Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
NMNAT1	0	genome.wustl.edu	37	1	10042553	10042553	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	10042553	10042553	G	A	SNP	NMNAT1	ENST00000377205	human	ensembl	74_37	+1	known	missense	c.634	p.V212M	1.000	pfam_Cyt_trans-like,tigrfam_NAMN_adtrnsfrase	pfam_Cyt_trans-like,tigrfam_NAMN_adtrnsfrase	-	no_errors	NMNAT1	HGNC	ENSG00000173614				98	0	0	92	44	32.3529
CASZ1	0	genome.wustl.edu	37	1	10706296	10706296	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	10706296	10706296	C	T	SNP	CASZ1	ENST00000377022	human	ensembl	74_37	-1	known	silent	c.3585	p.T1195	0.996	smart_Znf_C2H2-like	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CASZ1	HGNC	ENSG00000130940				60	0	0	48	20	29.4118
KCNA2	0	genome.wustl.edu	37	1	111146149	111146149	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	111146149	111146149	C	T	SNP	KCNA2	ENST00000316361	human	ensembl	74_37	-1	known	missense	c.1256	p.R419Q	1.000	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.2,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv1.3,prints_2pore_dom_K_chnl,prints_K_chnl_volt-dep_Kv1.1	-	no_errors	KCNA2	HGNC	ENSG00000177301				87	0	0	69	34	33.0097
MTOR	0	genome.wustl.edu	37	1	11168277	11168277	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	11168277	11168277	G	A	SNP	MTOR	ENST00000361445	human	ensembl	74_37	-1	known	missense	c.7595	p.A2532V	1.000	pfam_FATC,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_DUF3385_TOR,pfam_Rapamycin-bd_dom,pfam_FATC,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,superfamily_Rapamycin-bd_dom,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	MTOR	HGNC	ENSG00000198793				80	0	0	77	32	29.3578
WNT2B	0	genome.wustl.edu	37	1	113033683	113033683	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	113033683	113033683	G	A	SNP	WNT2B	ENST00000369686	human	ensembl	74_37	+1	known	silent	c.105	p.A35	0.001	NULL	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt2	-	no_errors	WNT2B	HGNC	ENSG00000134245				21	0	0	24	9	27.2727
WNT2B	0	genome.wustl.edu	37	1	113051942	113051942	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	113051942	113051942	G	A	SNP	WNT2B	ENST00000369684	human	ensembl	74_37	+1	known	missense	c.58	p.A20T	0.998	NULL	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt2	-	no_errors	WNT2B	HGNC	ENSG00000134245				12	0	0	6	3	33.3333
SLC22A15	0	genome.wustl.edu	37	1	116609275	116609275	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	116609275	116609275	G	A	SNP	SLC22A15	ENST00000369503	human	ensembl	74_37	+1	known	silent	c.1500	p.S500	0.434	NULL	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A15	HGNC	ENSG00000163393				21	0	0	24	7	22.5806
IGSF3	0	genome.wustl.edu	37	1	117146451	117146451	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	117146451	117146451	C	T	SNP	IGSF3	ENST00000318837	human	ensembl	74_37	-1	known	silent	c.1479	p.S493	0.000	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	IGSF3	HGNC	ENSG00000143061				60	0	0	37	26	41.2698
TRIM45	0	genome.wustl.edu	37	1	117661189	117661189	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	117661189	117661189	A	G	SNP	TRIM45	ENST00000256649	human	ensembl	74_37	-1	known	missense	c.689	p.V230A	0.422	NULL	pfam_Filamin/ABP280_repeat-like,pfam_Znf_B-box,superfamily_Ig_E-set,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Filamin,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM45	HGNC	ENSG00000134253				70	0	0	54	9	14.2857
SPAG17	0	genome.wustl.edu	37	1	118634309	118634309	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	118634309	118634309	T	C	SNP	SPAG17	ENST00000336338	human	ensembl	74_37	-1	known	missense	c.1279	p.R427G	1.000	NULL	NULL	-	no_errors	SPAG17	HGNC	ENSG00000155761				30	0	0	37	13	26
SPAG17	0	genome.wustl.edu	37	1	118642346	118642346	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	118642346	118642346	C	T	SNP	SPAG17	ENST00000336338	human	ensembl	74_37	-1	known	missense	c.712	p.A238T	0.997	NULL	NULL	-	no_errors	SPAG17	HGNC	ENSG00000155761				84	0	0	72	43	37.3913
ADAM30	0	genome.wustl.edu	37	1	120437609	120437609	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	120437609	120437609	G	A	SNP	ADAM30	ENST00000369400	human	ensembl	74_37	-1	known	missense	c.1351	p.R451C	0.000	pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin,prints_Blood-coag_inhib_Disintegrin	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM30	HGNC	ENSG00000134249				130	0	0	130	44	25.2874
PPIAL4G	0	genome.wustl.edu	37	1	143767446	143767446	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	143767446	143767446	G	A	SNP	PPIAL4G	ENST00000419275	human	ensembl	74_37	-1	known	missense	c.403	p.R135C	1.000	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPIAL4G	HGNC	ENSG00000236334				187	0	0	258	20	7.19424
POLR3C	0	genome.wustl.edu	37	1	145608566	145608566	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	145608566	145608566	G	A	SNP	POLR3C	ENST00000334163	human	ensembl	74_37	-1	known	missense	c.241	p.R81W	0.984	NULL	pfam_RNA_pol_III_Rpc82_C,pfam_RNA_pol_III_RPC82-rel_HTH	-	no_errors	POLR3C	HGNC	ENSG00000186141				92	0	0	120	42	25.9259
SV2A	0	genome.wustl.edu	37	1	149882147	149882147	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	149882147	149882147	G	T	SNP	SV2A	ENST00000369146	human	ensembl	74_37	-1	known	missense	c.1064	p.P355H	1.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2	-	no_errors	SV2A	HGNC	ENSG00000159164				28	0	0	32	2	5.88235
PLEKHO1	0	genome.wustl.edu	37	1	150123100	150123100	+	Splice_Site	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	150123100	150123100	A	G	SNP	PLEKHO1	ENST00000025469	human	ensembl	74_37	+1	known	splice_site	c.31-2	e2-2	1.000	-	-	-	no_errors	PLEKHO1	HGNC	ENSG00000023902				67	0	0	86	5	5.49451
VPS72	0	genome.wustl.edu	37	1	151149142	151149142	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	151149142	151149142	C	T	SNP	VPS72	ENST00000368892	human	ensembl	74_37	-1	known	missense	c.1073	p.R358H	0.996	NULL	pfam_YL1,pfam_YL1_C	-	no_errors	VPS72	HGNC	ENSG00000163159				108	0	0	85	79	48.1707
ZNF687	0	genome.wustl.edu	37	1	151261166	151261166	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	151261166	151261166	C	T	SNP	ZNF687	ENST00000324048	human	ensembl	74_37	+1	known	missense	c.2278	p.R760C	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF687	HGNC	ENSG00000143373				87	0	0	59	76	56.2963
HRNR	0	genome.wustl.edu	37	1	152191472	152191472	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	152191472	152191472	G	A	SNP	HRNR	ENST00000368801	human	ensembl	74_37	-1	known	missense	c.2633	p.S878L	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	HRNR	HGNC	ENSG00000197915				113	0	0	105	32	23.3577
FLG	0	genome.wustl.edu	37	1	152275642	152275642	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	152275642	152275642	C	T	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.11720	p.R3907H	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				76	0	0	103	37	26.4286
FLG	0	genome.wustl.edu	37	1	152283084	152283084	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	152283084	152283084	G	A	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	silent	c.4278	p.S1426	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				266	0	0	195	179	47.861
FLG	0	genome.wustl.edu	37	1	152284999	152284999	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	152284999	152284999	C	T	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.2363	p.R788Q	0.000	prints_Filaggrin	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				384	0	0	344	153	30.7847
LCE2C	0	genome.wustl.edu	37	1	152648744	152648744	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	152648744	152648744	C	T	SNP	LCE2C	ENST00000368783	human	ensembl	74_37	+1	known	missense	c.253	p.R85W	0.000	NULL	NULL	-	no_errors	LCE2C	HGNC	ENSG00000187180				49	0	0	27	36	57.1429
