FARSB	HGNC	ENSG00000116120				68	0	0	51	11	17.7419
CUL3	0	genome.wustl.edu	37	2	225376238	225376238	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	225376238	225376238	G	A	SNP	CUL3	ENST00000264414	human	ensembl	74_37	-1	known	missense	c.716	p.A239V	1.000	pfam_Cullin_N,superfamily_Cullin_repeat-like_dom	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL3	HGNC	ENSG00000036257				69	0	0	54	4	6.89655
COL4A4	0	genome.wustl.edu	37	2	227892635	227892635	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	227892635	227892635	C	A	SNP	COL4A4	ENST00000396625	human	ensembl	74_37	-1	known	missense	c.4064	p.G1355V	0.809	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A4	HGNC	ENSG00000081052				53	0	0	12	12	50
SP110	0	genome.wustl.edu	37	2	231042314	231042314	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	231042314	231042314	G	A	SNP	SP110	ENST00000258381	human	ensembl	74_37	-1	known	silent	c.1530	p.N510	0.000	pfam_SAND_dom,superfamily_SAND_dom-like,smart_SAND_dom,pfscan_SAND_dom	pfam_Sp100,pfam_SAND_dom,superfamily_SAND_dom-like,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_SAND_dom,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_SAND_dom	-	no_errors	SP110	HGNC	ENSG00000135899				242	0	0	140	39	21.7877
ALPP	0	genome.wustl.edu	37	2	233243931	233243931	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	233243931	233243931	C	T	SNP	ALPP	ENST00000392027	human	ensembl	74_37	+1	known	missense	c.215	p.T72I	0.979	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase,prints_Alkaline_phosphatase	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase,prints_Alkaline_phosphatase	-	no_errors	ALPP	HGNC	ENSG00000163283				72	0	0	47	12	20.339
ALPP	0	genome.wustl.edu	37	2	233245422	233245422	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	233245422	233245422	C	T	SNP	ALPP	ENST00000392027	human	ensembl	74_37	+1	known	missense	c.955	p.R319C	0.090	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase,prints_Alkaline_phosphatase	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase,prints_Alkaline_phosphatase	-	no_errors	ALPP	HGNC	ENSG00000163283				49	0	0	61	6	8.95522
GIGYF2	0	genome.wustl.edu	37	2	233671202	233671202	+	Silent	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	233671202	233671202	T	C	SNP	GIGYF2	ENST00000373566	human	ensembl	74_37	+1	known	silent	c.1707	p.G569	1.000	pfam_GYF,superfamily_GYF,smart_GYF,pfscan_GYF	pfam_GYF,superfamily_GYF,smart_GYF,pfscan_GYF	-	no_errors	GIGYF2	HGNC	ENSG00000204120				112	1	0.884956	95	18	15.9292
COL6A3	0	genome.wustl.edu	37	2	238289897	238289897	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	238289897	238289897	C	T	SNP	COL6A3	ENST00000295550	human	ensembl	74_37	-1	known	missense	c.1558	p.G520S	0.998	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359				111	0	0	39	35	47.2973
ANKMY1	0	genome.wustl.edu	37	2	241496621	241496621	+	Silent	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	241496621	241496621	A	G	SNP	ANKMY1	ENST00000361678	human	ensembl	74_37	-1	known	silent	c.132	p.A44	0.000	NULL	pfam_MORN,pfam_Znf_MYND,superfamily_Ankyrin_rpt-contain_dom,smart_MORN,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Znf_MYND	-	no_errors	ANKMY1	HGNC	ENSG00000144504				36	0	0	18	17	48.5714
RNPEPL1	0	genome.wustl.edu	37	2	241516115	241516115	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	241516115	241516115	C	T	SNP	RNPEPL1	ENST00000270357	human	ensembl	74_37	+1	known	silent	c.981	p.S327	0.999	pfam_Peptidase_M1_C,superfamily_ARM-type_fold	pfam_Peptidase_M1_C,pfam_Peptidase_M1_N,superfamily_ARM-type_fold,prints_Peptidase_M1_N	-	no_errors	RNPEPL1	HGNC	ENSG00000142327				51	0	0	25	23	47.9167
AQP12B	0	genome.wustl.edu	37	2	241622123	241622123	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	241622123	241622123	C	T	SNP	AQP12B	ENST00000407834	human	ensembl	74_37	-1	known	silent	c.132	p.A44	0.751	superfamily_Aquaporin-like,pirsf_Aquaporin_11/12	pfam_MIP,superfamily_Aquaporin-like,pirsf_Aquaporin_11/12,prints_Aquaporin_12,prints_MIP	-	no_errors	AQP12B	HGNC	ENSG00000185176				20	0	0	10	7	41.1765
HDLBP	0	genome.wustl.edu	37	2	242187691	242187691	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	242187691	242187691	G	C	SNP	HDLBP	ENST00000310931	human	ensembl	74_37	-1	known	missense	c.1585	p.R529G	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	HDLBP	HGNC	ENSG00000115677				105	0	0	79	8	9.1954
MFSD2B	0	genome.wustl.edu	37	2	24247037	24247037	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	24247037	24247037	C	T	SNP	MFSD2B	ENST00000338315	human	ensembl	74_37	+1	known	silent	c.1386	p.G462	0.015	superfamily_MFS_dom_general_subst_transpt	superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD2B	HGNC	ENSG00000205639				20	0	0	4	7	63.6364
CXXC11	0	genome.wustl.edu	37	2	242814493	242814493	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	242814493	242814493	G	A	SNP	CXXC11	ENST00000343216	human	ensembl	74_37	+1	known	silent	c.786	p.P262	0.002	NULL	NULL	-	no_errors	CXXC11	HGNC	ENSG00000188011				30	0	0	24	9	27.2727
ITSN2	0	genome.wustl.edu	37	2	24483988	24483988	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	24483988	24483988	G	T	SNP	ITSN2	ENST00000355123	human	ensembl	74_37	-1	known	missense	c.2669	p.P890H	1.000	superfamily_SH3_domain	pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,pfam_C2_dom,superfamily_DH-domain,superfamily_C2_dom,superfamily_SH3_domain,smart_EPS15_homology,smart_EF_hand_dom,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_dom,pfscan_EF_hand_dom,pfscan_EPS15_homology,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain,prints_p67phox	-	no_errors	ITSN2	HGNC	ENSG00000198399				54	0	0	35	12	25.5319
OTOF	0	genome.wustl.edu	37	2	26683555	26683555	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	26683555	26683555	C	A	SNP	OTOF	ENST00000272371	human	ensembl	74_37	-1	known	missense	c.5773	p.G1925C	1.000	NULL	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	OTOF	HGNC	ENSG00000115155				25	0	0	13	13	50
EMILIN1	0	genome.wustl.edu	37	2	27305118	27305118	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	27305118	27305118	G	A	SNP	EMILIN1	ENST00000380320	human	ensembl	74_37	+1	known	missense	c.679	p.A227T	0.856	NULL	pfam_EMI_domain,pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,pfscan_EMI_domain	-	no_errors	EMILIN1	HGNC	ENSG00000138080				19	0	0	14	4	22.2222
IFT172	0	genome.wustl.edu	37	2	27683894	27683894	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	27683894	27683894	C	T	SNP	IFT172	ENST00000260570	human	ensembl	74_37	-1	known	missense	c.2509	p.A837T	0.998	superfamily_ARM-type_fold	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat	-	no_errors	IFT172	HGNC	ENSG00000138002				122	1	0.813008	57	26	31.3253
XDH	0	genome.wustl.edu	37	2	31560626	31560626	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	31560626	31560626	C	T	SNP	XDH	ENST00000379416	human	ensembl	74_37	-1	known	missense	c.3832	p.A1278T	1.000	superfamily_AldOxase/xan_DH_Mopterin-bd,pirsf_Ald_Oxase/xanthine_DH	pfam_AldOxase/xan_DH_Mopterin-bd,pfam_Mopterin_DH_FAD-bd,pfam_Ald_Oxase/Xan_DH_a/b,pfam_2Fe-2S-bd,pfam_CO_DH_flav_C,pfam_2Fe-2S_ferredoxin-type,superfamily_AldOxase/xan_DH_Mopterin-bd,superfamily_FAD-bd_2,superfamily_Ald_Oxase/Xan_DH_a/b,superfamily_2Fe-2S-bd,superfamily_CO_DH_flav_C,superfamily_2Fe-2S_ferredoxin-type,pirsf_Ald_Oxase/xanthine_DH,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Xanthine_DH_ssu	-	no_errors	XDH	HGNC	ENSG00000158125				45	0	0	27	12	30.7692
LTBP1	0	genome.wustl.edu	37	2	33623607	33623607	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	33623607	33623607	G	A	SNP	LTBP1	ENST00000354476	human	ensembl	74_37	+1	known	missense	c.5164	p.E1722K	1.000	NULL	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	LTBP1	HGNC	ENSG00000049323				69	0	0	22	36	62.069
CRIM1	0	genome.wustl.edu	37	2	36740836	36740836	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	36740836	36740836	C	T	SNP	CRIM1	ENST00000280527	human	ensembl	74_37	+1	known	silent	c.1918	p.L640	1.000	pfam_VWF_C,smart_VWF_C,pfscan_VWF_C	pfam_VWF_C,pfam_Antistasin-like,superfamily_Hirudin/antistatin,smart_IGFBP-like,smart_VWC_out,smart_VWF_C,pfscan_VWF_C	-	no_errors	CRIM1	HGNC	ENSG00000150938				42	0	0	24	10	29.4118
CDC42EP3	0	genome.wustl.edu	37	2	37873728	37873728	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	37873728	37873728	C	A	SNP	CDC42EP3	ENST00000295324	human	ensembl	74_37	-1	known	missense	c.3	p.M1I	1.000	NULL	pfam_CRIB_dom,smart_CRIB_dom,pfscan_CRIB_dom	-	no_errors	CDC42EP3	HGNC	ENSG00000163171				131	0	0	86	26	23.2143
SIX3	0	genome.wustl.edu	37	2	45169338	45169338	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	45169338	45169338	G	A	SNP	SIX3	ENST00000260653	human	ensembl	74_37	+1	known	missense	c.95	p.S32N	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	SIX3	HGNC	ENSG00000138083				50	0	0	25	10	28.5714
MSH2	0	genome.wustl.edu	37	2	47705414	47705414	+	Silent	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	47705414	47705414	T	C	SNP	MSH2	ENST00000233146	human	ensembl	74_37	+1	known	silent	c.2214	p.S738	0.954	pfam_DNA_mismatch_repair_MutS_C,superfamily_P-loop_NTPase,smart_DNA_mismatch_repair_MutS_C,pirsf_DNA_mismatch_repair_MSH2	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mmatch_repair_MutS_con_dom,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_P-loop_NTPase,superfamily_DNA_mmatch_repair_MutS_con_dom,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C,pirsf_DNA_mismatch_repair_MSH2	-	no_errors	MSH2	HGNC	ENSG00000095002				93	0	0	57	18	24
EML6	0	genome.wustl.edu	37	2	55155778	55155778	+	Silent	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	55155778	55155778	T	C	SNP	EML6	ENST00000356458	human	ensembl	74_37	+1	novel	silent	c.3894	p.V1298	0.962	NULL	pfam_WD40_repeat,pfam_HELP,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML6	HGNC	ENSG00000214595				12	0	0	5	4	44.4444
RTN4	0	genome.wustl.edu	37	2	55252334	55252334	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	55252334	55252334	T	C	SNP	RTN4	ENST00000337526	human	ensembl	74_37	-1	known	missense	c.2901	p.I967M	0.905	NULL	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN4	HGNC	ENSG00000115310				81	0	0	55	20	26.6667
SOX11	0	genome.wustl.edu	37	2	5833022	5833022	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	5833022	5833022	A	G	SNP	SOX11	ENST00000322002	human	ensembl	74_37	+1	known	missense	c.169	p.M57V	1.000	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pirsf_SOX-12/11/4a,pfscan_HMG_box_dom	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pirsf_SOX-12/11/4a,pfscan_HMG_box_dom	-	no_errors	SOX11	HGNC	ENSG00000176887				26	0	0	11	6	35.2941
PELI1	0	genome.wustl.edu	37	2	64322041	64322041	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	64322041	64322041	G	A	SNP	PELI1	ENST00000358912	human	ensembl	74_37	-1	known	missense	c.1052	p.A351V	1.000	pfam_Pellino_fam	pfam_Pellino_fam	-	no_errors	PELI1	HGNC	ENSG00000197329				145	0	0	82	22	21.1538
CEP68	0	genome.wustl.edu	37	2	65296924	65296924	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	65296924	65296924	G	A	SNP	CEP68	ENST00000377990	human	ensembl	74_37	+1	known	missense	c.346	p.G116R	0.003	NULL	NULL	-	no_errors	CEP68	HGNC	ENSG00000011523				71	0	0	40	16	28.5714
TMEM18	0	genome.wustl.edu	37	2	675560	675560	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	675560	675560	C	T	SNP	TMEM18	ENST00000281017	human	ensembl	74_37	-1	known	missense	c.128	p.C43Y	0.153	NULL	NULL	-	no_errors	TMEM18	HGNC	ENSG00000151353				63	0	0	32	9	21.9512
PCBP1	0	genome.wustl.edu	37	2	70315822	70315822	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	70315822	70315822	C	T	SNP	PCBP1	ENST00000303577	human	ensembl	74_37	+1	known	missense	c.947	p.A316V	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,pfam_KH_dom_type_2,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	PCBP1	HGNC	ENSG00000169564				54	0	0	36	17	32.0755
ATP6V1B1	0	genome.wustl.edu	37	2	71189997	71189997	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	71189997	71189997	G	A	SNP	ATP6V1B1	ENST00000234396	human	ensembl	74_37	+1	known	silent	c.876	p.T292	0.001	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,superfamily_P-loop_NTPase,tigrfam_ATPase_V1-cplx_bsu	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,pfam_ATPase_F1/V1/A1-cplx_a/bsu_C,pfam_ATPase_F1_a/bsu_N,superfamily_P-loop_NTPase,superfamily_ATPase_F1_a/bsu_N,superfamily_ATPase_F1/V1/A1-cplx_a/bsu_C,tigrfam_ATPase_V1-cplx_bsu	-	no_errors	ATP6V1B1	HGNC	ENSG00000116039				78	0	0	37	11	22.9167
CYP26B1	0	genome.wustl.edu	37	2	72371262	72371262	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	72371262	72371262	G	A	SNP	CYP26B1	ENST00000001146	human	ensembl	74_37	-1	known	silent	c.285	p.R95	0.860	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_B,prints_Cyt_P450	-	no_errors	CYP26B1	HGNC	ENSG00000003137				48	0	0	29	13	30.9524
EMX1	0	genome.wustl.edu	37	2	73160979	73160979	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	73160979	73160979	C	T	SNP	EMX1	ENST00000258106	human	ensembl	74_37	+1	known	missense	c.769	p.P257S	0.992	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	EMX1	HGNC	ENSG00000135638				28	0	0	31	4	11.4286
CAPG	0	genome.wustl.edu	37	2	85628347	85628347	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	85628347	85628347	G	A	SNP	CAPG	ENST00000263867	human	ensembl	74_37	-1	known	missense	c.457	p.R153W	1.000	pfam_Gelsolin_dom,smart_Villin/Gelsolin,prints_Villin/Gelsolin	pfam_Gelsolin_dom,smart_Villin/Gelsolin,prints_Villin/Gelsolin	-	no_errors	CAPG	HGNC	ENSG00000042493				87	0	0	71	16	18.3908
EIF2AK3	0	genome.wustl.edu	37	2	88890059	88890059	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	88890059	88890059	A	T	SNP	EIF2AK3	ENST00000303236	human	ensembl	74_37	-1	known	missense	c.1067	p.F356Y	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Quinonprotein_ADH-like_supfam,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	EIF2AK3	HGNC	ENSG00000172071				54	0	0	21	14	40
ASTL	0	genome.wustl.edu	37	2	96789597	96789597	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	96789597	96789597	C	T	SNP	ASTL	ENST00000342380	human	ensembl	74_37	-1	known	missense	c.1288	p.E430K	0.008	NULL	pfam_Peptidase_M12A,smart_Peptidase_Metallo,prints_Peptidase_M12A	-	no_errors	ASTL	HGNC	ENSG00000188886				52	0	0	18	22	55
ASTL	0	genome.wustl.edu	37	2	96798442	96798442	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	96798442	96798442	C	T	SNP	ASTL	ENST00000342380	human	ensembl	74_37	-1	known	silent	c.474	p.G158	0.168	pfam_Peptidase_M12A,smart_Peptidase_Metallo	pfam_Peptidase_M12A,smart_Peptidase_Metallo,prints_Peptidase_M12A	-	no_errors	ASTL	HGNC	ENSG00000188886				49	0	0	36	10	21.7391
SNRNP200	0	genome.wustl.edu	37	2	96945296	96945296	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	96945296	96945296	A	G	SNP	SNRNP200	ENST00000323853	human	ensembl	74_37	-1	known	missense	c.5026	p.Y1676H	1.000	superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SNRNP200	HGNC	ENSG00000144028				22	0	0	21	3	12.5
ANKRD39	0	genome.wustl.edu	37	2	97514112	97514112	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	97514112	97514112	G	A	SNP	ANKRD39	ENST00000393537	human	ensembl	74_37	-1	known	missense	c.478	p.R160W	1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD39	HGNC	ENSG00000213337				48	0	0	29	4	12.1212
ANKRD36	0	genome.wustl.edu	37	2	97858783	97858783	+	Silent	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	97858783	97858783	T	C	SNP	ANKRD36	ENST00000420699	human	ensembl	74_37	+1	known	silent	c.2442	p.S814	0.001	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD36	HGNC	ENSG00000135976				18	0	0	3	6	66.6667
TSGA10	0	genome.wustl.edu	37	2	99688288	99688288	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	99688288	99688288	G	A	SNP	TSGA10	ENST00000355053	human	ensembl	74_37	-1	known	missense	c.988	p.R330C	1.000	NULL	NULL	-	no_errors	TSGA10	HGNC	ENSG00000135951				105	0	0	30	60	66.6667
FLRT3	0	genome.wustl.edu	37	20	14307651	14307651	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	20	14307651	14307651	T	C	SNP	FLRT3	ENST00000341420	human	ensembl	74_37	-1	known	missense	c.502	p.T168A	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Fibronectin_type3	-	no_errors	FLRT3	HGNC	ENSG00000125848				93	0	0	47	25	34.7222
SEC23B	0	genome.wustl.edu	37	20	18523019	18523019	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	20	18523019	18523019	G	A	SNP	SEC23B	ENST00000262544	human	ensembl	74_37	+1	known	missense	c.1484	p.R495H	1.000	pfam_Sec23_24_beta_S	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Gelsolin_dom,pfam_Znf_Sec23_Sec24,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC23B	HGNC	ENSG00000101310				136	0	0	86	38	30.6452
THBD	0	genome.wustl.edu	37	20	23028798	23028798	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	20	23028798	23028798	G	A	SNP	THBD	ENST00000377103	human	ensembl	74_37	-1	known	silent	c.1344	p.G448	0.000	pirsf_CD93/CD141,pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom	pirsf_CD93/CD141,pfam_Tme5_EGF-like,pfam_EGF-like_Ca-bd_dom,superfamily_C-type_lectin_fold,smart_C-type_lectin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,prints_Thrombomodulin,pfscan_C-type_lectin	-	no_errors	THBD	HGNC	ENSG00000178726				38	0	0	10	9	47.3684
TGM6	0	genome.wustl.edu	37	20	2384384	2384384	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	20	2384384	2384384	G	A	SNP	TGM6	ENST00000202625	human	ensembl	74_37	+1	known	silent	c.1251	p.T417	0.024	NULL	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM6	HGNC	ENSG00000166948				97	0	0	73	18	19.7802
ACSS1	0	genome.wustl.edu	37	20	25004171	25004171	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	20	25004171	25004171	C	T	SNP	ACSS1	ENST00000323482	human	ensembl	74_37	-1	known	silent	c.738	p.Q246	0.764	pfam_AMP-dep_Synth/Lig,tigrfam_Ac_CoA_lig	pfam_AMP-dep_Synth/Lig,tigrfam_Ac_CoA_lig	-	no_errors	ACSS1	HGNC	ENSG00000154930				54	0	0	21	11	34.375
DEFB119	0	genome.wustl.edu	37	20	29965051	29965051	+	Nonstop_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	20	29965051	29965051	A	G	SNP	DEFB119	ENST00000376321	human	ensembl	74_37	-1	known	nonstop	c.253	p.*85R	0.689	NULL	NULL	-	no_errors	DEFB119	HGNC	ENSG00000180483				101	0	0	42	40	48.7805
GNRH2	0	genome.wustl.edu	37	20	3025077	3025077	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	20	3025077	3025077	G	A	SNP	GNRH2	ENST00000245983	human	ensembl	74_37	+1	known	missense	c.17	p.R6Q	0.007	NULL	pfam_GnRH	-	no_errors	GNRH2	HGNC	ENSG00000125787				52	0	0	31	12	27.907
CCM2L	0	genome.wustl.edu	37	20	30617624	30617624	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	20	30617624	30617624	G	A	SNP	CCM2L	ENST00000300415	human	ensembl	74_37	+1	known	missense	c.1385	p.R462H	1.000	NULL	NULL	-	no_errors	CCM2L	HGNC	ENSG00000101331				25	0	0	14	8	36.3636
KIF3B	0	genome.wustl.edu	37	20	30904405	30904405	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	20	30904405	30904405	A	C	SNP	KIF3B	ENST00000375712	human	ensembl	74_37	+1	known	missense	c.1582	p.S528R	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF3B	HGNC	ENSG00000101350				64	0	0	40	13	24.5283
LZTS3	0	genome.wustl.edu	37	20	3145701	3145701	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	20	3145701	3145701	C	T	SNP	LZTS3	ENST00000329152	human	ensembl	74_37	-1	known	missense	c.1421	p.R474H	1.000	NULL	NULL	-	no_errors	LZTS3	Uniprot_gn	ENSG00000088899				14	0	0	7	4	36.3636
MYH7B	0	genome.wustl.edu	37	20	33577633	33577633	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	20	33577633	33577633	G	A	SNP	MYH7B	ENST00000262873	human	ensembl	74_37	+1	novel	missense	c.1804	p.A602T	0.002	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Myosin_S1_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7B	HGNC	ENSG00000078814				46	0	0	42	17	28.8136
DLGAP4	0	genome.wustl.edu	37	20	35125326	35125326	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	20	35125326	35125326	C	T	SNP	DLGAP4	ENST00000339266	human	ensembl	74_37	+1	known	missense	c.1867	p.R623W	0.970	NULL	pfam_GKAP	-	no_errors	DLGAP4	HGNC	ENSG00000080845				32	0	0	13	11	45.8333
NNAT	0	genome.wustl.edu	37	20	36149740	36149740	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	20	36149740	36149740	G	A	SNP	NNAT	ENST00000062104	human	ensembl	74_37	+1	known	missense	c.7	p.A3T	1.000	NULL	NULL	-	no_errors	NNAT	HGNC	ENSG00000053438				130	0	0	89	31	25.8333
ADAM33	0	genome.wustl.edu	37	20	3652952	3652952	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	20	3652952	3652952	G	A	SNP	ADAM33	ENST00000356518	human	ensembl	74_37	-1	known	missense	c.1426	p.R476C	1.000	pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin,prints_Blood-coag_inhib_Disintegrin	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM33	HGNC	ENSG00000149451				40	0	0	21	14	40
PPP1R16B	0	genome.wustl.edu	37	20	37536802	37536802	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	20	37536802	37536802	G	T	SNP	PPP1R16B	ENST00000299824	human	ensembl	74_37	+1	known	missense	c.1160	p.R387M	1.000	pirsf_Pase-1_reg_su_16AB_euk	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pirsf_Pase-1_reg_su_16AB_euk,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	PPP1R16B	HGNC	ENSG00000101445				34	0	0	32	8	20
FAM83D	0	genome.wustl.edu	37	20	37570621	37570621	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	20	37570621	37570621	A	G	SNP	FAM83D	ENST00000217429	human	ensembl	74_37	+1	known	missense	c.593	p.D198G	0.999	pfam_DUF1669	pfam_DUF1669	-	no_errors	FAM83D	HGNC	ENSG00000101447				111	0	0	80	6	6.97674
DHX35	0	genome.wustl.edu	37	20	37647462	37647462	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	20	37647462	37647462	G	A	SNP	DHX35	ENST00000252011	human	ensembl	74_37	+1	known	missense	c.1418	p.C473Y	1.000	pfam_Helicase-assoc_dom,superfamily_P-loop_NTPase,smart_Helicase-assoc_dom	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX35	HGNC	ENSG00000101452				165	0	0	121	32	20.915
CHD6	0	genome.wustl.edu	37	20	40126803	40126803	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	20	40126803	40126803	C	T	SNP	CHD6	ENST00000373222	human	ensembl	74_37	-1	known	missense	c.1084	p.V362I	1.000	NULL	NULL	-	no_errors	CHD6	HGNC	ENSG00000124177				73	0	0	41	14	25.4545
ADRA1D	0	genome.wustl.edu	37	20	4202257	4202257	+	Silent	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	20	4202257	4202257	T	C	SNP	ADRA1D	ENST00000379453	human	ensembl	74_37	-1	known	silent	c.1632	p.L544	0.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_ADRA1D_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	ADRA1D	HGNC	ENSG00000171873				15	0	0	19	5	20.8333
YWHAB	0	genome.wustl.edu	37	20	43535058	43535058	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	20	43535058	43535058	C	T	SNP	YWHAB	ENST00000353703	human	ensembl	74_37	+1	known	silent	c.720	p.D240	0.956	smart_14-3-3_domain,pirsf_14-3-3	pfam_14-3-3_domain,superfamily_14-3-3_domain,smart_14-3-3_domain,pirsf_14-3-3,prints_14-3-3	-	no_errors	YWHAB	HGNC	ENSG00000166913				44	0	0	16	14	46.6667
SYS1	0	genome.wustl.edu	37	20	43995543	43995543	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	20	43995543	43995543	C	T	SNP	SYS1	ENST00000243918	human	ensembl	74_37	+1	known	nonsense	c.259	p.R87*	1.000	pfam_Integral_membrane_SYS1-rel,pirsf_Integral_membrane_SYS1	pfam_Integral_membrane_SYS1-rel,pirsf_Integral_membrane_SYS1	-	no_errors	SYS1	HGNC	ENSG00000204070				138	0	0	97	32	24.8062
KCNB1	0	genome.wustl.edu	37	20	48098564	48098564	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	20	48098564	48098564	C	T	SNP	KCNB1	ENST00000371741	human	ensembl	74_37	-1	known	missense	c.454	p.A152T	1.000	NULL	pfam_K_chnl_volt-dep_Kv2,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv2.1,prints_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv8	-	no_errors	KCNB1	HGNC	ENSG00000158445				88	0	0	38	42	52.5
PTGIS	0	genome.wustl.edu	37	20	48164538	48164538	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	20	48164538	48164538	A	G	SNP	PTGIS	ENST00000244043	human	ensembl	74_37	-1	known	missense	c.217	p.Y73H	0.985	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I	-	no_errors	PTGIS	HGNC	ENSG00000124212				71	0	0	24	18	42.8571
PARD6B	0	genome.wustl.edu	37	20	49366959	49366959	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	20	49366959	49366959	G	A	SNP	PARD6B	ENST00000371610	human	ensembl	74_37	+1	known	silent	c.1053	p.T351	0.001	NULL	pfam_OPR_PB1,pfam_PDZ,superfamily_PDZ,smart_OPR_PB1,smart_PDZ,pfscan_PDZ	-	no_errors	PARD6B	HGNC	ENSG00000124171				104	0	0	66	33	33.3333
SALL4	0	genome.wustl.edu	37	20	50408031	50408031	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	20	50408031	50408031	G	T	SNP	SALL4	ENST00000217086	human	ensembl	74_37	-1	known	missense	c.991	p.P331T	0.234	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL4	HGNC	ENSG00000101115				30	0	0	21	5	19.2308
MCM8	0	genome.wustl.edu	37	20	5933111	5933111	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	20	5933111	5933111	T	C	SNP	MCM8	ENST00000378886	human	ensembl	74_37	+1	known	missense	c.190	p.S64P	0.046	NULL	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,superfamily_NA-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,smart_AAA+_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM8	HGNC	ENSG00000125885				156	0	0	90	32	26.2295
SS18L1	0	genome.wustl.edu	37	20	60737894	60737894	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	20	60737894	60737894	G	A	SNP	SS18L1	ENST00000370848	human	ensembl	74_37	+1	known	missense	c.472	p.A158T	0.958	NULL	pfam_SS18_fam	-	no_errors	SS18L1	HGNC	ENSG00000184402				15	0	0	13	8	38.0952
COL9A3	0	genome.wustl.edu	37	20	61467685	61467685	+	Silent	SNP	G	G	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	20	61467685	61467685	G	T	SNP	COL9A3	ENST00000343916	human	ensembl	74_37	+1	known	silent	c.1548	p.P516	1.000	pfam_Collagen	pfam_Collagen	-	no_errors	COL9A3	HGNC	ENSG00000092758				32	0	0	11	12	52.1739
DIDO1	0	genome.wustl.edu	37	20	61511012	61511012	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	20	61511012	61511012	G	T	SNP	DIDO1	ENST00000266070	human	ensembl	74_37	-1	known	missense	c.6296	p.P2099Q	0.001	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	DIDO1	HGNC	ENSG00000101191				98	0	0	68	54	44.2623
DIDO1	0	genome.wustl.edu	37	20	61528048	61528048	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	20	61528048	61528048	C	T	SNP	DIDO1	ENST00000266070	human	ensembl	74_37	-1	known	missense	c.1889	p.G630D	0.004	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	DIDO1	HGNC	ENSG00000101191				57	0	0	29	10	25.641
HELZ2	0	genome.wustl.edu	37	20	62200154	62200154	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	20	62200154	62200154	C	T	SNP	HELZ2	ENST00000467148	human	ensembl	74_37	-1	known	silent	c.1287	p.T429	0.000	NULL	superfamily_P-loop_NTPase	-	no_errors	HELZ2	HGNC	ENSG00000130589				16	0	0	13	3	18.75
ZBTB46	0	genome.wustl.edu	37	20	62421833	62421833	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	20	62421833	62421833	G	A	SNP	ZBTB46	ENST00000245663	human	ensembl	74_37	-1	known	missense	c.278	p.A93V	0.997	pfam_BTB_POZ,pfam_DUF3342,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,pfam_DUF3342,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB46	HGNC	ENSG00000130584				32	0	0	24	14	36.8421
MYT1	0	genome.wustl.edu	37	20	62858781	62858781	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	20	62858781	62858781	G	A	SNP	MYT1	ENST00000536311	human	ensembl	74_37	+1	known	missense	c.2623	p.G875S	1.000	pfam_Znf_C2HC	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	MYT1	HGNC	ENSG00000196132				12	0	0	17	5	22.7273
ANGPT4	0	genome.wustl.edu	37	20	870947	870947	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	20	870947	870947	T	C	SNP	ANGPT4	ENST00000381922	human	ensembl	74_37	-1	known	missense	c.374	p.Q125R	1.000	NULL	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	ANGPT4	HGNC	ENSG00000101280				37	0	0	31	18	36.7347
TMPRSS15	0	genome.wustl.edu	37	21	19737461	19737461	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	21	19737461	19737461	T	C	SNP	TMPRSS15	ENST00000284885	human	ensembl	74_37	-1	known	missense	c.769	p.I257V	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_Peptidase_S1,pfam_CUB_dom,pfam_MAM_dom,pfam_SEA_dom,pfam_LDrepeatLR_classA_rpt,pfam_Peptidase_S1A_nudel,pfam_SRCR,superfamily_Trypsin-like_Pept_dom,superfamily_ConA-like_lec_gl_sf,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_Srcr_rcpt-rel,smart_SEA_dom,smart_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_MAM_dom,smart_Srcr_rcpt-rel,smart_Peptidase_S1,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_MAM_dom,pfscan_SEA_dom,pfscan_SRCR,pfscan_Peptidase_S1,prints_Peptidase_S1A,prints_LDrepeatLR_classA_rpt	-	no_errors	TMPRSS15	HGNC	ENSG00000154646				86	0	0	31	11	26.1905
NCAM2	0	genome.wustl.edu	37	21	22849745	22849745	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	21	22849745	22849745	C	T	SNP	NCAM2	ENST00000400546	human	ensembl	74_37	+1	known	missense	c.2030	p.P677L	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom,prints_Neural_cell_adh	-	no_errors	NCAM2	HGNC	ENSG00000154654				85	0	0	37	16	30.1887
GABPA	0	genome.wustl.edu	37	21	27136926	27136926	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	21	27136926	27136926	C	T	SNP	GABPA	ENST00000354828	human	ensembl	74_37	+1	known	silent	c.964	p.L322	1.000	pfam_Ets_dom,smart_Ets_dom,pirsf_TF_GA-bd_asu,pfscan_Ets_dom,prints_Ets_dom	pfam_GABP_asu_N,pfam_Ets_dom,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets_dom,pirsf_TF_GA-bd_asu,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	GABPA	HGNC	ENSG00000154727				79	0	0	33	14	29.7872
ADAMTS1	0	genome.wustl.edu	37	21	28212698	28212698	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	21	28212698	28212698	C	T	SNP	ADAMTS1	ENST00000284984	human	ensembl	74_37	-1	known	missense	c.1562	p.C521Y	1.000	smart_ADAM_Cys-rich	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS1,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS1	HGNC	ENSG00000154734				61	0	0	24	5	17.2414
PCP4	0	genome.wustl.edu	37	21	41301089	41301089	+	RNA	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	21	41301089	41301089	G	A	SNP	PCP4	ENST00000467565	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.033	-	-	-	no_errors	PCP4	HGNC	ENSG00000183036				41	0	0	16	13	44.8276
ZBTB21	0	genome.wustl.edu	37	21	43412000	43412000	+	Splice_Site	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	21	43412000	43412000	T	C	SNP	ZBTB21	ENST00000465968	human	ensembl	74_37	-1	known	splice_site	c.NULL	NULL	0.992	-	-	-	no_errors	ZBTB21	HGNC	ENSG00000173276				176	0	0	117	27	18.75
UMODL1	0	genome.wustl.edu	37	21	43508533	43508533	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	21	43508533	43508533	A	G	SNP	UMODL1	ENST00000408989	human	ensembl	74_37	+1	known	missense	c.733	p.T245A	0.000	NULL	pfam_ZP_dom,pfam_SEA_dom,pfam_EGF-like_Ca-bd_dom,pfam_EMI_domain,pfam_WAP-type_4-diS_core,superfamily_Fibronectin_type3,superfamily_WAP-type_4-diS_core,smart_WAP-type_4-diS_core,smart_EGF-like_Ca-bd_dom,smart_Fibronectin_type3,smart_ZP_dom,pfscan_EG-like_dom,pfscan_EMI_domain,pfscan_Fibronectin_type3,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	UMODL1	HGNC	ENSG00000177398				21	0	0	12	6	33.3333
TMPRSS3	0	genome.wustl.edu	37	21	43810131	43810131	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	21	43810131	43810131	G	A	SNP	TMPRSS3	ENST00000380399	human	ensembl	74_37	-1	known	missense	c.362	p.A121V	0.454	NULL	pfam_Peptidase_S1,pfam_SRCR,pfam_Peptidase_S1A_nudel,pfam_LDrepeatLR_classA_rpt,superfamily_Trypsin-like_Pept_dom,superfamily_Srcr_rcpt-rel,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Srcr_rcpt-rel,smart_Peptidase_S1,pfscan_LDrepeatLR_classA_rpt,pfscan_SRCR,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	TMPRSS3	HGNC	ENSG00000160183				48	0	0	14	12	46.1538
NDUFV3	0	genome.wustl.edu	37	21	44324217	44324217	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	21	44324217	44324217	G	T	SNP	NDUFV3	ENST00000354250	human	ensembl	74_37	+1	known	missense	c.1095	p.K365N	0.664	NULL	NULL	-	no_errors	NDUFV3	HGNC	ENSG00000160194				41	0	0	34	17	33.3333
PDXK	0	genome.wustl.edu	37	21	45168941	45168941	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	21	45168941	45168941	G	A	SNP	PDXK	ENST00000291565	human	ensembl	74_37	+1	known	silent	c.444	p.T148	0.248	pfam_PfkB_dom,pfam_HMP-P_kinase-1,tigrfam_PyrdxlP_synth_PyrdxlKinase	pfam_PfkB_dom,pfam_HMP-P_kinase-1,tigrfam_PyrdxlP_synth_PyrdxlKinase	-	no_errors	PDXK	HGNC	ENSG00000160209				63	0	0	22	7	24.1379
PFKL	0	genome.wustl.edu	37	21	45741668	45741668	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	21	45741668	45741668	G	A	SNP	PFKL	ENST00000403390	human	ensembl	74_37	+1	known	silent	c.1389	p.A463	0.210	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,tigrfam_6-phosphofructokinase_euk	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,prints_Phosphofructokinase,tigrfam_6-phosphofructokinase_euk	-	no_errors	PFKL	HGNC	ENSG00000141959				32	0	0	15	6	28.5714
CECR2	0	genome.wustl.edu	37	22	17978463	17978463	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	22	17978463	17978463	C	T	SNP	CECR2	ENST00000400573	human	ensembl	74_37	+1	novel	missense	c.361	p.R121C	1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	CECR2	HGNC	ENSG00000099954				47	0	0	16	7	30.4348
TRMT2A	0	genome.wustl.edu	37	22	20103816	20103816	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	22	20103816	20103816	G	A	SNP	TRMT2A	ENST00000252136	human	ensembl	74_37	-1	known	missense	c.344	p.T115I	0.999	pfscan_RRM_dom	pfam_U5_MeTrfase,pfam_PCMT,pfam_Small_mtfrase_dom,pfam_RNA_methylase_dom,pfam_RNA_MeTrfase_RsmD,pfam_Methyltransf_11,pfam_tRNA_(Gua-N-7)_MeTrfase,pfam_UbiE/COQ5_MeTrFase,pfscan_RRM_dom	-	no_errors	TRMT2A	HGNC	ENSG00000099899				42	0	0	24	4	14.2857
ZNF74	0	genome.wustl.edu	37	22	20761010	20761010	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	22	20761010	20761010	G	T	SNP	ZNF74	ENST00000356671	human	ensembl	74_37	+1	known	nonsense	c.1687	p.E563*	0.009	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF74	HGNC	ENSG00000185252				81	0	0	23	17	42.5
RTDR1	0	genome.wustl.edu	37	22	23404006	23404006	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	22	23404006	23404006	G	A	SNP	RTDR1	ENST00000216036	human	ensembl	74_37	-1	known	silent	c.771	p.F257	0.004	superfamily_ARM-type_fold	pfam_HEAT,pfam_Armadillo,superfamily_ARM-type_fold	-	no_errors	RTDR1	HGNC	ENSG00000100218				48	0	0	27	4	12.9032
SUSD2	0	genome.wustl.edu	37	22	24579578	24579578	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	22	24579578	24579578	G	A	SNP	SUSD2	ENST00000358321	human	ensembl	74_37	+1	known	missense	c.403	p.G135S	0.967	superfamily_Ig_E-set	pfam_AMOP,pfam_VWF_type-D,pfam_Sushi_SCR_CCP,pfam_Somatomedin_B_dom,superfamily_Sushi_SCR_CCP,superfamily_Ig_E-set,smart_AMOP,smart_VWF_type-D,smart_Sushi_SCR_CCP,pfscan_AMOP,pfscan_Somatomedin_B_dom,pfscan_Sushi_SCR_CCP	-	no_errors	SUSD2	HGNC	ENSG00000099994				36	0	0	19	5	20.8333
SPECC1L	0	genome.wustl.edu	37	22	24717611	24717611	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	22	24717611	24717611	G	T	SNP	SPECC1L	ENST00000314328	human	ensembl	74_37	+1	known	missense	c.663	p.E221D	1.000	NULL	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_bHLH_dom,smart_CH-domain,pfscan_CH-domain	-	no_errors	SPECC1L	HGNC	ENSG00000100014				112	0	0	46	26	36.1111
SGSM1	0	genome.wustl.edu	37	22	25294421	25294421	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	22	25294421	25294421	G	A	SNP	SGSM1	ENST00000400359	human	ensembl	74_37	+1	known	silent	c.2670	p.S890	0.925	superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Run,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Run,smart_Rab-GTPase-TBC_dom,pfscan_Run,pfscan_Rab-GTPase-TBC_dom	-	no_errors	SGSM1	HGNC	ENSG00000167037				95	0	0	38	11	22.449
ADRBK2	0	genome.wustl.edu	37	22	26086188	26086188	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	22	26086188	26086188	C	T	SNP	ADRBK2	ENST00000324198	human	ensembl	74_37	+1	known	silent	c.990	p.H330	0.867	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RGS_dom,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Regulat_G_prot_signal_superfam,pfscan_Prot_kinase_dom,prints_GPCR_kinase	-	no_errors	ADRBK2	HGNC	ENSG00000100077				47	0	0	22	9	29.0323
TFIP11	0	genome.wustl.edu	37	22	26895229	26895229	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	22	26895229	26895229	G	A	SNP	TFIP11	ENST00000405938	human	ensembl	74_37	-1	known	silent	c.1170	p.D390	0.103	NULL	pfam_GCFC_dom,pfam_TIP_N,pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	TFIP11	HGNC	ENSG00000100109				34	0	0	12	8	40
CHEK2	0	genome.wustl.edu	37	22	29120963	29120963	+	Splice_Site	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	22	29120963	29120963	A	G	SNP	CHEK2	ENST00000382580	human	ensembl	74_37	-1	known	splice_site	c.721+2	e4+2	1.000	-	-	-	no_errors	CHEK2	HGNC	ENSG00000183765				61	0	0	31	3	8.82353
EWSR1	0	genome.wustl.edu	37	22	29695771	29695771	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	22	29695771	29695771	C	G	SNP	EWSR1	ENST00000414183	human	ensembl	74_37	+1	known	missense	c.1876	p.P626A	0.935	NULL	pfam_Znf_RanBP2,pfam_RRM_dom,smart_RRM_dom,smart_Znf_RanBP2,pfscan_Znf_RanBP2,pfscan_RRM_dom	-	no_errors	EWSR1	HGNC	ENSG00000182944				11	0	0	4	5	55.5556
RNF215	0	genome.wustl.edu	37	22	30780336	30780336	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	22	30780336	30780336	G	T	SNP	RNF215	ENST00000382363	human	ensembl	74_37	-1	known	missense	c.736	p.Q246K	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF215	HGNC	ENSG00000099999				53	0	0	48	5	9.43396
DEPDC5	0	genome.wustl.edu	37	22	32239152	32239152	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	22	32239152	32239152	G	A	SNP	DEPDC5	ENST00000266091	human	ensembl	74_37	+1	known	missense	c.2587	p.V863M	1.000	NULL	pfam_IML1,pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	DEPDC5	HGNC	ENSG00000100150				74	0	0	41	13	24.0741
SYN3	0	genome.wustl.edu	37	22	33327401	33327401	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	22	33327401	33327401	G	A	SNP	SYN3	ENST00000332840	human	ensembl	74_37	-1	known	silent	c.435	p.V145	1.000	pfam_Synapsin_pre-ATP-grasp_dom,superfamily_PreATP-grasp_dom	pfam_Synapsin_ATP-bd_dom,pfam_Synapsin_pre-ATP-grasp_dom,pfam_Synapsin_P_site,pfam_ATP-grasp_RimK-type,superfamily_PreATP-grasp_dom,prints_Synapsin	-	no_errors	SYN3	HGNC	ENSG00000185666				47	0	0	23	8	25.8065
CARD10	0	genome.wustl.edu	37	22	37914112	37914112	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	22	37914112	37914112	C	T	SNP	CARD10	ENST00000251973	human	ensembl	74_37	-1	known	missense	c.239	p.R80H	1.000	pfam_CARD,superfamily_DEATH-like_dom,pfscan_CARD	pfam_CARD,superfamily_DEATH-like_dom,pfscan_CARD	-	no_errors	CARD10	HGNC	ENSG00000100065				31	0	0	17	8	32
