Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
VCAM1	0	genome.wustl.edu	37	1	101186193	101186193	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	101186193	101186193	A	G	SNP	VCAM1	ENST00000294728	human	ensembl	74_37	+1	known	missense	c.226	p.T76A	0.860	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_C2-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom,prints_VCAM-1,prints_ICAM_VCAM_N	-	no_errors	VCAM1	HGNC	ENSG00000162692				82	0	0	46	31	40.2597
LRIF1	0	genome.wustl.edu	37	1	111494604	111494604	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	111494604	111494604	G	A	SNP	LRIF1	ENST00000369763	human	ensembl	74_37	-1	known	missense	c.902	p.T301M	0.851	NULL	NULL	-	no_errors	LRIF1	HGNC	ENSG00000121931				72	0	0	42	22	34.375
CHIAP2	0	genome.wustl.edu	37	1	111826726	111826726	+	RNA	SNP	G	G	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	111826726	111826726	G	T	SNP	CHIAP2	ENST00000369743	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.061	-	-	-	no_errors	CHIAP2	HGNC	ENSG00000203878				22	0	0	14	3	17.6471
MOV10	0	genome.wustl.edu	37	1	113237103	113237103	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	113237103	113237103	A	G	SNP	MOV10	ENST00000357443	human	ensembl	74_37	+1	known	missense	c.1324	p.T442A	1.000	NULL	superfamily_P-loop_NTPase	-	no_errors	MOV10	HGNC	ENSG00000155363				43	0	0	32	9	21.9512
PPM1J	0	genome.wustl.edu	37	1	113253964	113253964	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	113253964	113253964	G	T	SNP	PPM1J	ENST00000309276	human	ensembl	74_37	-1	known	missense	c.970	p.L324I	1.000	superfamily_PP2C-like_dom,smart_PP2C-like_dom	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	-	no_errors	PPM1J	HGNC	ENSG00000155367				12	0	0	13	4	23.5294
PRAMEF2	0	genome.wustl.edu	37	1	12920127	12920127	+	Splice_Site	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	12920127	12920127	G	A	SNP	PRAMEF2	ENST00000240189	human	ensembl	74_37	+1	known	splice_site	c.866+1	e2+1	0.094	-	-	-	no_errors	PRAMEF2	HGNC	ENSG00000120952				146	0	0	101	40	28.3688
OTUD7B	0	genome.wustl.edu	37	1	149916793	149916793	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	149916793	149916793	C	T	SNP	OTUD7B	ENST00000369135	human	ensembl	74_37	-1	known	missense	c.1495	p.A499T	1.000	NULL	pfam_OTU,superfamily_UBA-like,smart_Znf_A20,pfscan_OTU,pfscan_Znf_A20	-	no_errors	OTUD7B	HGNC	ENSG00000163113				126	0	0	71	53	42.7419
MIR554	0	genome.wustl.edu	37	1	151518351	151518351	+	RNA	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	151518351	151518351	T	C	SNP	MIR554	ENST00000384874	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	MIR554	HGNC	ENSG00000207606				36	0	0	16	6	27.2727
TCHH	0	genome.wustl.edu	37	1	152082434	152082434	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	152082434	152082434	G	A	SNP	TCHH	ENST00000368804	human	ensembl	74_37	-1	known	nonsense	c.3259	p.Q1087*	0.003	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	TCHH	HGNC	ENSG00000159450				95	0	0	57	26	31.3253
HRNR	0	genome.wustl.edu	37	1	152188549	152188549	+	Silent	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	152188549	152188549	G	A	SNP	HRNR	ENST00000368801	human	ensembl	74_37	-1	known	silent	c.5556	p.S1852	0.001	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	HRNR	HGNC	ENSG00000197915				278	0	0	250	46	15.5405
KCNN3	0	genome.wustl.edu	37	1	154698452	154698452	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	154698452	154698452	T	A	SNP	KCNN3	ENST00000271915	human	ensembl	74_37	-1	novel	missense	c.1641	p.E547D	1.000	superfamily_CaM-bd_dom	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_2pore_dom_K_chnl_dom,superfamily_CaM-bd_dom,prints_K_chnl_Ca-activ_SK	-	no_errors	KCNN3	HGNC	ENSG00000143603				33	0	0	17	12	41.3793
THBS3	0	genome.wustl.edu	37	1	155168382	155168382	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	155168382	155168382	C	A	SNP	THBS3	ENST00000368378	human	ensembl	74_37	-1	known	missense	c.1892	p.G631V	1.000	pfam_Thrombospondin_3-like_rpt	pfam_Thrombospondin_C,pfam_Thbs/COMP_coiled-coil,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	THBS3	HGNC	ENSG00000169231				72	0	0	61	35	36.4583
HCN3	0	genome.wustl.edu	37	1	155255714	155255714	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	155255714	155255714	G	A	SNP	HCN3	ENST00000368358	human	ensembl	74_37	+1	known	missense	c.1436	p.G479D	1.000	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	pfam_Ion_trans_N,pfam_Ion_trans_dom,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	HCN3	HGNC	ENSG00000143630				43	0	0	24	22	47.8261
HCN3	0	genome.wustl.edu	37	1	155257084	155257084	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	155257084	155257084	G	A	SNP	HCN3	ENST00000368358	human	ensembl	74_37	+1	known	missense	c.1598	p.R533H	1.000	superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	pfam_Ion_trans_N,pfam_Ion_trans_dom,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	HCN3	HGNC	ENSG00000143630				53	0	0	47	31	39.7436
FCRL4	0	genome.wustl.edu	37	1	157557696	157557696	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	157557696	157557696	T	C	SNP	FCRL4	ENST00000271532	human	ensembl	74_37	-1	known	missense	c.521	p.N174S	0.000	smart_Ig_sub,smart_Ig_sub2	pfam_Immunoglobulin,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCRL4	HGNC	ENSG00000163518				28	0	0	19	9	32.1429
CELA2B	0	genome.wustl.edu	37	1	15813917	15813917	+	Silent	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	15813917	15813917	C	T	SNP	CELA2B	ENST00000375910	human	ensembl	74_37	+1	known	silent	c.777	p.N259	0.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	CELA2B	HGNC	ENSG00000215704				137	0	0	89	36	28.8
OR10T2	0	genome.wustl.edu	37	1	158368769	158368769	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	158368769	158368769	A	G	SNP	OR10T2	ENST00000334438	human	ensembl	74_37	-1	known	missense	c.488	p.L163P	0.134	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10T2	HGNC	ENSG00000186306				87	0	0	78	23	22.7723
DARC	0	genome.wustl.edu	37	1	159176186	159176186	+	Silent	SNP	G	G	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	159176186	159176186	G	T	SNP	DARC	ENST00000368121	human	ensembl	74_37	+1	known	silent	c.963	p.L321	0.005	NULL	prints_Duffy_chemokine_rcpt	-	no_errors	DARC	HGNC	ENSG00000213088				282	0	0	155	118	43.2234
RSC1A1	0	genome.wustl.edu	37	1	15986909	15986909	+	Silent	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	15986909	15986909	A	G	SNP	RSC1A1	ENST00000345034	human	ensembl	74_37	+1	known	silent	c.546	p.K182	0.000	NULL	superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	RSC1A1	HGNC	ENSG00000215695				69	0	0	50	20	28.5714
CDK11A	0	genome.wustl.edu	37	1	1638926	1638926	+	Silent	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	1638926	1638926	G	A	SNP	CDK11A	ENST00000404249	human	ensembl	74_37	-1	known	silent	c.1167	p.G389	0.986	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK11A	HGNC	ENSG00000008128				29	0	0	12	9	42.8571
CROCCP2	0	genome.wustl.edu	37	1	16945566	16945566	+	RNA	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	16945566	16945566	C	T	SNP	CROCCP2	ENST00000412962	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.977	-	-	-	no_errors	CROCCP2	HGNC	ENSG00000215908				279	0	0	253	34	11.8467
FMO4	0	genome.wustl.edu	37	1	171310826	171310826	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	171310826	171310826	G	A	SNP	FMO4	ENST00000367749	human	ensembl	74_37	+1	known	missense	c.1525	p.A509T	0.009	pfam_Flavin_mOase-like,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase_4,prints_Flavin_mOase_1,prints_Flavin_mOase_3	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase,prints_Flavin_mOase_4,prints_Flavin_mOase_1,prints_Flavin_mOase_3	-	no_errors	FMO4	HGNC	ENSG00000076258				41	0	0	39	4	9.30233
TNN	0	genome.wustl.edu	37	1	175067511	175067511	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	175067511	175067511	G	C	SNP	TNN	ENST00000239462	human	ensembl	74_37	+1	known	missense	c.1899	p.E633D	0.997	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_Fibronectin_type3	-	no_errors	TNN	HGNC	ENSG00000120332				134	0	0	66	46	41.0714
CACNA1E	0	genome.wustl.edu	37	1	181680124	181680124	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	181680124	181680124	C	T	SNP	CACNA1E	ENST00000367573	human	ensembl	74_37	+1	known	nonsense	c.1090	p.R364*	1.000	prints_VDCCAlpha1	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216				85	0	0	58	34	36.9565
PRG4	0	genome.wustl.edu	37	1	186276875	186276875	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	186276875	186276875	A	G	SNP	PRG4	ENST00000445192	human	ensembl	74_37	+1	known	missense	c.2024	p.N675S	0.000	NULL	pfam_Somatomedin_B_dom,pfam_Hemopexin-like_repeat,superfamily_Hemopexin-like_dom,smart_Somatomedin_B_dom,smart_Hemopexin-like_repeat,prints_Somatomedin_B_chordata,pfscan_Somatomedin_B_dom	-	no_errors	PRG4	HGNC	ENSG00000116690				78	0	0	49	20	28.9855
PTPRC	0	genome.wustl.edu	37	1	198711490	198711490	+	Silent	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	198711490	198711490	A	G	SNP	PTPRC	ENST00000442510	human	ensembl	74_37	+1	known	silent	c.2691	p.Q897	1.000	pirsf_Leukocyte_common_ag,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	pirsf_Leukocyte_common_ag,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Leukocyte_common_ag,pfam_PTP_recept_N,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRC	HGNC	ENSG00000081237				95	0	0	106	10	8.62069
FMOD	0	genome.wustl.edu	37	1	203316677	203316677	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	203316677	203316677	C	A	SNP	FMOD	ENST00000354955	human	ensembl	74_37	-1	known	missense	c.722	p.G241V	0.033	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	FMOD	HGNC	ENSG00000122176				131	1	0.757576	86	51	37.2263
GOLT1A	0	genome.wustl.edu	37	1	204168355	204168355	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	204168355	204168355	C	A	SNP	GOLT1A	ENST00000308302	human	ensembl	74_37	-1	known	missense	c.328	p.G110C	0.999	NULL	pfam_Vesicle_transpt_Got1/SFT2	-	no_errors	GOLT1A	HGNC	ENSG00000174567				8	0	0	8	5	38.4615
LRRN2	0	genome.wustl.edu	37	1	204588803	204588803	+	Silent	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	204588803	204588803	C	T	SNP	LRRN2	ENST00000367175	human	ensembl	74_37	-1	known	silent	c.318	p.S106	0.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRN2	HGNC	ENSG00000170382				98	0	0	53	32	37.6471
TMCC2	0	genome.wustl.edu	37	1	205241213	205241213	+	Silent	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	205241213	205241213	C	T	SNP	TMCC2	ENST00000358024	human	ensembl	74_37	+1	known	silent	c.2091	p.S697	0.995	pfam_Predicted_TM_coiled-coil_2	pfam_Predicted_TM_coiled-coil_2,superfamily_t-SNARE	-	no_errors	TMCC2	HGNC	ENSG00000133069				93	0	0	53	20	27.3973
SLC41A1	0	genome.wustl.edu	37	1	205760599	205760599	+	RNA	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	205760599	205760599	G	A	SNP	SLC41A1	ENST00000468057	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SLC41A1	HGNC	ENSG00000133065				30	0	0	14	7	33.3333
CR1	0	genome.wustl.edu	37	1	207787753	207787753	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	207787753	207787753	C	T	SNP	CR1	ENST00000367049	human	ensembl	74_37	+1	known	nonsense	c.6580	p.R2194*	0.477	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR1	HGNC	ENSG00000203710				73	0	0	59	10	14.4928
CR1	0	genome.wustl.edu	37	1	207787831	207787831	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	207787831	207787831	G	T	SNP	CR1	ENST00000367049	human	ensembl	74_37	+1	known	nonsense	c.6658	p.E2220*	1.000	superfamily_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR1	HGNC	ENSG00000203710				81	0	0	67	9	11.8421
CENPF	0	genome.wustl.edu	37	1	214832209	214832209	+	Silent	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	214832209	214832209	G	A	SNP	CENPF	ENST00000366955	human	ensembl	74_37	+1	known	silent	c.8979	p.P2993	0.003	pfam_CenpF/LEK1_Rb-prot-bd	pfam_Centromere_CenpF_N,pfam_Centromere_CenpF_leu-rich_rpt,pfam_CenpF/LEK1_Rb-prot-bd	-	no_errors	CENPF	HGNC	ENSG00000117724				125	1	0.793651	70	44	38.5965
USH2A	0	genome.wustl.edu	37	1	215916618	215916618	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	215916618	215916618	T	G	SNP	USH2A	ENST00000366943	human	ensembl	74_37	-1	known	missense	c.11449	p.T3817P	0.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781				83	0	0	65	36	35.6436
USH2A	0	genome.wustl.edu	37	1	216595572	216595572	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	216595572	216595572	A	C	SNP	USH2A	ENST00000366943	human	ensembl	74_37	-1	known	missense	c.107	p.L36R	0.677	NULL	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781				93	0	0	80	5	5.88235
LEFTY2	0	genome.wustl.edu	37	1	226125285	226125285	+	Silent	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	226125285	226125285	C	T	SNP	LEFTY2	ENST00000366820	human	ensembl	74_37	-1	known	silent	c.957	p.S319	0.282	smart_TGF-b_C,pirsf_LRDF,prints_LRDF	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C,pirsf_LRDF,prints_LRDF	-	no_errors	LEFTY2	HGNC	ENSG00000143768				43	0	0	23	8	25.8065
ADCK3	0	genome.wustl.edu	37	1	227174190	227174190	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	227174190	227174190	C	A	SNP	ADCK3	ENST00000366777	human	ensembl	74_37	+1	known	missense	c.1696	p.L566M	1.000	NULL	pfam_UbiB_dom,superfamily_Kinase-like_dom	-	no_errors	ADCK3	HGNC	ENSG00000163050				81	0	0	60	9	13.0435
JMJD4	0	genome.wustl.edu	37	1	227920624	227920624	+	Silent	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	227920624	227920624	G	A	SNP	JMJD4	ENST00000366758	human	ensembl	74_37	-1	known	silent	c.1065	p.S355	0.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	JMJD4	HGNC	ENSG00000081692				43	0	0	30	14	31.8182
LYST	0	genome.wustl.edu	37	1	235914579	235914579	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	235914579	235914579	G	A	SNP	LYST	ENST00000389793	human	ensembl	74_37	-1	known	missense	c.7711	p.L2571F	0.763	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669				114	0	0	85	42	33.0709
E2F2	0	genome.wustl.edu	37	1	23836471	23836471	+	Silent	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	23836471	23836471	T	C	SNP	E2F2	ENST00000361729	human	ensembl	74_37	-1	known	silent	c.1215	p.P405	0.062	NULL	pfam_E2F_TDP	-	no_errors	E2F2	HGNC	ENSG00000007968				21	0	0	16	8	33.3333
TCEB3	0	genome.wustl.edu	37	1	24083515	24083515	+	Silent	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	24083515	24083515	T	C	SNP	TCEB3	ENST00000418390	human	ensembl	74_37	+1	known	silent	c.2235	p.P745	0.000	NULL	pfam_RNA_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,pfscan_F-box_dom	-	no_errors	TCEB3	HGNC	ENSG00000011007				180	0	0	113	70	38.2514
GALE	0	genome.wustl.edu	37	1	24125170	24125170	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	24125170	24125170	G	A	SNP	GALE	ENST00000374497	human	ensembl	74_37	-1	known	missense	c.172	p.R58C	0.848	pfam_Epimerase_deHydtase,pfam_3Beta_OHSteriod_DH/Estase,pfam_dTDP_dehydrorham_reduct,pfam_Polysac_CapD-like,pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,tigrfam_GalE	pfam_Epimerase_deHydtase,pfam_3Beta_OHSteriod_DH/Estase,pfam_dTDP_dehydrorham_reduct,pfam_Polysac_CapD-like,pfam_DH_sc/Rdtase_SDR,pfam_Male_sterile_NAD-bd,pfam_PKS_KR,prints_Nuc_sugar_epim,tigrfam_GalE	-	no_errors	GALE	HGNC	ENSG00000117308				36	0	0	12	9	42.8571
MYOM3	0	genome.wustl.edu	37	1	24408528	24408528	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	24408528	24408528	G	A	SNP	MYOM3	ENST00000330966	human	ensembl	74_37	-1	known	missense	c.2246	p.A749V	0.423	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYOM3	HGNC	ENSG00000142661				19	0	0	14	12	46.1538
OR2L3	0	genome.wustl.edu	37	1	248224181	248224181	+	Silent	SNP	C	C	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	248224181	248224181	C	A	SNP	OR2L3	ENST00000359959	human	ensembl	74_37	+1	known	silent	c.198	p.S66	0.006	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2L3	HGNC	ENSG00000198128				316	0	0	209	117	35.8896
OR2L13	0	genome.wustl.edu	37	1	248263381	248263381	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	248263381	248263381	A	G	SNP	OR2L13	ENST00000358120	human	ensembl	74_37	+1	known	missense	c.704	p.K235R	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2L13	HGNC	ENSG00000196071				87	0	0	53	42	44.2105
MMEL1	0	genome.wustl.edu	37	1	2526293	2526293	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	2526293	2526293	G	A	SNP	MMEL1	ENST00000378412	human	ensembl	74_37	-1	known	nonsense	c.1624	p.Q542*	1.000	NULL	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	MMEL1	HGNC	ENSG00000142606				33	0	0	26	18	40.9091
PDIK1L	0	genome.wustl.edu	37	1	26448694	26448694	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	26448694	26448694	G	T	SNP	PDIK1L	ENST00000374269	human	ensembl	74_37	+1	known	missense	c.652	p.A218S	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	PDIK1L	HGNC	ENSG00000175087				81	0	0	58	43	42.5743
CEP85	0	genome.wustl.edu	37	1	26582097	26582097	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	26582097	26582097	G	A	SNP	CEP85	ENST00000252992	human	ensembl	74_37	+1	known	missense	c.644	p.S215N	0.319	NULL	NULL	-	no_errors	CEP85	HGNC	ENSG00000130695				100	0	0	60	40	40
ADC	0	genome.wustl.edu	37	1	33585749	33585749	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	33585749	33585749	T	C	SNP	ADC	ENST00000373441	human	ensembl	74_37	+1	known	missense	c.1409	p.V470A	1.000	NULL	pfam_De-COase2_N,pfam_De-COase2_C,superfamily_Ala_racemase/Decarboxylase_C,prints_Orn_de-COase,prints_Orn/DAP/Arg_de-COase	-	no_errors	ADC	HGNC	ENSG00000142920				39	0	0	31	9	22.5
PHC2	0	genome.wustl.edu	37	1	33841025	33841025	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	33841025	33841025	C	T	SNP	PHC2	ENST00000419414	human	ensembl	74_37	-1	known	missense	c.116	p.R39H	0.984	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM,pfscan_Znf_FCS	-	no_errors	PHC2	HGNC	ENSG00000134686				41	0	0	27	13	32.5
CSMD2	0	genome.wustl.edu	37	1	34006749	34006749	+	Silent	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	34006749	34006749	T	C	SNP	CSMD2	ENST00000373381	human	ensembl	74_37	-1	known	silent	c.9438	p.G3146	0.133	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904				111	0	0	67	37	35.5769
CSMD2	0	genome.wustl.edu	37	1	34071015	34071015	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	34071015	34071015	C	A	SNP	CSMD2	ENST00000373381	human	ensembl	74_37	-1	known	missense	c.6399	p.R2133S	1.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904				50	0	0	45	4	8.16327
TP73	0	genome.wustl.edu	37	1	3638707	3638707	+	Silent	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	3638707	3638707	G	A	SNP	TP73	ENST00000378295	human	ensembl	74_37	+1	known	silent	c.552	p.A184	0.049	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_SAM_2,superfamily_p53-like_TF_DNA-bd,superfamily_SAM/pointed,superfamily_p53_tetrameristn,smart_SAM,prints_p53_tumour_suppressor	-	no_errors	TP73	HGNC	ENSG00000078900				48	0	0	42	18	30
ZC3H12A	0	genome.wustl.edu	37	1	37948856	37948856	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	37948856	37948856	G	A	SNP	ZC3H12A	ENST00000373087	human	ensembl	74_37	+1	known	missense	c.1444	p.A482T	0.001	NULL	pfam_RNase_Zc3h12	-	no_errors	ZC3H12A	HGNC	ENSG00000163874				48	0	0	44	26	37.1429
BMP8B	0	genome.wustl.edu	37	1	40230378	40230378	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	40230378	40230378	G	T	SNP	BMP8B	ENST00000372827	human	ensembl	74_37	-1	known	missense	c.785	p.P262H	0.633	prints_Inhibin_asu	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C,prints_Inhibin_asu	-	no_errors	BMP8B	HGNC	ENSG00000116985				36	0	0	35	9	20.4545
B4GALT2	0	genome.wustl.edu	37	1	44447544	44447544	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	44447544	44447544	A	G	SNP	B4GALT2	ENST00000309519	human	ensembl	74_37	+1	known	missense	c.584	p.H195R	1.000	pfam_Galactosyl_T_C	pfam_Galactosyl_T_C,prints_Galactosyl_T	-	no_errors	B4GALT2	HGNC	ENSG00000117411				47	0	0	27	14	34.1463
ZSWIM5	0	genome.wustl.edu	37	1	45671791	45671791	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	45671791	45671791	C	T	SNP	ZSWIM5	ENST00000359600	human	ensembl	74_37	-1	known	missense	c.232	p.A78T	1.000	NULL	pfscan_Znf_SWIM	-	no_errors	ZSWIM5	HGNC	ENSG00000162415				8	0	0	4	8	66.6667
EFCAB14	0	genome.wustl.edu	37	1	47149030	47149030	+	Silent	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	47149030	47149030	T	C	SNP	EFCAB14	ENST00000371933	human	ensembl	74_37	-1	known	silent	c.1254	p.P418	0.000	NULL	pfscan_EF_hand_dom	-	no_errors	EFCAB14	HGNC	ENSG00000159658				83	0	0	46	31	40.2597
FGGY	0	genome.wustl.edu	37	1	59811947	59811947	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	59811947	59811947	G	A	SNP	FGGY	ENST00000303721	human	ensembl	74_37	+1	known	nonsense	c.342	p.W114*	1.000	pfam_Carb_kinase_FGGY_N,tigrfam_Carb_kinase_FGGY-rel	pfam_Carb_kinase_FGGY_C,pfam_Carb_kinase_FGGY_N,tigrfam_Carb_kinase_FGGY-rel	-	no_errors	FGGY	HGNC	ENSG00000172456				62	0	0	54	13	19.403
CHD5	0	genome.wustl.edu	37	1	6203990	6203990	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	6203990	6203990	C	A	SNP	CHD5	ENST00000262450	human	ensembl	74_37	-1	known	nonsense	c.1936	p.E646*	1.000	superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD5	HGNC	ENSG00000116254				80	0	0	43	32	42.6667
KANK4	0	genome.wustl.edu	37	1	62718875	62718875	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	62718875	62718875	C	T	SNP	KANK4	ENST00000371153	human	ensembl	74_37	-1	known	missense	c.2546	p.C849Y	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_KN_motif,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KANK4	HGNC	ENSG00000132854				63	0	0	46	21	31.3433
RERE	0	genome.wustl.edu	37	1	8424823	8424823	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	8424823	8424823	C	T	SNP	RERE	ENST00000337907	human	ensembl	74_37	-1	known	missense	c.1523	p.R508H	1.000	pfam_Znf_GATA,smart_Znf_GATA	pfam_Atrophin-like,pfam_BAH_dom,pfam_ELM2_dom,pfam_Znf_GATA,superfamily_Homeodomain-like,smart_BAH_dom,smart_SANT/Myb,smart_Znf_GATA,pfscan_BAH_dom,pfscan_ELM2_dom	-	no_errors	RERE	HGNC	ENSG00000142599				21	0	0	23	11	32.3529
TTLL7	0	genome.wustl.edu	37	1	84373183	84373183	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	84373183	84373183	G	T	SNP	TTLL7	ENST00000260505	human	ensembl	74_37	-1	known	missense	c.1948	p.H650N	0.188	NULL	pfam_TTL/TTLL_fam	-	no_errors	TTLL7	HGNC	ENSG00000137941				105	1	0.943396	62	38	38
MCOLN2	0	genome.wustl.edu	37	1	85424271	85424271	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	85424271	85424271	T	G	SNP	MCOLN2	ENST00000370608	human	ensembl	74_37	-1	known	missense	c.352	p.S118R	1.000	NULL	pfam_PKD1_2_channel	-	no_errors	MCOLN2	HGNC	ENSG00000153898				87	0	0	81	35	30.1724
GBP2	0	genome.wustl.edu	37	1	89586917	89586917	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	89586917	89586917	T	C	SNP	GBP2	ENST00000370466	human	ensembl	74_37	-1	known	missense	c.227	p.K76R	1.000	pfam_Guanylate-bd_N,superfamily_P-loop_NTPase	pfam_Guanylate-bd_C,pfam_Guanylate-bd_N,superfamily_Guanylate-bd_C,superfamily_P-loop_NTPase	-	no_errors	GBP2	HGNC	ENSG00000162645				147	0	0	75	43	36.4407
GLMN	0	genome.wustl.edu	37	1	92754658	92754658	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	92754658	92754658	T	C	SNP	GLMN	ENST00000370360	human	ensembl	74_37	-1	known	missense	c.445	p.T149A	0.974	pfam_YAP-bd/Alf4/glomulin	pfam_YAP-bd/Alf4/glomulin	-	no_errors	GLMN	HGNC	ENSG00000174842				82	0	0	55	43	43.8776
COX15	0	genome.wustl.edu	37	10	101473179	101473179	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	10	101473179	101473179	T	G	SNP	COX15	ENST00000370483	human	ensembl	74_37	-1	known	missense	c.1159	p.N387H	0.005	NULL	pfam_HemeA_syn,superfamily_Trypsin-like_Pept_dom	-	no_errors	COX15	HGNC	ENSG00000014919				44	0	0	29	16	35.5556
DNMBP	0	genome.wustl.edu	37	10	101731839	101731839	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	10	101731839	101731839	G	A	SNP	DNMBP	ENST00000342239	human	ensembl	74_37	-1	known	missense	c.43	p.P15S	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_BAR_dom,pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_BAR_dom,pfscan_BAR_dom,pfscan_SH3_domain,pfscan_DH-domain,prints_p67phox,prints_Spectrin_alpha_SH3	-	no_errors	DNMBP	HGNC	ENSG00000107554				116	1	0.854701	103	6	5.50459
SCD	0	genome.wustl.edu	37	10	102120550	102120550	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	10	102120550	102120550	C	T	SNP	SCD	ENST00000370355	human	ensembl	74_37	+1	known	missense	c.940	p.R314C	1.000	NULL	pfam_Fatty_acid_desaturase-1,prints_Fatty_acid_desaturase-1_core	-	no_errors	SCD	HGNC	ENSG00000099194				103	0	0	65	41	38.6792
SFXN2	0	genome.wustl.edu	37	10	104489523	104489523	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	10	104489523	104489523	T	C	SNP	SFXN2	ENST00000369893	human	ensembl	74_37	+1	known	missense	c.551	p.V184A	1.000	pfam_Mtc,tigrfam_Mtc	pfam_Mtc,tigrfam_Mtc	-	no_errors	SFXN2	HGNC	ENSG00000156398				57	0	0	30	19	38.7755
PDCD11	0	genome.wustl.edu	37	10	105174906	105174906	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	10	105174906	105174906	C	T	SNP	PDCD11	ENST00000369797	human	ensembl	74_37	+1	known	missense	c.1516	p.R506W	1.000	pfam_Rbsml_prot_S1_RNA-bd_dom,superfamily_NA-bd_OB-fold,smart_RNA-binding_domain_S1,pfscan_Rbsml_prot_S1_RNA-bd_dom	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_Suf,superfamily_NA-bd_OB-fold,smart_RNA-binding_domain_S1,smart_HAT,pfscan_TPR-contain_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom,prints_Ribosomal_S1	-	no_errors	PDCD11	HGNC	ENSG00000148843				43	0	0	20	9	31.0345
COL17A1	0	genome.wustl.edu	37	10	105823514	105823514	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	10	105823514	105823514	A	G	SNP	COL17A1	ENST00000353479	human	ensembl	74_37	-1	known	missense	c.829	p.S277P	0.998	NULL	pfam_Collagen	-	no_errors	COL17A1	HGNC	ENSG00000065618				37	0	0	37	5	11.9048
TCF7L2	0	genome.wustl.edu	37	10	114925501	114925501	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	10	114925501	114925501	G	A	SNP	TCF7L2	ENST00000355995	human	ensembl	74_37	+1	known	missense	c.1630	p.A544T	1.000	NULL	pfam_CTNNB1-bd_N,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	TCF7L2	HGNC	ENSG00000148737				51	0	0	34	17	33.3333
GFRA1	0	genome.wustl.edu	37	10	118030461	118030461	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	10	118030461	118030461	C	A	SNP	GFRA1	ENST00000355422	human	ensembl	74_37	-1	known	missense	c.207	p.K69N	1.000	pfam_GDNF/GAS1,smart_GDNF/GAS1,pirsf_Glial_neurotroph_fac_rcpt_a1/2,prints_GDNF_rcpt_A1	pfam_GDNF/GAS1,smart_GDNF/GAS1,pirsf_Glial_neurotroph_fac_rcpt_a1/2,prints_GDNF_rcpt,prints_GDNF_rcpt_A1	-	no_errors	GFRA1	HGNC	ENSG00000151892				28	0	0	41	11	21.1538
PRLHR	0	genome.wustl.edu	37	10	120353797	120353797	+	Silent	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	10	120353797	120353797	G	A	SNP	PRLHR	ENST00000239032	human	ensembl	74_37	-1	known	silent	c.960	p.C320	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Prolrel_pep_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	PRLHR	HGNC	ENSG00000119973				52	0	0	25	19	43.1818
UPF2	0	genome.wustl.edu	37	10	12070793	12070793	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	10	12070793	12070793	G	A	SNP	UPF2	ENST00000356352	human	ensembl	74_37	-1	known	missense	c.1096	p.H366Y	1.000	pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold	pfam_MIF4G-like_typ-3,pfam_Up-fram_suppressor-2,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	-	no_errors	UPF2	HGNC	ENSG00000151461				71	0	0	45	24	34.7826
SFXN4	0	genome.wustl.edu	37	10	120925115	120925115	+	Silent	SNP	T	T	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	10	120925115	120925115	T	G	SNP	SFXN4	ENST00000355697	human	ensembl	74_37	-1	known	silent	c.45	p.L15	0.000	NULL	pfam_Mtc	-	no_errors	SFXN4	HGNC	ENSG00000183605				20	0	0	15	9	37.5
TACC2	0	genome.wustl.edu	37	10	123844834	123844834	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	10	123844834	123844834	A	C	SNP	TACC2	ENST00000334433	human	ensembl	74_37	+1	known	missense	c.2819	p.K940T	0.007	NULL	pfam_TACC	-	no_errors	TACC2	HGNC	ENSG00000138162				80	0	0	49	39	44.3182
TACC2	0	genome.wustl.edu	37	10	123903103	123903103	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	10	123903103	123903103	G	A	SNP	TACC2	ENST00000334433	human	ensembl	74_37	+1	known	missense	c.5716	p.A1906T	0.028	NULL	pfam_TACC	-	no_errors	TACC2	HGNC	ENSG00000138162				82	0	0	75	5	6.25
CAMK1D	0	genome.wustl.edu	37	10	12803039	12803039	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	10	12803039	12803039	C	T	SNP	CAMK1D	ENST00000378847	human	ensembl	74_37	+1	known	missense	c.392	p.A131V	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CAMK1D	HGNC	ENSG00000183049				52	0	0	41	14	25.4545
DOCK1	0	genome.wustl.edu	37	10	129172450	129172450	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	10	129172450	129172450	A	C	SNP	DOCK1	ENST00000280333	human	ensembl	74_37	+1	known	missense	c.3584	p.N1195T	0.960	superfamily_ARM-type_fold	pfam_DOCK_C,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,superfamily_Cyt_c-like_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK1	HGNC	ENSG00000150760				49	0	0	26	20	43.4783
MKI67	0	genome.wustl.edu	37	10	129905499	129905499	+	Silent	SNP	G	G	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	10	129905499	129905499	G	C	SNP	MKI67	ENST00000368654	human	ensembl	74_37	-1	known	silent	c.4605	p.G1535	0.000	pfam_K167R	pfam_K167R,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MKI67	HGNC	ENSG00000148773				278	0	0	196	112	36.3636
MKI67	0	genome.wustl.edu	37	10	129905503	129905503	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	10	129905503	129905503	G	A	SNP	MKI67	ENST00000368654	human	ensembl	74_37	-1	known	missense	c.4601	p.A1534V	0.000	pfam_K167R	pfam_K167R,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MKI67	HGNC	ENSG00000148773				278	0	0	199	107	34.9673
DPYSL4	0	genome.wustl.edu	37	10	134014458	134014458	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	10	134014458	134014458	C	T	SNP	DPYSL4	ENST00000338492	human	ensembl	74_37	+1	known	missense	c.1081	p.R361C	1.000	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	DPYSL4	HGNC	ENSG00000151640				31	0	0	22	13	37.1429
NEBL	0	genome.wustl.edu	37	10	21074772	21074772	+	Silent	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	10	21074772	21074772	G	A	SNP	NEBL	ENST00000377122	human	ensembl	74_37	-1	known	silent	c.2949	p.N983	0.987	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	NEBL	HGNC	ENSG00000078114				65	0	0	66	27	29.0323
ARMC4	0	genome.wustl.edu	37	10	28274045	28274045	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	10	28274045	28274045	C	G	SNP	ARMC4	ENST00000305242	human	ensembl	74_37	-1	known	missense	c.478	p.D160H	0.090	NULL	pfam_Armadillo,superfamily_ARM-type_fold,superfamily_GSKIP_dom,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMC4	HGNC	ENSG00000169126				25	0	0	11	10	47.619
ERCC6	0	genome.wustl.edu	37	10	50686483	50686483	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	10	50686483	50686483	G	A	SNP	ERCC6	ENST00000355832	human	ensembl	74_37	-1	known	nonsense	c.2203	p.R735*	1.000	pfam_SNF2_N,superfamily_P-loop_NTPase	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6	HGNC	ENSG00000225830				144	0	0	96	56	36.8421
PCDH15	0	genome.wustl.edu	37	10	55581859	55581859	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	10	55581859	55581859	T	C	SNP	PCDH15	ENST00000320301	human	ensembl	74_37	-1	known	missense	c.5627	p.Q1876R	0.417	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275				162	0	0	106	51	32.4841
PCDH15	0	genome.wustl.edu	37	10	55721625	55721625	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	10	55721625	55721625	T	C	SNP	PCDH15	ENST00000320301	human	ensembl	74_37	-1	known	missense	c.2896	p.R966G	0.957	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275				63	0	0	56	28	33.3333
FAM208B	0	genome.wustl.edu	37	10	5789072	5789072	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	10	5789072	5789072	A	G	SNP	FAM208B	ENST00000328090	human	ensembl	74_37	+1	known	missense	c.3688	p.T1230A	0.000	NULL	pfam_DUF3715,pfam_DUF3699	-	no_errors	FAM208B	HGNC	ENSG00000108021				90	0	0	77	44	36.3636
CTNNA3	0	genome.wustl.edu	37	10	68940246	68940246	+	Silent	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	10	68940246	68940246	A	G	SNP	CTNNA3	ENST00000373744	human	ensembl	74_37	-1	known	silent	c.876	p.T292	0.996	pfam_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA3	HGNC	ENSG00000183230				71	0	0	60	15	20
ADAMTS14	0	genome.wustl.edu	37	10	72489928	72489928	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	10	72489928	72489928	A	G	SNP	ADAMTS14	ENST00000373208	human	ensembl	74_37	+1	known	missense	c.1025	p.Q342R	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS14	HGNC	ENSG00000138316				39	0	0	21	13	38.2353
TTC18	0	genome.wustl.edu	37	10	75113397	75113397	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	10	75113397	75113397	G	C	SNP	TTC18	ENST00000310715	human	ensembl	74_37	-1	known	missense	c.167	p.A56G	1.000	NULL	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC18	HGNC	ENSG00000156042				51	0	0	38	23	37.7049
CNTN5	0	genome.wustl.edu	37	11	100211320	100211320	+	Silent	SNP	T	T	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	11	100211320	100211320	T	G	SNP	CNTN5	ENST00000279463	human	ensembl	74_37	+1	known	silent	c.2856	p.A952	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN5	HGNC	ENSG00000149972				55	0	0	29	18	38.2979
MSANTD4	0	genome.wustl.edu	37	11	105880317	105880317	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	11	105880317	105880317	C	T	SNP	MSANTD4	ENST00000301919	human	ensembl	74_37	-1	known	missense	c.983	p.R328H	1.000	NULL	NULL	-	no_errors	MSANTD4	HGNC	ENSG00000170903				105	0	0	85	14	14.1414
CTR9	0	genome.wustl.edu	37	11	10785739	10785739	+	Silent	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	11	10785739	10785739	T	C	SNP	CTR9	ENST00000361367	human	ensembl	74_37	+1	known	silent	c.1275	p.T425	0.813	pfscan_TPR-contain_dom	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CTR9	HGNC	ENSG00000198730				97	0	0	63	32	33.6842
KDELC2	0	genome.wustl.edu	37	11	108352801	108352801	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	11	108352801	108352801	A	C	SNP	KDELC2	ENST00000323468	human	ensembl	74_37	-1	known	missense	c.833	p.I278S	1.000	pfam_LipoPS_modifying,smart_LipoPS_modifying	pfam_LipoPS_modifying,pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,smart_LipoPS_modifying,pfscan_Filamin/ABP280_repeat-like	-	no_errors	KDELC2	HGNC	ENSG00000178202				146	0	0	83	55	39.8551
CRYAB	0	genome.wustl.edu	37	11	111780943	111780943	+	Silent	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	11	111780943	111780943	A	G	SNP	CRYAB	ENST00000533971	human	ensembl	74_37	-1	putative	silent	c.432	p.H144	0.000	NULL	pfam_Alpha-crystallin_N,pfam_a-crystallin/Hsp20_dom,superfamily_HSP20-like_chaperone,prints_Alpha-crystallin/HSP	-	no_errors	CRYAB	HGNC	ENSG00000109846				18	0	0	18	6	25
UBE4A	0	genome.wustl.edu	37	11	118244399	118244399	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	11	118244399	118244399	A	G	SNP	UBE4A	ENST00000431736	human	ensembl	74_37	+1	known	missense	c.1136	p.Q379R	1.000	pfam_Ub_conjug_fac_E4_core	pfam_Ub_conjug_fac_E4_core,pfam_Ubox_domain,smart_Ubox_domain	-	no_errors	UBE4A	HGNC	ENSG00000110344				43	0	0	42	9	17.6471
MCAM	0	genome.wustl.edu	37	11	119185613	119185613	+	Silent	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	11	119185613	119185613	G	A	SNP	MCAM	ENST00000264036	human	ensembl	74_37	-1	known	silent	c.330	p.D110	0.983	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Immunoglobulin,pfam_CD80_C2-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MCAM	HGNC	ENSG00000076706				47	0	0	23	18	43.9024
MICALCL	0	genome.wustl.edu	37	11	12315225	12315225	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	11	12315225	12315225	C	T	SNP	MICALCL	ENST00000256186	human	ensembl	74_37	+1	known	missense	c.247	p.P83S	0.882	NULL	pfam_DUF3585,smart_ProQ/FinO	-	no_errors	MICALCL	HGNC	ENSG00000133808				175	0	0	114	72	38.7097
OR10G4	0	genome.wustl.edu	37	11	123887010	123887010	+	Silent	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	11	123887010	123887010	C	T	SNP	OR10G4	ENST00000320891	human	ensembl	74_37	+1	known	silent	c.729	p.H243	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10G4	HGNC	ENSG00000254737				78	0	0	45	20	30.7692
TRPM5	0	genome.wustl.edu	37	11	2438983	2438983	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	11	2438983	2438983	G	A	SNP	TRPM5	ENST00000452833	human	ensembl	74_37	-1	known	missense	c.989	p.T330M	0.993	NULL	superfamily_Ankyrin_rpt-contain_dom	-	no_errors	TRPM5	HGNC	ENSG00000070985				20	0	0	7	9	56.25
CHST1	0	genome.wustl.edu	37	11	45671618	45671618	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	11	45671618	45671618	C	A	SNP	CHST1	ENST00000308064	human	ensembl	74_37	-1	known	missense	c.856	p.G286C	1.000	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST1	HGNC	ENSG00000175264				38	0	0	31	13	29.5455
HARBI1	0	genome.wustl.edu	37	11	46625165	46625165	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	11	46625165	46625165	G	A	SNP	HARBI1	ENST00000326737	human	ensembl	74_37	-1	known	missense	c.965	p.P322L	0.991	NULL	pfam_Harbinger_derived_prot_plant	-	no_errors	HARBI1	HGNC	ENSG00000180423				66	0	0	46	24	34.2857
LRP4	0	genome.wustl.edu	37	11	46910972	46910972	+	Silent	SNP	G	G	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	11	46910972	46910972	G	T	SNP	LRP4	ENST00000378623	human	ensembl	74_37	-1	known	silent	c.2205	p.A735	1.000	superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom	pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP4	HGNC	ENSG00000134569				91	0	0	50	39	43.8202
TRIM48	0	genome.wustl.edu	37	11	55035844	55035844	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	11	55035844	55035844	T	C	SNP	TRIM48	ENST00000417545	human	ensembl	74_37	+1	known	missense	c.574	p.Y192H	0.183	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM48	HGNC	ENSG00000150244				59	0	0	89	5	5.31915
UBQLN3	0	genome.wustl.edu	37	11	5528836	5528836	+	Silent	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	11	5528836	5528836	C	T	SNP	UBQLN3	ENST00000311659	human	ensembl	74_37	-1	known	silent	c.1953	p.K651	0.999	pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,pfam_UBA/Ts_N,superfamily_UBA-like,superfamily_ARM-type_fold,smart_Ubiquitin_dom,smart_STI1_HS-bd,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Ubiquitin_supergroup	-	no_errors	UBQLN3	HGNC	ENSG00000175520				84	0	0	36	26	41.9355
OR4C16	0	genome.wustl.edu	37	11	55340531	55340531	+	Silent	SNP	A	A	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	11	55340531	55340531	A	C	SNP	OR4C16	ENST00000314634	human	ensembl	74_37	+1	known	silent	c.928	p.R310	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4C16	HGNC	ENSG00000181935				16	0	0	15	6	28.5714
OR5D18	0	genome.wustl.edu	37	11	55587286	55587286	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	11	55587286	55587286	T	C	SNP	OR5D18	ENST00000333976	human	ensembl	74_37	+1	known	missense	c.181	p.Y61H	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5D18	HGNC	ENSG00000186119				175	0	0	129	57	30.6452
SLC43A1	0	genome.wustl.edu	37	11	57258808	57258808	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	11	57258808	57258808	G	A	SNP	SLC43A1	ENST00000278426	human	ensembl	74_37	-1	known	missense	c.1082	p.A361V	0.999	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC43A1	HGNC	ENSG00000149150				29	0	0	25	6	19.3548
INTS5	0	genome.wustl.edu	37	11	62416571	62416571	+	Silent	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	11	62416571	62416571	G	A	SNP	INTS5	ENST00000330574	human	ensembl	74_37	-1	known	silent	c.981	p.G327	0.997	NULL	NULL	-	no_errors	INTS5	HGNC	ENSG00000185085				70	0	0	75	6	7.40741
C11orf84	0	genome.wustl.edu	37	11	63585488	63585488	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	11	63585488	63585488	G	T	SNP	C11orf84	ENST00000294244	human	ensembl	74_37	+1	known	missense	c.339	p.Q113H	1.000	NULL	NULL	-	no_errors	C11orf84	HGNC	ENSG00000168005				60	0	0	22	11	33.3333
CDC42BPG	0	genome.wustl.edu	37	11	64606355	64606355	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	11	64606355	64606355	G	A	SNP	CDC42BPG	ENST00000342711	human	ensembl	74_37	-1	known	missense	c.896	p.P299L	0.001	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,pfscan_CRIB_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	CDC42BPG	HGNC	ENSG00000171219				22	0	0	9	5	35.7143
MALAT1	0	genome.wustl.edu	37	11	65269106	65269106	+	RNA	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	11	65269106	65269106	A	G	SNP	MALAT1	ENST00000534336	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.972	-	-	-	no_errors	MALAT1	HGNC	ENSG00000251562				87	0	0	58	36	38.2979
EHBP1L1	0	genome.wustl.edu	37	11	65349384	65349384	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	11	65349384	65349384	A	G	SNP	EHBP1L1	ENST00000309295	human	ensembl	74_37	+1	known	missense	c.1241	p.E414G	0.140	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	EHBP1L1	HGNC	ENSG00000173442				60	0	0	19	18	48.6486
PCNXL3	0	genome.wustl.edu	37	11	65386142	65386142	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	11	65386142	65386142	C	T	SNP	PCNXL3	ENST00000355703	human	ensembl	74_37	+1	known	nonsense	c.1309	p.R437*	0.988	NULL	pfam_Pecanex	-	no_errors	PCNXL3	HGNC	ENSG00000197136				31	0	0	24	12	33.3333
RRP8	0	genome.wustl.edu	37	11	6622451	6622451	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	11	6622451	6622451	C	T	SNP	RRP8	ENST00000254605	human	ensembl	74_37	-1	known	missense	c.845	p.R282H	0.964	pfam_Methyltransferase-rel	pfam_Methyltransferase-rel,pfam_Methyltransf_11	-	no_errors	RRP8	HGNC	ENSG00000132275				17	0	0	12	12	50