UBAP2L	0	genome.wustl.edu	37	1	154229634	154229634	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	154229634	154229634	T	A	SNP	UBAP2L	ENST00000361546	human	ensembl	74_37	+1	known	missense	c.2253	p.S751R	1.000	NULL	pfam_DUF3697_Uba2,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBAP2L	HGNC	ENSG00000143569				83	0	0	95	6	5.94059
KAZN	0	genome.wustl.edu	37	1	15428216	15428216	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	15428216	15428216	G	T	SNP	KAZN	ENST00000376030	human	ensembl	74_37	+1	known	missense	c.1725	p.Q575H	1.000	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	KAZN	HGNC	ENSG00000189337				19	0	0	17	12	41.3793
ADAR	0	genome.wustl.edu	37	1	154557387	154557387	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	154557387	154557387	G	A	SNP	ADAR	ENST00000292205	human	ensembl	74_37	-1	known	silent	c.3705	p.Y1235	0.979	pfam_A_deamin,smart_A_deamin,pfscan_A_deamin	pfam_A_deamin,pfam_dsRNA_A_deaminase,pfam_dsRNA-bd_dom,smart_dsRNA_A_deaminase,smart_dsRNA-bd_dom,smart_A_deamin,pfscan_dsRNA-bd_dom,pfscan_dsRNA_A_deaminase,pfscan_A_deamin	-	no_errors	ADAR	HGNC	ENSG00000160710				84	0	0	46	72	61.0169
HCN3	0	genome.wustl.edu	37	1	155252423	155252423	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	155252423	155252423	G	A	SNP	HCN3	ENST00000368358	human	ensembl	74_37	+1	known	missense	c.500	p.R167H	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_N,pfam_Ion_trans_dom,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	HCN3	HGNC	ENSG00000143630				52	0	0	35	21	37.5
LMNA	0	genome.wustl.edu	37	1	156108451	156108451	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	156108451	156108451	G	A	SNP	LMNA	ENST00000368300	human	ensembl	74_37	+1	known	missense	c.1871	p.R624H	0.998	NULL	pfam_IF,pfam_Lamin_tail_dom,superfamily_Prefoldin	-	no_errors	LMNA	HGNC	ENSG00000160789				26	0	0	13	11	45.8333
CCT3	0	genome.wustl.edu	37	1	156303398	156303398	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	156303398	156303398	C	T	SNP	CCT3	ENST00000295688	human	ensembl	74_37	-1	known	missense	c.244	p.E82K	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,tigrfam_Chap_CCT_gamma	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_gamma	-	no_errors	CCT3	HGNC	ENSG00000163468				100	0	0	113	35	23.6486
PEAR1	0	genome.wustl.edu	37	1	156883740	156883740	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	156883740	156883740	G	C	SNP	PEAR1	ENST00000292357	human	ensembl	74_37	+1	known	missense	c.2810	p.G937A	0.000	NULL	pfam_EGF_laminin,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EMI_domain	-	no_errors	PEAR1	HGNC	ENSG00000187800				24	0	0	23	11	32.3529
OR10T2	0	genome.wustl.edu	37	1	158368816	158368816	+	Silent	SNP	A	A	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	158368816	158368816	A	C	SNP	OR10T2	ENST00000334438	human	ensembl	74_37	-1	known	silent	c.441	p.S147	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10T2	HGNC	ENSG00000186306				106	0	0	73	81	52.5974
SLAMF8	0	genome.wustl.edu	37	1	159799702	159799702	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	159799702	159799702	C	T	SNP	SLAMF8	ENST00000289707	human	ensembl	74_37	+1	known	silent	c.87	p.V29	0.482	NULL	pfscan_Ig-like_dom	-	no_errors	SLAMF8	HGNC	ENSG00000158714				124	1	0.8	130	17	11.5646
RSC1A1	0	genome.wustl.edu	37	1	15987413	15987413	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	15987413	15987413	G	A	SNP	RSC1A1	ENST00000345034	human	ensembl	74_37	+1	known	silent	c.1050	p.P350	0.994	NULL	superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	RSC1A1	HGNC	ENSG00000215695				50	0	0	46	16	25.8065
RPL31P11	0	genome.wustl.edu	37	1	161654742	161654742	+	RNA	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	161654742	161654742	C	T	SNP	RPL31P11	ENST00000426558	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RPL31P11	HGNC	ENSG00000213075				35	0	0	30	26	46.4286
HSD17B7	0	genome.wustl.edu	37	1	162762614	162762614	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	162762614	162762614	G	A	SNP	HSD17B7	ENST00000254521	human	ensembl	74_37	+1	known	silent	c.201	p.L67	0.257	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH	-	no_errors	HSD17B7	HGNC	ENSG00000132196				48	0	0	41	46	52.8736
PBX1	0	genome.wustl.edu	37	1	164815933	164815933	+	RNA	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	164815933	164815933	C	T	SNP	PBX1	ENST00000468104	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PBX1	HGNC	ENSG00000185630				55	0	0	73	22	23.1579
ARHGEF19	0	genome.wustl.edu	37	1	16525645	16525645	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	16525645	16525645	C	T	SNP	ARHGEF19	ENST00000270747	human	ensembl	74_37	-1	known	missense	c.2251	p.G751S	0.999	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF19	HGNC	ENSG00000142632				52	0	0	33	18	35.2941
NECAP2	0	genome.wustl.edu	37	1	16785456	16785456	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	16785456	16785456	G	A	SNP	NECAP2	ENST00000443980	human	ensembl	74_37	+1	known	missense	c.787	p.E263K	0.000	NULL	pfam_NECAP-1	-	no_errors	NECAP2	HGNC	ENSG00000157191				11	0	0	10	7	41.1765
ATP1B1	0	genome.wustl.edu	37	1	169100579	169100579	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	169100579	169100579	G	A	SNP	ATP1B1	ENST00000367815	human	ensembl	74_37	+1	known	missense	c.698	p.G233D	0.976	pfam_Na/K_ATPase_sub_beta,tigrfam_Na/K_ATPase_sub_beta	pfam_Na/K_ATPase_sub_beta,tigrfam_Na/K_ATPase_sub_beta	-	no_errors	ATP1B1	HGNC	ENSG00000143153				124	0	0	220	17	7.173
RC3H1	0	genome.wustl.edu	37	1	173912741	173912741	+	Silent	SNP	T	T	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	173912741	173912741	T	G	SNP	RC3H1	ENST00000258349	human	ensembl	74_37	-1	known	silent	c.2974	p.R992	1.000	NULL	pfam_Znf_CCCH,smart_Znf_RING,smart_Znf_CCCH,pfscan_Znf_RING	-	no_errors	RC3H1	HGNC	ENSG00000135870				54	0	0	33	23	41.0714
RC3H1	0	genome.wustl.edu	37	1	173953746	173953746	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	173953746	173953746	C	T	SNP	RC3H1	ENST00000258349	human	ensembl	74_37	-1	known	silent	c.243	p.Q81	1.000	NULL	pfam_Znf_CCCH,smart_Znf_RING,smart_Znf_CCCH,pfscan_Znf_RING	-	no_errors	RC3H1	HGNC	ENSG00000135870				36	0	0	49	21	30
PADI2	0	genome.wustl.edu	37	1	17431556	17431556	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	17431556	17431556	G	A	SNP	PADI2	ENST00000375486	human	ensembl	74_37	-1	known	silent	c.93	p.S31	0.242	pfam_PAD_N,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	pfam_PAD_C,pfam_Prot_Arg_deaminase_cen_dom,pfam_PAD_N,superfamily_Prot_Arg_deaminase_cen_dom,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	-	no_errors	PADI2	HGNC	ENSG00000117115				24	0	0	7	8	53.3333
XPR1	0	genome.wustl.edu	37	1	180775653	180775653	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	180775653	180775653	C	A	SNP	XPR1	ENST00000367590	human	ensembl	74_37	+1	known	missense	c.641	p.A214D	1.000	NULL	pfam_EXS_C,pfam_SPX_N	-	no_errors	XPR1	HGNC	ENSG00000143324				75	0	0	49	20	28.9855
ZNF648	0	genome.wustl.edu	37	1	182026636	182026636	+	Silent	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	182026636	182026636	A	G	SNP	ZNF648	ENST00000339948	human	ensembl	74_37	-1	novel	silent	c.510	p.N170	0.003	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF648	HGNC	ENSG00000179930				46	0	0	24	15	38.4615
C1orf21	0	genome.wustl.edu	37	1	184446659	184446659	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	184446659	184446659	G	A	SNP	C1orf21	ENST00000235307	human	ensembl	74_37	+1	known	missense	c.16	p.A6T	1.000	NULL	NULL	-	no_errors	C1orf21	HGNC	ENSG00000116667				52	0	0	36	26	41.9355
TPR	0	genome.wustl.edu	37	1	186313658	186313658	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	186313658	186313658	T	C	SNP	TPR	ENST00000367478	human	ensembl	74_37	-1	known	missense	c.3266	p.H1089R	1.000	pfam_TPR_MLP1_2	pfam_TPR_MLP1_2,superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	TPR	HGNC	ENSG00000047410				98	0	0	109	14	11.3821
PTGS2	0	genome.wustl.edu	37	1	186645044	186645044	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	186645044	186645044	G	A	SNP	PTGS2	ENST00000367468	human	ensembl	74_37	-1	known	nonsense	c.1243	p.Q415*	1.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_EG-like_dom,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	PTGS2	HGNC	ENSG00000073756				45	0	0	47	18	27.6923