CBX6	0	genome.wustl.edu	37	22	39262866	39262866	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	22	39262866	39262866	G	A	SNP	CBX6	ENST00000407418	human	ensembl	74_37	-1	known	missense	c.587	p.A196V	0.034	NULL	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow,prints_Chromo_dom_subgr	-	no_errors	CBX6	HGNC	ENSG00000183741				18	0	0	12	3	20
FAM83F	0	genome.wustl.edu	37	22	40415244	40415244	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	22	40415244	40415244	C	T	SNP	FAM83F	ENST00000333407	human	ensembl	74_37	+1	known	missense	c.562	p.R188C	1.000	pfam_DUF1669	pfam_DUF1669	-	no_errors	FAM83F	HGNC	ENSG00000133477				70	0	0	44	14	24.1379
SLC25A17	0	genome.wustl.edu	37	22	41173356	41173356	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	22	41173356	41173356	C	T	SNP	SLC25A17	ENST00000435456	human	ensembl	74_37	-1	known	missense	c.473	p.R158H	0.887	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A17	HGNC	ENSG00000100372				78	0	0	31	10	24.3902
XRCC6	0	genome.wustl.edu	37	22	42032527	42032527	+	Silent	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	22	42032527	42032527	A	G	SNP	XRCC6	ENST00000359308	human	ensembl	74_37	+1	known	silent	c.342	p.K114	0.966	pirsf_Ku70,pfam_Ku_N,tigrfam_Ku70	pirsf_Ku70,pfam_Ku_N,pfam_Ku70/Ku80_beta-barrel_dom,pfam_Ku_C,pfam_SAP_dom,superfamily_SPOC_like_C_dom,smart_Ku70/Ku80_beta-barrel_dom,smart_SAP_dom,pfscan_SAP_dom,tigrfam_Ku70	-	no_errors	XRCC6	HGNC	ENSG00000196419				45	0	0	14	8	36.3636
MEI1	0	genome.wustl.edu	37	22	42125712	42125712	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	22	42125712	42125712	A	G	SNP	MEI1	ENST00000401548	human	ensembl	74_37	+1	known	missense	c.908	p.H303R	0.954	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	MEI1	HGNC	ENSG00000167077				22	0	0	20	4	16.6667
MEI1	0	genome.wustl.edu	37	22	42191805	42191805	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	22	42191805	42191805	C	A	SNP	MEI1	ENST00000401548	human	ensembl	74_37	+1	known	missense	c.3733	p.L1245I	0.005	NULL	superfamily_ARM-type_fold	-	no_errors	MEI1	HGNC	ENSG00000167077				29	0	0	7	4	36.3636
SCUBE1	0	genome.wustl.edu	37	22	43616498	43616498	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	22	43616498	43616498	T	C	SNP	SCUBE1	ENST00000360835	human	ensembl	74_37	-1	known	missense	c.1645	p.T549A	1.000	NULL	pfam_EGF-like_Ca-bd_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_EG-like_dom,pfam_CUB_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	SCUBE1	HGNC	ENSG00000159307				105	0	0	58	20	25.641
ARHGAP8	0	genome.wustl.edu	37	22	45255646	45255646	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	22	45255646	45255646	C	T	SNP	ARHGAP8	ENST00000517296	human	ensembl	74_37	+1	known	nonsense	c.1543	p.Q515*	0.994	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_HbrB,pfam_CRAL-TRIO_dom,superfamily_Rho_GTPase_activation_prot,superfamily_CRAL-TRIO_dom,smart_RhoGAP_dom,pfscan_CRAL-TRIO_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP8	HGNC	ENSG00000241484				30	0	0	24	7	22.5806
WNT7B	0	genome.wustl.edu	37	22	46319086	46319086	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	22	46319086	46319086	C	T	SNP	WNT7B	ENST00000339464	human	ensembl	74_37	-1	known	missense	c.700	p.A234T	0.994	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt7	-	no_errors	WNT7B	HGNC	ENSG00000188064				29	0	0	25	4	13.7931
GRAMD4	0	genome.wustl.edu	37	22	47073062	47073062	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	22	47073062	47073062	A	G	SNP	GRAMD4	ENST00000361034	human	ensembl	74_37	+1	known	missense	c.1651	p.M551V	1.000	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD4	HGNC	ENSG00000075240				64	0	0	60	14	18.9189
TUBGCP6	0	genome.wustl.edu	37	22	50667976	50667976	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	22	50667976	50667976	C	T	SNP	TUBGCP6	ENST00000248846	human	ensembl	74_37	-1	known	missense	c.1147	p.V383I	0.859	pfam_TUBGCP	pfam_TUBGCP	-	no_errors	TUBGCP6	HGNC	ENSG00000128159				12	0	0	2	7	77.7778
TBC1D23	0	genome.wustl.edu	37	3	100020962	100020962	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	100020962	100020962	G	A	SNP	TBC1D23	ENST00000394144	human	ensembl	74_37	+1	known	missense	c.1144	p.A382T	1.000	pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,pfscan_Rhodanese-like_dom	pfam_Rab-GTPase-TBC_dom,pfam_Rhodanese-like_dom,superfamily_Rab-GTPase-TBC_dom,superfamily_Rhodanese-like_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom,pfscan_Rhodanese-like_dom	-	no_errors	TBC1D23	HGNC	ENSG00000036054				58	0	0	36	15	29.4118
SEC13	0	genome.wustl.edu	37	3	10346789	10346789	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	10346789	10346789	A	C	SNP	SEC13	ENST00000350697	human	ensembl	74_37	-1	known	missense	c.636	p.S212R	0.997	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SEC13	HGNC	ENSG00000157020				34	0	0	29	6	17.1429
ATP2B2	0	genome.wustl.edu	37	3	10382234	10382234	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	10382234	10382234	G	A	SNP	ATP2B2	ENST00000352432	human	ensembl	74_37	-1	known	silent	c.3072	p.D1024	0.834	pfam_ATPase_P-typ_cation-transptr_C,tigrfam_ATPase_P-typ_Ca-transp_plasma	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B2	HGNC	ENSG00000157087				110	0	0	77	23	23
ATP2B2	0	genome.wustl.edu	37	3	10387133	10387133	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	10387133	10387133	G	A	SNP	ATP2B2	ENST00000352432	human	ensembl	74_37	-1	known	nonsense	c.2638	p.Q880*	1.000	tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B2	HGNC	ENSG00000157087				63	0	0	38	9	19.1489
ZBED2	0	genome.wustl.edu	37	3	111312782	111312782	+	Silent	SNP	A	A	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	111312782	111312782	A	C	SNP	ZBED2	ENST00000317012	human	ensembl	74_37	-1	known	silent	c.267	p.P89	0.033	pfam_Znf_BED_prd,smart_Znf_BED_prd,pfscan_Znf_BED_prd	pfam_Znf_BED_prd,smart_Znf_BED_prd,pfscan_Znf_BED_prd	-	no_errors	ZBED2	HGNC	ENSG00000177494				53	0	0	24	9	27.2727
PLCXD2	0	genome.wustl.edu	37	3	111564673	111564673	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	111564673	111564673	C	T	SNP	PLCXD2	ENST00000393934	human	ensembl	74_37	+1	known	missense	c.872	p.A291V	0.006	NULL	pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_PInositol-sp_X_dom	-	no_errors	PLCXD2	HGNC	ENSG00000240891				89	0	0	70	5	6.66667
SLC9C1	0	genome.wustl.edu	37	3	111921157	111921157	+	Silent	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	111921157	111921157	T	C	SNP	SLC9C1	ENST00000305815	human	ensembl	74_37	-1	known	silent	c.2262	p.Q754	1.000	NULL	pfam_Cation/H_exchanger,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	-	no_errors	SLC9C1	HGNC	ENSG00000172139				62	0	0	33	11	25
KIAA2018	0	genome.wustl.edu	37	3	113376559	113376559	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	113376559	113376559	G	A	SNP	KIAA2018	ENST00000316407	human	ensembl	74_37	-1	known	missense	c.3970	p.R1324C	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	KIAA2018	HGNC	ENSG00000176542				136	0	0	84	27	24.3243
QTRTD1	0	genome.wustl.edu	37	3	113795686	113795686	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	113795686	113795686	G	T	SNP	QTRTD1	ENST00000281273	human	ensembl	74_37	+1	known	missense	c.643	p.G215C	1.000	pfam_tRNA_ribo_trans-like,superfamily_tRNA_ribo_trans-like,tigrfam_tRNA_ribo_trans-like	pfam_tRNA_ribo_trans-like,superfamily_tRNA_ribo_trans-like,tigrfam_tRNA_ribo_trans-like	-	no_errors	QTRTD1	HGNC	ENSG00000151576				48	0	0	32	13	28.8889
POLQ	0	genome.wustl.edu	37	3	121248525	121248525	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	121248525	121248525	G	A	SNP	POLQ	ENST00000264233	human	ensembl	74_37	-1	known	nonsense	c.1075	p.R359*	0.969	superfamily_P-loop_NTPase,pfscan_Helicase_C	pfam_DNA-dir_DNA_pol_A_palm_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_RNaseH-like_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_DNA-dir_DNA_pol_A_palm_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_DNA_polymerase_A	-	no_errors	POLQ	HGNC	ENSG00000051341				127	0	0	73	23	23.9583
DTX3L	0	genome.wustl.edu	37	3	122288531	122288531	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	122288531	122288531	G	A	SNP	DTX3L	ENST00000296161	human	ensembl	74_37	+1	known	missense	c.1595	p.S532N	0.000	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	DTX3L	HGNC	ENSG00000163840				63	0	0	49	13	20.9677
DTX3L	0	genome.wustl.edu	37	3	122289427	122289427	+	Silent	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	122289427	122289427	T	C	SNP	DTX3L	ENST00000296161	human	ensembl	74_37	+1	known	silent	c.2061	p.F687	1.000	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	DTX3L	HGNC	ENSG00000163840				94	0	0	62	25	28.7356
HEG1	0	genome.wustl.edu	37	3	124731892	124731892	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	124731892	124731892	G	A	SNP	HEG1	ENST00000311127	human	ensembl	74_37	-1	known	missense	c.2531	p.T844I	0.001	NULL	pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	-	no_errors	HEG1	HGNC	ENSG00000173706				197	0	0	136	14	9.33333
ZNF148	0	genome.wustl.edu	37	3	124953119	124953119	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	124953119	124953119	T	G	SNP	ZNF148	ENST00000360647	human	ensembl	74_37	-1	known	missense	c.722	p.H241P	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF148	HGNC	ENSG00000163848				87	0	0	60	22	26.8293
UROC1	0	genome.wustl.edu	37	3	126219539	126219539	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	126219539	126219539	T	A	SNP	UROC1	ENST00000290868	human	ensembl	74_37	-1	known	missense	c.1144	p.S382C	1.000	pfam_Urocanase,superfamily_Urocanase,pirsf_Urocanase	pfam_Urocanase,superfamily_Urocanase,pirsf_Urocanase	-	no_errors	UROC1	HGNC	ENSG00000159650				125	0	0	96	32	25
UROC1	0	genome.wustl.edu	37	3	126220661	126220661	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	126220661	126220661	A	C	SNP	UROC1	ENST00000383579	human	ensembl	74_37	-1	novel	missense	c.1033	p.F345V	0.000	NULL	pfam_Urocanase,superfamily_Urocanase	-	no_errors	UROC1	HGNC	ENSG00000159650				39	0	0	17	12	41.3793
UROC1	0	genome.wustl.edu	37	3	126226620	126226620	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	126226620	126226620	C	T	SNP	UROC1	ENST00000290868	human	ensembl	74_37	-1	known	silent	c.567	p.T189	0.000	pfam_Urocanase,superfamily_Urocanase,pirsf_Urocanase	pfam_Urocanase,superfamily_Urocanase,pirsf_Urocanase	-	no_errors	UROC1	HGNC	ENSG00000159650				111	0	0	84	23	21.4953
RUVBL1	0	genome.wustl.edu	37	3	127806584	127806584	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	127806584	127806584	G	A	SNP	RUVBL1	ENST00000322623	human	ensembl	74_37	-1	known	missense	c.1084	p.R362W	1.000	pfam_TIP49_C,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_TIP49_C,pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,superfamily_NA-bd_OB-fold,smart_AAA+_ATPase	-	no_errors	RUVBL1	HGNC	ENSG00000175792				60	0	0	42	15	26.3158
EFCC1	0	genome.wustl.edu	37	3	128757721	128757721	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	128757721	128757721	C	T	SNP	EFCC1	ENST00000436022	human	ensembl	74_37	+1	known	silent	c.327	p.D109	0.092	NULL	NULL	-	no_errors	EFCC1	HGNC	ENSG00000114654				79	0	0	45	21	31.8182
IFT122	0	genome.wustl.edu	37	3	129233274	129233274	+	Silent	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	129233274	129233274	T	C	SNP	IFT122	ENST00000296266	human	ensembl	74_37	+1	known	silent	c.3183	p.G1061	0.013	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	IFT122	HGNC	ENSG00000163913				41	0	0	51	5	8.92857
PLXND1	0	genome.wustl.edu	37	3	129281738	129281738	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	129281738	129281738	G	A	SNP	PLXND1	ENST00000324093	human	ensembl	74_37	-1	known	missense	c.4717	p.R1573W	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXND1	HGNC	ENSG00000004399				27	0	0	16	8	33.3333
PLXND1	0	genome.wustl.edu	37	3	129292568	129292568	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	129292568	129292568	C	T	SNP	PLXND1	ENST00000324093	human	ensembl	74_37	-1	known	silent	c.2706	p.P902	0.879	pfam_IPT,superfamily_Ig_E-set,smart_IPT	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXND1	HGNC	ENSG00000004399				16	0	0	18	5	21.7391
COL6A5	0	genome.wustl.edu	37	3	130187927	130187927	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	130187927	130187927	A	T	SNP	COL6A5	ENST00000265379	human	ensembl	74_37	+1	known	missense	c.7079	p.D2360V	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A5	HGNC	ENSG00000172752				48	0	0	27	4	12.9032
COL6A6	0	genome.wustl.edu	37	3	130292809	130292809	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	130292809	130292809	T	A	SNP	COL6A6	ENST00000358511	human	ensembl	74_37	+1	known	missense	c.2987	p.I996N	0.983	NULL	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A6	HGNC	ENSG00000206384				24	0	0	19	8	29.6296
COL6A6	0	genome.wustl.edu	37	3	130307997	130307997	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	130307997	130307997	A	G	SNP	COL6A6	ENST00000358511	human	ensembl	74_37	+1	known	missense	c.4189	p.M1397V	0.000	pfam_Collagen	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A6	HGNC	ENSG00000206384				49	0	0	26	9	25.7143
EPHB1	0	genome.wustl.edu	37	3	134851736	134851736	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	134851736	134851736	C	T	SNP	EPHB1	ENST00000398015	human	ensembl	74_37	+1	known	missense	c.1142	p.P381L	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHB1	HGNC	ENSG00000154928				30	0	0	28	7	20
PIK3CB	0	genome.wustl.edu	37	3	138417775	138417775	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	138417775	138417775	A	G	SNP	PIK3CB	ENST00000289153	human	ensembl	74_37	-1	known	missense	c.1744	p.W582R	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_adapt-bd_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,superfamily_Kinase-like_dom,superfamily_C2_dom,superfamily_ARM-type_fold,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CB	HGNC	ENSG00000051382				122	0	0	89	24	21.2389
RNF7	0	genome.wustl.edu	37	3	141457324	141457324	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	141457324	141457324	C	T	SNP	RNF7	ENST00000273480	human	ensembl	74_37	+1	known	silent	c.141	p.C47	1.000	NULL	pfscan_Znf_RING	-	no_errors	RNF7	HGNC	ENSG00000114125				15	0	0	17	4	19.0476
C3orf20	0	genome.wustl.edu	37	3	14744763	14744763	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	14744763	14744763	G	A	SNP	C3orf20	ENST00000253697	human	ensembl	74_37	+1	known	missense	c.872	p.R291H	0.951	NULL	NULL	-	no_errors	C3orf20	HGNC	ENSG00000131379				116	0	0	80	26	24.5283
CP	0	genome.wustl.edu	37	3	148897376	148897376	+	Silent	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	148897376	148897376	T	C	SNP	CP	ENST00000264613	human	ensembl	74_37	-1	known	silent	c.2628	p.P876	0.464	pfam_Cu-oxidase_3,superfamily_Cupredoxin	pfam_Cu-oxidase_2,pfam_Cu-oxidase_3,pfam_Cu-oxidase,superfamily_Cupredoxin	-	no_errors	CP	HGNC	ENSG00000047457				42	0	0	37	5	11.9048
FGD5	0	genome.wustl.edu	37	3	14939591	14939591	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	14939591	14939591	C	T	SNP	FGD5	ENST00000285046	human	ensembl	74_37	+1	known	missense	c.3055	p.R1019C	0.950	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD5	HGNC	ENSG00000154783				68	0	0	65	15	18.75
FAM194A	0	genome.wustl.edu	37	3	150387183	150387183	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	150387183	150387183	T	C	SNP	FAM194A	ENST00000295910	human	ensembl	74_37	-1	known	missense	c.1399	p.T467A	0.026	NULL	NULL	-	no_errors	FAM194A	HGNC	ENSG00000163645				90	0	0	54	23	29.8701
DHX36	0	genome.wustl.edu	37	3	154011567	154011567	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	154011567	154011567	A	T	SNP	DHX36	ENST00000496811	human	ensembl	74_37	-1	known	missense	c.1640	p.I547K	1.000	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX36	HGNC	ENSG00000174953				52	0	0	39	8	17.0213
MLF1	0	genome.wustl.edu	37	3	158310241	158310241	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	158310241	158310241	C	T	SNP	MLF1	ENST00000495452	human	ensembl	74_37	+1	known	missense	c.131	p.T44I	0.985	NULL	NULL	-	no_errors	MLF1	HGNC	ENSG00000178053				67	0	0	43	12	21.8182
MLF1	0	genome.wustl.edu	37	3	158310320	158310320	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	158310320	158310320	G	T	SNP	MLF1	ENST00000392822	human	ensembl	74_37	+1	known	missense	c.193	p.G65W	0.943	pfam_Myeloid_leukemia_factor	pfam_Myeloid_leukemia_factor	-	no_errors	MLF1	HGNC	ENSG00000178053				92	0	0	62	15	19.4805
WDR49	0	genome.wustl.edu	37	3	167250683	167250683	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	167250683	167250683	C	A	SNP	WDR49	ENST00000308378	human	ensembl	74_37	-1	known	missense	c.981	p.L327F	0.163	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR49	HGNC	ENSG00000174776				42	0	0	34	7	17.0732
SLC2A2	0	genome.wustl.edu	37	3	170727811	170727811	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	170727811	170727811	A	G	SNP	SLC2A2	ENST00000469787	human	ensembl	74_37	-1	known	missense	c.169	p.F57L	0.270	NULL	pfam_Sub_transporter	-	no_errors	SLC2A2	HGNC	ENSG00000163581				66	0	0	42	8	16
ECT2	0	genome.wustl.edu	37	3	172486914	172486914	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	172486914	172486914	T	C	SNP	ECT2	ENST00000427830	human	ensembl	74_37	+1	known	missense	c.1316	p.I439T	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_BRCT_dom,superfamily_DH-domain,superfamily_BRCT_dom,smart_BRCT_dom,smart_DH-domain,pfscan_BRCT_dom,pfscan_DH-domain	-	no_errors	ECT2	HGNC	ENSG00000114346				55	0	0	55	7	11.2903
TRA2B	0	genome.wustl.edu	37	3	185636197	185636197	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	185636197	185636197	C	T	SNP	TRA2B	ENST00000453386	human	ensembl	74_37	-1	known	missense	c.812	p.R271H	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TRA2B	HGNC	ENSG00000136527				74	0	0	74	14	15.9091
MASP1	0	genome.wustl.edu	37	3	186953694	186953694	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	186953694	186953694	G	A	SNP	MASP1	ENST00000296280	human	ensembl	74_37	-1	known	silent	c.1965	p.G655	0.057	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_CUB_dom,pfam_Sushi_SCR_CCP,pfam_EGF-like_Ca-bd_dom,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_Sushi_SCR_CCP,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1	-	no_errors	MASP1	HGNC	ENSG00000127241				54	0	0	34	8	19.0476
MASP1	0	genome.wustl.edu	37	3	186974645	186974645	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	186974645	186974645	T	G	SNP	MASP1	ENST00000296280	human	ensembl	74_37	-1	known	missense	c.551	p.E184A	1.000	superfamily_CUB_dom	pfam_Peptidase_S1,pfam_CUB_dom,pfam_Sushi_SCR_CCP,pfam_EGF-like_Ca-bd_dom,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_Sushi_SCR_CCP,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1	-	no_errors	MASP1	HGNC	ENSG00000127241				63	0	0	41	17	29.3103
TP63	0	genome.wustl.edu	37	3	189526151	189526151	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	189526151	189526151	G	A	SNP	TP63	ENST00000264731	human	ensembl	74_37	+1	known	missense	c.415	p.A139T	1.000	NULL	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_SAM_2,superfamily_p53-like_TF_DNA-bd,superfamily_SAM/pointed,superfamily_p53_tetrameristn,smart_SAM,prints_p53_tumour_suppressor	-	no_errors	TP63	HGNC	ENSG00000073282				71	0	0	48	11	18.6441
CLDN16	0	genome.wustl.edu	37	3	190127802	190127802	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	190127802	190127802	T	C	SNP	CLDN16	ENST00000264734	human	ensembl	74_37	+1	known	missense	c.895	p.Y299H	1.000	NULL	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin16,prints_Claudin	-	no_errors	CLDN16	HGNC	ENSG00000113946				51	0	0	63	11	14.8649
CEP19	0	genome.wustl.edu	37	3	196435397	196435397	+	Splice_Site	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	196435397	196435397	A	G	SNP	CEP19	ENST00000409690	human	ensembl	74_37	-1	known	splice_site	c.142+2	e1+2	1.000	-	-	-	no_errors	CEP19	HGNC	ENSG00000174007				99	0	0	64	18	21.9512
DLG1	0	genome.wustl.edu	37	3	196867105	196867105	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	196867105	196867105	C	A	SNP	DLG1	ENST00000346964	human	ensembl	74_37	-1	known	nonsense	c.718	p.G240*	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pirsf_M-assoc_guanylate_kinase,pfscan_PDZ	pfam_GK/Ca_channel_bsu,pfam_PDZ,pfam_MAGUK_PEST_N,pfam_L27_1,pfam_PDZ_assoc,pfam_SH3_2,pfam_SH3_domain,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pirsf_M-assoc_guanylate_kinase,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	DLG1	HGNC	ENSG00000075711				136	0	0	88	17	16.1905
RARB	0	genome.wustl.edu	37	3	25502773	25502773	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	25502773	25502773	G	A	SNP	RARB	ENST00000404969	human	ensembl	74_37	+1	known	missense	c.268	p.V90I	1.000	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Nuc_orph_rcpt,prints_Retinoid-X_rcpt/HNF4	-	no_errors	RARB	HGNC	ENSG00000077092				47	0	0	50	15	23.0769
TOP2B	0	genome.wustl.edu	37	3	25665821	25665821	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	25665821	25665821	G	A	SNP	TOP2B	ENST00000264331	human	ensembl	74_37	-1	known	missense	c.2462	p.A821V	1.000	pfam_Topo_IIA_A/C,superfamily_Topo_IIA_like_dom,smart_Topo_IIA_A/C,prints_TopoII_euk	pfam_Topo_IIA_A/C,pfam_Topo_IIA_bsu_dom2,pfam_DTHCT,pfam_HATPase_ATP-bd,superfamily_Topo_IIA_like_dom,superfamily_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,smart_Topo_IIA,smart_Topo_IIA_A/C,prints_TopoII_euk,prints_Topo_IIA,prints_Transcrpt_fac_NFYB/HAP3	-	no_errors	TOP2B	HGNC	ENSG00000077097				140	0	0	109	23	17.4242
LINC00692	0	genome.wustl.edu	37	3	25900239	25900239	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	25900239	25900239	G	A	SNP	LINC00692	ENST00000451284	human	ensembl	74_37	-1	putative	missense	c.274	p.R92C	0.004	NULL	NULL	-	no_errors	LINC00692	HGNC	ENSG00000230891				31	0	0	20	5	20
LRRC3B	0	genome.wustl.edu	37	3	26751789	26751789	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	26751789	26751789	C	T	SNP	LRRC3B	ENST00000396641	human	ensembl	74_37	+1	known	missense	c.626	p.T209I	1.000	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC3B	HGNC	ENSG00000179796				37	0	0	26	6	18.75
SLC4A7	0	genome.wustl.edu	37	3	27453218	27453218	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	27453218	27453218	A	G	SNP	SLC4A7	ENST00000454389	human	ensembl	74_37	-1	known	missense	c.1681	p.F561L	1.000	tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A7	HGNC	ENSG00000033867				34	0	0	18	5	21.7391
SLC4A7	0	genome.wustl.edu	37	3	27463207	27463207	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	27463207	27463207	C	T	SNP	SLC4A7	ENST00000454389	human	ensembl	74_37	-1	known	missense	c.1330	p.E444K	1.000	pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A7	HGNC	ENSG00000033867				73	0	0	53	9	14.5161
CNOT10	0	genome.wustl.edu	37	3	32769301	32769301	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	32769301	32769301	A	G	SNP	CNOT10	ENST00000454516	human	ensembl	74_37	+1	known	missense	c.1334	p.Y445C	1.000	smart_TPR_repeat	pfam_TPR_1,smart_TPR_repeat	-	no_errors	CNOT10	HGNC	ENSG00000182973				62	0	0	26	7	21.2121
CNOT10	0	genome.wustl.edu	37	3	32800967	32800967	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	32800967	32800967	G	A	SNP	CNOT10	ENST00000454516	human	ensembl	74_37	+1	known	missense	c.1793	p.C598Y	1.000	NULL	pfam_TPR_1,smart_TPR_repeat	-	no_errors	CNOT10	HGNC	ENSG00000182973				434	0	0	333	65	16.3317
TMPPE	0	genome.wustl.edu	37	3	33134737	33134737	+	Silent	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	33134737	33134737	A	G	SNP	TMPPE	ENST00000342462	human	ensembl	74_37	-1	known	silent	c.951	p.G317	0.852	pfam_PEstase_dom	pfam_PEstase_dom	-	no_errors	TMPPE	HGNC	ENSG00000188167				100	1	0.990099	63	12	16
SUSD5	0	genome.wustl.edu	37	3	33194480	33194480	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	33194480	33194480	C	T	SNP	SUSD5	ENST00000309558	human	ensembl	74_37	-1	known	silent	c.1644	p.G548	0.012	NULL	pfam_Link,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Link,pfscan_Link,pfscan_Sushi_SCR_CCP	-	no_errors	SUSD5	HGNC	ENSG00000173705				30	0	0	17	12	41.3793
STAC	0	genome.wustl.edu	37	3	36485023	36485023	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	36485023	36485023	G	A	SNP	STAC	ENST00000273183	human	ensembl	74_37	+1	known	silent	c.279	p.T93	0.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_SH3_domain,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_Spectrin_alpha_SH3,prints_SH3_domain	-	no_errors	STAC	HGNC	ENSG00000144681				97	0	0	57	19	25
TRANK1	0	genome.wustl.edu	37	3	36897095	36897095	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	36897095	36897095	T	G	SNP	TRANK1	ENST00000429976	human	ensembl	74_37	-1	known	missense	c.3986	p.Y1329S	1.000	pfam_UvrD-like_ATP-bd,superfamily_P-loop_NTPase	pfam_UvrD-like_ATP-bd,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_TPR_repeat,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR-contain_dom	-	no_errors	TRANK1	HGNC	ENSG00000168016				99	0	0	56	20	26.3158
ACVR2B	0	genome.wustl.edu	37	3	38519934	38519934	+	Silent	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	38519934	38519934	T	C	SNP	ACVR2B	ENST00000352511	human	ensembl	74_37	+1	known	silent	c.591	p.A197	0.095	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_TGFB_receptor	-	no_errors	ACVR2B	HGNC	ENSG00000114739				30	0	0	21	8	27.5862
SCN10A	0	genome.wustl.edu	37	3	38802798	38802798	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	38802798	38802798	G	A	SNP	SCN10A	ENST00000449082	human	ensembl	74_37	-1	known	silent	c.768	p.C256	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN10A	HGNC	ENSG00000185313				68	0	0	52	7	11.8644
LRRN1	0	genome.wustl.edu	37	3	3886509	3886509	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	3886509	3886509	C	T	SNP	LRRN1	ENST00000319331	human	ensembl	74_37	+1	known	missense	c.184	p.R62C	1.000	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRRN1	HGNC	ENSG00000175928				132	0	0	83	29	25.8929
SNRK	0	genome.wustl.edu	37	3	43389492	43389492	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	43389492	43389492	G	A	SNP	SNRK	ENST00000296088	human	ensembl	74_37	+1	known	missense	c.1741	p.G581R	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	SNRK	HGNC	ENSG00000163788				20	0	0	17	4	19.0476
ELP6	0	genome.wustl.edu	37	3	47537600	47537600	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	47537600	47537600	C	T	SNP	ELP6	ENST00000296149	human	ensembl	74_37	-1	known	missense	c.760	p.V254M	0.996	NULL	pfam_UPF0405	-	no_errors	ELP6	HGNC	ENSG00000163832				63	0	0	43	9	17.3077
PLXNB1	0	genome.wustl.edu	37	3	48459755	48459755	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	48459755	48459755	A	G	SNP	PLXNB1	ENST00000296440	human	ensembl	74_37	-1	known	missense	c.3067	p.S1023P	1.000	superfamily_Plexin-like_fold,smart_Plexin-like_fold	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNB1	HGNC	ENSG00000164050				27	0	0	12	6	33.3333
COL7A1	0	genome.wustl.edu	37	3	48628013	48628013	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	48628013	48628013	C	T	SNP	COL7A1	ENST00000328333	human	ensembl	74_37	-1	known	silent	c.1785	p.P595	0.005	superfamily_Fibronectin_type3	pfam_Collagen,pfam_Fibronectin_type3,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL7A1	HGNC	ENSG00000114270				48	0	0	20	22	52.381
COL7A1	0	genome.wustl.edu	37	3	48630677	48630677	+	Silent	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	48630677	48630677	A	G	SNP	COL7A1	ENST00000328333	human	ensembl	74_37	-1	known	silent	c.540	p.P180	0.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Collagen,pfam_Fibronectin_type3,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL7A1	HGNC	ENSG00000114270				88	0	0	53	13	19.697
P4HTM	0	genome.wustl.edu	37	3	49038942	49038942	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	49038942	49038942	C	T	SNP	P4HTM	ENST00000343546	human	ensembl	74_37	+1	known	missense	c.508	p.R170C	1.000	smart_Pro_4_hyd_alph	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	P4HTM	HGNC	ENSG00000178467				37	0	0	25	9	26.4706
WDR6	0	genome.wustl.edu	37	3	49051263	49051263	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	49051263	49051263	G	A	SNP	WDR6	ENST00000395474	human	ensembl	74_37	+1	known	missense	c.2386	p.A796T	0.005	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Quino_amine_DH_bsu,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR6	HGNC	ENSG00000178252				46	0	0	31	9	22.5
BSN	0	genome.wustl.edu	37	3	49693858	49693858	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	49693858	49693858	C	T	SNP	BSN	ENST00000296452	human	ensembl	74_37	+1	known	missense	c.6869	p.A2290V	0.779	NULL	pfam_Znf_piccolo,superfamily_Znf_FYVE_PHD	-	no_errors	BSN	HGNC	ENSG00000164061				47	0	0	31	13	29.5455
RNF123	0	genome.wustl.edu	37	3	49736537	49736537	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	49736537	49736537	C	T	SNP	RNF123	ENST00000327697	human	ensembl	74_37	+1	known	missense	c.763	p.R255C	1.000	superfamily_ConA-like_lec_gl_sf	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,smart_Znf_RING,pfscan_B30.2/SPRY,pfscan_Znf_RING	-	no_errors	RNF123	HGNC	ENSG00000164068				59	0	0	61	15	19.7368
AMIGO3	0	genome.wustl.edu	37	3	49756812	49756812	+	Silent	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	49756812	49756812	A	G	SNP	AMIGO3	ENST00000320431	human	ensembl	74_37	-1	known	silent	c.87	p.R29	0.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	AMIGO3	HGNC	ENSG00000176020				40	0	0	43	16	27.1186
ABHD14B	0	genome.wustl.edu	37	3	52003908	52003908	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	52003908	52003908	C	T	SNP	ABHD14B	ENST00000461108	human	ensembl	74_37	-1	putative	silent	c.504	p.V168	0.000	NULL	NULL	-	no_errors	ABHD14B	HGNC	ENSG00000114779				70	0	0	37	12	24.4898
BAP1	0	genome.wustl.edu	37	3	52443885	52443885	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	52443885	52443885	C	A	SNP	BAP1	ENST00000460680	human	ensembl	74_37	-1	known	missense	c.10	p.G4C	1.000	pfam_Peptidase_C12	pfam_Peptidase_C12,prints_Peptidase_C12	-	no_errors	BAP1	HGNC	ENSG00000163930				11	0	0	19	4	17.3913
EDEM1	0	genome.wustl.edu	37	3	5244713	5244713	+	Silent	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	5244713	5244713	T	C	SNP	EDEM1	ENST00000256497	human	ensembl	74_37	+1	known	silent	c.921	p.G307	0.224	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	EDEM1	HGNC	ENSG00000134109				111	0	0	77	24	23.7624
SEMA3G	0	genome.wustl.edu	37	3	52472110	52472110	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	52472110	52472110	A	G	SNP	SEMA3G	ENST00000231721	human	ensembl	74_37	-1	known	missense	c.1615	p.Y539H	1.000	pfam_Plexin_repeat,superfamily_Plexin-like_fold,smart_Plexin-like_fold	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA3G	HGNC	ENSG00000010319				15	0	0	23	4	14.8148
NISCH	0	genome.wustl.edu	37	3	52491918	52491918	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	52491918	52491918	C	T	SNP	NISCH	ENST00000345716	human	ensembl	74_37	+1	known	silent	c.153	p.S51	0.978	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Phox,pfam_Leu-rich_rpt,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	NISCH	HGNC	ENSG00000010322				203	0	0	99	69	41.0714
NISCH	0	genome.wustl.edu	37	3	52522418	52522418	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	52522418	52522418	C	T	SNP	NISCH	ENST00000345716	human	ensembl	74_37	+1	known	silent	c.2910	p.H970	0.680	NULL	pfam_Phox,pfam_Leu-rich_rpt,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	NISCH	HGNC	ENSG00000010322				50	0	0	60	14	18.9189
DNASE1L3	0	genome.wustl.edu	37	3	58183580	58183580	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	58183580	58183580	C	T	SNP	DNASE1L3	ENST00000318316	human	ensembl	74_37	-1	known	silent	c.672	p.T224	0.007	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_DNase_I,pirsf_DNase_I,prints_DNase_I	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_DNase_I,pirsf_DNase_I,prints_DNase_I	-	no_errors	DNASE1L3	HGNC	ENSG00000163687				63	0	0	32	11	25.5814
ACOX2	0	genome.wustl.edu	37	3	58516206	58516206	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	58516206	58516206	G	A	SNP	ACOX2	ENST00000302819	human	ensembl	74_37	-1	known	missense	c.979	p.R327W	0.253	superfamily_AcylCo_DH/oxidase_C,pirsf_Acyl-CoA_oxidase	pfam_Acyl-CoA_oxidase_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,superfamily_AcylCo_DH/oxidase_C,superfamily_AcylCoA_DH/oxidase_NM_dom,pirsf_Acyl-CoA_oxidase	-	no_errors	ACOX2	HGNC	ENSG00000168306				35	0	0	22	11	33.3333
GRM7	0	genome.wustl.edu	37	3	6903265	6903265	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	6903265	6903265	G	A	SNP	GRM7	ENST00000402647	human	ensembl	74_37	+1	known	missense	c.190	p.G64R	1.000	superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_7,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4	-	no_errors	GRM7	HGNC	ENSG00000196277				14	0	0	5	5	50
LMOD3	0	genome.wustl.edu	37	3	69171388	69171388	+	Silent	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	69171388	69171388	C	A	SNP	LMOD3	ENST00000420581	human	ensembl	74_37	-1	known	silent	c.150	p.V50	1.000	pfam_Tropomodulin	pfam_Tropomodulin	-	no_errors	LMOD3	HGNC	ENSG00000163380				36	0	0	22	8	26.6667
PDZRN3	0	genome.wustl.edu	37	3	73433392	73433392	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	73433392	73433392	G	A	SNP	PDZRN3	ENST00000263666	human	ensembl	74_37	-1	known	silent	c.2325	p.P775	0.985	NULL	pfam_PDZ,pfam_Znf_C3HC4_RING-type,superfamily_PDZ,superfamily_TRAF-like,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	PDZRN3	HGNC	ENSG00000121440				32	0	0	24	6	20
ROBO1	0	genome.wustl.edu	37	3	78663931	78663931	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	78663931	78663931	C	T	SNP	ROBO1	ENST00000464233	human	ensembl	74_37	-1	known	silent	c.4302	p.A1434	0.458	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO1	HGNC	ENSG00000169855				19	0	0	13	6	31.5789
POU1F1	0	genome.wustl.edu	37	3	87322591	87322591	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	87322591	87322591	C	T	SNP	POU1F1	ENST00000344265	human	ensembl	74_37	-1	known	silent	c.198	p.S66	0.997	NULL	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU	-	no_errors	POU1F1	HGNC	ENSG00000064835				47	0	0	25	5	16.6667
OR5K4	0	genome.wustl.edu	37	3	98073327	98073327	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	98073327	98073327	C	T	SNP	OR5K4	ENST00000354924	human	ensembl	74_37	+1	known	silent	c.630	p.T210	0.004	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5K4	HGNC	ENSG00000196098				57	0	0	49	9	15.5172
OR5K3	0	genome.wustl.edu	37	3	98110293	98110293	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	98110293	98110293	G	A	SNP	OR5K3	ENST00000383695	human	ensembl	74_37	+1	known	missense	c.784	p.A262T	0.185	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5K3	HGNC	ENSG00000206536				71	0	0	56	20	26.3158
TADA3	0	genome.wustl.edu	37	3	9822157	9822157	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	9822157	9822157	A	C	SNP	TADA3	ENST00000301964	human	ensembl	74_37	-1	known	missense	c.1183	p.F395V	1.000	pfam_Histone_AcTrfase_su3	pfam_Histone_AcTrfase_su3	-	no_errors	TADA3	HGNC	ENSG00000171148				37	0	0	37	9	19.5652
ST3GAL6	0	genome.wustl.edu	37	3	98510829	98510829	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	98510829	98510829	A	T	SNP	ST3GAL6	ENST00000394162	human	ensembl	74_37	+1	known	missense	c.901	p.M301L	1.000	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST3GAL6	HGNC	ENSG00000064225				97	0	0	71	23	24.4681
MANBA	0	genome.wustl.edu	37	4	103556169	103556169	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	4	103556169	103556169	C	T	SNP	MANBA	ENST00000226578	human	ensembl	74_37	-1	known	missense	c.2191	p.V731M	0.000	NULL	pfam_Glyco_hydro_2_N,pfam_Glyco_hydro_2_TIM,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,superfamily_Glyco_hydro_2_Ig-like	-	no_errors	MANBA	HGNC	ENSG00000109323				42	0	0	21	9	30
GSTCD	0	genome.wustl.edu	37	4	106746920	106746920	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	4	106746920	106746920	C	T	SNP	GSTCD	ENST00000360505	human	ensembl	74_37	+1	known	missense	c.1493	p.A498V	1.000	pfam_rRNA_ssu_MeTfrase_G,pfam_Small_mtfrase_dom	pfam_rRNA_ssu_MeTfrase_G,pfam_Small_mtfrase_dom,superfamily_Glutathione-S-Trfase_C-like	-	no_errors	GSTCD	HGNC	ENSG00000138780				66	0	0	47	7	12.963
TBCK	0	genome.wustl.edu	37	4	107170076	107170076	+	Splice_Site	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	4	107170076	107170076	A	G	SNP	TBCK	ENST00000273980	human	ensembl	74_37	-1	known	splice_site	c.720+2	e7+2	1.000	-	-	-	no_errors	TBCK	HGNC	ENSG00000145348				53	0	0	15	9	37.5
CFI	0	genome.wustl.edu	37	4	110667573	110667573	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	4	110667573	110667573	C	T	SNP	CFI	ENST00000394634	human	ensembl	74_37	-1	known	missense	c.1234	p.V412M	0.024	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_LDrepeatLR_classA_rpt,pfam_SRCR,superfamily_Trypsin-like_Pept_dom,superfamily_Srcr_rcpt-rel,superfamily_LDrepeatLR_classA_rpt,smart_FacI_MAC,smart_Srcr_rcpt-rel,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1,pfscan_LDrepeatLR_classA_rpt,pfscan_SRCR,pfscan_Peptidase_S1,prints_Peptidase_S1A,prints_LDrepeatLR_classA_rpt	-	no_errors	CFI	HGNC	ENSG00000205403				45	0	0	23	10	30.303
USP53	0	genome.wustl.edu	37	4	120177654	120177654	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	4	120177654	120177654	G	A	SNP	USP53	ENST00000274030	human	ensembl	74_37	+1	known	missense	c.545	p.R182Q	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP53	HGNC	ENSG00000145390				73	0	0	39	11	22
PDE5A	0	genome.wustl.edu	37	4	120419827	120419827	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	4	120419827	120419827	A	G	SNP	PDE5A	ENST00000354960	human	ensembl	74_37	-1	known	missense	c.2557	p.W853R	1.000	NULL	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE5A	HGNC	ENSG00000138735				106	0	0	66	18	21.4286
PDE5A	0	genome.wustl.edu	37	4	120484020	120484020	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	4	120484020	120484020	A	G	SNP	PDE5A	ENST00000354960	human	ensembl	74_37	-1	known	missense	c.1099	p.C367R	1.000	pfam_GAF,smart_GAF	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE5A	HGNC	ENSG00000138735				60	0	0	30	22	42.3077
KIAA1109	0	genome.wustl.edu	37	4	123227177	123227177	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	4	123227177	123227177	C	T	SNP	KIAA1109	ENST00000264501	human	ensembl	74_37	+1	known	missense	c.9818	p.A3273V	1.000	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688				102	0	0	55	16	22.5352
FAT4	0	genome.wustl.edu	37	4	126373243	126373243	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	4	126373243	126373243	G	T	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	missense	c.11072	p.S3691I	0.960	superfamily_Cadherin-like	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				117	0	0	76	28	26.9231
PCDH10	0	genome.wustl.edu	37	4	134071765	134071765	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	4	134071765	134071765	G	A	SNP	PCDH10	ENST00000264360	human	ensembl	74_37	+1	known	missense	c.470	p.R157H	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650				75	0	0	36	16	30.7692