RBM4B	0	genome.wustl.edu	37	11	66436473	66436473	+	Silent	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	11	66436473	66436473	C	T	SNP	RBM4B	ENST00000310046	human	ensembl	74_37	-1	known	silent	c.702	p.A234	0.142	NULL	pfam_RRM_dom,pfam_Znf_CCHC,smart_RRM_dom,smart_Znf_CCHC,pfscan_Znf_CCHC,pfscan_RRM_dom	-	no_errors	RBM4B	HGNC	ENSG00000173914				52	0	0	33	16	32.6531
TBX10	0	genome.wustl.edu	37	11	67400514	67400514	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	11	67400514	67400514	G	A	SNP	TBX10	ENST00000335385	human	ensembl	74_37	-1	known	missense	c.610	p.R204C	0.953	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX10	HGNC	ENSG00000167800				185	0	0	179	56	23.8298
ALDH3B1	0	genome.wustl.edu	37	11	67789015	67789015	+	Silent	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	11	67789015	67789015	C	T	SNP	ALDH3B1	ENST00000007633	human	ensembl	74_37	+1	known	silent	c.621	p.T207	0.872	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH_NAD(P)	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH_NAD(P)	-	no_errors	ALDH3B1	HGNC	ENSG00000006534				150	0	0	84	44	34.375
NUMA1	0	genome.wustl.edu	37	11	71733444	71733444	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	11	71733444	71733444	G	T	SNP	NUMA1	ENST00000393695	human	ensembl	74_37	-1	known	missense	c.313	p.H105N	0.999	NULL	superfamily_Prefoldin	-	no_errors	NUMA1	HGNC	ENSG00000137497				122	0	0	79	43	35.2459
FOLR2	0	genome.wustl.edu	37	11	71932697	71932697	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	11	71932697	71932697	C	T	SNP	FOLR2	ENST00000298223	human	ensembl	74_37	+1	known	missense	c.659	p.A220V	0.991	NULL	pfam_Folate_rcpt-like	-	no_errors	FOLR2	HGNC	ENSG00000165457				61	0	0	40	29	42.029
CLPB	0	genome.wustl.edu	37	11	72006671	72006671	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	11	72006671	72006671	C	T	SNP	CLPB	ENST00000294053	human	ensembl	74_37	-1	known	missense	c.1441	p.G481R	1.000	pfam_ATPase_AAA-2,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,pfam_Sigma_54_int,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_ATPase_AAA-2,pfam_Ankyrin_rpt,pfam_Clp_ATPase_C,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,pfam_Zeta_toxin_domain,pfam_Sigma_54_int,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_AAA+_ATPase,prints_ClpA/B,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	CLPB	HGNC	ENSG00000162129				32	0	0	12	6	33.3333
MYO7A	0	genome.wustl.edu	37	11	76905421	76905421	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	11	76905421	76905421	C	T	SNP	MYO7A	ENST00000409709	human	ensembl	74_37	+1	known	missense	c.4175	p.A1392V	1.000	superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_FERM_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7A	HGNC	ENSG00000137474				18	0	0	16	11	40.7407
ANKRD42	0	genome.wustl.edu	37	11	82951953	82951953	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	11	82951953	82951953	A	C	SNP	ANKRD42	ENST00000393392	human	ensembl	74_37	+1	known	missense	c.1088	p.D363A	0.986	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD42	HGNC	ENSG00000137494				72	0	0	68	21	23.5955
TYR	0	genome.wustl.edu	37	11	89028414	89028414	+	Silent	SNP	C	C	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	11	89028414	89028414	C	A	SNP	TYR	ENST00000263321	human	ensembl	74_37	+1	known	silent	c.1470	p.A490	0.000	NULL	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre,prints_Tyrosinase	-	no_errors	TYR	HGNC	ENSG00000077498				41	0	0	18	11	37.931
FAT3	0	genome.wustl.edu	37	11	92086551	92086551	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	11	92086551	92086551	C	T	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	missense	c.1273	p.R425W	0.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323				46	0	0	18	9	33.3333
GNPTAB	0	genome.wustl.edu	37	12	102154925	102154925	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	12	102154925	102154925	C	T	SNP	GNPTAB	ENST00000299314	human	ensembl	74_37	-1	known	missense	c.3115	p.E1039K	0.998	pfscan_EF_hand_dom	pfam_DMAP1-bd,pfam_Notch_dom,pfam_DUF3184,superfamily_Notch_dom,smart_Notch_dom,pfscan_EF_hand_dom,pfscan_Notch_dom	-	no_errors	GNPTAB	HGNC	ENSG00000111670				41	0	0	33	21	38.8889
STAB2	0	genome.wustl.edu	37	12	104123939	104123939	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	12	104123939	104123939	A	G	SNP	STAB2	ENST00000388887	human	ensembl	74_37	+1	known	missense	c.5128	p.I1710V	0.338	pfam_FAS1_domain,superfamily_FAS1_domain,smart_FAS1_domain,pfscan_FAS1_domain	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_FAS1_domain,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB2	HGNC	ENSG00000136011				128	0	0	93	61	39.6104
BTBD11	0	genome.wustl.edu	37	12	108013807	108013807	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	12	108013807	108013807	G	A	SNP	BTBD11	ENST00000280758	human	ensembl	74_37	+1	known	missense	c.2497	p.A833T	0.994	NULL	pfam_Ankyrin_rpt,pfam_BTB_POZ,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,superfamily_Histone-fold,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like	-	no_errors	BTBD11	HGNC	ENSG00000151136				27	0	0	14	9	39.1304
TAS2R7	0	genome.wustl.edu	37	12	10954759	10954759	+	Silent	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	12	10954759	10954759	G	A	SNP	TAS2R7	ENST00000240687	human	ensembl	74_37	-1	known	silent	c.411	p.C137	0.000	pfam_TAS2_rcpt,pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_TAS2_rcpt,pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	TAS2R7	HGNC	ENSG00000121377				41	0	0	23	15	39.4737
MYO1H	0	genome.wustl.edu	37	12	109845646	109845646	+	Silent	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	12	109845646	109845646	A	G	SNP	MYO1H	ENST00000431443	human	ensembl	74_37	+1	known	silent	c.1035	p.A345	0.001	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYO1H	HGNC	ENSG00000174527				71	0	0	39	22	36.0656
MVK	0	genome.wustl.edu	37	12	110023886	110023886	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	12	110023886	110023886	T	A	SNP	MVK	ENST00000228510	human	ensembl	74_37	+1	known	missense	c.587	p.I196N	1.000	pfam_GHMP_kinase_N_dom,superfamily_Ribosomal_S5_D2-typ_fold,prints_Mevalonate/galactokinase,tigrfam_Mev_gal_kin	pfam_GHMP_kinase_N_dom,pfam_GHMP_kinase_C_dom,superfamily_Ribosomal_S5_D2-typ_fold,prints_Mevalonate/galactokinase,prints_Galkinase,tigrfam_Mev_gal_kin	-	no_errors	MVK	HGNC	ENSG00000110921				38	0	0	21	18	46.1538
DDX54	0	genome.wustl.edu	37	12	113617081	113617081	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	12	113617081	113617081	C	T	SNP	DDX54	ENST00000314045	human	ensembl	74_37	-1	known	missense	c.431	p.S144N	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_DBP10CT,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX54	HGNC	ENSG00000123064				30	0	0	16	7	30.4348
PRB1	0	genome.wustl.edu	37	12	11506168	11506168	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	12	11506168	11506168	T	C	SNP	PRB1	ENST00000500254	human	ensembl	74_37	-1	known	missense	c.470	p.N157S	0.003	NULL	NULL	-	no_errors	PRB1	HGNC	ENSG00000251655				177	0	0	145	48	24.8705
KDM2B	0	genome.wustl.edu	37	12	121970842	121970842	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	12	121970842	121970842	G	A	SNP	KDM2B	ENST00000377071	human	ensembl	74_37	-1	known	missense	c.800	p.T267M	1.000	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	pfam_Znf_CXXC,pfam_F-box_dom,pfam_JmjC_dom,superfamily_Znf_FYVE_PHD,smart_JmjC_dom,smart_Znf_PHD,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KDM2B	HGNC	ENSG00000089094				61	0	0	37	31	45.5882
PITPNM2	0	genome.wustl.edu	37	12	123489928	123489928	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	12	123489928	123489928	C	T	SNP	PITPNM2	ENST00000320201	human	ensembl	74_37	-1	known	missense	c.811	p.V271I	0.000	NULL	pfam_PI_transfer,pfam_DDHD,pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2,pfscan_DDHD,prints_PI_transfer	-	no_errors	PITPNM2	HGNC	ENSG00000090975				94	0	0	60	34	36.1702
DNAH10	0	genome.wustl.edu	37	12	124371810	124371810	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	12	124371810	124371810	A	G	SNP	DNAH10	ENST00000409039	human	ensembl	74_37	+1	known	missense	c.8591	p.H2864R	1.000	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_PyrdxlP-dep_Trfase,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653				27	0	0	16	14	46.6667
ATF7IP	0	genome.wustl.edu	37	12	14628902	14628902	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	12	14628902	14628902	G	T	SNP	ATF7IP	ENST00000261168	human	ensembl	74_37	+1	known	missense	c.2941	p.D981Y	1.000	NULL	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	ATF7IP	HGNC	ENSG00000171681				45	0	0	35	19	35.1852
SLCO1B3	0	genome.wustl.edu	37	12	21033817	21033817	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	12	21033817	21033817	G	C	SNP	SLCO1B3	ENST00000553473	human	ensembl	74_37	+1	known	missense	c.1360	p.V454L	0.414	pfam_OA_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO1B3	HGNC	ENSG00000111700				105	0	0	58	36	38.2979
KRAS	0	genome.wustl.edu	37	12	25398281	25398281	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	12	25398281	25398281	C	T	SNP	KRAS	ENST00000256078	human	ensembl	74_37	-1	known	missense	c.38	p.G13D	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	KRAS	HGNC	ENSG00000133703				27	0	0	14	6	30
TMTC1	0	genome.wustl.edu	37	12	29669328	29669328	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	12	29669328	29669328	T	C	SNP	TMTC1	ENST00000256062	human	ensembl	74_37	-1	known	missense	c.1937	p.Y646C	1.000	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,pfam_TPR_2,pfam_DUF1736,pfam_PIK-rel_kinase_FAT,pfam_TPR-3,smart_HAT,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC1	HGNC	ENSG00000133687				79	0	0	75	25	25
CNTN1	0	genome.wustl.edu	37	12	41419075	41419075	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	12	41419075	41419075	G	A	SNP	CNTN1	ENST00000347616	human	ensembl	74_37	+1	known	missense	c.2647	p.A883T	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN1	HGNC	ENSG00000018236				272	1	0.3663	197	35	15.0862
SENP1	0	genome.wustl.edu	37	12	48440804	48440804	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	12	48440804	48440804	T	G	SNP	SENP1	ENST00000004980	human	ensembl	74_37	-1	known	missense	c.1733	p.E578A	1.000	pfam_Peptidase_C48,pfscan_Peptidase_C48	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP1	HGNC	ENSG00000079387				67	0	0	39	32	45.0704
KCNA6	0	genome.wustl.edu	37	12	4920572	4920572	+	Silent	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	12	4920572	4920572	C	T	SNP	KCNA6	ENST00000280684	human	ensembl	74_37	+1	known	silent	c.1365	p.P455	0.000	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl,prints_K_chnl_volt-dep_Kv	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.6,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA6	HGNC	ENSG00000151079				84	0	0	43	22	33.8462
CACNB3	0	genome.wustl.edu	37	12	49220203	49220203	+	Silent	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	12	49220203	49220203	C	T	SNP	CACNB3	ENST00000301050	human	ensembl	74_37	+1	known	silent	c.796	p.L266	1.000	pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,smart_GK/Ca_channel_bsu,prints_VDCC_L_bsu	pfam_GK/Ca_channel_bsu,pfam_VDCC_L_bsu,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_GK/Ca_channel_bsu,prints_VDCC_L_bsu,prints_VDCC_L_b3su	-	no_errors	CACNB3	HGNC	ENSG00000167535				59	0	0	84	5	5.61798
KMT2D	0	genome.wustl.edu	37	12	49427944	49427944	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	12	49427944	49427944	G	A	SNP	KMT2D	ENST00000301067	human	ensembl	74_37	-1	known	missense	c.10646	p.A3549V	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2D	HGNC	ENSG00000167548				92	0	0	70	16	18.6047
GALNT6	0	genome.wustl.edu	37	12	51773084	51773084	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	12	51773084	51773084	C	T	SNP	GALNT6	ENST00000356317	human	ensembl	74_37	-1	known	missense	c.482	p.R161Q	0.998	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT6	HGNC	ENSG00000139629				40	0	0	19	5	20.8333
KRT6A	0	genome.wustl.edu	37	12	52885323	52885323	+	Silent	SNP	C	C	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	12	52885323	52885323	C	A	SNP	KRT6A	ENST00000330722	human	ensembl	74_37	-1	known	silent	c.738	p.V246	0.948	pfam_IF,prints_Keratin_II	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT6A	HGNC	ENSG00000205420				98	0	0	47	23	32.8571
KRT78	0	genome.wustl.edu	37	12	53233614	53233614	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	12	53233614	53233614	C	T	SNP	KRT78	ENST00000304620	human	ensembl	74_37	-1	known	missense	c.1202	p.S401N	0.972	pfam_IF,superfamily_Prefoldin	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT78	HGNC	ENSG00000170423				80	0	0	45	44	49.4382
ZNF740	0	genome.wustl.edu	37	12	53581418	53581418	+	RNA	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	12	53581418	53581418	C	T	SNP	ZNF740	ENST00000551514	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.015	-	-	-	no_errors	ZNF740	HGNC	ENSG00000139651				15	0	0	4	4	50
TIMELESS	0	genome.wustl.edu	37	12	56818681	56818681	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	12	56818681	56818681	A	G	SNP	TIMELESS	ENST00000553532	human	ensembl	74_37	-1	known	missense	c.1733	p.M578T	0.000	NULL	pfam_TIMELESS_C,pfam_Timeless	-	no_errors	TIMELESS	HGNC	ENSG00000111602				77	0	0	45	27	37.5
LRP1	0	genome.wustl.edu	37	12	57579622	57579622	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	12	57579622	57579622	A	G	SNP	LRP1	ENST00000243077	human	ensembl	74_37	+1	known	missense	c.6772	p.S2258G	1.000	NULL	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384				42	0	0	20	18	47.3684
NCAPD2	0	genome.wustl.edu	37	12	6631158	6631158	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	12	6631158	6631158	G	A	SNP	NCAPD2	ENST00000315579	human	ensembl	74_37	+1	known	missense	c.1909	p.A637T	1.000	superfamily_ARM-type_fold,pirsf_Condensin_cplx_su1	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_Condensin_cplx_su1	-	no_errors	NCAPD2	HGNC	ENSG00000010292				82	0	0	60	37	38.1443
BEST3	0	genome.wustl.edu	37	12	70049234	70049234	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	12	70049234	70049234	T	G	SNP	BEST3	ENST00000330891	human	ensembl	74_37	-1	known	missense	c.1460	p.Q487P	0.988	NULL	pfam_Bestrophin/UPF0187	-	no_errors	BEST3	HGNC	ENSG00000127325				131	0	0	125	8	6.01504
CLSTN3	0	genome.wustl.edu	37	12	7286179	7286179	+	Silent	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	12	7286179	7286179	C	T	SNP	CLSTN3	ENST00000266546	human	ensembl	74_37	+1	known	silent	c.198	p.C66	0.990	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CLSTN3	HGNC	ENSG00000139182				54	0	0	26	24	48
KCNC2	0	genome.wustl.edu	37	12	75601370	75601370	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	12	75601370	75601370	G	A	SNP	KCNC2	ENST00000549446	human	ensembl	74_37	-1	known	missense	c.394	p.P132S	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl_volt-dep_Kv3	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNC2	HGNC	ENSG00000166006				20	0	0	17	10	37.037
ALX1	0	genome.wustl.edu	37	12	85674056	85674056	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	12	85674056	85674056	A	G	SNP	ALX1	ENST00000316824	human	ensembl	74_37	+1	known	missense	c.17	p.E6G	1.000	NULL	pfam_Homeobox_dom,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_OAR_dom,pfscan_Homeobox_dom	-	no_errors	ALX1	HGNC	ENSG00000180318				83	0	0	81	6	6.89655
CLEC4D	0	genome.wustl.edu	37	12	8673741	8673741	+	Silent	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	12	8673741	8673741	C	T	SNP	CLEC4D	ENST00000299665	human	ensembl	74_37	+1	known	silent	c.522	p.P174	0.096	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	CLEC4D	HGNC	ENSG00000166527				71	0	0	50	23	31.5068
CCDC41	0	genome.wustl.edu	37	12	94769791	94769791	+	Silent	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	12	94769791	94769791	A	G	SNP	CCDC41	ENST00000339839	human	ensembl	74_37	-1	known	silent	c.804	p.A268	1.000	NULL	NULL	-	no_errors	CCDC41	HGNC	ENSG00000173588				17	0	0	4	13	76.4706
APAF1	0	genome.wustl.edu	37	12	99121028	99121028	+	Silent	SNP	C	C	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	12	99121028	99121028	C	A	SNP	APAF1	ENST00000551964	human	ensembl	74_37	+1	known	silent	c.3534	p.G1178	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Apoptotic_pept-activating_1,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_NB-ARC,pfam_CARD,superfamily_WD40_repeat_dom,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pirsf_Apoptotic_pept-activating_1,pfscan_CARD,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Disease_R,prints_G-protein_beta_WD-40_rep	-	no_errors	APAF1	HGNC	ENSG00000120868				119	0	0	52	25	32.4675
TMTC4	0	genome.wustl.edu	37	13	101278337	101278337	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	13	101278337	101278337	C	T	SNP	TMTC4	ENST00000342624	human	ensembl	74_37	-1	known	missense	c.1574	p.R525Q	1.000	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,pfam_DUF1736,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC4	HGNC	ENSG00000125247				75	0	0	68	22	24.4444
PDX1	0	genome.wustl.edu	37	13	28498612	28498612	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	13	28498612	28498612	G	A	SNP	PDX1	ENST00000381033	human	ensembl	74_37	+1	known	missense	c.626	p.R209H	0.997	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa,prints_Homeobox_antennapedia	-	no_errors	PDX1	HGNC	ENSG00000139515				19	0	0	16	14	46.6667
NBEA	0	genome.wustl.edu	37	13	36006531	36006531	+	Splice_Site	SNP	G	G	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	13	36006531	36006531	G	C	SNP	NBEA	ENST00000310336	human	ensembl	74_37	+1	known	splice_site	c.6304+1	e39+1	1.000	-	-	-	no_errors	NBEA	HGNC	ENSG00000172915				27	0	0	53	4	7.01754
ELF1	0	genome.wustl.edu	37	13	41533046	41533046	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	13	41533046	41533046	A	G	SNP	ELF1	ENST00000239882	human	ensembl	74_37	-1	known	missense	c.179	p.M60T	1.000	pfam_TF_Elf_N	pfam_TF_Elf_N,pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ELF1	HGNC	ENSG00000120690				109	0	0	118	55	31.7919
MTRF1	0	genome.wustl.edu	37	13	41797467	41797467	+	Silent	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	13	41797467	41797467	C	T	SNP	MTRF1	ENST00000430347	human	ensembl	74_37	-1	known	silent	c.1188	p.E396	1.000	pfam_Pep_chain_release_fac_I_II	pfam_Pep_chain_release_fac_I_II,pfam_PCRF,smart_PCRF	-	no_errors	MTRF1	HGNC	ENSG00000120662				151	0	0	143	85	37.2807
SPERT	0	genome.wustl.edu	37	13	46287863	46287863	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	13	46287863	46287863	G	A	SNP	SPERT	ENST00000310521	human	ensembl	74_37	+1	known	missense	c.703	p.A235T	0.000	NULL	NULL	-	no_errors	SPERT	HGNC	ENSG00000174015				18	0	0	26	12	31.5789
KPNA3	0	genome.wustl.edu	37	13	50296149	50296149	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	13	50296149	50296149	A	G	SNP	KPNA3	ENST00000261667	human	ensembl	74_37	-1	known	missense	c.668	p.V223A	1.000	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,pfam_Importin-a_IBB,pfam_HEAT,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,pfscan_Importin-a_IBB	-	no_errors	KPNA3	HGNC	ENSG00000102753				76	0	0	93	26	21.8487
SERPINE3	0	genome.wustl.edu	37	13	51922396	51922396	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	13	51922396	51922396	C	T	SNP	SERPINE3	ENST00000521255	human	ensembl	74_37	+1	known	missense	c.748	p.P250S	1.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINE3	HGNC	ENSG00000253309				19	0	0	9	9	50
PCDH17	0	genome.wustl.edu	37	13	58206969	58206969	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	13	58206969	58206969	C	T	SNP	PCDH17	ENST00000377918	human	ensembl	74_37	+1	known	missense	c.289	p.R97C	1.000	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH17	HGNC	ENSG00000118946				32	0	0	23	12	34.2857
EDNRB	0	genome.wustl.edu	37	13	78492678	78492678	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	13	78492678	78492678	C	T	SNP	EDNRB	ENST00000334286	human	ensembl	74_37	-1	known	missense	c.31	p.A11T	0.288	prints_ETB_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_ETB_rcpt,prints_Endthln_rcpt,prints_GPCR_Rhodpsn,prints_Bombsn_rcpt	-	no_errors	EDNRB	HGNC	ENSG00000136160				31	0	0	36	5	12.1951
EDNRB	0	genome.wustl.edu	37	13	78493632	78493632	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	13	78493632	78493632	G	A	SNP	EDNRB	ENST00000377211	human	ensembl	74_37	-1	putative	missense	c.119	p.A40V	0.992	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_ETB_rcpt,prints_Endthln_rcpt,prints_GPCR_Rhodpsn,prints_Bombsn_rcpt	-	no_errors	EDNRB	HGNC	ENSG00000136160				33	0	0	33	9	21.4286
DOCK9	0	genome.wustl.edu	37	13	99505739	99505739	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	13	99505739	99505739	C	T	SNP	DOCK9	ENST00000339416	human	ensembl	74_37	-1	known	missense	c.3872	p.R1291H	1.000	superfamily_ARM-type_fold	pfam_DOCK_C,pfam_DOCK_C/D_N,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK9	HGNC	ENSG00000088387				207	0	0	233	77	24.8387
UBAC2	0	genome.wustl.edu	37	13	99966475	99966475	+	Splice_Site	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	13	99966475	99966475	G	A	SNP	UBAC2	ENST00000376440	human	ensembl	74_37	+1	known	splice_site	c.408+1	e3+1	1.000	-	-	-	no_errors	UBAC2	HGNC	ENSG00000134882				106	0	0	149	8	5.09554
ADSSL1	0	genome.wustl.edu	37	14	105208323	105208323	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	14	105208323	105208323	C	A	SNP	ADSSL1	ENST00000332972	human	ensembl	74_37	+1	known	missense	c.1061	p.P354H	1.000	pfam_Adenylosuccinate_synthetase,superfamily_P-loop_NTPase,smart_Adenylosuccinate_synthetase,tigrfam_Adenylosuccinate_synthetase	pfam_Adenylosuccinate_synthetase,superfamily_P-loop_NTPase,smart_Adenylosuccinate_synthetase,tigrfam_Adenylosuccinate_synthetase	-	no_errors	ADSSL1	HGNC	ENSG00000185100				71	0	0	57	41	41.8367
OR4Q3	0	genome.wustl.edu	37	14	20215981	20215981	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	14	20215981	20215981	G	A	SNP	OR4Q3	ENST00000331723	human	ensembl	74_37	+1	known	missense	c.395	p.R132H	0.998	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4Q3	HGNC	ENSG00000182652				155	0	0	116	19	14.0741
OR4M1	0	genome.wustl.edu	37	14	20248625	20248625	+	Silent	SNP	C	C	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	14	20248625	20248625	C	A	SNP	OR4M1	ENST00000315957	human	ensembl	74_37	+1	known	silent	c.144	p.T48	0.472	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4M1	HGNC	ENSG00000176299				583	1	0.171233	455	87	16.0517
OR4L1	0	genome.wustl.edu	37	14	20529031	20529031	+	Silent	SNP	A	A	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	14	20529031	20529031	A	T	SNP	OR4L1	ENST00000315683	human	ensembl	74_37	+1	known	silent	c.828	p.T276	0.981	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR4L1	HGNC	ENSG00000176246				99	0	0	63	51	44.7368
ANG	0	genome.wustl.edu	37	14	21162101	21162101	+	Silent	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	14	21162101	21162101	C	T	SNP	ANG	ENST00000336811	human	ensembl	74_37	+1	known	silent	c.378	p.N126	0.000	pfam_RNaseA_domain,superfamily_RNaseA_domain,smart_RNaseA_domain,prints_RNaseA	pfam_RNaseA_domain,superfamily_RNaseA_domain,smart_RNaseA_domain,prints_RNaseA	-	no_errors	ANG	HGNC	ENSG00000214274				115	0	0	55	40	42.1053
RNASE1	0	genome.wustl.edu	37	14	21270141	21270141	+	Silent	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	14	21270141	21270141	C	T	SNP	RNASE1	ENST00000340900	human	ensembl	74_37	-1	known	silent	c.87	p.K29	0.077	superfamily_RNaseA_domain,smart_RNaseA_domain	pfam_RNaseA_domain,superfamily_RNaseA_domain,smart_RNaseA_domain,prints_RNaseA	-	no_errors	RNASE1	HGNC	ENSG00000129538				31	0	0	15	14	48.2759
CDH24	0	genome.wustl.edu	37	14	23517497	23517497	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	14	23517497	23517497	C	T	SNP	CDH24	ENST00000267383	human	ensembl	74_37	-1	known	missense	c.2152	p.A718T	0.000	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH24	HGNC	ENSG00000139880				21	0	0	11	6	35.2941
BCL2L2	0	genome.wustl.edu	37	14	23777209	23777209	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	14	23777209	23777209	G	A	SNP	BCL2L2	ENST00000250405	human	ensembl	74_37	+1	known	missense	c.233	p.R78H	1.000	pfam_Blc2_fam,pfscan_Bcl2-like,prints_Apop_reg_BclW	pfam_Blc2_fam,pfam_Bcl2_BH4,smart_Bcl2_BH4,pfscan_Bcl2-like,pfscan_Bcl2_BH4,prints_Apop_reg_BclW,prints_Blc2_fam	-	no_errors	BCL2L2	HGNC	ENSG00000129473				49	0	0	43	4	8.51064
PCK2	0	genome.wustl.edu	37	14	24572069	24572069	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	14	24572069	24572069	G	A	SNP	PCK2	ENST00000216780	human	ensembl	74_37	+1	known	missense	c.1342	p.A448T	1.000	pfam_PEP_carboxykinase_GTP,pirsf_PEP_carboxykinase_GTP	pfam_PEP_carboxykinase_GTP,superfamily_PEP_carboxykinase_N,pirsf_PEP_carboxykinase_GTP	-	no_errors	PCK2	HGNC	ENSG00000100889				108	0	0	59	32	35.1648
TGM1	0	genome.wustl.edu	37	14	24727798	24727798	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	14	24727798	24727798	T	C	SNP	TGM1	ENST00000206765	human	ensembl	74_37	-1	known	missense	c.1241	p.D414G	1.000	pfam_Transglutaminase-like,smart_Transglutaminase-like	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM1	HGNC	ENSG00000092295				62	0	0	37	28	43.0769
SCFD1	0	genome.wustl.edu	37	14	31188570	31188570	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	14	31188570	31188570	C	T	SNP	SCFD1	ENST00000458591	human	ensembl	74_37	+1	known	missense	c.1723	p.R575W	0.965	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	SCFD1	HGNC	ENSG00000092108				83	0	0	64	39	37.8641
AKAP6	0	genome.wustl.edu	37	14	33015700	33015700	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	14	33015700	33015700	T	C	SNP	AKAP6	ENST00000280979	human	ensembl	74_37	+1	known	missense	c.1841	p.V614A	0.002	NULL	smart_Spectrin/alpha-actinin	-	no_errors	AKAP6	HGNC	ENSG00000151320				99	0	0	62	46	42.5926
SEC23A	0	genome.wustl.edu	37	14	39514489	39514489	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	14	39514489	39514489	A	G	SNP	SEC23A	ENST00000307712	human	ensembl	74_37	-1	known	missense	c.1777	p.F593L	1.000	pfam_Sec23/24_helical_dom,superfamily_Sec23/24_helical_dom	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC23A	HGNC	ENSG00000100934				47	0	0	56	3	5.08475
TBPL2	0	genome.wustl.edu	37	14	55900349	55900349	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	14	55900349	55900349	T	C	SNP	TBPL2	ENST00000247219	human	ensembl	74_37	-1	known	missense	c.787	p.S263G	1.000	pfam_TBP,prints_TBP	pfam_TBP,prints_TBP	-	no_errors	TBPL2	HGNC	ENSG00000182521				96	0	0	73	58	44.2748
C14orf105	0	genome.wustl.edu	37	14	57938138	57938138	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	14	57938138	57938138	G	C	SNP	C14orf105	ENST00000216445	human	ensembl	74_37	-1	known	missense	c.826	p.R276G	0.014	NULL	NULL	-	no_errors	C14orf105	HGNC	ENSG00000100557				71	0	0	44	17	27.8689
WDR89	0	genome.wustl.edu	37	14	64065892	64065892	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	14	64065892	64065892	G	A	SNP	WDR89	ENST00000267522	human	ensembl	74_37	-1	known	missense	c.769	p.R257C	0.090	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR89	HGNC	ENSG00000140006				135	0	0	85	56	39.7163
ACTN1	0	genome.wustl.edu	37	14	69358881	69358881	+	Silent	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	14	69358881	69358881	C	T	SNP	ACTN1	ENST00000394419	human	ensembl	74_37	-1	known	silent	c.975	p.P325	0.916	pfam_Spectrin_repeat	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	ACTN1	HGNC	ENSG00000072110				53	0	0	61	7	10.2941
VRTN	0	genome.wustl.edu	37	14	74824119	74824119	+	Silent	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	14	74824119	74824119	C	T	SNP	VRTN	ENST00000256362	human	ensembl	74_37	+1	known	silent	c.633	p.C211	0.010	NULL	pfam_Transposase_8	-	no_errors	VRTN	HGNC	ENSG00000133980				59	0	0	18	21	53.8462
NRXN3	0	genome.wustl.edu	37	14	80319917	80319917	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	14	80319917	80319917	G	A	SNP	NRXN3	ENST00000554738	human	ensembl	74_37	+1	known	missense	c.4105	p.A1369T	1.000	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN3	HGNC	ENSG00000021645				161	0	0	103	90	46.6321
PSMC1	0	genome.wustl.edu	37	14	90735804	90735804	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	14	90735804	90735804	G	C	SNP	PSMC1	ENST00000261303	human	ensembl	74_37	+1	known	missense	c.945	p.Q315H	1.000	pfam_ATPase_AAA_core,pfam_ATPase_AAA-2,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	pfam_ATPase_AAA_core,pfam_ATPase_AAA-2,pfam_DUF815,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	-	no_errors	PSMC1	HGNC	ENSG00000100764				105	0	0	61	39	39
ASB2	0	genome.wustl.edu	37	14	94413763	94413763	+	Silent	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	14	94413763	94413763	G	A	SNP	ASB2	ENST00000315988	human	ensembl	74_37	-1	known	silent	c.840	p.A280	0.882	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C,prints_Ankyrin_rpt	-	no_errors	ASB2	HGNC	ENSG00000100628				53	0	0	44	29	39.726
MAGEL2	0	genome.wustl.edu	37	15	23890722	23890722	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	15	23890722	23890722	G	A	SNP	MAGEL2	ENST00000532292	human	ensembl	74_37	-1	known	missense	c.359	p.A120V	0.613	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEL2	HGNC	ENSG00000254585				22	0	0	6	4	40
NPAP1	0	genome.wustl.edu	37	15	24923624	24923624	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	15	24923624	24923624	A	C	SNP	NPAP1	ENST00000329468	human	ensembl	74_37	+1	known	missense	c.2610	p.Q870H	0.000	NULL	NULL	-	no_errors	NPAP1	HGNC	ENSG00000185823				117	0	0	47	41	46.5909
OTUD7A	0	genome.wustl.edu	37	15	31776530	31776530	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	15	31776530	31776530	G	A	SNP	OTUD7A	ENST00000382902	human	ensembl	74_37	-1	known	missense	c.1769	p.P590L	1.000	NULL	pfam_OTU,superfamily_UBA-like,smart_Znf_A20,pfscan_OTU,pfscan_Znf_A20	-	no_errors	OTUD7A	HGNC	ENSG00000169918				10	0	0	2	5	71.4286
FMN1	0	genome.wustl.edu	37	15	33358802	33358802	+	Silent	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	15	33358802	33358802	C	T	SNP	FMN1	ENST00000334528	human	ensembl	74_37	-1	known	silent	c.1284	p.K428	1.000	NULL	pfam_FH2_Formin,smart_FH2_Formin,prints_Formin_Cappuccino_subfam	-	no_errors	FMN1	HGNC	ENSG00000248905				44	0	0	25	11	30.5556
CSNK1A1P1	0	genome.wustl.edu	37	15	37109995	37109995	+	RNA	SNP	A	A	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	15	37109995	37109995	A	C	SNP	CSNK1A1P1	ENST00000430593	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.985	-	-	-	no_errors	CSNK1A1P1	HGNC	ENSG00000223518				46	0	0	33	16	32.6531
TGM5	0	genome.wustl.edu	37	15	43545709	43545709	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	15	43545709	43545709	C	T	SNP	TGM5	ENST00000220420	human	ensembl	74_37	-1	known	missense	c.679	p.A227T	1.000	NULL	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM5	HGNC	ENSG00000104055				44	0	0	35	10	22.2222
RNF111	0	genome.wustl.edu	37	15	59359012	59359012	+	Silent	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	15	59359012	59359012	T	C	SNP	RNF111	ENST00000434298	human	ensembl	74_37	+1	known	silent	c.1416	p.P472	0.994	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF111	HGNC	ENSG00000157450				92	0	0	47	44	48.3516
RNF111	0	genome.wustl.edu	37	15	59373146	59373146	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	15	59373146	59373146	A	G	SNP	RNF111	ENST00000434298	human	ensembl	74_37	+1	known	missense	c.1960	p.T654A	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF111	HGNC	ENSG00000157450				123	0	0	72	50	40.9836
HERC1	0	genome.wustl.edu	37	15	63904497	63904497	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	15	63904497	63904497	T	C	SNP	HERC1	ENST00000443617	human	ensembl	74_37	-1	known	missense	c.14353	p.N4785D	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657				42	0	0	25	12	32.4324
FAM96A	0	genome.wustl.edu	37	15	64373351	64373351	+	Splice_Site	SNP	C	C	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	15	64373351	64373351	C	A	SNP	FAM96A	ENST00000300030	human	ensembl	74_37	-1	known	splice_site	c.290-1	e3-1	1.000	-	-	-	no_errors	FAM96A	HGNC	ENSG00000166797				57	0	0	43	24	35.8209
CYP11A1	0	genome.wustl.edu	37	15	74640300	74640300	+	Silent	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	15	74640300	74640300	G	A	SNP	CYP11A1	ENST00000268053	human	ensembl	74_37	-1	known	silent	c.366	p.L122	0.003	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_mitochondrial,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP11A1	HGNC	ENSG00000140459				52	0	0	32	14	30.4348
LOC645752	0	genome.wustl.edu	37	15	78219129	78219129	+	RNA	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	15	78219129	78219129	C	T	SNP	LOC645752	ENST00000567226	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.990	-	-	-	no_errors	RP11-114H24.2	Clone_based_vega_gene	ENSG00000260776				56	0	0	43	15	25.8621
AP3B2	0	genome.wustl.edu	37	15	83333197	83333197	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	15	83333197	83333197	C	A	SNP	AP3B2	ENST00000261722	human	ensembl	74_37	-1	known	missense	c.2126	p.S709I	1.000	pirsf_AP3_beta	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,superfamily_Coatomer/clathrin_app_Ig-like,pirsf_AP3_beta	-	no_errors	AP3B2	HGNC	ENSG00000103723				38	0	0	16	26	61.9048
BLM	0	genome.wustl.edu	37	15	91295092	91295092	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	15	91295092	91295092	A	G	SNP	BLM	ENST00000355112	human	ensembl	74_37	+1	known	missense	c.875	p.D292G	0.001	NULL	pfam_RQC_domain,pfam_BDHCT,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_HRDC_dom,superfamily_P-loop_NTPase,superfamily_HRDC-like,smart_Helicase_ATP-bd,smart_Helicase_C,smart_RQC_domain,smart_HRDC_dom,pfscan_HRDC_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	BLM	HGNC	ENSG00000197299				73	0	0	71	7	8.97436
TELO2	0	genome.wustl.edu	37	16	1556268	1556268	+	Silent	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	16	1556268	1556268	C	T	SNP	TELO2	ENST00000262319	human	ensembl	74_37	+1	known	silent	c.2064	p.S688	0.716	NULL	pfam_Telomere_length_regulation_dom,superfamily_ARM-type_fold	-	no_errors	TELO2	HGNC	ENSG00000100726				39	0	0	20	13	39.3939
ITPRIPL2	0	genome.wustl.edu	37	16	19127146	19127146	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	16	19127146	19127146	G	A	SNP	ITPRIPL2	ENST00000381440	human	ensembl	74_37	+1	known	missense	c.1363	p.V455I	0.908	NULL	NULL	-	no_errors	ITPRIPL2	HGNC	ENSG00000205730				81	0	0	35	24	40.678
PKD1	0	genome.wustl.edu	37	16	2158763	2158763	+	Silent	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	16	2158763	2158763	C	T	SNP	PKD1	ENST00000262304	human	ensembl	74_37	-1	known	silent	c.6405	p.A2135	0.888	superfamily_PKD_dom,smart_PKD/Chitinase_dom,pfscan_PKD_dom,tigrfam_Polycystin_cat	pfam_PKD_dom,pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_PLAT/LH2_dom,pfam_C-type_lectin,pfam_WSC_carb-bd,pfam_GPS_dom,superfamily_C-type_lectin_fold,superfamily_Lipase_LipOase,superfamily_PKD_dom,superfamily_Fe_hydrogenase,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_WSC_carb-bd_subgr,smart_PKD/Chitinase_dom,smart_C-type_lectin,smart_GPS_dom,smart_PLAT/LH2_dom,prints_PKD_1,pfscan_GPS_dom,pfscan_C-type_lectin,pfscan_PKD_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like,pfscan_WSC_carb-bd,tigrfam_Polycystin_cat	-	no_errors	PKD1	HGNC	ENSG00000008710				10	0	0	1	3	75
PLK1	0	genome.wustl.edu	37	16	23695383	23695383	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	16	23695383	23695383	C	T	SNP	PLK1	ENST00000300093	human	ensembl	74_37	+1	known	missense	c.1009	p.R337W	1.000	NULL	pfam_Prot_kinase_dom,pfam_POLO_box_duplicated_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_dom	-	no_errors	PLK1	HGNC	ENSG00000166851				142	0	0	94	33	25.9843
AQP8	0	genome.wustl.edu	37	16	25228660	25228660	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	16	25228660	25228660	G	A	SNP	AQP8	ENST00000219660	human	ensembl	74_37	+1	known	missense	c.154	p.G52R	1.000	pfam_MIP,superfamily_Aquaporin-like,prints_MIP	pfam_MIP,superfamily_Aquaporin-like,prints_Aquaporin_8,prints_MIP	-	no_errors	AQP8	HGNC	ENSG00000103375				142	0	0	148	8	5.12821
KIAA0556	0	genome.wustl.edu	37	16	27709693	27709693	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	16	27709693	27709693	A	C	SNP	KIAA0556	ENST00000261588	human	ensembl	74_37	+1	known	missense	c.985	p.T329P	0.013	NULL	superfamily_Thaumatin	-	no_errors	KIAA0556	HGNC	ENSG00000047578				127	0	0	118	7	5.6
TAOK2	0	genome.wustl.edu	37	16	29997132	29997132	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	16	29997132	29997132	C	T	SNP	TAOK2	ENST00000308893	human	ensembl	74_37	+1	known	missense	c.1942	p.R648C	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TAOK2	HGNC	ENSG00000149930				23	0	0	12	11	47.8261
ZNF768	0	genome.wustl.edu	37	16	30536832	30536832	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	16	30536832	30536832	A	G	SNP	ZNF768	ENST00000380412	human	ensembl	74_37	-1	known	missense	c.629	p.L210P	0.668	NULL	pfam_Znf_C2H2,pfam_RNA_pol_II_repeat_euk,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF768	HGNC	ENSG00000169957				89	0	0	57	42	42.4242
PHKG2	0	genome.wustl.edu	37	16	30768297	30768297	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	16	30768297	30768297	A	G	SNP	PHKG2	ENST00000563588	human	ensembl	74_37	+1	known	missense	c.1100	p.Q367R	1.000	prints_Phosph_kin_gamma	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Phosph_kin_gamma,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PHKG2	HGNC	ENSG00000156873				88	0	0	56	43	43.4343
ZSCAN10	0	genome.wustl.edu	37	16	3142748	3142748	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	16	3142748	3142748	C	T	SNP	ZSCAN10	ENST00000252463	human	ensembl	74_37	-1	known	missense	c.26	p.R9Q	0.867	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN10	HGNC	ENSG00000130182				17	0	0	10	10	50
ZNF205	0	genome.wustl.edu	37	16	3170075	3170075	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	16	3170075	3170075	G	T	SNP	ZNF205	ENST00000219091	human	ensembl	74_37	+1	known	missense	c.1414	p.G472C	0.965	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF205	HGNC	ENSG00000122386				60	0	0	41	28	40.5797
ENSG00000261711	0	genome.wustl.edu	37	16	34713688	34713688	+	RNA	SNP	T	T	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	16	34713688	34713688	T	A	SNP	ENSG00000261711	ENST00000564452	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	RP11-80F22.9	Clone_based_vega_gene	ENSG00000261711				20	0	0	20	6	23.0769
ABCC11	0	genome.wustl.edu	37	16	48239399	48239399	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	16	48239399	48239399	A	G	SNP	ABCC11	ENST00000356608	human	ensembl	74_37	-1	known	missense	c.1730	p.V577A	1.000	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC11	HGNC	ENSG00000121270				89	0	0	46	23	33.3333
ADCY7	0	genome.wustl.edu	37	16	50326687	50326687	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	16	50326687	50326687	T	C	SNP	ADCY7	ENST00000254235	human	ensembl	74_37	+1	known	missense	c.638	p.V213A	0.004	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY7	HGNC	ENSG00000121281				69	0	0	47	6	11.3208
IRX3	0	genome.wustl.edu	37	16	54318975	54318975	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	16	54318975	54318975	G	A	SNP	IRX3	ENST00000329734	human	ensembl	74_37	-1	known	missense	c.818	p.A273V	0.002	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom	-	no_errors	IRX3	HGNC	ENSG00000177508				10	0	0	9	4	30.7692
LPCAT2	0	genome.wustl.edu	37	16	55583231	55583231	+	Silent	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	16	55583231	55583231	C	T	SNP	LPCAT2	ENST00000262134	human	ensembl	74_37	+1	known	silent	c.978	p.C326	1.000	NULL	pfam_EF_hand_dom,pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	-	no_errors	LPCAT2	HGNC	ENSG00000087253				90	0	0	86	12	12.2449
LPCAT2	0	genome.wustl.edu	37	16	55584911	55584911	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	16	55584911	55584911	C	T	SNP	LPCAT2	ENST00000262134	human	ensembl	74_37	+1	known	missense	c.1112	p.A371V	1.000	NULL	pfam_EF_hand_dom,pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	-	no_errors	LPCAT2	HGNC	ENSG00000087253				78	0	0	42	26	38.2353
CES1	0	genome.wustl.edu	37	16	55850858	55850858	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	16	55850858	55850858	T	A	SNP	CES1	ENST00000360526	human	ensembl	74_37	-1	known	missense	c.923	p.D308V	0.058	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CES1	HGNC	ENSG00000198848				183	0	0	138	63	31.3433
CAPN15	0	genome.wustl.edu	37	16	603483	603483	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	16	603483	603483	G	T	SNP	CAPN15	ENST00000219611	human	ensembl	74_37	+1	known	missense	c.3228	p.E1076D	1.000	NULL	pfam_Peptidase_C2_calpain_cat,pfam_Znf_RanBP2,smart_Znf_RanBP2,smart_Peptidase_C2_calpain_cat,pfscan_Znf_RanBP2,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN15	HGNC	ENSG00000103326				25	0	0	15	10	40
CDH8	0	genome.wustl.edu	37	16	61935209	61935209	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	16	61935209	61935209	A	G	SNP	CDH8	ENST00000577390	human	ensembl	74_37	-1	known	missense	c.421	p.W141R	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH8	HGNC	ENSG00000150394				86	0	0	49	24	32.8767
PSKH1	0	genome.wustl.edu	37	16	67942865	67942865	+	Silent	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	16	67942865	67942865	G	A	SNP	PSKH1	ENST00000291041	human	ensembl	74_37	+1	known	silent	c.213	p.T71	0.931	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	PSKH1	HGNC	ENSG00000159792				29	0	0	16	11	40.7407
SLC12A4	0	genome.wustl.edu	37	16	67986246	67986246	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	16	67986246	67986246	A	G	SNP	SLC12A4	ENST00000422611	human	ensembl	74_37	-1	known	missense	c.764	p.V255A	0.909	pfam_AA-permease/SLC12A_dom,tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,pfam_K/Cl_cotranspt_1/3,prints_KCL_cotranspt,prints_K/Cl_cotranspt1,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A4	HGNC	ENSG00000124067				109	0	0	76	46	37.7049