PAX7	0	genome.wustl.edu	37	1	19062344	19062344	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	19062344	19062344	C	T	SNP	PAX7	ENST00000375375	human	ensembl	74_37	+1	known	silent	c.1374	p.A458	1.000	NULL	pfam_Paired_dom,pfam_Homeobox_dom,pfam_Pax7,superfamily_Homeodomain-like,smart_Paired_dom,smart_Homeobox_dom,prints_Paired_dom,pfscan_Homeobox_dom,pfscan_Paired_dom	-	no_errors	PAX7	HGNC	ENSG00000009709				60	0	0	25	16	39.0244
RGS2	0	genome.wustl.edu	37	1	192780201	192780201	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	192780201	192780201	C	A	SNP	RGS2	ENST00000235382	human	ensembl	74_37	+1	known	missense	c.365	p.T122N	1.000	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS2	HGNC	ENSG00000116741				210	1	0.473934	159	66	29.3333
B3GALT2	0	genome.wustl.edu	37	1	193149443	193149443	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	193149443	193149443	C	T	SNP	B3GALT2	ENST00000367434	human	ensembl	74_37	-1	known	missense	c.1250	p.R417H	1.000	NULL	pfam_Glyco_trans_31	-	no_errors	B3GALT2	HGNC	ENSG00000162630				75	0	0	82	26	24.0741
F13B	0	genome.wustl.edu	37	1	197031010	197031010	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	197031010	197031010	C	T	SNP	F13B	ENST00000367412	human	ensembl	74_37	-1	known	missense	c.355	p.A119T	0.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	F13B	HGNC	ENSG00000143278				32	0	0	36	26	41.9355
KIF21B	0	genome.wustl.edu	37	1	200974489	200974489	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	200974489	200974489	C	T	SNP	KIF21B	ENST00000422435	human	ensembl	74_37	-1	known	missense	c.679	p.A227T	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_P-loop_NTPase,superfamily_WD40_repeat_dom,superfamily_Prefoldin,smart_Kinesin_motor_dom,smart_WD40_repeat,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Kinesin_motor_dom	-	no_errors	KIF21B	HGNC	ENSG00000116852				57	0	0	36	17	32.0755
PKP1	0	genome.wustl.edu	37	1	201289420	201289420	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	201289420	201289420	C	T	SNP	PKP1	ENST00000263946	human	ensembl	74_37	+1	known	missense	c.1321	p.R441C	1.000	superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	PKP1	HGNC	ENSG00000081277				46	0	0	34	12	26.087
ADORA1	0	genome.wustl.edu	37	1	203098074	203098074	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	203098074	203098074	G	T	SNP	ADORA1	ENST00000309502	human	ensembl	74_37	+1	known	missense	c.105	p.K35N	0.997	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Adeno_A1_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Adenosn_rcpt,prints_GPCR_Rhodpsn,prints_Adeno_A1_rcpt	-	no_errors	ADORA1	HGNC	ENSG00000163485				104	0	0	81	34	29.5652
LAMB3	0	genome.wustl.edu	37	1	209811925	209811925	+	Silent	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	209811925	209811925	A	G	SNP	LAMB3	ENST00000356082	human	ensembl	74_37	-1	known	silent	c.252	p.N84	0.379	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB3	HGNC	ENSG00000196878				40	0	0	39	24	38.0952
SERTAD4	0	genome.wustl.edu	37	1	210415509	210415509	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	210415509	210415509	G	A	SNP	SERTAD4	ENST00000367012	human	ensembl	74_37	+1	known	missense	c.898	p.E300K	1.000	NULL	pfam_SERTA,pfscan_SERTA	-	no_errors	SERTAD4	HGNC	ENSG00000082497				68	0	0	59	26	30.5882
GPATCH2	0	genome.wustl.edu	37	1	217793680	217793680	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	217793680	217793680	C	T	SNP	GPATCH2	ENST00000366935	human	ensembl	74_37	-1	known	missense	c.218	p.R73Q	1.000	NULL	pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	GPATCH2	HGNC	ENSG00000092978				100	0	0	93	6	6.06061
RAB3GAP2	0	genome.wustl.edu	37	1	220369638	220369638	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	220369638	220369638	A	G	SNP	RAB3GAP2	ENST00000358951	human	ensembl	74_37	-1	known	missense	c.914	p.I305T	1.000	NULL	superfamily_WD40_repeat_dom	-	no_errors	RAB3GAP2	HGNC	ENSG00000118873				119	0	0	103	43	29.4521
HSPG2	0	genome.wustl.edu	37	1	22181934	22181934	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	22181934	22181934	C	T	SNP	HSPG2	ENST00000374695	human	ensembl	74_37	-1	known	missense	c.5860	p.G1954S	0.039	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_SEA_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA_dom,pfscan_Ig-like_dom,prints_LDrepeatLR_classA_rpt	-	no_errors	HSPG2	HGNC	ENSG00000142798				15	0	0	17	6	26.087
LBR	0	genome.wustl.edu	37	1	225594521	225594521	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	225594521	225594521	G	A	SNP	LBR	ENST00000272163	human	ensembl	74_37	-1	known	missense	c.1328	p.T443M	0.999	pfam_Ergosterol_biosynth_ERG4_ERG24	pfam_Ergosterol_biosynth_ERG4_ERG24,pfam_Lamin-B_rcpt_of_tudor,pfam_DUF1295,smart_Tudor	-	no_errors	LBR	HGNC	ENSG00000143815				44	0	0	42	8	16
RAB4A	0	genome.wustl.edu	37	1	229422273	229422273	+	Silent	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	229422273	229422273	T	C	SNP	RAB4A	ENST00000366690	human	ensembl	74_37	+1	known	silent	c.72	p.T24	0.999	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB4A	HGNC	ENSG00000168118				13	0	0	16	10	38.4615
ABCB10	0	genome.wustl.edu	37	1	229667403	229667403	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	229667403	229667403	T	G	SNP	ABCB10	ENST00000344517	human	ensembl	74_37	-1	known	missense	c.1415	p.E472A	0.994	superfamily_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB10	HGNC	ENSG00000135776				117	0	0	74	29	28.1553
URB2	0	genome.wustl.edu	37	1	229772399	229772399	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	229772399	229772399	A	C	SNP	URB2	ENST00000258243	human	ensembl	74_37	+1	known	missense	c.2039	p.Q680P	1.000	NULL	pfam_Urb2/Npa2_C	-	no_errors	URB2	HGNC	ENSG00000135763				238	0	0	187	104	35.7388
MORN1	0	genome.wustl.edu	37	1	2303936	2303936	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	2303936	2303936	G	A	SNP	MORN1	ENST00000378531	human	ensembl	74_37	-1	known	silent	c.729	p.H243	0.000	NULL	pfam_MORN,smart_MORN	-	no_errors	MORN1	HGNC	ENSG00000116151				39	0	0	27	9	25
FAM89A	0	genome.wustl.edu	37	1	231155559	231155559	+	RNA	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	231155559	231155559	C	T	SNP	FAM89A	ENST00000466258	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FAM89A	HGNC	ENSG00000182118				19	0	0	19	8	29.6296
EPHB2	0	genome.wustl.edu	37	1	23208938	23208938	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	23208938	23208938	G	A	SNP	EPHB2	ENST00000400191	human	ensembl	74_37	+1	known	missense	c.1390	p.G464S	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHB2	HGNC	ENSG00000133216				83	0	0	68	42	38.1818
SIPA1L2	0	genome.wustl.edu	37	1	232574902	232574902	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	232574902	232574902	G	A	SNP	SIPA1L2	ENST00000262861	human	ensembl	74_37	-1	known	missense	c.3983	p.A1328V	0.009	NULL	pfam_DUF3401,pfam_Rap_GAP_dom,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L2	HGNC	ENSG00000116991				39	0	0	24	8	25
NID1	0	genome.wustl.edu	37	1	236142400	236142400	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	236142400	236142400	C	T	SNP	NID1	ENST00000264187	human	ensembl	74_37	-1	known	missense	c.3517	p.V1173M	0.994	smart_LDLR_classB_rpt	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd_dom,superfamily_GFP,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_G2_nidogen/fibulin_G2F,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID1	HGNC	ENSG00000116962				42	0	0	29	9	23.6842
NID1	0	genome.wustl.edu	37	1	236154336	236154336	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	236154336	236154336	C	T	SNP	NID1	ENST00000264187	human	ensembl	74_37	-1	known	silent	c.2778	p.P926	0.000	NULL	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd_dom,superfamily_GFP,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_G2_nidogen/fibulin_G2F,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID1	HGNC	ENSG00000116962				22	0	0	16	9	36