MAML3	0	genome.wustl.edu	37	4	140811854	140811854	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	4	140811854	140811854	T	C	SNP	MAML3	ENST00000509479	human	ensembl	74_37	-1	known	missense	c.736	p.N246D	1.000	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML3	HGNC	ENSG00000196782				104	0	0	66	15	18.5185
RPS3A	0	genome.wustl.edu	37	4	152024153	152024153	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	4	152024153	152024153	G	A	SNP	RPS3A	ENST00000274065	human	ensembl	74_37	+1	known	missense	c.485	p.R162H	1.000	pfam_Ribosomal_S3Ae	pfam_Ribosomal_S3Ae	-	no_errors	RPS3A	HGNC	ENSG00000145425				36	0	0	12	5	29.4118
PRSS48	0	genome.wustl.edu	37	4	152212409	152212409	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	4	152212409	152212409	C	T	SNP	PRSS48	ENST00000455694	human	ensembl	74_37	+1	known	missense	c.791	p.A264V	0.001	superfamily_Trypsin-like_Pept_dom,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	PRSS48	HGNC	ENSG00000189099				138	0	0	56	19	25.3333
FAM198B	0	genome.wustl.edu	37	4	159092437	159092437	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	4	159092437	159092437	G	A	SNP	FAM198B	ENST00000393807	human	ensembl	74_37	-1	known	missense	c.91	p.R31C	1.000	NULL	NULL	-	no_errors	FAM198B	HGNC	ENSG00000164125				37	0	0	11	8	42.1053
RAPGEF2	0	genome.wustl.edu	37	4	160274685	160274685	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	4	160274685	160274685	A	G	SNP	RAPGEF2	ENST00000264431	human	ensembl	74_37	+1	known	missense	c.3655	p.T1219A	0.995	NULL	pfam_RasGRF_CDC25,pfam_Ras-assoc,pfam_Ras-like_Gua-exchang_fac_N,pfam_PDZ,pfam_cNMP-bd_dom,superfamily_Ras_GEF_dom,superfamily_PDZ,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ras-like_Gua-exchang_fac_N,smart_PDZ,smart_Ras-assoc,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_PDZ,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF2	HGNC	ENSG00000109756				79	0	0	54	5	8.47458
KLHL2	0	genome.wustl.edu	37	4	166232663	166232663	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	4	166232663	166232663	C	A	SNP	KLHL2	ENST00000226725	human	ensembl	74_37	+1	known	missense	c.1285	p.H429N	1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL2	HGNC	ENSG00000109466				120	0	0	62	18	22.5
PALLD	0	genome.wustl.edu	37	4	169433418	169433418	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	4	169433418	169433418	C	T	SNP	PALLD	ENST00000261509	human	ensembl	74_37	+1	known	missense	c.763	p.R255C	0.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PALLD	HGNC	ENSG00000129116				81	0	0	40	14	25.9259
AADAT	0	genome.wustl.edu	37	4	171009703	171009703	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	4	171009703	171009703	C	T	SNP	AADAT	ENST00000509167	human	ensembl	74_37	-1	known	missense	c.92	p.S31N	0.000	superfamily_PyrdxlP-dep_Trfase	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	-	no_errors	AADAT	HGNC	ENSG00000109576				88	0	0	47	13	21.6667
GALNTL6	0	genome.wustl.edu	37	4	173942662	173942662	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	4	173942662	173942662	C	T	SNP	GALNTL6	ENST00000506823	human	ensembl	74_37	+1	known	silent	c.1524	p.P508	0.378	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNTL6	HGNC	ENSG00000174473				118	0	0	57	21	26.9231
STOX2	0	genome.wustl.edu	37	4	184930482	184930482	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	4	184930482	184930482	T	A	SNP	STOX2	ENST00000308497	human	ensembl	74_37	+1	known	missense	c.491	p.I164K	1.000	NULL	pfam_Storkhead-box_winged-helix	-	no_errors	STOX2	HGNC	ENSG00000173320				53	0	0	37	17	31.4815
IRF2	0	genome.wustl.edu	37	4	185339859	185339859	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	4	185339859	185339859	T	G	SNP	IRF2	ENST00000393593	human	ensembl	74_37	-1	known	missense	c.191	p.K64T	1.000	pfam_Interferon_reg_fact_DNA-bd_dom,smart_Interferon_reg_fact_DNA-bd_dom,pirsf_Interferon_reg_fac-1/2,prints_Interferon_reg_fact_DNA-bd_dom	pfam_Interferon_reg_fact_DNA-bd_dom,smart_Interferon_reg_fact_DNA-bd_dom,pirsf_Interferon_reg_fac-1/2,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF2	HGNC	ENSG00000168310				29	0	0	17	6	26.087
FAT1	0	genome.wustl.edu	37	4	187540301	187540301	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	4	187540301	187540301	A	G	SNP	FAT1	ENST00000441802	human	ensembl	74_37	-1	known	missense	c.7439	p.V2480A	0.175	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857				280	0	0	165	11	6.25
ZFYVE28	0	genome.wustl.edu	37	4	2339147	2339147	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	4	2339147	2339147	C	T	SNP	ZFYVE28	ENST00000290974	human	ensembl	74_37	-1	known	missense	c.598	p.E200K	1.000	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE28	HGNC	ENSG00000159733				10	0	0	4	6	60
RBPJ	0	genome.wustl.edu	37	4	26431567	26431567	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	4	26431567	26431567	C	T	SNP	RBPJ	ENST00000342295	human	ensembl	74_37	+1	known	silent	c.975	p.G325	0.061	pfam_Beta-trefoil_DNA-bd_dom,superfamily_Beta-trefoil_DNA-bd_dom	pfam_Beta-trefoil_DNA-bd_dom,pfam_LAG1_DNA-bd,pfam_IPT,superfamily_Beta-trefoil_DNA-bd_dom,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set	-	no_errors	RBPJ	HGNC	ENSG00000168214				61	0	0	36	11	23.4043
RGS12	0	genome.wustl.edu	37	4	3430399	3430399	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	4	3430399	3430399	A	G	SNP	RGS12	ENST00000344733	human	ensembl	74_37	+1	known	missense	c.3526	p.K1176E	1.000	NULL	pfam_Raf-like_ras-bd,pfam_RGS_dom,pfam_PDZ,pfam_GoLoco_motif,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_PTB/PI_dom,smart_Regulat_G_prot_signal_superfam,smart_Raf-like_ras-bd,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_PDZ,pfscan_PTB/PI_dom,pfscan_Raf-like_ras-bd,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS12	HGNC	ENSG00000159788				51	0	0	36	11	23.4043
ATP8A1	0	genome.wustl.edu	37	4	42580304	42580304	+	Silent	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	4	42580304	42580304	T	C	SNP	ATP8A1	ENST00000381668	human	ensembl	74_37	-1	known	silent	c.1101	p.K367	1.000	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP8A1	HGNC	ENSG00000124406				58	0	0	26	8	23.5294
FRYL	0	genome.wustl.edu	37	4	48545976	48545976	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	4	48545976	48545976	G	T	SNP	FRYL	ENST00000358350	human	ensembl	74_37	-1	known	missense	c.5440	p.L1814M	0.993	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FRYL	HGNC	ENSG00000075539				61	0	0	30	11	26.8293
USP46	0	genome.wustl.edu	37	4	53492381	53492381	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	4	53492381	53492381	T	C	SNP	USP46	ENST00000441222	human	ensembl	74_37	-1	known	missense	c.365	p.H122R	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP46	HGNC	ENSG00000109189				43	0	0	23	11	32.3529
NMU	0	genome.wustl.edu	37	4	56471505	56471505	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	4	56471505	56471505	C	T	SNP	NMU	ENST00000264218	human	ensembl	74_37	-1	known	silent	c.372	p.V124	0.997	NULL	pfam_NMU_C,smart_NMU_C	-	no_errors	NMU	HGNC	ENSG00000109255				100	0	0	53	21	28.3784
EVC	0	genome.wustl.edu	37	4	5720985	5720985	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	4	5720985	5720985	C	T	SNP	EVC	ENST00000264956	human	ensembl	74_37	+1	known	missense	c.185	p.T62I	0.001	NULL	NULL	-	no_errors	EVC	HGNC	ENSG00000072840				136	0	0	61	21	25.6098
PDE6B	0	genome.wustl.edu	37	4	628573	628573	+	Silent	SNP	A	A	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	4	628573	628573	A	C	SNP	PDE6B	ENST00000496514	human	ensembl	74_37	+1	known	silent	c.576	p.A192	0.006	pfam_GAF,smart_GAF	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE6B	HGNC	ENSG00000133256				57	0	0	25	7	21.875
UBA6	0	genome.wustl.edu	37	4	68492086	68492086	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	4	68492086	68492086	G	A	SNP	UBA6	ENST00000322244	human	ensembl	74_37	-1	known	missense	c.2510	p.A837V	1.000	superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_UBQ-activ_enz_E1	pfam_ThiF_NAD_FAD-bd,pfam_Ub-activating_enz_e1_C,pfam_UBact_repeat,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1	-	no_errors	UBA6	HGNC	ENSG00000033178				46	0	0	19	9	32.1429
GRPEL1	0	genome.wustl.edu	37	4	7064112	7064112	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	4	7064112	7064112	C	T	SNP	GRPEL1	ENST00000264954	human	ensembl	74_37	-1	known	missense	c.307	p.G103S	1.000	pfam_GrpE	pfam_GrpE,superfamily_GrpE_head,prints_GrpE	-	no_errors	GRPEL1	HGNC	ENSG00000109519				105	0	0	59	26	30.5882
SULT1E1	0	genome.wustl.edu	37	4	70723269	70723269	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	4	70723269	70723269	C	T	SNP	SULT1E1	ENST00000226444	human	ensembl	74_37	-1	known	missense	c.94	p.A32T	0.000	superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	SULT1E1	HGNC	ENSG00000109193				90	0	0	39	12	23.5294
MUC7	0	genome.wustl.edu	37	4	71346558	71346558	+	Silent	SNP	A	A	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	4	71346558	71346558	A	C	SNP	MUC7	ENST00000304887	human	ensembl	74_37	+1	known	silent	c.97	p.R33	0.000	NULL	NULL	-	no_errors	MUC7	HGNC	ENSG00000171195				136	0	0	84	26	23.6364
PF4V1	0	genome.wustl.edu	37	4	74719777	74719777	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	4	74719777	74719777	A	T	SNP	PF4V1	ENST00000226524	human	ensembl	74_37	+1	known	missense	c.253	p.I85F	0.089	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom,prints_Chemokine_CXC	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom,prints_Chemokine_CXC	-	no_errors	PF4V1	HGNC	ENSG00000109272				73	0	0	41	14	25.4545
G3BP2	0	genome.wustl.edu	37	4	76570792	76570792	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	4	76570792	76570792	C	A	SNP	G3BP2	ENST00000359707	human	ensembl	74_37	-1	known	missense	c.1271	p.R424L	1.000	NULL	pfam_NTF2,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	G3BP2	HGNC	ENSG00000138757				86	0	0	42	11	20.7547
PPEF2	0	genome.wustl.edu	37	4	76797721	76797721	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	4	76797721	76797721	A	G	SNP	PPEF2	ENST00000286719	human	ensembl	74_37	-1	known	missense	c.1039	p.F347L	0.996	pirsf_Ser/Thr-Pase_EF-hand_contain,pfam_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase	pirsf_Ser/Thr-Pase_EF-hand_contain,pfam_PEstase_dom,pfam_PPP_dom,smart_Ser/Thr-sp_prot-phosphatase,smart_EF_hand_dom,prints_Ser/Thr-sp_prot-phosphatase,pfscan_EF_hand_dom	-	no_errors	PPEF2	HGNC	ENSG00000156194				37	0	0	15	5	25
RASGEF1B	0	genome.wustl.edu	37	4	82377784	82377784	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	4	82377784	82377784	C	T	SNP	RASGEF1B	ENST00000436139	human	ensembl	74_37	-1	putative	silent	c.459	p.A153	0.001	superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,pfscan_Ras-like_Gua-exchang_fac_N	pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGEF1B	HGNC	ENSG00000138670				64	0	0	35	7	16.6667
PDLIM5	0	genome.wustl.edu	37	4	95496980	95496980	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	4	95496980	95496980	G	A	SNP	PDLIM5	ENST00000317968	human	ensembl	74_37	+1	known	missense	c.505	p.V169I	1.000	NULL	pfam_Znf_LIM,pfam_PDZ,superfamily_PDZ,smart_PDZ,smart_Znf_LIM,pfscan_Znf_LIM,pfscan_PDZ	-	no_errors	PDLIM5	HGNC	ENSG00000163110				147	0	0	56	27	32.5301
EFNA5	0	genome.wustl.edu	37	5	106763016	106763016	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	106763016	106763016	G	A	SNP	EFNA5	ENST00000333274	human	ensembl	74_37	-1	known	missense	c.320	p.S107F	1.000	pfam_Ephrin,superfamily_Cupredoxin	pfam_Ephrin,superfamily_Cupredoxin,prints_Ephrin	-	no_errors	EFNA5	HGNC	ENSG00000184349				80	0	0	51	17	25
SLC12A7	0	genome.wustl.edu	37	5	1081765	1081765	+	Silent	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	1081765	1081765	T	C	SNP	SLC12A7	ENST00000264930	human	ensembl	74_37	-1	known	silent	c.1224	p.A408	0.000	tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A7	HGNC	ENSG00000113504				45	0	0	24	11	31.4286
EPB41L4A	0	genome.wustl.edu	37	5	111575375	111575375	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	111575375	111575375	C	T	SNP	EPB41L4A	ENST00000261486	human	ensembl	74_37	-1	known	missense	c.947	p.R316H	0.988	pfam_FERM-adjacent	pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L4A	HGNC	ENSG00000129595				26	0	0	12	6	33.3333
EPB41L4A	0	genome.wustl.edu	37	5	111576502	111576502	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	111576502	111576502	G	A	SNP	EPB41L4A	ENST00000261486	human	ensembl	74_37	-1	known	silent	c.801	p.N267	0.999	pfam_FERM_PH-like_C,pfscan_FERM_domain	pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L4A	HGNC	ENSG00000129595				44	0	0	16	7	30.4348
KCNN2	0	genome.wustl.edu	37	5	113698843	113698843	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	113698843	113698843	G	A	SNP	KCNN2	ENST00000264773	human	ensembl	74_37	+1	known	missense	c.371	p.R124Q	1.000	pfam_K_chnl_Ca-activ_SK,prints_K_chnl_Ca-activ_SK	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_2pore_dom_K_chnl_dom,superfamily_CaM-bd_dom,prints_K_chnl_Ca-activ_SK	-	no_errors	KCNN2	HGNC	ENSG00000080709				14	0	0	6	6	50
TICAM2	0	genome.wustl.edu	37	5	114916761	114916761	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	114916761	114916761	C	T	SNP	TICAM2	ENST00000408996	human	ensembl	74_37	-1	known	missense	c.700	p.V234M	0.000	NULL	pfam_GOLD,pfam_TIR_dom,superfamily_GOLD,superfamily_TIR_dom,pfscan_GOLD,pfscan_TIR_dom	-	no_errors	TICAM2	HGNC	ENSG00000243414				282	0	0	151	44	22.5641
HSD17B4	0	genome.wustl.edu	37	5	118792054	118792054	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	118792054	118792054	T	C	SNP	HSD17B4	ENST00000504811	human	ensembl	74_37	+1	putative	missense	c.113	p.V38A	0.952	NULL	pfam_MaoC_dom,pfam_DH_sc/Rdtase_SDR,pfam_SCP2_sterol-bd_dom,pfam_PKS_KR,superfamily_SCP2_sterol-bd_dom,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR,prints_DHB_DH	-	no_errors	HSD17B4	HGNC	ENSG00000133835				88	0	0	50	17	25.3731
LOX	0	genome.wustl.edu	37	5	121409818	121409818	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	121409818	121409818	C	T	SNP	LOX	ENST00000231004	human	ensembl	74_37	-1	known	missense	c.925	p.A309T	1.000	pfam_Lysyl_oxidase,prints_Lysyl_oxidase	pfam_Lysyl_oxidase,prints_Lysyl_oxidase	-	no_errors	LOX	HGNC	ENSG00000113083				98	0	0	30	15	33.3333
RAD50	0	genome.wustl.edu	37	5	131972826	131972826	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	131972826	131972826	A	G	SNP	RAD50	ENST00000265335	human	ensembl	74_37	+1	known	missense	c.3409	p.S1137G	1.000	superfamily_P-loop_NTPase,tigrfam_Rad50_eukaryotes	pfam_Rad50_Zn_hook,superfamily_P-loop_NTPase,superfamily_Prefoldin,pfscan_Zn_hook_Rad50,tigrfam_Rad50_eukaryotes	-	no_errors	RAD50	HGNC	ENSG00000113522				199	0	0	115	34	22.8188
AFF4	0	genome.wustl.edu	37	5	132232456	132232456	+	Silent	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	132232456	132232456	T	C	SNP	AFF4	ENST00000265343	human	ensembl	74_37	-1	known	silent	c.1866	p.R622	1.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF4	HGNC	ENSG00000072364				47	0	0	30	6	16.6667
CLPTM1L	0	genome.wustl.edu	37	5	1334411	1334411	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	1334411	1334411	G	A	SNP	CLPTM1L	ENST00000320895	human	ensembl	74_37	-1	known	missense	c.884	p.A295V	0.997	pfam_CLPTM1	pfam_CLPTM1	-	no_errors	CLPTM1L	HGNC	ENSG00000049656				44	0	0	22	12	35.2941
SMAD5	0	genome.wustl.edu	37	5	135510101	135510101	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	135510101	135510101	C	T	SNP	SMAD5	ENST00000545279	human	ensembl	74_37	+1	known	missense	c.1034	p.A345V	1.000	pfam_SMAD_dom_Dwarfin-type,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,smart_SMAD_dom_Dwarfin-type,pfscan_SMAD_dom_Dwarfin-type	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD5	HGNC	ENSG00000113658				103	0	0	44	14	24.1379
TRPC7	0	genome.wustl.edu	37	5	135692700	135692700	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	135692700	135692700	G	A	SNP	TRPC7	ENST00000513104	human	ensembl	74_37	-1	known	missense	c.376	p.L126F	1.000	superfamily_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,pfam_PKD1_2_channel,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,prints_TRPC7_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC7	HGNC	ENSG00000069018				29	0	0	18	4	18.1818
KDM3B	0	genome.wustl.edu	37	5	137717276	137717276	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	137717276	137717276	C	T	SNP	KDM3B	ENST00000314358	human	ensembl	74_37	+1	known	silent	c.777	p.S259	0.040	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM3B	HGNC	ENSG00000120733				54	0	0	19	10	34.4828
TMCO6	0	genome.wustl.edu	37	5	140024251	140024251	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	140024251	140024251	C	T	SNP	TMCO6	ENST00000252100	human	ensembl	74_37	+1	known	silent	c.1312	p.L438	0.079	superfamily_ARM-type_fold	superfamily_ARM-type_fold,smart_Armadillo,pfscan_Importin-a_IBB	-	no_errors	TMCO6	HGNC	ENSG00000113119				138	0	0	116	7	5.69106
PCDHA1	0	genome.wustl.edu	37	5	140165915	140165915	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	140165915	140165915	C	A	SNP	PCDHA1	ENST00000504120	human	ensembl	74_37	+1	known	missense	c.40	p.L14M	0.609	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA1	HGNC	ENSG00000204970				68	0	0	33	13	28.2609
PCDHA3	0	genome.wustl.edu	37	5	140181913	140181913	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	140181913	140181913	C	T	SNP	PCDHA3	ENST00000522353	human	ensembl	74_37	+1	known	silent	c.1131	p.R377	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA3	HGNC	ENSG00000255408				118	0	0	56	16	22.2222
PCDHA4	0	genome.wustl.edu	37	5	140188818	140188818	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	140188818	140188818	G	A	SNP	PCDHA4	ENST00000530339	human	ensembl	74_37	+1	known	silent	c.2046	p.A682	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA4	HGNC	ENSG00000204967				51	0	0	22	13	37.1429
PCDHA7	0	genome.wustl.edu	37	5	140215781	140215781	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	140215781	140215781	G	A	SNP	PCDHA7	ENST00000525929	human	ensembl	74_37	+1	known	missense	c.1813	p.A605T	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA7	HGNC	ENSG00000204963				72	0	0	50	16	24.2424
PCDHA9	0	genome.wustl.edu	37	5	140229616	140229616	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	140229616	140229616	G	A	SNP	PCDHA9	ENST00000532602	human	ensembl	74_37	+1	known	silent	c.1536	p.A512	0.996	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA9	HGNC	ENSG00000204961				71	0	0	40	7	14.8936
PCDHA10	0	genome.wustl.edu	37	5	140236079	140236079	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	140236079	140236079	C	A	SNP	PCDHA10	ENST00000307360	human	ensembl	74_37	+1	known	missense	c.446	p.S149Y	0.157	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA10	HGNC	ENSG00000250120				176	1	0.564972	102	39	27.6596
PCDHA11	0	genome.wustl.edu	37	5	140249397	140249397	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	140249397	140249397	G	A	SNP	PCDHA11	ENST00000398640	human	ensembl	74_37	+1	known	missense	c.709	p.D237N	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA11	HGNC	ENSG00000249158				27	0	0	15	12	44.4444
PCDHB5	0	genome.wustl.edu	37	5	140516378	140516378	+	Silent	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	140516378	140516378	C	A	SNP	PCDHB5	ENST00000231134	human	ensembl	74_37	+1	known	silent	c.1362	p.S454	0.911	superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB5	HGNC	ENSG00000113209				173	1	0.574713	98	33	25.1908
PCDHB11	0	genome.wustl.edu	37	5	140581504	140581504	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	140581504	140581504	G	A	SNP	PCDHB11	ENST00000354757	human	ensembl	74_37	+1	known	silent	c.2157	p.A719	0.052	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHB11	HGNC	ENSG00000197479				94	0	0	53	14	20.8955
PCDHB15	0	genome.wustl.edu	37	5	140626516	140626516	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	140626516	140626516	C	T	SNP	PCDHB15	ENST00000231173	human	ensembl	74_37	+1	known	missense	c.1370	p.T457I	0.035	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB15	HGNC	ENSG00000113248				114	0	0	53	15	22.0588
PCDHGA10	0	genome.wustl.edu	37	5	140794641	140794641	+	Silent	SNP	G	G	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	140794641	140794641	G	C	SNP	PCDHGA10	ENST00000398610	human	ensembl	74_37	+1	known	silent	c.1899	p.A633	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA10	HGNC	ENSG00000253846				72	0	0	24	13	35.1351
PCDHGA11	0	genome.wustl.edu	37	5	140801363	140801363	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	140801363	140801363	C	T	SNP	PCDHGA11	ENST00000398587	human	ensembl	74_37	+1	known	missense	c.569	p.A190V	0.031	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA11	HGNC	ENSG00000253873				47	0	0	18	12	40
PCDHGC3	0	genome.wustl.edu	37	5	140856231	140856231	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	140856231	140856231	G	A	SNP	PCDHGC3	ENST00000308177	human	ensembl	74_37	+1	known	missense	c.548	p.R183H	0.783	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGC3	HGNC	ENSG00000240184				35	0	0	26	13	33.3333
DIAPH1	0	genome.wustl.edu	37	5	140896555	140896555	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	140896555	140896555	C	T	SNP	DIAPH1	ENST00000253811	human	ensembl	74_37	-1	known	missense	c.3685	p.A1229T	1.000	NULL	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,pfam_Formin_homology_1,pfam_Drf_DAD,superfamily_ARM-type_fold,superfamily_tRNA-bd_arm,smart_FH2_Formin	-	no_errors	DIAPH1	HGNC	ENSG00000131504				48	0	0	30	7	18.9189
PCDH12	0	genome.wustl.edu	37	5	141336022	141336022	+	Silent	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	141336022	141336022	A	G	SNP	PCDH12	ENST00000231484	human	ensembl	74_37	-1	known	silent	c.1395	p.Y465	0.410	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH12	HGNC	ENSG00000113555				105	0	0	44	12	21.4286
GNPDA1	0	genome.wustl.edu	37	5	141384619	141384619	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	141384619	141384619	G	A	SNP	GNPDA1	ENST00000311337	human	ensembl	74_37	-1	known	missense	c.472	p.R158C	1.000	pfam_Glc/Gal-6P_isomerase,tigrfam_Glucosamine6P_isomerase	pfam_Glc/Gal-6P_isomerase,tigrfam_Glucosamine6P_isomerase	-	no_errors	GNPDA1	HGNC	ENSG00000113552				21	0	0	15	5	25
ADRB2	0	genome.wustl.edu	37	5	148207339	148207339	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	148207339	148207339	C	T	SNP	ADRB2	ENST00000305988	human	ensembl	74_37	+1	known	silent	c.945	p.G315	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_ADRB2_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam	-	no_errors	ADRB2	HGNC	ENSG00000169252				73	0	0	41	16	28.0702
AFAP1L1	0	genome.wustl.edu	37	5	148699169	148699169	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	148699169	148699169	C	T	SNP	AFAP1L1	ENST00000296721	human	ensembl	74_37	+1	known	missense	c.1504	p.R502C	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	AFAP1L1	HGNC	ENSG00000157510				39	0	0	24	11	31.4286
TIGD6	0	genome.wustl.edu	37	5	149375760	149375760	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	149375760	149375760	C	T	SNP	TIGD6	ENST00000296736	human	ensembl	74_37	-1	known	missense	c.152	p.R51H	0.000	pfam_HTH_Psq,superfamily_Homeodomain-like,pfscan_HTH_Psq	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,pfam_HTH_Psq,superfamily_Homeodomain-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_HTH_Psq	-	no_errors	TIGD6	HGNC	ENSG00000164296				65	0	0	30	11	26.8293
SYNPO	0	genome.wustl.edu	37	5	150029539	150029539	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	150029539	150029539	C	T	SNP	SYNPO	ENST00000394243	human	ensembl	74_37	+1	known	missense	c.2434	p.R812C	0.999	NULL	NULL	-	no_errors	SYNPO	HGNC	ENSG00000171992				73	0	0	32	22	40.7407
RBM22	0	genome.wustl.edu	37	5	150075217	150075217	+	Silent	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	150075217	150075217	T	C	SNP	RBM22	ENST00000199814	human	ensembl	74_37	-1	known	silent	c.597	p.K199	1.000	NULL	pfam_RRM_dom,superfamily_Znf_CCHC,smart_Znf_CCCH,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM22	HGNC	ENSG00000086589				64	0	0	34	15	30.6122
FAT2	0	genome.wustl.edu	37	5	150932868	150932868	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	150932868	150932868	C	T	SNP	FAT2	ENST00000261800	human	ensembl	74_37	-1	known	silent	c.4026	p.P1342	0.206	smart_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570				39	0	0	24	10	29.4118
DOCK2	0	genome.wustl.edu	37	5	169477279	169477279	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	169477279	169477279	G	A	SNP	DOCK2	ENST00000256935	human	ensembl	74_37	+1	known	missense	c.4091	p.R1364H	1.000	NULL	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_Cyt_c-like_dom,superfamily_ARM-type_fold,superfamily_Ferritin-like_SF,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK2	HGNC	ENSG00000134516				190	0	0	96	30	23.8095
HRH2	0	genome.wustl.edu	37	5	175110585	175110585	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	175110585	175110585	T	C	SNP	HRH2	ENST00000377291	human	ensembl	74_37	+1	known	missense	c.349	p.Y117H	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_5HT6_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Histamine_H2_rcpt,prints_GPCR_Rhodpsn,prints_5HT6_rcpt	-	no_errors	HRH2	HGNC	ENSG00000113749				62	0	0	34	11	24.4444
EIF4E1B	0	genome.wustl.edu	37	5	176072487	176072487	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	176072487	176072487	C	T	SNP	EIF4E1B	ENST00000318682	human	ensembl	74_37	+1	known	missense	c.584	p.A195V	0.823	pfam_TIF_eIF_4E,superfamily_TIF_eIF4e-like_dom	pfam_TIF_eIF_4E,superfamily_TIF_eIF4e-like_dom	-	no_errors	EIF4E1B	HGNC	ENSG00000175766				25	0	0	13	8	38.0952
HK3	0	genome.wustl.edu	37	5	176308391	176308391	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	176308391	176308391	C	T	SNP	HK3	ENST00000292432	human	ensembl	74_37	-1	known	missense	c.2539	p.V847M	1.000	pfam_Hexokinase_C,prints_Hexokinase	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	HK3	HGNC	ENSG00000160883				43	0	0	22	8	26.6667
ZFP2	0	genome.wustl.edu	37	5	178359697	178359697	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	178359697	178359697	G	A	SNP	ZFP2	ENST00000361362	human	ensembl	74_37	+1	known	silent	c.1383	p.T461	0.069	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP2	HGNC	ENSG00000198939				53	0	0	29	11	27.5
MGAT4B	0	genome.wustl.edu	37	5	179227025	179227025	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	179227025	179227025	A	G	SNP	MGAT4B	ENST00000337755	human	ensembl	74_37	-1	known	missense	c.884	p.M295T	1.000	pfam_Glyco_transf_54	pfam_Glyco_transf_54	-	no_errors	MGAT4B	HGNC	ENSG00000161013				77	0	0	45	15	25
TRIM7	0	genome.wustl.edu	37	5	180622608	180622608	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	180622608	180622608	C	T	SNP	TRIM7	ENST00000274773	human	ensembl	74_37	-1	known	missense	c.1094	p.R365H	0.985	superfamily_ConA-like_lec_gl_sf,smart_PRY,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin,prints_Znf_B-box_chordata	-	no_errors	TRIM7	HGNC	ENSG00000146054				26	0	0	13	6	31.5789
CDH18	0	genome.wustl.edu	37	5	19473667	19473667	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	19473667	19473667	C	T	SNP	CDH18	ENST00000274170	human	ensembl	74_37	-1	known	missense	c.2041	p.A681T	0.995	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH18	HGNC	ENSG00000145526				121	0	0	78	13	14.2857
CDH12	0	genome.wustl.edu	37	5	21842333	21842333	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	21842333	21842333	C	T	SNP	CDH12	ENST00000382254	human	ensembl	74_37	-1	known	missense	c.751	p.G251R	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH12	HGNC	ENSG00000154162				91	0	0	52	18	25.7143
GOLPH3	0	genome.wustl.edu	37	5	32126538	32126538	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	32126538	32126538	A	C	SNP	GOLPH3	ENST00000265070	human	ensembl	74_37	-1	known	missense	c.677	p.V226G	1.000	pfam_GPP34	pfam_GPP34	-	no_errors	GOLPH3	HGNC	ENSG00000113384				74	0	0	56	20	26.3158
SUB1	0	genome.wustl.edu	37	5	32599082	32599082	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	32599082	32599082	T	C	SNP	SUB1	ENST00000265073	human	ensembl	74_37	+1	known	missense	c.211	p.Y71H	1.000	pfam_PC4,superfamily_ssDNA-bd_transcriptional_reg	pfam_PC4,superfamily_ssDNA-bd_transcriptional_reg	-	no_errors	SUB1	HGNC	ENSG00000113387				61	0	0	27	13	32.5
AMACR	0	genome.wustl.edu	37	5	34004719	34004719	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	34004719	34004719	C	T	SNP	AMACR	ENST00000335606	human	ensembl	74_37	-1	known	missense	c.512	p.R171H	1.000	pfam_CoA-Trfase_fam_III,superfamily_CoA-Trfase_III_dom	pfam_CoA-Trfase_fam_III,superfamily_CoA-Trfase_III_dom	-	no_errors	AMACR	HGNC	ENSG00000242110				143	0	0	75	18	19.3548
DNAJC21	0	genome.wustl.edu	37	5	34954762	34954762	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	34954762	34954762	G	A	SNP	DNAJC21	ENST00000382021	human	ensembl	74_37	+1	known	silent	c.1674	p.S558	0.051	NULL	pfam_DnaJ_domain,pfam_Znf_C2H2_jaz,superfamily_DnaJ_domain,smart_DnaJ_domain,smart_Znf_U1,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJC21	HGNC	ENSG00000168724				96	0	0	55	15	21.4286
EGFLAM	0	genome.wustl.edu	37	5	38370555	38370555	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	38370555	38370555	C	T	SNP	EGFLAM	ENST00000354891	human	ensembl	74_37	+1	known	missense	c.703	p.R235W	0.983	pfscan_Fibronectin_type3	pfam_Laminin_G,pfam_Fibronectin_type3,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Laminin_G	-	no_errors	EGFLAM	HGNC	ENSG00000164318				22	0	0	17	5	22.7273
AHRR	0	genome.wustl.edu	37	5	434067	434067	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	434067	434067	G	A	SNP	AHRR	ENST00000316418	human	ensembl	74_37	+1	known	silent	c.1278	p.A426	0.001	NULL	pfam_PAS_fold,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	AHRR	HGNC	ENSG00000063438				17	0	0	12	4	25
ADAMTS16	0	genome.wustl.edu	37	5	5209338	5209338	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	5209338	5209338	C	T	SNP	ADAMTS16	ENST00000274181	human	ensembl	74_37	+1	known	silent	c.1584	p.L528	0.708	NULL	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS16	HGNC	ENSG00000145536				95	0	0	32	26	44.8276
DIMT1	0	genome.wustl.edu	37	5	61686760	61686760	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	61686760	61686760	G	A	SNP	DIMT1	ENST00000199320	human	ensembl	74_37	-1	known	missense	c.842	p.T281I	1.000	tigrfam_rRNA_adenine_dimethylase	pfam_rRNA_Ade_methylase_transferase,smart_rRNA_Ade_methylase_Trfase_N,tigrfam_rRNA_adenine_dimethylase	-	no_errors	DIMT1	HGNC	ENSG00000086189				150	0	0	85	28	24.7788
ADAMTS6	0	genome.wustl.edu	37	5	64756033	64756033	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	64756033	64756033	G	A	SNP	ADAMTS6	ENST00000381055	human	ensembl	74_37	-1	known	nonsense	c.595	p.R199*	0.982	NULL	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS6	HGNC	ENSG00000049192				118	1	0.840336	54	19	26.0274
MAST4	0	genome.wustl.edu	37	5	66430464	66430464	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	66430464	66430464	C	T	SNP	MAST4	ENST00000404260	human	ensembl	74_37	+1	known	silent	c.2349	p.C783	0.884	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_dom	-	no_errors	MAST4	HGNC	ENSG00000069020				159	0	0	74	18	19.5652
NAIP	0	genome.wustl.edu	37	5	70308328	70308328	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	70308328	70308328	C	T	SNP	NAIP	ENST00000194097	human	ensembl	74_37	-1	known	missense	c.415	p.D139N	0.935	NULL	pfam_BIR,superfamily_P-loop_NTPase,smart_BIR,smart_AAA+_ATPase,pfscan_NACHT_NTPase,pfscan_BIR	-	no_errors	NAIP	HGNC	ENSG00000249437				104	0	0	50	14	21.875
ENC1	0	genome.wustl.edu	37	5	73931957	73931957	+	Silent	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	73931957	73931957	T	C	SNP	ENC1	ENST00000302351	human	ensembl	74_37	-1	known	silent	c.354	p.E118	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	ENC1	HGNC	ENSG00000171617				94	0	0	36	12	25
SV2C	0	genome.wustl.edu	37	5	75505643	75505643	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	75505643	75505643	C	T	SNP	SV2C	ENST00000502798	human	ensembl	74_37	+1	known	missense	c.844	p.L282F	1.000	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2	-	no_errors	SV2C	HGNC	ENSG00000122012				40	0	0	32	6	15.7895
DMGDH	0	genome.wustl.edu	37	5	78328598	78328598	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	78328598	78328598	T	C	SNP	DMGDH	ENST00000255189	human	ensembl	74_37	-1	known	missense	c.1429	p.R477G	0.001	NULL	pfam_FAD-dep_OxRdtase,pfam_GCV_T_N,pfam_GCV_T_C,pfam_SoxG	-	no_errors	DMGDH	HGNC	ENSG00000132837				179	0	0	106	37	25.8741
MTRR	0	genome.wustl.edu	37	5	7875484	7875484	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	7875484	7875484	G	A	SNP	MTRR	ENST00000264668	human	ensembl	74_37	+1	known	missense	c.478	p.V160I	0.988	pfam_Flavodoxin/NO_synth,pfscan_Flavodoxin/NO_synth	pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_Riboflavin_synthase-like_b-brl,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	MTRR	HGNC	ENSG00000124275				161	0	0	67	33	33
ZCCHC9	0	genome.wustl.edu	37	5	80608564	80608564	+	RNA	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	80608564	80608564	C	T	SNP	ZCCHC9	ENST00000506458	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZCCHC9	HGNC	ENSG00000131732				36	0	0	11	3	21.4286
SEMA5A	0	genome.wustl.edu	37	5	9202323	9202323	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	9202323	9202323	C	T	SNP	SEMA5A	ENST00000382496	human	ensembl	74_37	-1	known	missense	c.676	p.G226R	1.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Thrombospondin_1_rpt,superfamily_Semap_dom,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Thrombospondin_1_rpt,pfscan_Semap_dom,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5A	HGNC	ENSG00000112902				53	0	0	29	12	29.2683
RHOBTB3	0	genome.wustl.edu	37	5	95099279	95099279	+	Silent	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	95099279	95099279	A	G	SNP	RHOBTB3	ENST00000379982	human	ensembl	74_37	+1	known	silent	c.1116	p.S372	0.909	smart_BTB/POZ-like	pfam_BTB_POZ,pfam_Small_GTPase,superfamily_BTB/POZ_fold,superfamily_P-loop_NTPase,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	RHOBTB3	HGNC	ENSG00000164292				86	0	0	38	14	26.9231
SIM1	0	genome.wustl.edu	37	6	100896434	100896434	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	100896434	100896434	C	T	SNP	SIM1	ENST00000262901	human	ensembl	74_37	-1	known	missense	c.664	p.V222I	1.000	smart_PAS	pfam_SIM_C,pfam_PAS_fold_3,pfam_PAS_fold,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	SIM1	HGNC	ENSG00000112246				26	0	0	30	8	21.0526
BEND3	0	genome.wustl.edu	37	6	107391922	107391922	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	107391922	107391922	T	G	SNP	BEND3	ENST00000369042	human	ensembl	74_37	-1	known	missense	c.473	p.K158T	0.993	NULL	pfam_BEN_domain	-	no_errors	BEND3	HGNC	ENSG00000178409				61	0	0	74	20	21.2766
GCM2	0	genome.wustl.edu	37	6	10874821	10874821	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	10874821	10874821	G	A	SNP	GCM2	ENST00000379491	human	ensembl	74_37	-1	known	silent	c.928	p.L310	0.000	NULL	pfam_Tscrpt_reg_GCM_motif,superfamily_Tscrpt_reg_GCM_motif,pfscan_Tscrpt_reg_GCM_motif	-	no_errors	GCM2	HGNC	ENSG00000124827				168	0	0	116	30	20.5479
FOXO3	0	genome.wustl.edu	37	6	108984784	108984784	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	108984784	108984784	C	T	SNP	FOXO3	ENST00000343882	human	ensembl	74_37	+1	known	missense	c.748	p.R250W	0.998	pfscan_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXO3	HGNC	ENSG00000118689				16	0	0	7	5	41.6667
RPF2	0	genome.wustl.edu	37	6	111320954	111320954	+	Silent	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	111320954	111320954	A	G	SNP	RPF2	ENST00000441448	human	ensembl	74_37	+1	known	silent	c.357	p.L119	1.000	pfam_Brix,superfamily_Anticodon-bd,smart_Brix,pfscan_Brix	pfam_Brix,superfamily_Anticodon-bd,smart_Brix,pfscan_Brix	-	no_errors	RPF2	HGNC	ENSG00000197498				61	0	0	45	15	25
REV3L	0	genome.wustl.edu	37	6	111654524	111654524	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	111654524	111654524	T	A	SNP	REV3L	ENST00000358835	human	ensembl	74_37	-1	known	missense	c.7727	p.Y2576F	1.000	pfam_DNA-dir_DNA_pol_B_multi_dom,smart_DNA-dir_DNA_pol_B	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B	-	no_errors	REV3L	HGNC	ENSG00000009413				61	0	0	31	15	32.6087
REV3L	0	genome.wustl.edu	37	6	111695100	111695100	+	Silent	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	111695100	111695100	A	G	SNP	REV3L	ENST00000358835	human	ensembl	74_37	-1	known	silent	c.4458	p.F1486	1.000	superfamily_RNaseH-like_dom	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B	-	no_errors	REV3L	HGNC	ENSG00000009413				130	0	0	93	5	5.10204
TRAF3IP2	0	genome.wustl.edu	37	6	111912543	111912543	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	111912543	111912543	C	T	SNP	TRAF3IP2	ENST00000340026	human	ensembl	74_37	-1	known	silent	c.774	p.Q258	0.994	NULL	pfam_SEFIR	-	no_errors	TRAF3IP2	HGNC	ENSG00000056972				39	0	0	32	10	23.8095
KPNA5	0	genome.wustl.edu	37	6	117037453	117037453	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	117037453	117037453	G	A	SNP	KPNA5	ENST00000356348	human	ensembl	74_37	+1	known	missense	c.728	p.G243D	1.000	superfamily_ARM-type_fold	pfam_Armadillo,pfam_Importin-a_IBB,pfam_HEAT,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,pfscan_Importin-a_IBB	-	no_errors	KPNA5	HGNC	ENSG00000196911				68	0	0	40	8	16.6667
ROS1	0	genome.wustl.edu	37	6	117650526	117650526	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	117650526	117650526	C	A	SNP	ROS1	ENST00000368508	human	ensembl	74_37	-1	known	nonsense	c.5332	p.G1778*	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_LDLR_classB_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ROS1	HGNC	ENSG00000047936				89	0	0	64	11	14.6667
ADTRP	0	genome.wustl.edu	37	6	11778881	11778881	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	11778881	11778881	C	T	SNP	ADTRP	ENST00000379413	human	ensembl	74_37	-1	known	missense	c.112	p.A38T	0.000	pfam_Far-17a_AIG1	pfam_Far-17a_AIG1	-	no_errors	ADTRP	HGNC	ENSG00000111863				151	0	0	90	24	21.0526
DCBLD1	0	genome.wustl.edu	37	6	117864339	117864339	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	117864339	117864339	G	A	SNP	DCBLD1	ENST00000338728	human	ensembl	74_37	+1	known	silent	c.1410	p.V470	0.000	NULL	pfam_Coagulation_fac_5/8-C_type_dom,pfam_LCCL,pfam_CUB_dom,superfamily_Galactose-bd-like,superfamily_LCCL,superfamily_CUB_dom,smart_CUB_dom,smart_LCCL,smart_Coagulation_fac_5/8-C_type_dom,pfscan_CUB_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_LCCL	-	no_errors	DCBLD1	HGNC	ENSG00000164465				126	0	0	90	27	23.0769
FAM184A	0	genome.wustl.edu	37	6	119281303	119281303	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	119281303	119281303	G	A	SNP	FAM184A	ENST00000338891	human	ensembl	74_37	-1	known	missense	c.3388	p.R1130C	1.000	NULL	superfamily_Prefoldin	-	no_errors	FAM184A	HGNC	ENSG00000111879				40	0	0	21	5	19.2308