PLA2G15	0	genome.wustl.edu	37	16	68293549	68293549	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	16	68293549	68293549	C	A	SNP	PLA2G15	ENST00000219345	human	ensembl	74_37	+1	known	missense	c.1228	p.L410I	0.989	NULL	pfam_LACT/PDAT_acylTrfase	-	no_errors	PLA2G15	HGNC	ENSG00000103066				48	0	0	22	22	50
DDX19A	0	genome.wustl.edu	37	16	70395364	70395364	+	Silent	SNP	C	C	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	16	70395364	70395364	C	A	SNP	DDX19A	ENST00000302243	human	ensembl	74_37	+1	known	silent	c.337	p.R113	1.000	smart_Helicase_ATP-bd,pfscan_RNA_helicase_DEAD_Q_motif	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX19A	HGNC	ENSG00000168872				73	0	0	61	30	32.967
ENSG00000262528	0	genome.wustl.edu	37	16	705158	705158	+	RNA	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	16	705158	705158	C	T	SNP	ENSG00000262528	ENST00000573609	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LA16c-349E10.1	Clone_based_vega_gene	ENSG00000262528				48	0	0	22	21	48.8372
HYDIN	0	genome.wustl.edu	37	16	70843797	70843797	+	Silent	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	16	70843797	70843797	C	T	SNP	HYDIN	ENST00000393567	human	ensembl	74_37	-1	putative	silent	c.14772	p.T4924	0.001	NULL	superfamily_P-loop_NTPase,superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423				417	0	0	259	158	37.8897
TAT	0	genome.wustl.edu	37	16	71610203	71610203	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	16	71610203	71610203	G	T	SNP	TAT	ENST00000355962	human	ensembl	74_37	-1	known	missense	c.116	p.A39D	1.000	pfam_Tyr_aminoTrfase_ubiquitination,superfamily_PyrdxlP-dep_Trfase,pirsf_Tyrosine_transaminase	pfam_Aminotransferase_I/II,pfam_Tyr_aminoTrfase_ubiquitination,pfam_ArAA_b-elim_lyase/Thr_aldolase,pfam_Aminotrans_V/Cys_dSase,pfam_DegT/StrS_aminotransferase,superfamily_PyrdxlP-dep_Trfase,pirsf_Tyrosine_transaminase,tigrfam_Tyrosine_aminoTrfase,tigrfam_TyrNic_aminoTrfase	-	no_errors	TAT	HGNC	ENSG00000198650				70	0	0	49	32	39.5062
ZNF821	0	genome.wustl.edu	37	16	71894307	71894307	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	16	71894307	71894307	G	A	SNP	ZNF821	ENST00000425432	human	ensembl	74_37	-1	known	missense	c.853	p.R285W	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF821	HGNC	ENSG00000102984				45	0	0	26	21	44.6809
MLKL	0	genome.wustl.edu	37	16	74729294	74729294	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	16	74729294	74729294	C	T	SNP	MLKL	ENST00000308807	human	ensembl	74_37	-1	known	missense	c.362	p.R121H	0.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MLKL	HGNC	ENSG00000168404				108	0	0	51	48	48.4848
WDR59	0	genome.wustl.edu	37	16	74908279	74908279	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	16	74908279	74908279	T	C	SNP	WDR59	ENST00000262144	human	ensembl	74_37	-1	known	missense	c.2753	p.K918R	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_UBQ-conjugating_enzyme/RWD,smart_WD40_repeat,smart_RWD-domain,pfscan_RWD-domain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR59	HGNC	ENSG00000103091				41	0	0	22	14	38.8889
ADAMTS18	0	genome.wustl.edu	37	16	77328919	77328919	+	Silent	SNP	T	T	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	16	77328919	77328919	T	G	SNP	ADAMTS18	ENST00000282849	human	ensembl	74_37	-1	known	silent	c.2907	p.A969	0.013	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS18	HGNC	ENSG00000140873				40	0	0	37	22	37.2881
GSE1	0	genome.wustl.edu	37	16	85688453	85688453	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	16	85688453	85688453	A	G	SNP	GSE1	ENST00000253458	human	ensembl	74_37	+1	known	missense	c.653	p.Y218C	1.000	NULL	pfam_GSE-like	-	no_errors	GSE1	HGNC	ENSG00000131149				24	0	0	12	8	40
FBXO31	0	genome.wustl.edu	37	16	87367837	87367837	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	16	87367837	87367837	C	T	SNP	FBXO31	ENST00000311635	human	ensembl	74_37	-1	known	missense	c.1052	p.R351Q	1.000	NULL	pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXO31	HGNC	ENSG00000103264				55	0	0	39	18	31.5789
CTU2	0	genome.wustl.edu	37	16	88781126	88781126	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	16	88781126	88781126	G	A	SNP	CTU2	ENST00000567949	human	ensembl	74_37	+1	known	missense	c.1546	p.G516S	0.001	NULL	pfam_Thiouridylase_cyt_su2	-	no_errors	CTU2	HGNC	ENSG00000174177				11	0	0	10	4	28.5714
GRIN2A	0	genome.wustl.edu	37	16	9934585	9934585	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	16	9934585	9934585	A	C	SNP	GRIN2A	ENST00000330684	human	ensembl	74_37	-1	known	missense	c.1570	p.F524V	1.000	pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2A	HGNC	ENSG00000183454				85	0	0	70	12	14.6341
WDR81	0	genome.wustl.edu	37	17	1634162	1634162	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	1634162	1634162	A	G	SNP	WDR81	ENST00000409644	human	ensembl	74_37	+1	known	missense	c.3889	p.S1297G	1.000	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Kinase-like_dom,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR81	HGNC	ENSG00000167716				40	0	0	35	16	31.3725
FLCN	0	genome.wustl.edu	37	17	17131329	17131329	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	17131329	17131329	C	A	SNP	FLCN	ENST00000285071	human	ensembl	74_37	-1	known	missense	c.123	p.Q41H	1.000	NULL	pfam_Folliculin	-	no_errors	FLCN	HGNC	ENSG00000154803				31	0	0	27	11	28.9474
LRRC48	0	genome.wustl.edu	37	17	17898358	17898358	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	17898358	17898358	A	G	SNP	LRRC48	ENST00000313838	human	ensembl	74_37	+1	known	missense	c.757	p.M253V	1.000	NULL	NULL	-	no_errors	LRRC48	HGNC	ENSG00000171962				59	0	0	56	4	6.66667
DRG2	0	genome.wustl.edu	37	17	18005286	18005286	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	18005286	18005286	C	T	SNP	DRG2	ENST00000225729	human	ensembl	74_37	+1	known	nonsense	c.781	p.R261*	0.469	superfamily_P-loop_NTPase	pfam_TGS,pfam_GTP_binding_domain,pfam_Fe2_transport_prot_B_N,superfamily_P-loop_NTPase,superfamily_TGS-like,prints_GTP_binding_domain,tigrfam_Small_GTP-bd_dom	-	no_errors	DRG2	HGNC	ENSG00000108591				14	0	0	15	4	21.0526
FBXW10	0	genome.wustl.edu	37	17	18653319	18653319	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	18653319	18653319	C	T	SNP	FBXW10	ENST00000308799	human	ensembl	74_37	+1	known	missense	c.955	p.P319S	0.113	superfamily_F-box_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_F-box_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	FBXW10	HGNC	ENSG00000171931				102	0	0	115	18	13.5338
USP22	0	genome.wustl.edu	37	17	20907606	20907606	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	20907606	20907606	T	G	SNP	USP22	ENST00000261497	human	ensembl	74_37	-1	known	missense	c.1444	p.S482R	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP22	HGNC	ENSG00000124422				86	0	0	37	23	38.3333
MAP2K3	0	genome.wustl.edu	37	17	21208376	21208376	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	21208376	21208376	A	C	SNP	MAP2K3	ENST00000342679	human	ensembl	74_37	+1	known	missense	c.710	p.N237T	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP2K3	HGNC	ENSG00000034152				194	0	0	133	23	14.7436
SMG6	0	genome.wustl.edu	37	17	2200545	2200545	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	2200545	2200545	G	A	SNP	SMG6	ENST00000263073	human	ensembl	74_37	-1	known	missense	c.2143	p.R715C	1.000	pfam_EST1	pfam_EST1,smart_PIN_dom	-	no_errors	SMG6	HGNC	ENSG00000070366				87	0	0	46	36	43.9024
KSR1	0	genome.wustl.edu	37	17	25909717	25909717	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	25909717	25909717	G	A	SNP	KSR1	ENST00000319524	human	ensembl	74_37	+1	known	missense	c.566	p.R189Q	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	KSR1	HGNC	ENSG00000141068				38	0	0	10	8	44.4444
SLC13A2	0	genome.wustl.edu	37	17	26821457	26821457	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	26821457	26821457	C	T	SNP	SLC13A2	ENST00000444914	human	ensembl	74_37	+1	known	missense	c.1382	p.T461M	0.034	pfam_Na/sul_symport	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	-	no_errors	SLC13A2	HGNC	ENSG00000007216				94	0	0	60	33	35.4839
TAOK1	0	genome.wustl.edu	37	17	27869581	27869581	+	Silent	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	27869581	27869581	T	C	SNP	TAOK1	ENST00000261716	human	ensembl	74_37	+1	known	silent	c.2547	p.I849	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Homeodomain-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TAOK1	HGNC	ENSG00000160551				110	0	0	93	26	21.8487
MYO1D	0	genome.wustl.edu	37	17	31087632	31087632	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	31087632	31087632	C	T	SNP	MYO1D	ENST00000318217	human	ensembl	74_37	-1	known	missense	c.1049	p.R350H	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO1D	HGNC	ENSG00000176658				82	0	0	53	26	32.9114
TMEM98	0	genome.wustl.edu	37	17	31260227	31260227	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	31260227	31260227	A	G	SNP	TMEM98	ENST00000394642	human	ensembl	74_37	+1	known	missense	c.167	p.Q56R	1.000	NULL	NULL	-	no_errors	TMEM98	HGNC	ENSG00000006042				87	0	0	50	20	28.5714
SLFN11	0	genome.wustl.edu	37	17	33679651	33679651	+	Silent	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	33679651	33679651	A	G	SNP	SLFN11	ENST00000308377	human	ensembl	74_37	-1	known	silent	c.2430	p.A810	0.998	superfamily_P-loop_NTPase	pfam_ATPase_AAA-4,pfam_DUF2075,superfamily_P-loop_NTPase	-	no_errors	SLFN11	HGNC	ENSG00000172716				65	0	0	44	16	26.6667
MYO19	0	genome.wustl.edu	37	17	34862834	34862834	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	34862834	34862834	A	G	SNP	MYO19	ENST00000431794	human	ensembl	74_37	-1	known	missense	c.1612	p.Y538H	0.767	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO19	HGNC	ENSG00000141140				18	0	0	6	6	50
LHX1	0	genome.wustl.edu	37	17	35298059	35298059	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	35298059	35298059	C	T	SNP	LHX1	ENST00000254457	human	ensembl	74_37	+1	known	missense	c.550	p.R184C	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LHX1	HGNC	ENSG00000132130				19	0	0	15	7	31.8182
HNF1B	0	genome.wustl.edu	37	17	36047354	36047354	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	36047354	36047354	G	A	SNP	HNF1B	ENST00000560016	human	ensembl	74_37	-1	novel	missense	c.1576	p.R526C	0.222	NULL	pfam_HNF1b_C,pfam_HNF-1_N,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_HNF1_dimer_dom,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	HNF1B	HGNC	ENSG00000108753				73	0	0	44	23	34.3284
CWC25	0	genome.wustl.edu	37	17	36958376	36958376	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	36958376	36958376	A	G	SNP	CWC25	ENST00000225428	human	ensembl	74_37	-1	known	missense	c.1247	p.V416A	0.095	NULL	pfam_CWC25,pfam_CIR_N_dom	-	no_errors	CWC25	HGNC	ENSG00000108296				48	0	0	24	13	35.1351
KRT39	0	genome.wustl.edu	37	17	39123064	39123064	+	Silent	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	39123064	39123064	T	C	SNP	KRT39	ENST00000355612	human	ensembl	74_37	-1	known	silent	c.45	p.P15	0.012	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT39	HGNC	ENSG00000196859				208	0	0	130	57	30.4813
DNAJC7	0	genome.wustl.edu	37	17	40152526	40152526	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	40152526	40152526	G	A	SNP	DNAJC7	ENST00000457167	human	ensembl	74_37	-1	known	missense	c.140	p.A47V	1.000	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,pfam_TPR_2,pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_TPR_repeat,smart_DnaJ_domain,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJC7	HGNC	ENSG00000168259				65	0	0	55	27	32.9268
MEOX1	0	genome.wustl.edu	37	17	41719304	41719304	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	41719304	41719304	A	C	SNP	MEOX1	ENST00000318579	human	ensembl	74_37	-1	known	missense	c.739	p.S247A	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	MEOX1	HGNC	ENSG00000005102				97	0	0	73	28	27.7228
SOST	0	genome.wustl.edu	37	17	41835990	41835990	+	Silent	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	41835990	41835990	G	A	SNP	SOST	ENST00000301691	human	ensembl	74_37	-1	known	silent	c.120	p.L40	0.412	pfam_Sclerostin/SOSTDC1	pfam_Sclerostin/SOSTDC1,pfam_DAN,smart_Cys_knot_C	-	no_errors	SOST	HGNC	ENSG00000167941				45	0	0	27	17	38.6364
SLC4A1	0	genome.wustl.edu	37	17	42328633	42328633	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	42328633	42328633	A	G	SNP	SLC4A1	ENST00000262418	human	ensembl	74_37	-1	known	missense	c.2549	p.V850A	1.000	tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange,prints_Anion_exchange_1,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A1	HGNC	ENSG00000004939				39	0	0	24	6	20
GPATCH8	0	genome.wustl.edu	37	17	42483368	42483368	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	42483368	42483368	A	G	SNP	GPATCH8	ENST00000591680	human	ensembl	74_37	-1	known	missense	c.544	p.S182P	1.000	NULL	pfam_G_patch_dom,pfam_Znf_C2H2_jaz,smart_G_patch_dom,pfscan_Znf_C2H2,pfscan_G_patch_dom	-	no_errors	GPATCH8	HGNC	ENSG00000186566				66	0	0	44	40	47.619
VMO1	0	genome.wustl.edu	37	17	4689224	4689224	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	4689224	4689224	C	T	SNP	VMO1	ENST00000441199	human	ensembl	74_37	-1	known	missense	c.319	p.A107T	0.000	NULL	pfam_VOMI,superfamily_VOMI	-	no_errors	VMO1	HGNC	ENSG00000182853				411	0	0	208	171	45.1187
SGCA	0	genome.wustl.edu	37	17	48245314	48245314	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	48245314	48245314	G	A	SNP	SGCA	ENST00000262018	human	ensembl	74_37	+1	known	missense	c.319	p.A107T	0.999	pfam_Sarcoglycan_2,superfamily_Cadherin-like,smart_Cadg	pfam_Sarcoglycan_2,superfamily_Cadherin-like,smart_Cadg	-	no_errors	SGCA	HGNC	ENSG00000108823				135	0	0	90	62	40.7895
ENO3	0	genome.wustl.edu	37	17	4858519	4858519	+	Silent	SNP	C	C	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	4858519	4858519	C	A	SNP	ENO3	ENST00000323997	human	ensembl	74_37	+1	known	silent	c.594	p.A198	0.995	pfam_Enolase_C,pirsf_Enolase,tigrfam_Enolase	pfam_Enolase_C,pfam_Enolase_N,pfam_MeAsp_NH4-lyase_C,pirsf_Enolase,prints_Enolase,tigrfam_Enolase	-	no_errors	ENO3	HGNC	ENSG00000108515				83	0	0	32	22	40.7407
SPATA20	0	genome.wustl.edu	37	17	48631632	48631632	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	48631632	48631632	A	G	SNP	SPATA20	ENST00000006658	human	ensembl	74_37	+1	known	missense	c.1978	p.S660G	1.000	NULL	pfam_DUF255,pfam_AGE/RnBP,superfamily_6-hairpin_glycosidase-like,superfamily_Thioredoxin-like_fold	-	no_errors	SPATA20	HGNC	ENSG00000006282				47	0	0	21	14	40
CACNA1G	0	genome.wustl.edu	37	17	48678110	48678110	+	Silent	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	48678110	48678110	G	A	SNP	CACNA1G	ENST00000359106	human	ensembl	74_37	+1	known	silent	c.3714	p.A1238	0.006	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1G	HGNC	ENSG00000006283				30	0	0	25	13	34.2105
CAMTA2	0	genome.wustl.edu	37	17	4889533	4889533	+	Silent	SNP	G	G	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	4889533	4889533	G	T	SNP	CAMTA2	ENST00000414043	human	ensembl	74_37	-1	known	silent	c.54	p.P18	1.000	NULL	pfam_CG-1_dom,pfam_IPT,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA2	HGNC	ENSG00000108509				18	0	0	10	9	47.3684
MPO	0	genome.wustl.edu	37	17	56355248	56355248	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	56355248	56355248	G	T	SNP	MPO	ENST00000340482	human	ensembl	74_37	-1	known	missense	c.1240	p.L414M	0.463	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	MPO	HGNC	ENSG00000005381				61	0	0	29	21	42
DDX42	0	genome.wustl.edu	37	17	61889307	61889307	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	61889307	61889307	A	G	SNP	DDX42	ENST00000389924	human	ensembl	74_37	+1	known	missense	c.1414	p.T472A	1.000	superfamily_P-loop_NTPase,smart_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX42	HGNC	ENSG00000198231				296	0	0	169	97	36.4662
FAM64A	0	genome.wustl.edu	37	17	6348605	6348605	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	6348605	6348605	G	A	SNP	FAM64A	ENST00000250056	human	ensembl	74_37	+1	known	missense	c.175	p.V59I	0.949	pfam_DUF1466	pfam_DUF1466	-	no_errors	FAM64A	HGNC	ENSG00000129195				39	0	0	20	12	37.5
BPTF	0	genome.wustl.edu	37	17	65944394	65944394	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	65944394	65944394	T	C	SNP	BPTF	ENST00000321892	human	ensembl	74_37	+1	known	missense	c.8276	p.L2759P	0.998	superfamily_Adenylate_cyclase-assoc_CAP_N	pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BPTF	HGNC	ENSG00000171634				49	0	0	53	11	17.1875
OTOP3	0	genome.wustl.edu	37	17	72943232	72943232	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	72943232	72943232	G	T	SNP	OTOP3	ENST00000328801	human	ensembl	74_37	+1	known	missense	c.1282	p.G428C	0.997	pfam_Otopetrin	pfam_Otopetrin	-	no_errors	OTOP3	HGNC	ENSG00000182938				55	0	0	24	22	47.8261
ITGB4	0	genome.wustl.edu	37	17	73748363	73748363	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	73748363	73748363	G	A	SNP	ITGB4	ENST00000200181	human	ensembl	74_37	+1	known	missense	c.3902	p.R1301H	0.909	pirsf_Integrin_bsu-4,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Integrin_bsu-4,pfam_Integrin_bsu_N,pfam_Fibronectin_type3,pfam_Calx_beta,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Fibronectin_type3,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,smart_Calx_beta,smart_Fibronectin_type3,prints_Integrin_bsu,pfscan_Fibronectin_type3	-	no_errors	ITGB4	HGNC	ENSG00000132470				94	0	0	66	34	34
ITGB4	0	genome.wustl.edu	37	17	73750720	73750720	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	73750720	73750720	T	C	SNP	ITGB4	ENST00000200181	human	ensembl	74_37	+1	known	missense	c.4382	p.M1461T	1.000	pirsf_Integrin_bsu-4	pirsf_Integrin_bsu-4,pfam_Integrin_bsu_N,pfam_Fibronectin_type3,pfam_Calx_beta,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Fibronectin_type3,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,smart_Calx_beta,smart_Fibronectin_type3,prints_Integrin_bsu,pfscan_Fibronectin_type3	-	no_errors	ITGB4	HGNC	ENSG00000132470				37	0	0	43	4	8.51064
TRIM65	0	genome.wustl.edu	37	17	73888350	73888350	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	73888350	73888350	G	A	SNP	TRIM65	ENST00000269383	human	ensembl	74_37	-1	known	nonsense	c.742	p.Q248*	1.000	NULL	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,pfam_Znf_B-box,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM65	HGNC	ENSG00000141569				19	0	0	8	12	60
EXOC7	0	genome.wustl.edu	37	17	74097459	74097459	+	Splice_Site	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	74097459	74097459	T	C	SNP	EXOC7	ENST00000335146	human	ensembl	74_37	-1	known	splice_site	c.312-2	e4-2	1.000	-	-	-	no_errors	EXOC7	HGNC	ENSG00000182473				72	0	0	48	21	30.4348
TBC1D16	0	genome.wustl.edu	37	17	77922698	77922698	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	77922698	77922698	T	C	SNP	TBC1D16	ENST00000310924	human	ensembl	74_37	-1	known	missense	c.1514	p.E505G	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D16	HGNC	ENSG00000167291				68	0	0	48	28	36.8421
RNF213	0	genome.wustl.edu	37	17	78321528	78321528	+	Silent	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	78321528	78321528	C	T	SNP	RNF213	ENST00000582970	human	ensembl	74_37	+1	known	silent	c.9393	p.L3131	0.003	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821				72	0	0	48	32	40
ALYREF	0	genome.wustl.edu	37	17	79846240	79846240	+	Silent	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	79846240	79846240	A	G	SNP	ALYREF	ENST00000505490	human	ensembl	74_37	-1	known	silent	c.657	p.G219	0.562	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	ALYREF	HGNC	ENSG00000183684				31	0	0	24	2	7.69231
OGFOD3	0	genome.wustl.edu	37	17	80369341	80369341	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	80369341	80369341	G	A	SNP	OGFOD3	ENST00000329197	human	ensembl	74_37	-1	known	missense	c.370	p.R124W	0.000	smart_Pro_4_hyd_alph	smart_Pro_4_hyd_alph	-	no_errors	OGFOD3	HGNC	ENSG00000181396				50	0	0	27	19	41.3043
HEXDC	0	genome.wustl.edu	37	17	80398968	80398968	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	80398968	80398968	C	A	SNP	HEXDC	ENST00000337014	human	ensembl	74_37	+1	known	missense	c.1078	p.P360T	0.000	NULL	pfam_Glyco_hydro_20_cat-core,superfamily_Glycoside_hydrolase_SF	-	no_errors	HEXDC	HGNC	ENSG00000169660				133	0	0	90	74	45.122
MYH10	0	genome.wustl.edu	37	17	8383818	8383818	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	8383818	8383818	G	A	SNP	MYH10	ENST00000396239	human	ensembl	74_37	-1	known	missense	c.5260	p.R1754C	1.000	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_HR1_rho-bd,superfamily_UBA-like,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH10	HGNC	ENSG00000133026				25	0	0	19	13	40.625
PIK3R6	0	genome.wustl.edu	37	17	8707380	8707380	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	8707380	8707380	C	T	SNP	PIK3R6	ENST00000311434	human	ensembl	74_37	-1	known	missense	c.2084	p.R695H	0.459	pfam_PI3K_1B_gamma_p101_su	pfam_PI3K_1B_gamma_p101_su	-	no_errors	PIK3R6	HGNC	ENSG00000174083				39	0	0	20	10	33.3333
RCVRN	0	genome.wustl.edu	37	17	9801318	9801318	+	RNA	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	9801318	9801318	C	T	SNP	RCVRN	ENST00000570909	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	RCVRN	HGNC	ENSG00000109047				29	0	0	24	12	33.3333
SEH1L	0	genome.wustl.edu	37	18	12955468	12955468	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	18	12955468	12955468	A	G	SNP	SEH1L	ENST00000399892	human	ensembl	74_37	+1	known	missense	c.169	p.S57G	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	SEH1L	HGNC	ENSG00000085415				106	1	0.934579	120	7	5.51181
LDLRAD4	0	genome.wustl.edu	37	18	13621221	13621221	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	18	13621221	13621221	T	C	SNP	LDLRAD4	ENST00000359446	human	ensembl	74_37	+1	known	missense	c.287	p.F96S	1.000	NULL	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	-	no_errors	LDLRAD4	HGNC	ENSG00000168675				62	0	0	40	25	38.4615
CHST9	0	genome.wustl.edu	37	18	24496988	24496988	+	Silent	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	18	24496988	24496988	G	A	SNP	CHST9	ENST00000284224	human	ensembl	74_37	-1	known	silent	c.567	p.Y189	0.013	NULL	pfam_Sulfotransferase	-	no_errors	CHST9	HGNC	ENSG00000154080				127	0	0	81	50	38.1679
DSC2	0	genome.wustl.edu	37	18	28654723	28654723	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	18	28654723	28654723	C	T	SNP	DSC2	ENST00000280904	human	ensembl	74_37	-1	known	missense	c.1814	p.G605D	0.947	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Cadherin/Desmocollin,prints_Desmosomal_cadherin	-	no_errors	DSC2	HGNC	ENSG00000134755				71	0	0	54	27	33.3333
LPIN2	0	genome.wustl.edu	37	18	2925364	2925364	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	18	2925364	2925364	G	A	SNP	LPIN2	ENST00000261596	human	ensembl	74_37	-1	known	missense	c.1796	p.P599L	0.030	NULL	pfam_LNS2,pfam_Lipin_N,superfamily_HAD-like_dom,smart_LNS2	-	no_errors	LPIN2	HGNC	ENSG00000101577				67	0	0	43	25	36.7647
TRAPPC8	0	genome.wustl.edu	37	18	29410772	29410772	+	Silent	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	18	29410772	29410772	A	G	SNP	TRAPPC8	ENST00000283351	human	ensembl	74_37	-1	known	silent	c.4254	p.F1418	1.000	NULL	NULL	-	no_errors	TRAPPC8	HGNC	ENSG00000153339				47	0	0	29	25	46.2963
ASXL3	0	genome.wustl.edu	37	18	31319536	31319536	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	18	31319536	31319536	C	A	SNP	ASXL3	ENST00000269197	human	ensembl	74_37	+1	known	missense	c.2168	p.P723H	1.000	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL3	HGNC	ENSG00000141431				335	0	0	189	96	33.6842
MOCOS	0	genome.wustl.edu	37	18	33800060	33800060	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	18	33800060	33800060	C	T	SNP	MOCOS	ENST00000261326	human	ensembl	74_37	+1	known	missense	c.1840	p.R614W	1.000	pfam_MOSC_N,superfamily_Pyrv_Knase-like_insert_dom	pfam_MOSC_N,pfam_MoCF_Sase_C,pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase,superfamily_Pyrv_Knase-like_insert_dom	-	no_errors	MOCOS	HGNC	ENSG00000075643				96	0	0	56	36	39.1304
PSTPIP2	0	genome.wustl.edu	37	18	43585486	43585486	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	18	43585486	43585486	T	C	SNP	PSTPIP2	ENST00000409746	human	ensembl	74_37	-1	known	missense	c.366	p.I122M	0.038	NULL	pfam_FCH_dom,smart_FCH_dom,pfscan_FCH_dom	-	no_errors	PSTPIP2	HGNC	ENSG00000152229				30	0	0	24	7	22.5806
CTIF	0	genome.wustl.edu	37	18	46385794	46385794	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	18	46385794	46385794	T	G	SNP	CTIF	ENST00000382998	human	ensembl	74_37	+1	known	missense	c.1667	p.M556R	1.000	pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	-	no_errors	CTIF	HGNC	ENSG00000134030				60	0	0	35	17	32.6923
MAPK4	0	genome.wustl.edu	37	18	48190611	48190611	+	Silent	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	18	48190611	48190611	C	T	SNP	MAPK4	ENST00000400384	human	ensembl	74_37	+1	known	silent	c.283	p.L95	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_MAPK_ERK3/4	-	no_errors	MAPK4	HGNC	ENSG00000141639				55	0	0	42	19	31.1475
ALPK2	0	genome.wustl.edu	37	18	56247010	56247010	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	18	56247010	56247010	G	A	SNP	ALPK2	ENST00000361673	human	ensembl	74_37	-1	known	missense	c.998	p.S333F	1.000	NULL	pfam_MHCK_EF2_kinase,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase,pfscan_Ig-like_dom	-	no_errors	ALPK2	HGNC	ENSG00000198796				134	0	0	109	19	14.8438
CCBE1	0	genome.wustl.edu	37	18	57103367	57103367	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	18	57103367	57103367	G	A	SNP	CCBE1	ENST00000439986	human	ensembl	74_37	-1	known	missense	c.994	p.P332S	1.000	pfam_Collagen	pfam_Collagen,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	-	no_errors	CCBE1	HGNC	ENSG00000183287				103	0	0	55	32	36.7816
CDH20	0	genome.wustl.edu	37	18	59157845	59157845	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	18	59157845	59157845	T	C	SNP	CDH20	ENST00000262717	human	ensembl	74_37	+1	known	missense	c.59	p.L20S	1.000	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH20	HGNC	ENSG00000101542				119	0	0	94	48	33.8028
CDH20	0	genome.wustl.edu	37	18	59221588	59221588	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	18	59221588	59221588	C	T	SNP	CDH20	ENST00000262717	human	ensembl	74_37	+1	known	missense	c.2066	p.A689V	1.000	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH20	HGNC	ENSG00000101542				40	0	0	26	17	39.5349
CDH20	0	genome.wustl.edu	37	18	59221697	59221697	+	Silent	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	18	59221697	59221697	C	T	SNP	CDH20	ENST00000262717	human	ensembl	74_37	+1	known	silent	c.2175	p.Y725	1.000	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH20	HGNC	ENSG00000101542				21	0	0	11	7	38.8889
CTDP1	0	genome.wustl.edu	37	18	77477859	77477859	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	18	77477859	77477859	G	A	SNP	CTDP1	ENST00000299543	human	ensembl	74_37	+1	known	missense	c.2260	p.A754T	0.000	pfam_FCP1_C	pfam_FCP1_C,pfam_NIF,superfamily_HAD-like_dom,superfamily_BRCT_dom,superfamily_Single_hybrid_motif,smart_NIF,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_NIF,tigrfam_FCP1_euk	-	no_errors	CTDP1	HGNC	ENSG00000060069				42	0	0	24	19	44.186
PTPRM	0	genome.wustl.edu	37	18	8076526	8076526	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	18	8076526	8076526	A	C	SNP	PTPRM	ENST00000400060	human	ensembl	74_37	+1	known	missense	c.1515	p.E505D	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRM	HGNC	ENSG00000173482				66	0	0	40	15	27.2727
RAB12	0	genome.wustl.edu	37	18	8633208	8633208	+	Silent	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	18	8633208	8633208	A	G	SNP	RAB12	ENST00000329286	human	ensembl	74_37	+1	known	silent	c.309	p.R103	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,pfam_Gtr1_RagA,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,pfam_Gtr1_RagA,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB12	HGNC	ENSG00000206418				101	0	0	109	7	6.03448
TYK2	0	genome.wustl.edu	37	19	10463629	10463629	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	19	10463629	10463629	C	T	SNP	TYK2	ENST00000264818	human	ensembl	74_37	-1	known	missense	c.3173	p.R1058H	0.996	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain,pfscan_Prot_kinase_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_TYK2_N	-	no_errors	TYK2	HGNC	ENSG00000105397				25	0	0	19	16	45.7143
SBNO2	0	genome.wustl.edu	37	19	1119609	1119609	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	19	1119609	1119609	G	A	SNP	SBNO2	ENST00000361757	human	ensembl	74_37	-1	known	missense	c.1279	p.P427S	1.000	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	SBNO2	HGNC	ENSG00000064932				13	0	0	4	4	50
KANK2	0	genome.wustl.edu	37	19	11304155	11304155	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	19	11304155	11304155	G	T	SNP	KANK2	ENST00000432929	human	ensembl	74_37	-1	known	missense	c.601	p.Q201K	1.000	NULL	pfam_Ankyrin_rpt,pfam_KN_motif,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KANK2	HGNC	ENSG00000197256				31	0	0	8	11	57.8947
RGL3	0	genome.wustl.edu	37	19	11508219	11508219	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	19	11508219	11508219	T	G	SNP	RGL3	ENST00000393423	human	ensembl	74_37	-1	known	missense	c.1819	p.S607R	0.001	NULL	pfam_RasGRF_CDC25,pfam_Ras-assoc,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RGL3	HGNC	ENSG00000205517				24	0	0	14	11	44
ZNF442	0	genome.wustl.edu	37	19	12460790	12460790	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	19	12460790	12460790	T	A	SNP	ZNF442	ENST00000242804	human	ensembl	74_37	-1	known	missense	c.1609	p.I537F	0.042	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF442	HGNC	ENSG00000198342				80	0	0	46	29	38.6667
C19orf57	0	genome.wustl.edu	37	19	14000035	14000035	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	19	14000035	14000035	A	G	SNP	C19orf57	ENST00000454313	human	ensembl	74_37	-1	known	missense	c.1634	p.L545P	0.786	NULL	NULL	-	no_errors	C19orf57	HGNC	ENSG00000132016				23	0	0	17	10	37.037
OR7C1	0	genome.wustl.edu	37	19	14910600	14910600	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	19	14910600	14910600	C	T	SNP	OR7C1	ENST00000248073	human	ensembl	74_37	-1	known	missense	c.349	p.V117M	0.002	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR7C1	HGNC	ENSG00000127530				90	0	0	59	30	33.7079
ANO8	0	genome.wustl.edu	37	19	17438659	17438659	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	19	17438659	17438659	C	T	SNP	ANO8	ENST00000159087	human	ensembl	74_37	-1	known	missense	c.2257	p.V753M	1.000	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO8	HGNC	ENSG00000074855				53	0	0	33	25	43.1034
UNC13A	0	genome.wustl.edu	37	19	17759368	17759368	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	19	17759368	17759368	G	A	SNP	UNC13A	ENST00000428389	human	ensembl	74_37	-1	known	missense	c.1952	p.T651M	0.998	pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd	pfam_Munc13_subgr_dom-2,pfam_C2_dom,pfam_Ca-dep_secretion_activator,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_dom,smart_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13A	HGNC	ENSG00000130477				45	0	0	30	17	36.1702
JSRP1	0	genome.wustl.edu	37	19	2255302	2255302	+	Silent	SNP	T	T	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	19	2255302	2255302	T	A	SNP	JSRP1	ENST00000300961	human	ensembl	74_37	-1	known	silent	c.12	p.T4	0.079	NULL	NULL	-	no_errors	JSRP1	HGNC	ENSG00000167476				13	0	0	10	7	41.1765
WDR88	0	genome.wustl.edu	37	19	33647411	33647411	+	Silent	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	19	33647411	33647411	T	C	SNP	WDR88	ENST00000355868	human	ensembl	74_37	+1	known	silent	c.960	p.H320	0.992	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_PQQ_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,smart_PQQ_beta_propeller_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR88	HGNC	ENSG00000166359				80	0	0	50	35	41.1765
FZR1	0	genome.wustl.edu	37	19	3527034	3527034	+	Nonsense_Mutation	SNP	C	C	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	19	3527034	3527034	C	G	SNP	FZR1	ENST00000395095	human	ensembl	74_37	+1	known	nonsense	c.444	p.Y148*	0.999	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	FZR1	HGNC	ENSG00000105325				67	0	0	53	8	13.1148
SBSN	0	genome.wustl.edu	37	19	36018750	36018750	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	19	36018750	36018750	G	A	SNP	SBSN	ENST00000452271	human	ensembl	74_37	-1	novel	missense	c.434	p.A145V	0.277	NULL	NULL	-	no_errors	SBSN	HGNC	ENSG00000189001				96	0	0	59	40	40.404
WDR62	0	genome.wustl.edu	37	19	36594075	36594075	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	19	36594075	36594075	G	T	SNP	WDR62	ENST00000401500	human	ensembl	74_37	+1	known	missense	c.3480	p.K1160N	0.005	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR62	HGNC	ENSG00000075702				46	0	0	20	15	42.8571
ZNF461	0	genome.wustl.edu	37	19	37130098	37130098	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	19	37130098	37130098	T	A	SNP	ZNF461	ENST00000588268	human	ensembl	74_37	-1	known	missense	c.1149	p.K383N	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF461	HGNC	ENSG00000197808				100	0	0	86	15	14.8515
ZNF568	0	genome.wustl.edu	37	19	37440970	37440970	+	Silent	SNP	T	T	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	19	37440970	37440970	T	G	SNP	ZNF568	ENST00000333987	human	ensembl	74_37	+1	known	silent	c.915	p.P305	0.084	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF568	HGNC	ENSG00000198453				58	0	0	35	16	31.3725
RYR1	0	genome.wustl.edu	37	19	39038982	39038982	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	19	39038982	39038982	G	T	SNP	RYR1	ENST00000359596	human	ensembl	74_37	+1	known	missense	c.12204	p.K4068N	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218				101	0	0	46	28	37.8378
ECH1	0	genome.wustl.edu	37	19	39322070	39322070	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	19	39322070	39322070	G	T	SNP	ECH1	ENST00000221418	human	ensembl	74_37	-1	known	missense	c.139	p.L47I	0.000	NULL	pfam_Crotonase_core_superfam	-	no_errors	ECH1	HGNC	ENSG00000104823				52	0	0	23	23	50
NFKBIB	0	genome.wustl.edu	37	19	39398268	39398268	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	19	39398268	39398268	G	A	SNP	NFKBIB	ENST00000313582	human	ensembl	74_37	+1	known	missense	c.938	p.S313N	0.997	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	NFKBIB	HGNC	ENSG00000104825				18	0	0	8	3	27.2727
C19orf47	0	genome.wustl.edu	37	19	40828262	40828262	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	19	40828262	40828262	G	T	SNP	C19orf47	ENST00000582783	human	ensembl	74_37	-1	known	missense	c.796	p.L266M	1.000	NULL	superfamily_SAM/pointed	-	no_errors	C19orf47	HGNC	ENSG00000160392				17	0	0	6	9	60
SYMPK	0	genome.wustl.edu	37	19	46351244	46351244	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	19	46351244	46351244	G	A	SNP	SYMPK	ENST00000245934	human	ensembl	74_37	-1	known	missense	c.442	p.R148W	0.949	pfam_DUF3453,superfamily_ARM-type_fold	pfam_DUF3453,pfam_Symplekin_C,superfamily_ARM-type_fold	-	no_errors	SYMPK	HGNC	ENSG00000125755				31	0	0	20	11	35.4839
PGLYRP1	0	genome.wustl.edu	37	19	46522617	46522617	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	19	46522617	46522617	G	A	SNP	PGLYRP1	ENST00000008938	human	ensembl	74_37	-1	known	missense	c.470	p.A157V	0.000	pfam_Amidase_domain,superfamily_Amidase_domain,smart_PGRP_domain_met/bac,smart_Amidase_domain,pirsf_Peptidoglycan_recognition	pfam_Amidase_domain,superfamily_Amidase_domain,smart_PGRP_domain_met/bac,smart_Amidase_domain,pirsf_Peptidoglycan_recognition	-	no_errors	PGLYRP1	HGNC	ENSG00000008438				22	0	0	24	15	38.4615
PNMAL2	0	genome.wustl.edu	37	19	46998154	46998154	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	19	46998154	46998154	G	A	SNP	PNMAL2	ENST00000599531	human	ensembl	74_37	-1	known	missense	c.569	p.A190V	0.000	NULL	NULL	-	no_errors	PNMAL2	HGNC	ENSG00000204851				43	0	0	34	20	37.037
CCDC114	0	genome.wustl.edu	37	19	48807230	48807230	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	19	48807230	48807230	A	G	SNP	CCDC114	ENST00000315396	human	ensembl	74_37	-1	known	missense	c.722	p.L241P	0.038	NULL	NULL	-	no_errors	CCDC114	HGNC	ENSG00000105479				57	0	0	38	23	37.7049
TRPM4	0	genome.wustl.edu	37	19	49674945	49674945	+	Silent	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	19	49674945	49674945	T	C	SNP	TRPM4	ENST00000252826	human	ensembl	74_37	+1	known	silent	c.969	p.S323	0.228	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM4	HGNC	ENSG00000130529				41	0	0	27	5	15.625
PTOV1	0	genome.wustl.edu	37	19	50363375	50363375	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	19	50363375	50363375	C	T	SNP	PTOV1	ENST00000391842	human	ensembl	74_37	+1	known	missense	c.1174	p.R392C	0.998	pfam_Mediator_Med25	pfam_Mediator_Med25	-	no_errors	PTOV1	HGNC	ENSG00000104960				45	0	0	30	25	45.4545
NUP62	0	genome.wustl.edu	37	19	50412513	50412513	+	Silent	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	19	50412513	50412513	T	C	SNP	NUP62	ENST00000352066	human	ensembl	74_37	-1	known	silent	c.552	p.A184	0.000	NULL	pfam_Nucleoporin_NSP1_C	-	no_errors	NUP62	HGNC	ENSG00000213024				45	0	0	25	18	41.8605
NR1H2	0	genome.wustl.edu	37	19	50882025	50882025	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	19	50882025	50882025	G	A	SNP	NR1H2	ENST00000253727	human	ensembl	74_37	+1	known	missense	c.719	p.R240H	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Liver_X_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Ecdystd_rcpt,prints_ThyrH_rcpt	-	no_errors	NR1H2	HGNC	ENSG00000131408				53	0	0	28	35	55.5556
FAM71E1	0	genome.wustl.edu	37	19	50970986	50970986	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	19	50970986	50970986	G	A	SNP	FAM71E1	ENST00000600100	human	ensembl	74_37	-1	known	missense	c.640	p.R214W	0.977	pfam_DUF3699	pfam_DUF3699	-	no_errors	FAM71E1	HGNC	ENSG00000142530				10	0	0	3	3	50
SHANK1	0	genome.wustl.edu	37	19	51165362	51165362	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	19	51165362	51165362	G	A	SNP	SHANK1	ENST00000391814	human	ensembl	74_37	-1	known	nonsense	c.6370	p.R2124*	1.000	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SH3_2,pfam_SAM_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SH3_domain,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK1	HGNC	ENSG00000161681				31	0	0	16	13	44.8276
SHANK1	0	genome.wustl.edu	37	19	51190039	51190039	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	19	51190039	51190039	C	T	SNP	SHANK1	ENST00000391814	human	ensembl	74_37	-1	known	missense	c.2444	p.S815N	1.000	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SH3_2,pfam_SAM_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SH3_domain,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK1	HGNC	ENSG00000161681				22	0	0	18	10	35.7143
SHANK1	0	genome.wustl.edu	37	19	51191203	51191203	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	19	51191203	51191203	A	G	SNP	SHANK1	ENST00000391814	human	ensembl	74_37	-1	known	missense	c.2285	p.M762T	1.000	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SH3_2,pfam_SAM_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SH3_domain,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK1	HGNC	ENSG00000161681				40	0	0	31	15	32.6087
PTPRS	0	genome.wustl.edu	37	19	5286136	5286136	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	19	5286136	5286136	C	A	SNP	PTPRS	ENST00000372412	human	ensembl	74_37	-1	known	missense	c.16	p.G6C	0.735	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom	-	no_errors	PTPRS	HGNC	ENSG00000105426				28	0	0	13	11	45.8333
NLRP12	0	genome.wustl.edu	37	19	54314476	54314476	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	19	54314476	54314476	C	T	SNP	NLRP12	ENST00000324134	human	ensembl	74_37	-1	known	missense	c.437	p.R146H	0.176	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP12	HGNC	ENSG00000142405				116	1	0.854701	89	13	12.7451
GP6	0	genome.wustl.edu	37	19	55530055	55530055	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	19	55530055	55530055	A	G	SNP	GP6	ENST00000310373	human	ensembl	74_37	-1	known	missense	c.689	p.L230P	0.000	NULL	smart_Ig_sub,smart_Ig_sub2	-	no_errors	GP6	HGNC	ENSG00000088053				90	0	0	75	36	32.4324
BRSK1	0	genome.wustl.edu	37	19	55812988	55812988	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	19	55812988	55812988	A	G	SNP	BRSK1	ENST00000590333	human	ensembl	74_37	+1	known	missense	c.835	p.R279G	0.029	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	BRSK1	HGNC	ENSG00000160469				18	0	0	14	6	30
GTF2F1	0	genome.wustl.edu	37	19	6381412	6381412	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	19	6381412	6381412	C	T	SNP	GTF2F1	ENST00000394456	human	ensembl	74_37	-1	known	missense	c.976	p.E326K	1.000	pfam_TFIIF-alpha	pfam_TFIIF-alpha,superfamily_TFIIF_interaction	-	no_errors	GTF2F1	HGNC	ENSG00000125651				22	0	0	15	8	34.7826
ARHGEF18	0	genome.wustl.edu	37	19	7518449	7518449	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	19	7518449	7518449	G	A	SNP	ARHGEF18	ENST00000359920	human	ensembl	74_37	+1	known	missense	c.1388	p.G463D	1.000	superfamily_DH-domain	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF18	HGNC	ENSG00000104880				72	0	0	51	34	40
MCOLN1	0	genome.wustl.edu	37	19	7598461	7598461	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	19	7598461	7598461	A	G	SNP	MCOLN1	ENST00000264079	human	ensembl	74_37	+1	known	missense	c.1628	p.Q543R	1.000	NULL	pfam_PKD1_2_channel,superfamily_Glycoside_hydrolase_SF	-	no_errors	MCOLN1	HGNC	ENSG00000090674				22	0	0	12	9	42.8571
CLEC4M	0	genome.wustl.edu	37	19	7830511	7830511	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	19	7830511	7830511	C	T	SNP	CLEC4M	ENST00000359059	human	ensembl	74_37	+1	known	missense	c.139	p.L47F	0.000	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	CLEC4M	HGNC	ENSG00000104938				71	0	0	63	7	10
TIMM44	0	genome.wustl.edu	37	19	7998751	7998751	+	Silent	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	19	7998751	7998751	G	A	SNP	TIMM44	ENST00000270538	human	ensembl	74_37	-1	known	silent	c.681	p.N227	0.898	pirsf_Tim44,tigrfam_Tim44	pfam_Tim44-like_dom,smart_Tim44-like_dom,pirsf_Tim44,tigrfam_Tim44	-	no_errors	TIMM44	HGNC	ENSG00000104980				62	0	0	41	20	32.7869