ASAP3	0	genome.wustl.edu	37	1	23760793	23760793	+	Silent	SNP	G	G	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	23760793	23760793	G	T	SNP	ASAP3	ENST00000336689	human	ensembl	74_37	-1	known	silent	c.1905	p.P635	0.977	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ASAP3	HGNC	ENSG00000088280				87	0	0	59	33	35.8696
ZP4	0	genome.wustl.edu	37	1	238048857	238048857	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	238048857	238048857	C	T	SNP	ZP4	ENST00000366570	human	ensembl	74_37	-1	known	missense	c.994	p.G332S	0.000	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom	pfam_ZP_dom,pfam_P_trefoil,superfamily_P_trefoil,smart_P_trefoil,smart_ZP_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	ZP4	HGNC	ENSG00000116996				63	0	0	47	25	34.7222
KIF26B	0	genome.wustl.edu	37	1	245849621	245849621	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	245849621	245849621	C	T	SNP	KIF26B	ENST00000407071	human	ensembl	74_37	+1	known	silent	c.3336	p.G1112	0.001	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF26B	HGNC	ENSG00000162849				90	0	0	61	34	35.7895
OR2T8	0	genome.wustl.edu	37	1	248084867	248084867	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	248084867	248084867	T	C	SNP	OR2T8	ENST00000319968	human	ensembl	74_37	+1	known	missense	c.548	p.V183A	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T8	HGNC	ENSG00000177462				37	0	0	50	9	15.2542
OR14I1	0	genome.wustl.edu	37	1	248845531	248845531	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	248845531	248845531	G	A	SNP	OR14I1	ENST00000342623	human	ensembl	74_37	-1	known	silent	c.75	p.H25	0.000	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Olfact_rcpt	-	no_errors	OR14I1	HGNC	ENSG00000189181				62	0	0	47	25	34.7222
ZNF692	0	genome.wustl.edu	37	1	249149812	249149812	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	249149812	249149812	C	T	SNP	ZNF692	ENST00000451251	human	ensembl	74_37	-1	known	missense	c.919	p.A307T	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF692	HGNC	ENSG00000171163				36	0	0	25	12	32.4324
EXTL1	0	genome.wustl.edu	37	1	26357744	26357744	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	26357744	26357744	A	G	SNP	EXTL1	ENST00000374280	human	ensembl	74_37	+1	known	missense	c.1223	p.Y408C	1.000	NULL	pfam_HexNAc_Trfase_a,pfam_Exostosin	-	no_errors	EXTL1	HGNC	ENSG00000158008				38	0	0	31	18	36.7347
ARID1A	0	genome.wustl.edu	37	1	27106862	27106862	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	27106862	27106862	G	A	SNP	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	missense	c.6473	p.R2158Q	1.000	pfam_DUF3518,superfamily_ARM-type_fold	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713				83	0	0	62	28	31.1111
MATN1	0	genome.wustl.edu	37	1	31194535	31194535	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	31194535	31194535	C	T	SNP	MATN1	ENST00000373765	human	ensembl	74_37	-1	known	missense	c.158	p.R53Q	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Matrilin_coiled-coil_trimer,pfam_EGF-like_Ca-bd_dom,smart_VWF_A,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_VWF_A	-	no_errors	MATN1	HGNC	ENSG00000162510				80	0	0	74	38	33.9286
PUM1	0	genome.wustl.edu	37	1	31452917	31452917	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	31452917	31452917	G	A	SNP	PUM1	ENST00000426105	human	ensembl	74_37	-1	known	missense	c.1346	p.A449V	1.000	NULL	pfam_Pumilio_RNA-bd_rpt,superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt,pfscan_Pumilio_RNA-bd_rpt	-	no_errors	PUM1	HGNC	ENSG00000134644				21	0	0	11	8	42.1053
IQCC	0	genome.wustl.edu	37	1	32672879	32672879	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	32672879	32672879	G	A	SNP	IQCC	ENST00000537469	human	ensembl	74_37	+1	known	silent	c.837	p.A279	0.000	NULL	pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCC	HGNC	ENSG00000160051				96	0	0	72	50	40.9836
ARHGEF16	0	genome.wustl.edu	37	1	3395142	3395142	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	3395142	3395142	C	T	SNP	ARHGEF16	ENST00000378378	human	ensembl	74_37	+1	known	missense	c.1780	p.R594C	0.986	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_SH3_domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF16	HGNC	ENSG00000130762				30	0	0	23	13	36.1111
MEGF6	0	genome.wustl.edu	37	1	3431982	3431982	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	3431982	3431982	G	A	SNP	MEGF6	ENST00000356575	human	ensembl	74_37	-1	known	silent	c.714	p.D238	0.891	smart_EGF-like_Ca-bd_dom,smart_EG-like_dom	pfam_EGF_laminin,pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EMI_domain	-	no_errors	MEGF6	HGNC	ENSG00000162591				12	0	0	7	6	46.1538
GJA4	0	genome.wustl.edu	37	1	35260514	35260514	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	35260514	35260514	C	T	SNP	GJA4	ENST00000342280	human	ensembl	74_37	+1	known	missense	c.700	p.R234C	1.000	NULL	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin37	-	no_errors	GJA4	HGNC	ENSG00000187513				34	0	0	25	17	40.4762
NCDN	0	genome.wustl.edu	37	1	36026733	36026733	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	36026733	36026733	G	A	SNP	NCDN	ENST00000356090	human	ensembl	74_37	+1	known	silent	c.981	p.T327	0.001	NULL	NULL	-	no_errors	NCDN	HGNC	ENSG00000020129				12	0	0	11	7	38.8889
THRAP3	0	genome.wustl.edu	37	1	36757051	36757051	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	36757051	36757051	C	T	SNP	THRAP3	ENST00000354618	human	ensembl	74_37	+1	known	missense	c.1822	p.R608C	1.000	NULL	NULL	-	no_errors	THRAP3	HGNC	ENSG00000054118				59	0	0	45	26	36.6197
CEP104	0	genome.wustl.edu	37	1	3765295	3765295	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	3765295	3765295	C	T	SNP	CEP104	ENST00000378230	human	ensembl	74_37	-1	known	missense	c.164	p.R55Q	1.000	superfamily_Galactose-bd-like	superfamily_Galactose-bd-like,superfamily_ARM-type_fold	-	no_errors	CEP104	HGNC	ENSG00000116198				55	0	0	45	21	31.8182
DFFB	0	genome.wustl.edu	37	1	3789133	3789133	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	3789133	3789133	A	G	SNP	DFFB	ENST00000378209	human	ensembl	74_37	+1	known	missense	c.779	p.H260R	1.000	pfam_Apoptosis_DFF40	pfam_Apoptosis_DFF40,pfam_CIDE-N_dom,smart_CIDE-N_dom,pfscan_CIDE-N_dom	-	no_errors	DFFB	HGNC	ENSG00000169598				63	0	0	38	13	25.4902
MTF1	0	genome.wustl.edu	37	1	38288328	38288328	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	38288328	38288328	G	A	SNP	MTF1	ENST00000373036	human	ensembl	74_37	-1	known	missense	c.1232	p.T411I	0.997	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	MTF1	HGNC	ENSG00000188786				78	0	0	63	11	14.8649
MTF1	0	genome.wustl.edu	37	1	38305655	38305655	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	38305655	38305655	G	A	SNP	MTF1	ENST00000373036	human	ensembl	74_37	-1	known	missense	c.584	p.T195M	1.000	pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	MTF1	HGNC	ENSG00000188786				69	0	0	51	28	35.443
KIAA0754	0	genome.wustl.edu	37	1	39879412	39879412	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	39879412	39879412	G	A	SNP	KIAA0754	ENST00000530275	human	ensembl	74_37	+1	known	missense	c.3067	p.A1023T	0.020	NULL	NULL	-	no_errors	KIAA0754	HGNC	ENSG00000255103				23	0	0	17	11	39.2857
NT5C1A	0	genome.wustl.edu	37	1	40131856	40131856	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	40131856	40131856	C	T	SNP	NT5C1A	ENST00000235628	human	ensembl	74_37	-1	known	missense	c.188	p.R63H	1.000	NULL	pfam_5-nucleotidase	-	no_errors	NT5C1A	HGNC	ENSG00000116981				66	0	0	67	5	6.94444
MIR30E	0	genome.wustl.edu	37	1	41220094	41220094	+	RNA	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	41220094	41220094	G	A	SNP	MIR30E	ENST00000362104	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR30E	HGNC	ENSG00000198974				42	0	0	32	19	37.2549