HIVEP1	0	genome.wustl.edu	37	6	12124535	12124535	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	12124535	12124535	G	A	SNP	HIVEP1	ENST00000379388	human	ensembl	74_37	+1	known	missense	c.4507	p.V1503I	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP1	HGNC	ENSG00000095951				70	0	0	46	22	32.3529
EDN1	0	genome.wustl.edu	37	6	12296244	12296244	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	12296244	12296244	C	T	SNP	EDN1	ENST00000379375	human	ensembl	74_37	+1	known	silent	c.583	p.L195	0.998	NULL	pfam_Endothln-like_toxin,smart_Endothln-like_toxin,prints_Bibrotoxin/Sarafotoxin-D	-	no_errors	EDN1	HGNC	ENSG00000078401				179	0	0	126	31	19.7452
CLVS2	0	genome.wustl.edu	37	6	123318992	123318992	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	123318992	123318992	C	A	SNP	CLVS2	ENST00000275162	human	ensembl	74_37	+1	known	missense	c.70	p.P24T	1.000	superfamily_CRAL/TRIO_N_dom	pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,prints_CRAL-bd_toc_tran	-	no_errors	CLVS2	HGNC	ENSG00000146352				81	0	0	42	13	23.6364
PTPRK	0	genome.wustl.edu	37	6	128388769	128388769	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	128388769	128388769	C	T	SNP	PTPRK	ENST00000368227	human	ensembl	74_37	-1	known	silent	c.2052	p.P684	0.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRK	HGNC	ENSG00000152894				75	0	0	46	13	22.0339
PTPRK	0	genome.wustl.edu	37	6	128561240	128561240	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	128561240	128561240	G	A	SNP	PTPRK	ENST00000368227	human	ensembl	74_37	-1	known	silent	c.633	p.N211	0.998	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRK	HGNC	ENSG00000152894				68	0	0	44	13	22.807
LAMA2	0	genome.wustl.edu	37	6	129775324	129775324	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	129775324	129775324	C	T	SNP	LAMA2	ENST00000421865	human	ensembl	74_37	+1	known	missense	c.6598	p.R2200C	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_B_type_IV,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA2	HGNC	ENSG00000196569				67	0	0	48	13	21.3115
EPB41L2	0	genome.wustl.edu	37	6	131191139	131191139	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	131191139	131191139	C	T	SNP	EPB41L2	ENST00000337057	human	ensembl	74_37	-1	known	missense	c.2171	p.R724H	0.048	pirsf_Band_41_protein	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB_dom,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like,pfscan_FERM_domain	-	no_errors	EPB41L2	HGNC	ENSG00000079819				65	0	0	26	23	46.9388
CTGF	0	genome.wustl.edu	37	6	132270619	132270619	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	132270619	132270619	A	G	SNP	CTGF	ENST00000367976	human	ensembl	74_37	-1	known	missense	c.835	p.Y279H	0.999	pfam_Cys_knot,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C	pfam_Cys_knot,pfam_IGFBP-like,pfam_VWF_C,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	CTGF	HGNC	ENSG00000118523				276	0	0	248	52	17.3333
MAP3K5	0	genome.wustl.edu	37	6	137018441	137018441	+	Silent	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	137018441	137018441	T	C	SNP	MAP3K5	ENST00000359015	human	ensembl	74_37	-1	known	silent	c.891	p.A297	0.997	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP3K5	HGNC	ENSG00000197442				68	0	0	41	22	34.9206
HIVEP2	0	genome.wustl.edu	37	6	143093783	143093783	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	143093783	143093783	C	T	SNP	HIVEP2	ENST00000012134	human	ensembl	74_37	-1	known	missense	c.2093	p.R698Q	1.000	NULL	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP2	HGNC	ENSG00000010818				156	0	0	85	28	24.7788
UTRN	0	genome.wustl.edu	37	6	144724272	144724272	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	144724272	144724272	C	T	SNP	UTRN	ENST00000367545	human	ensembl	74_37	+1	known	silent	c.93	p.D31	0.290	superfamily_CH-domain,pirsf_Dystrophin/utrophin,pfscan_CH-domain	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	UTRN	HGNC	ENSG00000152818				25	0	0	24	5	17.2414
UST	0	genome.wustl.edu	37	6	149342520	149342520	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	149342520	149342520	C	T	SNP	UST	ENST00000367463	human	ensembl	74_37	+1	known	silent	c.840	p.L280	0.985	pfam_Sulfotransferase,pfam_Gal-3-0_sulfotransfrase	pfam_Sulfotransferase,pfam_Gal-3-0_sulfotransfrase,superfamily_P-loop_NTPase	-	no_errors	UST	HGNC	ENSG00000111962				38	0	0	36	8	18.1818
RAET1E	0	genome.wustl.edu	37	6	150210620	150210620	+	Silent	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	150210620	150210620	A	G	SNP	RAET1E	ENST00000357183	human	ensembl	74_37	-1	known	silent	c.486	p.H162	0.000	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	-	no_errors	RAET1E	HGNC	ENSG00000164520				109	0	0	82	24	22.6415
ESR1	0	genome.wustl.edu	37	6	152129084	152129084	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	152129084	152129084	G	A	SNP	ESR1	ENST00000206249	human	ensembl	74_37	+1	known	missense	c.37	p.A13T	0.991	prints_Oestr_rcpt	pfam_Oestr_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Oestr_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	ESR1	HGNC	ENSG00000091831				30	0	0	26	4	13.3333
ESR1	0	genome.wustl.edu	37	6	152382191	152382191	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	152382191	152382191	G	A	SNP	ESR1	ENST00000206249	human	ensembl	74_37	+1	known	missense	c.1301	p.R434Q	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core	pfam_Oestr_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Oestr_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	ESR1	HGNC	ENSG00000091831				35	0	0	26	3	10.3448
SYNE1	0	genome.wustl.edu	37	6	152711422	152711422	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	152711422	152711422	C	T	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	missense	c.8170	p.A2724T	0.995	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				45	0	0	39	14	26.4151
IPCEF1	0	genome.wustl.edu	37	6	154489165	154489165	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	154489165	154489165	G	A	SNP	IPCEF1	ENST00000367220	human	ensembl	74_37	-1	known	nonsense	c.994	p.R332*	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	IPCEF1	HGNC	ENSG00000074706				280	0	0	172	34	16.5049
JARID2	0	genome.wustl.edu	37	6	15501269	15501269	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	15501269	15501269	C	T	SNP	JARID2	ENST00000341776	human	ensembl	74_37	+1	known	missense	c.2077	p.R693W	1.000	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_TF_JmjN,pfam_Znf_C5HC2,superfamily_ARID/BRIGHT_DNA-bd,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	JARID2	HGNC	ENSG00000008083				48	0	0	38	8	17.3913
JARID2	0	genome.wustl.edu	37	6	15507634	15507634	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	15507634	15507634	C	T	SNP	JARID2	ENST00000341776	human	ensembl	74_37	+1	known	silent	c.2718	p.L906	1.000	smart_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_TF_JmjN,pfam_Znf_C5HC2,superfamily_ARID/BRIGHT_DNA-bd,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	JARID2	HGNC	ENSG00000008083				59	0	0	46	9	16.3636
JARID2	0	genome.wustl.edu	37	6	15520429	15520429	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	15520429	15520429	C	T	SNP	JARID2	ENST00000341776	human	ensembl	74_37	+1	known	missense	c.3688	p.P1230S	0.997	NULL	pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_TF_JmjN,pfam_Znf_C5HC2,superfamily_ARID/BRIGHT_DNA-bd,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	JARID2	HGNC	ENSG00000008083				63	0	0	51	10	16.3934
NOX3	0	genome.wustl.edu	37	6	155761270	155761270	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	155761270	155761270	T	C	SNP	NOX3	ENST00000159060	human	ensembl	74_37	-1	known	missense	c.488	p.N163S	0.659	pfam_Fe3_Rdtase_TM_dom	pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl,prints_Cyt_b245_heavy_chain	-	no_errors	NOX3	HGNC	ENSG00000074771				44	0	0	28	5	15.1515
TULP4	0	genome.wustl.edu	37	6	158923878	158923878	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	158923878	158923878	G	A	SNP	TULP4	ENST00000367097	human	ensembl	74_37	+1	known	silent	c.3183	p.P1061	0.033	NULL	pfam_Tubby_C,pfam_SOCS_C,pfam_WD40_repeat,superfamily_Tubby_C-like,superfamily_WD40_repeat_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_WD40_repeat,smart_SOCS_C,pfscan_SOCS_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TULP4	HGNC	ENSG00000130338				25	0	0	22	5	18.5185
PARK2	0	genome.wustl.edu	37	6	162683713	162683713	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	162683713	162683713	C	T	SNP	PARK2	ENST00000366898	human	ensembl	74_37	-1	known	missense	c.256	p.D86N	0.000	pirsf_Parkin	pfam_Ubiquitin_dom,pfam_Znf_C6HC,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,smart_Znf_C6HC,pirsf_Parkin,pfscan_Ubiquitin_supergroup,prints_Parkin,prints_Ubiquitin	-	no_errors	PARK2	HGNC	ENSG00000185345				64	0	0	26	8	23.5294
T	0	genome.wustl.edu	37	6	166580961	166580961	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	166580961	166580961	C	T	SNP	T	ENST00000296946	human	ensembl	74_37	-1	known	missense	c.119	p.R40H	1.000	prints_TF_Brachyury	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_Brachyury,prints_TF_T-box,pfscan_TF_T-box	-	no_errors	T	HGNC	ENSG00000164458				25	0	0	16	7	30.4348
TTLL2	0	genome.wustl.edu	37	6	167754476	167754476	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	167754476	167754476	C	T	SNP	TTLL2	ENST00000239587	human	ensembl	74_37	+1	known	missense	c.1088	p.A363V	0.001	pfam_TTL/TTLL_fam	pfam_TTL/TTLL_fam	-	no_errors	TTLL2	HGNC	ENSG00000120440				209	0	0	128	35	21.4724
MLLT4	0	genome.wustl.edu	37	6	168319469	168319469	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	168319469	168319469	C	T	SNP	MLLT4	ENST00000366806	human	ensembl	74_37	+1	known	missense	c.2743	p.R915C	0.996	NULL	pfam_Ras-assoc,pfam_Dil_domain,pfam_PDZ,pfam_FHA_dom,superfamily_PDZ,superfamily_SMAD_FHA_domain,smart_Ras-assoc,smart_FHA_dom,smart_PDZ,pfscan_Dilute,pfscan_PDZ,pfscan_Ras-assoc	-	no_errors	MLLT4	HGNC	ENSG00000130396				36	0	0	23	5	17.8571
THBS2	0	genome.wustl.edu	37	6	169648977	169648977	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	169648977	169648977	G	A	SNP	THBS2	ENST00000366787	human	ensembl	74_37	-1	known	silent	c.144	p.P48	0.004	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_Thrombospondin_C,pfam_Thrombospondin_1_rpt,pfam_VWF_C,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Thrombospondin_1_rpt,smart_Laminin_G,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	THBS2	HGNC	ENSG00000186340				49	0	0	36	9	20
NUP153	0	genome.wustl.edu	37	6	17629339	17629339	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	17629339	17629339	A	C	SNP	NUP153	ENST00000537253	human	ensembl	74_37	-1	known	missense	c.3184	p.S1062A	0.000	NULL	pfam_Nucleoporin_Nup153,pfam_Znf_RanBP2,pfam_Retro-transposon_transp_CS,smart_Znf_RanBP2,pfscan_Znf_RanBP2	-	no_errors	NUP153	HGNC	ENSG00000124789				73	0	0	39	12	23.5294
LRRC16A	0	genome.wustl.edu	37	6	25472729	25472729	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	25472729	25472729	G	A	SNP	LRRC16A	ENST00000377969	human	ensembl	74_37	+1	known	missense	c.371	p.G124D	1.000	NULL	NULL	-	no_errors	LRRC16A	HGNC	ENSG00000079691				14	0	0	15	2	11.7647
HIST1H4F	0	genome.wustl.edu	37	6	26240942	26240942	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	26240942	26240942	A	G	SNP	HIST1H4F	ENST00000377745	human	ensembl	74_37	+1	known	missense	c.289	p.T97A	1.000	superfamily_Histone-fold,prints_Histone_H4	pfam_Histone_core_D,pfam_TAF_TATA-bd,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	-	no_errors	HIST1H4F	HGNC	ENSG00000198327				74	0	0	44	14	24.1379
BTN2A2	0	genome.wustl.edu	37	6	26384103	26384103	+	Silent	SNP	C	C	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	26384103	26384103	C	G	SNP	BTN2A2	ENST00000356709	human	ensembl	74_37	+1	known	silent	c.54	p.L18	0.015	NULL	pfam_SPRY_rcpt,pfam_Ig_V-set,pfam_CD80_C2-set,superfamily_ConA-like_lec_gl_sf,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Ig-like_dom	-	no_errors	BTN2A2	HGNC	ENSG00000124508				94	0	0	54	11	16.9231
BTN2A3P	0	genome.wustl.edu	37	6	26423300	26423300	+	RNA	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	26423300	26423300	A	G	SNP	BTN2A3P	ENST00000465856	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.023	-	-	-	no_errors	BTN2A3P	HGNC	ENSG00000124549				93	0	0	43	9	17.3077
BTN2A3P	0	genome.wustl.edu	37	6	26423392	26423392	+	RNA	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	26423392	26423392	G	A	SNP	BTN2A3P	ENST00000465856	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.563	-	-	-	no_errors	BTN2A3P	HGNC	ENSG00000124549				85	0	0	54	12	18.1818
BTN2A3P	0	genome.wustl.edu	37	6	26423427	26423427	+	RNA	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	26423427	26423427	G	A	SNP	BTN2A3P	ENST00000465856	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	BTN2A3P	HGNC	ENSG00000124549				74	0	0	45	15	25
BTN3A3	0	genome.wustl.edu	37	6	26452045	26452045	+	Silent	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	26452045	26452045	T	C	SNP	BTN3A3	ENST00000244519	human	ensembl	74_37	+1	known	silent	c.1161	p.C387	0.000	superfamily_ConA-like_lec_gl_sf,smart_PRY,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Ig_V-set,superfamily_ConA-like_lec_gl_sf,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Ig-like_dom,prints_Butyrophylin	-	no_errors	BTN3A3	HGNC	ENSG00000111801				38	0	0	50	13	20.6349
SERPINB6	0	genome.wustl.edu	37	6	2948549	2948549	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	2948549	2948549	G	A	SNP	SERPINB6	ENST00000335686	human	ensembl	74_37	-1	known	missense	c.1114	p.R372C	0.998	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINB6	HGNC	ENSG00000124570				36	0	0	31	4	11.4286
HLA-G	0	genome.wustl.edu	37	6	29797196	29797196	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	29797196	29797196	C	T	SNP	HLA-G	ENST00000376828	human	ensembl	74_37	+1	known	silent	c.636	p.D212	0.004	NULL	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom,prints_MHC_I_a	-	no_errors	HLA-G	HGNC	ENSG00000204632				116	0	0	92	25	21.3675
TRIM26	0	genome.wustl.edu	37	6	30154088	30154088	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	30154088	30154088	C	T	SNP	TRIM26	ENST00000437089	human	ensembl	74_37	-1	known	silent	c.1185	p.E395	0.504	superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM26	HGNC	ENSG00000234127				38	0	0	19	7	26.9231
PPP1R10	0	genome.wustl.edu	37	6	30574361	30574361	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	30574361	30574361	C	T	SNP	PPP1R10	ENST00000376511	human	ensembl	74_37	-1	known	missense	c.518	p.R173Q	0.994	NULL	pfam_TFIIS_N,pfam_Znf_CCCH,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,smart_Znf_CCCH	-	no_errors	PPP1R10	HGNC	ENSG00000204569				78	0	0	65	19	22.619
DHX16	0	genome.wustl.edu	37	6	30632714	30632714	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	30632714	30632714	G	A	SNP	DHX16	ENST00000376442	human	ensembl	74_37	-1	known	missense	c.1181	p.A394V	0.924	superfamily_P-loop_NTPase	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX16	HGNC	ENSG00000204560				26	0	0	25	12	32.4324
MDC1	0	genome.wustl.edu	37	6	30672220	30672220	+	Silent	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	30672220	30672220	A	G	SNP	MDC1	ENST00000376406	human	ensembl	74_37	-1	known	silent	c.4740	p.P1580	0.020	NULL	pfam_FHA_dom,superfamily_BRCT_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_BRCT_dom,pfscan_FHA_dom	-	no_errors	MDC1	HGNC	ENSG00000137337				166	0	0	146	34	18.8889
SKIV2L	0	genome.wustl.edu	37	6	31931826	31931826	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	31931826	31931826	C	T	SNP	SKIV2L	ENST00000375394	human	ensembl	74_37	+1	known	missense	c.1784	p.S595L	0.562	superfamily_P-loop_NTPase,pirsf_RNA_helicase_ATP-dep_SK12/DOB1,pfscan_Helicase_C	pfam_DSH_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pirsf_RNA_helicase_ATP-dep_SK12/DOB1,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SKIV2L	HGNC	ENSG00000204351				54	0	0	36	31	46.2687
SYNGAP1	0	genome.wustl.edu	37	6	33411085	33411085	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	33411085	33411085	A	G	SNP	SYNGAP1	ENST00000418600	human	ensembl	74_37	+1	known	missense	c.2756	p.Q919R	1.000	pfam_DUF3498	pfam_DUF3498,pfam_RasGAP,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	SYNGAP1	HGNC	ENSG00000197283				148	0	0	125	29	18.8312
ZBTB9	0	genome.wustl.edu	37	6	33423698	33423698	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	33423698	33423698	C	T	SNP	ZBTB9	ENST00000395064	human	ensembl	74_37	+1	known	missense	c.821	p.A274V	0.424	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB9	HGNC	ENSG00000213588				79	0	0	46	15	24.5902
GRM4	0	genome.wustl.edu	37	6	34008491	34008491	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	34008491	34008491	C	T	SNP	GRM4	ENST00000374181	human	ensembl	74_37	-1	known	silent	c.1203	p.E401	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_GPCR_3_mtglu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_4,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GRM4	HGNC	ENSG00000124493				46	0	0	51	11	17.7419
GRM4	0	genome.wustl.edu	37	6	34059806	34059806	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	34059806	34059806	C	T	SNP	GRM4	ENST00000374181	human	ensembl	74_37	-1	known	missense	c.590	p.R197H	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_GPCR_3,prints_GPCR_3_GABA_rcpt_B	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_4,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GRM4	HGNC	ENSG00000124493				32	0	0	33	7	17.5
ANKS1A	0	genome.wustl.edu	37	6	34937854	34937854	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	34937854	34937854	C	A	SNP	ANKS1A	ENST00000360359	human	ensembl	74_37	+1	known	missense	c.346	p.P116T	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_PTB/PI_dom,pfam_SAM_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,smart_PTB/PI_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PTB/PI_dom,pfscan_SAM,prints_Ankyrin_rpt	-	no_errors	ANKS1A	HGNC	ENSG00000064999				82	0	0	82	18	18
ZNF76	0	genome.wustl.edu	37	6	35260699	35260699	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	35260699	35260699	C	T	SNP	ZNF76	ENST00000373953	human	ensembl	74_37	+1	known	missense	c.1207	p.R403W	0.001	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF76	HGNC	ENSG00000065029				80	0	0	69	23	25
TULP1	0	genome.wustl.edu	37	6	35478786	35478786	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	35478786	35478786	C	A	SNP	TULP1	ENST00000229771	human	ensembl	74_37	-1	known	missense	c.351	p.E117D	0.622	NULL	pfam_Tubby_C,superfamily_Tubby_C-like,prints_Tubby_C	-	no_errors	TULP1	HGNC	ENSG00000112041				64	0	0	60	18	23.0769
PI16	0	genome.wustl.edu	37	6	36930862	36930862	+	Silent	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	36930862	36930862	C	A	SNP	PI16	ENST00000373674	human	ensembl	74_37	+1	known	silent	c.744	p.V248	0.172	NULL	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1	-	no_errors	PI16	HGNC	ENSG00000164530				89	0	0	58	22	27.5
CMTR1	0	genome.wustl.edu	37	6	37430630	37430630	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	37430630	37430630	G	A	SNP	CMTR1	ENST00000373451	human	ensembl	74_37	+1	known	missense	c.1351	p.V451M	0.995	NULL	pfam_rRNA_MeTrfase_FtsJ_dom,pfam_G_patch_dom,smart_G_patch_dom,smart_WW_dom,pfscan_G_patch_dom	-	no_errors	CMTR1	HGNC	ENSG00000137200				86	0	0	66	6	8.33333
BTBD9	0	genome.wustl.edu	37	6	38560444	38560444	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	38560444	38560444	G	A	SNP	BTBD9	ENST00000403056	human	ensembl	74_37	-1	known	missense	c.722	p.P241L	1.000	NULL	pfam_BTB_POZ,pfam_BACK,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_BTB/POZ_fold,superfamily_Galactose-bd-like,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD9	HGNC	ENSG00000183826				75	0	0	31	11	26.1905
DNAH8	0	genome.wustl.edu	37	6	38863896	38863896	+	Silent	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	38863896	38863896	T	C	SNP	DNAH8	ENST00000359357	human	ensembl	74_37	+1	known	silent	c.8184	p.C2728	0.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721				85	0	0	55	15	21.4286
DNAH8	0	genome.wustl.edu	37	6	38905788	38905788	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	38905788	38905788	C	T	SNP	DNAH8	ENST00000359357	human	ensembl	74_37	+1	known	nonsense	c.10951	p.R3651*	0.018	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721				83	0	0	54	7	11.4754
LRFN2	0	genome.wustl.edu	37	6	40399588	40399588	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	40399588	40399588	G	A	SNP	LRFN2	ENST00000338305	human	ensembl	74_37	-1	known	missense	c.1265	p.P422L	0.995	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRFN2	HGNC	ENSG00000156564				39	0	0	19	20	51.2821
CNPY3	0	genome.wustl.edu	37	6	42903362	42903362	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	42903362	42903362	A	C	SNP	CNPY3	ENST00000372836	human	ensembl	74_37	+1	known	missense	c.326	p.D109A	1.000	pfam_DUF3456	pfam_DUF3456	-	no_errors	CNPY3	HGNC	ENSG00000137161				66	0	0	29	11	27.5
PEX6	0	genome.wustl.edu	37	6	42936059	42936059	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	42936059	42936059	G	A	SNP	PEX6	ENST00000304611	human	ensembl	74_37	-1	known	missense	c.1657	p.H553Y	0.652	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	PEX6	HGNC	ENSG00000124587				29	0	0	16	17	51.5152
MRPL2	0	genome.wustl.edu	37	6	43023827	43023827	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	43023827	43023827	C	T	SNP	MRPL2	ENST00000388752	human	ensembl	74_37	-1	known	missense	c.512	p.R171Q	0.989	superfamily_NA-bd_OB-fold	pfam_Ribosomal_L2_C,pfam_Rbsml_prot_L2_RNA-bd_dom,superfamily_Translation_prot_SH3-like,superfamily_NA-bd_OB-fold	-	no_errors	MRPL2	HGNC	ENSG00000112651				55	0	0	32	12	27.2727
TMEM63B	0	genome.wustl.edu	37	6	44120388	44120388	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	44120388	44120388	C	T	SNP	TMEM63B	ENST00000259746	human	ensembl	74_37	+1	known	missense	c.1895	p.T632M	1.000	pfam_DUF221	pfam_DUF221	-	no_errors	TMEM63B	HGNC	ENSG00000137216				63	0	0	68	15	18.0723
TDRD6	0	genome.wustl.edu	37	6	46659717	46659717	+	Silent	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	46659717	46659717	A	G	SNP	TDRD6	ENST00000316081	human	ensembl	74_37	+1	known	silent	c.3852	p.S1284	0.000	NULL	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD6	HGNC	ENSG00000180113				57	0	0	37	16	30.1887
TDRD6	0	genome.wustl.edu	37	6	46661387	46661387	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	46661387	46661387	C	T	SNP	TDRD6	ENST00000316081	human	ensembl	74_37	+1	known	missense	c.5522	p.P1841L	0.009	NULL	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD6	HGNC	ENSG00000180113				97	0	0	76	34	30.9091
MEP1A	0	genome.wustl.edu	37	6	46803149	46803149	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	46803149	46803149	C	T	SNP	MEP1A	ENST00000230588	human	ensembl	74_37	+1	known	silent	c.1947	p.S649	0.031	pirsf_Pept_M12A_Meprin	pirsf_Pept_M12A_Meprin,pfam_Peptidase_M12A,pfam_MATH,pfam_MAM_dom,pfam_EG-like_dom,superfamily_TRAF-like,superfamily_ConA-like_lec_gl_sf,smart_Peptidase_Metallo,smart_MAM_dom,smart_MATH,prints_Peptidase_M12A,prints_MAM_dom,pfscan_EG-like_dom,pfscan_MATH,pfscan_MAM_dom	-	no_errors	MEP1A	HGNC	ENSG00000112818				15	0	0	13	4	23.5294
CD2AP	0	genome.wustl.edu	37	6	47471097	47471097	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	47471097	47471097	T	C	SNP	CD2AP	ENST00000359314	human	ensembl	74_37	+1	known	missense	c.86	p.V29A	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	CD2AP	HGNC	ENSG00000198087				68	0	0	37	14	27.451
OPN5	0	genome.wustl.edu	37	6	47759639	47759639	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	47759639	47759639	T	C	SNP	OPN5	ENST00000371211	human	ensembl	74_37	+1	known	missense	c.352	p.C118R	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Peropsin	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Peropsin	-	no_errors	OPN5	HGNC	ENSG00000124818				35	0	0	27	9	25
PGK2	0	genome.wustl.edu	37	6	49754751	49754751	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	49754751	49754751	G	A	SNP	PGK2	ENST00000304801	human	ensembl	74_37	-1	known	silent	c.150	p.C50	1.000	pfam_Phosphoglycerate_kinase,superfamily_Phosphoglycerate_kinase,prints_Phosphoglycerate_kinase	pfam_Phosphoglycerate_kinase,superfamily_Phosphoglycerate_kinase,prints_Phosphoglycerate_kinase	-	no_errors	PGK2	HGNC	ENSG00000170950				118	0	0	84	22	20.7547
PKHD1	0	genome.wustl.edu	37	6	51882291	51882291	+	Silent	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	51882291	51882291	A	G	SNP	PKHD1	ENST00000371117	human	ensembl	74_37	-1	known	silent	c.5517	p.I1839	0.013	NULL	pfam_IPT,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT,smart_PbH1	-	no_errors	PKHD1	HGNC	ENSG00000170927				178	0	0	122	36	22.7848
LRRC1	0	genome.wustl.edu	37	6	53706924	53706924	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	53706924	53706924	T	C	SNP	LRRC1	ENST00000370888	human	ensembl	74_37	+1	known	missense	c.176	p.V59A	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC1	HGNC	ENSG00000137269				50	0	0	46	10	17.8571
TINAG	0	genome.wustl.edu	37	6	54212213	54212213	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	54212213	54212213	C	T	SNP	TINAG	ENST00000259782	human	ensembl	74_37	+1	known	missense	c.797	p.A266V	0.998	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C	pfam_Peptidase_C1A_C,pfam_Somatomedin_B_dom,smart_Somatomedin_B_dom,smart_Peptidase_C1A_C,pfscan_Somatomedin_B_dom	-	no_errors	TINAG	HGNC	ENSG00000137251				59	0	0	33	7	17.5
PRIM2	0	genome.wustl.edu	37	6	57398247	57398247	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	57398247	57398247	G	T	SNP	PRIM2	ENST00000607273	human	ensembl	74_37	+1	known	missense	c.950	p.G317V	1.000	pfam_DNA_primase_lsu_euk/arc	pfam_DNA_primase_lsu_euk/arc	-	no_errors	PRIM2	HGNC	ENSG00000146143				203	1	0.490196	139	11	7.33333
LMBRD1	0	genome.wustl.edu	37	6	70423622	70423622	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	70423622	70423622	C	T	SNP	LMBRD1	ENST00000370577	human	ensembl	74_37	-1	known	missense	c.830	p.R277Q	1.000	NULL	pfam_LMBR1-like_membr_prot	-	no_errors	LMBRD1	HGNC	ENSG00000168216				64	0	0	48	5	9.43396
RIMS1	0	genome.wustl.edu	37	6	72889303	72889303	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	72889303	72889303	G	A	SNP	RIMS1	ENST00000521978	human	ensembl	74_37	+1	known	missense	c.497	p.R166Q	1.000	superfamily_Znf_FYVE_PHD,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS1	HGNC	ENSG00000079841				46	0	0	35	8	18.6047
KCNQ5	0	genome.wustl.edu	37	6	73902309	73902309	+	Silent	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	73902309	73902309	A	G	SNP	KCNQ5	ENST00000402622	human	ensembl	74_37	+1	known	silent	c.1761	p.K587	1.000	pfam_K_chnl_volt-dep_KCNQ_C	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ5	HGNC	ENSG00000185760				114	1	0.869565	89	13	12.7451
KCNQ5	0	genome.wustl.edu	37	6	73904255	73904255	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	73904255	73904255	C	T	SNP	KCNQ5	ENST00000402622	human	ensembl	74_37	+1	known	silent	c.1947	p.L649	0.996	pfam_K_chnl_volt-dep_KCNQ_C	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ5	HGNC	ENSG00000185760				76	0	0	42	19	31.1475
MB21D1	0	genome.wustl.edu	37	6	74150030	74150030	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	74150030	74150030	C	T	SNP	MB21D1	ENST00000370315	human	ensembl	74_37	-1	known	missense	c.1016	p.R339H	0.006	pfam_Mab-21_dom	pfam_Mab-21_dom	-	no_errors	MB21D1	HGNC	ENSG00000164430				77	0	0	50	12	19.3548
SLC35A1	0	genome.wustl.edu	37	6	88187198	88187198	+	Silent	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	88187198	88187198	C	A	SNP	SLC35A1	ENST00000369552	human	ensembl	74_37	+1	known	silent	c.135	p.T45	0.956	pirsf_UDP/CMP-sugar_transptr	pfam_Nuc_sug_transpt,pfam_UAA,pirsf_UDP/CMP-sugar_transptr,tigrfam_UDPgal_transpt	-	no_errors	SLC35A1	HGNC	ENSG00000164414				84	0	0	60	10	14.2857
MDN1	0	genome.wustl.edu	37	6	90354754	90354754	+	Silent	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	90354754	90354754	A	G	SNP	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	silent	c.16582	p.L5528	0.980	smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				73	0	0	51	11	17.7419
MDN1	0	genome.wustl.edu	37	6	90513053	90513053	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	90513053	90513053	A	G	SNP	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	missense	c.323	p.V108A	0.998	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				127	0	0	106	13	10.9244
FBXL4	0	genome.wustl.edu	37	6	99374804	99374804	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	99374804	99374804	G	A	SNP	FBXL4	ENST00000229971	human	ensembl	74_37	-1	known	missense	c.61	p.R21C	1.000	NULL	pfam_F-box_dom,superfamily_F-box_dom,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom	-	no_errors	FBXL4	HGNC	ENSG00000112234				108	0	0	81	21	20.5882
FAXC	0	genome.wustl.edu	37	6	99739692	99739692	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	99739692	99739692	A	T	SNP	FAXC	ENST00000389677	human	ensembl	74_37	-1	known	missense	c.828	p.D276E	1.000	superfamily_Glutathione-S-Trfase_C-like	superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like	-	no_errors	FAXC	HGNC	ENSG00000146267				112	0	0	69	19	21.5909
LRCH4	0	genome.wustl.edu	37	7	100175014	100175014	+	Splice_Site	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	100175014	100175014	T	C	SNP	LRCH4	ENST00000310300	human	ensembl	74_37	-1	known	splice_site	c.1179-2	e11-2	0.935	-	-	-	no_errors	LRCH4	HGNC	ENSG00000077454				15	0	0	13	4	23.5294
KMT2E	0	genome.wustl.edu	37	7	104742433	104742433	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	104742433	104742433	A	G	SNP	KMT2E	ENST00000257745	human	ensembl	74_37	+1	known	missense	c.1988	p.Q663R	1.000	NULL	pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_PHD-finger	-	no_errors	KMT2E	HGNC	ENSG00000005483				109	1	0.909091	91	26	22.2222
KMT2E	0	genome.wustl.edu	37	7	104748331	104748331	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	104748331	104748331	G	A	SNP	KMT2E	ENST00000257745	human	ensembl	74_37	+1	known	missense	c.3427	p.D1143N	0.999	NULL	pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_PHD-finger	-	no_errors	KMT2E	HGNC	ENSG00000005483				62	0	0	43	7	14
PHF14	0	genome.wustl.edu	37	7	11022051	11022051	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	11022051	11022051	A	C	SNP	PHF14	ENST00000403050	human	ensembl	74_37	+1	known	missense	c.165	p.E55D	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF14	HGNC	ENSG00000106443				45	0	0	30	5	14.2857
TMEM168	0	genome.wustl.edu	37	7	112407372	112407372	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	112407372	112407372	G	A	SNP	TMEM168	ENST00000312814	human	ensembl	74_37	-1	known	silent	c.1974	p.C658	1.000	NULL	superfamily_ConA-like_lec_gl_sf	-	no_errors	TMEM168	HGNC	ENSG00000146802				83	0	0	38	7	15.5556
FOXP2	0	genome.wustl.edu	37	7	114299690	114299690	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	114299690	114299690	A	G	SNP	FOXP2	ENST00000408937	human	ensembl	74_37	+1	known	missense	c.1684	p.T562A	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXP2	HGNC	ENSG00000128573				79	0	0	49	12	19.6721
CPED1	0	genome.wustl.edu	37	7	120629564	120629564	+	RNA	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	120629564	120629564	T	C	SNP	CPED1	ENST00000495036	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.981	-	-	-	no_errors	CPED1	HGNC	ENSG00000106034				30	0	0	12	5	29.4118
RNF148	0	genome.wustl.edu	37	7	122341990	122341990	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	122341990	122341990	C	T	SNP	RNF148	ENST00000434824	human	ensembl	74_37	-1	known	missense	c.815	p.R272H	1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF148	HGNC	ENSG00000235631				61	0	0	62	14	18.4211
SCIN	0	genome.wustl.edu	37	7	12683795	12683795	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	12683795	12683795	C	T	SNP	SCIN	ENST00000297029	human	ensembl	74_37	+1	known	silent	c.1614	p.N538	0.975	pfam_Gelsolin_dom,smart_Villin/Gelsolin,prints_Villin/Gelsolin	pfam_Gelsolin_dom,smart_Villin/Gelsolin,prints_Villin/Gelsolin	-	no_errors	SCIN	HGNC	ENSG00000006747				16	0	0	15	4	21.0526
LRRC4	0	genome.wustl.edu	37	7	127669218	127669218	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	127669218	127669218	C	T	SNP	LRRC4	ENST00000249363	human	ensembl	74_37	-1	known	silent	c.1476	p.T492	0.999	NULL	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRC4	HGNC	ENSG00000128594				92	0	0	70	20	22.2222
IMPDH1	0	genome.wustl.edu	37	7	128038480	128038480	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	128038480	128038480	G	A	SNP	IMPDH1	ENST00000338791	human	ensembl	74_37	-1	known	silent	c.1062	p.D354	0.096	pfam_IMP_DH_GMPRt,tigrfam_IMP_DH	pfam_IMP_DH_GMPRt,pfam_CBS_dom,pfam_2Npropane_dOase,pfam_FMN-dep_DH,smart_CBS_dom,tigrfam_IMP_DH	-	no_errors	IMPDH1	HGNC	ENSG00000106348				36	0	0	22	7	24.1379
CPA4	0	genome.wustl.edu	37	7	129950820	129950820	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	129950820	129950820	G	T	SNP	CPA4	ENST00000222482	human	ensembl	74_37	+1	known	missense	c.987	p.E329D	0.000	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPA4	HGNC	ENSG00000128510				99	0	0	63	13	17.1053
TTC26	0	genome.wustl.edu	37	7	138832998	138832998	+	Silent	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	138832998	138832998	T	C	SNP	TTC26	ENST00000464848	human	ensembl	74_37	+1	known	silent	c.592	p.L198	0.949	pfscan_TPR-contain_dom	smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC26	HGNC	ENSG00000105948				124	0	0	89	21	19.0909
SLC37A3	0	genome.wustl.edu	37	7	140051864	140051864	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	140051864	140051864	A	T	SNP	SLC37A3	ENST00000326232	human	ensembl	74_37	-1	known	missense	c.701	p.I234N	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC37A3	HGNC	ENSG00000157800				27	0	0	14	10	41.6667
CASP2	0	genome.wustl.edu	37	7	142997069	142997069	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	142997069	142997069	G	A	SNP	CASP2	ENST00000310447	human	ensembl	74_37	+1	known	silent	c.801	p.T267	0.000	pfam_Pept_C14_caspase,smart_Pept_C14A_p45_core,pirsf_Caspase_IL-1_beta,pfscan_Pept_C14_ICE_p20	pfam_Pept_C14_caspase,pfam_CARD,superfamily_DEATH-like_dom,smart_CARD,smart_Pept_C14A_p45_core,pirsf_Caspase_IL-1_beta,pfscan_CARD,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14A_p45_core	-	no_errors	CASP2	HGNC	ENSG00000106144				62	0	0	44	14	24.1379
FAM115A	0	genome.wustl.edu	37	7	143573696	143573696	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	143573696	143573696	C	T	SNP	FAM115A	ENST00000479870	human	ensembl	74_37	-1	known	silent	c.6	p.A2	0.766	NULL	NULL	-	no_errors	FAM115A	HGNC	ENSG00000198420				60	0	0	39	16	29.0909
OR2A14	0	genome.wustl.edu	37	7	143827119	143827119	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	143827119	143827119	G	T	SNP	OR2A14	ENST00000408899	human	ensembl	74_37	+1	known	missense	c.914	p.R305M	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2A14	HGNC	ENSG00000221938				118	0	0	82	27	24.7706
MICALL2	0	genome.wustl.edu	37	7	1478512	1478512	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	1478512	1478512	C	T	SNP	MICALL2	ENST00000297508	human	ensembl	74_37	-1	known	missense	c.2086	p.E696K	0.476	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM	-	no_errors	MICALL2	HGNC	ENSG00000164877				47	0	0	38	13	25.4902
CUL1	0	genome.wustl.edu	37	7	148496368	148496368	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	148496368	148496368	C	T	SNP	CUL1	ENST00000325222	human	ensembl	74_37	+1	known	missense	c.2138	p.A713V	1.000	pfam_Cullin_neddylation_domain,smart_Cullin_neddylation_domain	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL1	HGNC	ENSG00000055130				65	0	0	53	15	22.0588
ZNF425	0	genome.wustl.edu	37	7	148801590	148801590	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	148801590	148801590	C	T	SNP	ZNF425	ENST00000378061	human	ensembl	74_37	-1	known	missense	c.1373	p.R458H	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	ZNF425	HGNC	ENSG00000204947				32	0	0	25	10	28.5714
ZNF777	0	genome.wustl.edu	37	7	149129573	149129573	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	149129573	149129573	C	T	SNP	ZNF777	ENST00000247930	human	ensembl	74_37	-1	known	missense	c.1790	p.R597H	0.934	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_DUF3669_Znf,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF777	HGNC	ENSG00000196453				34	0	0	29	13	30.9524
SSPO	0	genome.wustl.edu	37	7	149505383	149505383	+	RNA	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	149505383	149505383	C	T	SNP	SSPO	ENST00000378016	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.845	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558				72	0	0	61	12	16.4384
KCNH2	0	genome.wustl.edu	37	7	150656686	150656686	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	150656686	150656686	C	G	SNP	KCNH2	ENST00000262186	human	ensembl	74_37	-1	known	missense	c.446	p.G149A	0.016	NULL	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_cNMP-bd_dom,pfam_PAS_fold,pfam_PAS_fold_3,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH2	HGNC	ENSG00000055118				26	0	0	16	6	27.2727
GALNT11	0	genome.wustl.edu	37	7	151802408	151802408	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	151802408	151802408	G	A	SNP	GALNT11	ENST00000320311	human	ensembl	74_37	+1	known	missense	c.665	p.R222H	1.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT11	HGNC	ENSG00000178234				78	0	0	60	4	6.25
KMT2C	0	genome.wustl.edu	37	7	151878749	151878749	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	151878749	151878749	G	A	SNP	KMT2C	ENST00000355193	human	ensembl	74_37	-1	known	nonsense	c.6196	p.R2066*	0.998	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2C	HGNC	ENSG00000055609				61	0	0	49	13	20.9677
PAXIP1	0	genome.wustl.edu	37	7	154739611	154739611	+	Splice_Site	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	154739611	154739611	A	G	SNP	PAXIP1	ENST00000397192	human	ensembl	74_37	-1	known	splice_site	c.2922+2	e17+2	1.000	-	-	-	no_errors	PAXIP1	HGNC	ENSG00000157212				149	0	0	110	26	19.1176
SHH	0	genome.wustl.edu	37	7	155599049	155599049	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	155599049	155599049	G	A	SNP	SHH	ENST00000297261	human	ensembl	74_37	-1	known	missense	c.503	p.A168V	1.000	pirsf_Hedgehog,pfam_Hedgehog_signaling_dom,superfamily_Hedgehog_sig/DD-Pept_Zn-bd_dom,prints_Hedgehog	pirsf_Hedgehog,pfam_Hedgehog_signaling_dom,pfam_Hint_dom,superfamily_Hedgehog_sig/DD-Pept_Zn-bd_dom,smart_Hint_dom_N,smart_Hint_dom_C,prints_Hedgehog,pfscan_Intein_splice_site	-	no_errors	SHH	HGNC	ENSG00000164690				40	0	0	35	5	12.5