FBN3	0	genome.wustl.edu	37	19	8176624	8176624	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	19	8176624	8176624	C	T	SNP	FBN3	ENST00000270509	human	ensembl	74_37	-1	known	missense	c.3992	p.R1331Q	0.716	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_FBN,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449				35	0	0	22	11	33.3333
ZNF699	0	genome.wustl.edu	37	19	9406969	9406969	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	19	9406969	9406969	C	T	SNP	ZNF699	ENST00000308650	human	ensembl	74_37	-1	known	missense	c.1111	p.A371T	0.215	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF699	HGNC	ENSG00000196110				65	0	0	37	24	39.3443
CHST10	0	genome.wustl.edu	37	2	101010201	101010201	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	101010201	101010201	C	T	SNP	CHST10	ENST00000542617	human	ensembl	74_37	-1	known	missense	c.721	p.E241K	1.000	pfam_Sulfotransferase,superfamily_P-loop_NTPase	pfam_Sulfotransferase,superfamily_P-loop_NTPase	-	no_errors	CHST10	HGNC	ENSG00000115526				68	0	0	43	38	46.9136
TBC1D8	0	genome.wustl.edu	37	2	101656720	101656720	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	101656720	101656720	G	A	SNP	TBC1D8	ENST00000409318	human	ensembl	74_37	-1	known	missense	c.1000	p.R334W	0.607	pfam_GRAM,smart_GRAM	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D8	HGNC	ENSG00000204634				77	0	0	47	29	38.1579
RANBP2	0	genome.wustl.edu	37	2	109400209	109400209	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	109400209	109400209	T	C	SNP	RANBP2	ENST00000283195	human	ensembl	74_37	+1	known	missense	c.9527	p.L3176P	1.000	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	pfam_Ran_bind_dom,pfam_Znf_RanBP2,pfam_IR1-M,pfam_Cyclophilin-like_PPIase_dom,pfam_TPR_1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,smart_Ran_bind_dom,smart_Znf_RanBP2,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RanBP2,pfscan_Cyclophilin-like_PPIase_dom,pfscan_Ran_bind_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	RANBP2	HGNC	ENSG00000153201				92	0	0	58	46	44.2308
SEPT10	0	genome.wustl.edu	37	2	110332309	110332309	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	110332309	110332309	A	G	SNP	SEPT10	ENST00000397712	human	ensembl	74_37	-1	known	missense	c.449	p.F150S	1.000	pfam_Cell_div_GTP-bd,superfamily_P-loop_NTPase,pirsf_Septin	pfam_Cell_div_GTP-bd,superfamily_P-loop_NTPase,pirsf_Septin	-	no_errors	SEPT10	HGNC	ENSG00000186522				77	0	0	43	30	41.0959
GREB1	0	genome.wustl.edu	37	2	11755363	11755363	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	11755363	11755363	A	G	SNP	GREB1	ENST00000234142	human	ensembl	74_37	+1	known	missense	c.3269	p.D1090G	1.000	NULL	superfamily_P-loop_NTPase	-	no_errors	GREB1	HGNC	ENSG00000196208				30	0	0	24	4	14.2857
MAP3K2	0	genome.wustl.edu	37	2	128065338	128065338	+	Silent	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	128065338	128065338	C	T	SNP	MAP3K2	ENST00000344908	human	ensembl	74_37	-1	known	silent	c.1677	p.P559	0.194	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_OPR_PB1,superfamily_Kinase-like_dom,smart_OPR_PB1,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K2	HGNC	ENSG00000169967				24	0	0	10	9	47.3684
WDR33	0	genome.wustl.edu	37	2	128477098	128477098	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	128477098	128477098	C	T	SNP	WDR33	ENST00000322313	human	ensembl	74_37	-1	known	missense	c.2501	p.R834Q	0.976	NULL	pfam_WD40_repeat,pfam_Collagen,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR33	HGNC	ENSG00000136709				42	0	0	24	12	33.3333
POTEF	0	genome.wustl.edu	37	2	130832662	130832662	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	130832662	130832662	G	A	SNP	POTEF	ENST00000357462	human	ensembl	74_37	-1	known	missense	c.2383	p.R795C	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Actin-related,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Actin-related	-	no_errors	POTEF	HGNC	ENSG00000196604				133	0	0	91	52	36.3636
PLEKHB2	0	genome.wustl.edu	37	2	131890528	131890528	+	Silent	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	131890528	131890528	T	C	SNP	PLEKHB2	ENST00000303908	human	ensembl	74_37	+1	known	silent	c.387	p.P129	0.133	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHB2	HGNC	ENSG00000115762				69	0	0	46	24	34.2857
GPR39	0	genome.wustl.edu	37	2	133174707	133174707	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	133174707	133174707	T	C	SNP	GPR39	ENST00000329321	human	ensembl	74_37	+1	known	missense	c.92	p.I31T	1.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR39	HGNC	ENSG00000183840				80	0	0	42	19	31.1475
PRPF40A	0	genome.wustl.edu	37	2	153533090	153533090	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	153533090	153533090	G	C	SNP	PRPF40A	ENST00000410080	human	ensembl	74_37	-1	known	missense	c.860	p.P287R	1.000	NULL	pfam_FF_domain,pfam_WW_dom,superfamily_FF_domain,superfamily_WW_dom,smart_WW_dom,smart_FF_domain,pfscan_WW_dom,prints_Antifreeze_1	-	no_errors	PRPF40A	HGNC	ENSG00000196504				14	0	0	3	2	40
PXDN	0	genome.wustl.edu	37	2	1647304	1647304	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	1647304	1647304	G	C	SNP	PXDN	ENST00000252804	human	ensembl	74_37	-1	known	missense	c.3788	p.T1263S	1.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDN	HGNC	ENSG00000130508				49	0	0	33	18	35.2941
SCN2A	0	genome.wustl.edu	37	2	166246213	166246213	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	166246213	166246213	C	T	SNP	SCN2A	ENST00000283256	human	ensembl	74_37	+1	known	missense	c.5897	p.T1966M	1.000	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531				70	0	0	60	28	31.8182
XIRP2	0	genome.wustl.edu	37	2	168108385	168108385	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	168108385	168108385	G	A	SNP	XIRP2	ENST00000295237	human	ensembl	74_37	+1	known	missense	c.10483	p.G3495R	1.000	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP2	HGNC	ENSG00000163092				90	0	0	63	32	33.6842
MYO3B	0	genome.wustl.edu	37	2	171242744	171242744	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	171242744	171242744	G	A	SNP	MYO3B	ENST00000334231	human	ensembl	74_37	+1	known	missense	c.1363	p.A455T	0.998	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3B	HGNC	ENSG00000071909				33	0	0	32	15	31.9149
DCAF17	0	genome.wustl.edu	37	2	172337802	172337802	+	RNA	SNP	T	T	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	172337802	172337802	T	A	SNP	DCAF17	ENST00000468592	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DCAF17	HGNC	ENSG00000115827				14	0	0	7	6	46.1538
DYNC1I2	0	genome.wustl.edu	37	2	172546719	172546719	+	Silent	SNP	G	G	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	172546719	172546719	G	T	SNP	DYNC1I2	ENST00000397119	human	ensembl	74_37	+1	known	silent	c.54	p.L18	1.000	NULL	pfam_Dynein_IC_1/2,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DYNC1I2	HGNC	ENSG00000077380				14	0	0	12	10	45.4545
SLC25A12	0	genome.wustl.edu	37	2	172650186	172650186	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	172650186	172650186	A	T	SNP	SLC25A12	ENST00000422440	human	ensembl	74_37	-1	known	missense	c.1397	p.V466D	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A12	HGNC	ENSG00000115840				70	0	0	47	31	39.7436
GEN1	0	genome.wustl.edu	37	2	17962826	17962826	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	17962826	17962826	A	G	SNP	GEN1	ENST00000317402	human	ensembl	74_37	+1	known	missense	c.2347	p.M783V	0.000	NULL	pfam_XPG-I_dom,pfam_XPG_DNA_repair_N,superfamily_5-3_exonuclease_C,smart_XPG_DNA_repair_N,smart_XPG-I_dom,smart_HhH2,prints_XPG/Rad2	-	no_errors	GEN1	HGNC	ENSG00000178295				94	0	0	51	42	45.1613
MSTN	0	genome.wustl.edu	37	2	190925074	190925074	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	190925074	190925074	G	A	SNP	MSTN	ENST00000260950	human	ensembl	74_37	-1	known	missense	c.461	p.A154V	1.000	pfam_TGF-b_N	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	MSTN	HGNC	ENSG00000138379				89	0	0	46	37	44.5783
KCTD18	0	genome.wustl.edu	37	2	201355178	201355178	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	201355178	201355178	G	A	SNP	KCTD18	ENST00000359878	human	ensembl	74_37	-1	known	missense	c.926	p.A309V	0.000	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold	-	no_errors	KCTD18	HGNC	ENSG00000155729				42	0	0	19	10	34.4828
CASP8	0	genome.wustl.edu	37	2	202149988	202149988	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	202149988	202149988	G	T	SNP	CASP8	ENST00000358485	human	ensembl	74_37	+1	known	nonsense	c.1429	p.G477*	1.000	pfam_Pept_C14_caspase,smart_Pept_C14A_p45_core,pfscan_Pept_C14_p10,prints_Pept_C14A_p45_core	pfam_DED,pfam_Pept_C14_caspase,superfamily_DEATH-like_dom,smart_DED,smart_Pept_C14A_p45_core,pfscan_DED,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14A_p45_core	-	no_errors	CASP8	HGNC	ENSG00000064012				86	0	0	39	24	38.0952
NRP2	0	genome.wustl.edu	37	2	206641015	206641015	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	206641015	206641015	C	A	SNP	NRP2	ENST00000272849	human	ensembl	74_37	+1	known	missense	c.2486	p.P829H	1.000	pirsf_Neuropilin,pfam_Neuropilin1_C	pirsf_Neuropilin,pfam_CUB_dom,pfam_Coagulation_fac_5/8-C_type_dom,pfam_Neuropilin1_C,pfam_MAM_dom,superfamily_Galactose-bd-like,superfamily_CUB_dom,superfamily_ConA-like_lec_gl_sf,smart_CUB_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_MAM_dom,prints_MAM_dom,pfscan_CUB_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_MAM_dom	-	no_errors	NRP2	HGNC	ENSG00000118257				59	0	0	41	21	33.871
ZDBF2	0	genome.wustl.edu	37	2	207174987	207174987	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	207174987	207174987	C	T	SNP	ZDBF2	ENST00000374423	human	ensembl	74_37	+1	known	missense	c.5735	p.A1912V	0.997	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186				96	0	0	63	47	42.7273
METTL21A	0	genome.wustl.edu	37	2	208477826	208477826	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	208477826	208477826	C	T	SNP	METTL21A	ENST00000406927	human	ensembl	74_37	-1	known	missense	c.601	p.E201K	0.215	NULL	pfam_Nicotinamide_N-MeTfrase-like,pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_Small_mtfrase_dom	-	no_errors	METTL21A	HGNC	ENSG00000144401				127	0	0	139	17	10.8974
UNC80	0	genome.wustl.edu	37	2	210650864	210650864	+	Silent	SNP	A	A	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	210650864	210650864	A	T	SNP	UNC80	ENST00000439458	human	ensembl	74_37	+1	known	silent	c.675	p.G225	1.000	NULL	NULL	-	no_errors	UNC80	HGNC	ENSG00000144406				58	0	0	70	7	9.09091
ERBB4	0	genome.wustl.edu	37	2	212285296	212285296	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	212285296	212285296	T	C	SNP	ERBB4	ENST00000342788	human	ensembl	74_37	-1	known	missense	c.3005	p.K1002R	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,superfamily_Kinase-like_dom	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB4	HGNC	ENSG00000178568				53	0	0	46	4	8
BARD1	0	genome.wustl.edu	37	2	215645475	215645475	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	215645475	215645475	T	C	SNP	BARD1	ENST00000260947	human	ensembl	74_37	-1	known	missense	c.1123	p.T375A	0.004	NULL	pfam_Ankyrin_rpt,pfam_BRCT_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_BRCT_dom,smart_Ankyrin_rpt,smart_BRCT_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BRCT_dom,pfscan_Znf_RING,prints_Ankyrin_rpt	-	no_errors	BARD1	HGNC	ENSG00000138376				92	0	0	58	39	40.2062
MARCH4	0	genome.wustl.edu	37	2	217234942	217234942	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	217234942	217234942	G	C	SNP	MARCH4	ENST00000273067	human	ensembl	74_37	-1	known	missense	c.42	p.C14W	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH	-	no_errors	MARCH4	HGNC	ENSG00000144583				12	0	0	9	8	47.0588
TMEM198	0	genome.wustl.edu	37	2	220414535	220414535	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	220414535	220414535	G	T	SNP	TMEM198	ENST00000344458	human	ensembl	74_37	+1	known	nonsense	c.1042	p.G348*	0.748	NULL	NULL	-	no_errors	TMEM198	HGNC	ENSG00000188760				57	0	0	37	24	39.3443
TRIP12	0	genome.wustl.edu	37	2	230652352	230652352	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	230652352	230652352	G	A	SNP	TRIP12	ENST00000283943	human	ensembl	74_37	-1	known	missense	c.4639	p.R1547W	1.000	NULL	pfam_HECT,superfamily_HECT,superfamily_ARM-type_fold,smart_HECT,pfscan_HECT,pfscan_WWE-dom	-	no_errors	TRIP12	HGNC	ENSG00000153827				35	0	0	32	19	37.2549
ACKR3	0	genome.wustl.edu	37	2	237489246	237489246	+	Silent	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	237489246	237489246	G	A	SNP	ACKR3	ENST00000272928	human	ensembl	74_37	+1	known	silent	c.138	p.T46	0.997	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_CXCR7,prints_GPCR_Rhodpsn,prints_ATII_rcpt,prints_Formyl_pep_rcpt	-	no_errors	ACKR3	HGNC	ENSG00000144476				27	0	0	22	14	38.8889
PER2	0	genome.wustl.edu	37	2	239159277	239159277	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	239159277	239159277	T	C	SNP	PER2	ENST00000254657	human	ensembl	74_37	-1	known	missense	c.3382	p.I1128V	0.989	pfam_Period_circadian-like_C	pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,superfamily_PAS,smart_PAS,pfscan_PAS	-	no_errors	PER2	HGNC	ENSG00000132326				67	0	0	34	8	19.0476
KIF1A	0	genome.wustl.edu	37	2	241700703	241700703	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	241700703	241700703	C	A	SNP	KIF1A	ENST00000498729	human	ensembl	74_37	-1	known	missense	c.2208	p.W736C	1.000	NULL	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_Pleckstrin_homology,pfam_KIF1B,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,smart_Pleckstrin_homology,pfscan_FHA_dom,pfscan_Pleckstrin_homology,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1A	HGNC	ENSG00000130294				84	0	0	62	35	36.0825
KIF1A	0	genome.wustl.edu	37	2	241726673	241726673	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	241726673	241726673	C	T	SNP	KIF1A	ENST00000498729	human	ensembl	74_37	-1	known	missense	c.424	p.V142M	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_Pleckstrin_homology,pfam_KIF1B,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,smart_Pleckstrin_homology,pfscan_FHA_dom,pfscan_Pleckstrin_homology,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1A	HGNC	ENSG00000130294				46	0	0	19	21	52.5
DPYSL5	0	genome.wustl.edu	37	2	27157527	27157527	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	27157527	27157527	C	T	SNP	DPYSL5	ENST00000288699	human	ensembl	74_37	+1	known	missense	c.872	p.A291V	0.999	pfam_Amidohydro_1,tigrfam_Hydantoinase/dihydroPyrase	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	DPYSL5	HGNC	ENSG00000157851				213	0	0	114	95	45.4545
WDR43	0	genome.wustl.edu	37	2	29135551	29135551	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	29135551	29135551	T	G	SNP	WDR43	ENST00000407426	human	ensembl	74_37	+1	known	missense	c.581	p.V194G	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_SSU_processome_Utp12,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR43	HGNC	ENSG00000163811				78	0	0	37	32	46.3768
C2orf71	0	genome.wustl.edu	37	2	29293519	29293519	+	Silent	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	29293519	29293519	C	T	SNP	C2orf71	ENST00000331664	human	ensembl	74_37	-1	known	silent	c.3609	p.P1203	0.000	NULL	NULL	-	no_errors	C2orf71	HGNC	ENSG00000179270				36	0	0	24	18	42.8571
CEBPZ	0	genome.wustl.edu	37	2	37455474	37455474	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	37455474	37455474	T	C	SNP	CEBPZ	ENST00000234170	human	ensembl	74_37	-1	known	missense	c.862	p.T288A	1.000	NULL	pfam_CCAAT-binding_factor,superfamily_ARM-type_fold	-	no_errors	CEBPZ	HGNC	ENSG00000115816				52	0	0	48	4	7.69231
SRSF7	0	genome.wustl.edu	37	2	38977264	38977264	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	38977264	38977264	T	C	SNP	SRSF7	ENST00000313117	human	ensembl	74_37	-1	known	missense	c.101	p.Y34C	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,superfamily_Znf_CCHC,smart_RRM_dom,pfscan_Znf_CCHC,pfscan_RRM_dom	-	no_errors	SRSF7	HGNC	ENSG00000115875				83	0	0	66	40	37.7358
THUMPD2	0	genome.wustl.edu	37	2	39996850	39996850	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	39996850	39996850	C	A	SNP	THUMPD2	ENST00000505747	human	ensembl	74_37	-1	known	missense	c.672	p.Q224H	1.000	pfam_THUMP,smart_THUMP,pfscan_THUMP	pfam_RNA_methylase_dom,pfam_Methyltransf_11,pfam_THUMP,pfam_Small_mtfrase_dom,pfam_UbiE/COQ5_MeTrFase,smart_THUMP,pfscan_THUMP	-	no_errors	THUMPD2	HGNC	ENSG00000138050				99	0	0	51	31	37.8049
PKDCC	0	genome.wustl.edu	37	2	42275917	42275917	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	42275917	42275917	C	T	SNP	PKDCC	ENST00000294964	human	ensembl	74_37	+1	known	missense	c.578	p.A193V	1.000	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,pfscan_Prot_kinase_dom	-	no_errors	PKDCC	HGNC	ENSG00000162878				8	0	0	3	5	62.5
PKDCC	0	genome.wustl.edu	37	2	42284800	42284800	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	42284800	42284800	A	G	SNP	PKDCC	ENST00000294964	human	ensembl	74_37	+1	known	missense	c.1454	p.K485R	1.000	pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,pfscan_Prot_kinase_dom	-	no_errors	PKDCC	HGNC	ENSG00000162878				47	0	0	20	17	45.9459
EML6	0	genome.wustl.edu	37	2	55130609	55130609	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	55130609	55130609	T	C	SNP	EML6	ENST00000356458	human	ensembl	74_37	+1	novel	missense	c.3379	p.Y1127H	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,pfam_HELP,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML6	HGNC	ENSG00000214595				13	0	0	13	8	38.0952
PAPOLG	0	genome.wustl.edu	37	2	61022147	61022147	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	61022147	61022147	C	T	SNP	PAPOLG	ENST00000238714	human	ensembl	74_37	+1	known	missense	c.2104	p.R702C	1.000	NULL	pfam_PolA_pol_cen_dom,pfam_PolA_pol_RNA-bd_dom,pfam_Nucleotidyltransferase,superfamily_NuclTrfase_I_C,pirsf_PolyA_polymerase	-	no_errors	PAPOLG	HGNC	ENSG00000115421				75	0	0	56	30	34.8837
XPO1	0	genome.wustl.edu	37	2	61721063	61721063	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	61721063	61721063	G	T	SNP	XPO1	ENST00000401558	human	ensembl	74_37	-1	known	missense	c.1211	p.P404H	1.000	superfamily_ARM-type_fold	pfam_CRM1_C_dom,pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	XPO1	HGNC	ENSG00000082898				320	1	0.311526	207	106	33.8658
PELI1	0	genome.wustl.edu	37	2	64327600	64327600	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	64327600	64327600	A	G	SNP	PELI1	ENST00000358912	human	ensembl	74_37	-1	known	missense	c.235	p.Y79H	0.997	pfam_Pellino_fam	pfam_Pellino_fam	-	no_errors	PELI1	HGNC	ENSG00000197329				119	0	0	76	52	40.625
MPHOSPH10	0	genome.wustl.edu	37	2	71377061	71377061	+	Silent	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	71377061	71377061	A	G	SNP	MPHOSPH10	ENST00000244230	human	ensembl	74_37	+1	known	silent	c.1962	p.V654	0.141	pfam_Mpp10,pirsf_snoRNP_Mpp10	pfam_Mpp10,pirsf_snoRNP_Mpp10	-	no_errors	MPHOSPH10	HGNC	ENSG00000124383				61	0	0	42	37	46.8354
ALMS1	0	genome.wustl.edu	37	2	73678505	73678505	+	Silent	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	73678505	73678505	C	T	SNP	ALMS1	ENST00000264448	human	ensembl	74_37	+1	known	silent	c.4848	p.S1616	0.000	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127				118	0	0	47	51	52.0408
LOXL3	0	genome.wustl.edu	37	2	74776634	74776634	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	74776634	74776634	G	A	SNP	LOXL3	ENST00000264094	human	ensembl	74_37	-1	known	missense	c.554	p.T185M	0.989	pfam_SRCR,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_Lysyl_oxidase,pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_Lysyl_oxidase,prints_SRCR	-	no_errors	LOXL3	HGNC	ENSG00000115318				16	0	0	8	8	50
KCMF1	0	genome.wustl.edu	37	2	85280273	85280273	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	85280273	85280273	T	C	SNP	KCMF1	ENST00000409785	human	ensembl	74_37	+1	known	missense	c.887	p.L296S	1.000	NULL	pfam_Znf_ZZ,pfam_Di19_Zn_binding,smart_Znf_ZZ,smart_Znf_C2H2-like,pfscan_Znf_ZZ,pfscan_Znf_C2H2	-	no_errors	KCMF1	HGNC	ENSG00000176407				27	0	0	17	6	26.087
POLR1A	0	genome.wustl.edu	37	2	86315957	86315957	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	86315957	86315957	C	A	SNP	POLR1A	ENST00000263857	human	ensembl	74_37	-1	known	missense	c.577	p.A193S	0.233	pfam_RNA_pol_Rpb1_1	pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,pfam_RNA_pol_Rpb1_1,smart_RNA_pol_N	-	no_errors	POLR1A	HGNC	ENSG00000068654				74	0	0	40	43	51.8072
ARID5A	0	genome.wustl.edu	37	2	97217702	97217702	+	Silent	SNP	A	A	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	97217702	97217702	A	C	SNP	ARID5A	ENST00000357485	human	ensembl	74_37	+1	known	silent	c.1437	p.A479	0.004	NULL	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID5A	HGNC	ENSG00000196843				13	0	0	7	4	36.3636
BTBD3	0	genome.wustl.edu	37	20	11898985	11898985	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	20	11898985	11898985	C	T	SNP	BTBD3	ENST00000378226	human	ensembl	74_37	+1	known	missense	c.62	p.T21M	1.000	NULL	pfam_PHR,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD3	HGNC	ENSG00000132640				288	0	0	303	121	28.5377
DTD1	0	genome.wustl.edu	37	20	18608856	18608856	+	Silent	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	20	18608856	18608856	T	C	SNP	DTD1	ENST00000377452	human	ensembl	74_37	+1	known	silent	c.456	p.T152	0.002	NULL	pfam_DTyrtRNA_deacyls,superfamily_DTD-like_dom,tigrfam_DTyrtRNA_deacyls	-	no_errors	DTD1	HGNC	ENSG00000125821				45	0	0	40	7	14.8936
GZF1	0	genome.wustl.edu	37	20	23345800	23345800	+	Silent	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	20	23345800	23345800	T	C	SNP	GZF1	ENST00000338121	human	ensembl	74_37	+1	known	silent	c.780	p.C260	0.000	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	GZF1	HGNC	ENSG00000125812				88	0	0	90	5	5.26316
NCOR1P1	0	genome.wustl.edu	37	20	26084304	26084304	+	RNA	SNP	G	G	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	20	26084304	26084304	G	T	SNP	NCOR1P1	ENST00000478176	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.994	-	-	-	no_errors	NCOR1P1	HGNC	ENSG00000240108				54	0	0	67	13	16.25
TPX2	0	genome.wustl.edu	37	20	30345300	30345300	+	Silent	SNP	T	T	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	20	30345300	30345300	T	G	SNP	TPX2	ENST00000340513	human	ensembl	74_37	+1	known	silent	c.21	p.S7	0.959	pfam_Aurora-A-bd	pfam_TPX2_central_dom,pfam_Aurora-A-bd,pfam_TPX2_dom_C	-	no_errors	TPX2	HGNC	ENSG00000088325				79	0	0	103	20	16.2602
MYLK2	0	genome.wustl.edu	37	20	30411335	30411335	+	Silent	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	20	30411335	30411335	C	T	SNP	MYLK2	ENST00000375985	human	ensembl	74_37	+1	known	silent	c.828	p.T276	0.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MYLK2	HGNC	ENSG00000101306				103	0	0	104	38	26.7606
SAMHD1	0	genome.wustl.edu	37	20	35521337	35521337	+	Nonstop_Mutation	SNP	A	A	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	20	35521337	35521337	A	C	SNP	SAMHD1	ENST00000262878	human	ensembl	74_37	-1	known	nonstop	c.1879	p.*627G	0.009	NULL	pfam_HD_domain,pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,smart_HD/PDEase_dom,pfscan_SAM	-	no_errors	SAMHD1	HGNC	ENSG00000101347				122	0	0	111	34	23.4483
SIGLEC1	0	genome.wustl.edu	37	20	3686656	3686656	+	Silent	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	20	3686656	3686656	C	T	SNP	SIGLEC1	ENST00000344754	human	ensembl	74_37	-1	known	silent	c.441	p.P147	0.000	pfam_CD80_C2-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	SIGLEC1	HGNC	ENSG00000088827				67	0	0	59	17	22.3684
ADRA1D	0	genome.wustl.edu	37	20	4202221	4202221	+	Silent	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	20	4202221	4202221	G	A	SNP	ADRA1D	ENST00000379453	human	ensembl	74_37	-1	known	silent	c.1668	p.C556	1.000	prints_ADRA1D_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_ADRA1D_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	ADRA1D	HGNC	ENSG00000171873				26	0	0	34	20	37.037
SERINC3	0	genome.wustl.edu	37	20	43142670	43142670	+	Silent	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	20	43142670	43142670	G	A	SNP	SERINC3	ENST00000255175	human	ensembl	74_37	-1	known	silent	c.51	p.L17	0.989	pfam_TMS_TDE	pfam_TMS_TDE	-	no_errors	SERINC3	HGNC	ENSG00000132824				97	0	0	76	40	34.4828
SYS1	0	genome.wustl.edu	37	20	43995615	43995615	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	20	43995615	43995615	T	G	SNP	SYS1	ENST00000243918	human	ensembl	74_37	+1	known	missense	c.331	p.S111A	1.000	pfam_Integral_membrane_SYS1-rel,pirsf_Integral_membrane_SYS1	pfam_Integral_membrane_SYS1-rel,pirsf_Integral_membrane_SYS1	-	no_errors	SYS1	HGNC	ENSG00000204070				95	0	0	123	8	6.10687
ZSWIM3	0	genome.wustl.edu	37	20	44486535	44486535	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	20	44486535	44486535	A	C	SNP	ZSWIM3	ENST00000255152	human	ensembl	74_37	+1	known	missense	c.71	p.N24T	1.000	NULL	pfam_Znf_SWIM,pfam_MULE_transposase_dom,pfam_Transposase,smart_Znf_PMZ,pfscan_Znf_SWIM	-	no_errors	ZSWIM3	HGNC	ENSG00000132801				143	1	0.694444	164	57	25.7919
EYA2	0	genome.wustl.edu	37	20	45702826	45702826	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	20	45702826	45702826	G	T	SNP	EYA2	ENST00000327619	human	ensembl	74_37	+1	known	missense	c.513	p.Q171H	1.000	NULL	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_EYA	-	no_errors	EYA2	HGNC	ENSG00000064655				76	0	0	74	20	21.2766
PREX1	0	genome.wustl.edu	37	20	47262549	47262549	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	20	47262549	47262549	C	T	SNP	PREX1	ENST00000371941	human	ensembl	74_37	-1	known	missense	c.3352	p.A1118T	0.010	NULL	pfam_DH-domain,pfam_DEP_dom,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX1	HGNC	ENSG00000124126				42	0	0	30	12	28.5714
ARFGEF2	0	genome.wustl.edu	37	20	47589799	47589799	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	20	47589799	47589799	A	C	SNP	ARFGEF2	ENST00000371917	human	ensembl	74_37	+1	known	missense	c.1643	p.E548A	1.000	superfamily_ARM-type_fold	pfam_Sec7_dom,pfam_DUF1981_Sec7_assoc,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	-	no_errors	ARFGEF2	HGNC	ENSG00000124198				48	0	0	77	7	8.33333
PTGIS	0	genome.wustl.edu	37	20	48166644	48166644	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	20	48166644	48166644	A	G	SNP	PTGIS	ENST00000244043	human	ensembl	74_37	-1	known	missense	c.157	p.F53L	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I	-	no_errors	PTGIS	HGNC	ENSG00000124212				64	0	0	49	16	24.6154
FAM65C	0	genome.wustl.edu	37	20	49225479	49225479	+	Silent	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	20	49225479	49225479	G	A	SNP	FAM65C	ENST00000535356	human	ensembl	74_37	-1	known	silent	c.654	p.Y218	0.992	NULL	superfamily_ARM-type_fold,superfamily_Chemokine_IL8-like_dom	-	no_errors	FAM65C	HGNC	ENSG00000042062				8	0	0	10	9	47.3684
PFDN4	0	genome.wustl.edu	37	20	52830939	52830939	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	20	52830939	52830939	A	C	SNP	PFDN4	ENST00000441080	human	ensembl	74_37	+1	known	missense	c.74	p.K25T	1.000	pfam_PFD_beta-like,superfamily_Prefoldin,pirsf_PFDN4	pfam_PFD_beta-like,superfamily_Prefoldin,pirsf_PFDN4	-	no_errors	PFDN4	HGNC	ENSG00000101132				28	0	0	29	7	19.4444
CASS4	0	genome.wustl.edu	37	20	55027197	55027197	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	20	55027197	55027197	C	A	SNP	CASS4	ENST00000360314	human	ensembl	74_37	+1	known	missense	c.965	p.P322H	0.001	NULL	pfam_Serine_rich,pfam_CAS_DUF3513,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	CASS4	HGNC	ENSG00000087589				91	0	0	97	17	14.9123
STX16-NPEPL1	0	genome.wustl.edu	37	20	57243094	57243094	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	20	57243094	57243094	C	A	SNP	STX16-NPEPL1	ENST00000530122	human	ensembl	74_37	+1	known	missense	c.304	p.L102I	1.000	pfam_Syntaxin_N,superfamily_t-SNARE	pfam_T_SNARE_dom,pfam_Syntaxin_N,superfamily_t-SNARE,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX16-NPEPL1	HGNC	ENSG00000254995				100	0	0	136	28	17.0732
CHGB	0	genome.wustl.edu	37	20	5904215	5904215	+	Silent	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	20	5904215	5904215	T	C	SNP	CHGB	ENST00000378961	human	ensembl	74_37	+1	known	silent	c.1425	p.G475	0.090	pfam_Granin	pfam_Granin,prints_Chromogranin_AB	-	no_errors	CHGB	HGNC	ENSG00000089199				102	0	0	136	9	6.2069
ZBTB46	0	genome.wustl.edu	37	20	62407094	62407094	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	20	62407094	62407094	C	T	SNP	ZBTB46	ENST00000245663	human	ensembl	74_37	-1	known	missense	c.1159	p.V387M	0.999	NULL	pfam_BTB_POZ,pfam_DUF3342,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB46	HGNC	ENSG00000130584				48	0	0	47	17	26.5625
OPRL1	0	genome.wustl.edu	37	20	62730104	62730104	+	Silent	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	20	62730104	62730104	C	T	SNP	OPRL1	ENST00000336866	human	ensembl	74_37	+1	known	silent	c.1065	p.D355	0.960	prints_X_opioid_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_X_opioid_rcpt,prints_GPCR_Rhodpsn,prints_Opioid_rcpt,prints_Somatstn_rcpt,prints_Neuropept_B/W_rcpt,prints_NPY_rcpt	-	no_errors	OPRL1	HGNC	ENSG00000125510				50	0	0	43	19	30.6452
TPTE	0	genome.wustl.edu	37	21	10951287	10951287	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	21	10951287	10951287	A	C	SNP	TPTE	ENST00000361285	human	ensembl	74_37	-1	known	missense	c.425	p.L142R	0.963	pfam_Ion_trans_dom	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Ion_trans_dom,superfamily_C2_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TPTE	HGNC	ENSG00000166157				134	0	0	159	10	5.91716
ADAMTS5	0	genome.wustl.edu	37	21	28338331	28338331	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	21	28338331	28338331	C	T	SNP	ADAMTS5	ENST00000284987	human	ensembl	74_37	-1	known	missense	c.380	p.R127Q	1.000	pfam_Peptidase_M12B_N	pfam_ADAM_spacer1,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS5,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS5	HGNC	ENSG00000154736				31	0	0	23	13	36.1111
LTN1	0	genome.wustl.edu	37	21	30316746	30316746	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	21	30316746	30316746	C	T	SNP	LTN1	ENST00000389194	human	ensembl	74_37	-1	known	missense	c.4079	p.G1360D	1.000	NULL	pfam_Znf_C3HC4_RING-type,superfamily_ARM-type_fold,smart_Znf_RING-CH,pfscan_Znf_RING	-	no_errors	LTN1	HGNC	ENSG00000198862				112	0	0	101	19	15.8333
KRTAP19-5	0	genome.wustl.edu	37	21	31874258	31874258	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	21	31874258	31874258	C	T	SNP	KRTAP19-5	ENST00000334151	human	ensembl	74_37	-1	known	missense	c.151	p.G51R	0.129	pfam_KRTAP_type6/8/16/19/20	pfam_KRTAP_type6/8/16/19/20	-	no_errors	KRTAP19-5	HGNC	ENSG00000186977				155	0	0	71	50	41.3223
DOPEY2	0	genome.wustl.edu	37	21	37605234	37605234	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	21	37605234	37605234	C	T	SNP	DOPEY2	ENST00000399151	human	ensembl	74_37	+1	known	missense	c.2483	p.A828V	0.998	NULL	pfam_Dopey_N	-	no_errors	DOPEY2	HGNC	ENSG00000142197				116	0	0	63	44	41.1215
MORC3	0	genome.wustl.edu	37	21	37710204	37710204	+	Silent	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	21	37710204	37710204	G	A	SNP	MORC3	ENST00000400485	human	ensembl	74_37	+1	known	silent	c.420	p.A140	0.980	superfamily_HATPase_ATP-bd	pfam_Znf_CW,pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,pfscan_Znf_CW	-	no_errors	MORC3	HGNC	ENSG00000159256				95	0	0	65	48	42.4779
ADARB1	0	genome.wustl.edu	37	21	46595860	46595860	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	21	46595860	46595860	G	A	SNP	ADARB1	ENST00000360697	human	ensembl	74_37	+1	known	missense	c.244	p.A82T	1.000	pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,pfscan_dsRNA-bd_dom	pfam_A_deamin,pfam_dsRNA-bd_dom,superfamily_Cytokine_IL1-like,smart_dsRNA-bd_dom,smart_A_deamin,pfscan_dsRNA-bd_dom,pfscan_A_deamin	-	no_errors	ADARB1	HGNC	ENSG00000197381				146	0	0	97	48	33.1034
CDC45	0	genome.wustl.edu	37	22	19495010	19495010	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	22	19495010	19495010	A	G	SNP	CDC45	ENST00000437685	human	ensembl	74_37	+1	known	missense	c.1022	p.K341R	1.000	pfam_CDC45	pfam_CDC45	-	no_errors	CDC45	HGNC	ENSG00000093009				55	0	0	55	36	39.5604
COMT	0	genome.wustl.edu	37	22	19951793	19951793	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	22	19951793	19951793	C	T	SNP	COMT	ENST00000361682	human	ensembl	74_37	+1	known	missense	c.586	p.R196W	0.899	pfam_O-MeTrfase_3,pirsf_Catechol_O-MeTrfase_euk	pfam_O-MeTrfase_3,pirsf_Catechol_O-MeTrfase_euk	-	no_errors	COMT	HGNC	ENSG00000093010				54	0	0	36	25	40.9836
TRMT2A	0	genome.wustl.edu	37	22	20103762	20103762	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	22	20103762	20103762	A	G	SNP	TRMT2A	ENST00000252136	human	ensembl	74_37	-1	known	missense	c.398	p.L133P	0.978	pfscan_RRM_dom	pfam_U5_MeTrfase,pfam_PCMT,pfam_Small_mtfrase_dom,pfam_RNA_methylase_dom,pfam_RNA_MeTrfase_RsmD,pfam_Methyltransf_11,pfam_tRNA_(Gua-N-7)_MeTrfase,pfam_UbiE/COQ5_MeTrFase,pfscan_RRM_dom	-	no_errors	TRMT2A	HGNC	ENSG00000099899				37	0	0	18	16	47.0588
HIC2	0	genome.wustl.edu	37	22	21800714	21800714	+	Silent	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	22	21800714	21800714	C	T	SNP	HIC2	ENST00000407464	human	ensembl	74_37	+1	known	silent	c.1530	p.C510	0.987	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	HIC2	HGNC	ENSG00000169635				42	0	0	20	25	55.5556
HSCB	0	genome.wustl.edu	37	22	29141880	29141880	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	22	29141880	29141880	A	G	SNP	HSCB	ENST00000216027	human	ensembl	74_37	+1	known	missense	c.452	p.E151G	0.998	superfamily_HscB_oligo_C,tigrfam_HscB	pfam_HscB_oligo_C,pfam_DnaJ_domain,superfamily_DnaJ_domain,superfamily_HscB_oligo_C,tigrfam_HscB	-	no_errors	HSCB	HGNC	ENSG00000100209				99	0	0	53	35	39.7727
NEFH	0	genome.wustl.edu	37	22	29885456	29885456	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	22	29885456	29885456	G	T	SNP	NEFH	ENST00000310624	human	ensembl	74_37	+1	known	missense	c.1827	p.K609N	0.995	pfam_DUF1388	pfam_IF,pfam_DUF1388	-	no_errors	NEFH	HGNC	ENSG00000100285				177	0	0	96	57	37.2549
CABP7	0	genome.wustl.edu	37	22	30125551	30125551	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	22	30125551	30125551	T	C	SNP	CABP7	ENST00000216144	human	ensembl	74_37	+1	known	missense	c.641	p.M214T	1.000	NULL	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	CABP7	HGNC	ENSG00000100314				44	0	0	33	16	32.6531
TBC1D10A	0	genome.wustl.edu	37	22	30695501	30695501	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	22	30695501	30695501	G	A	SNP	TBC1D10A	ENST00000215790	human	ensembl	74_37	-1	known	missense	c.349	p.R117W	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D10A	HGNC	ENSG00000099992				47	0	0	29	24	45.283
MCM5	0	genome.wustl.edu	37	22	35812348	35812348	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	22	35812348	35812348	G	A	SNP	MCM5	ENST00000216122	human	ensembl	74_37	+1	known	missense	c.1364	p.R455H	1.000	pfam_MCM_DNA-dep_ATPase,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,superfamily_NA-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM5,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM5	HGNC	ENSG00000100297				115	0	0	62	40	39.2157
FOXRED2	0	genome.wustl.edu	37	22	36902271	36902271	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	22	36902271	36902271	T	C	SNP	FOXRED2	ENST00000216187	human	ensembl	74_37	-1	known	missense	c.199	p.S67G	1.000	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD	-	no_errors	FOXRED2	HGNC	ENSG00000100350				31	0	0	16	7	30.4348
GRAP2	0	genome.wustl.edu	37	22	40366977	40366977	+	Silent	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	22	40366977	40366977	C	T	SNP	GRAP2	ENST00000344138	human	ensembl	74_37	+1	known	silent	c.882	p.S294	0.005	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	pfam_SH3_domain,pfam_SH2,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,pfscan_SH2,pfscan_SH3_domain,prints_SH2,prints_SH3_domain	-	no_errors	GRAP2	HGNC	ENSG00000100351				35	0	0	23	21	47.7273
TOB2	0	genome.wustl.edu	37	22	41832689	41832689	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	22	41832689	41832689	G	A	SNP	TOB2	ENST00000327492	human	ensembl	74_37	-1	known	missense	c.661	p.R221C	0.998	NULL	pfam_Anti_prolifrtn,pfam_Ataxin-2_C,smart_Anti_prolifrtn,prints_Anti_prolifrtn	-	no_errors	TOB2	HGNC	ENSG00000183864				21	0	0	8	12	60
PMM1	0	genome.wustl.edu	37	22	41973879	41973879	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	22	41973879	41973879	T	C	SNP	PMM1	ENST00000216259	human	ensembl	74_37	-1	known	missense	c.599	p.Y200C	1.000	pfam_PMM,pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_HAD-SF_hydro_IIB	pfam_PMM,pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_HAD-SF_hydro_IIB	-	no_errors	PMM1	HGNC	ENSG00000100417				60	0	0	31	25	44.6429
SERHL	0	genome.wustl.edu	37	22	42896655	42896655	+	RNA	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	22	42896655	42896655	G	A	SNP	SERHL	ENST00000359906	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	SERHL	HGNC	ENSG00000172250				23	0	0	22	9	29.0323
PNPLA5	0	genome.wustl.edu	37	22	44277498	44277498	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	22	44277498	44277498	A	G	SNP	PNPLA5	ENST00000216177	human	ensembl	74_37	-1	known	missense	c.1139	p.L380P	0.008	NULL	pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase	-	no_errors	PNPLA5	HGNC	ENSG00000100341				21	0	0	14	9	39.1304
ARHGAP8	0	genome.wustl.edu	37	22	45182488	45182488	+	Splice_Site	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	22	45182488	45182488	T	C	SNP	ARHGAP8	ENST00000517296	human	ensembl	74_37	+1	known	splice_site	c.841+2	e8+2	0.838	-	-	-	no_errors	ARHGAP8	HGNC	ENSG00000241484				24	0	0	15	5	25
SENP7	0	genome.wustl.edu	37	3	101136515	101136515	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	3	101136515	101136515	A	G	SNP	SENP7	ENST00000394095	human	ensembl	74_37	-1	known	missense	c.404	p.L135S	1.000	NULL	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP7	HGNC	ENSG00000138468				150	0	0	114	19	14.2857
ATP2B2	0	genome.wustl.edu	37	3	10370646	10370646	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	3	10370646	10370646	G	A	SNP	ATP2B2	ENST00000352432	human	ensembl	74_37	-1	known	missense	c.3584	p.A1195V	1.000	NULL	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B2	HGNC	ENSG00000157087				66	0	0	44	29	39.726
DRD3	0	genome.wustl.edu	37	3	113847734	113847734	+	Silent	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	3	113847734	113847734	G	A	SNP	DRD3	ENST00000383673	human	ensembl	74_37	-1	known	silent	c.1032	p.P344	0.428	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Dopamine_D3_rcpt,prints_GPCR_Rhodpsn,prints_Dopamine_rcpt	-	no_errors	DRD3	HGNC	ENSG00000151577				190	0	0	90	65	41.9355
KLF15	0	genome.wustl.edu	37	3	126070902	126070902	+	Silent	SNP	G	G	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	3	126070902	126070902	G	T	SNP	KLF15	ENST00000296233	human	ensembl	74_37	-1	known	silent	c.864	p.A288	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF15	HGNC	ENSG00000163884				8	0	0	5	4	44.4444
MKRN2	0	genome.wustl.edu	37	3	12611711	12611711	+	Silent	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	3	12611711	12611711	C	T	SNP	MKRN2	ENST00000170447	human	ensembl	74_37	+1	known	silent	c.297	p.P99	0.969	NULL	pfam_Znf_CCCH,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	MKRN2	HGNC	ENSG00000075975				36	0	0	40	3	6.97674
PLXNA1	0	genome.wustl.edu	37	3	126710241	126710241	+	Silent	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	3	126710241	126710241	T	C	SNP	PLXNA1	ENST00000393409	human	ensembl	74_37	+1	known	silent	c.1209	p.D403	0.974	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA1	HGNC	ENSG00000114554				36	0	0	15	9	37.5
NMNAT3	0	genome.wustl.edu	37	3	139280118	139280118	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	3	139280118	139280118	C	T	SNP	NMNAT3	ENST00000296202	human	ensembl	74_37	-1	known	missense	c.493	p.V165M	1.000	pfam_Cyt_trans-like,tigrfam_NAMN_adtrnsfrase	pfam_Cyt_trans-like,tigrfam_NAMN_adtrnsfrase	-	no_errors	NMNAT3	HGNC	ENSG00000163864				45	0	0	20	14	41.1765
HPS3	0	genome.wustl.edu	37	3	148872996	148872996	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	3	148872996	148872996	A	C	SNP	HPS3	ENST00000296051	human	ensembl	74_37	+1	known	missense	c.1503	p.K501N	1.000	pirsf_HPS3	pirsf_HPS3	-	no_errors	HPS3	HGNC	ENSG00000163755				56	0	0	36	20	35.7143
KCNAB1	0	genome.wustl.edu	37	3	155838663	155838663	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	3	155838663	155838663	G	A	SNP	KCNAB1	ENST00000490337	human	ensembl	74_37	+1	known	missense	c.263	p.G88D	1.000	superfamily_NADP_OxRdtase_dom	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_K_chnl_volt-dep_bsu_KCNAB-rel,prints_K_chnl_volt-dep_bsu_KCNAB1,prints_K_chnl_volt-dep_bsu_KCNAB3,tigrfam_K_chnl_volt-dep_bsu_KCNAB	-	no_errors	KCNAB1	HGNC	ENSG00000169282				36	0	0	33	3	8.33333
SLC7A14	0	genome.wustl.edu	37	3	170244644	170244644	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	3	170244644	170244644	G	A	SNP	SLC7A14	ENST00000231706	human	ensembl	74_37	-1	known	missense	c.82	p.R28C	1.000	NULL	pfam_AA-permease/SLC12A_dom	-	no_errors	SLC7A14	HGNC	ENSG00000013293				23	0	0	23	16	41.0256
CCDC39	0	genome.wustl.edu	37	3	180365986	180365986	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	3	180365986	180365986	T	G	SNP	CCDC39	ENST00000442201	human	ensembl	74_37	-1	known	missense	c.1329	p.E443D	1.000	NULL	superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	CCDC39	HGNC	ENSG00000145075				39	0	0	25	12	32.4324
MCCC1	0	genome.wustl.edu	37	3	182790190	182790190	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	3	182790190	182790190	G	T	SNP	MCCC1	ENST00000265594	human	ensembl	74_37	-1	known	missense	c.455	p.P152H	1.000	pfam_CarbamoylP_synth_lsu_N,superfamily_PreATP-grasp_dom,pfscan_Biotin_carboxylation_dom	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_carboxylate-amine,pfam_ATP-grasp_RimK-type,pfam_ATP-grasp_DUF201-type,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_Biotin_lipoyl	-	no_errors	MCCC1	HGNC	ENSG00000078070				48	0	0	32	29	47.541