KCNQ4	0	genome.wustl.edu	37	1	41304235	41304235	+	RNA	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	41304235	41304235	C	T	SNP	KCNQ4	ENST00000506017	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.011	-	-	-	no_errors	KCNQ4	HGNC	ENSG00000117013				18	0	0	14	13	48.1481
FOXJ3	0	genome.wustl.edu	37	1	42776750	42776750	+	Silent	SNP	T	T	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	42776750	42776750	T	A	SNP	FOXJ3	ENST00000361346	human	ensembl	74_37	-1	known	silent	c.15	p.G5	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXJ3	HGNC	ENSG00000198815				35	0	0	37	14	27.451
SZT2	0	genome.wustl.edu	37	1	43886645	43886645	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	43886645	43886645	C	T	SNP	SZT2	ENST00000562955	human	ensembl	74_37	+1	known	missense	c.1487	p.T496M	1.000	NULL	NULL	-	no_errors	SZT2	HGNC	ENSG00000198198				105	0	0	72	34	32.0755
PTPRF	0	genome.wustl.edu	37	1	44069662	44069662	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	44069662	44069662	C	T	SNP	PTPRF	ENST00000359947	human	ensembl	74_37	+1	known	missense	c.2839	p.R947C	0.999	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRF	HGNC	ENSG00000142949				60	0	0	31	18	36.7347
C1orf228	0	genome.wustl.edu	37	1	45155395	45155395	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	45155395	45155395	C	T	SNP	C1orf228	ENST00000458657	human	ensembl	74_37	+1	known	missense	c.26	p.A9V	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	C1orf228	HGNC	ENSG00000198520				11	0	0	6	6	50
TOE1	0	genome.wustl.edu	37	1	45809251	45809251	+	Silent	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	45809251	45809251	T	C	SNP	TOE1	ENST00000372090	human	ensembl	74_37	+1	known	silent	c.1410	p.P470	0.990	NULL	pfam_RNase_CAF1,pfam_Znf_CCCH,superfamily_RNaseH-like_dom	-	no_errors	TOE1	HGNC	ENSG00000132773				60	0	0	45	20	30.7692
TESK2	0	genome.wustl.edu	37	1	45813598	45813598	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	45813598	45813598	G	A	SNP	TESK2	ENST00000372086	human	ensembl	74_37	-1	known	silent	c.615	p.P205	0.973	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TESK2	HGNC	ENSG00000070759				81	0	0	40	19	32.2034
CCDC17	0	genome.wustl.edu	37	1	46088681	46088681	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	46088681	46088681	C	T	SNP	CCDC17	ENST00000343901	human	ensembl	74_37	-1	known	missense	c.506	p.R169Q	0.000	NULL	NULL	-	no_errors	CCDC17	HGNC	ENSG00000159588				18	0	0	12	4	25
GLIS1	0	genome.wustl.edu	37	1	54059810	54059810	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	54059810	54059810	G	A	SNP	GLIS1	ENST00000312233	human	ensembl	74_37	-1	known	missense	c.766	p.H256Y	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLIS1	HGNC	ENSG00000174332				27	0	0	20	7	25.9259
CHD5	0	genome.wustl.edu	37	1	6169955	6169955	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	6169955	6169955	G	A	SNP	CHD5	ENST00000262450	human	ensembl	74_37	-1	known	silent	c.5478	p.N1826	0.994	pfam_CHD_C2	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD5	HGNC	ENSG00000116254				53	0	0	40	16	28.5714
INADL	0	genome.wustl.edu	37	1	62503676	62503676	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	62503676	62503676	C	T	SNP	INADL	ENST00000371158	human	ensembl	74_37	+1	known	silent	c.3987	p.A1329	0.413	superfamily_PDZ	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_L27,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	INADL	HGNC	ENSG00000132849				78	0	0	79	29	26.8519
MIER1	0	genome.wustl.edu	37	1	67450349	67450349	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	67450349	67450349	A	C	SNP	MIER1	ENST00000401041	human	ensembl	74_37	+1	known	missense	c.1464	p.K488N	0.811	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	MIER1	HGNC	ENSG00000198160				89	0	0	94	25	21.0084
SERBP1	0	genome.wustl.edu	37	1	67880887	67880887	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	67880887	67880887	G	A	SNP	SERBP1	ENST00000370995	human	ensembl	74_37	-1	known	missense	c.1132	p.R378C	1.000	NULL	pfam_HABP4_PAIRBP1-bd	-	no_errors	SERBP1	HGNC	ENSG00000142864				57	0	0	37	17	31.4815
FPGT-TNNI3K	0	genome.wustl.edu	37	1	74957869	74957869	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	74957869	74957869	G	A	SNP	FPGT-TNNI3K	ENST00000557284	human	ensembl	74_37	+1	known	missense	c.2612	p.R871Q	1.000	NULL	pfam_Ankyrin_rpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_dom,prints_Ankyrin_rpt,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	FPGT-TNNI3K	HGNC	ENSG00000259030				125	0	0	108	52	32.5
C1orf173	0	genome.wustl.edu	37	1	75037295	75037295	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	75037295	75037295	C	T	SNP	C1orf173	ENST00000326665	human	ensembl	74_37	-1	known	missense	c.4099	p.E1367K	0.647	NULL	NULL	-	no_errors	C1orf173	HGNC	ENSG00000178965				102	0	0	69	41	37.2727
CAMTA1	0	genome.wustl.edu	37	1	7721916	7721916	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	7721916	7721916	C	T	SNP	CAMTA1	ENST00000303635	human	ensembl	74_37	+1	known	silent	c.795	p.T265	0.977	NULL	pfam_CG-1_dom,pfam_IPT,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA1	HGNC	ENSG00000171735				17	0	0	5	7	58.3333
FUBP1	0	genome.wustl.edu	37	1	78422353	78422353	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	78422353	78422353	A	G	SNP	FUBP1	ENST00000436586	human	ensembl	74_37	-1	known	missense	c.1672	p.W558R	1.000	NULL	pfam_KH_dom_type_1,pfam_KH_dom_type_2,pfam_DUF1897,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FUBP1	HGNC	ENSG00000162613				57	0	0	48	13	21.3115
PTGFR	0	genome.wustl.edu	37	1	78959195	78959195	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	78959195	78959195	G	A	SNP	PTGFR	ENST00000370757	human	ensembl	74_37	+1	known	missense	c.767	p.C256Y	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Prostanoid_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_PglndnF_rcpt,prints_Prostanoid_rcpt,prints_Thbox_rcpt,prints_GPCR_Rhodpsn	-	no_errors	PTGFR	HGNC	ENSG00000122420				51	0	0	46	12	20.6897
SLC45A1	0	genome.wustl.edu	37	1	8384692	8384692	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	8384692	8384692	C	T	SNP	SLC45A1	ENST00000377479	human	ensembl	74_37	+1	known	silent	c.405	p.Y135	0.995	superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A1	HGNC	ENSG00000162426				14	0	0	9	5	35.7143
RERE	0	genome.wustl.edu	37	1	8420774	8420774	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	8420774	8420774	C	T	SNP	RERE	ENST00000337907	human	ensembl	74_37	-1	known	silent	c.2793	p.P931	0.321	pfam_Atrophin-like	pfam_Atrophin-like,pfam_BAH_dom,pfam_ELM2_dom,pfam_Znf_GATA,superfamily_Homeodomain-like,smart_BAH_dom,smart_SANT/Myb,smart_Znf_GATA,pfscan_BAH_dom,pfscan_ELM2_dom	-	no_errors	RERE	HGNC	ENSG00000142599				11	0	0	13	4	23.5294
PKN2	0	genome.wustl.edu	37	1	89206691	89206691	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	89206691	89206691	G	A	SNP	PKN2	ENST00000370521	human	ensembl	74_37	+1	known	silent	c.69	p.P23	0.997	superfamily_HR1_rho-bd	pfam_Prot_kinase_dom,pfam_HR1_rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,superfamily_C2_dom,smart_HR1_rho-bd,smart_C2_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom	-	no_errors	PKN2	HGNC	ENSG00000065243				72	0	0	57	32	35.9551
CA6	0	genome.wustl.edu	37	1	9017324	9017324	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	9017324	9017324	G	A	SNP	CA6	ENST00000377443	human	ensembl	74_37	+1	known	missense	c.388	p.G130R	0.897	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA6	HGNC	ENSG00000131686				44	0	0	30	18	37.5
HFM1	0	genome.wustl.edu	37	1	91844741	91844741	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	91844741	91844741	C	T	SNP	HFM1	ENST00000370425	human	ensembl	74_37	-1	known	missense	c.1037	p.R346H	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	HFM1	HGNC	ENSG00000162669				41	0	0	27	17	38.6364
KIAA1107	0	genome.wustl.edu	37	1	92649446	92649446	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	92649446	92649446	G	A	SNP	KIAA1107	ENST00000409154	human	ensembl	74_37	+1	known	silent	c.3789	p.L1263	1.000	NULL	NULL	-	no_errors	KIAA1107	HGNC	ENSG00000069712				24	0	0	12	6	33.3333