HDAC9	0	genome.wustl.edu	37	7	18875107	18875107	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	18875107	18875107	C	T	SNP	HDAC9	ENST00000441542	human	ensembl	74_37	+1	known	silent	c.2484	p.N828	1.000	pfam_His_deacetylse_dom,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	pfam_His_deacetylse_dom,pfam_Hist_deacetylase_Gln_rich_N,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC9	HGNC	ENSG00000048052				55	0	0	25	13	34.2105
CDCA7L	0	genome.wustl.edu	37	7	21942601	21942601	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	21942601	21942601	C	T	SNP	CDCA7L	ENST00000406877	human	ensembl	74_37	-1	known	silent	c.1329	p.L443	1.000	pfam_Znf-4CXXC_R1	pfam_Znf-4CXXC_R1	-	no_errors	CDCA7L	HGNC	ENSG00000164649				78	0	0	73	4	5.19481
RAPGEF5	0	genome.wustl.edu	37	7	22206738	22206738	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	22206738	22206738	C	T	SNP	RAPGEF5	ENST00000344041	human	ensembl	74_37	-1	known	silent	c.774	p.T258	1.000	pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF5	HGNC	ENSG00000136237				52	0	0	29	10	25.641
HOXA2	0	genome.wustl.edu	37	7	27140675	27140675	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	27140675	27140675	G	A	SNP	HOXA2	ENST00000222718	human	ensembl	74_37	-1	known	silent	c.801	p.G267	0.991	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXA2	HGNC	ENSG00000105996				65	0	0	41	10	19.6078
HOXA5	0	genome.wustl.edu	37	7	27181672	27181672	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	27181672	27181672	G	A	SNP	HOXA5	ENST00000222726	human	ensembl	74_37	-1	known	missense	c.595	p.R199W	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_antennapedia	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa,prints_Homeobox_antennapedia	-	no_errors	HOXA5	HGNC	ENSG00000106004				57	0	0	41	7	14.5833
WIPF3	0	genome.wustl.edu	37	7	29918676	29918676	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	29918676	29918676	C	T	SNP	WIPF3	ENST00000242140	human	ensembl	74_37	+1	known	missense	c.275	p.A92V	0.174	NULL	pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	WIPF3	HGNC	ENSG00000122574				31	0	0	15	6	28.5714
CCDC129	0	genome.wustl.edu	37	7	31692254	31692254	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	31692254	31692254	G	T	SNP	CCDC129	ENST00000451887	human	ensembl	74_37	+1	known	missense	c.3024	p.R1008S	0.000	NULL	NULL	-	no_errors	CCDC129	HGNC	ENSG00000180347				51	0	0	30	6	16.6667
CCDC129	0	genome.wustl.edu	37	7	31692285	31692285	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	31692285	31692285	G	A	SNP	CCDC129	ENST00000451887	human	ensembl	74_37	+1	known	missense	c.3055	p.A1019T	0.000	NULL	NULL	-	no_errors	CCDC129	HGNC	ENSG00000180347				53	0	0	30	6	16.6667
HECW1	0	genome.wustl.edu	37	7	43477677	43477677	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	43477677	43477677	A	G	SNP	HECW1	ENST00000395891	human	ensembl	74_37	+1	known	missense	c.877	p.I293V	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_HECT,pfam_WW_dom,pfam_C2_dom,superfamily_HECT,superfamily_WW_dom,superfamily_C2_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_C2_dom,pfscan_WW_dom	-	no_errors	HECW1	HGNC	ENSG00000002746				93	0	0	81	18	18.1818
URGCP	0	genome.wustl.edu	37	7	43918266	43918266	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	43918266	43918266	C	T	SNP	URGCP	ENST00000453200	human	ensembl	74_37	-1	known	missense	c.796	p.V266M	0.994	NULL	superfamily_P-loop_NTPase,prints_GTP_binding_domain	-	no_errors	URGCP	HGNC	ENSG00000106608				37	0	0	27	9	25
NACAD	0	genome.wustl.edu	37	7	45120589	45120589	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	45120589	45120589	G	A	SNP	NACAD	ENST00000490531	human	ensembl	74_37	-1	known	silent	c.4437	p.A1479	0.936	NULL	pfam_Nas_poly-pep-assoc_cplx_dom,pfscan_Nas_poly-pep-assoc_cplx_dom	-	no_errors	NACAD	HGNC	ENSG00000136274				15	0	0	9	4	30.7692
ADCY1	0	genome.wustl.edu	37	7	45753312	45753312	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	45753312	45753312	G	A	SNP	ADCY1	ENST00000297323	human	ensembl	74_37	+1	known	silent	c.3078	p.R1026	0.994	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY1	HGNC	ENSG00000164742				64	0	0	44	9	16.9811
FOXK1	0	genome.wustl.edu	37	7	4794194	4794194	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	4794194	4794194	C	T	SNP	FOXK1	ENST00000328914	human	ensembl	74_37	+1	known	missense	c.851	p.A284V	0.984	NULL	pfam_TF_fork_head,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,smart_TF_fork_head,pfscan_FHA_dom,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXK1	HGNC	ENSG00000164916				35	0	0	23	2	8
TNRC18	0	genome.wustl.edu	37	7	5396806	5396806	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	5396806	5396806	G	A	SNP	TNRC18	ENST00000399537	human	ensembl	74_37	-1	known	silent	c.4935	p.P1645	1.000	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	TNRC18	HGNC	ENSG00000182095				18	0	0	12	7	36.8421
RNF216	0	genome.wustl.edu	37	7	5662498	5662498	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	5662498	5662498	C	T	SNP	RNF216	ENST00000389902	human	ensembl	74_37	-1	known	missense	c.2765	p.R922H	1.000	NULL	smart_Znf_C6HC	-	no_errors	RNF216	HGNC	ENSG00000011275				104	0	0	77	13	14.4444
USP42	0	genome.wustl.edu	37	7	6155062	6155062	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	6155062	6155062	G	A	SNP	USP42	ENST00000306177	human	ensembl	74_37	+1	known	missense	c.350	p.G117D	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP42	HGNC	ENSG00000106346				68	0	0	44	15	25.4237
ZNF107	0	genome.wustl.edu	37	7	64168629	64168629	+	Silent	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	64168629	64168629	A	G	SNP	ZNF107	ENST00000344930	human	ensembl	74_37	+1	known	silent	c.1947	p.S649	0.005	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF107	HGNC	ENSG00000196247				52	0	0	47	10	17.5439
CALN1	0	genome.wustl.edu	37	7	71252835	71252835	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	71252835	71252835	G	A	SNP	CALN1	ENST00000395275	human	ensembl	74_37	-1	known	silent	c.711	p.C237	1.000	NULL	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	CALN1	HGNC	ENSG00000183166				44	0	0	38	7	15.5556
PHTF2	0	genome.wustl.edu	37	7	77567104	77567104	+	Silent	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	77567104	77567104	T	C	SNP	PHTF2	ENST00000248550	human	ensembl	74_37	+1	known	silent	c.1416	p.C472	0.999	NULL	pfam_TF_homeodomain_male	-	no_errors	PHTF2	HGNC	ENSG00000006576				26	0	0	22	5	18.5185
MAGI2	0	genome.wustl.edu	37	7	78636481	78636481	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	78636481	78636481	G	A	SNP	MAGI2	ENST00000354212	human	ensembl	74_37	-1	known	nonsense	c.343	p.R115*	1.000	smart_GK/Ca_channel_bsu,pfscan_Guanylate_kin-like	pfam_PDZ,pfam_WW_dom,pfam_GK/Ca_channel_bsu,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_PDZ,smart_GK/Ca_channel_bsu,smart_WW_dom,pfscan_PDZ,pfscan_WW_dom,pfscan_Guanylate_kin-like	-	no_errors	MAGI2	HGNC	ENSG00000187391				73	0	0	39	10	20.4082
GNAT3	0	genome.wustl.edu	37	7	80108232	80108232	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	80108232	80108232	C	T	SNP	GNAT3	ENST00000398291	human	ensembl	74_37	-1	known	missense	c.386	p.R129Q	0.963	pfam_Gprotein_alpha_su,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_I	-	no_errors	GNAT3	HGNC	ENSG00000214415				116	0	0	60	17	22.0779
GLCCI1	0	genome.wustl.edu	37	7	8125841	8125841	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	8125841	8125841	G	A	SNP	GLCCI1	ENST00000223145	human	ensembl	74_37	+1	known	silent	c.1317	p.S439	1.000	NULL	NULL	-	no_errors	GLCCI1	HGNC	ENSG00000106415				155	0	0	94	39	29.3233
PCLO	0	genome.wustl.edu	37	7	82544741	82544741	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	82544741	82544741	C	T	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	silent	c.12561	p.K4187	1.000	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				65	0	0	44	11	20
SUN1	0	genome.wustl.edu	37	7	888201	888201	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	888201	888201	T	C	SNP	SUN1	ENST00000456758	human	ensembl	74_37	+1	known	missense	c.979	p.S327P	1.000	NULL	pfam_SUN1,pfam_Sad1_UNC_C	-	no_errors	SUN1	HGNC	ENSG00000164828				79	0	0	66	20	23.2558
ZNF804B	0	genome.wustl.edu	37	7	88963180	88963180	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	88963180	88963180	C	A	SNP	ZNF804B	ENST00000333190	human	ensembl	74_37	+1	known	missense	c.884	p.T295N	0.000	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804B	HGNC	ENSG00000182348				67	0	0	31	7	18.4211
AKAP9	0	genome.wustl.edu	37	7	91632476	91632476	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	91632476	91632476	C	T	SNP	AKAP9	ENST00000359028	human	ensembl	74_37	+1	known	missense	c.3281	p.S1094L	0.076	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB	-	no_errors	AKAP9	HGNC	ENSG00000127914				80	0	0	70	13	15.6627
CASD1	0	genome.wustl.edu	37	7	94168365	94168365	+	Silent	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	94168365	94168365	T	C	SNP	CASD1	ENST00000297273	human	ensembl	74_37	+1	known	silent	c.1353	p.S451	1.000	pfam_Cas1_AcylTrans_dom	pfam_Cas1_AcylTrans_dom,superfamily_Cyclin-like	-	no_errors	CASD1	HGNC	ENSG00000127995				47	0	0	32	8	20
DLX5	0	genome.wustl.edu	37	7	96651485	96651485	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	96651485	96651485	C	T	SNP	DLX5	ENST00000486603	human	ensembl	74_37	-1	putative	silent	c.552	p.A184	0.001	smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Distal-less_N,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	DLX5	HGNC	ENSG00000105880				49	0	0	33	5	13.1579
BAIAP2L1	0	genome.wustl.edu	37	7	97935802	97935802	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	97935802	97935802	G	A	SNP	BAIAP2L1	ENST00000005260	human	ensembl	74_37	-1	known	missense	c.1190	p.T397M	0.997	superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_IRSp53/MIM_homology_IMD,pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	BAIAP2L1	HGNC	ENSG00000006453				92	0	0	66	16	19.5122
TRRAP	0	genome.wustl.edu	37	7	98534814	98534814	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	98534814	98534814	A	G	SNP	TRRAP	ENST00000359863	human	ensembl	74_37	+1	known	missense	c.4147	p.R1383G	1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	TRRAP	HGNC	ENSG00000196367				233	0	0	157	45	22.2772
VPS13B	0	genome.wustl.edu	37	8	100844800	100844800	+	Silent	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	100844800	100844800	A	G	SNP	VPS13B	ENST00000358544	human	ensembl	74_37	+1	known	silent	c.9609	p.P3203	0.999	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549				66	0	0	50	15	23.0769
SPAG1	0	genome.wustl.edu	37	8	101243518	101243518	+	Splice_Site	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	101243518	101243518	C	T	SNP	SPAG1	ENST00000251809	human	ensembl	74_37	+1	known	splice_site	c.1988+2	e14+2	1.000	-	-	-	no_errors	SPAG1	HGNC	ENSG00000104450				68	0	0	71	13	15.4762
MSRA	0	genome.wustl.edu	37	8	10159084	10159084	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	10159084	10159084	G	T	SNP	MSRA	ENST00000317173	human	ensembl	74_37	+1	known	missense	c.372	p.Q124H	1.000	pfam_Met_Sox_Rdtase_MsrA,superfamily_Met_Sox_Rdtase_MsrA,tigrfam_Met_Sox_Rdtase_MsrA	pfam_Met_Sox_Rdtase_MsrA,superfamily_Met_Sox_Rdtase_MsrA,tigrfam_Met_Sox_Rdtase_MsrA	-	no_errors	MSRA	HGNC	ENSG00000175806				88	0	0	81	12	12.9032
UBR5	0	genome.wustl.edu	37	8	103297968	103297968	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	103297968	103297968	G	A	SNP	UBR5	ENST00000520539	human	ensembl	74_37	-1	known	missense	c.5257	p.R1753C	1.000	NULL	pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_RCC1/BLIP-II,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin	-	no_errors	UBR5	HGNC	ENSG00000104517				62	0	0	53	14	20.8955
RP1L1	0	genome.wustl.edu	37	8	10468221	10468221	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	10468221	10468221	C	T	SNP	RP1L1	ENST00000382483	human	ensembl	74_37	-1	known	silent	c.3387	p.E1129	0.021	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1L1	HGNC	ENSG00000183638				60	0	0	55	20	26.6667
RP1L1	0	genome.wustl.edu	37	8	10469625	10469625	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	10469625	10469625	C	T	SNP	RP1L1	ENST00000382483	human	ensembl	74_37	-1	known	silent	c.1983	p.P661	0.003	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1L1	HGNC	ENSG00000183638				60	0	0	62	8	11.4286
NUDCD1	0	genome.wustl.edu	37	8	110255326	110255326	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	110255326	110255326	G	T	SNP	NUDCD1	ENST00000239690	human	ensembl	74_37	-1	known	missense	c.1664	p.P555H	1.000	NULL	pfam_CS_dom,superfamily_HSP20-like_chaperone,pfscan_CS_dom	-	no_errors	NUDCD1	HGNC	ENSG00000120526				198	0	0	150	75	33.3333
CSMD3	0	genome.wustl.edu	37	8	113326150	113326150	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	113326150	113326150	G	A	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	missense	c.7681	p.R2561W	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				94	0	0	80	13	13.9785
CSMD3	0	genome.wustl.edu	37	8	114448937	114448937	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	114448937	114448937	G	A	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	silent	c.147	p.L49	1.000	NULL	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				233	0	0	206	49	19.2157
GATA4	0	genome.wustl.edu	37	8	11615818	11615818	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	11615818	11615818	C	T	SNP	GATA4	ENST00000335135	human	ensembl	74_37	+1	known	missense	c.1163	p.A388V	0.154	pirsf_TF_GATA_4/5/6	pfam_GATA_N,pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA_4/5/6,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA4	HGNC	ENSG00000136574				91	0	0	90	17	15.8879
EXT1	0	genome.wustl.edu	37	8	118819559	118819559	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	118819559	118819559	C	T	SNP	EXT1	ENST00000378204	human	ensembl	74_37	-1	known	missense	c.1780	p.A594T	1.000	pfam_HexNAc_Trfase_a	pfam_HexNAc_Trfase_a,pfam_Exostosin	-	no_errors	EXT1	HGNC	ENSG00000182197				53	0	0	48	14	22.5806
ENPP2	0	genome.wustl.edu	37	8	120596014	120596014	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	120596014	120596014	T	C	SNP	ENPP2	ENST00000259486	human	ensembl	74_37	-1	known	missense	c.1642	p.K548E	1.000	superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,pfam_Somatomedin_B_dom,pfam_DNA/RNA_non-sp_Endonuclease,superfamily_Alkaline_phosphatase_core,smart_Somatomedin_B_dom,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A,pfscan_Somatomedin_B_dom,prints_Somatomedin_B_chordata	-	no_errors	ENPP2	HGNC	ENSG00000136960				55	0	0	59	9	13.2353
DSCC1	0	genome.wustl.edu	37	8	120854138	120854138	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	120854138	120854138	G	A	SNP	DSCC1	ENST00000313655	human	ensembl	74_37	-1	known	nonsense	c.820	p.R274*	0.251	pfam_Sister_chromatid_cohesion_Dcc1	pfam_Sister_chromatid_cohesion_Dcc1	-	no_errors	DSCC1	HGNC	ENSG00000136982				42	0	0	25	12	32.4324
COL14A1	0	genome.wustl.edu	37	8	121282285	121282285	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	121282285	121282285	G	A	SNP	COL14A1	ENST00000297848	human	ensembl	74_37	+1	known	missense	c.3085	p.A1029T	1.000	NULL	pfam_VWF_A,pfam_Fibronectin_type3,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL14A1	HGNC	ENSG00000187955				79	0	0	68	8	10.5263
ZHX1	0	genome.wustl.edu	37	8	124267220	124267220	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	124267220	124267220	A	G	SNP	ZHX1	ENST00000297857	human	ensembl	74_37	-1	known	missense	c.967	p.Y323H	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZHX1	HGNC	ENSG00000165156				246	1	0.404858	229	62	21.3058
ATAD2	0	genome.wustl.edu	37	8	124383982	124383982	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	124383982	124383982	C	T	SNP	ATAD2	ENST00000287394	human	ensembl	74_37	-1	known	missense	c.464	p.R155H	1.000	NULL	pfam_ATPase_AAA_core,pfam_Bromodomain,superfamily_P-loop_NTPase,superfamily_Bromodomain,smart_AAA+_ATPase,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	ATAD2	HGNC	ENSG00000156802				63	0	0	43	12	21.8182
NDUFB9	0	genome.wustl.edu	37	8	125559294	125559294	+	Silent	SNP	T	T	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	125559294	125559294	T	G	SNP	NDUFB9	ENST00000276689	human	ensembl	74_37	+1	known	silent	c.348	p.P116	0.938	NULL	pfam_Complex1_LYR	-	no_errors	NDUFB9	HGNC	ENSG00000147684				217	0	0	187	52	21.7573
KIAA0196	0	genome.wustl.edu	37	8	126062902	126062902	+	Silent	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	126062902	126062902	A	G	SNP	KIAA0196	ENST00000318410	human	ensembl	74_37	-1	known	silent	c.2103	p.D701	1.000	pfam_WASH_strumpellin	pfam_WASH_strumpellin,superfamily_Ig_E-set	-	no_errors	KIAA0196	HGNC	ENSG00000164961				57	0	0	40	4	9.09091
FAM49B	0	genome.wustl.edu	37	8	130863080	130863080	+	Splice_Site	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	130863080	130863080	C	T	SNP	FAM49B	ENST00000401979	human	ensembl	74_37	-1	known	splice_site	c.713+1	e7+1	1.000	-	-	-	no_errors	FAM49B	HGNC	ENSG00000153310				62	0	0	41	15	26.7857
PHF20L1	0	genome.wustl.edu	37	8	133848813	133848813	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	133848813	133848813	T	A	SNP	PHF20L1	ENST00000220847	human	ensembl	74_37	+1	known	missense	c.99	p.D33E	0.998	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD	-	no_errors	PHF20L1	HGNC	ENSG00000129292				51	0	0	58	9	13.4328
TG	0	genome.wustl.edu	37	8	133913747	133913747	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	133913747	133913747	G	A	SNP	TG	ENST00000220616	human	ensembl	74_37	+1	known	missense	c.3583	p.G1195R	0.987	pfam_Thyroglobulin_1,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	pfam_Thyroglobulin_1,pfam_CarbesteraseB,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	-	no_errors	TG	HGNC	ENSG00000042832				31	0	0	13	8	38.0952
ST3GAL1	0	genome.wustl.edu	37	8	134488056	134488056	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	134488056	134488056	G	A	SNP	ST3GAL1	ENST00000319914	human	ensembl	74_37	-1	known	missense	c.212	p.S71L	0.062	pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST3GAL1	HGNC	ENSG00000008513				45	0	0	37	8	17.7778
ZFAT	0	genome.wustl.edu	37	8	135614560	135614560	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	135614560	135614560	C	T	SNP	ZFAT	ENST00000377838	human	ensembl	74_37	-1	known	missense	c.1402	p.V468I	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFAT	HGNC	ENSG00000066827				49	0	0	34	8	19.0476
PTP4A3	0	genome.wustl.edu	37	8	142441050	142441050	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	142441050	142441050	G	A	SNP	PTP4A3	ENST00000329397	human	ensembl	74_37	+1	known	missense	c.428	p.S143N	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Dual-sp_phosphatase_cat-dom,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Dual-sp_phosphatase_cat-dom,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase	-	no_errors	PTP4A3	HGNC	ENSG00000184489				55	0	0	35	11	23.913
TOP1MT	0	genome.wustl.edu	37	8	144403471	144403471	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	144403471	144403471	T	C	SNP	TOP1MT	ENST00000329245	human	ensembl	74_37	-1	known	missense	c.1046	p.Q349R	0.585	pfam_TopoI_cat_euk,superfamily_DNA_brk_join_enz,smart_TopoI_euk	pfam_TopoI_DNA-bd_euk,pfam_TopoI_cat_euk,superfamily_TopoI_DNA-bd_euk,superfamily_DNA_brk_join_enz,smart_TopoI_euk,prints_TopoI	-	no_errors	TOP1MT	HGNC	ENSG00000184428				21	0	0	20	2	9.09091
ZC3H3	0	genome.wustl.edu	37	8	144547949	144547949	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	144547949	144547949	C	T	SNP	ZC3H3	ENST00000262577	human	ensembl	74_37	-1	known	missense	c.2245	p.V749M	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H3	HGNC	ENSG00000014164				30	0	0	49	5	9.25926
ZNF707	0	genome.wustl.edu	37	8	144776046	144776046	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	144776046	144776046	G	A	SNP	ZNF707	ENST00000358656	human	ensembl	74_37	+1	known	silent	c.462	p.T154	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF707	HGNC	ENSG00000181135				19	0	0	14	8	36.3636
SPATC1	0	genome.wustl.edu	37	8	145101719	145101719	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	145101719	145101719	C	T	SNP	SPATC1	ENST00000377470	human	ensembl	74_37	+1	known	silent	c.1638	p.G546	0.002	NULL	NULL	-	no_errors	SPATC1	HGNC	ENSG00000186583				33	0	0	34	7	17.0732
FBXL6	0	genome.wustl.edu	37	8	145580725	145580725	+	Silent	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	145580725	145580725	A	G	SNP	FBXL6	ENST00000331890	human	ensembl	74_37	-1	known	silent	c.696	p.G232	0.065	smart_Leu-rich_rpt_Cys-con_subtyp	superfamily_F-box_dom,smart_Leu-rich_rpt_Cys-con_subtyp	-	no_errors	FBXL6	HGNC	ENSG00000182325				30	0	0	21	7	25
SLC52A2	0	genome.wustl.edu	37	8	145583729	145583729	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	145583729	145583729	G	A	SNP	SLC52A2	ENST00000329994	human	ensembl	74_37	+1	known	missense	c.577	p.A193T	0.907	NULL	pfam_Endogenous_retrovirus_rcpt	-	no_errors	SLC52A2	HGNC	ENSG00000185803				58	0	0	46	13	22.0339
SLC39A4	0	genome.wustl.edu	37	8	145638280	145638280	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	145638280	145638280	G	A	SNP	SLC39A4	ENST00000301305	human	ensembl	74_37	-1	known	silent	c.1678	p.L560	1.000	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A4	HGNC	ENSG00000147804				8	0	0	10	5	33.3333
CYHR1	0	genome.wustl.edu	37	8	145689776	145689776	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	145689776	145689776	C	T	SNP	CYHR1	ENST00000306145	human	ensembl	74_37	-1	known	missense	c.313	p.G105S	0.871	NULL	NULL	-	no_errors	CYHR1	HGNC	ENSG00000187954				29	0	0	30	6	16.6667
RECQL4	0	genome.wustl.edu	37	8	145741187	145741187	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	145741187	145741187	C	T	SNP	RECQL4	ENST00000428558	human	ensembl	74_37	-1	known	missense	c.1219	p.E407K	0.567	NULL	pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_DNA_rep_checkpnt_protein,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	RECQL4	HGNC	ENSG00000160957				31	0	0	20	12	37.5
LRRC14	0	genome.wustl.edu	37	8	145749481	145749481	+	RNA	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	145749481	145749481	G	A	SNP	LRRC14	ENST00000528528	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LRRC14	HGNC	ENSG00000160959				104	1	0.952381	110	23	17.2932
SLC7A2	0	genome.wustl.edu	37	8	17401110	17401110	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	17401110	17401110	G	A	SNP	SLC7A2	ENST00000004531	human	ensembl	74_37	+1	known	missense	c.382	p.E128K	1.000	pfam_AA-permease/SLC12A_dom,tigrfam_Cat_AA_permease	pfam_AA-permease/SLC12A_dom,tigrfam_Cat_AA_permease	-	no_errors	SLC7A2	HGNC	ENSG00000003989				46	0	0	29	23	44.2308
CSGALNACT1	0	genome.wustl.edu	37	8	19263582	19263582	+	Splice_Site	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	19263582	19263582	T	C	SNP	CSGALNACT1	ENST00000311540	human	ensembl	74_37	-1	known	splice_site	c.1310-2	e7-2	1.000	-	-	-	no_errors	CSGALNACT1	HGNC	ENSG00000147408				88	0	0	54	41	43.1579
ZNF596	0	genome.wustl.edu	37	8	196042	196042	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	196042	196042	G	T	SNP	ZNF596	ENST00000308811	human	ensembl	74_37	+1	known	missense	c.1195	p.A399S	0.755	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF596	HGNC	ENSG00000172748				96	0	0	79	18	18.5567
CCAR2	0	genome.wustl.edu	37	8	22471699	22471699	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	22471699	22471699	T	G	SNP	CCAR2	ENST00000308511	human	ensembl	74_37	+1	known	missense	c.799	p.F267V	1.000	NULL	superfamily_NA-bd_OB-fold	-	no_errors	CCAR2	HGNC	ENSG00000158941				42	0	0	35	15	30
CCAR2	0	genome.wustl.edu	37	8	22473240	22473240	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	22473240	22473240	G	A	SNP	CCAR2	ENST00000308511	human	ensembl	74_37	+1	known	missense	c.1423	p.A475T	0.993	NULL	superfamily_NA-bd_OB-fold	-	no_errors	CCAR2	HGNC	ENSG00000158941				54	0	0	76	15	16.4835
EGR3	0	genome.wustl.edu	37	8	22548748	22548748	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	22548748	22548748	C	A	SNP	EGR3	ENST00000317216	human	ensembl	74_37	-1	known	missense	c.402	p.Q134H	1.000	pfam_DUF3446	pfam_DUF3446,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	EGR3	HGNC	ENSG00000179388				27	0	0	22	12	35.2941
RHOBTB2	0	genome.wustl.edu	37	8	22868168	22868168	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	22868168	22868168	C	T	SNP	RHOBTB2	ENST00000251822	human	ensembl	74_37	+1	known	missense	c.1738	p.R580C	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_BTB_POZ,pfam_Small_GTPase,pfam_MIRO-like,superfamily_P-loop_NTPase,superfamily_BTB/POZ_fold,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_BTB/POZ-like,pfscan_BTB/POZ-like,prints_Small_GTPase	-	no_errors	RHOBTB2	HGNC	ENSG00000008853				104	0	0	91	36	28.3465
LOXL2	0	genome.wustl.edu	37	8	23191084	23191084	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	23191084	23191084	T	C	SNP	LOXL2	ENST00000389131	human	ensembl	74_37	-1	known	missense	c.796	p.T266A	0.994	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_Lysyl_oxidase,pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_Lysyl_oxidase,prints_SRCR	-	no_errors	LOXL2	HGNC	ENSG00000134013				38	0	0	42	4	8.69565
NEFL	0	genome.wustl.edu	37	8	24813138	24813138	+	RNA	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	24813138	24813138	C	T	SNP	NEFL	ENST00000221169	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	NEFL	HGNC	ENSG00000104725				28	0	0	30	8	21.0526
ADRA1A	0	genome.wustl.edu	37	8	26721708	26721708	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	26721708	26721708	C	A	SNP	ADRA1A	ENST00000380586	human	ensembl	74_37	-1	known	missense	c.779	p.R260M	0.998	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_ADRA1A_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam	-	no_errors	ADRA1A	HGNC	ENSG00000120907				30	0	0	42	10	19.2308
PTK2B	0	genome.wustl.edu	37	8	27296915	27296915	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	27296915	27296915	G	A	SNP	PTK2B	ENST00000346049	human	ensembl	74_37	+1	known	missense	c.1834	p.A612T	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Focal_adhesion_kin_target_dom,pfam_Prot_kinase_dom,pfam_FERM_central,superfamily_Kinase-like_dom,superfamily_Focal_adhesion_kin_target_dom,superfamily_FERM_central,smart_Band_41_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PTK2B	HGNC	ENSG00000120899				78	0	0	54	29	34.9398
NUGGC	0	genome.wustl.edu	37	8	27922180	27922180	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	27922180	27922180	G	A	SNP	NUGGC	ENST00000341513	human	ensembl	74_37	-1	known	silent	c.780	p.A260	0.000	pfam_Dynamin_GTPase,superfamily_P-loop_NTPase	pfam_Dynamin_GTPase,superfamily_P-loop_NTPase	-	no_errors	NUGGC	HGNC	ENSG00000189233				42	0	0	59	10	14.4928
NUGGC	0	genome.wustl.edu	37	8	27925085	27925085	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	27925085	27925085	C	T	SNP	NUGGC	ENST00000341513	human	ensembl	74_37	-1	known	silent	c.657	p.A219	0.000	pfam_Dynamin_GTPase,superfamily_P-loop_NTPase	pfam_Dynamin_GTPase,superfamily_P-loop_NTPase	-	no_errors	NUGGC	HGNC	ENSG00000189233				34	0	0	27	10	27.027
EXTL3	0	genome.wustl.edu	37	8	28573543	28573543	+	RNA	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	28573543	28573543	C	T	SNP	EXTL3	ENST00000519886	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	EXTL3	HGNC	ENSG00000012232				19	0	0	12	6	33.3333
KIF13B	0	genome.wustl.edu	37	8	29025013	29025013	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	29025013	29025013	C	T	SNP	KIF13B	ENST00000524189	human	ensembl	74_37	-1	known	silent	c.1035	p.R345	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_CAP-Gly_domain,pfam_KIF1B,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_CAP-Gly_domain,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_CAP-Gly_domain,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF13B	HGNC	ENSG00000197892				99	0	0	77	20	20.6186
CSMD1	0	genome.wustl.edu	37	8	3019715	3019715	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	3019715	3019715	A	G	SNP	CSMD1	ENST00000520002	human	ensembl	74_37	-1	known	missense	c.5813	p.L1938P	0.998	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117				30	0	0	19	7	26.9231
TUBBP1	0	genome.wustl.edu	37	8	30209758	30209758	+	RNA	SNP	G	G	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	30209758	30209758	G	T	SNP	TUBBP1	ENST00000518096	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TUBBP1	HGNC	ENSG00000127589				83	0	0	71	11	13.4146
NRG1	0	genome.wustl.edu	37	8	32472059	32472059	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	32472059	32472059	C	T	SNP	NRG1	ENST00000338921	human	ensembl	74_37	+1	known	missense	c.428	p.T143I	1.000	NULL	pfam_Neuregulin_1_C,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Ig-like_dom,prints_Neuregulin	-	no_errors	NRG1	HGNC	ENSG00000157168				77	0	0	67	15	18.2927
PROSC	0	genome.wustl.edu	37	8	37632909	37632909	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	37632909	37632909	C	T	SNP	PROSC	ENST00000328195	human	ensembl	74_37	+1	known	silent	c.507	p.N169	0.000	pfam_Ala_racemase_N,pirsf_UPF0001,tigrfam_UPF0001	pfam_Ala_racemase_N,pirsf_UPF0001,tigrfam_UPF0001	-	no_errors	PROSC	HGNC	ENSG00000147471				226	0	0	204	52	20.3125
ADAM9	0	genome.wustl.edu	37	8	38912036	38912036	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	38912036	38912036	T	C	SNP	ADAM9	ENST00000487273	human	ensembl	74_37	+1	known	missense	c.1339	p.C447R	0.999	pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM9	HGNC	ENSG00000168615				88	0	0	39	23	37.0968
IDO2	0	genome.wustl.edu	37	8	39872860	39872860	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	39872860	39872860	C	T	SNP	IDO2	ENST00000502986	human	ensembl	74_37	+1	known	silent	c.1002	p.I334	0.568	pfam_Indolamine_dOase	pfam_Indolamine_dOase	-	no_errors	IDO2	HGNC	ENSG00000188676				67	0	0	54	13	19.403
KAT6A	0	genome.wustl.edu	37	8	41798536	41798536	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	41798536	41798536	G	T	SNP	KAT6A	ENST00000265713	human	ensembl	74_37	-1	known	missense	c.2863	p.P955T	0.525	NULL	pfam_MOZ_SAS,pfam_Znf_PHD-finger,superfamily_Acyl_CoA_acyltransferase,superfamily_Znf_FYVE_PHD,smart_Histone_H1/H5_H15,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	KAT6A	HGNC	ENSG00000083168				99	0	0	122	25	17.0068
POTEA	0	genome.wustl.edu	37	8	43173622	43173622	+	RNA	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	43173622	43173622	T	C	SNP	POTEA	ENST00000522175	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	POTEA	HGNC	ENSG00000188877				96	0	0	89	18	16.8224
PRKDC	0	genome.wustl.edu	37	8	48809839	48809839	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	48809839	48809839	G	A	SNP	PRKDC	ENST00000314191	human	ensembl	74_37	-1	known	silent	c.3480	p.S1160	0.000	superfamily_ARM-type_fold	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729				217	0	0	198	45	18.5185
MCM4	0	genome.wustl.edu	37	8	48888298	48888298	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	48888298	48888298	C	T	SNP	MCM4	ENST00000262105	human	ensembl	74_37	+1	known	missense	c.2389	p.R797W	1.000	NULL	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_NA-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_4,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM4	HGNC	ENSG00000104738				52	0	0	42	16	27.5862
ST18	0	genome.wustl.edu	37	8	53055565	53055565	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	53055565	53055565	T	A	SNP	ST18	ENST00000276480	human	ensembl	74_37	-1	known	missense	c.2093	p.K698M	0.999	pfam_Myelin_TF	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	ST18	HGNC	ENSG00000147488				86	0	0	26	51	66.2338
FAM110B	0	genome.wustl.edu	37	8	59059757	59059757	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	59059757	59059757	A	G	SNP	FAM110B	ENST00000361488	human	ensembl	74_37	+1	known	missense	c.968	p.D323G	1.000	NULL	NULL	-	no_errors	FAM110B	HGNC	ENSG00000169122				45	0	0	37	9	19.5652
ARFGEF1	0	genome.wustl.edu	37	8	68189648	68189648	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	68189648	68189648	T	C	SNP	ARFGEF1	ENST00000262215	human	ensembl	74_37	-1	known	missense	c.1072	p.I358V	0.958	superfamily_ARM-type_fold	pfam_Sec7_dom,pfam_DUF1981_Sec7_assoc,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	-	no_errors	ARFGEF1	HGNC	ENSG00000066777				64	0	0	59	8	11.9403
SLCO5A1	0	genome.wustl.edu	37	8	70744031	70744031	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	70744031	70744031	A	G	SNP	SLCO5A1	ENST00000260126	human	ensembl	74_37	-1	known	missense	c.878	p.V293A	1.000	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO5A1	HGNC	ENSG00000137571				85	0	0	51	29	36.25
ZFHX4	0	genome.wustl.edu	37	8	77617605	77617605	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	77617605	77617605	T	C	SNP	ZFHX4	ENST00000521891	human	ensembl	74_37	+1	known	missense	c.1282	p.S428P	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656				51	0	0	68	10	12.8205
SGK223	0	genome.wustl.edu	37	8	8185550	8185550	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	8185550	8185550	G	A	SNP	SGK223	ENST00000330777	human	ensembl	74_37	-1	known	silent	c.2742	p.P914	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	SGK223	Uniprot_gn	ENSG00000182319				29	0	0	31	8	20.5128
PAG1	0	genome.wustl.edu	37	8	81897170	81897170	+	Silent	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	81897170	81897170	A	G	SNP	PAG1	ENST00000220597	human	ensembl	74_37	-1	known	silent	c.717	p.S239	0.355	NULL	NULL	-	no_errors	PAG1	HGNC	ENSG00000076641				100	0	0	84	18	17.6471
MFHAS1	0	genome.wustl.edu	37	8	8748408	8748408	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	8748408	8748408	C	T	SNP	MFHAS1	ENST00000276282	human	ensembl	74_37	-1	known	missense	c.2161	p.A721T	0.940	NULL	pfam_Leu-rich_rpt,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	MFHAS1	HGNC	ENSG00000147324				36	0	0	47	5	9.61538
ERI1	0	genome.wustl.edu	37	8	8869198	8869198	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	8869198	8869198	C	T	SNP	ERI1	ENST00000250263	human	ensembl	74_37	+1	known	missense	c.434	p.P145L	0.986	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	pfam_Exonuclease_RNaseT/DNA_pol3,pfam_SAP_dom,superfamily_RNaseH-like_dom,smart_SAP_dom,smart_Exonuclease,pfscan_SAP_dom	-	no_errors	ERI1	HGNC	ENSG00000104626				59	0	0	31	13	29.5455
TNKS	0	genome.wustl.edu	37	8	9634228	9634228	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	9634228	9634228	C	T	SNP	TNKS	ENST00000310430	human	ensembl	74_37	+1	known	silent	c.3966	p.A1322	0.020	NULL	pfam_Ankyrin_rpt,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_SAM_2,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_Poly(ADP-ribose)pol_cat_dom,prints_Ankyrin_rpt	-	no_errors	TNKS	HGNC	ENSG00000173273				44	0	0	54	19	26.0274
MATN2	0	genome.wustl.edu	37	8	98943434	98943434	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	98943434	98943434	G	A	SNP	MATN2	ENST00000254898	human	ensembl	74_37	+1	known	silent	c.396	p.T132	0.002	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_Matrilin_coiled-coil_trimer,smart_VWF_A,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_VWF_A	-	no_errors	MATN2	HGNC	ENSG00000132561				53	0	0	27	8	22.8571
GABBR2	0	genome.wustl.edu	37	9	101340346	101340346	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	9	101340346	101340346	G	A	SNP	GABBR2	ENST00000259455	human	ensembl	74_37	-1	known	silent	c.330	p.N110	0.981	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_GPCR_3_C,pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_GPCR_3_GABA_rcpt_B2,prints_GPCR_3_GABA_rcpt_B,prints_GPCR_3_GABA_rcpt_B1,prints_GPCR_3,pfscan_GPCR_3_C	-	no_errors	GABBR2	HGNC	ENSG00000136928				67	0	0	29	16	35.5556
PTPN3	0	genome.wustl.edu	37	9	112166777	112166777	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	9	112166777	112166777	G	A	SNP	PTPN3	ENST00000374541	human	ensembl	74_37	-1	known	missense	c.1904	p.A635V	0.946	pirsf_Tyr_Pase_non-rcpt_typ-3/4	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_PDZ,pfam_Dual-sp_phosphatase_cat-dom,superfamily_FERM_central,superfamily_PDZ,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-3/4,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,prints_Ez/rad/moesin_like,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN3	HGNC	ENSG00000070159				102	0	0	44	10	18.5185
SVEP1	0	genome.wustl.edu	37	9	113261516	113261516	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	9	113261516	113261516	G	A	SNP	SVEP1	ENST00000401783	human	ensembl	74_37	-1	known	missense	c.1486	p.R496C	0.997	superfamily_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_EG-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Growth_fac_rcpt_N_dom,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124				51	0	0	21	6	22.2222
DNAJC25-GNG10	0	genome.wustl.edu	37	9	114429191	114429191	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	9	114429191	114429191	C	T	SNP	DNAJC25-GNG10	ENST00000374294	human	ensembl	74_37	+1	known	missense	c.433	p.R145W	1.000	pfam_G-protein_gamma-like_dom,smart_G-protein_gamma-like_dom,pfscan_G-protein_gamma-like_dom,prints_Gprotein-gamma	pfam_DnaJ_domain,pfam_G-protein_gamma-like_dom,superfamily_DnaJ_domain,smart_DnaJ_domain,smart_G-protein_gamma-like_dom,pfscan_DnaJ_domain,pfscan_G-protein_gamma-like_dom,prints_DnaJ_domain,prints_Gprotein-gamma	-	no_errors	DNAJC25-GNG10	HGNC	ENSG00000244115				43	0	0	17	8	32
WDR31	0	genome.wustl.edu	37	9	116082681	116082681	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	9	116082681	116082681	T	C	SNP	WDR31	ENST00000374193	human	ensembl	74_37	-1	known	missense	c.736	p.I246V	0.001	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR31	HGNC	ENSG00000148225				81	0	0	44	15	25.4237
TNC	0	genome.wustl.edu	37	9	117838694	117838694	+	Silent	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	9	117838694	117838694	T	C	SNP	TNC	ENST00000350763	human	ensembl	74_37	-1	known	silent	c.2835	p.Q945	0.998	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNC	HGNC	ENSG00000041982				126	0	0	60	23	27.7108
DAB2IP	0	genome.wustl.edu	37	9	124532969	124532969	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	9	124532969	124532969	C	T	SNP	DAB2IP	ENST00000408936	human	ensembl	74_37	+1	known	silent	c.2044	p.L682	1.000	pfam_DUF3498	pfam_DUF3498,pfam_RasGAP,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	DAB2IP	HGNC	ENSG00000136848				44	0	0	27	7	20.5882
OR1L3	0	genome.wustl.edu	37	9	125437936	125437936	+	Silent	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	9	125437936	125437936	T	C	SNP	OR1L3	ENST00000304820	human	ensembl	74_37	+1	known	silent	c.528	p.H176	0.947	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1L3	HGNC	ENSG00000171481				152	0	0	72	26	26.5306
PDCL	0	genome.wustl.edu	37	9	125582383	125582383	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	9	125582383	125582383	C	T	SNP	PDCL	ENST00000259467	human	ensembl	74_37	-1	known	missense	c.887	p.S296N	0.992	pfam_Phosducin_thioredoxin-like_dom	pfam_Phosducin_thioredoxin-like_dom,superfamily_Thioredoxin-like_fold,prints_Phosducin	-	no_errors	PDCL	HGNC	ENSG00000136940				79	0	0	42	12	22.2222