ALG3	0	genome.wustl.edu	37	3	183963113	183963113	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	3	183963113	183963113	C	T	SNP	ALG3	ENST00000397676	human	ensembl	74_37	-1	known	missense	c.478	p.A160T	1.000	pfam_Glycosyltransferase_ALG3	pfam_Glycosyltransferase_ALG3	-	no_errors	ALG3	HGNC	ENSG00000214160				37	0	0	23	6	20.6897
EIF4G1	0	genome.wustl.edu	37	3	184045694	184045694	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	3	184045694	184045694	C	T	SNP	EIF4G1	ENST00000352767	human	ensembl	74_37	+1	known	missense	c.3878	p.T1293M	1.000	pfam_Initiation_fac_eIF4g_MI,superfamily_ARM-type_fold,smart_Initiation_fac_eIF4g_MI	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,pfam_W2_domain,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI,smart_W2_domain	-	no_errors	EIF4G1	HGNC	ENSG00000114867				69	0	0	28	18	39.1304
ATP13A3	0	genome.wustl.edu	37	3	194147839	194147839	+	Silent	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	3	194147839	194147839	C	T	SNP	ATP13A3	ENST00000256031	human	ensembl	74_37	-1	known	silent	c.3090	p.Q1030	0.993	tigrfam_ATPase_P-typ_Cation_typ_V	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_Cation_typ_V,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP13A3	HGNC	ENSG00000133657				56	0	0	39	15	27.7778
MUC4	0	genome.wustl.edu	37	3	195510030	195510030	+	Silent	SNP	C	C	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	3	195510030	195510030	C	G	SNP	MUC4	ENST00000463781	human	ensembl	74_37	-1	known	silent	c.8421	p.S2807	0.690	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EG-like_dom,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113				47	0	0	33	5	13.1579
MFI2	0	genome.wustl.edu	37	3	196736658	196736658	+	Silent	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	3	196736658	196736658	G	A	SNP	MFI2	ENST00000296350	human	ensembl	74_37	-1	known	silent	c.1356	p.Y452	1.000	pfam_Transferrin_fam,smart_Transferrin_fam,pirsf_Transferrin	pfam_Transferrin_fam,smart_Transferrin_fam,pirsf_Transferrin,prints_Transferrin_fam	-	no_errors	MFI2	HGNC	ENSG00000163975				49	0	0	37	26	41.2698
CNTN4	0	genome.wustl.edu	37	3	3095601	3095601	+	Silent	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	3	3095601	3095601	A	G	SNP	CNTN4	ENST00000397461	human	ensembl	74_37	+1	known	silent	c.2922	p.P974	0.977	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN4	HGNC	ENSG00000144619				66	0	0	45	29	39.1892
GPD1L	0	genome.wustl.edu	37	3	32181769	32181769	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	3	32181769	32181769	G	A	SNP	GPD1L	ENST00000282541	human	ensembl	74_37	+1	known	missense	c.416	p.R139H	0.984	pfam_G3P_DH_NAD-dep_N,pirsf_G3P_DH_NAD-dep,tigrfam_G3P_DH_NAD-dep_euk	pfam_G3P_DH_NAD-dep_C,pfam_G3P_DH_NAD-dep_N,superfamily_6-PGluconate_DH_C-like,pirsf_G3P_DH_NAD-dep,prints_G3P_DH_NAD-dep,tigrfam_G3P_DH_NAD-dep_euk	-	no_errors	GPD1L	HGNC	ENSG00000152642				134	0	0	70	56	44.4444
CHL1	0	genome.wustl.edu	37	3	419520	419520	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	3	419520	419520	A	G	SNP	CHL1	ENST00000256509	human	ensembl	74_37	+1	known	missense	c.1771	p.N591D	0.680	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CHL1	HGNC	ENSG00000134121				78	0	0	62	28	31.1111
CCR2	0	genome.wustl.edu	37	3	46399019	46399019	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	3	46399019	46399019	A	G	SNP	CCR2	ENST00000292301	human	ensembl	74_37	+1	known	missense	c.1	p.M1V	0.015	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Chemokine_CCR2	-	no_errors	CCR2	HGNC	ENSG00000121807				105	0	0	109	17	13.4921
P4HTM	0	genome.wustl.edu	37	3	49040002	49040002	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	3	49040002	49040002	G	A	SNP	P4HTM	ENST00000343546	human	ensembl	74_37	+1	known	missense	c.697	p.A233T	0.995	smart_Pro_4_hyd_alph	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	P4HTM	HGNC	ENSG00000178467				145	0	0	82	41	33.3333
AMIGO3	0	genome.wustl.edu	37	3	49755859	49755859	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	3	49755859	49755859	G	A	SNP	AMIGO3	ENST00000320431	human	ensembl	74_37	-1	known	missense	c.1040	p.A347V	0.184	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	AMIGO3	HGNC	ENSG00000176020				17	0	0	16	5	23.8095
TLR9	0	genome.wustl.edu	37	3	52255367	52255367	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	3	52255367	52255367	G	A	SNP	TLR9	ENST00000597542	human	ensembl	74_37	-1	known	missense	c.3037	p.R1013C	1.000	pfam_TIR_dom,superfamily_TIR_dom,smart_TIR_dom,pfscan_TIR_dom	pfam_Leu-rich_rpt,pfam_TIR_dom,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR9	HGNC	ENSG00000239732				31	0	0	21	16	43.2432
GLYCTK	0	genome.wustl.edu	37	3	52325846	52325846	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	3	52325846	52325846	C	T	SNP	GLYCTK	ENST00000436784	human	ensembl	74_37	+1	known	missense	c.613	p.R205C	0.181	NULL	pfam_MOFRL	-	no_errors	GLYCTK	HGNC	ENSG00000168237				52	0	0	29	23	44.2308
NISCH	0	genome.wustl.edu	37	3	52525384	52525384	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	3	52525384	52525384	G	T	SNP	NISCH	ENST00000345716	human	ensembl	74_37	+1	known	missense	c.3759	p.Q1253H	1.000	NULL	pfam_Phox,pfam_Leu-rich_rpt,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	NISCH	HGNC	ENSG00000010322				42	0	0	21	15	41.6667
WNT5A	0	genome.wustl.edu	37	3	55508438	55508438	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	3	55508438	55508438	C	T	SNP	WNT5A	ENST00000264634	human	ensembl	74_37	-1	known	missense	c.611	p.R204H	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt	-	no_errors	WNT5A	HGNC	ENSG00000114251				10	0	0	7	5	41.6667
ACOX2	0	genome.wustl.edu	37	3	58516335	58516335	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	3	58516335	58516335	C	T	SNP	ACOX2	ENST00000302819	human	ensembl	74_37	-1	known	missense	c.850	p.G284S	0.743	pirsf_Acyl-CoA_oxidase	pfam_Acyl-CoA_oxidase_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,superfamily_AcylCo_DH/oxidase_C,superfamily_AcylCoA_DH/oxidase_NM_dom,pirsf_Acyl-CoA_oxidase	-	no_errors	ACOX2	HGNC	ENSG00000168306				45	0	0	25	6	19.3548
PTPRG	0	genome.wustl.edu	37	3	62204651	62204651	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	3	62204651	62204651	A	G	SNP	PTPRG	ENST00000474889	human	ensembl	74_37	+1	known	missense	c.2282	p.Y761C	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRG	HGNC	ENSG00000144724				135	0	0	80	51	38.9313
SYNPR	0	genome.wustl.edu	37	3	63542315	63542315	+	Silent	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	3	63542315	63542315	C	T	SNP	SYNPR	ENST00000478300	human	ensembl	74_37	+1	known	silent	c.306	p.F102	0.943	pfam_Marvel,prints_Synaptophysin/porin	pfam_Marvel,prints_Synaptophysin/porin	-	no_errors	SYNPR	HGNC	ENSG00000163630				40	0	0	24	16	40
ATXN7	0	genome.wustl.edu	37	3	63981263	63981263	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	3	63981263	63981263	T	C	SNP	ATXN7	ENST00000398590	human	ensembl	74_37	+1	known	missense	c.1765	p.C589R	0.009	NULL	pfam_SCA7_dom	-	no_errors	ATXN7	HGNC	ENSG00000163635				85	0	0	57	35	38.0435
FOXP1	0	genome.wustl.edu	37	3	71027093	71027093	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	3	71027093	71027093	C	T	SNP	FOXP1	ENST00000318789	human	ensembl	74_37	-1	known	missense	c.1234	p.A412T	0.991	NULL	pfam_TF_fork_head,smart_TF_fork_head,prints_TF_fork_head,pfscan_TF_fork_head	-	no_errors	FOXP1	HGNC	ENSG00000114861				103	1	0.961538	67	34	33.6634
FOXP1	0	genome.wustl.edu	37	3	71247410	71247410	+	Silent	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	3	71247410	71247410	C	T	SNP	FOXP1	ENST00000318789	human	ensembl	74_37	-1	known	silent	c.123	p.T41	0.119	NULL	pfam_TF_fork_head,smart_TF_fork_head,prints_TF_fork_head,pfscan_TF_fork_head	-	no_errors	FOXP1	HGNC	ENSG00000114861				55	0	0	30	34	53.125
NSUN3	0	genome.wustl.edu	37	3	93803180	93803180	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	3	93803180	93803180	G	C	SNP	NSUN3	ENST00000314622	human	ensembl	74_37	+1	known	missense	c.352	p.A118P	1.000	pfam_Fmu/NOL1/Nop2p	pfam_Fmu/NOL1/Nop2p,prints_RCMT	-	no_errors	NSUN3	HGNC	ENSG00000178694				76	0	0	57	25	30.4878
IL17RE	0	genome.wustl.edu	37	3	9944618	9944618	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	3	9944618	9944618	T	C	SNP	IL17RE	ENST00000421412	human	ensembl	74_37	+1	known	missense	c.101	p.M34T	1.000	NULL	pfam_SEFIR	-	no_errors	IL17RE	HGNC	ENSG00000163701				45	0	0	39	24	38.0952
NPNT	0	genome.wustl.edu	37	4	106819158	106819158	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	4	106819158	106819158	C	T	SNP	NPNT	ENST00000379987	human	ensembl	74_37	+1	known	missense	c.172	p.P58S	1.000	NULL	pfam_MAM_dom,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_TIL_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_MAM_dom,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	NPNT	HGNC	ENSG00000168743				25	0	0	28	11	28.2051
PAPSS1	0	genome.wustl.edu	37	4	108603286	108603286	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	4	108603286	108603286	A	G	SNP	PAPSS1	ENST00000265174	human	ensembl	74_37	-1	known	missense	c.554	p.F185S	1.000	pfam_APS_kinase,superfamily_P-loop_NTPase,tigrfam_APS_kinase	pfam_Sulfurylase_cat_dom,pfam_APS_kinase,superfamily_PUA-like_domain,superfamily_P-loop_NTPase,tigrfam_Sulphate_adenylyltransferase,tigrfam_APS_kinase	-	no_errors	PAPSS1	HGNC	ENSG00000138801				87	0	0	46	35	43.2099
BBS7	0	genome.wustl.edu	37	4	122756413	122756413	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	4	122756413	122756413	C	T	SNP	BBS7	ENST00000264499	human	ensembl	74_37	-1	known	missense	c.1397	p.G466D	1.000	pirsf_Bardet-Biedl_syndrome_7_prot	superfamily_WD40_repeat_dom,pirsf_Bardet-Biedl_syndrome_7_prot	-	no_errors	BBS7	HGNC	ENSG00000138686				72	0	0	39	29	42.6471
FAT4	0	genome.wustl.edu	37	4	126239199	126239199	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	4	126239199	126239199	G	A	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	missense	c.1633	p.A545T	0.991	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				37	0	0	40	4	9.09091
FAT4	0	genome.wustl.edu	37	4	126370559	126370559	+	Silent	SNP	T	T	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	4	126370559	126370559	T	G	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	silent	c.8388	p.T2796	0.876	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				136	0	0	81	48	37.2093
FAT4	0	genome.wustl.edu	37	4	126411350	126411350	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	4	126411350	126411350	C	A	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	missense	c.13373	p.T4458K	0.998	smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				72	0	0	34	22	39.2857
RAB28	0	genome.wustl.edu	37	4	13371528	13371528	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	4	13371528	13371528	G	A	SNP	RAB28	ENST00000288723	human	ensembl	74_37	-1	known	missense	c.635	p.T212I	0.908	NULL	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB28	HGNC	ENSG00000157869				87	0	0	57	23	28.75
INPP4B	0	genome.wustl.edu	37	4	143003205	143003205	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	4	143003205	143003205	C	A	SNP	INPP4B	ENST00000509777	human	ensembl	74_37	-1	known	missense	c.2621	p.R874L	1.000	NULL	superfamily_C2_dom	-	no_errors	INPP4B	HGNC	ENSG00000109452				65	0	0	33	20	37.7358
LRBA	0	genome.wustl.edu	37	4	151773180	151773180	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	4	151773180	151773180	A	G	SNP	LRBA	ENST00000357115	human	ensembl	74_37	-1	known	missense	c.3682	p.C1228R	0.000	NULL	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl_sf,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom	-	no_errors	LRBA	HGNC	ENSG00000198589				86	0	0	54	35	39.3258
KIAA0922	0	genome.wustl.edu	37	4	154519772	154519772	+	Silent	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	4	154519772	154519772	C	T	SNP	KIAA0922	ENST00000409959	human	ensembl	74_37	+1	known	silent	c.2154	p.G718	0.000	NULL	pfam_DUF3651_TMEM131	-	no_errors	KIAA0922	HGNC	ENSG00000121210				73	0	0	47	28	37.3333
GUCY1A3	0	genome.wustl.edu	37	4	156631766	156631766	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	4	156631766	156631766	A	G	SNP	GUCY1A3	ENST00000296518	human	ensembl	74_37	+1	known	missense	c.449	p.N150S	1.000	pfam_Heme_NO-bd,superfamily_NO_sig/Golgi_transp_ligand-bd	pfam_A/G_cyclase,pfam_Haem_no_assoc-bd,pfam_Heme_NO-bd,superfamily_A/G_cyclase,superfamily_NO_sig/Golgi_transp_ligand-bd,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	GUCY1A3	HGNC	ENSG00000164116				71	0	0	48	21	30.4348
CTSO	0	genome.wustl.edu	37	4	156849508	156849508	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	4	156849508	156849508	T	G	SNP	CTSO	ENST00000433477	human	ensembl	74_37	-1	known	missense	c.911	p.K304T	1.000	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSO	HGNC	ENSG00000256043				69	0	0	76	4	5
TMEM129	0	genome.wustl.edu	37	4	1720065	1720065	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	4	1720065	1720065	A	G	SNP	TMEM129	ENST00000382936	human	ensembl	74_37	-1	known	missense	c.494	p.I165T	1.000	pfam_Tmpp129	pfam_Tmpp129	-	no_errors	TMEM129	HGNC	ENSG00000168936				31	0	0	19	9	32.1429
LETM1	0	genome.wustl.edu	37	4	1817414	1817414	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	4	1817414	1817414	C	T	SNP	LETM1	ENST00000302787	human	ensembl	74_37	-1	known	missense	c.2047	p.V683I	0.998	pfscan_EF_hand_dom	pfam_LETM1,pfscan_EF_hand_dom	-	no_errors	LETM1	HGNC	ENSG00000168924				52	0	0	37	16	30.1887
ENPP6	0	genome.wustl.edu	37	4	185038092	185038092	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	4	185038092	185038092	A	G	SNP	ENPP6	ENST00000296741	human	ensembl	74_37	-1	known	missense	c.772	p.Y258H	0.858	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	ENPP6	HGNC	ENSG00000164303				48	0	0	37	4	9.7561
TRIML2	0	genome.wustl.edu	37	4	189013038	189013038	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	4	189013038	189013038	A	C	SNP	TRIML2	ENST00000512729	human	ensembl	74_37	-1	known	missense	c.653	p.L218R	0.995	superfamily_ConA-like_lec_gl_sf,smart_PRY,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	-	no_errors	TRIML2	HGNC	ENSG00000179046				93	0	0	48	23	32.3944
PPARGC1A	0	genome.wustl.edu	37	4	23814436	23814436	+	Silent	SNP	G	G	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	4	23814436	23814436	G	C	SNP	PPARGC1A	ENST00000264867	human	ensembl	74_37	-1	known	silent	c.1953	p.R651	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PPARGC1A	HGNC	ENSG00000109819				141	0	0	82	52	38.806
FAM193A	0	genome.wustl.edu	37	4	2701621	2701621	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	4	2701621	2701621	T	C	SNP	FAM193A	ENST00000324666	human	ensembl	74_37	+1	known	missense	c.2849	p.M950T	1.000	NULL	NULL	-	no_errors	FAM193A	HGNC	ENSG00000125386				180	0	0	136	10	6.84932
HTT	0	genome.wustl.edu	37	4	3158802	3158802	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	4	3158802	3158802	C	A	SNP	HTT	ENST00000355072	human	ensembl	74_37	+1	known	missense	c.3629	p.S1210Y	1.000	NULL	pfam_Huntingtin_middle-repeat,pfam_HEAT,superfamily_ARM-type_fold,prints_Huntingtin	-	no_errors	HTT	HGNC	ENSG00000197386				78	0	0	43	20	31.746
ARAP2	0	genome.wustl.edu	37	4	36115863	36115863	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	4	36115863	36115863	G	A	SNP	ARAP2	ENST00000303965	human	ensembl	74_37	-1	known	missense	c.4085	p.A1362V	1.000	pfam_Ras-assoc,pfscan_Ras-assoc	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_ArfGAP,pfam_SAM_type1,pfam_SAM_2,pfam_Ras-assoc,superfamily_Rho_GTPase_activation_prot,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP2	HGNC	ENSG00000047365				84	0	0	61	28	31.4607
ABCA11P	0	genome.wustl.edu	37	4	419744	419744	+	RNA	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	4	419744	419744	G	A	SNP	ABCA11P	ENST00000451020	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.202	-	-	-	no_errors	ABCA11P	HGNC	ENSG00000251595				47	0	0	36	24	40
CORIN	0	genome.wustl.edu	37	4	47746539	47746539	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	4	47746539	47746539	G	T	SNP	CORIN	ENST00000273857	human	ensembl	74_37	-1	known	missense	c.679	p.L227M	1.000	pirsf_Peptidase_S1A_corin,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom	pirsf_Peptidase_S1A_corin,pfam_Peptidase_S1,pfam_LDrepeatLR_classA_rpt,pfam_Frizzled_dom,superfamily_Trypsin-like_Pept_dom,superfamily_Frizzled_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_Srcr_rcpt-rel,smart_Frizzled_dom,smart_LDrepeatLR_classA_rpt,smart_Srcr_rcpt-rel,smart_Peptidase_S1,prints_LDrepeatLR_classA_rpt,prints_Peptidase_S1A,pfscan_Frizzled_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1	-	no_errors	CORIN	HGNC	ENSG00000145244				221	0	0	134	94	41.2281
KIAA1211	0	genome.wustl.edu	37	4	57181919	57181919	+	Silent	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	4	57181919	57181919	C	T	SNP	KIAA1211	ENST00000504228	human	ensembl	74_37	+1	known	silent	c.2251	p.L751	0.000	NULL	NULL	-	no_errors	KIAA1211	HGNC	ENSG00000109265				52	0	0	41	29	41.4286
TMPRSS11F	0	genome.wustl.edu	37	4	68925166	68925166	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	4	68925166	68925166	G	A	SNP	TMPRSS11F	ENST00000356291	human	ensembl	74_37	-1	known	missense	c.1036	p.R346W	1.000	pirsf_Pept_S1A_HAT/DESC1,pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pirsf_Pept_S1A_HAT/DESC1,pfam_Peptidase_S1,pfam_SEA_dom,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_SEA_dom,pfscan_Peptidase_S1	-	no_errors	TMPRSS11F	HGNC	ENSG00000198092				45	0	0	25	21	45.6522
TADA2B	0	genome.wustl.edu	37	4	7056720	7056720	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	4	7056720	7056720	T	C	SNP	TADA2B	ENST00000310074	human	ensembl	74_37	+1	known	missense	c.1202	p.L401P	0.996	superfamily_Homeodomain-like,pirsf_Transcriptional_adaptor_2	pfam_SANT/Myb,pfam_Znf_ZZ,superfamily_Homeodomain-like,smart_Znf_ZZ,smart_SANT/Myb,pirsf_Transcriptional_adaptor_2,pfscan_Znf_ZZ,pfscan_Myb-like_dom	-	no_errors	TADA2B	HGNC	ENSG00000173011				64	0	0	36	22	37.931
GC	0	genome.wustl.edu	37	4	72649747	72649747	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	4	72649747	72649747	A	C	SNP	GC	ENST00000504199	human	ensembl	74_37	-1	putative	missense	c.46	p.S16A	0.000	NULL	pfam_Serum_albumin_N,pfam_VitD-bind_III,superfamily_Serum_albumin-like,smart_Serum_albumin_N,prints_VitD-bd,prints_ALB/AFP/VDB	-	no_errors	GC	HGNC	ENSG00000145321				49	0	0	33	20	37.7358
AFM	0	genome.wustl.edu	37	4	74364932	74364932	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	4	74364932	74364932	T	C	SNP	AFM	ENST00000226355	human	ensembl	74_37	+1	known	missense	c.1391	p.L464P	0.006	pirsf_Serum_albumin/AFP,pfam_Serum_albumin_N,superfamily_Serum_albumin-like,smart_Serum_albumin_N	pirsf_Serum_albumin/AFP,pfam_Serum_albumin_N,superfamily_Serum_albumin-like,smart_Serum_albumin_N,prints_ALB/AFP/VDB,prints_Alpha-fetoprotein	-	no_errors	AFM	HGNC	ENSG00000079557				63	0	0	36	14	28
EREG	0	genome.wustl.edu	37	4	75246852	75246852	+	Silent	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	4	75246852	75246852	C	T	SNP	EREG	ENST00000244869	human	ensembl	74_37	+1	known	silent	c.276	p.C92	1.000	pfscan_EG-like_dom	pfscan_EG-like_dom	-	no_errors	EREG	HGNC	ENSG00000124882				84	0	0	56	35	38.4615
HELQ	0	genome.wustl.edu	37	4	84374977	84374977	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	4	84374977	84374977	G	A	SNP	HELQ	ENST00000295488	human	ensembl	74_37	-1	known	missense	c.419	p.A140V	0.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_DNA_repair_Rad51/TF_NusA_a-hlx,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	HELQ	HGNC	ENSG00000163312				229	0	0	123	69	35.9375
CTNND2	0	genome.wustl.edu	37	5	11346569	11346569	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	5	11346569	11346569	G	A	SNP	CTNND2	ENST00000304623	human	ensembl	74_37	-1	known	missense	c.1543	p.P515S	1.000	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND2	HGNC	ENSG00000169862				65	0	0	46	21	31.3433
GDF9	0	genome.wustl.edu	37	5	132197386	132197386	+	Silent	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	5	132197386	132197386	T	C	SNP	GDF9	ENST00000296875	human	ensembl	74_37	-1	known	silent	c.1260	p.V420	0.005	pfam_TGF-b_C,smart_TGF-b_C	pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	GDF9	HGNC	ENSG00000164404				93	0	0	53	32	37.6471
KIF20A	0	genome.wustl.edu	37	5	137518981	137518981	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	5	137518981	137518981	C	T	SNP	KIF20A	ENST00000394894	human	ensembl	74_37	+1	known	missense	c.956	p.P319L	0.363	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF20A	HGNC	ENSG00000112984				55	0	0	45	18	28.5714
DNAH5	0	genome.wustl.edu	37	5	13766090	13766090	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	5	13766090	13766090	A	C	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	missense	c.10096	p.L3366V	0.110	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				124	0	0	121	8	6.20155
PCDHA3	0	genome.wustl.edu	37	5	140181171	140181171	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	5	140181171	140181171	C	T	SNP	PCDHA3	ENST00000522353	human	ensembl	74_37	+1	known	missense	c.389	p.A130V	0.045	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA3	HGNC	ENSG00000255408				137	0	0	82	38	31.6667
PCDHB8	0	genome.wustl.edu	37	5	140559946	140559946	+	Silent	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	5	140559946	140559946	C	T	SNP	PCDHB8	ENST00000239444	human	ensembl	74_37	+1	known	silent	c.2331	p.G777	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB8	HGNC	ENSG00000120322				73	0	0	48	19	28.3582
PCDHB11	0	genome.wustl.edu	37	5	140581381	140581381	+	Silent	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	5	140581381	140581381	G	A	SNP	PCDHB11	ENST00000354757	human	ensembl	74_37	+1	known	silent	c.2034	p.P678	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHB11	HGNC	ENSG00000197479				83	0	0	50	29	36.7089
PCDHGA2	0	genome.wustl.edu	37	5	140719048	140719048	+	Silent	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	5	140719048	140719048	C	T	SNP	PCDHGA2	ENST00000394576	human	ensembl	74_37	+1	known	silent	c.510	p.Y170	0.002	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA2	HGNC	ENSG00000081853				117	0	0	73	49	40.1639
TCOF1	0	genome.wustl.edu	37	5	149769545	149769545	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	5	149769545	149769545	C	T	SNP	TCOF1	ENST00000451292	human	ensembl	74_37	+1	known	missense	c.3253	p.R1085W	0.001	NULL	pfam_TCS_treacle,smart_LisH_dimerisation,pfscan_LisH_dimerisation,prints_Treacle-like_TCS	-	no_errors	TCOF1	HGNC	ENSG00000070814				23	0	0	17	7	29.1667
DCTN4	0	genome.wustl.edu	37	5	150095168	150095168	+	Silent	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	5	150095168	150095168	G	A	SNP	DCTN4	ENST00000446090	human	ensembl	74_37	-1	known	silent	c.1149	p.Y383	0.861	pfam_Dynactin_p62	pfam_Dynactin_p62	-	no_errors	DCTN4	HGNC	ENSG00000132912				46	0	0	33	16	32.6531
GALNT10	0	genome.wustl.edu	37	5	153760082	153760082	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	5	153760082	153760082	G	A	SNP	GALNT10	ENST00000297107	human	ensembl	74_37	+1	known	missense	c.829	p.E277K	0.999	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT10	HGNC	ENSG00000164574				141	1	0.704225	88	50	36.2319
SPDL1	0	genome.wustl.edu	37	5	169031164	169031164	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	5	169031164	169031164	T	C	SNP	SPDL1	ENST00000265295	human	ensembl	74_37	+1	known	missense	c.1771	p.Y591H	0.520	NULL	NULL	-	no_errors	SPDL1	HGNC	ENSG00000040275				98	0	0	60	47	43.9252
CDHR2	0	genome.wustl.edu	37	5	176017621	176017621	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	5	176017621	176017621	G	T	SNP	CDHR2	ENST00000261944	human	ensembl	74_37	+1	known	nonsense	c.3472	p.G1158*	0.293	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDHR2	HGNC	ENSG00000074276				91	0	0	71	4	5.33333
PROP1	0	genome.wustl.edu	37	5	177419842	177419842	+	Silent	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	5	177419842	177419842	G	A	SNP	PROP1	ENST00000308304	human	ensembl	74_37	-1	known	silent	c.549	p.G183	0.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif	-	no_errors	PROP1	HGNC	ENSG00000175325				17	0	0	8	10	55.5556
SQSTM1	0	genome.wustl.edu	37	5	179250912	179250912	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	5	179250912	179250912	G	A	SNP	SQSTM1	ENST00000389805	human	ensembl	74_37	+1	known	missense	c.356	p.R119H	0.000	NULL	pfam_Znf_ZZ,pfam_OPR_PB1,superfamily_UBA-like,smart_OPR_PB1,smart_Znf_ZZ,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_ZZ	-	no_errors	SQSTM1	HGNC	ENSG00000161011				32	0	0	31	15	32.6087
FLT4	0	genome.wustl.edu	37	5	180046728	180046728	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	5	180046728	180046728	C	T	SNP	FLT4	ENST00000261937	human	ensembl	74_37	-1	known	missense	c.2584	p.A862T	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_VEGFR3_rcpt	-	no_errors	FLT4	HGNC	ENSG00000037280				56	0	0	42	32	43.2432
CDH12	0	genome.wustl.edu	37	5	21802491	21802491	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	5	21802491	21802491	T	G	SNP	CDH12	ENST00000382254	human	ensembl	74_37	-1	known	missense	c.1041	p.K347N	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH12	HGNC	ENSG00000154162				81	0	0	71	7	8.97436
CDH10	0	genome.wustl.edu	37	5	24509890	24509890	+	Silent	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	5	24509890	24509890	T	C	SNP	CDH10	ENST00000264463	human	ensembl	74_37	-1	known	silent	c.1041	p.K347	0.994	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH10	HGNC	ENSG00000040731				64	0	0	43	16	27.1186
PDZD2	0	genome.wustl.edu	37	5	32074648	32074648	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	5	32074648	32074648	A	G	SNP	PDZD2	ENST00000282493	human	ensembl	74_37	+1	known	missense	c.3436	p.T1146A	0.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD2	HGNC	ENSG00000133401				33	0	0	26	10	27.7778
PDZD2	0	genome.wustl.edu	37	5	32098700	32098700	+	Silent	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	5	32098700	32098700	T	C	SNP	PDZD2	ENST00000282493	human	ensembl	74_37	+1	known	silent	c.8178	p.G2726	0.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD2	HGNC	ENSG00000133401				32	0	0	26	17	39.5349
SPEF2	0	genome.wustl.edu	37	5	35641550	35641550	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	5	35641550	35641550	T	G	SNP	SPEF2	ENST00000356031	human	ensembl	74_37	+1	known	missense	c.179	p.L60R	1.000	pfam_DUF1042,superfamily_CH-domain,pfscan_CH-domain	pfam_DUF1042,pfam_Adenylate_kin,pfam_HATC_dom_C,superfamily_P-loop_NTPase,superfamily_CH-domain,pfscan_CH-domain	-	no_errors	SPEF2	HGNC	ENSG00000152582				77	0	0	85	16	15.8416
SPEF2	0	genome.wustl.edu	37	5	35793420	35793420	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	5	35793420	35793420	A	G	SNP	SPEF2	ENST00000356031	human	ensembl	74_37	+1	known	missense	c.4714	p.I1572V	0.536	NULL	pfam_DUF1042,pfam_Adenylate_kin,pfam_HATC_dom_C,superfamily_P-loop_NTPase,superfamily_CH-domain,pfscan_CH-domain	-	no_errors	SPEF2	HGNC	ENSG00000152582				64	0	0	56	6	9.67742
NUP155	0	genome.wustl.edu	37	5	37299658	37299658	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	5	37299658	37299658	A	T	SNP	NUP155	ENST00000231498	human	ensembl	74_37	-1	known	missense	c.3574	p.F1192I	1.000	pfam_Nucleoporin_Nup133/Nup155_C	pfam_Nucleoporin_Nup133/Nup155_C,pfam_Nucleoporin_Nup133/Nup155_N,superfamily_WD40_repeat_dom	-	no_errors	NUP155	HGNC	ENSG00000113569				89	0	0	47	35	42.6829
HCN1	0	genome.wustl.edu	37	5	45396642	45396642	+	Silent	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	5	45396642	45396642	G	A	SNP	HCN1	ENST00000303230	human	ensembl	74_37	-1	known	silent	c.1182	p.T394	0.000	prints_K_chnl_volt-dep_EAG/ELK/ERG	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	HCN1	HGNC	ENSG00000164588				40	0	0	19	13	40.625
ADAMTS16	0	genome.wustl.edu	37	5	5303392	5303392	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	5	5303392	5303392	G	T	SNP	ADAMTS16	ENST00000274181	human	ensembl	74_37	+1	known	missense	c.2801	p.G934V	0.999	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS16	HGNC	ENSG00000145536				11	0	0	7	5	41.6667
SKIV2L2	0	genome.wustl.edu	37	5	54674186	54674186	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	5	54674186	54674186	A	G	SNP	SKIV2L2	ENST00000230640	human	ensembl	74_37	+1	known	missense	c.1855	p.N619D	1.000	pirsf_RNA_helicase_ATP-dep_SK12/DOB1	pfam_DSH_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pirsf_RNA_helicase_ATP-dep_SK12/DOB1,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SKIV2L2	HGNC	ENSG00000039123				47	0	0	42	25	37.3134
MAP3K1	0	genome.wustl.edu	37	5	56181765	56181765	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	5	56181765	56181765	C	T	SNP	MAP3K1	ENST00000399503	human	ensembl	74_37	+1	novel	missense	c.3989	p.S1330L	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015				50	0	0	36	13	26.5306
RGS7BP	0	genome.wustl.edu	37	5	63871704	63871704	+	Silent	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	5	63871704	63871704	C	T	SNP	RGS7BP	ENST00000334025	human	ensembl	74_37	+1	known	silent	c.436	p.L146	1.000	NULL	NULL	-	no_errors	RGS7BP	HGNC	ENSG00000186479				94	0	0	58	19	24.6753
NLN	0	genome.wustl.edu	37	5	65105422	65105422	+	Silent	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	5	65105422	65105422	G	A	SNP	NLN	ENST00000380985	human	ensembl	74_37	+1	known	silent	c.1608	p.V536	0.998	pfam_Pept_M3A_M3B	pfam_Pept_M3A_M3B	-	no_errors	NLN	HGNC	ENSG00000123213				104	0	0	69	49	41.5254
NLN	0	genome.wustl.edu	37	5	65105492	65105492	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	5	65105492	65105492	C	A	SNP	NLN	ENST00000380985	human	ensembl	74_37	+1	known	missense	c.1678	p.L560I	1.000	pfam_Pept_M3A_M3B	pfam_Pept_M3A_M3B	-	no_errors	NLN	HGNC	ENSG00000123213				68	0	0	47	28	37.3333
VCAN	0	genome.wustl.edu	37	5	82816658	82816658	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	5	82816658	82816658	A	G	SNP	VCAN	ENST00000265077	human	ensembl	74_37	+1	known	missense	c.2533	p.S845G	0.244	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_EG-like_dom,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Link,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link	-	no_errors	VCAN	HGNC	ENSG00000038427				139	0	0	123	7	5.38462
SEC63	0	genome.wustl.edu	37	6	108214708	108214708	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	6	108214708	108214708	T	A	SNP	SEC63	ENST00000369002	human	ensembl	74_37	-1	known	missense	c.1652	p.Q551L	1.000	superfamily_ARM-type_fold,smart_Sec63-dom	pfam_Sec63-dom,pfam_DnaJ_domain,superfamily_DnaJ_domain,superfamily_ARM-type_fold,smart_DnaJ_domain,smart_Sec63-dom,prints_DnaJ_domain,pfscan_DnaJ_domain	-	no_errors	SEC63	HGNC	ENSG00000025796				108	0	0	123	7	5.38462
MAN1A1	0	genome.wustl.edu	37	6	119670101	119670101	+	Silent	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	6	119670101	119670101	G	A	SNP	MAN1A1	ENST00000368468	human	ensembl	74_37	-1	known	silent	c.130	p.L44	1.000	NULL	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	MAN1A1	HGNC	ENSG00000111885				19	0	0	4	5	55.5556
PHACTR1	0	genome.wustl.edu	37	6	13283733	13283733	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	6	13283733	13283733	A	G	SNP	PHACTR1	ENST00000379335	human	ensembl	74_37	+1	known	missense	c.281	p.D94G	1.000	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR1	HGNC	ENSG00000112137				91	0	0	61	25	29.0698
TAAR1	0	genome.wustl.edu	37	6	132966361	132966361	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	6	132966361	132966361	A	G	SNP	TAAR1	ENST00000275216	human	ensembl	74_37	-1	known	missense	c.782	p.L261P	0.998	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_GPCR_Rhodpsn,prints_TAAR1,prints_TAAR_fam,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	TAAR1	HGNC	ENSG00000146399				130	1	0.763359	83	42	33.6
TXLNB	0	genome.wustl.edu	37	6	139563701	139563701	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	6	139563701	139563701	G	A	SNP	TXLNB	ENST00000358430	human	ensembl	74_37	-1	known	missense	c.2017	p.R673C	0.016	NULL	pfam_Taxilin_fam	-	no_errors	TXLNB	HGNC	ENSG00000164440				36	0	0	31	22	41.5094
SHPRH	0	genome.wustl.edu	37	6	146240594	146240594	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	6	146240594	146240594	G	A	SNP	SHPRH	ENST00000367503	human	ensembl	74_37	-1	known	missense	c.4054	p.R1352C	1.000	superfamily_P-loop_NTPase	pfam_SNF2_N,pfam_Histone_H1/H5_H15,superfamily_P-loop_NTPase,superfamily_Znf_FYVE_PHD,superfamily_WW_dom,smart_Helicase_ATP-bd,smart_Histone_H1/H5_H15,smart_Znf_PHD,smart_Znf_RING,smart_Helicase_C,pfscan_Znf_RING,pfscan_Helicase_C	-	no_errors	SHPRH	HGNC	ENSG00000146414				91	0	0	68	42	38.1818
TAB2	0	genome.wustl.edu	37	6	149700256	149700256	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	6	149700256	149700256	G	A	SNP	TAB2	ENST00000286332	human	ensembl	74_37	+1	known	missense	c.1205	p.R402Q	1.000	NULL	pfam_CUE,pfam_Znf_RanBP2,smart_CUE,smart_Znf_RanBP2,pfscan_CUE,pfscan_Znf_RanBP2	-	no_errors	TAB2	HGNC	ENSG00000055208				63	0	0	29	25	46.2963
LATS1	0	genome.wustl.edu	37	6	149983013	149983013	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	6	149983013	149983013	C	T	SNP	LATS1	ENST00000253339	human	ensembl	74_37	-1	known	missense	c.3245	p.R1082K	1.000	pfam_Pkinase_C	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,pfam_UBA/Ts_N,superfamily_Kinase-like_dom,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	LATS1	HGNC	ENSG00000131023				101	0	0	59	28	32.1839
CAP2	0	genome.wustl.edu	37	6	17507473	17507473	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	6	17507473	17507473	G	A	SNP	CAP2	ENST00000229922	human	ensembl	74_37	+1	known	missense	c.374	p.R125Q	1.000	pfam_Adenylate_cyclase-assoc_CAP_N,superfamily_Adenylate_cyclase-assoc_CAP_N	pfam_Adenylate_cyclase-assoc_CAP_N,pfam_Adenylate_cyclase-assoc_CAP_C,superfamily_Adenylate_cyclase-assoc_CAP_N,superfamily_Adenylate_cyclase-assoc_CAP_C,smart_CARP_motif	-	no_errors	CAP2	HGNC	ENSG00000112186				81	0	0	33	35	51.4706
SLC17A1	0	genome.wustl.edu	37	6	25813374	25813374	+	Silent	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	6	25813374	25813374	T	C	SNP	SLC17A1	ENST00000244527	human	ensembl	74_37	-1	known	silent	c.684	p.P228	0.319	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Pi_cotranspt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Pi_cotranspt	-	no_errors	SLC17A1	HGNC	ENSG00000124568				87	0	0	72	9	11.1111
HLA-B	0	genome.wustl.edu	37	6	31324898	31324898	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	6	31324898	31324898	A	G	SNP	HLA-B	ENST00000412585	human	ensembl	74_37	-1	known	missense	c.38	p.L13P	0.005	NULL	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,pfam_MHC_I_a_C,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom,prints_MHC_I_a	-	no_errors	HLA-B	HGNC	ENSG00000234745				16	0	0	6	12	66.6667
VARS	0	genome.wustl.edu	37	6	31760167	31760167	+	Splice_Site	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	6	31760167	31760167	A	G	SNP	VARS	ENST00000375663	human	ensembl	74_37	-1	known	splice_site	c.786+2	e4+2	0.996	-	-	-	no_errors	VARS	HGNC	ENSG00000204394				83	0	0	34	30	46.875
HSPA1L	0	genome.wustl.edu	37	6	31779676	31779676	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	6	31779676	31779676	T	C	SNP	HSPA1L	ENST00000375654	human	ensembl	74_37	-1	known	missense	c.74	p.H25R	1.000	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA1L	HGNC	ENSG00000204390				77	0	0	49	28	36.3636
PRRT1	0	genome.wustl.edu	37	6	32117114	32117114	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	6	32117114	32117114	C	T	SNP	PRRT1	ENST00000211413	human	ensembl	74_37	-1	known	missense	c.806	p.R269Q	1.000	pfam_CD225/Dispanin_fam	pfam_CD225/Dispanin_fam	-	no_errors	PRRT1	HGNC	ENSG00000204314				20	0	0	12	6	33.3333
USP49	0	genome.wustl.edu	37	6	41767603	41767603	+	Silent	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	6	41767603	41767603	T	C	SNP	USP49	ENST00000373009	human	ensembl	74_37	-1	known	silent	c.1635	p.L545	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP49	HGNC	ENSG00000164663				121	0	0	77	40	34.188
TTBK1	0	genome.wustl.edu	37	6	43252030	43252030	+	Silent	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	6	43252030	43252030	G	A	SNP	TTBK1	ENST00000259750	human	ensembl	74_37	+1	known	silent	c.3552	p.L1184	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TTBK1	HGNC	ENSG00000146216				14	0	0	11	6	35.2941
ICK	0	genome.wustl.edu	37	6	52869977	52869977	+	Silent	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	6	52869977	52869977	G	A	SNP	ICK	ENST00000350082	human	ensembl	74_37	-1	known	silent	c.1869	p.D623	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ICK	HGNC	ENSG00000112144				96	0	0	59	50	45.8716
F13A1	0	genome.wustl.edu	37	6	6196106	6196106	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	6	6196106	6196106	C	T	SNP	F13A1	ENST00000264870	human	ensembl	74_37	-1	known	missense	c.1229	p.C410Y	1.000	NULL	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	F13A1	HGNC	ENSG00000124491				24	0	0	16	8	33.3333
BAI3	0	genome.wustl.edu	37	6	70070837	70070837	+	Silent	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	6	70070837	70070837	T	C	SNP	BAI3	ENST00000370598	human	ensembl	74_37	+1	known	silent	c.3672	p.D1224	0.624	NULL	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_CUB_dom,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI3	HGNC	ENSG00000135298				72	0	0	40	23	36.5079
CD109	0	genome.wustl.edu	37	6	74472143	74472143	+	Silent	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	6	74472143	74472143	G	A	SNP	CD109	ENST00000287097	human	ensembl	74_37	+1	known	silent	c.795	p.T265	0.352	NULL	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	CD109	HGNC	ENSG00000156535				43	0	0	27	26	49.0566
COL12A1	0	genome.wustl.edu	37	6	75855832	75855832	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	6	75855832	75855832	T	C	SNP	COL12A1	ENST00000322507	human	ensembl	74_37	-1	known	missense	c.4546	p.T1516A	0.004	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799				53	0	0	63	6	8.69565
IBTK	0	genome.wustl.edu	37	6	82950021	82950021	+	Silent	SNP	G	G	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	6	82950021	82950021	G	T	SNP	IBTK	ENST00000306270	human	ensembl	74_37	-1	known	silent	c.183	p.S61	0.730	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Reg_chr_condens,pfam_BTB_POZ,pfam_Ankyrin_rpt,superfamily_RCC1/BLIP-II,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like,pfscan_Reg_chr_condens	-	no_errors	IBTK	HGNC	ENSG00000005700				91	0	0	46	35	43.2099
SNAP91	0	genome.wustl.edu	37	6	84302947	84302947	+	Silent	SNP	T	T	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	6	84302947	84302947	T	G	SNP	SNAP91	ENST00000369694	human	ensembl	74_37	-1	known	silent	c.1728	p.A576	0.989	NULL	pfam_ANTH_dom,pfam_Epsin_dom_N,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N	-	no_errors	SNAP91	HGNC	ENSG00000065609				14	0	0	12	6	33.3333
CASP8AP2	0	genome.wustl.edu	37	6	90577062	90577062	+	RNA	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	6	90577062	90577062	C	T	SNP	CASP8AP2	ENST00000237177	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.995	-	-	-	no_errors	CASP8AP2	HGNC	ENSG00000118412				51	0	0	37	25	40.3226
PNISR	0	genome.wustl.edu	37	6	99857075	99857075	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	6	99857075	99857075	G	T	SNP	PNISR	ENST00000369239	human	ensembl	74_37	-1	known	missense	c.647	p.P216H	1.000	NULL	NULL	-	no_errors	PNISR	HGNC	ENSG00000132424				31	0	0	28	7	20
PCOLCE-AS1	0	genome.wustl.edu	37	7	100200207	100200207	+	RNA	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	7	100200207	100200207	G	A	SNP	PCOLCE-AS1	ENST00000442166	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	PCOLCE-AS1	HGNC	ENSG00000224729				41	0	0	22	14	38.8889
LRRN3	0	genome.wustl.edu	37	7	110762919	110762919	+	Silent	SNP	C	C	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	7	110762919	110762919	C	A	SNP	LRRN3	ENST00000308478	human	ensembl	74_37	+1	known	silent	c.91	p.R31	0.879	pfam_LRR-contain_N,smart_LRR-contain_N	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRRN3	HGNC	ENSG00000173114				138	0	0	68	5	6.84932
FOXP2	0	genome.wustl.edu	37	7	114269985	114269985	+	Silent	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	7	114269985	114269985	A	G	SNP	FOXP2	ENST00000408937	human	ensembl	74_37	+1	known	silent	c.597	p.Q199	0.894	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXP2	HGNC	ENSG00000128573				43	0	0	33	11	25
SPAM1	0	genome.wustl.edu	37	7	123594028	123594028	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	7	123594028	123594028	T	C	SNP	SPAM1	ENST00000340011	human	ensembl	74_37	+1	known	missense	c.404	p.M135T	0.595	pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase	pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase,prints_Hyaluronidase	-	no_errors	SPAM1	HGNC	ENSG00000106304				134	0	0	81	51	38.6364
OPN1SW	0	genome.wustl.edu	37	7	128415565	128415565	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	7	128415565	128415565	C	T	SNP	OPN1SW	ENST00000249389	human	ensembl	74_37	-1	known	missense	c.280	p.A94T	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Opsin_blue,prints_GPCR_Rhodpsn,prints_Opsin	-	no_errors	OPN1SW	HGNC	ENSG00000128617				217	0	0	99	70	41.4201
FLNC	0	genome.wustl.edu	37	7	128489424	128489424	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	7	128489424	128489424	C	T	SNP	FLNC	ENST00000325888	human	ensembl	74_37	+1	known	missense	c.4991	p.T1664M	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNC	HGNC	ENSG00000128591				31	0	0	17	12	41.3793
MEST	0	genome.wustl.edu	37	7	130144785	130144785	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	7	130144785	130144785	C	T	SNP	MEST	ENST00000223215	human	ensembl	74_37	+1	known	missense	c.896	p.T299M	1.000	pfam_AB_hydrolase_1	pfam_AB_hydrolase_1,pfam_DUF1057,prints_Epox_hydrolase-like	-	no_errors	MEST	HGNC	ENSG00000106484				73	0	0	47	25	34.7222