EVI5	0	genome.wustl.edu	37	1	93029202	93029202	+	Silent	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	93029202	93029202	A	G	SNP	EVI5	ENST00000543509	human	ensembl	74_37	-1	known	silent	c.2148	p.H716	1.000	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	EVI5	HGNC	ENSG00000067208				88	0	0	77	38	33.0435
TMEM201	0	genome.wustl.edu	37	1	9656943	9656943	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	9656943	9656943	C	T	SNP	TMEM201	ENST00000340381	human	ensembl	74_37	+1	known	silent	c.261	p.P87	0.021	pfam_Ima1_N	pfam_DUF2448,pfam_Ima1_N	-	no_errors	TMEM201	HGNC	ENSG00000188807				51	0	0	27	17	38.6364
CNNM1	0	genome.wustl.edu	37	10	101090324	101090324	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	101090324	101090324	C	T	SNP	CNNM1	ENST00000356713	human	ensembl	74_37	+1	known	missense	c.1180	p.R394W	1.000	pfam_DUF21	pfam_DUF21,pfam_CBS_dom	-	no_errors	CNNM1	HGNC	ENSG00000119946				19	0	0	9	4	30.7692
LBX1	0	genome.wustl.edu	37	10	102987489	102987489	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	102987489	102987489	C	T	SNP	LBX1	ENST00000370193	human	ensembl	74_37	-1	known	silent	c.384	p.S128	0.346	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif	-	no_errors	LBX1	HGNC	ENSG00000138136				45	0	0	39	14	26.4151
POLL	0	genome.wustl.edu	37	10	103340084	103340084	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	103340084	103340084	G	A	SNP	POLL	ENST00000299206	human	ensembl	74_37	-1	known	silent	c.1284	p.V428	0.706	smart_DNA-dir_DNA_pol_X,prints_DNA_pol_X_beta-like,prints_DNA_pol_X	pfam_DNA_pol_lambd_fingers_domain,superfamily_DNA_pol_b-like_N,superfamily_DNA_pol_lambd_fingers_domain,superfamily_BRCT_dom,smart_DNA-dir_DNA_pol_X,pfscan_BRCT_dom,prints_DNA_pol_X_beta-like,prints_DNA_pol_X	-	no_errors	POLL	HGNC	ENSG00000166169				94	0	0	66	27	29.0323
CNNM2	0	genome.wustl.edu	37	10	104679333	104679333	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	104679333	104679333	C	T	SNP	CNNM2	ENST00000369878	human	ensembl	74_37	+1	known	missense	c.1096	p.R366W	1.000	pfam_DUF21	pfam_DUF21,superfamily_cNMP-bd-like	-	no_errors	CNNM2	HGNC	ENSG00000148842				87	0	0	53	26	32.9114
SH3PXD2A	0	genome.wustl.edu	37	10	105361883	105361883	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	105361883	105361883	C	T	SNP	SH3PXD2A	ENST00000369774	human	ensembl	74_37	-1	known	missense	c.3092	p.R1031H	0.973	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Phox,superfamily_Phox,superfamily_SH3_domain,smart_Phox,smart_SH3_domain,pfscan_Phox,pfscan_SH3_domain	-	no_errors	SH3PXD2A	HGNC	ENSG00000107957				63	0	0	40	24	37.5
COL17A1	0	genome.wustl.edu	37	10	105824282	105824282	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	105824282	105824282	G	A	SNP	COL17A1	ENST00000353479	human	ensembl	74_37	-1	known	missense	c.680	p.A227V	0.504	NULL	pfam_Collagen	-	no_errors	COL17A1	HGNC	ENSG00000065618				21	0	0	15	7	31.8182
ATRNL1	0	genome.wustl.edu	37	10	117045787	117045787	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	117045787	117045787	T	A	SNP	ATRNL1	ENST00000355044	human	ensembl	74_37	+1	known	missense	c.2295	p.S765R	1.000	superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_Kelch_1,pfam_Kelch_2,pfam_Plexin_repeat,pfam_CUB_dom,pfam_EGF_extracell,superfamily_C-type_lectin_fold,superfamily_CUB_dom,superfamily_Plexin-like_fold,smart_EG-like_dom,smart_CUB_dom,smart_Plexin-like_fold,smart_C-type_lectin,smart_EGF_laminin,pfscan_CUB_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_C-type_lectin	-	no_errors	ATRNL1	HGNC	ENSG00000107518				43	0	0	48	4	7.69231
UPF2	0	genome.wustl.edu	37	10	11990443	11990443	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	11990443	11990443	T	A	SNP	UPF2	ENST00000356352	human	ensembl	74_37	-1	known	missense	c.3099	p.E1033D	0.998	NULL	pfam_MIF4G-like_typ-3,pfam_Up-fram_suppressor-2,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	-	no_errors	UPF2	HGNC	ENSG00000151461				32	0	0	15	29	65.9091
INPP5F	0	genome.wustl.edu	37	10	121557041	121557041	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	121557041	121557041	T	G	SNP	INPP5F	ENST00000361976	human	ensembl	74_37	+1	known	missense	c.937	p.L313V	1.000	pfam_Syja_N,pfscan_Syja_N	pfam_Syja_N,pfam_Inositol_phosphatase,pfscan_Syja_N	-	no_errors	INPP5F	HGNC	ENSG00000198825				26	0	0	15	9	37.5
FGFR2	0	genome.wustl.edu	37	10	123325038	123325038	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	123325038	123325038	G	A	SNP	FGFR2	ENST00000457416	human	ensembl	74_37	-1	known	missense	c.290	p.A97V	1.000	pirsf_FGF_rcpt_fam,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pirsf_FGF_rcpt_fam,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	FGFR2	HGNC	ENSG00000066468				76	0	0	73	23	23.9583
HMX3	0	genome.wustl.edu	37	10	124896865	124896865	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	124896865	124896865	G	A	SNP	HMX3	ENST00000357878	human	ensembl	74_37	+1	known	missense	c.692	p.R231H	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HMX3	HGNC	ENSG00000188620				20	0	0	12	5	29.4118
CTBP2	0	genome.wustl.edu	37	10	126727703	126727703	+	RNA	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	126727703	126727703	G	A	SNP	CTBP2	ENST00000460976	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CTBP2	HGNC	ENSG00000175029				19	0	0	20	11	35.4839
DOCK1	0	genome.wustl.edu	37	10	128836060	128836060	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	128836060	128836060	G	A	SNP	DOCK1	ENST00000280333	human	ensembl	74_37	+1	known	missense	c.1927	p.D643N	0.997	superfamily_ARM-type_fold	pfam_DOCK_C,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,superfamily_Cyt_c-like_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK1	HGNC	ENSG00000150760				12	0	0	13	5	27.7778
FAM196A	0	genome.wustl.edu	37	10	128974539	128974539	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	128974539	128974539	G	A	SNP	FAM196A	ENST00000522781	human	ensembl	74_37	-1	known	missense	c.121	p.R41W	0.986	NULL	NULL	-	no_errors	FAM196A	HGNC	ENSG00000188916				98	0	0	74	43	36.7521
FAM196A	0	genome.wustl.edu	37	10	128974569	128974569	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	128974569	128974569	C	T	SNP	FAM196A	ENST00000522781	human	ensembl	74_37	-1	known	missense	c.91	p.A31T	0.872	NULL	NULL	-	no_errors	FAM196A	HGNC	ENSG00000188916				99	0	0	86	34	28.3333
NKX6-2	0	genome.wustl.edu	37	10	134598438	134598438	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	134598438	134598438	G	A	SNP	NKX6-2	ENST00000368592	human	ensembl	74_37	-1	known	silent	c.816	p.G272	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	NKX6-2	HGNC	ENSG00000148826				11	0	0	11	4	26.6667
CUBN	0	genome.wustl.edu	37	10	16893340	16893340	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	16893340	16893340	A	G	SNP	CUBN	ENST00000377833	human	ensembl	74_37	-1	known	missense	c.9557	p.V3186A	0.006	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611				63	0	0	55	8	12.6984
CUBN	0	genome.wustl.edu	37	10	17147455	17147455	+	Splice_Site	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	17147455	17147455	C	T	SNP	CUBN	ENST00000377833	human	ensembl	74_37	-1	known	splice_site	c.1230+1	e11+1	1.000	-	-	-	no_errors	CUBN	HGNC	ENSG00000107611				87	0	0	82	35	29.9145
VIM	0	genome.wustl.edu	37	10	17278320	17278320	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	17278320	17278320	T	C	SNP	VIM	ENST00000224237	human	ensembl	74_37	+1	known	missense	c.1301	p.V434A	0.997	NULL	pfam_IF,pfam_Intermed_filament_DNA-bd,superfamily_Prefoldin	-	no_errors	VIM	HGNC	ENSG00000026025				157	0	0	136	67	33.0049
GPR158	0	genome.wustl.edu	37	10	25887748	25887748	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	25887748	25887748	C	T	SNP	GPR158	ENST00000376351	human	ensembl	74_37	+1	known	missense	c.3193	p.R1065C	0.014	NULL	pfam_GPCR_3_C,pfscan_GPCR_3_C	-	no_errors	GPR158	HGNC	ENSG00000151025				132	0	0	76	36	32.1429