RABGAP1	0	genome.wustl.edu	37	9	125760928	125760928	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	9	125760928	125760928	G	T	SNP	RABGAP1	ENST00000373647	human	ensembl	74_37	+1	known	missense	c.1257	p.Q419H	1.000	pfam_Kinesin-like	pfam_Rab-GTPase-TBC_dom,pfam_Kinesin-like,pfam_PTB/PI_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTB/PI_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTB/PI_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	RABGAP1	HGNC	ENSG00000011454				137	0	0	56	31	35.6322
TYRP1	0	genome.wustl.edu	37	9	12694013	12694013	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	9	12694013	12694013	T	A	SNP	TYRP1	ENST00000388918	human	ensembl	74_37	+1	known	missense	c.17	p.L6H	0.001	NULL	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre,prints_Tyrosinase	-	no_errors	TYRP1	HGNC	ENSG00000107165				87	0	0	55	15	21.4286
ANGPTL2	0	genome.wustl.edu	37	9	129870708	129870708	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	9	129870708	129870708	C	T	SNP	ANGPTL2	ENST00000373425	human	ensembl	74_37	-1	known	silent	c.303	p.R101	0.999	NULL	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	ANGPTL2	HGNC	ENSG00000136859				21	0	0	15	3	16.6667
FAM129B	0	genome.wustl.edu	37	9	130294048	130294048	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	9	130294048	130294048	C	T	SNP	FAM129B	ENST00000373312	human	ensembl	74_37	-1	known	missense	c.65	p.G22E	0.910	NULL	pfscan_Pleckstrin_homology	-	no_errors	FAM129B	HGNC	ENSG00000136830				56	0	0	24	4	14.2857
ABL1	0	genome.wustl.edu	37	9	133730285	133730285	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	9	133730285	133730285	G	A	SNP	ABL1	ENST00000372348	human	ensembl	74_37	+1	known	silent	c.408	p.T136	0.018	pfam_SH3_2,smart_SH3_domain,pfscan_SH3_domain	pfam_F-actin_binding,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_F-actin_binding,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ABL1	HGNC	ENSG00000097007				78	0	0	38	9	19.1489
DDX31	0	genome.wustl.edu	37	9	135537951	135537951	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	9	135537951	135537951	G	A	SNP	DDX31	ENST00000372159	human	ensembl	74_37	-1	known	silent	c.522	p.N174	0.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX31	HGNC	ENSG00000125485				110	0	0	37	16	30.1887
REXO4	0	genome.wustl.edu	37	9	136279942	136279942	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	9	136279942	136279942	C	T	SNP	REXO4	ENST00000371935	human	ensembl	74_37	-1	known	nonsense	c.237	p.W79*	0.000	smart_Exonuclease	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	-	no_errors	REXO4	HGNC	ENSG00000148300				52	0	0	34	8	19.0476
ADAMTS13	0	genome.wustl.edu	37	9	136310835	136310835	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	9	136310835	136310835	G	A	SNP	ADAMTS13	ENST00000371929	human	ensembl	74_37	+1	known	missense	c.2626	p.A876T	0.012	NULL	pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,superfamily_CUB_dom,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS13	HGNC	ENSG00000160323				26	0	0	12	9	42.8571
TMEM8C	0	genome.wustl.edu	37	9	136384042	136384042	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	9	136384042	136384042	T	C	SNP	TMEM8C	ENST00000339996	human	ensembl	74_37	-1	known	missense	c.353	p.Y118C	1.000	pfam_DUF3522	pfam_DUF3522	-	no_errors	TMEM8C	HGNC	ENSG00000187616				58	0	0	37	13	26
AGPAT2	0	genome.wustl.edu	37	9	139571494	139571494	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	9	139571494	139571494	G	A	SNP	AGPAT2	ENST00000371696	human	ensembl	74_37	-1	known	silent	c.411	p.G137	0.293	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase,tigrfam_AGP_acyltrans	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase,tigrfam_AGP_acyltrans	-	no_errors	AGPAT2	HGNC	ENSG00000169692				57	0	0	44	20	31.25
TMEM203	0	genome.wustl.edu	37	9	140099729	140099729	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	9	140099729	140099729	C	A	SNP	TMEM203	ENST00000343666	human	ensembl	74_37	-1	known	missense	c.138	p.W46C	1.000	pfam_TM_Fragile-X-F-assoc	pfam_TM_Fragile-X-F-assoc	-	no_errors	TMEM203	HGNC	ENSG00000187713				14	0	0	8	5	38.4615
CACNA1B	0	genome.wustl.edu	37	9	140852062	140852062	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	9	140852062	140852062	C	T	SNP	CACNA1B	ENST00000371355	human	ensembl	74_37	+1	known	missense	c.1259	p.A420V	0.976	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_N_a1su,prints_PKD_2	-	no_errors	CACNA1B	HGNC	ENSG00000148408				12	0	0	12	4	25
PSIP1	0	genome.wustl.edu	37	9	15474206	15474206	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	9	15474206	15474206	T	C	SNP	PSIP1	ENST00000380733	human	ensembl	74_37	-1	known	missense	c.659	p.K220R	1.000	NULL	pfam_LEDGF,pfam_PWWP_dom,smart_PWWP_dom,pfscan_PWWP_dom,prints_Treacle-like_TCS	-	no_errors	PSIP1	HGNC	ENSG00000164985				163	0	0	75	28	27.1845
CBWD1	0	genome.wustl.edu	37	9	163985	163985	+	Silent	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	9	163985	163985	A	G	SNP	CBWD1	ENST00000356521	human	ensembl	74_37	-1	known	silent	c.483	p.Y161	0.999	pfam_CobW/HypB/UreG_dom,superfamily_P-loop_NTPase	pfam_CobW/HypB/UreG_dom,pfam_Cbl_biosynth_CobW-like_C,superfamily_P-loop_NTPase,superfamily_Cbl_biosynth_CobW-like_C	-	no_errors	CBWD1	HGNC	ENSG00000172785				64	0	0	32	7	17.9487
FOCAD	0	genome.wustl.edu	37	9	20923740	20923740	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	9	20923740	20923740	C	T	SNP	FOCAD	ENST00000338382	human	ensembl	74_37	+1	known	silent	c.2934	p.L978	0.989	superfamily_ARM-type_fold	pfam_DUF3028,pfam_DUF3730,superfamily_ARM-type_fold	-	no_errors	FOCAD	HGNC	ENSG00000188352				44	0	0	19	3	13.6364
PTENP1	0	genome.wustl.edu	37	9	33675379	33675379	+	RNA	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	9	33675379	33675379	C	A	SNP	PTENP1	ENST00000532280	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	PTENP1	HGNC	ENSG00000237984				16	0	0	6	3	33.3333
PTENP1	0	genome.wustl.edu	37	9	33675400	33675400	+	RNA	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	9	33675400	33675400	G	A	SNP	PTENP1	ENST00000532280	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PTENP1	HGNC	ENSG00000237984				24	0	0	11	3	21.4286
OR13J1	0	genome.wustl.edu	37	9	35869831	35869831	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	9	35869831	35869831	C	T	SNP	OR13J1	ENST00000377981	human	ensembl	74_37	-1	known	missense	c.568	p.G190S	0.074	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR13J1	HGNC	ENSG00000168828				53	0	0	24	13	35.1351
UHRF2	0	genome.wustl.edu	37	9	6475403	6475403	+	Silent	SNP	A	A	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	9	6475403	6475403	A	T	SNP	UHRF2	ENST00000276893	human	ensembl	74_37	+1	known	silent	c.876	p.G292	0.686	NULL	pfam_SRA_YDG,pfam_DUF3590,pfam_Ubiquitin_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Ubiquitin_dom,smart_Znf_PHD,smart_Znf_RING,smart_SRA_YDG,pfscan_SRA_YDG,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_Ubiquitin_supergroup	-	no_errors	UHRF2	HGNC	ENSG00000147854				167	0	0	97	23	19.1667
KDM4C	0	genome.wustl.edu	37	9	7015920	7015920	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	9	7015920	7015920	G	A	SNP	KDM4C	ENST00000381309	human	ensembl	74_37	+1	known	silent	c.2250	p.A750	0.046	superfamily_Znf_FYVE_PHD	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,superfamily_Chorismate_mutase_type_II,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4C	HGNC	ENSG00000107077				77	0	0	38	7	15.5556
TJP2	0	genome.wustl.edu	37	9	71827497	71827497	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	9	71827497	71827497	T	C	SNP	TJP2	ENST00000539225	human	ensembl	74_37	+1	known	missense	c.187	p.Y63H	1.000	superfamily_PDZ,prints_ZonOcculS2	pfam_PDZ,pfam_GK/Ca_channel_bsu,pfam_SH3_2,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_PDZ,smart_GK/Ca_channel_bsu,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like,prints_ZonOcculS2,prints_ZonOcculdens	-	no_errors	TJP2	HGNC	ENSG00000119139				91	0	0	36	5	12.1951
SMC5	0	genome.wustl.edu	37	9	72897463	72897463	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	9	72897463	72897463	C	T	SNP	SMC5	ENST00000361138	human	ensembl	74_37	+1	known	silent	c.945	p.N315	0.000	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase	-	no_errors	SMC5	HGNC	ENSG00000198887				99	0	0	53	20	27.3973
SMC5	0	genome.wustl.edu	37	9	72965075	72965075	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	9	72965075	72965075	A	G	SNP	SMC5	ENST00000361138	human	ensembl	74_37	+1	known	missense	c.2935	p.S979G	1.000	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase	-	no_errors	SMC5	HGNC	ENSG00000198887				53	0	0	24	5	17.2414
KANK1	0	genome.wustl.edu	37	9	732477	732477	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	9	732477	732477	G	A	SNP	KANK1	ENST00000382297	human	ensembl	74_37	+1	known	silent	c.3105	p.E1035	1.000	NULL	pfam_Ankyrin_rpt,pfam_KN_motif,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KANK1	HGNC	ENSG00000107104				108	0	0	47	22	31.8841
SPATA31D1	0	genome.wustl.edu	37	9	84607323	84607323	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	9	84607323	84607323	C	T	SNP	SPATA31D1	ENST00000344803	human	ensembl	74_37	+1	known	silent	c.1938	p.S646	0.000	NULL	NULL	-	no_errors	SPATA31D1	HGNC	ENSG00000214929				75	0	0	28	11	28.2051
ZCCHC6	0	genome.wustl.edu	37	9	88940282	88940282	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	9	88940282	88940282	T	C	SNP	ZCCHC6	ENST00000375963	human	ensembl	74_37	-1	known	missense	c.1756	p.K586E	1.000	pfam_PAP_assoc	pfam_PAP_assoc,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_U1,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC6	HGNC	ENSG00000083223				107	0	0	59	4	6.34921
SPATA31C1	0	genome.wustl.edu	37	9	90535641	90535641	+	RNA	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	9	90535641	90535641	G	A	SNP	SPATA31C1	ENST00000602681	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SPATA31C1	HGNC	ENSG00000230246				187	0	0	99	28	22.0472
SPTLC1	0	genome.wustl.edu	37	9	94809515	94809515	+	Silent	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	9	94809515	94809515	C	T	SNP	SPTLC1	ENST00000262554	human	ensembl	74_37	-1	known	silent	c.1020	p.S340	0.003	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	-	no_errors	SPTLC1	HGNC	ENSG00000090054				93	0	0	36	13	26.5306
DMRT3	0	genome.wustl.edu	37	9	990546	990546	+	Silent	SNP	C	C	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	9	990546	990546	C	A	SNP	DMRT3	ENST00000190165	human	ensembl	74_37	+1	known	silent	c.960	p.S320	1.000	NULL	pfam_DM_DNA-bd,pfam_DMA,superfamily_DM_DNA-bd,superfamily_UBA-like,smart_DM_DNA-bd,pfscan_DM_DNA-bd	-	no_errors	DMRT3	HGNC	ENSG00000064218				83	0	0	33	19	36.5385
MT-ND5	0	genome.wustl.edu	37	MT	13018	13018	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	MT	13018	13018	G	A	SNP	MT-ND5	ENST00000361567	human	ensembl	74_37	+1	known	missense	c.682	p.G228S	NULL	pfam_NADH_UbQ/plastoQ_OxRdtase,tigrfam_NADHpl_OxRdtase_5	pfam_NADH_UbQ/plastoQ_OxRdtase,pfam_NADH_DH_su5_C,pfam_NADH_UbQ_OxRdtase_chain5/L_N,tigrfam_NADHpl_OxRdtase_5	-	no_errors	MT-ND5	HGNC	ENSG00000198786				708	1	0.141044	117	495	80.8824
AMOT	0	genome.wustl.edu	37	X	112054510	112054510	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	X	112054510	112054510	G	A	SNP	AMOT	ENST00000371959	human	ensembl	74_37	-1	known	missense	c.1504	p.R502W	1.000	superfamily_Prefoldin	pfam_Angiomotin_C,superfamily_Prefoldin,prints_Angiomotin	-	no_errors	AMOT	HGNC	ENSG00000126016				199	2	0.995025	79	32	28.8288
GRIA3	0	genome.wustl.edu	37	X	122616765	122616765	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	X	122616765	122616765	C	T	SNP	GRIA3	ENST00000264357	human	ensembl	74_37	+1	known	missense	c.2555	p.A852V	1.000	NULL	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA3	HGNC	ENSG00000125675				111	0	0	55	4	6.77966
ACTRT1	0	genome.wustl.edu	37	X	127185298	127185298	+	Silent	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	X	127185298	127185298	T	C	SNP	ACTRT1	ENST00000371124	human	ensembl	74_37	-1	known	silent	c.888	p.A296	0.997	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTRT1	HGNC	ENSG00000123165				125	0	0	43	24	35.8209
FAM127A	0	genome.wustl.edu	37	X	134167176	134167176	+	RNA	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	X	134167176	134167176	G	A	SNP	FAM127A	ENST00000464369	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FAM127A	HGNC	ENSG00000134590				13	0	0	3	2	40
F9	0	genome.wustl.edu	37	X	138644004	138644004	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	X	138644004	138644004	A	G	SNP	F9	ENST00000218099	human	ensembl	74_37	+1	known	missense	c.1160	p.K387R	0.001	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pirsf_Pept_S1A_FX,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_GLA_domain,pfam_EG-like_dom,superfamily_Trypsin-like_Pept_dom,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Peptidase_S1,pirsf_Pept_S1A_FX,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Peptidase_S1,prints_Peptidase_S1A,prints_GLA_domain	-	no_errors	F9	HGNC	ENSG00000101981				116	0	0	34	22	39.2857
GEMIN8	0	genome.wustl.edu	37	X	14027111	14027111	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	X	14027111	14027111	G	A	SNP	GEMIN8	ENST00000380523	human	ensembl	74_37	-1	known	missense	c.650	p.A217V	0.987	NULL	NULL	-	no_errors	GEMIN8	HGNC	ENSG00000046647				106	0	0	31	23	42.5926
CD99L2	0	genome.wustl.edu	37	X	149983362	149983362	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	X	149983362	149983362	G	A	SNP	CD99L2	ENST00000370377	human	ensembl	74_37	-1	known	missense	c.250	p.R84C	0.002	NULL	pfam_CD99L2	-	no_errors	CD99L2	HGNC	ENSG00000102181				187	0	0	100	6	5.66038
PLXNB3	0	genome.wustl.edu	37	X	153040420	153040420	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	X	153040420	153040420	C	T	SNP	PLXNB3	ENST00000538282	human	ensembl	74_37	+1	known	missense	c.2920	p.R974C	0.001	NULL	pfam_IPT,pfam_Plexin_repeat,superfamily_Ig_E-set,superfamily_Plexin-like_fold,superfamily_Semap_dom,smart_Plexin-like_fold,smart_IPT	-	no_errors	PLXNB3	HGNC	ENSG00000198753				38	0	0	11	8	42.1053
SPRY3	0	genome.wustl.edu	37	X	155003589	155003589	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	X	155003589	155003589	G	A	SNP	SPRY3	ENST00000302805	human	ensembl	74_37	+1	known	missense	c.56	p.R19H	1.000	NULL	pfam_Sprouty	-	no_errors	SPRY3	HGNC	ENSG00000168939				129	0	0	40	25	38.4615
CA5BP1	0	genome.wustl.edu	37	X	15711085	15711085	+	Splice_Site	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	X	15711085	15711085	G	A	SNP	CA5BP1	ENST00000380331	human	ensembl	74_37	+1	known	splice_site	c.NULL	NULL	0.970	-	-	-	no_errors	CA5BP1	HGNC	ENSG00000186312				68	0	0	23	11	32.3529
CDKL5	0	genome.wustl.edu	37	X	18622050	18622050	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	X	18622050	18622050	C	T	SNP	CDKL5	ENST00000379989	human	ensembl	74_37	+1	known	nonsense	c.1006	p.Q336*	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDKL5	HGNC	ENSG00000008086				242	0	0	91	56	38.0952
PPP2R3B	0	genome.wustl.edu	37	X	299553	299553	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	X	299553	299553	T	C	SNP	PPP2R3B	ENST00000390665	human	ensembl	74_37	-1	known	missense	c.1430	p.Y477C	1.000	NULL	pfscan_EF_hand_dom	-	no_errors	PPP2R3B	HGNC	ENSG00000167393				58	0	0	23	11	32.3529
SUV39H1	0	genome.wustl.edu	37	X	48558962	48558962	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	X	48558962	48558962	G	A	SNP	SUV39H1	ENST00000337852	human	ensembl	74_37	+1	known	missense	c.679	p.G227R	1.000	pfam_Pre-SET_dom,smart_Pre-SET_Zn-bd_sub,pirsf_Histone_H3-K9_MeTrfase,pfscan_Pre-SET_dom	pfam_SET_dom,pfam_Pre-SET_dom,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,smart_Post-SET_dom,pirsf_Histone_H3-K9_MeTrfase,pfscan_SET_dom,pfscan_Pre-SET_dom,pfscan_Post-SET_dom,pfscan_Chromo_domain/shadow	-	no_errors	SUV39H1	HGNC	ENSG00000101945				25	0	0	9	8	47.0588
NLGN4X	0	genome.wustl.edu	37	X	5821797	5821797	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	X	5821797	5821797	T	C	SNP	NLGN4X	ENST00000381093	human	ensembl	74_37	-1	known	missense	c.982	p.M328V	1.000	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN4X	HGNC	ENSG00000146938				87	0	0	26	14	35
MED12	0	genome.wustl.edu	37	X	70348474	70348474	+	Silent	SNP	G	G	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	X	70348474	70348474	G	A	SNP	MED12	ENST00000333646	human	ensembl	74_37	+1	known	silent	c.3381	p.S1127	0.966	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12_catenin-bd,pfam_Mediator_Med12	-	no_errors	MED12	HGNC	ENSG00000184634				56	0	0	10	9	47.3684
MED12	0	genome.wustl.edu	37	X	70353001	70353001	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	X	70353001	70353001	A	G	SNP	MED12	ENST00000333646	human	ensembl	74_37	+1	known	missense	c.4556	p.Y1519C	1.000	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12_catenin-bd,pfam_Mediator_Med12	-	no_errors	MED12	HGNC	ENSG00000184634				84	0	0	21	18	46.1538
XIST	0	genome.wustl.edu	37	X	73047637	73047637	+	RNA	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	X	73047637	73047637	C	T	SNP	XIST	ENST00000429829	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	XIST	HGNC	ENSG00000229807				37	0	0	10	3	23.0769
SATL1	0	genome.wustl.edu	37	X	84363304	84363304	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	X	84363304	84363304	C	T	SNP	SATL1	ENST00000509231	human	ensembl	74_37	-1	known	missense	c.671	p.S224N	0.003	NULL	superfamily_Acyl_CoA_acyltransferase	-	no_errors	SATL1	HGNC	ENSG00000184788				90	0	0	51	3	5.55556
CHI3L2	0	genome.wustl.edu	37	1	111781482	111781482	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	111781482	111781482	G	-	DEL	CHI3L2	ENST00000369748	human	ensembl	74_37	+1	known	frame_shift_del	c.846	p.A284fs	0.804	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	-	no_errors	CHI3L2	HGNC	ENSG00000064886				74	0	0	53	13	19.697
PHTF1	0	genome.wustl.edu	37	1	114248545	114248546	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	114248545	114248546	-	A	INS	PHTF1	ENST00000369604	human	ensembl	74_37	-1	known	frame_shift_ins	c.1638_1637	p.M547fs	0.997:1.000	NULL	pfam_TF_homeodomain_male	-	no_errors	PHTF1	HGNC	ENSG00000116793				84	0	0	39	12	23.5294
PIAS3	0	genome.wustl.edu	37	1	145580195	145580195	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	145580195	145580195	T	-	DEL	PIAS3	ENST00000393045	human	ensembl	74_37	+1	known	frame_shift_del	c.677	p.P228fs	1.000	NULL	pfam_Znf_MIZ,smart_SAP_dom,pfscan_Znf_MIZ,pfscan_SAP_dom	-	no_errors	PIAS3	HGNC	ENSG00000131788				125	0	0	114	15	11.6279
ADAMTSL4	0	genome.wustl.edu	37	1	150529494	150529494	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	150529494	150529494	C	-	DEL	ADAMTSL4	ENST00000369039	human	ensembl	74_37	+1	known	frame_shift_del	c.1898	p.P634fs	0.477	NULL	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt	-	no_errors	ADAMTSL4	HGNC	ENSG00000143382				182	0	0	185	30	13.9535
ADAMTSL4	0	genome.wustl.edu	37	1	150530506	150530506	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	150530506	150530506	G	-	DEL	ADAMTSL4	ENST00000369039	human	ensembl	74_37	+1	known	frame_shift_del	c.2332	p.G780fs	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt	-	no_errors	ADAMTSL4	HGNC	ENSG00000143382				30	0	0	41	7	14.5833
PI4KB	0	genome.wustl.edu	37	1	151288877	151288877	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	151288877	151288877	C	-	DEL	PI4KB	ENST00000271657	human	ensembl	74_37	-1	known	frame_shift_del	c.117	p.S40fs	0.871	NULL	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PI4KB	HGNC	ENSG00000143393				49	0	0	65	10	13.3333
ADAR	0	genome.wustl.edu	37	1	154557360	154557360	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	154557360	154557360	T	-	DEL	ADAR	ENST00000292205	human	ensembl	74_37	-1	known	frame_shift_del	c.3732	p.G1245fs	0.093	pfam_A_deamin,smart_A_deamin,pfscan_A_deamin	pfam_A_deamin,pfam_dsRNA_A_deaminase,pfam_dsRNA-bd_dom,smart_dsRNA_A_deaminase,smart_dsRNA-bd_dom,smart_A_deamin,pfscan_dsRNA-bd_dom,pfscan_dsRNA_A_deaminase,pfscan_A_deamin	-	no_errors	ADAR	HGNC	ENSG00000160710				95	0	0	85	12	12.3711
ASH1L	0	genome.wustl.edu	37	1	155449753	155449753	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	155449753	155449753	T	-	DEL	ASH1L	ENST00000368346	human	ensembl	74_37	-1	known	frame_shift_del	c.2908	p.I970fs	1.000	NULL	pfam_SET_dom,pfam_BAH_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_AT_hook_DNA-bd_motif,smart_AWS,smart_SET_dom,smart_Bromodomain,smart_Znf_PHD,smart_BAH_dom,pfscan_AWS,pfscan_BAH_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Bromodomain	-	no_errors	ASH1L	HGNC	ENSG00000116539				86	0	0	99	15	13.1579
ASH1L	0	genome.wustl.edu	37	1	155450116	155450116	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	155450116	155450116	T	-	DEL	ASH1L	ENST00000368346	human	ensembl	74_37	-1	known	frame_shift_del	c.2545	p.I849fs	1.000	NULL	pfam_SET_dom,pfam_BAH_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_AT_hook_DNA-bd_motif,smart_AWS,smart_SET_dom,smart_Bromodomain,smart_Znf_PHD,smart_BAH_dom,pfscan_AWS,pfscan_BAH_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Bromodomain	-	no_errors	ASH1L	HGNC	ENSG00000116539				161	0	0	101	14	12.1739
COPA	0	genome.wustl.edu	37	1	160295427	160295427	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	160295427	160295427	T	-	DEL	COPA	ENST00000368069	human	ensembl	74_37	-1	known	frame_shift_del	c.512	p.N171fs	1.000	superfamily_WD40_repeat_dom,pirsf_Coatomer_asu,pfscan_WD40_repeat_dom	pfam_Coatomer_asu_C,pfam_Coatomer_WD-assoc_reg,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Coatomer_asu,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	COPA	HGNC	ENSG00000122218				87	0	0	110	12	9.83607
ENSG00000228863	0	genome.wustl.edu	37	1	160640798	160640798	+	RNA	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	160640798	160640798	T	-	DEL	ENSG00000228863	ENST00000598917	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.983	-	-	-	no_errors	RP11-404F10.2	Clone_based_vega_gene	ENSG00000228863				21	0	0	17	7	29.1667
NUF2	0	genome.wustl.edu	37	1	163306561	163306561	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	163306561	163306561	T	-	DEL	NUF2	ENST00000271452	human	ensembl	74_37	+1	known	frame_shift_del	c.358	p.L121fs	0.996	pfam_Kinetochore_Nuf2	pfam_Kinetochore_Nuf2	-	no_errors	NUF2	HGNC	ENSG00000143228				74	0	0	70	5	6.66667
GPR161	0	genome.wustl.edu	37	1	168054869	168054869	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	168054869	168054869	C	-	DEL	GPR161	ENST00000537209	human	ensembl	74_37	-1	known	frame_shift_del	c.1550	p.G517fs	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR161	HGNC	ENSG00000143147				64	0	0	69	12	14.8148
F5	0	genome.wustl.edu	37	1	169494110	169494112	+	In_Frame_Del	DEL	ATG	ATG	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	ATG	ATG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	169494110	169494112	ATG	-	DEL	F5	ENST00000367797	human	ensembl	74_37	-1	known	in_frame_del	c.5753_5751	p.I1918in_frame_del	0.995:0.965:0.198	superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F5	HGNC	ENSG00000198734				83	0	0	65	7	9.72222
PADI3	0	genome.wustl.edu	37	1	17607262	17607262	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	17607262	17607262	A	-	DEL	PADI3	ENST00000375460	human	ensembl	74_37	+1	known	frame_shift_del	c.1732	p.A580fs	0.723	pfam_PAD_C,pirsf_Protein-arginine_deiminase_sub	pfam_PAD_C,pfam_Prot_Arg_deaminase_cen_dom,pfam_PAD_N,superfamily_Prot_Arg_deaminase_cen_dom,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	-	no_errors	PADI3	HGNC	ENSG00000142619				121	0	0	66	14	17.5
PADI4	0	genome.wustl.edu	37	1	17666222	17666222	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	17666222	17666222	C	-	DEL	PADI4	ENST00000375448	human	ensembl	74_37	+1	known	frame_shift_del	c.566	p.K191fs	0.379	pfam_Prot_Arg_deaminase_cen_dom,superfamily_Prot_Arg_deaminase_cen_dom,pirsf_Protein-arginine_deiminase_sub	pfam_PAD_C,pfam_Prot_Arg_deaminase_cen_dom,pfam_PAD_N,superfamily_Prot_Arg_deaminase_cen_dom,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	-	no_errors	PADI4	HGNC	ENSG00000159339				62	0	0	32	7	17.9487
NCF2	0	genome.wustl.edu	37	1	183533152	183533152	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	183533152	183533152	T	-	DEL	NCF2	ENST00000367535	human	ensembl	74_37	-1	known	frame_shift_del	c.1014	p.E339fs	0.999	superfamily_SH3_domain	pfam_SH3_domain,pfam_SH3_2,pfam_TPR_1,pfam_OPR_PB1,superfamily_SH3_domain,smart_TPR_repeat,smart_SH3_domain,smart_OPR_PB1,pfscan_SH3_domain,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_p67phox,prints_SH3_domain	-	no_errors	NCF2	HGNC	ENSG00000116701				242	0	0	232	26	10.0775
RGL1	0	genome.wustl.edu	37	1	183857685	183857685	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	183857685	183857685	A	-	DEL	RGL1	ENST00000304685	human	ensembl	74_37	+1	known	frame_shift_del	c.1134	p.K380fs	0.998	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_Ras-assoc,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RGL1	HGNC	ENSG00000143344				128	0	0	117	11	8.59375
UBR4	0	genome.wustl.edu	37	1	19467923	19467923	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	19467923	19467923	G	-	DEL	UBR4	ENST00000375267	human	ensembl	74_37	-1	known	frame_shift_del	c.8406	p.M2803fs	0.484	superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481				52	0	0	31	9	22.5
TMCO4	0	genome.wustl.edu	37	1	20066382	20066382	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	20066382	20066382	C	-	DEL	TMCO4	ENST00000294543	human	ensembl	74_37	-1	known	frame_shift_del	c.1114	p.V372fs	0.999	pfam_DUF726,pfam_DUF900_hydrolase	pfam_DUF726,pfam_DUF900_hydrolase	-	no_errors	TMCO4	HGNC	ENSG00000162542				37	0	0	30	10	25
CACNA1S	0	genome.wustl.edu	37	1	201079310	201079312	+	In_Frame_Del	DEL	GTT	GTT	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	GTT	GTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	201079310	201079312	GTT	-	DEL	CACNA1S	ENST00000362061	human	ensembl	74_37	-1	known	in_frame_del	c.240_238	p.N80in_frame_del	0.996:1.000:1.000	prints_VDCC_L_a1su	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_VDCC_L_a1ssu	-	no_errors	CACNA1S	HGNC	ENSG00000081248				70	0	0	75	12	13.7931
GOLT1A	0	genome.wustl.edu	37	1	204172078	204172080	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	204172078	204172080	GAA	-	DEL	GOLT1A	ENST00000308302	human	ensembl	74_37	-1	known	in_frame_del	c.63_61	p.F21in_frame_del	1.000:1.000:1.000	pfam_Vesicle_transpt_Got1/SFT2	pfam_Vesicle_transpt_Got1/SFT2	-	no_errors	GOLT1A	HGNC	ENSG00000174567				66	0	0	74	4	5.12821
CR2	0	genome.wustl.edu	37	1	207642044	207642044	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	207642044	207642044	C	-	DEL	CR2	ENST00000367057	human	ensembl	74_37	+1	known	frame_shift_del	c.618	p.T209fs	0.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR2	HGNC	ENSG00000117322				146	0	0	154	24	13.4831
TMEM206	0	genome.wustl.edu	37	1	212548597	212548597	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	212548597	212548597	T	-	DEL	TMEM206	ENST00000535273	human	ensembl	74_37	-1	known	frame_shift_del	c.1012	p.S338fs	0.016	NULL	NULL	-	no_errors	TMEM206	HGNC	ENSG00000065600				70	0	0	48	11	18.6441
MIA3	0	genome.wustl.edu	37	1	222832843	222832844	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	222832843	222832844	-	T	INS	MIA3	ENST00000344441	human	ensembl	74_37	+1	known	frame_shift_ins	c.4758_4759	p.K1587fs	0.667:0.998	NULL	pfam_SH3_2,superfamily_SH3_domain	-	no_errors	MIA3	HGNC	ENSG00000154305				74	0	0	98	13	11.7117
SLC35F3	0	genome.wustl.edu	37	1	234444893	234444893	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	234444893	234444893	T	-	DEL	SLC35F3	ENST00000366617	human	ensembl	74_37	+1	known	frame_shift_del	c.448	p.F151fs	1.000	NULL	pfam_DMT,pfam_Tpt_PEP_trans_dom,pfam_SLC35_F1/F2/F6	-	no_errors	SLC35F3	HGNC	ENSG00000183780				50	0	0	56	10	15.1515
ARID4B	0	genome.wustl.edu	37	1	235345419	235345419	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	235345419	235345419	T	-	DEL	ARID4B	ENST00000264183	human	ensembl	74_37	-1	known	frame_shift_del	c.2815	p.T939fs	1.000	NULL	pfam_RBB1NT,pfam_ARID/BRIGHT_DNA-bd,pfam_Tudor-knot,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Chromodomain-like,smart_Tudor,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID4B	HGNC	ENSG00000054267				80	0	0	70	7	9.09091
RYR2	0	genome.wustl.edu	37	1	237969494	237969494	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	237969494	237969494	T	-	DEL	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	frame_shift_del	c.14227	p.F4745fs	1.000	pfam_Ion_trans_dom	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626				42	0	0	43	10	18.8679
CHRM3	0	genome.wustl.edu	37	1	240072444	240072444	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	240072444	240072444	A	-	DEL	CHRM3	ENST00000255380	human	ensembl	74_37	+1	known	frame_shift_del	c.1693	p.K567fs	1.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Musac_Ach_M3_rcpt,prints_Musac_Ach_rcpt,prints_GPCR_Rhodpsn	-	no_errors	CHRM3	HGNC	ENSG00000133019				42	0	0	66	7	9.58904
PGBD2	0	genome.wustl.edu	37	1	249211828	249211828	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	249211828	249211828	T	-	DEL	PGBD2	ENST00000329291	human	ensembl	74_37	+1	known	frame_shift_del	c.1045	p.F350fs	0.994	NULL	NULL	-	no_errors	PGBD2	HGNC	ENSG00000185220				143	0	0	130	23	15.0327
GRIK3	0	genome.wustl.edu	37	1	37346390	37346391	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	37346390	37346391	-	G	INS	GRIK3	ENST00000373091	human	ensembl	74_37	-1	known	frame_shift_ins	c.395_394	p.H132fs	1.000:1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK3	HGNC	ENSG00000163873				55	0	0	37	5	11.9048
ZMPSTE24	0	genome.wustl.edu	37	1	40724004	40724004	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	40724004	40724004	G	-	DEL	ZMPSTE24	ENST00000372759	human	ensembl	74_37	+1	known	frame_shift_del	c.61	p.A22fs	1.000	NULL	pfam_Peptidase_M48	-	no_errors	ZMPSTE24	HGNC	ENSG00000084073				56	0	0	27	8	22.8571
SMAP2	0	genome.wustl.edu	37	1	40878734	40878734	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	40878734	40878734	A	-	DEL	SMAP2	ENST00000372718	human	ensembl	74_37	+1	known	frame_shift_del	c.449	p.K152fs	1.000	NULL	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	SMAP2	HGNC	ENSG00000084070				69	0	0	48	7	12.7273
NASP	0	genome.wustl.edu	37	1	46073055	46073055	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	46073055	46073055	A	-	DEL	NASP	ENST00000402363	human	ensembl	74_37	+1	known	frame_shift_del	c.478	p.T162fs	0.999	NULL	pfam_Tetratricopeptide_SHNi-TPR_dom,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	NASP	HGNC	ENSG00000132780				76	0	0	57	9	13.6364
ZCCHC11	0	genome.wustl.edu	37	1	52991780	52991780	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	52991780	52991780	T	-	DEL	ZCCHC11	ENST00000257177	human	ensembl	74_37	-1	known	frame_shift_del	c.173	p.N58fs	0.998	NULL	pfam_PAP_assoc,pfam_Znf_CCHC,pfam_Nucleotidyltransferase,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC11	HGNC	ENSG00000134744				72	0	0	34	10	22.7273
C1orf168	0	genome.wustl.edu	37	1	57258099	57258099	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	57258099	57258099	T	-	DEL	C1orf168	ENST00000343433	human	ensembl	74_37	-1	known	frame_shift_del	c.387	p.V130fs	0.012	NULL	superfamily_SH3_domain	-	no_errors	C1orf168	HGNC	ENSG00000187889				151	0	0	79	22	21.7822
RPL22	0	genome.wustl.edu	37	1	6257785	6257785	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	6257785	6257785	T	-	DEL	RPL22	ENST00000234875	human	ensembl	74_37	-1	known	frame_shift_del	c.44	p.K15fs	1.000	pfam_Ribosomal_L22e	pfam_Ribosomal_L22e	-	no_errors	RPL22	HGNC	ENSG00000116251				42	0	0	18	9	33.3333
SGIP1	0	genome.wustl.edu	37	1	67099769	67099769	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	67099769	67099769	A	-	DEL	SGIP1	ENST00000237247	human	ensembl	74_37	+1	known	frame_shift_del	c.106	p.K38fs	0.997	NULL	pfam_Muniscin_C-term_mu_dom,pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C	-	no_errors	SGIP1	HGNC	ENSG00000118473				19	0	0	17	7	29.1667
FPGT	0	genome.wustl.edu	37	1	74670596	74670597	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	74670596	74670597	-	A	INS	FPGT	ENST00000370898	human	ensembl	74_37	+1	known	frame_shift_ins	c.904_905	p.I304fs	0.995:0.991	pfam_Fucokinase,pirsf_Fucose-1-phosphate_GuaTrfase	pfam_Fucokinase,superfamily_Trimer_LpxA-like,pirsf_Fucose-1-phosphate_GuaTrfase	-	no_errors	FPGT	HGNC	ENSG00000254685				48	0	0	16	7	30.4348
USP33	0	genome.wustl.edu	37	1	78204970	78204970	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	1	78204970	78204970	T	-	DEL	USP33	ENST00000357428	human	ensembl	74_37	-1	known	frame_shift_del	c.424	p.I142fs	0.882	NULL	pfam_Peptidase_C19/C67,pfam_Pept_C19_DUSP,pfam_Znf_UBP,smart_Znf_UBP,smart_Pept_C19_DUSP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP33	HGNC	ENSG00000077254				155	0	0	74	24	24.4898
ADD3	0	genome.wustl.edu	37	10	111893350	111893350	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	10	111893350	111893350	A	-	DEL	ADD3	ENST00000356080	human	ensembl	74_37	+1	known	frame_shift_del	c.2095	p.K701fs	1.000	NULL	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	-	no_errors	ADD3	HGNC	ENSG00000148700				120	1	0.826446	80	12	13.0435
STAM	0	genome.wustl.edu	37	10	17735288	17735290	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	10	17735288	17735290	AAG	-	DEL	STAM	ENST00000377524	human	ensembl	74_37	+1	known	in_frame_del	c.512_514	p.E174in_frame_del	1.000:1.000:1.000	pfam_Ubiquitin-int_motif,pfscan_Ubiquitin-int_motif	pfam_VHS,pfam_SH3_domain,pfam_SH3_2,pfam_Ubiquitin-int_motif,superfamily_ENTH_VHS,superfamily_SH3_domain,smart_VHS_subgr,smart_SH3_domain,pfscan_SH3_domain,pfscan_Ubiquitin-int_motif,pfscan_VHS,prints_SH3_domain,prints_p67phox	-	no_errors	STAM	HGNC	ENSG00000136738				99	0	0	62	11	15.0685
AKR1E2	0	genome.wustl.edu	37	10	4889684	4889684	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	10	4889684	4889684	A	-	DEL	AKR1E2	ENST00000298375	human	ensembl	74_37	+1	known	frame_shift_del	c.925	p.N310fs	0.017	superfamily_NADP_OxRdtase_dom	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	-	no_errors	AKR1E2	HGNC	ENSG00000165568				92	0	0	48	16	25
MICU1	0	genome.wustl.edu	37	10	74267946	74267946	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	10	74267946	74267946	A	-	DEL	MICU1	ENST00000398761	human	ensembl	74_37	-1	known	frame_shift_del	c.625	p.S209fs	1.000	NULL	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	MICU1	HGNC	ENSG00000107745				20	0	0	9	4	30.7692
NDST2	0	genome.wustl.edu	37	10	75567575	75567575	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	10	75567575	75567575	A	-	DEL	NDST2	ENST00000309979	human	ensembl	74_37	-1	known	frame_shift_del	c.572	p.L191fs	1.000	pfam_Heparan_SO4_deacetylase	pfam_Heparan_SO4_deacetylase,pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	NDST2	HGNC	ENSG00000166507				50	0	0	29	5	14.7059
FAM35A	0	genome.wustl.edu	37	10	88950340	88950340	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	10	88950340	88950340	T	-	DEL	FAM35A	ENST00000298786	human	ensembl	74_37	+1	known	frame_shift_del	c.2615	p.F873fs	0.697	NULL	NULL	-	no_errors	FAM35A	HGNC	ENSG00000122376				120	0	0	72	17	19.1011
LARP4B	0	genome.wustl.edu	37	10	890939	890939	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	10	890939	890939	T	-	DEL	LARP4B	ENST00000316157	human	ensembl	74_37	-1	known	frame_shift_del	c.487	p.T163fs	1.000	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP4B	HGNC	ENSG00000107929				80	0	0	51	9	15
PTEN	0	genome.wustl.edu	37	10	89717770	89717770	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	10	89717770	89717770	A	-	DEL	PTEN	ENST00000371953	human	ensembl	74_37	+1	known	frame_shift_del	c.795	p.K267fs	0.994	pfam_Tensin_phosphatase_C2-dom,superfamily_C2_dom,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tensin_phosphatase_C2-dom	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_dom,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862				58	0	0	38	12	24
STAMBPL1	0	genome.wustl.edu	37	10	90682146	90682146	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	10	90682146	90682146	A	-	DEL	STAMBPL1	ENST00000371927	human	ensembl	74_37	+1	known	frame_shift_del	c.1207	p.K405fs	1.000	NULL	pfam_JAB_MPN_dom,smart_JAB_MPN_dom	-	no_errors	STAMBPL1	HGNC	ENSG00000138134				80	0	0	51	17	25
ZNF518A	0	genome.wustl.edu	37	10	97918856	97918856	+	RNA	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	10	97918856	97918856	A	-	DEL	ZNF518A	ENST00000316045	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.867	-	-	-	no_errors	ZNF518A	HGNC	ENSG00000177853				57	0	0	27	12	30.7692
MSANTD4	0	genome.wustl.edu	37	11	105880356	105880356	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	105880356	105880356	A	-	DEL	MSANTD4	ENST00000301919	human	ensembl	74_37	-1	known	frame_shift_del	c.944	p.L315fs	1.000	NULL	NULL	-	no_errors	MSANTD4	HGNC	ENSG00000170903				99	0	0	87	11	11.2245
CLDN25	0	genome.wustl.edu	37	11	113650551	113650551	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	113650551	113650551	G	-	DEL	CLDN25	ENST00000453129	human	ensembl	74_37	+1	known	frame_shift_del	c.34	p.L14fs	0.952	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin	-	no_errors	CLDN25	HGNC	ENSG00000228607				102	0	0	73	38	34.2342
CD3G	0	genome.wustl.edu	37	11	118220583	118220583	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	118220583	118220583	A	-	DEL	CD3G	ENST00000532917	human	ensembl	74_37	+1	known	frame_shift_del	c.205	p.K71fs	0.000	smart_Ig_sub2	pfam_Phos_immunorcpt_sig_ITAM,smart_Ig_sub2,smart_Phos_immunorcpt_sig_ITAM,pfscan_Phos_immunorcpt_sig_ITAM	-	no_errors	CD3G	HGNC	ENSG00000160654				56	0	0	58	8	12.1212
DDX6	0	genome.wustl.edu	37	11	118629613	118629614	+	Splice_Site	INS	-	-	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	118629613	118629614	-	G	INS	DDX6	ENST00000264018	human	ensembl	74_37	-1	known	splice_site_ins	c.865-3_865-2	e8-2	1.000:0.856	-	-	-	no_errors	DDX6	HGNC	ENSG00000110367				120	0	0	95	33	25.7812
C1QTNF5	0	genome.wustl.edu	37	11	119210189	119210190	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	119210189	119210190	-	C	INS	C1QTNF5	ENST00000445041	human	ensembl	74_37	-1	known	frame_shift_ins	c.584_583	p.A195fs	1.000:0.976	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF5	HGNC	ENSG00000223953				34	0	0	34	4	10.5263
MICALCL	0	genome.wustl.edu	37	11	12315879	12315879	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	12315879	12315879	A	-	DEL	MICALCL	ENST00000256186	human	ensembl	74_37	+1	known	frame_shift_del	c.901	p.T302fs	0.006	NULL	pfam_DUF3585,smart_ProQ/FinO	-	no_errors	MICALCL	HGNC	ENSG00000133808				133	0	0	90	33	26.8293
THYN1	0	genome.wustl.edu	37	11	134118753	134118753	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	134118753	134118753	T	-	DEL	THYN1	ENST00000341541	human	ensembl	74_37	-1	known	frame_shift_del	c.581	p.N194fs	0.971	pfam_EVE_domain,superfamily_PUA-like_domain	pfam_EVE_domain,superfamily_PUA-like_domain	-	no_errors	THYN1	HGNC	ENSG00000151500				75	0	0	54	13	19.403