TAS2R60	0	genome.wustl.edu	37	7	143141266	143141266	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	7	143141266	143141266	G	A	SNP	TAS2R60	ENST00000332690	human	ensembl	74_37	+1	known	missense	c.721	p.A241T	0.265	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R60	HGNC	ENSG00000185899				106	0	0	84	23	21.4953
CNTNAP2	0	genome.wustl.edu	37	7	146536934	146536934	+	Silent	SNP	C	C	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	7	146536934	146536934	C	A	SNP	CNTNAP2	ENST00000361727	human	ensembl	74_37	+1	known	silent	c.340	p.R114	1.000	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,pfam_EG-like_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP2	HGNC	ENSG00000174469				62	0	0	30	20	40
HTR5A	0	genome.wustl.edu	37	7	154875885	154875885	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	7	154875885	154875885	G	T	SNP	HTR5A	ENST00000287907	human	ensembl	74_37	+1	known	missense	c.762	p.Q254H	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_5HT5A_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_5HT5A_rcpt,prints_5HT_rcpt	-	no_errors	HTR5A	HGNC	ENSG00000157219				25	0	0	26	7	21.2121
SNX13	0	genome.wustl.edu	37	7	17873707	17873707	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	7	17873707	17873707	G	T	SNP	SNX13	ENST00000428135	human	ensembl	74_37	-1	known	missense	c.1565	p.P522H	1.000	NULL	pfam_Phox_assoc,pfam_Sorting_nexin_C,pfam_Phox,pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_Phox,superfamily_Cyt_c_oxidase_su5A/6,smart_PX_assoc_Snx13,smart_Regulat_G_prot_signal_superfam,smart_Phox,pfscan_Phox,pfscan_Phox_assoc,pfscan_Regulat_G_prot_signal_superfam	-	no_errors	SNX13	HGNC	ENSG00000071189				19	0	0	13	8	38.0952
RAPGEF5	0	genome.wustl.edu	37	7	22184666	22184666	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	7	22184666	22184666	C	T	SNP	RAPGEF5	ENST00000344041	human	ensembl	74_37	-1	known	missense	c.1723	p.A575T	0.999	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF5	HGNC	ENSG00000136237				41	0	0	24	13	35.1351
EVX1	0	genome.wustl.edu	37	7	27282961	27282961	+	Silent	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	7	27282961	27282961	C	T	SNP	EVX1	ENST00000496902	human	ensembl	74_37	+1	known	silent	c.312	p.L104	0.067	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	EVX1	HGNC	ENSG00000106038				8	0	0	3	4	57.1429
ZNRF2	0	genome.wustl.edu	37	7	30395357	30395357	+	Silent	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	7	30395357	30395357	T	C	SNP	ZNRF2	ENST00000323037	human	ensembl	74_37	+1	known	silent	c.579	p.S193	0.997	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	ZNRF2	HGNC	ENSG00000180233				60	0	0	53	9	14.5161
NPC1L1	0	genome.wustl.edu	37	7	44555476	44555476	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	7	44555476	44555476	C	T	SNP	NPC1L1	ENST00000289547	human	ensembl	74_37	-1	known	missense	c.3803	p.R1268H	1.000	pfam_Patched	pfam_Patched,pfscan_SSD	-	no_errors	NPC1L1	HGNC	ENSG00000015520				49	0	0	30	14	31.8182
TNS3	0	genome.wustl.edu	37	7	47467961	47467961	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	7	47467961	47467961	C	T	SNP	TNS3	ENST00000311160	human	ensembl	74_37	-1	known	missense	c.338	p.R113H	1.000	smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_dom,smart_Tyr_Pase_cat,smart_SH2,smart_PTB/PI_dom,pfscan_SH2,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS3	HGNC	ENSG00000136205				80	0	0	53	30	36.1446
FGL2	0	genome.wustl.edu	37	7	76828797	76828797	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	7	76828797	76828797	T	C	SNP	FGL2	ENST00000248598	human	ensembl	74_37	-1	known	missense	c.314	p.D105G	0.949	NULL	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	FGL2	HGNC	ENSG00000127951				88	0	0	54	45	45.4545
PCLO	0	genome.wustl.edu	37	7	82544043	82544043	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	7	82544043	82544043	A	C	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	missense	c.13259	p.F4420C	1.000	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				36	0	0	24	12	33.3333
PCLO	0	genome.wustl.edu	37	7	82580251	82580251	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	7	82580251	82580251	C	T	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	missense	c.9653	p.R3218H	0.998	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				79	0	0	43	28	39.4366
STEAP2	0	genome.wustl.edu	37	7	89856641	89856641	+	Silent	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	7	89856641	89856641	T	C	SNP	STEAP2	ENST00000287908	human	ensembl	74_37	+1	known	silent	c.849	p.Y283	0.914	pfam_Fe3_Rdtase_TM_dom	pfam_Fe3_Rdtase_TM_dom	-	no_errors	STEAP2	HGNC	ENSG00000157214				98	0	0	55	36	39.5604
AKAP9	0	genome.wustl.edu	37	7	91712572	91712572	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	7	91712572	91712572	T	C	SNP	AKAP9	ENST00000359028	human	ensembl	74_37	+1	known	missense	c.8285	p.L2762S	0.001	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB	-	no_errors	AKAP9	HGNC	ENSG00000127914				86	0	0	52	49	48.5149
COL1A2	0	genome.wustl.edu	37	7	94056940	94056940	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	7	94056940	94056940	G	A	SNP	COL1A2	ENST00000297268	human	ensembl	74_37	+1	known	missense	c.3269	p.G1090D	1.000	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fib_collagen_C	-	no_errors	COL1A2	HGNC	ENSG00000164692				91	0	0	45	32	41.5584
SHFM1	0	genome.wustl.edu	37	7	96339088	96339088	+	RNA	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	7	96339088	96339088	C	T	SNP	SHFM1	ENST00000466986	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SHFM1	HGNC	ENSG00000127922				101	0	0	58	40	40.8163
DLX6	0	genome.wustl.edu	37	7	96639211	96639211	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	7	96639211	96639211	C	T	SNP	DLX6	ENST00000518156	human	ensembl	74_37	+1	known	missense	c.734	p.S245L	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	DLX6	HGNC	ENSG00000006377				27	0	0	16	12	42.8571
TRRAP	0	genome.wustl.edu	37	7	98567799	98567799	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	7	98567799	98567799	C	T	SNP	TRRAP	ENST00000359863	human	ensembl	74_37	+1	known	missense	c.7556	p.P2519L	1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	TRRAP	HGNC	ENSG00000196367				68	0	0	30	20	40
RP1L1	0	genome.wustl.edu	37	8	10480562	10480562	+	Silent	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	8	10480562	10480562	G	A	SNP	RP1L1	ENST00000382483	human	ensembl	74_37	-1	known	silent	c.150	p.R50	1.000	smart_Doublecortin_dom,pfscan_Doublecortin_dom	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1L1	HGNC	ENSG00000183638				34	0	0	20	10	33.3333
CSMD3	0	genome.wustl.edu	37	8	113318350	113318350	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	8	113318350	113318350	G	A	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	nonsense	c.7957	p.R2653*	0.914	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				97	0	0	63	37	37
EXT1	0	genome.wustl.edu	37	8	118831966	118831966	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	8	118831966	118831966	C	A	SNP	EXT1	ENST00000378204	human	ensembl	74_37	-1	known	missense	c.1485	p.Q495H	1.000	pfam_HexNAc_Trfase_a	pfam_HexNAc_Trfase_a,pfam_Exostosin	-	no_errors	EXT1	HGNC	ENSG00000182197				86	0	0	77	8	9.41176
NOV	0	genome.wustl.edu	37	8	120430440	120430440	+	Silent	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	8	120430440	120430440	T	C	SNP	NOV	ENST00000259526	human	ensembl	74_37	+1	known	silent	c.453	p.P151	0.000	pfam_VWF_C,smart_VWF_C,pirsf_IGFBP_CNN,pfscan_VWF_C	pfam_IGFBP-like,pfam_Cys_knot,pfam_VWF_C,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	NOV	HGNC	ENSG00000136999				87	0	0	94	16	14.5455
TRAPPC9	0	genome.wustl.edu	37	8	141321405	141321405	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	8	141321405	141321405	C	T	SNP	TRAPPC9	ENST00000389328	human	ensembl	74_37	-1	known	missense	c.1858	p.A620T	0.997	NULL	pfam_TRAPP_II_complex_Trs120	-	no_errors	TRAPPC9	HGNC	ENSG00000167632				48	0	0	26	15	36.5854
TSNARE1	0	genome.wustl.edu	37	8	143427155	143427155	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	8	143427155	143427155	C	A	SNP	TSNARE1	ENST00000307180	human	ensembl	74_37	-1	known	missense	c.187	p.G63C	0.858	NULL	pfam_T_SNARE_dom,superfamily_t-SNARE,smart_Syntaxin_N,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	TSNARE1	HGNC	ENSG00000171045				37	0	0	26	7	21.2121
BAI1	0	genome.wustl.edu	37	8	143558823	143558823	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	8	143558823	143558823	C	T	SNP	BAI1	ENST00000323289	human	ensembl	74_37	+1	known	missense	c.1300	p.R434C	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_GPCR_2_secretin-like,pfam_Thrombospondin_1_rpt,pfam_DUF3497,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	BAI1	HGNC	ENSG00000181790				30	0	0	22	7	24.1379
MROH6	0	genome.wustl.edu	37	8	144652165	144652165	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	8	144652165	144652165	C	T	SNP	MROH6	ENST00000398882	human	ensembl	74_37	-1	known	missense	c.1114	p.A372T	0.048	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	MROH6	HGNC	ENSG00000204839				20	0	0	20	13	39.3939
NRBP2	0	genome.wustl.edu	37	8	144919329	144919329	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	8	144919329	144919329	A	G	SNP	NRBP2	ENST00000327830	human	ensembl	74_37	-1	known	missense	c.416	p.L139P	1.000	NULL	superfamily_Kinase-like_dom	-	no_errors	NRBP2	HGNC	ENSG00000185189				30	0	0	13	16	55.1724
PRKDC	0	genome.wustl.edu	37	8	48848299	48848299	+	Silent	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	8	48848299	48848299	A	G	SNP	PRKDC	ENST00000314191	human	ensembl	74_37	-1	known	silent	c.1440	p.S480	1.000	superfamily_ARM-type_fold	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729				101	0	0	90	5	5.26316
XKR4	0	genome.wustl.edu	37	8	56015465	56015465	+	Silent	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	8	56015465	56015465	C	T	SNP	XKR4	ENST00000327381	human	ensembl	74_37	+1	known	silent	c.417	p.R139	1.000	pfam_Transport_prot_XK	pfam_Transport_prot_XK	-	no_errors	XKR4	HGNC	ENSG00000206579				22	0	0	29	15	34.0909
VCPIP1	0	genome.wustl.edu	37	8	67577294	67577294	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	8	67577294	67577294	A	C	SNP	VCPIP1	ENST00000310421	human	ensembl	74_37	-1	known	missense	c.1900	p.F634V	1.000	NULL	pfam_OTU,pfscan_OTU	-	no_errors	VCPIP1	HGNC	ENSG00000175073				168	0	0	123	74	37.5635
ARFGEF1	0	genome.wustl.edu	37	8	68111330	68111330	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	8	68111330	68111330	T	C	SNP	ARFGEF1	ENST00000262215	human	ensembl	74_37	-1	known	missense	c.5389	p.K1797E	1.000	NULL	pfam_Sec7_dom,pfam_DUF1981_Sec7_assoc,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	-	no_errors	ARFGEF1	HGNC	ENSG00000066777				103	0	0	68	45	39.823
C8orf34	0	genome.wustl.edu	37	8	69434189	69434189	+	Silent	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	8	69434189	69434189	C	T	SNP	C8orf34	ENST00000518698	human	ensembl	74_37	+1	known	silent	c.921	p.G307	0.999	NULL	superfamily_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	C8orf34	HGNC	ENSG00000165084				73	0	0	48	36	42.8571
EYA1	0	genome.wustl.edu	37	8	72123448	72123448	+	Silent	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	8	72123448	72123448	T	C	SNP	EYA1	ENST00000340726	human	ensembl	74_37	-1	known	silent	c.1641	p.R547	0.998	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_EYA	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_EYA	-	no_errors	EYA1	HGNC	ENSG00000104313				109	0	0	85	13	13.2653
ZNF704	0	genome.wustl.edu	37	8	81733851	81733851	+	Splice_Site	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	8	81733851	81733851	C	T	SNP	ZNF704	ENST00000327835	human	ensembl	74_37	-1	known	splice_site	c.1-1	e1-1	1.000	-	-	-	no_errors	ZNF704	HGNC	ENSG00000164684				104	0	0	70	42	37.5
RALYL	0	genome.wustl.edu	37	8	85774590	85774590	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	8	85774590	85774590	G	A	SNP	RALYL	ENST00000521268	human	ensembl	74_37	+1	known	missense	c.473	p.R158H	1.000	pirsf_hnRNP_C_Raly	pfam_RRM_dom,smart_RRM_dom,pirsf_hnRNP_C_Raly,pfscan_RRM_dom	-	no_errors	RALYL	HGNC	ENSG00000184672				35	0	0	13	12	48
TNKS	0	genome.wustl.edu	37	8	9609294	9609294	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	8	9609294	9609294	C	T	SNP	TNKS	ENST00000310430	human	ensembl	74_37	+1	known	missense	c.3008	p.A1003V	1.000	NULL	pfam_Ankyrin_rpt,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_SAM_2,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_Poly(ADP-ribose)pol_cat_dom,prints_Ankyrin_rpt	-	no_errors	TNKS	HGNC	ENSG00000173273				89	0	0	72	36	33.3333
OR13C9	0	genome.wustl.edu	37	9	107379859	107379859	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	9	107379859	107379859	C	T	SNP	OR13C9	ENST00000259362	human	ensembl	74_37	-1	known	missense	c.627	p.M209I	0.002	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR13C9	HGNC	ENSG00000136839				92	0	0	68	39	36.4486
MUSK	0	genome.wustl.edu	37	9	113530131	113530131	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	9	113530131	113530131	G	A	SNP	MUSK	ENST00000374448	human	ensembl	74_37	+1	known	missense	c.952	p.A318T	1.000	pfam_Frizzled_dom,superfamily_Frizzled_dom,pfscan_Frizzled_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Frizzled_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Frizzled_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Frizzled_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MUSK	HGNC	ENSG00000030304				142	0	0	97	57	37.013
SUSD1	0	genome.wustl.edu	37	9	114905868	114905868	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	9	114905868	114905868	G	A	SNP	SUSD1	ENST00000374264	human	ensembl	74_37	-1	known	missense	c.409	p.H137Y	0.938	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP	-	no_errors	SUSD1	HGNC	ENSG00000106868				89	0	0	67	40	37.3832
RGS3	0	genome.wustl.edu	37	9	116353631	116353631	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	9	116353631	116353631	G	A	SNP	RGS3	ENST00000350696	human	ensembl	74_37	+1	known	missense	c.3034	p.V1012I	0.002	NULL	pfam_RGS_dom,pfam_C2_dom,pfam_PDZ,superfamily_Regulat_G_prot_signal_superfam,superfamily_C2_dom,superfamily_PDZ,smart_C2_dom,smart_PDZ,smart_Regulat_G_prot_signal_superfam,pfscan_C2_dom,pfscan_PDZ,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS3	HGNC	ENSG00000138835				61	0	0	58	9	13.4328
AKNA	0	genome.wustl.edu	37	9	117122197	117122197	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	9	117122197	117122197	A	T	SNP	AKNA	ENST00000307564	human	ensembl	74_37	-1	known	missense	c.2270	p.V757D	0.469	NULL	pfam_TF_AT-hook	-	no_errors	AKNA	HGNC	ENSG00000106948				64	0	0	34	26	43.3333
C9orf91	0	genome.wustl.edu	37	9	117379548	117379548	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	9	117379548	117379548	C	A	SNP	C9orf91	ENST00000374049	human	ensembl	74_37	+1	known	missense	c.73	p.L25M	0.146	NULL	NULL	-	no_errors	C9orf91	HGNC	ENSG00000157693				26	0	0	12	9	42.8571
TRIM32	0	genome.wustl.edu	37	9	119461306	119461306	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	9	119461306	119461306	C	A	SNP	TRIM32	ENST00000373983	human	ensembl	74_37	+1	known	missense	c.1285	p.L429I	1.000	pfscan_NHL_repeat_subgr	pfam_NHL_repeat,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_NHL_repeat_subgr,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM32	HGNC	ENSG00000119401				258	0	0	148	90	37.8151
OR5C1	0	genome.wustl.edu	37	9	125551855	125551855	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	9	125551855	125551855	T	C	SNP	OR5C1	ENST00000373680	human	ensembl	74_37	+1	known	missense	c.644	p.V215A	0.007	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5C1	HGNC	ENSG00000148215				49	0	0	33	13	28.2609
LMX1B	0	genome.wustl.edu	37	9	129455844	129455844	+	Silent	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	9	129455844	129455844	C	T	SNP	LMX1B	ENST00000355497	human	ensembl	74_37	+1	known	silent	c.783	p.R261	0.319	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LMX1B	HGNC	ENSG00000136944				29	0	0	23	12	34.2857
DNM1	0	genome.wustl.edu	37	9	130980885	130980885	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	9	130980885	130980885	A	G	SNP	DNM1	ENST00000372923	human	ensembl	74_37	+1	known	missense	c.260	p.K87R	1.000	pfam_Dynamin_GTPase,superfamily_P-loop_NTPase,smart_Dynamin_GTPase	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,pfam_Pleckstrin_homology,superfamily_P-loop_NTPase,smart_Dynamin_GTPase,smart_Pleckstrin_homology,smart_GED,pfscan_Pleckstrin_homology,prints_Dynamin_SF	-	no_errors	DNM1	HGNC	ENSG00000106976				55	0	0	28	16	36.3636
TBC1D13	0	genome.wustl.edu	37	9	131570101	131570101	+	Silent	SNP	C	C	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	9	131570101	131570101	C	A	SNP	TBC1D13	ENST00000372648	human	ensembl	74_37	+1	known	silent	c.1146	p.P382	1.000	superfamily_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D13	HGNC	ENSG00000107021				100	0	0	64	38	37.2549
LAMC3	0	genome.wustl.edu	37	9	133901811	133901811	+	Silent	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	9	133901811	133901811	C	T	SNP	LAMC3	ENST00000361069	human	ensembl	74_37	+1	known	silent	c.513	p.Y171	1.000	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_B_type_IV,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMC3	HGNC	ENSG00000050555				40	0	0	13	12	48
GTF3C5	0	genome.wustl.edu	37	9	135917576	135917576	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	9	135917576	135917576	C	A	SNP	GTF3C5	ENST00000372108	human	ensembl	74_37	+1	known	missense	c.256	p.L86I	1.000	pfam_TF_IIIC_su-5	pfam_TF_IIIC_su-5	-	no_errors	GTF3C5	HGNC	ENSG00000148308				58	0	0	59	4	6.34921
RXRA	0	genome.wustl.edu	37	9	137328407	137328407	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	9	137328407	137328407	C	T	SNP	RXRA	ENST00000481739	human	ensembl	74_37	+1	known	missense	c.1336	p.P446S	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,prints_COUP_TF	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Nuc_recep-AF1,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoid-X_rcpt/HNF4,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_COUP_TF,prints_Retinoic_acid_rcpt	-	no_errors	RXRA	HGNC	ENSG00000186350				102	0	0	62	30	32.6087
CAMSAP1	0	genome.wustl.edu	37	9	138703390	138703390	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	9	138703390	138703390	G	A	SNP	CAMSAP1	ENST00000409386	human	ensembl	74_37	-1	known	missense	c.4607	p.A1536V	0.999	pfam_CKK_domain,superfamily_PRC_barrel-like	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrel-like,superfamily_CH-domain	-	no_errors	CAMSAP1	HGNC	ENSG00000130559				23	0	0	14	5	26.3158
NOTCH1	0	genome.wustl.edu	37	9	139409854	139409854	+	Splice_Site	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	9	139409854	139409854	T	C	SNP	NOTCH1	ENST00000277541	human	ensembl	74_37	-1	known	splice_site	c.1904-2	e12-2	1.000	-	-	-	no_errors	NOTCH1	HGNC	ENSG00000148400				31	0	0	24	9	27.2727
C9orf172	0	genome.wustl.edu	37	9	139739752	139739752	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	9	139739752	139739752	G	A	SNP	C9orf172	ENST00000436881	human	ensembl	74_37	+1	known	missense	c.886	p.A296T	0.165	NULL	NULL	-	no_errors	C9orf172	HGNC	ENSG00000232434				19	0	0	13	6	31.5789
CBWD1	0	genome.wustl.edu	37	9	163985	163985	+	Silent	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	9	163985	163985	A	G	SNP	CBWD1	ENST00000356521	human	ensembl	74_37	-1	known	silent	c.483	p.Y161	0.999	pfam_CobW/HypB/UreG_dom,superfamily_P-loop_NTPase	pfam_CobW/HypB/UreG_dom,pfam_Cbl_biosynth_CobW-like_C,superfamily_P-loop_NTPase,superfamily_Cbl_biosynth_CobW-like_C	-	no_errors	CBWD1	HGNC	ENSG00000172785				115	0	0	137	16	10.4575
BNC2	0	genome.wustl.edu	37	9	16435990	16435990	+	Silent	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	9	16435990	16435990	G	A	SNP	BNC2	ENST00000380672	human	ensembl	74_37	-1	known	silent	c.2202	p.G734	0.136	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BNC2	HGNC	ENSG00000173068				68	0	0	44	35	44.3038
CNTLN	0	genome.wustl.edu	37	9	17226276	17226276	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	9	17226276	17226276	A	C	SNP	CNTLN	ENST00000380647	human	ensembl	74_37	+1	known	missense	c.525	p.E175D	1.000	superfamily_Prefoldin	superfamily_Prefoldin	-	no_errors	CNTLN	HGNC	ENSG00000044459				29	0	0	21	10	32.2581
ACER2	0	genome.wustl.edu	37	9	19424786	19424786	+	Silent	SNP	T	T	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	9	19424786	19424786	T	G	SNP	ACER2	ENST00000340967	human	ensembl	74_37	+1	known	silent	c.312	p.A104	0.846	pfam_Ceramidase	pfam_Ceramidase	-	no_errors	ACER2	HGNC	ENSG00000177076				119	0	0	55	44	44.4444
SLC24A2	0	genome.wustl.edu	37	9	19516258	19516258	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	9	19516258	19516258	G	A	SNP	SLC24A2	ENST00000341998	human	ensembl	74_37	-1	known	nonsense	c.1879	p.R627*	0.994	pfam_NaCa_Exmemb,tigrfam_K/Na/Ca-exchanger	pfam_NaCa_Exmemb,tigrfam_K/Na/Ca-exchanger	-	no_errors	SLC24A2	HGNC	ENSG00000155886				165	0	0	86	64	42.6667
IFT74	0	genome.wustl.edu	37	9	26984556	26984556	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	9	26984556	26984556	T	C	SNP	IFT74	ENST00000380062	human	ensembl	74_37	+1	known	missense	c.464	p.M155T	1.000	NULL	NULL	-	no_errors	IFT74	HGNC	ENSG00000096872				101	0	0	75	27	26.4706
C9orf72	0	genome.wustl.edu	37	9	27566788	27566788	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	9	27566788	27566788	C	T	SNP	C9orf72	ENST00000380003	human	ensembl	74_37	-1	known	missense	c.331	p.G111R	1.000	NULL	NULL	-	no_errors	C9orf72	HGNC	ENSG00000147894				70	0	0	48	32	40
TAF1L	0	genome.wustl.edu	37	9	32635575	32635575	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	9	32635575	32635575	C	T	SNP	TAF1L	ENST00000242310	human	ensembl	74_37	-1	known	missense	c.3	p.M1I	0.032	pirsf_TAF1_animal	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728				39	0	0	22	13	37.1429
PRSS3	0	genome.wustl.edu	37	9	33797910	33797910	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	9	33797910	33797910	G	A	SNP	PRSS3	ENST00000361005	human	ensembl	74_37	+1	known	missense	c.455	p.R152H	0.994	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	PRSS3	HGNC	ENSG00000010438				146	0	0	78	52	40
PIGO	0	genome.wustl.edu	37	9	35091339	35091339	+	Silent	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	9	35091339	35091339	G	A	SNP	PIGO	ENST00000341666	human	ensembl	74_37	-1	known	silent	c.2545	p.L849	1.000	NULL	pfam_Phosphodiest/P_Trfase,pfam_Metalloenzyme,pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	PIGO	HGNC	ENSG00000165282				68	0	0	32	21	39.6226
RUSC2	0	genome.wustl.edu	37	9	35558504	35558504	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	9	35558504	35558504	A	G	SNP	RUSC2	ENST00000361226	human	ensembl	74_37	+1	known	missense	c.3281	p.Q1094R	1.000	pfam_Run,pfscan_Run	pfam_Run,pfam_SH3_2,superfamily_SH3_domain,smart_Run,smart_SH3_domain,pfscan_Run,pfscan_SH3_domain	-	no_errors	RUSC2	HGNC	ENSG00000198853				239	0	0	148	73	33.0317
OR13J1	0	genome.wustl.edu	37	9	35869672	35869672	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	9	35869672	35869672	C	T	SNP	OR13J1	ENST00000377981	human	ensembl	74_37	-1	known	missense	c.727	p.A243T	0.033	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR13J1	HGNC	ENSG00000168828				49	0	0	37	19	33.9286
RANBP6	0	genome.wustl.edu	37	9	6013657	6013657	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	9	6013657	6013657	A	C	SNP	RANBP6	ENST00000259569	human	ensembl	74_37	-1	known	missense	c.1951	p.L651V	1.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	RANBP6	HGNC	ENSG00000137040				165	0	0	126	7	5.26316
LOC100996870	0	genome.wustl.edu	37	9	66466226	66466226	+	RNA	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	9	66466226	66466226	A	G	SNP	LOC100996870	ENST00000424345	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	RP11-262H14.1	Clone_based_vega_gene	ENSG00000238113				39	0	0	30	5	14.2857
TMEM2	0	genome.wustl.edu	37	9	74360369	74360369	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	9	74360369	74360369	G	A	SNP	TMEM2	ENST00000377044	human	ensembl	74_37	-1	known	missense	c.599	p.A200V	1.000	pfam_G8_domain	pfam_G8_domain,superfamily_Pectin_lyase_fold/virulence	-	no_errors	TMEM2	HGNC	ENSG00000135048				142	0	0	95	53	35.8108
GNAQ	0	genome.wustl.edu	37	9	80336240	80336240	+	Silent	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	9	80336240	80336240	T	C	SNP	GNAQ	ENST00000286548	human	ensembl	74_37	-1	known	silent	c.1079	p.*360	0.997	NULL	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_Q,prints_Fungi_Gprotein_alpha	-	no_errors	GNAQ	HGNC	ENSG00000156052				65	0	0	16	15	48.3871
SPATA31D5P	0	genome.wustl.edu	37	9	84530473	84530473	+	RNA	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	9	84530473	84530473	T	C	SNP	SPATA31D5P	ENST00000527857	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	SPATA31D5P	HGNC	ENSG00000240632				62	0	0	38	27	41.5385
PTPRD	0	genome.wustl.edu	37	9	8484205	8484205	+	Silent	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	9	8484205	8484205	A	G	SNP	PTPRD	ENST00000356435	human	ensembl	74_37	-1	known	silent	c.3327	p.R1109	0.773	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRD	HGNC	ENSG00000153707				75	0	0	61	5	7.57576
PHF2	0	genome.wustl.edu	37	9	96428055	96428055	+	Silent	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	9	96428055	96428055	T	C	SNP	PHF2	ENST00000359246	human	ensembl	74_37	+1	known	silent	c.2025	p.D675	0.929	NULL	pfam_JmjC_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF2	HGNC	ENSG00000197724				205	0	0	150	25	14.2857
PTPDC1	0	genome.wustl.edu	37	9	96860859	96860859	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	9	96860859	96860859	C	T	SNP	PTPDC1	ENST00000375360	human	ensembl	74_37	+1	known	nonsense	c.1849	p.Q617*	1.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Dual-sp_phosphatase_subgr_cat,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase	-	no_errors	PTPDC1	HGNC	ENSG00000158079				59	0	0	44	30	40.5405
DRP2	0	genome.wustl.edu	37	X	100511132	100511132	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	100511132	100511132	C	G	SNP	DRP2	ENST00000395209	human	ensembl	74_37	+1	known	missense	c.2272	p.H758D	1.000	pirsf_Dystrophin-related_2	pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_Znf_ZZ,pfam_Spectrin_repeat,pfam_WW_dom,superfamily_WW_dom,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin-related_2,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DRP2	HGNC	ENSG00000102385				96	0	0	57	37	39.3617
WWC3	0	genome.wustl.edu	37	X	10106971	10106971	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	10106971	10106971	C	T	SNP	WWC3	ENST00000380861	human	ensembl	74_37	+1	known	missense	c.3079	p.R1027W	0.998	NULL	superfamily_C2_dom	-	no_errors	WWC3	HGNC	ENSG00000047644				12	0	0	7	9	56.25
NXF4	0	genome.wustl.edu	37	X	101826168	101826168	+	RNA	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	101826168	101826168	A	G	SNP	NXF4	ENST00000360035	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.028	-	-	-	no_errors	NXF4	HGNC	ENSG00000196970				32	0	0	12	11	47.8261
BHLHB9	0	genome.wustl.edu	37	X	102004719	102004719	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	102004719	102004719	C	T	SNP	BHLHB9	ENST00000361229	human	ensembl	74_37	+1	known	missense	c.796	p.R266C	0.001	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	BHLHB9	HGNC	ENSG00000198908				118	0	0	81	56	40.8759
GUCY2F	0	genome.wustl.edu	37	X	108718959	108718959	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	108718959	108718959	C	A	SNP	GUCY2F	ENST00000218006	human	ensembl	74_37	-1	known	missense	c.207	p.K69N	1.000	superfamily_Peripla_BP_I	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Haem_no_assoc-bd,superfamily_Peripla_BP_I,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_A/G_cyclase	-	no_errors	GUCY2F	HGNC	ENSG00000101890				96	0	0	107	20	15.748
TRPC5	0	genome.wustl.edu	37	X	111155719	111155719	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	111155719	111155719	C	G	SNP	TRPC5	ENST00000262839	human	ensembl	74_37	-1	known	missense	c.700	p.E234Q	1.000	pfam_TRP_dom,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC5_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC5	HGNC	ENSG00000072315				220	1	0.452489	133	73	35.4369
SLC25A5	0	genome.wustl.edu	37	X	118604463	118604463	+	Silent	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	118604463	118604463	A	G	SNP	SLC25A5	ENST00000317881	human	ensembl	74_37	+1	known	silent	c.726	p.S242	0.492	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier,prints_Aden_trnslctor	-	no_errors	SLC25A5	HGNC	ENSG00000005022				87	0	0	67	4	5.6338
CUL4B	0	genome.wustl.edu	37	X	119669715	119669715	+	Silent	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	119669715	119669715	T	C	SNP	CUL4B	ENST00000404115	human	ensembl	74_37	-1	known	silent	c.2184	p.G728	0.998	pfam_Cullin_N,superfamily_Cullin_homology,smart_Cullin_homology,pfscan_Cullin_homology	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL4B	HGNC	ENSG00000158290				156	0	0	100	77	43.5028
CT47B1	0	genome.wustl.edu	37	X	120009203	120009203	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	120009203	120009203	A	T	SNP	CT47B1	ENST00000371311	human	ensembl	74_37	-1	known	missense	c.322	p.L108M	0.000	NULL	NULL	-	no_errors	CT47B1	HGNC	ENSG00000236446				46	0	0	23	11	32.3529
TENM1	0	genome.wustl.edu	37	X	123517645	123517645	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	123517645	123517645	T	C	SNP	TENM1	ENST00000422452	human	ensembl	74_37	-1	known	missense	c.7136	p.H2379R	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	TENM1	HGNC	ENSG00000009694				130	1	0.763359	74	31	29.5238
TENM1	0	genome.wustl.edu	37	X	123526074	123526074	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	123526074	123526074	C	A	SNP	TENM1	ENST00000422452	human	ensembl	74_37	-1	known	missense	c.5516	p.W1839L	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	TENM1	HGNC	ENSG00000009694				89	0	0	89	14	13.5922
UTP14A	0	genome.wustl.edu	37	X	129055391	129055391	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	129055391	129055391	C	G	SNP	UTP14A	ENST00000394422	human	ensembl	74_37	+1	known	missense	c.1176	p.D392E	0.004	pfam_SSU_processome_Utp14	pfam_SSU_processome_Utp14	-	no_errors	UTP14A	HGNC	ENSG00000156697				105	0	0	68	35	33.9806
IGSF1	0	genome.wustl.edu	37	X	130410940	130410940	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	130410940	130410940	T	C	SNP	IGSF1	ENST00000370903	human	ensembl	74_37	-1	known	missense	c.2596	p.S866G	1.000	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	IGSF1	HGNC	ENSG00000147255				215	1	0.462963	119	67	36.0215
FRMD7	0	genome.wustl.edu	37	X	131216453	131216453	+	Silent	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	131216453	131216453	C	T	SNP	FRMD7	ENST00000298542	human	ensembl	74_37	-1	known	silent	c.843	p.S281	0.016	pfam_FERM_PH-like_C,pfscan_FERM_domain	pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM-adjacent,pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,prints_Band_41_fam,pfscan_FERM_domain	-	no_errors	FRMD7	HGNC	ENSG00000165694				386	0	0	241	128	34.6883
GPR112	0	genome.wustl.edu	37	X	135405357	135405357	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	135405357	135405357	T	C	SNP	GPR112	ENST00000370652	human	ensembl	74_37	+1	known	missense	c.491	p.L164P	0.001	pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920				210	0	0	184	19	9.35961
MAGEC1	0	genome.wustl.edu	37	X	140995628	140995628	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	140995628	140995628	C	A	SNP	MAGEC1	ENST00000285879	human	ensembl	74_37	+1	known	missense	c.2438	p.P813H	0.014	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC1	HGNC	ENSG00000155495				250	0	0	137	84	38.009
PRRG3	0	genome.wustl.edu	37	X	150869254	150869254	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	150869254	150869254	C	T	SNP	PRRG3	ENST00000370353	human	ensembl	74_37	+1	known	nonsense	c.445	p.R149*	0.864	NULL	pfam_GLA_domain,superfamily_GLA_domain,smart_GLA_domain,pfscan_GLA_domain,prints_GLA_domain	-	no_errors	PRRG3	HGNC	ENSG00000130032				51	0	0	28	14	33.3333
CNGA2	0	genome.wustl.edu	37	X	150912578	150912578	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	150912578	150912578	C	T	SNP	CNGA2	ENST00000329903	human	ensembl	74_37	+1	known	nonsense	c.1603	p.R535*	1.000	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA2	HGNC	ENSG00000183862				198	0	0	111	64	36.5714
ATP2B3	0	genome.wustl.edu	37	X	152814984	152814984	+	Silent	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	152814984	152814984	C	T	SNP	ATP2B3	ENST00000263519	human	ensembl	74_37	+1	known	silent	c.1368	p.R456	0.997	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B3	HGNC	ENSG00000067842				158	0	0	103	53	33.9744
DUSP9	0	genome.wustl.edu	37	X	152915040	152915040	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	152915040	152915040	T	G	SNP	DUSP9	ENST00000342782	human	ensembl	74_37	+1	known	missense	c.727	p.F243V	1.000	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pirsf_MKP,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,pirsf_MKP,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP	-	no_errors	DUSP9	HGNC	ENSG00000130829				187	0	0	154	28	15.3846
ASB11	0	genome.wustl.edu	37	X	15307687	15307687	+	Silent	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	15307687	15307687	A	G	SNP	ASB11	ENST00000480796	human	ensembl	74_37	-1	known	silent	c.594	p.T198	0.659	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	-	no_errors	ASB11	HGNC	ENSG00000165192				225	2	0.881057	251	14	5.28302
HCFC1	0	genome.wustl.edu	37	X	153219666	153219666	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	153219666	153219666	G	A	SNP	HCFC1	ENST00000310441	human	ensembl	74_37	-1	known	missense	c.4184	p.A1395V	0.266	NULL	pfam_Kelch_2,pfam_Kelch_1,superfamily_Fibronectin_type3,smart_Fibronectin_type3	-	no_errors	HCFC1	HGNC	ENSG00000172534				38	0	0	14	13	48.1481
EMD	0	genome.wustl.edu	37	X	153609454	153609454	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	153609454	153609454	G	A	SNP	EMD	ENST00000369842	human	ensembl	74_37	+1	known	missense	c.662	p.R221H	0.462	NULL	pfam_LEM_dom,superfamily_LEM/LEM-like_dom,smart_LEM_dom,pfscan_LEM_dom	-	no_errors	EMD	HGNC	ENSG00000102119				58	0	0	37	20	35.0877
SH3KBP1	0	genome.wustl.edu	37	X	19626152	19626152	+	Silent	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	19626152	19626152	G	A	SNP	SH3KBP1	ENST00000397821	human	ensembl	74_37	-1	known	silent	c.909	p.D303	0.010	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain,prints_Spectrin_alpha_SH3	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_p67phox,prints_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SH3KBP1	HGNC	ENSG00000147010				70	0	0	39	38	49.3506
YY2	0	genome.wustl.edu	37	X	21875159	21875159	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	21875159	21875159	C	T	SNP	YY2	ENST00000429584	human	ensembl	74_37	+1	known	missense	c.557	p.T186I	0.029	pirsf_TF_Yin_yang	smart_Znf_C2H2-like,pirsf_TF_Yin_yang,pfscan_Znf_C2H2	-	no_errors	YY2	HGNC	ENSG00000230797				239	0	0	128	106	45.2991
POLA1	0	genome.wustl.edu	37	X	24742543	24742543	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	24742543	24742543	A	G	SNP	POLA1	ENST00000379068	human	ensembl	74_37	+1	known	missense	c.1292	p.Y431C	1.000	pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,tigrfam_DNA-dir_DNA_pol_B_pol2	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_Znf_DNA-dir_DNA_pol_B_alpha,pfam_DNA_pol_a_cat_su_N,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	-	no_errors	POLA1	HGNC	ENSG00000101868				65	0	0	58	5	7.93651
ARSE	0	genome.wustl.edu	37	X	2878425	2878425	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	2878425	2878425	T	C	SNP	ARSE	ENST00000381134	human	ensembl	74_37	-1	known	missense	c.17	p.H6R	0.000	NULL	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSE	HGNC	ENSG00000157399				68	0	0	62	16	20.5128
CXorf22	0	genome.wustl.edu	37	X	35938122	35938122	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	35938122	35938122	G	A	SNP	CXorf22	ENST00000297866	human	ensembl	74_37	+1	known	missense	c.206	p.R69H	0.022	NULL	superfamily_PapD-like	-	no_errors	CXorf22	HGNC	ENSG00000165164				34	0	0	13	15	53.5714
XK	0	genome.wustl.edu	37	X	37553709	37553709	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	37553709	37553709	C	T	SNP	XK	ENST00000378616	human	ensembl	74_37	+1	known	missense	c.416	p.A139V	1.000	pfam_Transport_prot_XK	pfam_Transport_prot_XK	-	no_errors	XK	HGNC	ENSG00000047597				18	0	0	12	5	29.4118
DUSP21	0	genome.wustl.edu	37	X	44703932	44703932	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	44703932	44703932	G	A	SNP	DUSP21	ENST00000339042	human	ensembl	74_37	+1	known	missense	c.554	p.R185H	0.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP_famB,prints_Atypical_DUSP	-	no_errors	DUSP21	HGNC	ENSG00000189037				75	0	0	40	20	33.3333
SLC9A7	0	genome.wustl.edu	37	X	46508175	46508175	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	46508175	46508175	A	C	SNP	SLC9A7	ENST00000328306	human	ensembl	74_37	-1	known	missense	c.1405	p.L469V	0.991	pfam_Cation/H_exchanger,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_Na/H_exchanger_6,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A7	HGNC	ENSG00000065923				67	0	0	41	35	46.0526
ZNF41	0	genome.wustl.edu	37	X	47308161	47308161	+	Silent	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	47308161	47308161	A	G	SNP	ZNF41	ENST00000397050	human	ensembl	74_37	-1	known	silent	c.1038	p.F346	0.920	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF41	HGNC	ENSG00000147124				113	0	0	71	33	31.7308
WDR13	0	genome.wustl.edu	37	X	48458724	48458724	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	48458724	48458724	G	A	SNP	WDR13	ENST00000218056	human	ensembl	74_37	+1	known	missense	c.541	p.A181T	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR13	HGNC	ENSG00000101940				57	0	0	24	27	52.9412
AKAP4	0	genome.wustl.edu	37	X	49957256	49957256	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	49957256	49957256	G	A	SNP	AKAP4	ENST00000358526	human	ensembl	74_37	-1	known	missense	c.2108	p.S703F	1.000	pfam_AKAP_110_C,smart_AKAP_110	pfam_AKAP_110_C,pfam_RII_binding_1,smart_AKAP_110	-	no_errors	AKAP4	HGNC	ENSG00000147081				83	0	0	53	31	36.9048
AKAP4	0	genome.wustl.edu	37	X	49958092	49958092	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	49958092	49958092	C	A	SNP	AKAP4	ENST00000358526	human	ensembl	74_37	-1	known	missense	c.1272	p.E424D	0.968	pfam_AKAP_110_C,smart_AKAP_110	pfam_AKAP_110_C,pfam_RII_binding_1,smart_AKAP_110	-	no_errors	AKAP4	HGNC	ENSG00000147081				155	0	0	92	56	37.8378
XAGE3	0	genome.wustl.edu	37	X	52893814	52893814	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	52893814	52893814	C	T	SNP	XAGE3	ENST00000346279	human	ensembl	74_37	-1	known	missense	c.303	p.M101I	0.009	pfam_GAGE	pfam_GAGE	-	no_errors	XAGE3	HGNC	ENSG00000171402				99	0	0	46	51	52.5773
GNL3L	0	genome.wustl.edu	37	X	54559016	54559016	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	54559016	54559016	A	G	SNP	GNL3L	ENST00000336470	human	ensembl	74_37	+1	known	missense	c.17	p.H6R	0.995	NULL	pfam_GTP_binding_domain,pfam_Fe2_transport_prot_B_N,superfamily_P-loop_NTPase,prints_GTP_binding_domain	-	no_errors	GNL3L	HGNC	ENSG00000130119				151	0	0	87	57	39.5833
AMER1	0	genome.wustl.edu	37	X	63411827	63411827	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	63411827	63411827	C	A	SNP	AMER1	ENST00000330258	human	ensembl	74_37	-1	known	missense	c.1340	p.G447V	0.021	pfam_Uncharacterised_FAM123	pfam_Uncharacterised_FAM123	-	no_errors	AMER1	HGNC	ENSG00000184675				52	0	0	39	24	38.0952
FOXO4	0	genome.wustl.edu	37	X	70320655	70320655	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	70320655	70320655	G	A	SNP	FOXO4	ENST00000374259	human	ensembl	74_37	+1	known	missense	c.575	p.R192H	1.000	pfscan_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXO4	HGNC	ENSG00000184481				16	0	0	9	9	50
ACRC	0	genome.wustl.edu	37	X	70824105	70824105	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	70824105	70824105	T	A	SNP	ACRC	ENST00000373695	human	ensembl	74_37	+1	known	missense	c.978	p.D326E	0.000	NULL	pfam_SprT-like_domain,smart_SprT-like_domain	-	no_errors	ACRC	HGNC	ENSG00000147174				232	0	0	132	91	40.8072
ACRC	0	genome.wustl.edu	37	X	70824111	70824111	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	70824111	70824111	T	G	SNP	ACRC	ENST00000373695	human	ensembl	74_37	+1	known	missense	c.984	p.N328K	0.000	NULL	pfam_SprT-like_domain,smart_SprT-like_domain	-	no_errors	ACRC	HGNC	ENSG00000147174				215	0	0	124	81	39.5122
XIST	0	genome.wustl.edu	37	X	73062930	73062930	+	RNA	SNP	C	C	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	73062930	73062930	C	T	SNP	XIST	ENST00000429829	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	XIST	HGNC	ENSG00000229807				55	0	0	34	27	44.2623
XIST	0	genome.wustl.edu	37	X	73071272	73071272	+	RNA	SNP	G	G	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	73071272	73071272	G	T	SNP	XIST	ENST00000429829	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	XIST	HGNC	ENSG00000229807				262	0	0	153	95	38.3065
KIAA2022	0	genome.wustl.edu	37	X	73959959	73959959	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	73959959	73959959	C	A	SNP	KIAA2022	ENST00000055682	human	ensembl	74_37	-1	known	missense	c.4433	p.G1478V	1.000	NULL	NULL	-	no_errors	KIAA2022	HGNC	ENSG00000050030				77	0	0	52	22	29.7297
P2RY10	0	genome.wustl.edu	37	X	78216820	78216820	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	78216820	78216820	T	C	SNP	P2RY10	ENST00000171757	human	ensembl	74_37	+1	known	missense	c.803	p.M268T	0.997	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	P2RY10	HGNC	ENSG00000078589				162	0	0	154	9	5.52147
POU3F4	0	genome.wustl.edu	37	X	82764202	82764202	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	82764202	82764202	G	T	SNP	POU3F4	ENST00000373200	human	ensembl	74_37	+1	known	missense	c.870	p.K290N	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pirsf_Transcription_factor_POU,pfscan_Homeobox_dom,prints_POU	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pirsf_Transcription_factor_POU,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU	-	no_errors	POU3F4	HGNC	ENSG00000196767				39	0	0	23	19	45.2381