SVIL	0	genome.wustl.edu	37	10	29839766	29839766	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	29839766	29839766	G	A	SNP	SVIL	ENST00000355867	human	ensembl	74_37	-1	known	missense	c.587	p.P196L	0.104	NULL	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin/Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Villin/Gelsolin	-	no_errors	SVIL	HGNC	ENSG00000197321				91	0	0	53	25	32.0513
PFKP	0	genome.wustl.edu	37	10	3155672	3155672	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	3155672	3155672	G	A	SNP	PFKP	ENST00000381125	human	ensembl	74_37	+1	known	missense	c.1333	p.A445T	0.999	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,tigrfam_6-phosphofructokinase_euk	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,prints_Phosphofructokinase,tigrfam_6-phosphofructokinase_euk	-	no_errors	PFKP	HGNC	ENSG00000067057				19	0	0	11	13	54.1667
CREM	0	genome.wustl.edu	37	10	35500750	35500750	+	RNA	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	35500750	35500750	T	C	SNP	CREM	ENST00000469517	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CREM	HGNC	ENSG00000095794				53	0	0	50	17	25.3731
SLC18A3	0	genome.wustl.edu	37	10	50819067	50819067	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	50819067	50819067	C	T	SNP	SLC18A3	ENST00000374115	human	ensembl	74_37	+1	known	missense	c.281	p.T94M	0.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC18A3	HGNC	ENSG00000187714				37	0	0	20	10	33.3333
PCDH15	0	genome.wustl.edu	37	10	55782869	55782869	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	55782869	55782869	C	T	SNP	PCDH15	ENST00000320301	human	ensembl	74_37	-1	known	missense	c.2309	p.S770N	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275				64	0	0	58	25	30.1205
FAM13C	0	genome.wustl.edu	37	10	61029761	61029761	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	61029761	61029761	T	G	SNP	FAM13C	ENST00000373868	human	ensembl	74_37	-1	known	missense	c.701	p.N234T	1.000	NULL	NULL	-	no_errors	FAM13C	HGNC	ENSG00000148541				41	0	0	29	17	36.9565
ANK3	0	genome.wustl.edu	37	10	61835974	61835974	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	61835974	61835974	C	T	SNP	ANK3	ENST00000280772	human	ensembl	74_37	-1	known	silent	c.4665	p.A1555	0.253	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150				161	0	0	149	71	32.2727
MYPN	0	genome.wustl.edu	37	10	69926240	69926240	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	69926240	69926240	G	A	SNP	MYPN	ENST00000358913	human	ensembl	74_37	+1	known	missense	c.1790	p.R597H	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MYPN	HGNC	ENSG00000138347				47	0	0	38	24	38.7097
TET1	0	genome.wustl.edu	37	10	70450964	70450964	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	70450964	70450964	C	T	SNP	TET1	ENST00000373644	human	ensembl	74_37	+1	known	missense	c.5804	p.T1935M	0.003	NULL	pfam_Znf_CXXC,pfscan_Znf_CXXC	-	no_errors	TET1	HGNC	ENSG00000138336				93	0	0	64	51	44.3478
SRGN	0	genome.wustl.edu	37	10	70856875	70856875	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	70856875	70856875	C	T	SNP	SRGN	ENST00000242465	human	ensembl	74_37	+1	known	missense	c.115	p.R39C	0.905	pfam_Serglycin	pfam_Serglycin	-	no_errors	SRGN	HGNC	ENSG00000122862				34	0	0	37	21	36.2069
HK1	0	genome.wustl.edu	37	10	71124621	71124621	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	71124621	71124621	C	T	SNP	HK1	ENST00000448642	human	ensembl	74_37	+1	known	missense	c.563	p.T188M	1.000	pfam_Hexokinase_N	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	HK1	HGNC	ENSG00000156515				70	0	0	47	15	24.1935
HK1	0	genome.wustl.edu	37	10	71142254	71142254	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	71142254	71142254	G	A	SNP	HK1	ENST00000448642	human	ensembl	74_37	+1	known	missense	c.1382	p.R461H	1.000	pfam_Hexokinase_C	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	HK1	HGNC	ENSG00000156515				73	0	0	44	31	41.3333
CDH23	0	genome.wustl.edu	37	10	73491893	73491893	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	73491893	73491893	G	A	SNP	CDH23	ENST00000224721	human	ensembl	74_37	+1	putative	missense	c.3880	p.A1294T	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH23	HGNC	ENSG00000107736				54	0	0	36	12	25
CDH23	0	genome.wustl.edu	37	10	73572286	73572286	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	73572286	73572286	G	A	SNP	CDH23	ENST00000398788	human	ensembl	74_37	+1	known	missense	c.2710	p.A904T	0.952	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH23	HGNC	ENSG00000107736				66	0	0	49	26	34.6667
ENSG00000272599	0	genome.wustl.edu	37	10	74885039	74885039	+	RNA	SNP	C	C	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	74885039	74885039	C	A	SNP	ENSG00000272599	ENST00000608444	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP11-152N13.16	Clone_based_vega_gene	ENSG00000272599				71	0	0	61	19	23.75
ITIH5	0	genome.wustl.edu	37	10	7608295	7608295	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	7608295	7608295	C	T	SNP	ITIH5	ENST00000256861	human	ensembl	74_37	-1	known	missense	c.2225	p.R742H	1.000	pfam_ITI_HC_C	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH5	HGNC	ENSG00000123243				34	0	0	40	5	11.1111
ITIH5	0	genome.wustl.edu	37	10	7627891	7627891	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	7627891	7627891	A	T	SNP	ITIH5	ENST00000256861	human	ensembl	74_37	-1	known	missense	c.1081	p.Y361N	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH5	HGNC	ENSG00000123243				52	0	0	52	6	10.3448
ZMIZ1	0	genome.wustl.edu	37	10	80968205	80968205	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	80968205	80968205	C	T	SNP	ZMIZ1	ENST00000334512	human	ensembl	74_37	+1	known	missense	c.173	p.T58M	1.000	NULL	pfam_Znf_MIZ,pfscan_Znf_MIZ	-	no_errors	ZMIZ1	HGNC	ENSG00000108175				24	0	0	10	5	33.3333
CDHR1	0	genome.wustl.edu	37	10	85968128	85968128	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	85968128	85968128	G	A	SNP	CDHR1	ENST00000372117	human	ensembl	74_37	+1	known	missense	c.1162	p.D388N	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDHR1	HGNC	ENSG00000148600				31	0	0	29	15	34.0909
CDHR1	0	genome.wustl.edu	37	10	85970853	85970853	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	85970853	85970853	G	A	SNP	CDHR1	ENST00000372117	human	ensembl	74_37	+1	known	missense	c.1417	p.D473N	0.998	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDHR1	HGNC	ENSG00000148600				99	0	0	73	26	26.2626
LDB3	0	genome.wustl.edu	37	10	88428474	88428474	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	88428474	88428474	G	T	SNP	LDB3	ENST00000429277	human	ensembl	74_37	+1	known	missense	c.26	p.G9V	1.000	pfam_PDZ,superfamily_PDZ,pfscan_PDZ	pfam_Znf_LIM,pfam_PDZ,superfamily_PDZ,smart_PDZ,smart_ZASP,smart_Znf_LIM,pfscan_Znf_LIM,pfscan_PDZ	-	no_errors	LDB3	HGNC	ENSG00000122367				38	0	0	29	19	39.5833
MMRN2	0	genome.wustl.edu	37	10	88703011	88703011	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	88703011	88703011	G	A	SNP	MMRN2	ENST00000372027	human	ensembl	74_37	-1	known	silent	c.1530	p.D510	0.007	superfamily_tRNA-bd_arm	pfam_C1q,pfam_EMI_domain,superfamily_Tumour_necrosis_fac-like_dom,superfamily_tRNA-bd_arm,smart_C1q,prints_C1q,pfscan_C1q,pfscan_EMI_domain	-	no_errors	MMRN2	HGNC	ENSG00000173269				46	0	0	24	8	25
ENSG00000271880	0	genome.wustl.edu	37	10	88768422	88768422	+	RNA	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	88768422	88768422	C	T	SNP	ENSG00000271880	ENST00000433214	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.987	-	-	-	no_errors	RP11-96C23.5	Clone_based_vega_gene	ENSG00000271880				315	0	0	267	107	28.6096
ANKRD22	0	genome.wustl.edu	37	10	90591679	90591679	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	90591679	90591679	C	T	SNP	ANKRD22	ENST00000371930	human	ensembl	74_37	-1	known	silent	c.126	p.T42	0.299	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD22	HGNC	ENSG00000152766				280	0	0	183	92	33.4545
ACTA2	0	genome.wustl.edu	37	10	90701549	90701549	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	90701549	90701549	G	A	SNP	ACTA2	ENST00000224784	human	ensembl	74_37	-1	known	silent	c.447	p.R149	0.869	pfam_Actin-related,smart_Actin-related,prints_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTA2	HGNC	ENSG00000107796				34	0	0	31	12	27.907