SLC6A5	0	genome.wustl.edu	37	11	20676319	20676319	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	20676319	20676319	G	-	DEL	SLC6A5	ENST00000525748	human	ensembl	74_37	+1	known	frame_shift_del	c.2299	p.E768fs	1.000	NULL	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A5	HGNC	ENSG00000165970				107	0	0	59	25	29.7619
LGR4	0	genome.wustl.edu	37	11	27401816	27401817	+	Splice_Site	DEL	AC	AC	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	27401816	27401817	AC	-	DEL	LGR4	ENST00000379214	human	ensembl	74_37	-1	known	splice_site_del	c.971+1_971+1	e10+1	1.000:1.000	-	-	-	no_errors	LGR4	HGNC	ENSG00000205213				148	0	0	107	16	13.0081
PAX6	0	genome.wustl.edu	37	11	31812317	31812317	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	31812317	31812317	G	-	DEL	PAX6	ENST00000379107	human	ensembl	74_37	-1	known	frame_shift_del	c.1166	p.P389fs	1.000	NULL	pfam_Paired_dom,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Paired_dom,smart_Homeobox_dom,prints_Paired_dom,pfscan_Homeobox_dom,pfscan_Paired_dom	-	no_errors	PAX6	HGNC	ENSG00000007372				56	0	0	43	13	23.2143
QSER1	0	genome.wustl.edu	37	11	32997895	32997895	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	32997895	32997895	A	-	DEL	QSER1	ENST00000399302	human	ensembl	74_37	+1	known	frame_shift_del	c.5083	p.N1697fs	1.000	NULL	NULL	-	no_errors	QSER1	HGNC	ENSG00000060749				46	0	0	26	34	56.6667
B4GALNT4	0	genome.wustl.edu	37	11	372694	372695	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	372694	372695	-	G	INS	B4GALNT4	ENST00000329962	human	ensembl	74_37	+1	known	frame_shift_ins	c.288_289	p.A98fs	0.001:0.000	NULL	pfam_Chond_GalNAc,pfam_PA14,smart_PA14	-	no_errors	B4GALNT4	HGNC	ENSG00000182272				11	0	0	13	5	27.7778
TRIM51HP	0	genome.wustl.edu	37	11	55065031	55065032	+	RNA	INS	-	-	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	55065031	55065032	-	T	INS	TRIM51HP	ENST00000526016	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.009:0.010	-	-	-	no_errors	TRIM51HP	HGNC	ENSG00000166007				63	0	0	35	10	22.2222
OR4P4	0	genome.wustl.edu	37	11	55406142	55406142	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	55406142	55406142	T	-	DEL	OR4P4	ENST00000314612	human	ensembl	74_37	+1	known	frame_shift_del	c.309	p.F105fs	0.097	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4P4	HGNC	ENSG00000181927				137	0	0	89	15	14.4231
TRIM51	0	genome.wustl.edu	37	11	55653610	55653610	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	55653610	55653610	A	-	DEL	TRIM51	ENST00000449290	human	ensembl	74_37	+1	known	frame_shift_del	c.423	p.M144fs	0.001	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM51	HGNC	ENSG00000124900				45	0	0	34	9	20.9302
MS4A10	0	genome.wustl.edu	37	11	60558552	60558553	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	60558552	60558553	-	G	INS	MS4A10	ENST00000308287	human	ensembl	74_37	+1	known	frame_shift_ins	c.289_290	p.A99fs	1.000:1.000	pfam_CD20-like	pfam_CD20-like	-	no_errors	MS4A10	HGNC	ENSG00000172689				62	0	0	54	5	8.47458
SLC3A2	0	genome.wustl.edu	37	11	62649529	62649529	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	62649529	62649529	A	-	DEL	SLC3A2	ENST00000377892	human	ensembl	74_37	+1	known	frame_shift_del	c.985	p.K331fs	1.000	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	-	no_errors	SLC3A2	HGNC	ENSG00000168003				101	0	0	63	20	24.0964
RAB1B	0	genome.wustl.edu	37	11	66039887	66039888	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	66039887	66039888	-	G	INS	RAB1B	ENST00000311481	human	ensembl	74_37	+1	known	frame_shift_ins	c.235_236	p.A81fs	1.000:1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_EF_GTP-bd_dom,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_EF_GTP-bd_dom,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB1B	HGNC	ENSG00000174903				45	0	0	28	11	28.2051
ANO1	0	genome.wustl.edu	37	11	70013392	70013393	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	70013392	70013393	-	C	INS	ANO1	ENST00000355303	human	ensembl	74_37	+1	known	frame_shift_ins	c.2096_2097	p.D702fs	0.016:0.004	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO1	HGNC	ENSG00000131620				46	0	0	27	6	18.1818
INPPL1	0	genome.wustl.edu	37	11	71948209	71948209	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	71948209	71948209	C	-	DEL	INPPL1	ENST00000298229	human	ensembl	74_37	+1	known	frame_shift_del	c.2921	p.P976fs	0.066	NULL	pfam_Endo/exonuclease/phosphatase,pfam_SH2,pfam_SAM_2,pfam_SAM_type1,superfamily_Endo/exonuclease/phosphatase,superfamily_SAM/pointed,smart_SH2,smart_IPPc,smart_SAM,pfscan_SAM,pfscan_SH2,prints_SH2	-	no_errors	INPPL1	HGNC	ENSG00000165458				45	0	0	45	6	11.7647
INTS4	0	genome.wustl.edu	37	11	77633436	77633436	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	77633436	77633436	A	-	DEL	INTS4	ENST00000534064	human	ensembl	74_37	-1	known	frame_shift_del	c.1596	p.F532fs	1.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	INTS4	HGNC	ENSG00000149262				43	0	0	22	3	12
CCDC90B	0	genome.wustl.edu	37	11	82984691	82984691	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	82984691	82984691	T	-	DEL	CCDC90B	ENST00000529689	human	ensembl	74_37	-1	known	frame_shift_del	c.593	p.K198fs	1.000	pfam_DUF1640	pfam_DUF1640	-	no_errors	CCDC90B	HGNC	ENSG00000137500				52	0	0	20	11	35.4839
KDM4D	0	genome.wustl.edu	37	11	94731303	94731303	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	11	94731303	94731303	A	-	DEL	KDM4D	ENST00000335080	human	ensembl	74_37	+1	known	frame_shift_del	c.767	p.N257fs	0.020	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,pfam_TF_JmjN,smart_TF_JmjN,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4D	HGNC	ENSG00000186280				49	0	0	35	16	31.3725
GNPTAB	0	genome.wustl.edu	37	12	102158446	102158446	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	102158446	102158446	T	-	DEL	GNPTAB	ENST00000299314	human	ensembl	74_37	-1	known	frame_shift_del	c.2249	p.N750fs	0.000	pfam_DMAP1-bd	pfam_DMAP1-bd,pfam_Notch_dom,pfam_DUF3184,superfamily_Notch_dom,smart_Notch_dom,pfscan_EF_hand_dom,pfscan_Notch_dom	-	no_errors	GNPTAB	HGNC	ENSG00000111670				58	0	0	38	8	17.3913
MTERFD3	0	genome.wustl.edu	37	12	107371383	107371383	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	107371383	107371383	T	-	DEL	MTERFD3	ENST00000240050	human	ensembl	74_37	-1	known	frame_shift_del	c.1110	p.V371fs	1.000	NULL	pfam_Mit_transcrip_term-rel,smart_Mit_transcrip_term-rel	-	no_errors	MTERFD3	HGNC	ENSG00000120832				75	0	0	51	11	17.7419
PLBD2	0	genome.wustl.edu	37	12	113824823	113824823	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	113824823	113824823	C	-	DEL	PLBD2	ENST00000280800	human	ensembl	74_37	+1	known	frame_shift_del	c.1368	p.R458fs	0.980	pfam_PLipase_B-like	pfam_PLipase_B-like	-	no_errors	PLBD2	HGNC	ENSG00000151176				58	0	0	36	6	14.2857
FBXO21	0	genome.wustl.edu	37	12	117624320	117624320	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	117624320	117624320	A	-	DEL	FBXO21	ENST00000330622	human	ensembl	74_37	-1	known	frame_shift_del	c.432	p.F144fs	1.000	superfamily_F-box_dom	pfam_Hemimethylated_DNA-bd_dom,superfamily_Hemimethylated_DNA-bd_dom,superfamily_F-box_dom,tigrfam_Hemimethylated_DNA-bd_dom	-	no_errors	FBXO21	HGNC	ENSG00000135108				68	0	0	39	8	17.0213
KNTC1	0	genome.wustl.edu	37	12	123087620	123087620	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	123087620	123087620	A	-	DEL	KNTC1	ENST00000333479	human	ensembl	74_37	+1	known	frame_shift_del	c.4931	p.K1646fs	1.000	pfam_RZZ-complex_KNTC1/ROD_C	pfam_RZZ-complex_KNTC1/ROD_C,superfamily_Quino_amine_DH_bsu,superfamily_WD40_repeat_dom,superfamily_PAH	-	no_errors	KNTC1	HGNC	ENSG00000184445				61	0	0	36	8	18.1818
PLEKHA5	0	genome.wustl.edu	37	12	19427544	19427545	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	19427544	19427545	-	A	INS	PLEKHA5	ENST00000317589	human	ensembl	74_37	+1	known	frame_shift_ins	c.922_923	p.N310fs	1.000:1.000	NULL	pfam_Pleckstrin_homology,superfamily_WW_dom,smart_WW_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_WW_dom	-	no_errors	PLEKHA5	HGNC	ENSG00000052126				75	0	0	30	6	16.6667
ITPR2	0	genome.wustl.edu	37	12	26640045	26640046	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	26640045	26640046	-	T	INS	ITPR2	ENST00000381340	human	ensembl	74_37	-1	known	frame_shift_ins	c.5510_5509	p.R1837fs	0.999:1.000	superfamily_ARM-type_fold	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR2	HGNC	ENSG00000123104				126	0	0	68	8	10.5263
KMT2D	0	genome.wustl.edu	37	12	49434936	49434936	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	49434936	49434936	G	-	DEL	KMT2D	ENST00000301067	human	ensembl	74_37	-1	known	frame_shift_del	c.6617	p.P2206fs	0.843	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2D	HGNC	ENSG00000167548				10	0	0	6	3	33.3333
FAM186B	0	genome.wustl.edu	37	12	49981464	49981464	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	49981464	49981464	T	-	DEL	FAM186B	ENST00000257894	human	ensembl	74_37	-1	known	frame_shift_del	c.2606	p.K869fs	1.000	NULL	NULL	-	no_errors	FAM186B	HGNC	ENSG00000135436				32	0	0	28	4	12.5
CBX5	0	genome.wustl.edu	37	12	54645832	54645832	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	54645832	54645832	T	-	DEL	CBX5	ENST00000209875	human	ensembl	74_37	-1	known	frame_shift_del	c.317	p.K106fs	1.000	superfamily_Chromodomain-like	pfam_Chromo_shadow_dom,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Chromo_shadow_dom,pfscan_Chromo_domain/shadow,prints_Chromo_dom_subgr	-	no_errors	CBX5	HGNC	ENSG00000094916				175	0	0	91	20	18.018
DGKA	0	genome.wustl.edu	37	12	56347513	56347514	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	56347513	56347514	-	C	INS	DGKA	ENST00000331886	human	ensembl	74_37	+1	known	frame_shift_ins	c.2169_2170	p.R725fs	0.158:0.749	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_EF_hand_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_EF_hand_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKA	HGNC	ENSG00000065357				54	0	0	35	8	18.6047
MYO1A	0	genome.wustl.edu	37	12	57422573	57422573	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	57422573	57422573	T	-	DEL	MYO1A	ENST00000300119	human	ensembl	74_37	-1	known	frame_shift_del	c.3098	p.K1033fs	1.000	pfam_Myosin_tail_2	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYO1A	HGNC	ENSG00000166866				110	0	0	54	15	21.7391
GNS	0	genome.wustl.edu	37	12	65141513	65141513	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	65141513	65141513	A	-	DEL	GNS	ENST00000258145	human	ensembl	74_37	-1	known	frame_shift_del	c.438	p.F146fs	1.000	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core,pirsf_GlcNAc_6-SO4ase	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core,pirsf_GlcNAc_6-SO4ase	-	no_errors	GNS	HGNC	ENSG00000135677				52	0	0	32	9	21.9512
TMBIM4	0	genome.wustl.edu	37	12	66539677	66539677	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	66539677	66539677	A	-	DEL	TMBIM4	ENST00000358230	human	ensembl	74_37	-1	known	frame_shift_del	c.408	p.F136fs	1.000	pfam_Bax_inhibitor_1-related	pfam_Bax_inhibitor_1-related	-	no_errors	TMBIM4	HGNC	ENSG00000155957				47	0	0	28	11	28.2051
YEATS4	0	genome.wustl.edu	37	12	69784045	69784045	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	69784045	69784045	A	-	DEL	YEATS4	ENST00000247843	human	ensembl	74_37	+1	known	frame_shift_del	c.633	p.N213fs	1.000	NULL	pfam_YEATS,pfscan_YEATS	-	no_errors	YEATS4	HGNC	ENSG00000127337				69	0	0	38	14	26.9231
MYF6	0	genome.wustl.edu	37	12	81101546	81101547	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	81101546	81101547	-	G	INS	MYF6	ENST00000228641	human	ensembl	74_37	+1	known	frame_shift_ins	c.48_49	p.E17fs	0.689:1.000	pfam_Basic,smart_Basic	pfam_Basic,pfam_bHLH_dom,superfamily_bHLH_dom,smart_Basic,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MYF6	HGNC	ENSG00000111046				54	0	0	37	8	17.7778
ELK3	0	genome.wustl.edu	37	12	96641028	96641029	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	12	96641028	96641029	-	C	INS	ELK3	ENST00000228741	human	ensembl	74_37	+1	known	frame_shift_ins	c.518_519	p.V176fs	0.017:0.019	NULL	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ELK3	HGNC	ENSG00000111145				23	0	0	21	6	22.2222
LIG4	0	genome.wustl.edu	37	13	108862142	108862142	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	13	108862142	108862142	G	-	DEL	LIG4	ENST00000356922	human	ensembl	74_37	-1	known	frame_shift_del	c.1475	p.P492fs	0.545	pfam_DNA_ligase_ATP-dep_C,superfamily_NA-bd_OB-fold,tigrfam_DNA_ligase_ATP-dep	pfam_DNA_ligase_ATP-dep_cent,pfam_DNA_ligase_ATP-dep_N,pfam_DNA_ligase_IV,pfam_BRCT_dom,pfam_DNA_ligase_ATP-dep_C,superfamily_NA-bd_OB-fold,superfamily_BRCT_dom,superfamily_DNA_ligase_ATP-dep_N,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_DNA_ligase_ATP-dep_cent,tigrfam_DNA_ligase_ATP-dep	-	no_errors	LIG4	HGNC	ENSG00000174405				193	0	0	112	13	10.4
CAB39L	0	genome.wustl.edu	37	13	49906086	49906086	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	13	49906086	49906086	A	-	DEL	CAB39L	ENST00000347776	human	ensembl	74_37	-1	known	frame_shift_del	c.831	p.F277fs	1.000	pfam_Mo25,superfamily_ARM-type_fold	pfam_Mo25,superfamily_ARM-type_fold	-	no_errors	CAB39L	HGNC	ENSG00000102547				138	0	0	92	28	23.3333
KPNA3	0	genome.wustl.edu	37	13	50279819	50279819	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	13	50279819	50279819	T	-	DEL	KPNA3	ENST00000261667	human	ensembl	74_37	-1	known	frame_shift_del	c.1310	p.N437fs	1.000	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,pfam_Importin-a_IBB,pfam_HEAT,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,pfscan_Importin-a_IBB	-	no_errors	KPNA3	HGNC	ENSG00000102753				113	0	0	109	15	12.0968
NEK3	0	genome.wustl.edu	37	13	52718829	52718829	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	13	52718829	52718829	G	-	DEL	NEK3	ENST00000452082	human	ensembl	74_37	-1	known	frame_shift_del	c.864	p.E289fs	0.061	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK3	HGNC	ENSG00000136098				40	0	0	25	7	21.875
RBM26	0	genome.wustl.edu	37	13	79918807	79918807	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	13	79918807	79918807	T	-	DEL	RBM26	ENST00000438724	human	ensembl	74_37	-1	known	frame_shift_del	c.2109	p.K703fs	1.000	NULL	pfam_PWI_dom,superfamily_PWI_dom,smart_Znf_CCCH,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM26	HGNC	ENSG00000139746				47	0	0	51	5	8.92857
CEP170B	0	genome.wustl.edu	37	14	105353063	105353063	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	14	105353063	105353063	C	-	DEL	CEP170B	ENST00000453495	human	ensembl	74_37	+1	known	frame_shift_del	c.2490	p.P832fs	0.940	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	CEP170B	HGNC	ENSG00000099814				25	0	0	8	4	33.3333
HNRNPC	0	genome.wustl.edu	37	14	21679537	21679537	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	14	21679537	21679537	T	-	DEL	HNRNPC	ENST00000336053	human	ensembl	74_37	-1	putative	frame_shift_del	c.826	p.R276fs	0.882	pirsf_hnRNP_C_Raly	pfam_RRM_dom,superfamily_Regulat_G_prot_signal_superfam,smart_RRM_dom,pirsf_hnRNP_C_Raly,pfscan_RRM_dom	-	no_errors	HNRNPC	HGNC	ENSG00000092199				65	0	0	36	5	12.1951
L2HGDH	0	genome.wustl.edu	37	14	50769634	50769634	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	14	50769634	50769634	T	-	DEL	L2HGDH	ENST00000267436	human	ensembl	74_37	-1	known	frame_shift_del	c.242	p.K81fs	1.000	pfam_FAD-dep_OxRdtase	pfam_FAD-dep_OxRdtase	-	no_errors	L2HGDH	HGNC	ENSG00000087299				118	0	0	92	25	21.3675
ESR2	0	genome.wustl.edu	37	14	64746715	64746715	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	14	64746715	64746715	A	-	DEL	ESR2	ENST00000341099	human	ensembl	74_37	-1	known	frame_shift_del	c.519	p.F173fs	1.000	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Estrogen_rcpt_beta_N,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	ESR2	HGNC	ENSG00000140009				357	0	0	140	54	27.8351
ZBTB25	0	genome.wustl.edu	37	14	64953932	64953933	+	Frame_Shift_Del	DEL	AC	AC	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	14	64953932	64953933	AC	-	DEL	ZBTB25	ENST00000394715	human	ensembl	74_37	-1	known	frame_shift_del	c.1017_1016	p.C339fs	1.000:1.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB25	HGNC	ENSG00000089775				131	0	0	61	20	24.6914
ENSG00000259648	0	genome.wustl.edu	37	14	68082855	68082855	+	RNA	DEL	C	C	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	14	68082855	68082855	C	-	DEL	ENSG00000259648	ENST00000559968	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-643G16.4	Clone_based_vega_gene	ENSG00000259648				69	0	0	49	8	14.0351
CLMN	0	genome.wustl.edu	37	14	95662949	95662949	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	14	95662949	95662949	T	-	DEL	CLMN	ENST00000298912	human	ensembl	74_37	-1	known	frame_shift_del	c.2594	p.K865fs	1.000	NULL	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	CLMN	HGNC	ENSG00000165959				57	0	0	50	11	18.0328
LOC101927079	0	genome.wustl.edu	37	15	22332504	22332505	+	RNA	INS	-	-	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	15	22332504	22332505	-	T	INS	LOC101927079	ENST00000558896	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.304:0.319	-	-	-	no_errors	RP11-69H14.6	Clone_based_vega_gene	ENSG00000259176				164	0	0	102	11	9.73451
SNORD116-29	0	genome.wustl.edu	37	15	25351684	25351684	+	RNA	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	15	25351684	25351684	A	-	DEL	SNORD116-29	ENST00000384516	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNORD116-29	HGNC	ENSG00000207245				80	0	0	50	10	16.6667
OCA2	0	genome.wustl.edu	37	15	28200305	28200305	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	15	28200305	28200305	T	-	DEL	OCA2	ENST00000354638	human	ensembl	74_37	-1	known	frame_shift_del	c.1841	p.K614fs	1.000	pfam_Cit_transptr-like_dom,pfam_Arsenical_pump_ArsB,tigrfam_Arsenical_pump_ArsB	pfam_Cit_transptr-like_dom,pfam_Na/sul_symport,pfam_Arsenical_pump_ArsB,tigrfam_Arsenical_pump_ArsB	-	no_errors	OCA2	HGNC	ENSG00000104044				154	0	0	66	27	29.0323
HERC2	0	genome.wustl.edu	37	15	28443624	28443626	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	15	28443624	28443626	AGA	-	DEL	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	in_frame_del	c.7911_7909	p.S2637in_frame_del	0.831:1.000:1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731				105	0	0	56	13	18.8406
EIF2AK4	0	genome.wustl.edu	37	15	40326639	40326639	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	15	40326639	40326639	A	-	DEL	EIF2AK4	ENST00000263791	human	ensembl	74_37	+1	known	frame_shift_del	c.4886	p.K1631fs	1.000	pirsf_Ser/Thr_kinase_GCN2	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RWD-domain,superfamily_Kinase-like_dom,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Anticodon-bd,smart_RWD-domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kinase_GCN2,pfscan_RWD-domain,pfscan_Prot_kinase_dom	-	no_errors	EIF2AK4	HGNC	ENSG00000128829				84	0	0	33	12	26.6667
BAHD1	0	genome.wustl.edu	37	15	40758201	40758201	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	15	40758201	40758201	C	-	DEL	BAHD1	ENST00000416165	human	ensembl	74_37	+1	known	frame_shift_del	c.2215	p.S741fs	1.000	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	BAHD1	HGNC	ENSG00000140320				86	0	0	55	12	17.9104
ZNF106	0	genome.wustl.edu	37	15	42742590	42742591	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	15	42742590	42742591	-	T	INS	ZNF106	ENST00000263805	human	ensembl	74_37	-1	known	frame_shift_ins	c.1811_1810	p.I604fs	0.000:0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_Znf_C2H2-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ZNF106	HGNC	ENSG00000103994				212	0	0	113	19	14.3939
EIF3J	0	genome.wustl.edu	37	15	44843099	44843099	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	15	44843099	44843099	A	-	DEL	EIF3J	ENST00000261868	human	ensembl	74_37	+1	known	frame_shift_del	c.173	p.E61fs	1.000	pfam_eIF3j	pfam_eIF3j	-	no_errors	EIF3J	HGNC	ENSG00000104131				130	0	0	55	13	19.1176
UNC13C	0	genome.wustl.edu	37	15	54527275	54527276	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	15	54527275	54527276	-	A	INS	UNC13C	ENST00000260323	human	ensembl	74_37	+1	known	frame_shift_ins	c.3119_3120	p.T1043fs	1.000:1.000	NULL	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13C	HGNC	ENSG00000137766				67	0	0	33	5	13.1579
ZNF609	0	genome.wustl.edu	37	15	64967247	64967247	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	15	64967247	64967247	A	-	DEL	ZNF609	ENST00000326648	human	ensembl	74_37	+1	known	frame_shift_del	c.2194	p.K734fs	1.000	NULL	pfscan_Znf_C2H2	-	no_errors	ZNF609	HGNC	ENSG00000180357				240	0	0	143	30	17.341
CHRNB4	0	genome.wustl.edu	37	15	78917347	78917348	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	15	78917347	78917348	-	G	INS	CHRNB4	ENST00000412074	human	ensembl	74_37	-1	putative	frame_shift_ins	c.646_645	p.S215fs	0.259:0.275	NULL	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel	-	no_errors	CHRNB4	HGNC	ENSG00000117971				11	0	0	7	6	46.1538
TTC23	0	genome.wustl.edu	37	15	99701948	99701948	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	15	99701948	99701948	T	-	DEL	TTC23	ENST00000262074	human	ensembl	74_37	-1	known	frame_shift_del	c.990	p.E331fs	0.396	NULL	smart_TPR_repeat	-	no_errors	TTC23	HGNC	ENSG00000103852				54	0	0	28	7	20
TVP23A	0	genome.wustl.edu	37	16	10868933	10868933	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	10868933	10868933	A	-	DEL	TVP23A	ENST00000299866	human	ensembl	74_37	-1	known	frame_shift_del	c.110	p.F37fs	1.000	pfam_DUF846_euk	pfam_DUF846_euk	-	no_errors	TVP23A	HGNC	ENSG00000166676				33	0	0	13	5	27.7778
CACNA1H	0	genome.wustl.edu	37	16	1270496	1270496	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	1270496	1270496	C	-	DEL	CACNA1H	ENST00000348261	human	ensembl	74_37	+1	known	frame_shift_del	c.6564	p.C2191fs	0.999	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_PKD_2	-	no_errors	CACNA1H	HGNC	ENSG00000196557				28	0	0	35	5	12.5
DNAH3	0	genome.wustl.edu	37	16	21063028	21063028	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	21063028	21063028	G	-	DEL	DNAH3	ENST00000261383	human	ensembl	74_37	-1	known	frame_shift_del	c.4201	p.R1401fs	1.000	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486				120	0	0	77	11	12.5
KIAA0556	0	genome.wustl.edu	37	16	27761235	27761235	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	27761235	27761235	G	-	DEL	KIAA0556	ENST00000261588	human	ensembl	74_37	+1	known	frame_shift_del	c.2954	p.D987fs	1.000	NULL	superfamily_Thaumatin	-	no_errors	KIAA0556	HGNC	ENSG00000047578				35	0	0	36	4	10
NFAT5	0	genome.wustl.edu	37	16	69726420	69726422	+	In_Frame_Del	DEL	CAG	CAG	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	CAG	CAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	69726420	69726422	CAG	-	DEL	NFAT5	ENST00000432919	human	ensembl	74_37	+1	known	in_frame_del	c.2692_2694	p.Q901in_frame_del	0.966:0.976:0.988	NULL	pfam_RHD,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT,pfscan_RHD,prints_NFAT	-	no_errors	NFAT5	HGNC	ENSG00000102908				41	0	0	27	2	6.89655
WDR90	0	genome.wustl.edu	37	16	709106	709106	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	709106	709106	C	-	DEL	WDR90	ENST00000549091	human	ensembl	74_37	+1	novel	frame_shift_del	c.3032	p.P1013fs	0.000	NULL	pfam_WD40_repeat,pfam_DUF667,pfam_Nucleoporin_Nup160,superfamily_Quinonprotein_ADH-like_supfam,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR90	HGNC	ENSG00000161996				34	0	0	30	4	11.7647
MARVELD3	0	genome.wustl.edu	37	16	71668442	71668442	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	71668442	71668442	G	-	DEL	MARVELD3	ENST00000268485	human	ensembl	74_37	+1	known	frame_shift_del	c.942	p.Y317fs	0.000	NULL	NULL	-	no_errors	MARVELD3	HGNC	ENSG00000140832				35	0	0	42	5	10.6383
ZFHX3	0	genome.wustl.edu	37	16	72821960	72821960	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	72821960	72821960	G	-	DEL	ZFHX3	ENST00000268489	human	ensembl	74_37	-1	known	frame_shift_del	c.10215	p.A3407fs	0.977	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836				16	0	0	23	4	14.8148
USP10	0	genome.wustl.edu	37	16	84778544	84778544	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	84778544	84778544	A	-	DEL	USP10	ENST00000570191	human	ensembl	74_37	+1	known	frame_shift_del	c.469	p.K158fs	1.000	NULL	pfam_Peptidase_C19/C67,pfam_Ataxin-2_C,pfscan_Peptidase_C19/C67	-	no_errors	USP10	HGNC	ENSG00000103194				54	0	0	39	12	23.5294
GSE1	0	genome.wustl.edu	37	16	85682289	85682290	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	85682289	85682290	-	C	INS	GSE1	ENST00000253458	human	ensembl	74_37	+1	known	frame_shift_ins	c.358_359	p.V123fs	1.000:0.999	pfam_GSE-like	pfam_GSE-like	-	no_errors	GSE1	HGNC	ENSG00000131149				30	0	0	41	7	14.5833
MTHFSD	0	genome.wustl.edu	37	16	86582174	86582174	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	16	86582174	86582174	T	-	DEL	MTHFSD	ENST00000360900	human	ensembl	74_37	-1	known	frame_shift_del	c.247	p.T83fs	1.000	pfam_FTHF_cligase	pfam_FTHF_cligase,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	MTHFSD	HGNC	ENSG00000103248				55	0	0	48	4	7.69231
TTC19	0	genome.wustl.edu	37	17	15909838	15909838	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	17	15909838	15909838	A	-	DEL	TTC19	ENST00000486880	human	ensembl	74_37	+1	known	frame_shift_del	c.995	p.I334fs	0.865	NULL	smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC19	HGNC	ENSG00000011295				94	0	0	55	19	25.6757
NUFIP2	0	genome.wustl.edu	37	17	27614342	27614342	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	17	27614342	27614342	T	-	DEL	NUFIP2	ENST00000225388	human	ensembl	74_37	-1	known	frame_shift_del	c.670	p.R224fs	1.000	NULL	NULL	-	no_errors	NUFIP2	HGNC	ENSG00000108256				145	0	0	83	25	23.1481
NSRP1	0	genome.wustl.edu	37	17	28505167	28505167	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	17	28505167	28505167	A	-	DEL	NSRP1	ENST00000247026	human	ensembl	74_37	+1	known	frame_shift_del	c.250	p.K86fs	1.000	pfam_DUF2040	pfam_DUF2040	-	no_errors	NSRP1	HGNC	ENSG00000126653				100	0	0	48	13	21.3115
PLD2	0	genome.wustl.edu	37	17	4726022	4726022	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	17	4726022	4726022	C	-	DEL	PLD2	ENST00000263088	human	ensembl	74_37	+1	known	frame_shift_del	c.2665	p.L891fs	1.000	pirsf_PLipase_D_euk	pfam_Phox,pfam_PLipase_D/transphosphatidylase,superfamily_Phox,smart_Phox,smart_Pleckstrin_homology,smart_PLipase_D/transphosphatidylase,pirsf_PLipase_D_euk,pfscan_Phox,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD2	HGNC	ENSG00000129219				48	0	0	33	6	15.3846
PRR11	0	genome.wustl.edu	37	17	57247171	57247172	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	17	57247171	57247172	AA	-	DEL	PRR11	ENST00000262293	human	ensembl	74_37	+1	known	frame_shift_del	c.58_59	p.K22fs	0.749:0.729	NULL	NULL	-	no_errors	PRR11	HGNC	ENSG00000068489				57	0	0	54	14	20.5882
CHD3	0	genome.wustl.edu	37	17	7794048	7794048	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	17	7794048	7794048	G	-	DEL	CHD3	ENST00000330494	human	ensembl	74_37	+1	known	frame_shift_del	c.373	p.Q127fs	0.984	NULL	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD3	HGNC	ENSG00000170004				25	0	0	7	4	36.3636
ROCK1	0	genome.wustl.edu	37	18	18533678	18533679	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	18	18533678	18533679	-	T	INS	ROCK1	ENST00000399799	human	ensembl	74_37	-1	known	frame_shift_ins	c.3922_3921	p.W1307fs	1.000:1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pirsf_Rho-assoc_coiled-coil_kin,pfscan_Pleckstrin_homology	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Rho-bd_dom,pfam_HR1_rho-bd,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,pirsf_Rho-assoc_coiled-coil_kin,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	ROCK1	HGNC	ENSG00000067900				82	0	0	93	7	7
TRAPPC8	0	genome.wustl.edu	37	18	29453418	29453418	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	18	29453418	29453418	A	-	DEL	TRAPPC8	ENST00000283351	human	ensembl	74_37	-1	known	frame_shift_del	c.2037	p.F679fs	1.000	NULL	NULL	-	no_errors	TRAPPC8	HGNC	ENSG00000153339				33	0	0	38	6	13.6364
SETBP1	0	genome.wustl.edu	37	18	42530559	42530560	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	18	42530559	42530560	-	A	INS	SETBP1	ENST00000282030	human	ensembl	74_37	+1	known	frame_shift_ins	c.1254_1255	p.R420fs	1.000:1.000	NULL	smart_AT_hook_DNA-bd_motif	-	no_errors	SETBP1	HGNC	ENSG00000152217				92	0	0	84	18	17.6471
EPG5	0	genome.wustl.edu	37	18	43459143	43459143	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	18	43459143	43459143	A	-	DEL	EPG5	ENST00000282041	human	ensembl	74_37	-1	known	frame_shift_del	c.5704	p.Y1902fs	1.000	NULL	NULL	-	no_errors	EPG5	HGNC	ENSG00000152223				113	0	0	97	10	9.34579
ZNF878	0	genome.wustl.edu	37	19	12155504	12155504	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	12155504	12155504	A	-	DEL	ZNF878	ENST00000602107	human	ensembl	74_37	-1	known	frame_shift_del	c.853	p.S285fs	0.007	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF878	HGNC	ENSG00000257446				110	0	0	35	16	31.3725
ZNF44	0	genome.wustl.edu	37	19	12384448	12384448	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	12384448	12384448	A	-	DEL	ZNF44	ENST00000393337	human	ensembl	74_37	-1	known	frame_shift_del	c.766	p.W256fs	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF44	HGNC	ENSG00000197857				113	0	0	79	16	16.8421
CIB3	0	genome.wustl.edu	37	19	16275653	16275654	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	16275653	16275654	-	C	INS	CIB3	ENST00000269878	human	ensembl	74_37	-1	known	frame_shift_ins	c.418_417	p.L139fs	1.000:1.000	NULL	pfscan_EF_hand_dom	-	no_errors	CIB3	HGNC	ENSG00000141977				82	0	0	62	17	21.519
KLHL26	0	genome.wustl.edu	37	19	18779306	18779306	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	18779306	18779306	G	-	DEL	KLHL26	ENST00000300976	human	ensembl	74_37	+1	known	frame_shift_del	c.1099	p.Q369fs	0.998	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL26	HGNC	ENSG00000167487				11	0	0	5	3	37.5
EMC10	0	genome.wustl.edu	37	19	50985132	50985132	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	50985132	50985132	G	-	DEL	EMC10	ENST00000376918	human	ensembl	74_37	+1	known	frame_shift_del	c.693	p.A234fs	1.000	NULL	NULL	-	no_errors	EMC10	HGNC	ENSG00000161671				9	0	0	9	2	18.1818
SAFB2	0	genome.wustl.edu	37	19	5587282	5587282	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	5587282	5587282	G	-	DEL	SAFB2	ENST00000252542	human	ensembl	74_37	-1	known	frame_shift_del	c.2834	p.P945fs	0.100	NULL	pfam_RRM_dom,pfam_SAP_dom,smart_SAP_dom,smart_RRM_dom,pfscan_SAP_dom,pfscan_RRM_dom	-	no_errors	SAFB2	HGNC	ENSG00000130254				16	0	0	13	3	18.75
C19orf70	0	genome.wustl.edu	37	19	5679654	5679654	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	5679654	5679654	G	-	DEL	C19orf70	ENST00000309324	human	ensembl	74_37	-1	known	frame_shift_del	c.150	p.A51fs	0.000	NULL	NULL	-	no_errors	C19orf70	HGNC	ENSG00000174917				33	0	0	24	2	7.69231
CATSPERD	0	genome.wustl.edu	37	19	5744474	5744474	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	5744474	5744474	T	-	DEL	CATSPERD	ENST00000381624	human	ensembl	74_37	+1	known	frame_shift_del	c.610	p.S206fs	0.031	superfamily_WD40_repeat_dom	superfamily_WD40_repeat_dom	-	no_errors	CATSPERD	HGNC	ENSG00000174898				84	0	0	47	11	18.9655
UBE2M	0	genome.wustl.edu	37	19	59068128	59068128	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	59068128	59068128	G	-	DEL	UBE2M	ENST00000253023	human	ensembl	74_37	-1	known	frame_shift_del	c.273	p.K92fs	1.000	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2M	HGNC	ENSG00000130725				71	0	0	49	11	18.3333
CAMSAP3	0	genome.wustl.edu	37	19	7676981	7676981	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	7676981	7676981	G	-	DEL	CAMSAP3	ENST00000446248	human	ensembl	74_37	+1	known	frame_shift_del	c.1683	p.E563fs	0.000	NULL	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrel-like,superfamily_CH-domain	-	no_errors	CAMSAP3	HGNC	ENSG00000076826				19	0	0	15	4	21.0526
ACTL9	0	genome.wustl.edu	37	19	8808138	8808138	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	8808138	8808138	G	-	DEL	ACTL9	ENST00000324436	human	ensembl	74_37	-1	known	frame_shift_del	c.914	p.P305fs	0.998	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTL9	HGNC	ENSG00000181786				55	0	0	19	8	29.6296
OR7E24	0	genome.wustl.edu	37	19	9362079	9362079	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	19	9362079	9362079	T	-	DEL	OR7E24	ENST00000456448	human	ensembl	74_37	+1	known	frame_shift_del	c.360	p.F122fs	0.002	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR7E24	HGNC	ENSG00000237521				66	0	0	48	10	17.2414
GCC2	0	genome.wustl.edu	37	2	109086477	109086477	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	109086477	109086477	A	-	DEL	GCC2	ENST00000309863	human	ensembl	74_37	+1	known	frame_shift_del	c.692	p.N233fs	1.000	NULL	pfam_GRIP,superfamily_GRIP,superfamily_tRNA-bd_arm,smart_GRIP,pfscan_GRIP	-	no_errors	GCC2	HGNC	ENSG00000135968				166	0	0	62	69	52.6718
GCC2	0	genome.wustl.edu	37	2	109089309	109089309	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	109089309	109089309	A	-	DEL	GCC2	ENST00000309863	human	ensembl	74_37	+1	known	frame_shift_del	c.2814	p.N940fs	0.638	NULL	pfam_GRIP,superfamily_GRIP,superfamily_tRNA-bd_arm,smart_GRIP,pfscan_GRIP	-	no_errors	GCC2	HGNC	ENSG00000135968				26	0	0	28	10	26.3158
SCN3A	0	genome.wustl.edu	37	2	165947618	165947618	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	165947618	165947618	T	-	DEL	SCN3A	ENST00000283254	human	ensembl	74_37	-1	known	frame_shift_del	c.5045	p.K1682fs	0.999	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfscan_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN3A	HGNC	ENSG00000153253				180	0	0	112	28	20
DHRS9	0	genome.wustl.edu	37	2	169948388	169948389	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	169948388	169948389	-	A	INS	DHRS9	ENST00000432060	human	ensembl	74_37	+1	known	frame_shift_ins	c.841_842	p.L284fs	0.100:0.158	NULL	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	DHRS9	HGNC	ENSG00000073737				65	0	0	35	8	18.6047
GAD1	0	genome.wustl.edu	37	2	171702523	171702523	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	171702523	171702523	A	-	DEL	GAD1	ENST00000358196	human	ensembl	74_37	+1	known	frame_shift_del	c.952	p.I319fs	1.000	pfam_PyrdxlP-dep_de-COase,pfam_Aminotrans_V/Cys_dSase,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase	pfam_PyrdxlP-dep_de-COase,pfam_Aminotrans_V/Cys_dSase,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase	-	no_errors	GAD1	HGNC	ENSG00000128683				111	0	0	56	17	23.2877
FSIP2	0	genome.wustl.edu	37	2	186673635	186673635	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	186673635	186673635	A	-	DEL	FSIP2	ENST00000343098	human	ensembl	74_37	+1	known	frame_shift_del	c.19869	p.I6625fs	0.131	NULL	NULL	-	no_errors	FSIP2	HGNC	ENSG00000188738				56	0	0	43	9	17.3077
COL3A1	0	genome.wustl.edu	37	2	189861201	189861201	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	189861201	189861201	C	-	DEL	COL3A1	ENST00000304636	human	ensembl	74_37	+1	known	frame_shift_del	c.1740	p.G582fs	1.000	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL3A1	HGNC	ENSG00000168542				39	0	0	13	7	35
BMPR2	0	genome.wustl.edu	37	2	203420130	203420130	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	203420130	203420130	A	-	DEL	BMPR2	ENST00000374580	human	ensembl	74_37	+1	known	frame_shift_del	c.1742	p.N583fs	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	BMPR2	HGNC	ENSG00000204217				108	0	0	39	43	52.439
AAMP	0	genome.wustl.edu	37	2	219134766	219134766	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	219134766	219134766	G	-	DEL	AAMP	ENST00000248450	human	ensembl	74_37	-1	known	frame_shift_del	c.44	p.P15fs	0.997	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	AAMP	HGNC	ENSG00000127837				183	0	0	146	26	15.1163
GMPPA	0	genome.wustl.edu	37	2	220366621	220366621	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	220366621	220366621	T	-	DEL	GMPPA	ENST00000313597	human	ensembl	74_37	+1	known	frame_shift_del	c.291	p.R99fs	1.000	pfam_NTP_transferase	pfam_NTP_transferase	-	no_errors	GMPPA	HGNC	ENSG00000144591				108	0	0	97	7	6.73077
SLC4A3	0	genome.wustl.edu	37	2	220497729	220497729	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	220497729	220497729	C	-	DEL	SLC4A3	ENST00000273063	human	ensembl	74_37	+1	known	frame_shift_del	c.1356	p.H452fs	1.000	pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange_3,prints_Anion_exchange,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A3	HGNC	ENSG00000114923				20	0	0	12	8	40
DOCK10	0	genome.wustl.edu	37	2	225729790	225729790	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	225729790	225729790	A	-	DEL	DOCK10	ENST00000258390	human	ensembl	74_37	-1	known	frame_shift_del	c.1272	p.F424fs	1.000	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK10	HGNC	ENSG00000135905				146	0	0	54	40	42.5532
CAPN10	0	genome.wustl.edu	37	2	241536203	241536203	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	241536203	241536203	G	-	DEL	CAPN10	ENST00000391984	human	ensembl	74_37	+1	known	frame_shift_del	c.1587	p.G531fs	0.079	pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Calpain_III	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN10	HGNC	ENSG00000142330				27	0	0	18	3	14.2857
ASXL2	0	genome.wustl.edu	37	2	25965740	25965741	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	25965740	25965741	-	G	INS	ASXL2	ENST00000435504	human	ensembl	74_37	-1	known	frame_shift_ins	c.3466_3465	p.T1155fs	0.002:0.163	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL2	HGNC	ENSG00000143970				132	0	0	112	23	17.037
SULT6B1	0	genome.wustl.edu	37	2	37414553	37414553	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	37414553	37414553	T	-	DEL	SULT6B1	ENST00000535679	human	ensembl	74_37	-1	known	frame_shift_del	c.257	p.K86fs	0.944	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	SULT6B1	HGNC	ENSG00000138068				53	0	0	25	14	35.8974
LHCGR	0	genome.wustl.edu	37	2	48915172	48915172	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	48915172	48915172	A	-	DEL	LHCGR	ENST00000294954	human	ensembl	74_37	-1	known	frame_shift_del	c.1764	p.F588fs	1.000	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_LSH_rcpt,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn,prints_TSH_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	LHCGR	HGNC	ENSG00000138039				146	0	0	86	16	15.6863
RTN4	0	genome.wustl.edu	37	2	55253746	55253746	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	55253746	55253746	T	-	DEL	RTN4	ENST00000337526	human	ensembl	74_37	-1	known	frame_shift_del	c.1489	p.I497fs	1.000	NULL	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN4	HGNC	ENSG00000115310				100	0	0	57	14	19.7183
C2orf42	0	genome.wustl.edu	37	2	70377539	70377539	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	70377539	70377539	G	-	DEL	C2orf42	ENST00000264434	human	ensembl	74_37	-1	known	frame_shift_del	c.1674	p.L559fs	0.000	NULL	NULL	-	no_errors	C2orf42	HGNC	ENSG00000115998				42	0	0	39	3	7.14286