KAL1	0	genome.wustl.edu	37	X	8555928	8555928	+	Silent	SNP	A	A	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	8555928	8555928	A	C	SNP	KAL1	ENST00000262648	human	ensembl	74_37	-1	known	silent	c.633	p.S211	0.856	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_WAP-type_4-diS_core,superfamily_Fibronectin_type3,superfamily_WAP-type_4-diS_core,smart_WAP-type_4-diS_core,smart_Fibronectin_type3,pfscan_Fibronectin_type3,prints_WAP-type_4-diS_core	-	no_errors	KAL1	HGNC	ENSG00000011201				26	0	0	24	9	27.2727
KAL1	0	genome.wustl.edu	37	X	8555953	8555953	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	8555953	8555953	T	G	SNP	KAL1	ENST00000262648	human	ensembl	74_37	-1	known	missense	c.608	p.K203T	0.592	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_WAP-type_4-diS_core,superfamily_Fibronectin_type3,superfamily_WAP-type_4-diS_core,smart_WAP-type_4-diS_core,smart_Fibronectin_type3,pfscan_Fibronectin_type3,prints_WAP-type_4-diS_core	-	no_errors	KAL1	HGNC	ENSG00000011201				27	0	0	30	8	21.0526
DACH2	0	genome.wustl.edu	37	X	85950100	85950100	+	Silent	SNP	T	T	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	85950100	85950100	T	G	SNP	DACH2	ENST00000373125	human	ensembl	74_37	+1	known	silent	c.849	p.A283	0.998	NULL	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	-	no_errors	DACH2	HGNC	ENSG00000126733				33	0	0	24	14	36.8421
TGIF2LX	0	genome.wustl.edu	37	X	89177518	89177518	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	89177518	89177518	A	C	SNP	TGIF2LX	ENST00000283891	human	ensembl	74_37	+1	known	missense	c.434	p.K145T	0.000	NULL	pfam_Homeobox_dom,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	TGIF2LX	HGNC	ENSG00000153779				67	0	0	34	36	51.4286
DIAPH2	0	genome.wustl.edu	37	X	96502819	96502819	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	96502819	96502819	A	C	SNP	DIAPH2	ENST00000324765	human	ensembl	74_37	+1	known	missense	c.2825	p.K942T	1.000	pfam_FH2_Formin,smart_FH2_Formin	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,pfam_Drf_DAD,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	DIAPH2	HGNC	ENSG00000147202				121	0	0	127	10	7.29927
UBE4B	0	genome.wustl.edu	37	1	10177642	10177642	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	10177642	10177642	A	-	DEL	UBE4B	ENST00000343090	human	ensembl	74_37	+1	known	frame_shift_del	c.1322	p.A444fs	1.000	NULL	pfam_Ub_conjug_fac_E4_core,pfam_Ubox_domain,smart_Ubox_domain	-	no_errors	UBE4B	HGNC	ENSG00000130939				35	0	0	42	18	30
BCL9	0	genome.wustl.edu	37	1	147087679	147087680	+	Frame_Shift_Del	DEL	AC	AC	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	147087679	147087680	AC	-	DEL	BCL9	ENST00000234739	human	ensembl	74_37	+1	known	frame_shift_del	c.637_638	p.T213fs	1.000:1.000	NULL	pfam_BCL9_beta-catenin-bd_dom	-	no_errors	BCL9	HGNC	ENSG00000116128				85	0	0	46	21	31.3433
ASH1L	0	genome.wustl.edu	37	1	155308000	155308000	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	155308000	155308000	T	-	DEL	ASH1L	ENST00000368346	human	ensembl	74_37	-1	known	frame_shift_del	c.8698	p.T2900fs	0.002	NULL	pfam_SET_dom,pfam_BAH_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_AT_hook_DNA-bd_motif,smart_AWS,smart_SET_dom,smart_Bromodomain,smart_Znf_PHD,smart_BAH_dom,pfscan_AWS,pfscan_BAH_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Bromodomain	-	no_errors	ASH1L	HGNC	ENSG00000116539				147	0	0	90	36	28.5714
IGSF9	0	genome.wustl.edu	37	1	159900128	159900128	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	159900128	159900128	C	-	DEL	IGSF9	ENST00000368094	human	ensembl	74_37	-1	known	frame_shift_del	c.1915	p.V639fs	0.999	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	IGSF9	HGNC	ENSG00000085552				77	0	0	61	24	28.2353
SHCBP1L	0	genome.wustl.edu	37	1	182908681	182908681	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	182908681	182908681	A	-	DEL	SHCBP1L	ENST00000367547	human	ensembl	74_37	-1	known	frame_shift_del	c.778	p.Y260fs	1.000	NULL	superfamily_Pectin_lyase_fold/virulence,smart_Carb-bd_sugar_hydrolysis-dom,smart_PbH1	-	no_errors	SHCBP1L	HGNC	ENSG00000157060				21	0	0	12	10	45.4545
CAMSAP2	0	genome.wustl.edu	37	1	200822407	200822407	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	200822407	200822407	A	-	DEL	CAMSAP2	ENST00000236925	human	ensembl	74_37	+1	known	frame_shift_del	c.3640	p.T1215fs	1.000	NULL	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrel-like,superfamily_CH-domain	-	no_errors	CAMSAP2	HGNC	ENSG00000118200				143	0	0	125	56	30.9392
PFKFB2	0	genome.wustl.edu	37	1	207241005	207241006	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	207241005	207241006	-	G	INS	PFKFB2	ENST00000367080	human	ensembl	74_37	+1	known	frame_shift_ins	c.794_795	p.K267fs	0.739:0.739	pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1,pirsf_Bifunct_6PFK/fruc_bisP_Ptase,prints_6Pfruct_kin	pfam_6Phosfructo_kin,pfam_His_Pase_superF_clade-1,pfam_Chromatin_KTI12,superfamily_P-loop_NTPase,smart_His_Pase_superF_clade-1,pirsf_Bifunct_6PFK/fruc_bisP_Ptase,prints_6Pfruct_kin	-	no_errors	PFKFB2	HGNC	ENSG00000123836				121	0	0	105	18	14.6341
SPRTN	0	genome.wustl.edu	37	1	231488893	231488894	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	231488893	231488894	-	T	INS	SPRTN	ENST00000295050	human	ensembl	74_37	+1	known	frame_shift_ins	c.1256_1257	p.I422fs	0.000:0.000	NULL	pfam_SprT-like_domain,smart_SprT-like_domain,smart_Znf_Rad18_put	-	no_errors	SPRTN	HGNC	ENSG00000010072				90	0	0	62	18	22.5
GGPS1	0	genome.wustl.edu	37	1	235505913	235505913	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	235505913	235505913	A	-	DEL	GGPS1	ENST00000282841	human	ensembl	74_37	+1	known	frame_shift_del	c.729	p.K245fs	1.000	pfam_Polyprenyl_synt,superfamily_Terpenoid_synth	pfam_Polyprenyl_synt,superfamily_Terpenoid_synth	-	no_errors	GGPS1	HGNC	ENSG00000152904				63	0	0	46	33	41.7722
CHRM3	0	genome.wustl.edu	37	1	240072444	240072444	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	240072444	240072444	A	-	DEL	CHRM3	ENST00000255380	human	ensembl	74_37	+1	known	frame_shift_del	c.1693	p.K567fs	1.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Musac_Ach_M3_rcpt,prints_Musac_Ach_rcpt,prints_GPCR_Rhodpsn	-	no_errors	CHRM3	HGNC	ENSG00000133019				43	0	0	66	9	12
OR2W3	0	genome.wustl.edu	37	1	248059733	248059733	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	248059733	248059733	C	-	DEL	OR2W3	ENST00000360358	human	ensembl	74_37	+1	known	frame_shift_del	c.845	p.L284fs	0.057	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2W3	HGNC	ENSG00000238243				59	0	0	43	13	23.2143
RAB42	0	genome.wustl.edu	37	1	28920547	28920547	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	28920547	28920547	G	-	DEL	RAB42	ENST00000373826	human	ensembl	74_37	+1	known	frame_shift_del	c.236	p.G81fs	1.000	superfamily_P-loop_NTPase	pfam_Small_GTPase,superfamily_P-loop_NTPase,smart_Small_GTPase_Rab_type,prints_Small_GTPase	-	no_errors	RAB42	HGNC	ENSG00000188060				26	0	0	39	5	11.3636
COL16A1	0	genome.wustl.edu	37	1	32119201	32119202	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	32119201	32119202	-	G	INS	COL16A1	ENST00000271069	human	ensembl	74_37	-1	known	frame_shift_ins	c.4611_4610	p.G1538fs	1.000:1.000	pfam_Collagen	pfam_Collagen,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	-	no_errors	COL16A1	HGNC	ENSG00000084636				46	0	0	22	8	26.6667
PRDM16	0	genome.wustl.edu	37	1	3328152	3328152	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	3328152	3328152	C	-	DEL	PRDM16	ENST00000270722	human	ensembl	74_37	+1	known	frame_shift_del	c.1391	p.S466fs	1.000	NULL	pfam_Znf_C2H2,pfam_Znf_BED_prd,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM16	HGNC	ENSG00000142611				71	0	0	44	24	35.2941
TIE1	0	genome.wustl.edu	37	1	43772910	43772910	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	43772910	43772910	C	-	DEL	TIE1	ENST00000372476	human	ensembl	74_37	+1	known	frame_shift_del	c.738	p.P248fs	0.382	smart_EG-like_dom,pfscan_EG-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_EG-like_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TIE1	HGNC	ENSG00000066056				31	0	0	50	15	23.0769
FGGY	0	genome.wustl.edu	37	1	59812016	59812017	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	59812016	59812017	-	G	INS	FGGY	ENST00000303721	human	ensembl	74_37	+1	known	frame_shift_ins	c.411_412	p.V139fs	0.394:0.997	pfam_Carb_kinase_FGGY_N,tigrfam_Carb_kinase_FGGY-rel	pfam_Carb_kinase_FGGY_C,pfam_Carb_kinase_FGGY_N,tigrfam_Carb_kinase_FGGY-rel	-	no_errors	FGGY	HGNC	ENSG00000172456				78	0	0	59	11	15.7143
RPL22	0	genome.wustl.edu	37	1	6257785	6257785	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	6257785	6257785	T	-	DEL	RPL22	ENST00000234875	human	ensembl	74_37	-1	known	frame_shift_del	c.44	p.K15fs	1.000	pfam_Ribosomal_L22e	pfam_Ribosomal_L22e	-	no_errors	RPL22	HGNC	ENSG00000116251				32	0	0	28	22	44
ATG4C	0	genome.wustl.edu	37	1	63284744	63284744	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	63284744	63284744	A	-	DEL	ATG4C	ENST00000317868	human	ensembl	74_37	+1	known	frame_shift_del	c.463	p.K156fs	0.991	pfam_Peptidase_C54	pfam_Peptidase_C54	-	no_errors	ATG4C	HGNC	ENSG00000125703				99	0	0	76	27	26.2136
ENSG00000223231	0	genome.wustl.edu	37	1	84259638	84259638	+	RNA	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	84259638	84259638	A	-	DEL	ENSG00000223231	ENST00000411299	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.062	-	-	-	no_errors	AL035706.1	Clone_based_ensembl_gene	ENSG00000223231				9	0	0	3	3	50
CLCA4	0	genome.wustl.edu	37	1	87031503	87031504	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	87031503	87031504	-	A	INS	CLCA4	ENST00000370563	human	ensembl	74_37	+1	known	frame_shift_ins	c.754_755	p.T254fs	0.001:0.000	pfam_Cl_channel_Ca,tigrfam_CaCC_prot	pfam_Cl_channel_Ca,pfam_DUF1973,pfam_VWF_A,superfamily_Fibronectin_type3,smart_VWF_A,pfscan_VWF_A,tigrfam_CaCC_prot	-	no_errors	CLCA4	HGNC	ENSG00000016602				58	0	0	34	19	35.8491
PKN2	0	genome.wustl.edu	37	1	89206848	89206848	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	89206848	89206848	A	-	DEL	PKN2	ENST00000370521	human	ensembl	74_37	+1	known	frame_shift_del	c.226	p.S78fs	1.000	pfam_HR1_rho-bd,superfamily_HR1_rho-bd,smart_HR1_rho-bd	pfam_Prot_kinase_dom,pfam_HR1_rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,superfamily_C2_dom,smart_HR1_rho-bd,smart_C2_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom	-	no_errors	PKN2	HGNC	ENSG00000065243				55	0	0	32	16	33.3333
ARHGAP29	0	genome.wustl.edu	37	1	94668131	94668131	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	1	94668131	94668131	T	-	DEL	ARHGAP29	ENST00000260526	human	ensembl	74_37	-1	known	frame_shift_del	c.1112	p.K371fs	1.000	NULL	pfam_RhoGAP_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Rho_GTPase_activation_prot,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	ARHGAP29	HGNC	ENSG00000137962				99	0	0	85	42	33.0709
SORCS1	0	genome.wustl.edu	37	10	108536340	108536340	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	10	108536340	108536340	A	-	DEL	SORCS1	ENST00000344440	human	ensembl	74_37	-1	known	frame_shift_del	c.837	p.H280fs	1.000	smart_VPS10	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS1	HGNC	ENSG00000108018				121	0	0	86	24	21.8182
ADD3	0	genome.wustl.edu	37	10	111893350	111893350	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	10	111893350	111893350	A	-	DEL	ADD3	ENST00000356080	human	ensembl	74_37	+1	known	frame_shift_del	c.2095	p.K701fs	1.000	NULL	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	-	no_errors	ADD3	HGNC	ENSG00000148700				150	0	0	124	41	24.8485
IKZF5	0	genome.wustl.edu	37	10	124758127	124758127	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	10	124758127	124758127	T	-	DEL	IKZF5	ENST00000368886	human	ensembl	74_37	-1	known	frame_shift_del	c.15	p.K5fs	0.996	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	IKZF5	HGNC	ENSG00000095574				67	0	0	68	7	9.33333
C10orf137	0	genome.wustl.edu	37	10	127434314	127434314	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	10	127434314	127434314	A	-	DEL	C10orf137	ENST00000356792	human	ensembl	74_37	+1	known	frame_shift_del	c.2629	p.S879fs	1.000	NULL	NULL	-	no_errors	C10orf137	HGNC	ENSG00000107938				83	0	0	84	30	26.3158
LRRC27	0	genome.wustl.edu	37	10	134188696	134188696	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	10	134188696	134188696	T	-	DEL	LRRC27	ENST00000368613	human	ensembl	74_37	+1	known	frame_shift_del	c.1543	p.F516fs	0.960	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC27	HGNC	ENSG00000148814				43	0	0	31	16	34.0426
RUFY2	0	genome.wustl.edu	37	10	70156583	70156583	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	10	70156583	70156583	T	-	DEL	RUFY2	ENST00000388768	human	ensembl	74_37	-1	known	frame_shift_del	c.457	p.M153fs	0.996	pfam_Run,smart_Run,pfscan_Run	pfam_Run,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Run,smart_Znf_FYVE,pfscan_Run,pfscan_Znf_FYVE-rel	-	no_errors	RUFY2	HGNC	ENSG00000204130				82	0	0	83	5	5.68182
HTR7	0	genome.wustl.edu	37	10	92502287	92502288	+	Splice_Site	INS	-	-	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	10	92502287	92502288	-	A	INS	HTR7	ENST00000336152	human	ensembl	74_37	-1	known	splice_site_ins	c.1394-3_1394-2	e4-2	0.999:0.019	-	-	-	no_errors	HTR7	HGNC	ENSG00000148680				40	0	0	55	5	8.33333
CWF19L2	0	genome.wustl.edu	37	11	107207381	107207381	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	11	107207381	107207381	A	-	DEL	CWF19L2	ENST00000282251	human	ensembl	74_37	-1	known	frame_shift_del	c.2261	p.L754fs	1.000	pfam_Cwf19-like_C_dom-1,superfamily_HIT-like	pfam_Cwf19-like_C_dom-1,pfam_Cwf19-like_C_dom-2,superfamily_HIT-like	-	no_errors	CWF19L2	HGNC	ENSG00000152404				21	0	0	12	6	33.3333
BCL9L	0	genome.wustl.edu	37	11	118769560	118769560	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	11	118769560	118769560	G	-	DEL	BCL9L	ENST00000334801	human	ensembl	74_37	-1	known	frame_shift_del	c.4064	p.P1355fs	1.000	NULL	pfam_BCL9_beta-catenin-bd_dom	-	no_errors	BCL9L	HGNC	ENSG00000186174				51	0	0	47	21	30.8824
SOX6	0	genome.wustl.edu	37	11	16119182	16119184	+	In_Frame_Del	DEL	AGC	AGC	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	AGC	AGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	11	16119182	16119184	AGC	-	DEL	SOX6	ENST00000352083	human	ensembl	74_37	-1	known	in_frame_del	c.951_949	p.A317in_frame_del	1.000:1.000:1.000	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX6	HGNC	ENSG00000110693				74	0	0	40	20	33.3333
KCNA4	0	genome.wustl.edu	37	11	30032940	30032940	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	11	30032940	30032940	C	-	DEL	KCNA4	ENST00000328224	human	ensembl	74_37	-1	known	frame_shift_del	c.1286	p.G429fs	1.000	pfam_Ion_trans_dom	pfam_K_chnl_volt-dep_Kv1.4_TID,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.4,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA4	HGNC	ENSG00000182255				76	0	0	61	20	24.6914
ARL14EP	0	genome.wustl.edu	37	11	30352754	30352754	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	11	30352754	30352754	A	-	DEL	ARL14EP	ENST00000282032	human	ensembl	74_37	+1	known	frame_shift_del	c.259	p.N89fs	1.000	NULL	NULL	-	no_errors	ARL14EP	HGNC	ENSG00000152219				101	0	0	93	43	31.6176
PAMR1	0	genome.wustl.edu	37	11	35513670	35513670	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	11	35513670	35513670	C	-	DEL	PAMR1	ENST00000278360	human	ensembl	74_37	-1	known	frame_shift_del	c.302	p.G101fs	0.999	smart_EG-like_dom	pfam_Peptidase_S1,pfam_CUB_dom,pfam_Sushi_SCR_CCP,pfam_EG-like_dom,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_EG-like_dom,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_Sushi_SCR_CCP,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_CUB_dom,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1	-	no_errors	PAMR1	HGNC	ENSG00000149090				360	0	0	269	121	31.0256
ART1	0	genome.wustl.edu	37	11	3681478	3681478	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	11	3681478	3681478	C	-	DEL	ART1	ENST00000250693	human	ensembl	74_37	+1	known	frame_shift_del	c.729	p.F246fs	0.999	pfam_ART,prints_ART	pfam_ART,prints_ART	-	no_errors	ART1	HGNC	ENSG00000129744				45	0	0	39	29	42.6471
LOC440040	0	genome.wustl.edu	37	11	49831959	49831959	+	RNA	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	11	49831959	49831959	A	-	DEL	LOC440040	ENST00000527477	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.803	-	-	-	no_errors	RP11-707M1.1	Clone_based_vega_gene	ENSG00000205035				24	0	0	10	6	37.5
ROM1	0	genome.wustl.edu	37	11	62382265	62382265	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	11	62382265	62382265	C	-	DEL	ROM1	ENST00000278833	human	ensembl	74_37	+1	known	frame_shift_del	c.1010	p.P338fs	0.647	NULL	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Peripherin/rom-1	-	no_errors	ROM1	HGNC	ENSG00000149489				41	0	0	38	20	34.4828
MALAT1	0	genome.wustl.edu	37	11	65272638	65272639	+	RNA	INS	-	-	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	11	65272638	65272639	-	T	INS	MALAT1	ENST00000534336	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000:1.000	-	-	-	no_errors	MALAT1	HGNC	ENSG00000251562				50	0	0	45	11	19.6429
TUB	0	genome.wustl.edu	37	11	8118863	8118863	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	11	8118863	8118863	C	-	DEL	TUB	ENST00000305253	human	ensembl	74_37	+1	known	frame_shift_del	c.941	p.Q316fs	0.999	pfam_Tubby_C,superfamily_Tubby_C-like	pfam_Tubby_C,superfamily_Tubby_C-like,prints_Tubby_N,prints_Tubby_C	-	no_errors	TUB	HGNC	ENSG00000166402				93	0	0	64	25	28.0899
SYTL2	0	genome.wustl.edu	37	11	85437306	85437306	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	11	85437306	85437306	T	-	DEL	SYTL2	ENST00000359152	human	ensembl	74_37	-1	known	frame_shift_del	c.1766	p.N589fs	0.028	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	SYTL2	HGNC	ENSG00000137501				104	0	0	67	30	30.9278
TCHP	0	genome.wustl.edu	37	12	110344435	110344435	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	12	110344435	110344435	A	-	DEL	TCHP	ENST00000312777	human	ensembl	74_37	+1	known	frame_shift_del	c.515	p.K174fs	1.000	NULL	NULL	-	no_errors	TCHP	HGNC	ENSG00000139437				62	0	0	82	14	14.5833
SBNO1	0	genome.wustl.edu	37	12	123794283	123794283	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	12	123794283	123794283	T	-	DEL	SBNO1	ENST00000420886	human	ensembl	74_37	-1	known	frame_shift_del	c.3416	p.N1139fs	1.000	NULL	pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Prismane-like	-	no_errors	SBNO1	HGNC	ENSG00000139697				143	0	0	115	52	31.1377
IAPP	0	genome.wustl.edu	37	12	21531328	21531329	+	Frame_Shift_Ins	INS	-	-	AG			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	12	21531328	21531329	-	AG	INS	IAPP	ENST00000240652	human	ensembl	74_37	+1	known	frame_shift_ins	c.238_239	p.P83fs	0.296:0.305	NULL	pfam_Procalcitonin/adrenomedullin,smart_Calcitonin_peptide-like,prints_Pro-islet_amyloid_polypep	-	no_errors	IAPP	HGNC	ENSG00000121351				112	0	0	87	16	15.534
ABCC9	0	genome.wustl.edu	37	12	22068696	22068696	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	12	22068696	22068696	T	-	DEL	ABCC9	ENST00000261200	human	ensembl	74_37	-1	known	frame_shift_del	c.722	p.K241fs	1.000	NULL	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_Sulphorea_rcpt,prints_Sulphonylurea_rcpt-2	-	no_errors	ABCC9	HGNC	ENSG00000069431				90	0	0	69	33	32.3529
HDAC7	0	genome.wustl.edu	37	12	48181527	48181527	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	12	48181527	48181527	G	-	DEL	HDAC7	ENST00000380610	human	ensembl	74_37	-1	known	frame_shift_del	c.2472	p.M825fs	0.995	pfam_His_deacetylse_dom,pirsf_Histone_deAcase_II_euk	pfam_His_deacetylse_dom,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC7	HGNC	ENSG00000061273				15	0	0	17	4	19.0476
TENC1	0	genome.wustl.edu	37	12	53452903	53452903	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	12	53452903	53452903	C	-	DEL	TENC1	ENST00000314276	human	ensembl	74_37	+1	known	frame_shift_del	c.1508	p.P505fs	0.202	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH2,smart_PTB/PI_dom,pfscan_SH2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TENC1	HGNC	ENSG00000111077				34	0	0	26	6	18.75
BEST3	0	genome.wustl.edu	37	12	70049361	70049362	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	12	70049361	70049362	-	G	INS	BEST3	ENST00000330891	human	ensembl	74_37	-1	known	frame_shift_ins	c.1333_1332	p.R444fs	0.001:0.001	NULL	pfam_Bestrophin/UPF0187	-	no_errors	BEST3	HGNC	ENSG00000127325				66	0	0	51	26	33.7662
ATN1	0	genome.wustl.edu	37	12	7045189	7045189	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	12	7045189	7045189	C	-	DEL	ATN1	ENST00000356654	human	ensembl	74_37	+1	known	frame_shift_del	c.759	p.P255fs	1.000	NULL	pfam_Atrophin-like,prints_Atrophin-1	-	no_errors	ATN1	HGNC	ENSG00000111676				42	0	0	20	16	44.4444
CEP290	0	genome.wustl.edu	37	12	88512305	88512305	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	12	88512305	88512305	T	-	DEL	CEP290	ENST00000309041	human	ensembl	74_37	-1	known	frame_shift_del	c.1672	p.I558fs	0.983	NULL	NULL	-	no_errors	CEP290	HGNC	ENSG00000198707				18	0	0	10	5	33.3333
PZP	0	genome.wustl.edu	37	12	9321561	9321565	+	Frame_Shift_Del	DEL	ATCCC	ATCCC	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	ATCCC	ATCCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	12	9321561	9321565	ATCCC	-	DEL	PZP	ENST00000261336	human	ensembl	74_37	-1	known	frame_shift_del	c.2011_2007	p.M669fs	0.004:0.003:0.880:0.928:0.925	NULL	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_SV_autoAg,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	PZP	HGNC	ENSG00000126838				71	0	0	52	11	17.4603
CCDC168	0	genome.wustl.edu	37	13	103381996	103381996	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	13	103381996	103381996	A	-	DEL	CCDC168	ENST00000322527	human	ensembl	74_37	-1	known	frame_shift_del	c.7164	p.F2388fs	0.998	NULL	NULL	-	no_errors	CCDC168	HGNC	ENSG00000175820				12	0	0	20	7	25.9259
COL4A2	0	genome.wustl.edu	37	13	111156324	111156324	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	13	111156324	111156324	C	-	DEL	COL4A2	ENST00000360467	human	ensembl	74_37	+1	known	frame_shift_del	c.4269	p.G1426fs	0.956	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A2	HGNC	ENSG00000134871				26	0	0	31	8	20.5128
TMCO3	0	genome.wustl.edu	37	13	114201627	114201628	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	13	114201627	114201628	-	C	INS	TMCO3	ENST00000434316	human	ensembl	74_37	+1	known	frame_shift_ins	c.1703_1704	p.T570fs	1.000:1.000	pfam_Cation/H_exchanger	pfam_Cation/H_exchanger	-	no_errors	TMCO3	HGNC	ENSG00000150403				74	0	0	73	22	23.1579
UPF3A	0	genome.wustl.edu	37	13	115057211	115057211	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	13	115057211	115057211	A	-	DEL	UPF3A	ENST00000375299	human	ensembl	74_37	+1	known	frame_shift_del	c.790	p.E267fs	0.943	NULL	pfam_Nonsense_mediated_decay_UPF3	-	no_errors	UPF3A	HGNC	ENSG00000169062				26	0	0	23	12	34.2857
RNF6	0	genome.wustl.edu	37	13	26788240	26788241	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	13	26788240	26788241	-	A	INS	RNF6	ENST00000346166	human	ensembl	74_37	-1	known	frame_shift_ins	c.1779_1778	p.L593fs	0.999:1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF6	HGNC	ENSG00000127870				125	0	0	166	32	16.1616
FRY	0	genome.wustl.edu	37	13	32821607	32821607	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	13	32821607	32821607	A	-	DEL	FRY	ENST00000380250	human	ensembl	74_37	+1	known	frame_shift_del	c.6976	p.T2327fs	0.999	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FRY	HGNC	ENSG00000073910				87	0	0	93	29	23.7705
RFC3	0	genome.wustl.edu	37	13	34398063	34398063	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	13	34398063	34398063	A	-	DEL	RFC3	ENST00000380071	human	ensembl	74_37	+1	known	frame_shift_del	c.235	p.I82fs	1.000	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,superfamily_DNA_pol3_clamp-load_cplx_C,smart_AAA+_ATPase	-	no_errors	RFC3	HGNC	ENSG00000133119				16	0	0	27	5	15.625
PCDH8	0	genome.wustl.edu	37	13	53422549	53422549	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	13	53422549	53422549	C	-	DEL	PCDH8	ENST00000377942	human	ensembl	74_37	-1	known	frame_shift_del	c.23	p.G8fs	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH8	HGNC	ENSG00000136099				38	0	0	52	10	16.129
PCDH17	0	genome.wustl.edu	37	13	58208750	58208750	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	13	58208750	58208750	G	-	DEL	PCDH17	ENST00000377918	human	ensembl	74_37	+1	known	frame_shift_del	c.2070	p.V692fs	0.977	pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH17	HGNC	ENSG00000118946				89	0	0	98	19	16.2393
PLD4	0	genome.wustl.edu	37	14	105397187	105397187	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	14	105397187	105397187	A	-	DEL	PLD4	ENST00000392593	human	ensembl	74_37	+1	known	frame_shift_del	c.826	p.T277fs	0.024	NULL	pfam_PLipase_D/transphosphatidylase,smart_PLipase_D/transphosphatidylase,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD4	HGNC	ENSG00000166428				134	0	0	142	10	6.57895
LRP10	0	genome.wustl.edu	37	14	23341527	23341529	+	In_Frame_Del	DEL	CCT	CCT	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	CCT	CCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	14	23341527	23341529	CCT	-	DEL	LRP10	ENST00000359591	human	ensembl	74_37	+1	known	in_frame_del	c.15_17	p.L9in_frame_del	0.719:0.834:0.924	NULL	pfam_LDrepeatLR_classA_rpt,pfam_CUB_dom,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP10	HGNC	ENSG00000197324				52	0	0	58	15	20.5479
CDH24	0	genome.wustl.edu	37	14	23523785	23523785	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	14	23523785	23523785	C	-	DEL	CDH24	ENST00000267383	human	ensembl	74_37	-1	known	frame_shift_del	c.714	p.L239fs	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH24	HGNC	ENSG00000139880				48	0	0	35	22	38.5965
INSM2	0	genome.wustl.edu	37	14	36005056	36005057	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	14	36005056	36005057	-	T	INS	INSM2	ENST00000307169	human	ensembl	74_37	+1	known	frame_shift_ins	c.1598_1599	p.S536fs	1.000:0.624	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	INSM2	HGNC	ENSG00000168348				40	0	0	24	16	40
KLHL28	0	genome.wustl.edu	37	14	45414534	45414534	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	14	45414534	45414534	A	-	DEL	KLHL28	ENST00000396128	human	ensembl	74_37	-1	known	frame_shift_del	c.598	p.Y200fs	1.000	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL28	HGNC	ENSG00000179454				96	0	0	72	26	26.5306
SYNE2	0	genome.wustl.edu	37	14	64655326	64655326	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	14	64655326	64655326	A	-	DEL	SYNE2	ENST00000358025	human	ensembl	74_37	+1	known	frame_shift_del	c.17771	p.N5926fs	1.000	smart_Spectrin/alpha-actinin	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654				91	0	0	75	23	23.4694
ELMSAN1	0	genome.wustl.edu	37	14	74186016	74186016	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	14	74186016	74186016	T	-	DEL	ELMSAN1	ENST00000286523	human	ensembl	74_37	-1	known	frame_shift_del	c.3126	p.K1042fs	0.978	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	ELMSAN1	HGNC	ENSG00000156030				25	0	0	21	6	22.2222
FAM181A	0	genome.wustl.edu	37	14	94395475	94395475	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	14	94395475	94395475	C	-	DEL	FAM181A	ENST00000267594	human	ensembl	74_37	+1	known	frame_shift_del	c.1030	p.P345fs	0.984	NULL	NULL	-	no_errors	FAM181A	HGNC	ENSG00000140067				43	0	0	25	11	30.5556
SETD3	0	genome.wustl.edu	37	14	99871696	99871696	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	14	99871696	99871696	A	-	DEL	SETD3	ENST00000331768	human	ensembl	74_37	-1	known	frame_shift_del	c.937	p.Y313fs	1.000	pfam_SET_dom	pfam_Rubisco_LSMT_subst-bd,pfam_SET_dom,superfamily_Rubisco_LSMT_subst-bd	-	no_errors	SETD3	HGNC	ENSG00000183576				67	0	0	53	26	32.9114
SNHG14	0	genome.wustl.edu	37	15	25227196	25227196	+	RNA	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	15	25227196	25227196	A	-	DEL	SNHG14	ENST00000459433	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.486	-	-	-	no_errors	SNHG14	HGNC	ENSG00000224078				275	0	0	231	15	6.09756
TMCO5A	0	genome.wustl.edu	37	15	38228551	38228551	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	15	38228551	38228551	A	-	DEL	TMCO5A	ENST00000319669	human	ensembl	74_37	+1	known	frame_shift_del	c.27	p.R11fs	1.000	NULL	NULL	-	no_errors	TMCO5A	HGNC	ENSG00000166069				138	0	0	97	33	25.3846
BUB1B	0	genome.wustl.edu	37	15	40477506	40477506	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	15	40477506	40477506	C	-	DEL	BUB1B	ENST00000412359	human	ensembl	74_37	+1	known	frame_shift_del	c.934	p.M314fs	1.000	NULL	pfam_Mad3_BUB1_I,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Mad3_BUB1_I	-	no_errors	BUB1B	HGNC	ENSG00000156970				148	0	0	122	36	22.7848
PLA2G4E	0	genome.wustl.edu	37	15	42302336	42302338	+	In_Frame_Del	DEL	CCA	CCA	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	CCA	CCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	15	42302336	42302338	CCA	-	DEL	PLA2G4E	ENST00000413860	human	ensembl	74_37	-1	known	in_frame_del	c.110_108	p.G38in_frame_del	0.066:0.047:0.024	pfscan_C2_dom	pfam_LysoPLipase_cat_dom,pfam_C2_dom,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_dom,smart_C2_dom,smart_LysoPLipase_cat_dom,pfscan_C2_dom,pfscan_LysoPLipase_cat_dom	-	no_errors	PLA2G4E	HGNC	ENSG00000188089				18	0	0	17	8	32
ZNF106	0	genome.wustl.edu	37	15	42742957	42742957	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	15	42742957	42742957	A	-	DEL	ZNF106	ENST00000263805	human	ensembl	74_37	-1	known	frame_shift_del	c.1444	p.S482fs	0.139	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_Znf_C2H2-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ZNF106	HGNC	ENSG00000103994				201	0	0	206	12	5.50459
TP53BP1	0	genome.wustl.edu	37	15	43748661	43748661	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	15	43748661	43748661	T	-	DEL	TP53BP1	ENST00000382044	human	ensembl	74_37	-1	known	frame_shift_del	c.2145	p.E716fs	0.002	NULL	pfam_53-BP1_Tudor,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TP53BP1	HGNC	ENSG00000067369				140	0	0	108	41	27.5168
RNF111	0	genome.wustl.edu	37	15	59376343	59376343	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	15	59376343	59376343	C	-	DEL	RNF111	ENST00000434298	human	ensembl	74_37	+1	known	frame_shift_del	c.2340	p.P782fs	0.993	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF111	HGNC	ENSG00000157450				48	0	0	33	43	56.5789
NARG2	0	genome.wustl.edu	37	15	60758863	60758863	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	15	60758863	60758863	A	-	DEL	NARG2	ENST00000261520	human	ensembl	74_37	-1	known	frame_shift_del	c.458	p.L153fs	0.993	NULL	pfam_NARG2_C	-	no_errors	NARG2	HGNC	ENSG00000128915				78	0	0	53	22	29.3333
CHRNA5	0	genome.wustl.edu	37	15	78882366	78882366	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	15	78882366	78882366	T	-	DEL	CHRNA5	ENST00000299565	human	ensembl	74_37	+1	known	frame_shift_del	c.633	p.F213fs	0.958	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA5	HGNC	ENSG00000169684				112	0	0	91	16	14.9533
LOC338963	0	genome.wustl.edu	37	15	83381756	83381756	+	RNA	DEL	T	T	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	15	83381756	83381756	T	-	DEL	LOC338963	ENST00000440479	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	AC105339.1	Clone_based_vega_gene	ENSG00000228141				9	0	0	6	3	33.3333
BLM	0	genome.wustl.edu	37	15	91304139	91304139	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	15	91304139	91304139	A	-	DEL	BLM	ENST00000355112	human	ensembl	74_37	+1	known	frame_shift_del	c.1536	p.N515fs	0.003	NULL	pfam_RQC_domain,pfam_BDHCT,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_HRDC_dom,superfamily_P-loop_NTPase,superfamily_HRDC-like,smart_Helicase_ATP-bd,smart_Helicase_C,smart_RQC_domain,smart_HRDC_dom,pfscan_HRDC_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	BLM	HGNC	ENSG00000197299				81	0	0	71	27	27.551
INO80E	0	genome.wustl.edu	37	16	30016653	30016653	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	16	30016653	30016653	C	-	DEL	INO80E	ENST00000563197	human	ensembl	74_37	+1	known	frame_shift_del	c.625	p.T212fs	1.000	NULL	NULL	-	no_errors	INO80E	HGNC	ENSG00000169592				9	0	0	5	3	37.5
SLX4	0	genome.wustl.edu	37	16	3647657	3647657	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	16	3647657	3647657	G	-	DEL	SLX4	ENST00000294008	human	ensembl	74_37	-1	known	frame_shift_del	c.1406	p.P469fs	0.852	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	SLX4	HGNC	ENSG00000188827				112	0	0	83	23	21.6981
CHD9	0	genome.wustl.edu	37	16	53348351	53348351	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	16	53348351	53348351	A	-	DEL	CHD9	ENST00000398510	human	ensembl	74_37	+1	known	frame_shift_del	c.7285	p.R2431fs	1.000	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD9	HGNC	ENSG00000177200				22	0	0	21	6	22.2222
ZNF319	0	genome.wustl.edu	37	16	58031628	58031628	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	16	58031628	58031628	G	-	DEL	ZNF319	ENST00000299237	human	ensembl	74_37	-1	known	frame_shift_del	c.542	p.P181fs	0.002	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF319	HGNC	ENSG00000166188				65	0	0	54	17	23.9437
ADAMTS18	0	genome.wustl.edu	37	16	77356311	77356311	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	16	77356311	77356311	A	-	DEL	ADAMTS18	ENST00000282849	human	ensembl	74_37	-1	known	frame_shift_del	c.2085	p.F695fs	0.998	NULL	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS18	HGNC	ENSG00000140873				107	0	0	85	40	32
VPS9D1	0	genome.wustl.edu	37	16	89783208	89783208	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	16	89783208	89783208	G	-	DEL	VPS9D1	ENST00000389386	human	ensembl	74_37	-1	known	frame_shift_del	c.198	p.D67fs	0.118	NULL	pfam_VPS9,smart_VPS9_subgr,pfscan_VPS9	-	no_errors	VPS9D1	HGNC	ENSG00000075399				18	0	0	17	4	19.0476
EPN2	0	genome.wustl.edu	37	17	19232950	19232950	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	19232950	19232950	A	-	DEL	EPN2	ENST00000314728	human	ensembl	74_37	+1	known	frame_shift_del	c.1401	p.T470fs	1.000	NULL	pfam_Epsin_dom_N,pfam_ANTH_dom,superfamily_ENTH_VHS,smart_Epsin-like_N,smart_Ubiquitin-int_motif,pfscan_Epsin-like_N,pfscan_Ubiquitin-int_motif	-	no_errors	EPN2	HGNC	ENSG00000072134				88	0	0	65	36	35.6436
UBBP4	0	genome.wustl.edu	37	17	21731489	21731489	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	21731489	21731489	C	-	DEL	UBBP4	ENST00000578713	human	ensembl	74_37	+1	putative	frame_shift_del	c.564	p.D191fs	1.000	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup,prints_Ubiquitin	-	no_errors	UBBP4	HGNC	ENSG00000263563				77	0	0	62	21	25.3012
KSR1	0	genome.wustl.edu	37	17	25910016	25910016	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	25910016	25910016	C	-	DEL	KSR1	ENST00000319524	human	ensembl	74_37	+1	known	frame_shift_del	c.865	p.P291fs	0.999	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	KSR1	HGNC	ENSG00000141068				11	0	0	7	5	41.6667
CLUH	0	genome.wustl.edu	37	17	2601713	2601713	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	2601713	2601713	C	-	DEL	CLUH	ENST00000435359	human	ensembl	74_37	-1	known	frame_shift_del	c.1324	p.D442fs	1.000	NULL	superfamily_GSKIP_dom	-	no_errors	CLUH	HGNC	ENSG00000132361				33	0	0	27	5	15.625
RPL23A	0	genome.wustl.edu	37	17	27047808	27047810	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	27047808	27047810	AAG	-	DEL	RPL23A	ENST00000422514	human	ensembl	74_37	+1	known	in_frame_del	c.109_111	p.K39in_frame_del	1.000:1.000:1.000	pfam_Ribosomal_L23/L25_N	pfam_Ribosomal_L23/L25_N,pfam_Ribosomal_L25/23,superfamily_Ribosomal_L23/L15e_core_dom,tigrfam_Ribosomal_L23	-	no_errors	RPL23A	HGNC	ENSG00000198242				101	0	0	109	10	8.40336
NR1D1	0	genome.wustl.edu	37	17	38252308	38252309	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	38252308	38252309	TC	-	DEL	NR1D1	ENST00000246672	human	ensembl	74_37	-1	known	frame_shift_del	c.637_636	p.K213fs	1.000:1.000	NULL	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR1D1	HGNC	ENSG00000126368				61	0	0	56	7	11.1111
GGT6	0	genome.wustl.edu	37	17	4461879	4461879	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	4461879	4461879	G	-	DEL	GGT6	ENST00000574154	human	ensembl	74_37	-1	known	frame_shift_del	c.913	p.Q305fs	1.000	NULL	pfam_GGT_peptidase,prints_GGT_peptidase	-	no_errors	GGT6	HGNC	ENSG00000167741				9	0	0	12	2	14.2857
KIF1C	0	genome.wustl.edu	37	17	4927147	4927147	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	4927147	4927147	C	-	DEL	KIF1C	ENST00000320785	human	ensembl	74_37	+1	known	frame_shift_del	c.3013	p.P1006fs	0.994	NULL	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1C	HGNC	ENSG00000129250				33	0	0	28	9	24.3243
RNFT1	0	genome.wustl.edu	37	17	58033900	58033900	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	58033900	58033900	A	-	DEL	RNFT1	ENST00000305783	human	ensembl	74_37	-1	known	frame_shift_del	c.1020	p.F340fs	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNFT1	HGNC	ENSG00000189050				49	0	0	38	20	34.4828
MIR633	0	genome.wustl.edu	37	17	61021673	61021673	+	RNA	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	61021673	61021673	A	-	DEL	MIR633	ENST00000384821	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	MIR633	HGNC	ENSG00000207552				12	0	0	6	2	25
DNAH2	0	genome.wustl.edu	37	17	7646597	7646597	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	7646597	7646597	T	-	DEL	DNAH2	ENST00000082259	human	ensembl	74_37	+1	known	frame_shift_del	c.2287	p.S766fs	0.000	NULL	pfam_Dynein_heavy_dom-1	-	no_errors	DNAH2	HGNC	ENSG00000183914				14	0	0	8	11	57.8947
ENGASE	0	genome.wustl.edu	37	17	77073557	77073557	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	17	77073557	77073557	T	-	DEL	ENGASE	ENST00000579016	human	ensembl	74_37	+1	known	frame_shift_del	c.192	p.S66fs	0.020	NULL	pfam_Glyco_hydro_85,pfscan_BRCT_dom	-	no_errors	ENGASE	HGNC	ENSG00000167280				59	0	0	44	24	35.2941
ENSG00000252258	0	genome.wustl.edu	37	18	3025533	3025533	+	RNA	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	18	3025533	3025533	A	-	DEL	ENSG00000252258	ENST00000516449	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors	SNORA70	RFAM	ENSG00000252258				21	0	0	18	4	18.1818
FHOD3	0	genome.wustl.edu	37	18	34205516	34205516	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	18	34205516	34205516	C	-	DEL	FHOD3	ENST00000257209	human	ensembl	74_37	+1	known	frame_shift_del	c.1000	p.S336fs	0.999	superfamily_ARM-type_fold	pfam_FH2_Formin,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FHOD3	HGNC	ENSG00000134775				41	0	0	34	8	19.0476
TGIF1	0	genome.wustl.edu	37	18	3457752	3457753	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	18	3457752	3457753	CT	-	DEL	TGIF1	ENST00000330513	human	ensembl	74_37	+1	known	frame_shift_del	c.1020_1021	p.L342fs	1.000:1.000	NULL	pfam_Homeobox_KN_domain,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	TGIF1	HGNC	ENSG00000177426				125	0	0	104	31	22.963
MYO5B	0	genome.wustl.edu	37	18	47480799	47480800	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	18	47480799	47480800	-	G	INS	MYO5B	ENST00000285039	human	ensembl	74_37	-1	known	frame_shift_ins	c.1552_1551	p.K517fs	1.000:1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5B	HGNC	ENSG00000167306				74	0	0	45	12	21.0526
LMAN1	0	genome.wustl.edu	37	18	57013194	57013194	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	18	57013194	57013194	T	-	DEL	LMAN1	ENST00000251047	human	ensembl	74_37	-1	known	frame_shift_del	c.912	p.E305fs	0.898	superfamily_HMG_box_dom	pfam_Lectin_leg,superfamily_ConA-like_lec_gl_sf,superfamily_HMG_box_dom	-	no_errors	LMAN1	HGNC	ENSG00000074695				70	0	0	73	24	24.7423
ECSIT	0	genome.wustl.edu	37	19	11618821	11618821	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	19	11618821	11618821	G	-	DEL	ECSIT	ENST00000270517	human	ensembl	74_37	-1	known	frame_shift_del	c.781	p.Q261fs	0.504	pfam_ECSIT	pfam_ECSIT	-	no_errors	ECSIT	HGNC	ENSG00000130159				79	0	0	64	32	33.3333
ZNF506	0	genome.wustl.edu	37	19	19916883	19916883	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	19	19916883	19916883	T	-	DEL	ZNF506	ENST00000443905	human	ensembl	74_37	-1	known	frame_shift_del	c.183	p.K61fs	0.125	smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF506	HGNC	ENSG00000081665				141	0	0	111	31	21.831
KMT2B	0	genome.wustl.edu	37	19	36223002	36223002	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	19	36223002	36223002	G	-	DEL	KMT2B	ENST00000222270	human	ensembl	74_37	+1	known	frame_shift_del	c.5631	p.G1879fs	0.997	pirsf_MeTrfase_trithorax	pirsf_MeTrfase_trithorax,pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KMT2B	Uniprot_gn	ENSG00000272333				16	0	0	4	4	50
PLEKHG2	0	genome.wustl.edu	37	19	39913905	39913906	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	19	39913905	39913906	-	T	INS	PLEKHG2	ENST00000409794	human	ensembl	74_37	+1	known	frame_shift_ins	c.2211_2212	p.G737fs	0.004:0.008	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG2	HGNC	ENSG00000090924				73	0	0	50	9	15.2542
EXOC3L2	0	genome.wustl.edu	37	19	45716496	45716496	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	19	45716496	45716496	G	-	DEL	EXOC3L2	ENST00000252482	human	ensembl	74_37	-1	known	frame_shift_del	c.1061	p.P354fs	0.365	NULL	pfam_Sec6,superfamily_Tet_transcr_reg_TetR-rel_C	-	no_errors	EXOC3L2	HGNC	ENSG00000130201				13	0	0	18	7	28
TEAD2	0	genome.wustl.edu	37	19	49850473	49850473	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	19	49850473	49850473	G	-	DEL	TEAD2	ENST00000311227	human	ensembl	74_37	-1	known	frame_shift_del	c.883	p.H295fs	0.961	pfam_TEA/ATTS,pirsf_TEF	pfam_TEA/ATTS,smart_TEA/ATTS,pirsf_TEF,pfscan_TEA/ATTS,prints_TEA/ATTS	-	no_errors	TEAD2	HGNC	ENSG00000074219				106	0	0	103	43	29.4521