ZNF638	0	genome.wustl.edu	37	2	71629145	71629147	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	71629145	71629147	AGA	-	DEL	ZNF638	ENST00000264447	human	ensembl	74_37	+1	known	in_frame_del	c.2757_2759	p.E921in_frame_del	0.259:0.973:1.000	smart_RRM_dom	pfam_RRM_dom,smart_Znf_U1,smart_Znf_C2H2-like,smart_RRM_dom,pfscan_Znf_C2H2_matrin,pfscan_RRM_dom	-	no_errors	ZNF638	HGNC	ENSG00000075292				55	0	0	26	23	46.9388
RNF103	0	genome.wustl.edu	37	2	86831891	86831891	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	2	86831891	86831891	A	-	DEL	RNF103	ENST00000237455	human	ensembl	74_37	-1	known	frame_shift_del	c.1133	p.L378fs	1.000	NULL	pfam_Znf_C3HC4_RING-type,superfamily_Thioredoxin-like_fold,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF103	HGNC	ENSG00000239305				89	0	0	70	28	28.5714
TGM6	0	genome.wustl.edu	37	20	2384126	2384126	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	20	2384126	2384126	C	-	DEL	TGM6	ENST00000202625	human	ensembl	74_37	+1	known	frame_shift_del	c.1073	p.Q360fs	1.000	NULL	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM6	HGNC	ENSG00000166948				43	0	0	24	6	20
RBM12	0	genome.wustl.edu	37	20	34242562	34242562	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	20	34242562	34242562	G	-	DEL	RBM12	ENST00000359646	human	ensembl	74_37	-1	known	frame_shift_del	c.683	p.P228fs	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM12	HGNC	ENSG00000244462				66	0	0	46	7	13.2075
HNF4A	0	genome.wustl.edu	37	20	43047140	43047140	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	20	43047140	43047140	G	-	DEL	HNF4A	ENST00000316099	human	ensembl	74_37	+1	known	frame_shift_del	c.724	p.V242fs	0.906	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_COUP_TF,prints_Retinoid-X_rcpt/HNF4	-	no_errors	HNF4A	HGNC	ENSG00000101076				67	0	0	47	14	22.9508
KCNQ2	0	genome.wustl.edu	37	20	62038661	62038661	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	20	62038661	62038661	G	-	DEL	KCNQ2	ENST00000354587	human	ensembl	74_37	-1	known	frame_shift_del	c.1979	p.P660fs	0.945	pfam_K_chnl_volt-dep_KCNQ_C	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ankyrin-G_BS,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_KCNQ2,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ2	HGNC	ENSG00000075043				31	0	0	18	7	28
NRIP1	0	genome.wustl.edu	37	21	16338330	16338330	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	21	16338330	16338330	T	-	DEL	NRIP1	ENST00000318948	human	ensembl	74_37	-1	known	frame_shift_del	c.2184	p.E729fs	0.998	NULL	NULL	-	no_errors	NRIP1	HGNC	ENSG00000180530				50	0	0	30	11	26.8293
HMGN1	0	genome.wustl.edu	37	21	40720231	40720231	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	21	40720231	40720231	T	-	DEL	HMGN1	ENST00000380749	human	ensembl	74_37	-1	known	frame_shift_del	c.113	p.K38fs	0.997	pfam_HMGN_fam,smart_HMGN_fam,prints_HMGN_fam	pfam_HMGN_fam,smart_HMGN_fam,prints_HMGN_fam	-	no_errors	HMGN1	HGNC	ENSG00000205581				86	0	0	41	10	19.6078
DSCAM	0	genome.wustl.edu	37	21	41514614	41514615	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	21	41514614	41514615	-	G	INS	DSCAM	ENST00000400454	human	ensembl	74_37	-1	known	frame_shift_ins	c.3277_3276	p.E1092fs	1.000:0.013	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub2,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DSCAM	HGNC	ENSG00000171587				110	0	0	76	12	13.6364
COL18A1	0	genome.wustl.edu	37	21	46917558	46917559	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	21	46917558	46917559	-	C	INS	COL18A1	ENST00000359759	human	ensembl	74_37	+1	known	frame_shift_ins	c.3911_3912	p.G1307fs	0.724:0.333	pfam_Collagen	pfam_Collagenase_NC10/endostatin,pfam_DUF959_COL18_N,pfam_Collagen,pfam_Frizzled_dom,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl_sf,superfamily_Frizzled_dom,smart_Frizzled_dom,smart_Laminin_G,pfscan_Frizzled_dom	-	no_errors	COL18A1	HGNC	ENSG00000182871				10	0	0	3	3	50
CECR1	0	genome.wustl.edu	37	22	17663531	17663531	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	22	17663531	17663531	T	-	DEL	CECR1	ENST00000262607	human	ensembl	74_37	-1	known	frame_shift_del	c.1202	p.K401fs	0.979	pfam_A/AMP_deaminase_dom,tigrfam_Ad_deam-like	pfam_A/AMP_deaminase_dom,pfam_A_deaminase_N,tigrfam_Ad_deam-like	-	no_errors	CECR1	HGNC	ENSG00000093072				119	0	0	79	8	9.1954
SREBF2	0	genome.wustl.edu	37	22	42271636	42271637	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	22	42271636	42271637	-	C	INS	SREBF2	ENST00000361204	human	ensembl	74_37	+1	known	frame_shift_ins	c.1294_1295	p.A435fs	1.000:1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	SREBF2	HGNC	ENSG00000198911				120	0	0	60	7	10.4478
SENP7	0	genome.wustl.edu	37	3	101070484	101070484	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	101070484	101070484	T	-	DEL	SENP7	ENST00000394095	human	ensembl	74_37	-1	known	frame_shift_del	c.1635	p.K545fs	0.977	NULL	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP7	HGNC	ENSG00000138468				31	0	0	11	10	47.619
MORC1	0	genome.wustl.edu	37	3	108751611	108751611	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	108751611	108751611	A	-	DEL	MORC1	ENST00000232603	human	ensembl	74_37	-1	known	frame_shift_del	c.1521	p.F507fs	0.034	pfam_Znf_CW,pfscan_Znf_CW	pfam_Znf_CW,superfamily_HATPase_ATP-bd,pfscan_Znf_CW	-	no_errors	MORC1	HGNC	ENSG00000114487				82	0	0	44	10	18.5185
NPHP3	0	genome.wustl.edu	37	3	132438596	132438597	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	132438596	132438597	CT	-	DEL	NPHP3	ENST00000337331	human	ensembl	74_37	-1	known	frame_shift_del	c.472_471	p.R157fs	1.000:1.000	NULL	pfam_TPR_1,pfam_TPR-3,superfamily_P-loop_NTPase,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	NPHP3	HGNC	ENSG00000113971				73	0	0	60	14	18.9189
SLC35G2	0	genome.wustl.edu	37	3	136573858	136573858	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	136573858	136573858	T	-	DEL	SLC35G2	ENST00000393079	human	ensembl	74_37	+1	known	frame_shift_del	c.556	p.S187fs	1.000	pfam_DMT	pfam_DMT	-	no_errors	SLC35G2	HGNC	ENSG00000168917				108	0	0	79	9	10.2273
XRN1	0	genome.wustl.edu	37	3	142051906	142051906	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	142051906	142051906	A	-	DEL	XRN1	ENST00000264951	human	ensembl	74_37	-1	known	frame_shift_del	c.3965	p.L1322fs	1.000	pirsf_5_3_exoribonuclease_1	pfam_Put_53exo,pirsf_5_3_exoribonuclease_1	-	no_errors	XRN1	HGNC	ENSG00000114127				42	0	0	39	11	22
SMC4	0	genome.wustl.edu	37	3	160143940	160143940	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	160143940	160143940	A	-	DEL	SMC4	ENST00000344722	human	ensembl	74_37	+1	known	frame_shift_del	c.2557	p.K855fs	0.998	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase,superfamily_Chemotax_Me-accpt_rcpt_lig-bd	pfam_RecF/RecN/SMC_N,pfam_SMC_hinge,superfamily_P-loop_NTPase,superfamily_SMC_hinge,superfamily_Chemotax_Me-accpt_rcpt_lig-bd,superfamily_Prefoldin,smart_SMC_hinge	-	no_errors	SMC4	HGNC	ENSG00000113810				296	0	0	249	34	12.0141
TNFSF10	0	genome.wustl.edu	37	3	172224303	172224303	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	172224303	172224303	A	-	DEL	TNFSF10	ENST00000241261	human	ensembl	74_37	-1	known	frame_shift_del	c.825	p.F275fs	0.424	pfam_TNF_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_TNF_dom,pirsf_TNF_ligand_10/11,pfscan_TNF_dom	pfam_TNF_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_TNF_dom,pirsf_TNF_ligand_10/11,pfscan_TNF_dom	-	no_errors	TNFSF10	HGNC	ENSG00000121858				51	0	0	56	7	11.1111
FXR1	0	genome.wustl.edu	37	3	180666228	180666228	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	180666228	180666228	A	-	DEL	FXR1	ENST00000357559	human	ensembl	74_37	+1	known	frame_shift_del	c.364	p.N124fs	1.000	NULL	pfam_Frag_X_MRP_fam,pfam_KH_dom_type_1,pfam_Agenet-like_dom,superfamily_NA-bd_OB-fold,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FXR1	HGNC	ENSG00000114416				69	0	0	38	10	20.8333
B3GNT5	0	genome.wustl.edu	37	3	182988627	182988627	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	182988627	182988627	T	-	DEL	B3GNT5	ENST00000326505	human	ensembl	74_37	+1	known	frame_shift_del	c.1041	p.F349fs	0.021	NULL	pfam_Glyco_trans_31,superfamily_Luciferase-like_dom	-	no_errors	B3GNT5	HGNC	ENSG00000176597				61	0	0	44	8	15.3846
THRB	0	genome.wustl.edu	37	3	24206519	24206519	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	24206519	24206519	T	-	DEL	THRB	ENST00000280696	human	ensembl	74_37	-1	putative	frame_shift_del	c.327	p.Y111fs	1.000	prints_ThyrH_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_ThyrH_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	THRB	HGNC	ENSG00000151090				49	0	0	31	6	16.2162
CLASP2	0	genome.wustl.edu	37	3	33602361	33602361	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	33602361	33602361	T	-	DEL	CLASP2	ENST00000399362	human	ensembl	74_37	-1	known	frame_shift_del	c.2890	p.M964fs	1.000	superfamily_ARM-type_fold	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	CLASP2	HGNC	ENSG00000163539				134	0	0	83	14	14.433
POMGNT2	0	genome.wustl.edu	37	3	43121686	43121686	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	43121686	43121686	C	-	DEL	POMGNT2	ENST00000344697	human	ensembl	74_37	-1	known	frame_shift_del	c.1238	p.G413fs	1.000	NULL	pfam_Glycosyltransferase_AER61,superfamily_Fibronectin_type3	-	no_errors	POMGNT2	HGNC	ENSG00000144647				39	0	0	36	10	21.7391
CCR2	0	genome.wustl.edu	37	3	46399085	46399085	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	46399085	46399085	T	-	DEL	CCR2	ENST00000292301	human	ensembl	74_37	+1	known	frame_shift_del	c.67	p.F24fs	0.000	prints_Chemokine_CCR2	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Chemokine_CCR2	-	no_errors	CCR2	HGNC	ENSG00000121807				149	0	0	135	16	10.596
MAPKAPK3	0	genome.wustl.edu	37	3	50655080	50655080	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	50655080	50655080	G	-	DEL	MAPKAPK3	ENST00000357955	human	ensembl	74_37	+1	known	frame_shift_del	c.84	p.R31fs	0.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAPKAPK3	HGNC	ENSG00000114738				42	0	0	34	7	17.0732
NEK4	0	genome.wustl.edu	37	3	52797501	52797501	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	52797501	52797501	A	-	DEL	NEK4	ENST00000233027	human	ensembl	74_37	-1	known	frame_shift_del	c.806	p.L269fs	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK4	HGNC	ENSG00000114904				374	0	0	265	42	13.6808
DNAH12	0	genome.wustl.edu	37	3	57509313	57509313	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	57509313	57509313	T	-	DEL	DNAH12	ENST00000351747	human	ensembl	74_37	-1	known	frame_shift_del	c.276	p.G93fs	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH12	HGNC	ENSG00000174844				25	0	0	19	12	38.7097
PROK2	0	genome.wustl.edu	37	3	71821968	71821968	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	71821968	71821968	A	-	DEL	PROK2	ENST00000295619	human	ensembl	74_37	-1	known	frame_shift_del	c.297	p.F99fs	0.619	pfam_Prokineticin_domain	pfam_Prokineticin_domain	-	no_errors	PROK2	HGNC	ENSG00000163421				59	0	0	41	4	8.88889
ROBO2	0	genome.wustl.edu	37	3	77684125	77684125	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	3	77684125	77684125	A	-	DEL	ROBO2	ENST00000461745	human	ensembl	74_37	+1	known	frame_shift_del	c.3865	p.K1290fs	0.976	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO2	HGNC	ENSG00000185008				75	0	0	65	6	8.4507
QRFPR	0	genome.wustl.edu	37	4	122250739	122250740	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	4	122250739	122250740	-	T	INS	QRFPR	ENST00000394427	human	ensembl	74_37	-1	known	frame_shift_ins	c.1026_1025	p.N342fs	0.990:1.000	pfam_7TM_GPCR_olfarory/Srsx,prints_NPY_rcpt,prints_NPFF_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_NPY_rcpt,prints_NPFF_rcpt	-	no_errors	QRFPR	HGNC	ENSG00000186867				66	0	0	33	6	15.3846
MFSD8	0	genome.wustl.edu	37	4	128861148	128861148	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	4	128861148	128861148	A	-	DEL	MFSD8	ENST00000296468	human	ensembl	74_37	-1	known	frame_shift_del	c.558	p.Q187fs	1.000	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	MFSD8	HGNC	ENSG00000164073				65	0	0	26	10	27.7778
FHDC1	0	genome.wustl.edu	37	4	153864507	153864507	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	4	153864507	153864507	T	-	DEL	FHDC1	ENST00000260008	human	ensembl	74_37	+1	known	frame_shift_del	c.298	p.W102fs	1.000	pfam_FH2_Formin,smart_FH2_Formin	pfam_FH2_Formin,smart_FH2_Formin	-	no_errors	FHDC1	HGNC	ENSG00000137460				230	0	0	140	35	20
IRF2	0	genome.wustl.edu	37	4	185329341	185329341	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	4	185329341	185329341	T	-	DEL	IRF2	ENST00000393593	human	ensembl	74_37	-1	known	frame_shift_del	c.500	p.N167fs	0.996	pirsf_Interferon_reg_fac-1/2	pfam_Interferon_reg_fact_DNA-bd_dom,smart_Interferon_reg_fact_DNA-bd_dom,pirsf_Interferon_reg_fac-1/2,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF2	HGNC	ENSG00000168310				78	0	0	40	10	20
RGS12	0	genome.wustl.edu	37	4	3319285	3319285	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	4	3319285	3319285	G	-	DEL	RGS12	ENST00000344733	human	ensembl	74_37	+1	known	frame_shift_del	c.1388	p.G464fs	0.351	NULL	pfam_Raf-like_ras-bd,pfam_RGS_dom,pfam_PDZ,pfam_GoLoco_motif,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_PTB/PI_dom,smart_Regulat_G_prot_signal_superfam,smart_Raf-like_ras-bd,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_PDZ,pfscan_PTB/PI_dom,pfscan_Raf-like_ras-bd,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS12	HGNC	ENSG00000159788				24	0	0	20	5	20
RGS12	0	genome.wustl.edu	37	4	3432431	3432431	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	4	3432431	3432431	C	-	DEL	RGS12	ENST00000344733	human	ensembl	74_37	+1	known	frame_shift_del	c.3863	p.1292fs	0.000	NULL	pfam_Raf-like_ras-bd,pfam_RGS_dom,pfam_PDZ,pfam_GoLoco_motif,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_PTB/PI_dom,smart_Regulat_G_prot_signal_superfam,smart_Raf-like_ras-bd,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_PDZ,pfscan_PTB/PI_dom,pfscan_Raf-like_ras-bd,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS12	HGNC	ENSG00000159788				10	0	0	7	2	22.2222
N4BP2	0	genome.wustl.edu	37	4	40122061	40122061	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	4	40122061	40122061	A	-	DEL	N4BP2	ENST00000261435	human	ensembl	74_37	+1	known	frame_shift_del	c.2330	p.K778fs	0.992	NULL	pfam_DUF1771,pfam_Smr/MutS2_C,superfamily_P-loop_NTPase,superfamily_UBA-like,smart_Smr/MutS2_C,pfscan_CUE,pfscan_Smr/MutS2_C	-	no_errors	N4BP2	HGNC	ENSG00000078177				97	0	0	43	8	15.6863
ATP8A1	0	genome.wustl.edu	37	4	42445639	42445639	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	4	42445639	42445639	A	-	DEL	ATP8A1	ENST00000381668	human	ensembl	74_37	-1	known	frame_shift_del	c.3066	p.F1022fs	0.991	tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP8A1	HGNC	ENSG00000124406				63	0	0	41	7	14.5833
OCIAD1	0	genome.wustl.edu	37	4	48859372	48859372	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	4	48859372	48859372	A	-	DEL	OCIAD1	ENST00000264312	human	ensembl	74_37	+1	known	frame_shift_del	c.690	p.E233fs	0.300	NULL	pfam_OCIA	-	no_errors	OCIAD1	HGNC	ENSG00000109180				88	0	0	48	15	23.8095
RAD50	0	genome.wustl.edu	37	5	131944382	131944382	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	131944382	131944382	A	-	DEL	RAD50	ENST00000265335	human	ensembl	74_37	+1	known	frame_shift_del	c.2794	p.N934fs	1.000	superfamily_P-loop_NTPase,tigrfam_Rad50_eukaryotes	pfam_Rad50_Zn_hook,superfamily_P-loop_NTPase,superfamily_Prefoldin,pfscan_Zn_hook_Rad50,tigrfam_Rad50_eukaryotes	-	no_errors	RAD50	HGNC	ENSG00000113522				15	0	0	14	5	26.3158
IPO11	0	genome.wustl.edu	37	5	61770244	61770245	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	61770244	61770245	-	T	INS	IPO11	ENST00000409296	human	ensembl	74_37	+1	known	frame_shift_ins	c.830_831	p.L279fs	1.000:1.000	superfamily_ARM-type_fold	pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	IPO11	HGNC	ENSG00000086200				42	0	0	39	10	20.4082
AGGF1	0	genome.wustl.edu	37	5	76358967	76358967	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	76358967	76358967	A	-	DEL	AGGF1	ENST00000312916	human	ensembl	74_37	+1	known	frame_shift_del	c.2035	p.N681fs	1.000	NULL	pfam_FHA_dom,pfam_G_patch_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,smart_G_patch_dom,pfscan_FHA_dom,pfscan_G_patch_dom	-	no_errors	AGGF1	HGNC	ENSG00000164252				264	0	0	157	34	17.801
THBS4	0	genome.wustl.edu	37	5	79372814	79372814	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	79372814	79372814	C	-	DEL	THBS4	ENST00000350881	human	ensembl	74_37	+1	known	frame_shift_del	c.2029	p.P678fs	0.999	NULL	pfam_Thrombospondin_C,pfam_Thbs/COMP_coiled-coil,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	THBS4	HGNC	ENSG00000113296				201	0	0	112	29	20.5674
BRD9	0	genome.wustl.edu	37	5	889776	889777	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	889776	889777	-	A	INS	BRD9	ENST00000323510	human	ensembl	74_37	-1	known	frame_shift_ins	c.39_38	p.L14fs	0.000:0.002	NULL	pfam_DUF3512,pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD9	HGNC	ENSG00000028310				72	0	0	26	8	23.5294
CHD1	0	genome.wustl.edu	37	5	98236745	98236745	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	5	98236745	98236745	T	-	DEL	CHD1	ENST00000284049	human	ensembl	74_37	-1	known	frame_shift_del	c.629	p.K210fs	1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Homeodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD1	HGNC	ENSG00000153922				54	0	0	30	8	21.0526
GCNT2	0	genome.wustl.edu	37	6	10557410	10557410	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	10557410	10557410	C	-	DEL	GCNT2	ENST00000316170	human	ensembl	74_37	+1	known	frame_shift_del	c.754	p.H254fs	1.000	pfam_Glyco_trans_14	pfam_Glyco_trans_14	-	no_errors	GCNT2	HGNC	ENSG00000111846				117	0	0	65	8	10.9589
ARHGAP18	0	genome.wustl.edu	37	6	129959603	129959603	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	129959603	129959603	T	-	DEL	ARHGAP18	ENST00000368149	human	ensembl	74_37	-1	known	frame_shift_del	c.488	p.N163fs	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP18	HGNC	ENSG00000146376				157	0	0	137	13	8.66667
DTNBP1	0	genome.wustl.edu	37	6	15524787	15524789	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	15524787	15524789	CTC	-	DEL	DTNBP1	ENST00000355917	human	ensembl	74_37	-1	known	in_frame_del	c.784_782	p.G261in_frame_del	1.000:0.840:0.887	pfam_Dysbindin	pfam_Dysbindin,superfamily_Trp_syn_b_sub_like_PLP_eny_SF	-	no_errors	DTNBP1	HGNC	ENSG00000047579				104	0	0	52	9	14.7541
DYNLT1	0	genome.wustl.edu	37	6	159062373	159062375	+	In_Frame_Del	DEL	TCA	TCA	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	TCA	TCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	159062373	159062375	TCA	-	DEL	DYNLT1	ENST00000367089	human	ensembl	74_37	-1	known	in_frame_del	c.47_45	p.D15in_frame_del	1.000:0.998:1.000	pfam_Tctex	pfam_Tctex	-	no_errors	DYNLT1	HGNC	ENSG00000146425				85	0	0	37	12	24.4898
PLG	0	genome.wustl.edu	37	6	161157984	161157984	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	161157984	161157984	G	-	DEL	PLG	ENST00000308192	human	ensembl	74_37	+1	known	frame_shift_del	c.1747	p.C585fs	0.999	pirsf_Pept_S1A_plasmin,pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pirsf_Pept_S1A_plasmin,pfam_Kringle,pfam_Peptidase_S1,pfam_PAN-1_domain,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1	-	no_errors	PLG	HGNC	ENSG00000122194				47	0	0	41	6	12.766
MBOAT1	0	genome.wustl.edu	37	6	20144533	20144534	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	20144533	20144534	-	A	INS	MBOAT1	ENST00000324607	human	ensembl	74_37	-1	known	frame_shift_ins	c.337_336	p.V112fs	1.000:0.997	NULL	pfam_MBOAT_fam	-	no_errors	MBOAT1	HGNC	ENSG00000172197				96	0	0	85	10	10.5263
HLA-A	0	genome.wustl.edu	37	6	29911900	29911900	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	29911900	29911900	C	-	DEL	HLA-A	ENST00000376806	human	ensembl	74_37	+1	known	frame_shift_del	c.621	p.K210fs	0.000	pfscan_Ig-like_dom	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,pfam_MHC_I_a_C,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom,prints_MHC_I_a	-	no_errors	HLA-A	HGNC	ENSG00000206503				135	0	0	106	20	15.873
PPP1R10	0	genome.wustl.edu	37	6	30569341	30569341	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	30569341	30569341	C	-	DEL	PPP1R10	ENST00000376511	human	ensembl	74_37	-1	known	frame_shift_del	c.2808	p.L939fs	1.000	NULL	pfam_TFIIS_N,pfam_Znf_CCCH,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,smart_Znf_CCCH	-	no_errors	PPP1R10	HGNC	ENSG00000204569				28	0	0	26	5	16.129
RXRB	0	genome.wustl.edu	37	6	33164323	33164323	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	33164323	33164323	C	-	DEL	RXRB	ENST00000374680	human	ensembl	74_37	-1	known	frame_shift_del	c.881	p.G294fs	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoid-X_rcpt/HNF4,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt	-	no_errors	RXRB	HGNC	ENSG00000204231				43	0	0	41	8	16.3265
SLC26A8	0	genome.wustl.edu	37	6	35912065	35912065	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	35912065	35912065	T	-	DEL	SLC26A8	ENST00000355574	human	ensembl	74_37	-1	known	frame_shift_del	c.2525	p.N842fs	0.000	NULL	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom	-	no_errors	SLC26A8	HGNC	ENSG00000112053				44	0	0	46	10	17.8571
PRPF4B	0	genome.wustl.edu	37	6	4031881	4031881	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	4031881	4031881	A	-	DEL	PRPF4B	ENST00000337659	human	ensembl	74_37	+1	known	frame_shift_del	c.130	p.K46fs	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	PRPF4B	HGNC	ENSG00000112739				55	0	0	42	8	16
OGFRL1	0	genome.wustl.edu	37	6	72011426	72011426	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	72011426	72011426	A	-	DEL	OGFRL1	ENST00000370435	human	ensembl	74_37	+1	known	frame_shift_del	c.1030	p.A346fs	1.000	NULL	pfam_OGF_rcpt	-	no_errors	OGFRL1	HGNC	ENSG00000119900				121	0	0	78	7	8.23529
CYB5R4	0	genome.wustl.edu	37	6	84634231	84634231	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	84634231	84634231	A	-	DEL	CYB5R4	ENST00000369681	human	ensembl	74_37	+1	known	frame_shift_del	c.734	p.E248fs	0.868	superfamily_HSP20-like_chaperone,pfscan_CS_dom	pfam_Cyt_B5-like_heme/steroid-bd,pfam_OxRdtase_FAD-bd_dom,pfam_OxRdtase_FAD/NAD-bd,pfam_CS_dom,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_Riboflavin_synthase-like_b-brl,superfamily_HSP20-like_chaperone,pfscan_CS_dom,pfscan_Cyt_B5-like_heme/steroid-bd,prints_NADH-Cyt_B5_reductase,prints_Cyt_B5-like_heme/steroid-bd	-	no_errors	CYB5R4	HGNC	ENSG00000065615				68	0	0	39	8	17.0213
MDN1	0	genome.wustl.edu	37	6	90432675	90432675	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	6	90432675	90432675	T	-	DEL	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	frame_shift_del	c.5966	p.K1989fs	1.000	superfamily_P-loop_NTPase,pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				206	0	0	167	26	13.4715
AGFG2	0	genome.wustl.edu	37	7	100148122	100148124	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	100148122	100148124	AGA	-	DEL	AGFG2	ENST00000300176	human	ensembl	74_37	+1	known	in_frame_del	c.419_421	p.K142in_frame_del	1.000:1.000:1.000	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGFG2	HGNC	ENSG00000106351				67	0	0	55	9	14.0625
WASL	0	genome.wustl.edu	37	7	123334810	123334811	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	123334810	123334811	-	T	INS	WASL	ENST00000223023	human	ensembl	74_37	-1	known	frame_shift_ins	c.785_784	p.T262fs	1.000:1.000	superfamily_WASP_C	pfam_WH1/EVH1,pfam_CRIB_dom,pfam_WH2_dom,superfamily_WASP_C,smart_WH1/EVH1,smart_CRIB_dom,smart_WH2_dom,pfscan_CRIB_dom,pfscan_WH1/EVH1,pfscan_WH2_dom	-	no_errors	WASL	HGNC	ENSG00000106299				157	0	0	99	21	17.5
FLNC	0	genome.wustl.edu	37	7	128478816	128478816	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	128478816	128478816	C	-	DEL	FLNC	ENST00000325888	human	ensembl	74_37	+1	known	frame_shift_del	c.1370	p.I459fs	0.933	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNC	HGNC	ENSG00000128591				55	0	0	47	10	17.5439
CPA4	0	genome.wustl.edu	37	7	129933076	129933076	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	129933076	129933076	A	-	DEL	CPA4	ENST00000222482	human	ensembl	74_37	+1	known	frame_shift_del	c.56	p.K20fs	0.890	superfamily_Prot_inh_propept	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPA4	HGNC	ENSG00000128510				73	0	0	73	9	10.9756
EPHB6	0	genome.wustl.edu	37	7	142562308	142562309	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	142562308	142562309	-	G	INS	EPHB6	ENST00000392957	human	ensembl	74_37	+1	known	frame_shift_ins	c.750_751	p.A252fs	0.423:0.992	pirsf_Tyr_kinase_ephrin_rcpt	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHB6	HGNC	ENSG00000106123				37	0	0	37	5	11.9048
NOS3	0	genome.wustl.edu	37	7	150698398	150698398	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	150698398	150698398	G	-	DEL	NOS3	ENST00000297494	human	ensembl	74_37	+1	known	frame_shift_del	c.1313	p.G440fs	1.000	pfam_NO_synthase_oxygenase_dom,superfamily_NO_synthase_oxygenase_dom,pirsf_NOS_euk	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,pirsf_NOS_euk,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS3	HGNC	ENSG00000164867				34	0	0	53	7	11.6667
DNAH11	0	genome.wustl.edu	37	7	21631141	21631141	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	21631141	21631141	A	-	DEL	DNAH11	ENST00000328843	human	ensembl	74_37	+1	known	frame_shift_del	c.2613	p.K873fs	0.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877				77	0	0	61	8	11.5942
MPP6	0	genome.wustl.edu	37	7	24705666	24705666	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	24705666	24705666	A	-	DEL	MPP6	ENST00000222644	human	ensembl	74_37	+1	known	frame_shift_del	c.910	p.K306fs	1.000	superfamily_SH3_domain	pfam_GK/Ca_channel_bsu,pfam_L27_C,pfam_SH3_2,pfam_PDZ,pfam_SH3_domain,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	MPP6	HGNC	ENSG00000105926				159	0	0	96	17	15.0442
JAZF1	0	genome.wustl.edu	37	7	27872467	27872470	+	Frame_Shift_Del	DEL	ATTG	ATTG	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	ATTG	ATTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	27872467	27872470	ATTG	-	DEL	JAZF1	ENST00000283928	human	ensembl	74_37	-1	known	frame_shift_del	c.684_681	p.N228fs	0.999:1.000:1.000:1.000	smart_Znf_C2H2-like	smart_Znf_C2H2-like	-	no_errors	JAZF1	HGNC	ENSG00000153814				103	0	0	68	8	10.5263
ZNF716	0	genome.wustl.edu	37	7	57528542	57528542	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	57528542	57528542	A	-	DEL	ZNF716	ENST00000420713	human	ensembl	74_37	+1	known	frame_shift_del	c.375	p.K127fs	0.128	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF716	HGNC	ENSG00000182111				78	0	0	46	8	14.8148
DTX2	0	genome.wustl.edu	37	7	76112249	76112249	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	76112249	76112249	A	-	DEL	DTX2	ENST00000324432	human	ensembl	74_37	+1	known	frame_shift_del	c.693	p.H232fs	0.794	NULL	pfam_WWE-dom,smart_WWE-dom_subgr,smart_Znf_RING,pfscan_WWE-dom,pfscan_Znf_RING	-	no_errors	DTX2	HGNC	ENSG00000091073				178	0	0	142	11	7.18954
TMEM60	0	genome.wustl.edu	37	7	77423460	77423460	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	77423460	77423460	T	-	DEL	TMEM60	ENST00000257663	human	ensembl	74_37	-1	known	frame_shift_del	c.231	p.A78fs	0.998	NULL	pfam_TM_Fragile-X-F-assoc	-	no_errors	TMEM60	HGNC	ENSG00000135211				121	0	0	87	19	17.9245
ZKSCAN5	0	genome.wustl.edu	37	7	99129417	99129418	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	7	99129417	99129418	-	A	INS	ZKSCAN5	ENST00000326775	human	ensembl	74_37	+1	known	frame_shift_ins	c.2065_2066	p.N691fs	0.016:0.005	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZKSCAN5	HGNC	ENSG00000196652				144	0	0	102	14	12.069
UBR5	0	genome.wustl.edu	37	8	103289349	103289349	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	103289349	103289349	T	-	DEL	UBR5	ENST00000520539	human	ensembl	74_37	-1	known	frame_shift_del	c.6360	p.E2121fs	0.987	NULL	pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_RCC1/BLIP-II,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin	-	no_errors	UBR5	HGNC	ENSG00000104517				89	0	0	81	29	26.3636
RP1L1	0	genome.wustl.edu	37	8	10467122	10467123	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	10467122	10467123	-	G	INS	RP1L1	ENST00000382483	human	ensembl	74_37	-1	known	frame_shift_ins	c.4486_4485	p.T1495fs	0.000:0.000	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1L1	HGNC	ENSG00000183638				41	0	0	43	8	15.6863
RIMS2	0	genome.wustl.edu	37	8	104898242	104898242	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	104898242	104898242	A	-	DEL	RIMS2	ENST00000406091	human	ensembl	74_37	+1	known	frame_shift_del	c.1415	p.M474fs	1.000	NULL	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS2	HGNC	ENSG00000176406				70	0	0	78	25	24.2718
MYC	0	genome.wustl.edu	37	8	128753073	128753073	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	128753073	128753073	A	-	DEL	MYC	ENST00000377970	human	ensembl	74_37	+1	known	frame_shift_del	c.1234	p.A414fs	1.000	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom,prints_Tscrpt_reg_Myc	pfam_Tscrpt_reg_Myc_N,pfam_Myc-LZ,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom,prints_Tscrpt_reg_Myc	-	no_errors	MYC	HGNC	ENSG00000136997				191	0	0	239	33	12.1324
KCNQ3	0	genome.wustl.edu	37	8	133141659	133141659	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	133141659	133141659	C	-	DEL	KCNQ3	ENST00000388996	human	ensembl	74_37	-1	known	frame_shift_del	c.2469	p.S824fs	0.000	pfam_Ankyrin-G_BS	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ankyrin-G_BS,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_KCNQ3,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ3	HGNC	ENSG00000184156				44	0	0	31	9	22.5
MYOM2	0	genome.wustl.edu	37	8	2088683	2088683	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	2088683	2088683	G	-	DEL	MYOM2	ENST00000262113	human	ensembl	74_37	+1	known	frame_shift_del	c.3838	p.S1282fs	1.000	NULL	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYOM2	HGNC	ENSG00000036448				70	0	0	79	17	17.7083
SCARA5	0	genome.wustl.edu	37	8	27729504	27729504	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	27729504	27729504	C	-	DEL	SCARA5	ENST00000354914	human	ensembl	74_37	-1	known	frame_shift_del	c.1435	p.V479fs	1.000	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_SRCR,pfam_Collagen,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_SRCR,pfscan_SRCR	-	no_errors	SCARA5	HGNC	ENSG00000168079				86	0	0	108	6	5.26316
CHRNB3	0	genome.wustl.edu	37	8	42587571	42587571	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	42587571	42587571	A	-	DEL	CHRNB3	ENST00000289957	human	ensembl	74_37	+1	known	frame_shift_del	c.1121	p.K376fs	0.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNB3	HGNC	ENSG00000147432				48	0	0	39	9	18.75
THAP1	0	genome.wustl.edu	37	8	42694398	42694399	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	42694398	42694399	CT	-	DEL	THAP1	ENST00000254250	human	ensembl	74_37	-1	known	frame_shift_del	c.198_197	p.E66fs	1.000:1.000	pfam_Znf_C2CH,smart_Znf_C2CH,pfscan_Znf_C2CH	pfam_Znf_C2CH,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	THAP1	HGNC	ENSG00000131931				129	0	0	129	20	13.4228
ANGPT2	0	genome.wustl.edu	37	8	6378797	6378798	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	6378797	6378798	-	T	INS	ANGPT2	ENST00000325203	human	ensembl	74_37	-1	known	frame_shift_ins	c.701_700	p.I234fs	0.159:0.004	NULL	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	ANGPT2	HGNC	ENSG00000091879				56	0	0	98	10	9.25926
MTFR1	0	genome.wustl.edu	37	8	66620234	66620237	+	Frame_Shift_Del	DEL	AGAG	AGAG	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	AGAG	AGAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	66620234	66620237	AGAG	-	DEL	MTFR1	ENST00000262146	human	ensembl	74_37	+1	known	frame_shift_del	c.921_924	p.R309fs	0.994:0.993:0.944:0.308	NULL	pfam_Mtfr1	-	no_errors	MTFR1	HGNC	ENSG00000066855				159	0	0	138	11	7.38255
SULF1	0	genome.wustl.edu	37	8	70488249	70488249	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	8	70488249	70488249	G	-	DEL	SULF1	ENST00000260128	human	ensembl	74_37	+1	known	frame_shift_del	c.217	p.A75fs	0.999	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	pfam_Sulfatase,pfam_Extracellular_sulfatase_C,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	-	no_errors	SULF1	HGNC	ENSG00000137573				45	0	0	34	8	19.0476
C9orf152	0	genome.wustl.edu	37	9	112963554	112963554	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	9	112963554	112963554	G	-	DEL	C9orf152	ENST00000400613	human	ensembl	74_37	-1	known	frame_shift_del	c.394	p.Q132fs	0.993	NULL	NULL	-	no_errors	C9orf152	HGNC	ENSG00000188959				155	0	0	106	23	17.8295
COL27A1	0	genome.wustl.edu	37	9	117008145	117008145	+	Splice_Site	DEL	G	G	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	9	117008145	117008145	G	-	DEL	COL27A1	ENST00000356083	human	ensembl	74_37	+1	known	splice_site_del	c.2935-1	e24-1	1.000	-	-	-	no_errors	COL27A1	HGNC	ENSG00000196739				52	0	0	25	8	24.2424
PDCL	0	genome.wustl.edu	37	9	125582805	125582805	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	9	125582805	125582805	C	-	DEL	PDCL	ENST00000259467	human	ensembl	74_37	-1	known	frame_shift_del	c.465	p.Q157fs	0.974	pfam_Phosducin_thioredoxin-like_dom,superfamily_Thioredoxin-like_fold	pfam_Phosducin_thioredoxin-like_dom,superfamily_Thioredoxin-like_fold,prints_Phosducin	-	no_errors	PDCL	HGNC	ENSG00000136940				98	0	0	55	7	11.2903
TTC16	0	genome.wustl.edu	37	9	130491862	130491863	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	9	130491862	130491863	-	A	INS	TTC16	ENST00000373289	human	ensembl	74_37	+1	known	frame_shift_ins	c.1767_1768	p.S591fs	0.701:0.167	NULL	pfam_TPR_2,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC16	HGNC	ENSG00000167094				49	0	0	37	10	21.2766
CERCAM	0	genome.wustl.edu	37	9	131186544	131186544	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	9	131186544	131186544	C	-	DEL	CERCAM	ENST00000372838	human	ensembl	74_37	+1	known	frame_shift_del	c.554	p.Q187fs	1.000	NULL	pfam_Glyco_trans_25	-	no_errors	CERCAM	HGNC	ENSG00000167123				82	0	0	55	13	19.1176
TTF1	0	genome.wustl.edu	37	9	135277388	135277388	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	9	135277388	135277388	T	-	DEL	TTF1	ENST00000334270	human	ensembl	74_37	-1	known	frame_shift_del	c.821	p.K274fs	0.001	NULL	superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	TTF1	HGNC	ENSG00000125482				106	0	0	50	12	19.3548
SLC2A6	0	genome.wustl.edu	37	9	136343522	136343522	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	9	136343522	136343522	T	-	DEL	SLC2A6	ENST00000371899	human	ensembl	74_37	-1	known	frame_shift_del	c.109	p.R37fs	0.998	superfamily_MFS_dom_general_subst_transpt,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A6	HGNC	ENSG00000160326				145	0	0	74	18	19.5652
TUBB4B	0	genome.wustl.edu	37	9	140137117	140137119	+	In_Frame_Del	DEL	CCT	CCT	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	CCT	CCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	9	140137117	140137119	CCT	-	DEL	TUBB4B	ENST00000340384	human	ensembl	74_37	+1	known	in_frame_del	c.447_449	p.L151in_frame_del	0.999:1.000:1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Tubulin,prints_Epsilon_tubulin,prints_Alpha_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB4B	HGNC	ENSG00000188229				83	0	0	49	12	19.6721
PTPLAD2	0	genome.wustl.edu	37	9	21007045	21007046	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	9	21007045	21007046	-	T	INS	PTPLAD2	ENST00000495827	human	ensembl	74_37	-1	known	frame_shift_ins	c.690_689	p.K231fs	1.000:1.000	NULL	pfam_Tyr_Pase-like_PTPLA	-	no_errors	PTPLAD2	HGNC	ENSG00000188921				70	0	0	34	9	20.9302
FAM214B	0	genome.wustl.edu	37	9	35107832	35107832	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	9	35107832	35107832	G	-	DEL	FAM214B	ENST00000322813	human	ensembl	74_37	-1	known	frame_shift_del	c.440	p.P147fs	0.925	NULL	NULL	-	no_errors	FAM214B	HGNC	ENSG00000005238				48	0	0	26	7	21.2121
JAK2	0	genome.wustl.edu	37	9	5050791	5050792	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	9	5050791	5050792	-	A	INS	JAK2	ENST00000381652	human	ensembl	74_37	+1	known	frame_shift_ins	c.574_575	p.N193fs	1.000:1.000	superfamily_FERM_central,smart_Band_41_domain,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain,pfscan_SH2,pfscan_Prot_kinase_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak2,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	JAK2	HGNC	ENSG00000096968				61	0	0	45	10	18.1818
JAK2	0	genome.wustl.edu	37	9	5066768	5066768	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	9	5066768	5066768	T	-	DEL	JAK2	ENST00000381652	human	ensembl	74_37	+1	known	frame_shift_del	c.1305	p.L437fs	0.995	pfam_SH2,smart_SH2,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_SH2,prints_Tyr_kinase_non-rcpt_Jak2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain,pfscan_SH2,pfscan_Prot_kinase_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak2,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	JAK2	HGNC	ENSG00000096968				33	0	0	18	6	25
RANBP6	0	genome.wustl.edu	37	9	6012690	6012690	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	9	6012690	6012690	T	-	DEL	RANBP6	ENST00000259569	human	ensembl	74_37	-1	known	frame_shift_del	c.2918	p.N973fs	1.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	RANBP6	HGNC	ENSG00000137040				80	0	0	43	12	21.8182
ERCC6L2	0	genome.wustl.edu	37	9	98774880	98774880	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	9	98774880	98774880	T	-	DEL	ERCC6L2	ENST00000407474	human	ensembl	74_37	+1	known	frame_shift_del	c.991	p.F332fs	0.000	NULL	NULL	-	no_errors	ERCC6L2	HGNC	ENSG00000182150				77	0	0	39	15	27.7778
IRS4	0	genome.wustl.edu	37	X	107977803	107977803	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	X	107977803	107977803	C	-	DEL	IRS4	ENST00000372129	human	ensembl	74_37	-1	known	frame_shift_del	c.1772	p.G591fs	0.016	NULL	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1,prints_Insln_rcpt_S1	-	no_errors	IRS4	HGNC	ENSG00000133124				260	0	0	97	29	23.0159
USP26	0	genome.wustl.edu	37	X	132160413	132160413	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	X	132160413	132160413	T	-	DEL	USP26	ENST00000370832	human	ensembl	74_37	-1	known	frame_shift_del	c.1836	p.G613fs	0.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP26	HGNC	ENSG00000134588				51	0	0	26	10	27.7778
KDM6A	0	genome.wustl.edu	37	X	44941988	44941988	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4257-01A-01D-1126-08	TCGA-BR-4257-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	936def52-8689-403a-97f4-3dda9f05feb1	7b9f4212-c55d-40c5-9fa9-c8b2713cf775	X	44941988	44941988	A	-	DEL	KDM6A	ENST00000382899	human	ensembl	74_37	+1	known	frame_shift_del	c.3259	p.T1088fs	1.000	NULL	pfam_JmjC_dom,pfam_TPR_1,smart_TPR_repeat,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	KDM6A	HGNC	ENSG00000147050				60	0	0	26	6	18.75