KLK1	0	genome.wustl.edu	37	19	51323227	51323227	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	19	51323227	51323227	T	-	DEL	KLK1	ENST00000301420	human	ensembl	74_37	-1	known	frame_shift_del	c.561	p.A188fs	0.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Peptidase_S1	-	no_errors	KLK1	HGNC	ENSG00000167748				52	0	0	31	12	27.907
ZIM3	0	genome.wustl.edu	37	19	57646555	57646555	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	19	57646555	57646555	T	-	DEL	ZIM3	ENST00000269834	human	ensembl	74_37	-1	known	frame_shift_del	c.1150	p.I384fs	0.890	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZIM3	HGNC	ENSG00000141946				138	0	0	95	44	31.6547
ZNF543	0	genome.wustl.edu	37	19	57839258	57839258	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	19	57839258	57839258	G	-	DEL	ZNF543	ENST00000321545	human	ensembl	74_37	+1	known	frame_shift_del	c.428	p.K145fs	0.002	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF543	HGNC	ENSG00000178229				80	0	0	52	9	14.7541
SLC20A1	0	genome.wustl.edu	37	2	113416440	113416441	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	113416440	113416441	-	A	INS	SLC20A1	ENST00000272542	human	ensembl	74_37	+1	known	frame_shift_ins	c.817_818	p.N276fs	1.000:1.000	pfam_Phos_transporter	pfam_Phos_transporter	-	no_errors	SLC20A1	HGNC	ENSG00000144136				112	0	0	106	29	21.4815
IL37	0	genome.wustl.edu	37	2	113671381	113671382	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	113671381	113671382	-	C	INS	IL37	ENST00000263326	human	ensembl	74_37	+1	known	frame_shift_ins	c.95_96	p.L34fs	0.000:0.000	NULL	pfam_IL-1,superfamily_Cytokine_IL1-like,smart_IL-1,prints_IL-1,prints_IL-1RA/IL-36	-	no_errors	IL37	HGNC	ENSG00000125571				98	0	0	77	18	18.9474
ACVR2A	0	genome.wustl.edu	37	2	148683686	148683686	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	148683686	148683686	A	-	DEL	ACVR2A	ENST00000241416	human	ensembl	74_37	+1	known	frame_shift_del	c.1303	p.K437fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_TGFB_receptor	-	no_errors	ACVR2A	HGNC	ENSG00000121989				127	0	0	63	72	53.3333
ENSG00000237844	0	genome.wustl.edu	37	2	164606328	164606331	+	RNA	DEL	TCCT	TCCT	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	TCCT	TCCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	164606328	164606331	TCCT	-	DEL	ENSG00000237844	ENST00000429636	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000:0.000:0.000	-	-	-	no_errors	AC092684.1	Clone_based_vega_gene	ENSG00000237844				16	0	0	9	2	18.1818
SCN3A	0	genome.wustl.edu	37	2	165997473	165997474	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	165997473	165997474	-	G	INS	SCN3A	ENST00000283254	human	ensembl	74_37	-1	known	frame_shift_ins	c.1707_1706	p.R570fs	1.000:1.000	pfam_DUF3451	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfscan_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN3A	HGNC	ENSG00000153253				36	0	0	48	11	18.6441
ITGA6	0	genome.wustl.edu	37	2	173368931	173368931	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	173368931	173368931	A	-	DEL	ITGA6	ENST00000264106	human	ensembl	74_37	+1	known	frame_shift_del	c.3344	p.K1117fs	1.000	NULL	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA6	HGNC	ENSG00000091409				33	0	0	26	9	25.7143
OSBPL6	0	genome.wustl.edu	37	2	179255915	179255915	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	179255915	179255915	C	-	DEL	OSBPL6	ENST00000315022	human	ensembl	74_37	+1	known	frame_shift_del	c.2429	p.S812fs	1.000	pfam_Oxysterol-bd	pfam_Oxysterol-bd,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL6	HGNC	ENSG00000079156				103	0	0	80	26	24.5283
BMPR2	0	genome.wustl.edu	37	2	203420130	203420130	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	203420130	203420130	A	-	DEL	BMPR2	ENST00000374580	human	ensembl	74_37	+1	known	frame_shift_del	c.1742	p.N583fs	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	BMPR2	HGNC	ENSG00000204217				104	0	0	50	59	54.1284
ZDBF2	0	genome.wustl.edu	37	2	207175826	207175826	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	207175826	207175826	A	-	DEL	ZDBF2	ENST00000374423	human	ensembl	74_37	+1	known	frame_shift_del	c.6574	p.K2193fs	0.000	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186				59	0	0	64	23	26.4368
ZNF142	0	genome.wustl.edu	37	2	219508084	219508084	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	219508084	219508084	C	-	DEL	ZNF142	ENST00000411696	human	ensembl	74_37	-1	known	frame_shift_del	c.3155	p.G1052fs	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF142	HGNC	ENSG00000115568				63	0	0	36	7	16.2791
GPR55	0	genome.wustl.edu	37	2	231774722	231774722	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	231774722	231774722	C	-	DEL	GPR55	ENST00000392039	human	ensembl	74_37	-1	known	frame_shift_del	c.956	p.G319fs	0.047	NULL	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	GPR55	HGNC	ENSG00000135898				88	0	0	58	24	29.2683
NCL	0	genome.wustl.edu	37	2	232327984	232327986	+	In_Frame_Del	DEL	GGA	GGA	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	GGA	GGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	232327984	232327986	GGA	-	DEL	NCL	ENST00000322723	human	ensembl	74_37	-1	known	in_frame_del	c.62_60	p.P21in_frame_del	0.812:0.819:0.722	NULL	pfam_RRM_dom,smart_RRM_dom,smart_RRM_dom_euk,pfscan_RRM_dom	-	no_errors	NCL	HGNC	ENSG00000115053				131	0	0	130	36	21.6867
ITSN2	0	genome.wustl.edu	37	2	24484599	24484599	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	24484599	24484599	T	-	DEL	ITSN2	ENST00000355123	human	ensembl	74_37	-1	known	frame_shift_del	c.2368	p.T790fs	0.998	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,pfam_C2_dom,superfamily_DH-domain,superfamily_C2_dom,superfamily_SH3_domain,smart_EPS15_homology,smart_EF_hand_dom,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_dom,pfscan_EF_hand_dom,pfscan_EPS15_homology,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain,prints_p67phox	-	no_errors	ITSN2	HGNC	ENSG00000198399				51	0	0	33	10	23.2558
RPS27A	0	genome.wustl.edu	37	2	55462017	55462019	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	55462017	55462019	GAA	-	DEL	RPS27A	ENST00000272317	human	ensembl	74_37	+1	known	in_frame_del	c.240_242	p.K83in_frame_del	0.998:1.000:1.000	NULL	pfam_Ubiquitin_dom,pfam_Ribosomal_S27a,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup,prints_Ubiquitin	-	no_errors	RPS27A	HGNC	ENSG00000143947				51	0	0	48	8	14.2857
EIF5B	0	genome.wustl.edu	37	2	99977965	99977965	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	2	99977965	99977965	A	-	DEL	EIF5B	ENST00000289371	human	ensembl	74_37	+1	known	frame_shift_del	c.601	p.N203fs	1.000	NULL	pfam_EF_GTP-bd_dom,pfam_TIF_IF2_dom3,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Transl_B-barrel,superfamily_TIF_IF2_dom3,prints_EF_GTP-bd_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	EIF5B	HGNC	ENSG00000158417				92	0	0	57	28	32.9412
NDUFAF5	0	genome.wustl.edu	37	20	13797842	13797842	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	20	13797842	13797842	A	-	DEL	NDUFAF5	ENST00000378106	human	ensembl	74_37	+1	known	frame_shift_del	c.1024	p.K343fs	0.026	NULL	pfam_Methyltransf_11,pfam_Methyltransf_12,pfam_UbiE/COQ5_MeTrFase,pfam_Put_SAM_MeTrfase	-	no_errors	NDUFAF5	HGNC	ENSG00000101247				196	0	0	229	60	20.7612
CD93	0	genome.wustl.edu	37	20	23066469	23066469	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	20	23066469	23066469	C	-	DEL	CD93	ENST00000246006	human	ensembl	74_37	-1	known	frame_shift_del	c.361	p.E121fs	0.689	pirsf_CD93/CD141,pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pirsf_CD93/CD141,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_MFS_dom_general_subst_transpt,smart_C-type_lectin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_C-type_lectin	-	no_errors	CD93	HGNC	ENSG00000125810				11	0	0	10	6	37.5
GINS1	0	genome.wustl.edu	37	20	25422397	25422397	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	20	25422397	25422397	A	-	DEL	GINS1	ENST00000262460	human	ensembl	74_37	+1	known	frame_shift_del	c.507	p.N172fs	0.232	NULL	NULL	-	no_errors	GINS1	HGNC	ENSG00000101003				66	0	0	94	13	12.1495
SUN5	0	genome.wustl.edu	37	20	31577498	31577498	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	20	31577498	31577498	T	-	DEL	SUN5	ENST00000356173	human	ensembl	74_37	-1	known	frame_shift_del	c.541	p.M181fs	0.031	NULL	pfam_Sad1_UNC_C,superfamily_Galactose-bd-like	-	no_errors	SUN5	HGNC	ENSG00000167098				44	0	0	63	23	26.7442
PTGIS	0	genome.wustl.edu	37	20	48127617	48127617	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	20	48127617	48127617	C	-	DEL	PTGIS	ENST00000244043	human	ensembl	74_37	-1	known	frame_shift_del	c.1306	p.A436fs	0.995	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I	-	no_errors	PTGIS	HGNC	ENSG00000124212				26	0	0	41	15	26.7857
HRH3	0	genome.wustl.edu	37	20	60794811	60794813	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	20	60794811	60794813	GAA	-	DEL	HRH3	ENST00000317393	human	ensembl	74_37	-1	known	in_frame_del	c.216_214	p.F72in_frame_del	1.000:1.000:1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Histamine_H3_rcpt,prints_GPCR_Rhodpsn,prints_Musac_Ach_rcpt	-	no_errors	HRH3	HGNC	ENSG00000101180				38	0	0	49	8	14.0351
KRTAP25-1	0	genome.wustl.edu	37	21	31661779	31661780	+	Frame_Shift_Ins	INS	-	-	AA			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	21	31661779	31661780	-	AA	INS	KRTAP25-1	ENST00000416044	human	ensembl	74_37	-1	known	frame_shift_ins	c.30_29	p.S12fs	0.000:0.000	NULL	pfam_KRTAP_PMG	-	no_errors	KRTAP25-1	HGNC	ENSG00000232263				9	0	0	4	2	33.3333
BRWD1	0	genome.wustl.edu	37	21	40558989	40558989	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	21	40558989	40558989	A	-	DEL	BRWD1	ENST00000333229	human	ensembl	74_37	-1	known	frame_shift_del	c.6926	p.L2309fs	0.001	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_WD40_repeat_dom,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	BRWD1	HGNC	ENSG00000185658				100	0	0	58	38	39.5833
PCNT	0	genome.wustl.edu	37	21	47858077	47858077	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	21	47858077	47858077	A	-	DEL	PCNT	ENST00000359568	human	ensembl	74_37	+1	known	frame_shift_del	c.9100	p.M3036fs	0.184	NULL	pfam_PACT_domain	-	no_errors	PCNT	HGNC	ENSG00000160299				36	0	0	30	9	23.0769
P2RX6	0	genome.wustl.edu	37	22	21377597	21377597	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	22	21377597	21377597	T	-	DEL	P2RX6	ENST00000413302	human	ensembl	74_37	+1	known	frame_shift_del	c.672	p.F225fs	0.952	pfam_P2X_purnocptor,prints_P2X6_purnocptor,tigrfam_P2X_purnocptor	pfam_P2X_purnocptor,prints_P2X6_purnocptor,prints_P2X_purnocptor,tigrfam_P2X_purnocptor	-	no_errors	P2RX6	HGNC	ENSG00000099957				132	0	0	82	22	21.1538
MMP11	0	genome.wustl.edu	37	22	24124456	24124456	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	22	24124456	24124456	C	-	DEL	MMP11	ENST00000215743	human	ensembl	74_37	+1	known	frame_shift_del	c.1119	p.A375fs	0.965	pirsf_Pept_M10A_Metazoans,pfam_Hemopexin-like_repeat,superfamily_Hemopexin-like_dom,smart_Hemopexin-like_repeat	pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,superfamily_Hemopexin-like_dom,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP11	HGNC	ENSG00000099953				63	0	0	46	21	31.3433
NAGA	0	genome.wustl.edu	37	22	42458950	42458950	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	22	42458950	42458950	G	-	DEL	NAGA	ENST00000396398	human	ensembl	74_37	-1	known	frame_shift_del	c.838	p.L280fs	1.000	superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_27	pfam_Glyco_hydro_GHD,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_27	-	no_errors	NAGA	HGNC	ENSG00000198951				59	0	0	47	10	17.5439
SHANK3	0	genome.wustl.edu	37	22	51117521	51117521	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	22	51117521	51117521	G	-	DEL	SHANK3	ENST00000262795	human	ensembl	74_37	+1	known	frame_shift_del	c.675	p.G227fs	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_SAM_type1,pfam_Ankyrin_rpt,pfam_SAM_2,pfam_SH3_2,pfam_PDZ,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK3	HGNC	ENSG00000251322				14	0	0	5	4	44.4444
MORC1	0	genome.wustl.edu	37	3	108773613	108773613	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	3	108773613	108773613	C	-	DEL	MORC1	ENST00000232603	human	ensembl	74_37	-1	known	frame_shift_del	c.1292	p.G431fs	1.000	NULL	pfam_Znf_CW,superfamily_HATPase_ATP-bd,pfscan_Znf_CW	-	no_errors	MORC1	HGNC	ENSG00000114487				163	0	0	104	31	22.963
ZBTB20	0	genome.wustl.edu	37	3	114058003	114058003	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	3	114058003	114058003	G	-	DEL	ZBTB20	ENST00000474710	human	ensembl	74_37	-1	known	frame_shift_del	c.2075	p.P692fs	0.678	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB20	HGNC	ENSG00000181722				31	0	0	31	18	36.7347
PPP2R3A	0	genome.wustl.edu	37	3	135721164	135721164	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	3	135721164	135721164	A	-	DEL	PPP2R3A	ENST00000264977	human	ensembl	74_37	+1	known	frame_shift_del	c.824	p.T276fs	1.000	NULL	pfscan_EF_hand_dom	-	no_errors	PPP2R3A	HGNC	ENSG00000073711				60	0	0	49	20	28.9855
DZIP1L	0	genome.wustl.edu	37	3	137787113	137787113	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	3	137787113	137787113	G	-	DEL	DZIP1L	ENST00000327532	human	ensembl	74_37	-1	known	frame_shift_del	c.1712	p.P571fs	0.000	NULL	pfscan_Znf_C2H2	-	no_errors	DZIP1L	HGNC	ENSG00000158163				42	0	0	32	10	23.8095
IGSF10	0	genome.wustl.edu	37	3	151164080	151164081	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	3	151164080	151164081	-	T	INS	IGSF10	ENST00000282466	human	ensembl	74_37	-1	known	frame_shift_ins	c.3689_3688	p.S1230fs	0.000:0.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	IGSF10	HGNC	ENSG00000152580				150	0	0	76	35	31.5315
IFT80	0	genome.wustl.edu	37	3	160156368	160156368	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	3	160156368	160156368	T	-	DEL	IFT80	ENST00000483754	human	ensembl	74_37	-1	known	frame_shift_del	c.604	p.S202fs	0.000	NULL	pfam_WD40_repeat,pfam_Znf_C3HC4_RING-type,pfam_Znf_B-box,superfamily_WD40_repeat_dom,smart_Znf_RING,smart_WD40_repeat,pfscan_Znf_B-box,pfscan_Znf_RING,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	RP11-432B6.3	Clone_based_vega_gene	ENSG00000248710				77	0	0	59	28	32.1839
SI	0	genome.wustl.edu	37	3	164758862	164758862	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	3	164758862	164758862	A	-	DEL	SI	ENST00000264382	human	ensembl	74_37	-1	known	frame_shift_del	c.2025	p.F675fs	1.000	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,smart_P_trefoil	-	no_errors	SI	HGNC	ENSG00000090402				119	0	0	101	38	27.3381
BCHE	0	genome.wustl.edu	37	3	165491219	165491219	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	3	165491219	165491219	T	-	DEL	BCHE	ENST00000264381	human	ensembl	74_37	-1	known	frame_shift_del	c.1760	p.N587fs	1.000	pfam_AChE_tetra	pfam_CarbesteraseB,pfam_AChE_tetra,pfam_AB_hydrolase_3,prints_Cholinesterase	-	no_errors	BCHE	HGNC	ENSG00000114200				37	0	0	29	15	34.0909
FETUB	0	genome.wustl.edu	37	3	186362544	186362544	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	3	186362544	186362544	A	-	DEL	FETUB	ENST00000265029	human	ensembl	74_37	+1	known	frame_shift_del	c.429	p.K146fs	0.854	NULL	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	FETUB	HGNC	ENSG00000090512				110	0	0	79	28	26.1682
MB21D2	0	genome.wustl.edu	37	3	192517004	192517004	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	3	192517004	192517004	T	-	DEL	MB21D2	ENST00000392452	human	ensembl	74_37	-1	known	frame_shift_del	c.647	p.N216fs	1.000	NULL	pfam_Mab-21_dom	-	no_errors	MB21D2	HGNC	ENSG00000180611				72	0	0	86	25	22.5225
ATP13A3	0	genome.wustl.edu	37	3	194167726	194167727	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	3	194167726	194167727	-	T	INS	ATP13A3	ENST00000256031	human	ensembl	74_37	-1	known	frame_shift_ins	c.1427_1426	p.I476fs	0.048:0.016	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_Cation_typ_V,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP13A3	HGNC	ENSG00000133657				101	0	0	81	23	22.1154
SETD2	0	genome.wustl.edu	37	3	47143009	47143010	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	3	47143009	47143010	-	A	INS	SETD2	ENST00000409792	human	ensembl	74_37	-1	known	frame_shift_ins	c.4954_4953	p.T1651fs	1.000:1.000	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	pfam_SRI,pfam_SET_dom,pfam_WW_dom,superfamily_WW_dom,superfamily_Ferritin-like_SF,smart_AWS,smart_SET_dom,smart_Post-SET_dom,smart_WW_dom,pfscan_AWS,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_WW_dom	-	no_errors	SETD2	HGNC	ENSG00000181555				262	0	0	201	57	22.093
DOCK3	0	genome.wustl.edu	37	3	51413261	51413261	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	3	51413261	51413261	A	-	DEL	DOCK3	ENST00000266037	human	ensembl	74_37	+1	known	frame_shift_del	c.5495	p.G1834fs	1.000	NULL	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538				68	0	0	76	21	21.6495
TLR9	0	genome.wustl.edu	37	3	52257017	52257017	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	3	52257017	52257017	C	-	DEL	TLR9	ENST00000597542	human	ensembl	74_37	-1	known	frame_shift_del	c.1387	p.E463fs	0.133	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_TIR_dom,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR9	HGNC	ENSG00000239732				87	0	0	62	23	27.0588
TNNC1	0	genome.wustl.edu	37	3	52486500	52486501	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	3	52486500	52486501	-	T	INS	TNNC1	ENST00000232975	human	ensembl	74_37	-1	known	frame_shift_ins	c.54_53	p.N18fs	1.000:1.000	NULL	pfam_EF_hand_dom,smart_EF_hand_dom,prints_Recoverin,pfscan_EF_hand_dom	-	no_errors	TNNC1	HGNC	ENSG00000114854				28	0	0	26	10	27.7778
APPL1	0	genome.wustl.edu	37	3	57276921	57276921	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	3	57276921	57276921	A	-	DEL	APPL1	ENST00000288266	human	ensembl	74_37	+1	known	frame_shift_del	c.453	p.R154fs	0.881	NULL	pfam_PTB/PI_dom,smart_Pleckstrin_homology,smart_PTB/PI_dom,pfscan_Pleckstrin_homology,pfscan_PTB/PI_dom	-	no_errors	APPL1	HGNC	ENSG00000157500				56	0	0	56	14	20
MAGI1	0	genome.wustl.edu	37	3	65342221	65342221	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	3	65342221	65342221	G	-	DEL	MAGI1	ENST00000402939	human	ensembl	74_37	-1	known	frame_shift_del	c.4221	p.E1408fs	0.063	NULL	pfam_PDZ,pfam_WW_dom,pfam_GK/Ca_channel_bsu,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_PDZ,smart_GK/Ca_channel_bsu,smart_WW_dom,pfscan_PDZ,pfscan_WW_dom,pfscan_Guanylate_kin-like	-	no_errors	MAGI1	HGNC	ENSG00000151276				74	0	0	67	27	28.7234
ADH1A	0	genome.wustl.edu	37	4	100205902	100205903	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	4	100205902	100205903	-	T	INS	ADH1A	ENST00000209668	human	ensembl	74_37	-1	known	frame_shift_ins	c.318_317	p.N106fs	0.929:0.801	pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER	pfam_ADH_GroES-like,pfam_ADH_C,superfamily_GroES-like,smart_PKS_ER	-	no_errors	ADH1A	HGNC	ENSG00000187758				108	0	0	56	20	26.3158
NFKB1	0	genome.wustl.edu	37	4	103517339	103517339	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	4	103517339	103517339	A	-	DEL	NFKB1	ENST00000226574	human	ensembl	74_37	+1	known	frame_shift_del	c.1345	p.S450fs	0.000	NULL	pfam_RHD,pfam_Ankyrin_rpt,pfam_Death_domain,superfamily_p53-like_TF_DNA-bd,superfamily_Ankyrin_rpt-contain_dom,superfamily_Ig_E-set,superfamily_DEATH-like_dom,smart_IPT,smart_Ankyrin_rpt,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_RHD,prints_NF_Rel_Dor,prints_Ankyrin_rpt	-	no_errors	NFKB1	HGNC	ENSG00000109320				120	0	0	94	30	24.1935
LARP1B	0	genome.wustl.edu	37	4	129127627	129127627	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	4	129127627	129127627	A	-	DEL	LARP1B	ENST00000326639	human	ensembl	74_37	+1	known	frame_shift_del	c.2354	p.K787fs	1.000	smart_DM15	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,smart_DM15,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP1B	HGNC	ENSG00000138709				67	0	0	71	31	30.3922
CLGN	0	genome.wustl.edu	37	4	141313502	141313502	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	4	141313502	141313502	T	-	DEL	CLGN	ENST00000325617	human	ensembl	74_37	-1	known	frame_shift_del	c.1522	p.T508fs	0.000	NULL	pfam_Calret/calnex,superfamily_ConA-like_lec_gl_sf,superfamily_Calreticulin/calnexin_P_dom,prints_Calret/calnex	-	no_errors	CLGN	HGNC	ENSG00000153132				98	0	0	109	15	12.0968
CLCN3	0	genome.wustl.edu	37	4	170613460	170613460	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	4	170613460	170613460	A	-	DEL	CLCN3	ENST00000347613	human	ensembl	74_37	+1	known	frame_shift_del	c.925	p.R311fs	1.000	pfam_Cl-channel_volt-gated,superfamily_Cl-channel_core	pfam_Cl-channel_volt-gated,pfam_CBS_dom,superfamily_Cl-channel_core,smart_CBS_dom,prints_Cl-channel_volt-gated,prints_Cl_channel-3	-	no_errors	CLCN3	HGNC	ENSG00000109572				116	0	0	90	40	30.7692
GPM6A	0	genome.wustl.edu	37	4	176556153	176556155	+	In_Frame_Del	DEL	CGG	CGG	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	CGG	CGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	4	176556153	176556155	CGG	-	DEL	GPM6A	ENST00000280187	human	ensembl	74_37	-1	known	in_frame_del	c.740_738	p.CR246in_frame_delW	1.000:1.000:1.000	pfam_Myelin_PLP	pfam_Myelin_PLP,smart_Myelin_PLP,prints_Myelin_PLP	-	no_errors	GPM6A	HGNC	ENSG00000150625				54	0	0	44	15	25.4237
AGA	0	genome.wustl.edu	37	4	178354444	178354444	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	4	178354444	178354444	T	-	DEL	AGA	ENST00000264595	human	ensembl	74_37	-1	known	frame_shift_del	c.864	p.V289fs	1.000	pfam_Peptidase_T2	pfam_Peptidase_T2	-	no_errors	AGA	HGNC	ENSG00000038002				150	0	0	184	10	5.15464
ATP10D	0	genome.wustl.edu	37	4	47559698	47559698	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	4	47559698	47559698	G	-	DEL	ATP10D	ENST00000273859	human	ensembl	74_37	+1	known	frame_shift_del	c.1842	p.L617fs	0.439	superfamily_HAD-like_dom	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP10D	HGNC	ENSG00000145246				59	0	0	45	20	30.7692
KIAA1211	0	genome.wustl.edu	37	4	57181941	57181941	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	4	57181941	57181941	C	-	DEL	KIAA1211	ENST00000504228	human	ensembl	74_37	+1	known	frame_shift_del	c.2273	p.Q760fs	0.000	NULL	NULL	-	no_errors	KIAA1211	HGNC	ENSG00000109265				49	0	0	48	8	14.2857
WDFY3	0	genome.wustl.edu	37	4	85716121	85716121	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	4	85716121	85716121	A	-	DEL	WDFY3	ENST00000295888	human	ensembl	74_37	-1	known	frame_shift_del	c.3179	p.L1060fs	1.000	NULL	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl_sf,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625				30	0	0	37	14	27.451
DMP1	0	genome.wustl.edu	37	4	88584031	88584031	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	4	88584031	88584031	C	-	DEL	DMP1	ENST00000339673	human	ensembl	74_37	+1	known	frame_shift_del	c.1101	p.D369fs	0.993	pfam_DMP1	pfam_DMP1	-	no_errors	DMP1	HGNC	ENSG00000152592				210	0	0	146	80	35.3982
ATOH1	0	genome.wustl.edu	37	4	94750382	94750382	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	4	94750382	94750382	G	-	DEL	ATOH1	ENST00000306011	human	ensembl	74_37	+1	known	frame_shift_del	c.305	p.E104fs	0.113	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	ATOH1	HGNC	ENSG00000172238				15	0	0	11	4	26.6667
SLCO6A1	0	genome.wustl.edu	37	5	101748695	101748695	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	5	101748695	101748695	T	-	DEL	SLCO6A1	ENST00000379807	human	ensembl	74_37	-1	known	frame_shift_del	c.1625	p.K542fs	0.982	pfam_OA_transporter,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO6A1	HGNC	ENSG00000205359				9	0	0	7	4	36.3636
PPIP5K2	0	genome.wustl.edu	37	5	102537309	102537309	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	5	102537309	102537309	A	-	DEL	PPIP5K2	ENST00000358359	human	ensembl	74_37	+1	known	frame_shift_del	c.3706	p.N1238fs	0.999	NULL	pfam_His_Pase_superF_clade-2	-	no_errors	PPIP5K2	HGNC	ENSG00000145725				46	0	0	38	17	30.9091
DNAH5	0	genome.wustl.edu	37	5	13701426	13701426	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	5	13701426	13701426	A	-	DEL	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	frame_shift_del	c.13458	p.F4486fs	1.000	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				183	0	0	114	47	29.1925
PPP2R2B	0	genome.wustl.edu	37	5	145969652	145969652	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	5	145969652	145969652	C	-	DEL	PPP2R2B	ENST00000394414	human	ensembl	74_37	-1	known	frame_shift_del	c.1388	p.G463fs	1.000	superfamily_WD40_repeat_dom,pirsf_PP2A_PR55	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_PP2A_PR55,prints_PP2A_PR55	-	no_errors	PPP2R2B	HGNC	ENSG00000156475				133	0	0	117	31	20.9459
KIF4B	0	genome.wustl.edu	37	5	154395578	154395580	+	In_Frame_Del	DEL	AAC	AAC	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	AAC	AAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	5	154395578	154395580	AAC	-	DEL	KIF4B	ENST00000435029	human	ensembl	74_37	+1	known	in_frame_del	c.2159_2161	p.Q721in_frame_del	0.999:0.986:0.990	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF4B	HGNC	ENSG00000226650				122	0	0	90	27	23.0769
DRD1	0	genome.wustl.edu	37	5	174869692	174869692	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	5	174869692	174869692	G	-	DEL	DRD1	ENST00000393752	human	ensembl	74_37	-1	known	frame_shift_del	c.411	p.K138fs	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_ADR_fam	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Dopamine_D1_rcpt,prints_GPCR_Rhodpsn,prints_Dopamine_rcpt,prints_ADR_fam	-	no_errors	DRD1	HGNC	ENSG00000184845				125	0	0	79	32	28.8288
HNRNPAB	0	genome.wustl.edu	37	5	177633781	177633781	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	5	177633781	177633781	A	-	DEL	HNRNPAB	ENST00000358344	human	ensembl	74_37	+1	known	frame_shift_del	c.427	p.K144fs	1.000	pfscan_RRM_dom	pfam_RRM_dom,pfam_CARG-binding_factor_N,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPAB	HGNC	ENSG00000197451				121	0	0	95	39	29.1045
TBCA	0	genome.wustl.edu	37	5	77004142	77004142	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	5	77004142	77004142	T	-	DEL	TBCA	ENST00000380377	human	ensembl	74_37	-1	known	frame_shift_del	c.84	p.E29fs	1.000	pfam_CofA_tubulin-bd,superfamily_CofA_tubulin-bd	pfam_CofA_tubulin-bd,superfamily_CofA_tubulin-bd	-	no_errors	TBCA	HGNC	ENSG00000171530				49	0	0	57	16	21.9178
FAM151B	0	genome.wustl.edu	37	5	79837571	79837571	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	5	79837571	79837571	A	-	DEL	FAM151B	ENST00000282226	human	ensembl	74_37	+1	known	frame_shift_del	c.751	p.K252fs	0.967	pfam_DUF2181	pfam_DUF2181	-	no_errors	FAM151B	HGNC	ENSG00000152380				40	0	0	28	15	34.8837
GPR98	0	genome.wustl.edu	37	5	89923350	89923350	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	5	89923350	89923350	T	-	DEL	GPR98	ENST00000405460	human	ensembl	74_37	+1	known	frame_shift_del	c.995	p.P334fs	0.993	NULL	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199				115	0	0	85	51	37.5
WISP3	0	genome.wustl.edu	37	6	112389434	112389434	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	6	112389434	112389434	A	-	DEL	WISP3	ENST00000361714	human	ensembl	74_37	+1	known	frame_shift_del	c.670	p.K226fs	1.000	superfamily_Thrombospondin_1_rpt,pirsf_IGFBP_CNN,pfscan_Thrombospondin_1_rpt	pfam_IGFBP-like,pfam_Cys_knot,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_Thrombospondin_1_rpt,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C,pfscan_Thrombospondin_1_rpt	-	no_errors	WISP3	HGNC	ENSG00000112761				48	0	0	32	25	43.8596
ECT2L	0	genome.wustl.edu	37	6	139135710	139135710	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	6	139135710	139135710	T	-	DEL	ECT2L	ENST00000367682	human	ensembl	74_37	+1	known	frame_shift_del	c.149	p.L52fs	0.260	NULL	pfam_DH-domain,pfam_F-box_dom,superfamily_DH-domain,superfamily_F-box_dom,smart_DH-domain,pfscan_DH-domain	-	no_errors	ECT2L	HGNC	ENSG00000203734				41	0	0	19	9	32.1429
FBXO30	0	genome.wustl.edu	37	6	146126435	146126435	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	6	146126435	146126435	T	-	DEL	FBXO30	ENST00000237281	human	ensembl	74_37	-1	known	frame_shift_del	c.1107	p.V370fs	1.000	NULL	pfam_F-box_dom,superfamily_F-box_dom,superfamily_TRAF-like,pfscan_F-box_dom,pfscan_Znf_TRAF	-	no_errors	FBXO30	HGNC	ENSG00000118496				180	0	0	109	48	30.5732
SYNE1	0	genome.wustl.edu	37	6	152552704	152552705	+	Splice_Site	INS	-	-	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	6	152552704	152552705	-	A	INS	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	splice_site_ins	c.20863-3_20863-2	e112-2	1.000:0.002	-	-	-	no_errors	SYNE1	HGNC	ENSG00000131018				35	0	0	29	3	9.375
ARID1B	0	genome.wustl.edu	37	6	157405953	157405954	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	6	157405953	157405954	-	G	INS	ARID1B	ENST00000367148	human	ensembl	74_37	+1	known	frame_shift_ins	c.2156_2157	p.P723fs	0.992:0.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1B	HGNC	ENSG00000049618				76	0	0	49	6	10.9091
QKI	0	genome.wustl.edu	37	6	163899920	163899920	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	6	163899920	163899920	A	-	DEL	QKI	ENST00000361752	human	ensembl	74_37	+1	known	frame_shift_del	c.394	p.K134fs	1.000	smart_KH_dom	pfam_KH_dom_type_1,smart_KH_dom	-	no_errors	QKI	HGNC	ENSG00000112531				143	0	0	102	31	23.3083
OR2J1	0	genome.wustl.edu	37	6	29068729	29068729	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	6	29068729	29068729	A	-	DEL	OR2J1	ENST00000377171	human	ensembl	74_37	+1	known	frame_shift_del	c.10	p.N6fs	0.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR2J1	HGNC	ENSG00000204702				49	0	0	22	23	51.1111
LINC00243	0	genome.wustl.edu	37	6	30781189	30781190	+	RNA	INS	-	-	GT			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	6	30781189	30781190	-	GT	INS	LINC00243	ENST00000399196	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002:0.000	-	-	-	no_errors	LINC00243	HGNC	ENSG00000214894				9	0	0	7	2	22.2222
UNC5CL	0	genome.wustl.edu	37	6	41001794	41001795	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	6	41001794	41001795	-	C	INS	UNC5CL	ENST00000244565	human	ensembl	74_37	-1	known	frame_shift_ins	c.512_511	p.A171fs	1.000:1.000	pfam_ZU5,smart_ZU5,pfscan_ZU5	pfam_ZU5,pfam_Death_domain,superfamily_DEATH-like_dom,smart_ZU5,smart_Death_domain,pfscan_Death_domain,pfscan_ZU5	-	no_errors	UNC5CL	HGNC	ENSG00000124602				26	0	0	22	6	21.4286
MRPL2	0	genome.wustl.edu	37	6	43022057	43022057	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	6	43022057	43022057	G	-	DEL	MRPL2	ENST00000388752	human	ensembl	74_37	-1	known	frame_shift_del	c.873	p.M292fs	0.606	superfamily_Translation_prot_SH3-like	pfam_Ribosomal_L2_C,pfam_Rbsml_prot_L2_RNA-bd_dom,superfamily_Translation_prot_SH3-like,superfamily_NA-bd_OB-fold	-	no_errors	MRPL2	HGNC	ENSG00000112651				84	0	0	56	16	22.2222
MUT	0	genome.wustl.edu	37	6	49427150	49427151	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	6	49427150	49427151	-	A	INS	MUT	ENST00000274813	human	ensembl	74_37	-1	known	frame_shift_ins	c.30_29	p.L10fs	0.000:0.001	NULL	pfam_MeMalonylCoA_mutase_a/b_cat,pfam_Cobalamin-bd,superfamily_Cbl-dep_enz_cat,superfamily_Cobalamin-bd,tigrfam_MMCoA_mutase_a_cat,tigrfam_Acid_CoA_mut_C	-	no_errors	MUT	HGNC	ENSG00000146085				69	0	0	54	16	22.8571
TTK	0	genome.wustl.edu	37	6	80751910	80751910	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	6	80751910	80751910	A	-	DEL	TTK	ENST00000369798	human	ensembl	74_37	+1	known	frame_shift_del	c.2565	p.K857fs	0.011	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TTK	HGNC	ENSG00000112742				45	0	0	56	18	24.3243
CYB5R4	0	genome.wustl.edu	37	6	84634231	84634231	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	6	84634231	84634231	A	-	DEL	CYB5R4	ENST00000369681	human	ensembl	74_37	+1	known	frame_shift_del	c.734	p.E248fs	0.868	superfamily_HSP20-like_chaperone,pfscan_CS_dom	pfam_Cyt_B5-like_heme/steroid-bd,pfam_OxRdtase_FAD-bd_dom,pfam_OxRdtase_FAD/NAD-bd,pfam_CS_dom,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_Riboflavin_synthase-like_b-brl,superfamily_HSP20-like_chaperone,pfscan_CS_dom,pfscan_Cyt_B5-like_heme/steroid-bd,prints_NADH-Cyt_B5_reductase,prints_Cyt_B5-like_heme/steroid-bd	-	no_errors	CYB5R4	HGNC	ENSG00000065615				64	0	0	52	26	33.3333
MDN1	0	genome.wustl.edu	37	6	90417112	90417115	+	Frame_Shift_Del	DEL	CTCT	CTCT	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	CTCT	CTCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	6	90417112	90417115	CTCT	-	DEL	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	frame_shift_del	c.7982_7979	p.E2660fs	1.000:1.000:0.992:0.996	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				79	0	0	44	16	26.6667
SRRT	0	genome.wustl.edu	37	7	100479332	100479332	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	7	100479332	100479332	G	-	DEL	SRRT	ENST00000388793	human	ensembl	74_37	+1	known	frame_shift_del	c.304	p.G104fs	1.000	NULL	pfam_Arsenite-R_2,pfam_DUF3546	-	no_errors	SRRT	HGNC	ENSG00000087087				52	0	0	29	11	27.5
RNF148	0	genome.wustl.edu	37	7	122341965	122341966	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	7	122341965	122341966	-	A	INS	RNF148	ENST00000434824	human	ensembl	74_37	-1	known	frame_shift_ins	c.840_839	p.H281fs	1.000:1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF148	HGNC	ENSG00000235631				112	0	0	74	23	23.7113
UBN2	0	genome.wustl.edu	37	7	138968642	138968642	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	7	138968642	138968642	C	-	DEL	UBN2	ENST00000473989	human	ensembl	74_37	+1	known	frame_shift_del	c.2991	p.L999fs	0.981	NULL	NULL	-	no_errors	UBN2	HGNC	ENSG00000157741				99	0	0	74	19	20.4301
TAS2R38	0	genome.wustl.edu	37	7	141673000	141673001	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	7	141673000	141673001	-	A	INS	TAS2R38	ENST00000547270	human	ensembl	74_37	-1	known	frame_shift_ins	c.490_489	p.S163fs	0.000:0.000	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R38	HGNC	ENSG00000257138				93	0	0	45	17	27.4194
ATG9B	0	genome.wustl.edu	37	7	150721484	150721484	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	7	150721484	150721484	C	-	DEL	ATG9B	ENST00000377974	human	ensembl	74_37	-1	known	frame_shift_del	c.27	p.R10fs	0.511	NULL	pfam_Autophagy-rel_prot_9	-	no_errors	ATG9B	HGNC	ENSG00000181652				10	0	0	4	2	33.3333
SEPT7P2	0	genome.wustl.edu	37	7	45798706	45798706	+	RNA	DEL	G	G	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	7	45798706	45798706	G	-	DEL	SEPT7P2	ENST00000428414	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SEPT7P2	HGNC	ENSG00000214765				141	0	0	121	38	23.8994
STAG3L4	0	genome.wustl.edu	37	7	66785165	66785166	+	RNA	INS	-	-	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	7	66785165	66785166	-	A	INS	STAG3L4	ENST00000416602	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.030:0.062	-	-	-	no_errors	STAG3L4	HGNC	ENSG00000106610				45	0	0	44	11	20
ADAM28	0	genome.wustl.edu	37	8	24167473	24167473	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	8	24167473	24167473	A	-	DEL	ADAM28	ENST00000265769	human	ensembl	74_37	+1	known	frame_shift_del	c.217	p.N75fs	1.000	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM28	HGNC	ENSG00000042980				55	0	0	66	14	17.5
MOS	0	genome.wustl.edu	37	8	57025892	57025893	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	8	57025892	57025893	-	T	INS	MOS	ENST00000311923	human	ensembl	74_37	-1	known	frame_shift_ins	c.650_649	p.I217fs	1.000:1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MOS	HGNC	ENSG00000172680				68	0	0	55	16	22.5352
KIAA1429	0	genome.wustl.edu	37	8	95531563	95531563	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	8	95531563	95531563	A	-	DEL	KIAA1429	ENST00000297591	human	ensembl	74_37	-1	known	frame_shift_del	c.2163	p.F721fs	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	KIAA1429	HGNC	ENSG00000164944				68	0	0	56	24	30
TEX10	0	genome.wustl.edu	37	9	103066107	103066108	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	9	103066107	103066108	-	C	INS	TEX10	ENST00000374902	human	ensembl	74_37	-1	known	frame_shift_ins	c.2483_2482	p.V828fs	0.191:0.137	NULL	pfam_IPI1/TEX10,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	TEX10	HGNC	ENSG00000136891				52	0	0	46	6	11.5385
SMC2	0	genome.wustl.edu	37	9	106885501	106885501	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	9	106885501	106885501	A	-	DEL	SMC2	ENST00000286398	human	ensembl	74_37	+1	known	frame_shift_del	c.2245	p.T751fs	0.998	superfamily_P-loop_NTPase	pfam_RecF/RecN/SMC_N,pfam_SMC_hinge,superfamily_P-loop_NTPase,superfamily_SMC_hinge,smart_SMC_hinge	-	no_errors	SMC2	HGNC	ENSG00000136824				77	0	0	68	29	29.8969
C9orf114	0	genome.wustl.edu	37	9	131588302	131588302	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	9	131588302	131588302	T	-	DEL	C9orf114	ENST00000361256	human	ensembl	74_37	-1	known	frame_shift_del	c.638	p.K213fs	1.000	pfam_Put_MeTrfase,superfamily_NA-bd_OB-fold	pfam_Put_MeTrfase,superfamily_NA-bd_OB-fold	-	no_errors	C9orf114	HGNC	ENSG00000198917				76	0	0	56	33	37.0787
TUBB4B	0	genome.wustl.edu	37	9	140137961	140137963	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	9	140137961	140137963	GAG	-	DEL	TUBB4B	ENST00000340384	human	ensembl	74_37	+1	known	in_frame_del	c.1291_1293	p.E433in_frame_del	1.000:1.000:1.000	NULL	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB4B	HGNC	ENSG00000188229				146	0	0	114	24	17.3913
ERMP1	0	genome.wustl.edu	37	9	5801292	5801292	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	9	5801292	5801292	T	-	DEL	ERMP1	ENST00000339450	human	ensembl	74_37	-1	known	frame_shift_del	c.1951	p.T651fs	0.994	NULL	pfam_Peptidase_M28,pfam_Peptidase_M20	-	no_errors	ERMP1	HGNC	ENSG00000099219				65	0	0	59	17	22.3684
VPS13A	0	genome.wustl.edu	37	9	79955199	79955199	+	Splice_Site	DEL	G	G	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	9	79955199	79955199	G	-	DEL	VPS13A	ENST00000360280	human	ensembl	74_37	+1	known	splice_site_del	c.6879+1	e49+1	1.000	-	-	-	no_errors	VPS13A	HGNC	ENSG00000197969				85	0	0	58	29	33.3333
TLE1	0	genome.wustl.edu	37	9	84225192	84225192	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	9	84225192	84225192	G	-	DEL	TLE1	ENST00000376499	human	ensembl	74_37	-1	known	frame_shift_del	c.1274	p.P425fs	1.000	NULL	pfam_Groucho/TLE_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Groucho_enhance	-	no_errors	TLE1	HGNC	ENSG00000196781				35	0	0	32	8	20
ZNF484	0	genome.wustl.edu	37	9	95609713	95609713	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	9	95609713	95609713	T	-	DEL	ZNF484	ENST00000395506	human	ensembl	74_37	-1	known	frame_shift_del	c.1362	p.K454fs	0.935	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF484	HGNC	ENSG00000127081				67	0	0	36	16	30.7692
TMSB15B	0	genome.wustl.edu	37	X	103219168	103219169	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	103219168	103219169	-	A	INS	TMSB15B	ENST00000419165	human	ensembl	74_37	+1	known	frame_shift_ins	c.73_74	p.N27fs	1.000:1.000	pfam_Thymosin_b4,smart_Thymosin_b4,pirsf_Thymosin_b4_metazoa	pfam_Thymosin_b4,smart_Thymosin_b4,pirsf_Thymosin_b4_metazoa	-	no_errors	TMSB15B	HGNC	ENSG00000158427				126	0	0	69	29	29.5918
BCORL1	0	genome.wustl.edu	37	X	129147663	129147664	+	Frame_Shift_Ins	INS	-	-	TCAG			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	129147663	129147664	-	TCAG	INS	BCORL1	ENST00000303743	human	ensembl	74_37	+1	known	frame_shift_ins	c.915_916	p.P307fs	0.013:0.035	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCORL1	HGNC	ENSG00000085185				32	0	0	22	6	21.4286
CCDC160	0	genome.wustl.edu	37	X	133378875	133378875	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	133378875	133378875	T	-	DEL	CCDC160	ENST00000370809	human	ensembl	74_37	+1	known	frame_shift_del	c.45	p.F17fs	0.398	NULL	NULL	-	no_errors	CCDC160	HGNC	ENSG00000203952				22	0	0	9	9	50
HCFC1	0	genome.wustl.edu	37	X	153229688	153229689	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	153229688	153229689	-	T	INS	HCFC1	ENST00000310441	human	ensembl	74_37	-1	known	frame_shift_ins	c.390_389	p.N130fs	0.523:0.999	NULL	pfam_Kelch_2,pfam_Kelch_1,superfamily_Fibronectin_type3,smart_Fibronectin_type3	-	no_errors	HCFC1	HGNC	ENSG00000172534				136	0	0	112	7	5.88235
F8	0	genome.wustl.edu	37	X	154133263	154133263	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	154133263	154133263	G	-	DEL	F8	ENST00000360256	human	ensembl	74_37	-1	known	frame_shift_del	c.5409	p.F1804fs	1.000	superfamily_Cupredoxin	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F8	HGNC	ENSG00000185010				131	0	0	128	10	7.24638
POLA1	0	genome.wustl.edu	37	X	24830852	24830853	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	24830852	24830853	-	A	INS	POLA1	ENST00000379068	human	ensembl	74_37	+1	known	frame_shift_ins	c.3168_3169	p.K1059fs	1.000:1.000	pfam_DNA-dir_DNA_pol_B_multi_dom,tigrfam_DNA-dir_DNA_pol_B_pol2	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_Znf_DNA-dir_DNA_pol_B_alpha,pfam_DNA_pol_a_cat_su_N,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	-	no_errors	POLA1	HGNC	ENSG00000101868				111	0	0	76	34	30.9091
CFP	0	genome.wustl.edu	37	X	47489004	47489004	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	47489004	47489004	C	-	DEL	CFP	ENST00000247153	human	ensembl	74_37	-1	known	frame_shift_del	c.146	p.G49fs	0.000	NULL	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	CFP	HGNC	ENSG00000126759				13	0	0	4	2	33.3333
XIST	0	genome.wustl.edu	37	X	73049071	73049071	+	RNA	DEL	A	A	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	73049071	73049071	A	-	DEL	XIST	ENST00000433732	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.135	-	-	-	no_errors	XIST	HGNC	ENSG00000229807				43	0	0	15	11	42.3077
SHROOM2	0	genome.wustl.edu	37	X	9907303	9907303	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4280-01A-01D-1126-08	TCGA-BR-4280-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	41b158f4-026e-4f40-9175-f3e5c0b1f8ce	3fea064a-3d4a-4a19-a445-de5e616a5edd	X	9907303	9907303	C	-	DEL	SHROOM2	ENST00000380913	human	ensembl	74_37	+1	known	frame_shift_del	c.4208	p.K1405fs	1.000	pfam_ASD2	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM2	HGNC	ENSG00000146950				17	0	0	19	4	17.3913