KIF20B	0	genome.wustl.edu	37	10	91483813	91483813	+	Silent	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	91483813	91483813	T	C	SNP	KIF20B	ENST00000416354	human	ensembl	74_37	+1	known	silent	c.1815	p.V605	0.978	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF20B	HGNC	ENSG00000138182				100	0	0	81	40	33.0579
PCGF5	0	genome.wustl.edu	37	10	92982626	92982626	+	RNA	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	92982626	92982626	C	T	SNP	PCGF5	ENST00000490164	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PCGF5	HGNC	ENSG00000180628				51	0	0	51	18	26.087
BTAF1	0	genome.wustl.edu	37	10	93744029	93744029	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	93744029	93744029	C	T	SNP	BTAF1	ENST00000265990	human	ensembl	74_37	+1	known	silent	c.2295	p.D765	1.000	pfam_DUF3535,superfamily_ARM-type_fold	pfam_DUF3535,pfam_SNF2_N,pfam_HEAT,pfam_Helicase_C,superfamily_ARM-type_fold,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	BTAF1	HGNC	ENSG00000095564				38	0	0	32	10	23.8095
MYOF	0	genome.wustl.edu	37	10	95069835	95069835	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	95069835	95069835	C	T	SNP	MYOF	ENST00000359263	human	ensembl	74_37	-1	known	missense	c.6089	p.G2030D	0.763	NULL	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_dom,smart_C2_dom,smart_Peroxin/Ferlin,pfscan_C2_dom	-	no_errors	MYOF	HGNC	ENSG00000138119				58	0	0	40	19	32.2034
PDE6C	0	genome.wustl.edu	37	10	95394529	95394529	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	95394529	95394529	C	T	SNP	PDE6C	ENST00000371447	human	ensembl	74_37	+1	known	silent	c.1134	p.D378	0.997	pfam_GAF,smart_GAF	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE6C	HGNC	ENSG00000095464				54	0	0	32	21	39.6226
SORBS1	0	genome.wustl.edu	37	10	97096789	97096789	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	97096789	97096789	C	T	SNP	SORBS1	ENST00000361941	human	ensembl	74_37	-1	known	missense	c.3128	p.R1043H	0.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Sorb,superfamily_SH3_domain,smart_Sorb,smart_SH3_domain,pfscan_Sorb,pfscan_SH3_domain	-	no_errors	SORBS1	HGNC	ENSG00000095637				49	0	0	52	22	29.7297
ALDH18A1	0	genome.wustl.edu	37	10	97397115	97397115	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	97397115	97397115	G	A	SNP	ALDH18A1	ENST00000371224	human	ensembl	74_37	-1	known	missense	c.382	p.R128C	1.000	pfam_Asp/Glu/Uridylate_kinase,superfamily_Asp/Glu/Uridylate_kinase,pirsf_P5_carboxy_syn,tigrfam_P5_carboxy_syn	pfam_Asp/Glu/Uridylate_kinase,pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,superfamily_Asp/Glu/Uridylate_kinase,pirsf_P5_carboxy_syn,prints_Glu/AcGlu_kinase,tigrfam_P5_carboxy_syn,tigrfam_G-glutamylP_reductase	-	no_errors	ALDH18A1	HGNC	ENSG00000059573				54	0	0	29	19	39.5833
SLIT1	0	genome.wustl.edu	37	10	98764573	98764573	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	98764573	98764573	G	A	SNP	SLIT1	ENST00000266058	human	ensembl	74_37	-1	known	missense	c.3587	p.T1196M	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Leu-rich_rpt,pfam_Laminin_G,pfam_EG-like_dom,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl_sf,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT1	HGNC	ENSG00000187122				57	0	0	27	15	35.7143
RRP12	0	genome.wustl.edu	37	10	99141494	99141494	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	99141494	99141494	G	A	SNP	RRP12	ENST00000370992	human	ensembl	74_37	-1	known	missense	c.1298	p.T433I	0.003	superfamily_ARM-type_fold	pfam_Uncharacterised_NUC173,superfamily_ARM-type_fold	-	no_errors	RRP12	HGNC	ENSG00000052749				50	0	0	38	20	34.4828
HOGA1	0	genome.wustl.edu	37	10	99358872	99358872	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	99358872	99358872	G	A	SNP	HOGA1	ENST00000370646	human	ensembl	74_37	+1	known	missense	c.367	p.V123I	0.023	pfam_DapA-like	pfam_DapA-like,prints_DapA-like	-	no_errors	HOGA1	HGNC	ENSG00000241935				73	0	0	72	29	28.7129
CRTAC1	0	genome.wustl.edu	37	10	99695979	99695979	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	99695979	99695979	G	A	SNP	CRTAC1	ENST00000370597	human	ensembl	74_37	-1	known	silent	c.369	p.D123	0.970	NULL	pfam_FG-GAP,pfam_UnbV_ASPIC,pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom	-	no_errors	CRTAC1	HGNC	ENSG00000095713				40	0	0	32	22	40.7407
MUC6	0	genome.wustl.edu	37	11	1017547	1017547	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	1017547	1017547	G	A	SNP	MUC6	ENST00000421673	human	ensembl	74_37	-1	known	missense	c.5254	p.H1752Y	0.232	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	MUC6	HGNC	ENSG00000184956				950	0	0	1096	94	7.89916
KIAA1377	0	genome.wustl.edu	37	11	101834523	101834523	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	101834523	101834523	G	A	SNP	KIAA1377	ENST00000263468	human	ensembl	74_37	+1	known	silent	c.2757	p.P919	0.000	NULL	NULL	-	no_errors	KIAA1377	HGNC	ENSG00000110318				125	0	0	145	15	9.375
DYNC2H1	0	genome.wustl.edu	37	11	103058206	103058206	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	103058206	103058206	G	A	SNP	DYNC2H1	ENST00000398093	human	ensembl	74_37	+1	known	missense	c.7031	p.R2344H	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240				121	0	0	144	13	8.28025
ATM	0	genome.wustl.edu	37	11	108098419	108098419	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	108098419	108098419	G	A	SNP	ATM	ENST00000278616	human	ensembl	74_37	+1	known	missense	c.68	p.R23Q	1.000	pfam_TAN	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311				64	0	0	51	28	35.443
EXPH5	0	genome.wustl.edu	37	11	108385068	108385068	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	108385068	108385068	A	C	SNP	EXPH5	ENST00000265843	human	ensembl	74_37	-1	known	missense	c.1166	p.L389R	0.001	NULL	superfamily_Znf_FYVE_PHD,pfscan_Znf_FYVE-typ	-	no_errors	EXPH5	HGNC	ENSG00000110723				167	0	0	145	65	30.9524
RDX	0	genome.wustl.edu	37	11	110108291	110108291	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	110108291	110108291	G	A	SNP	RDX	ENST00000530749	human	ensembl	74_37	-1	known	missense	c.1177	p.R393C	1.000	pirsf_ERM,pfam_ERM_C_dom	pirsf_ERM,pfam_ERM_C_dom,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,superfamily_Moesin_tail,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Band_41_domain,prints_Ez/rad/moesin_like,prints_Band_41_fam,pfscan_FERM_domain	-	no_errors	RDX	HGNC	ENSG00000137710				67	0	0	44	25	36.2319
CSNK2A3	0	genome.wustl.edu	37	11	11374576	11374576	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	11374576	11374576	C	T	SNP	CSNK2A3	ENST00000528848	human	ensembl	74_37	-1	novel	missense	c.91	p.V31M	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CSNK2A3	HGNC	ENSG00000254598				50	0	0	61	32	34.4086
HTR3B	0	genome.wustl.edu	37	11	113803030	113803030	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	113803030	113803030	C	T	SNP	HTR3B	ENST00000260191	human	ensembl	74_37	+1	known	missense	c.388	p.P130S	0.991	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_5HT3_rcpt,prints_5HT3_rcpt_A,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_5HT3_rcpt_B,prints_5HT3_rcpt,prints_Neur_channel,prints_5HT3_rcpt_A,tigrfam_Neur_channel	-	no_errors	HTR3B	HGNC	ENSG00000149305				125	0	0	97	36	27.0677
CADM1	0	genome.wustl.edu	37	11	115088648	115088648	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	115088648	115088648	G	A	SNP	CADM1	ENST00000452722	human	ensembl	74_37	-1	known	missense	c.785	p.A262V	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like_dom	-	no_errors	CADM1	HGNC	ENSG00000182985				68	0	0	55	21	27.6316
DSCAML1	0	genome.wustl.edu	37	11	117335741	117335741	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	117335741	117335741	T	C	SNP	DSCAML1	ENST00000321322	human	ensembl	74_37	-1	known	missense	c.3362	p.Q1121R	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DSCAML1	HGNC	ENSG00000177103				79	0	0	57	25	30.4878
CXCR5	0	genome.wustl.edu	37	11	118764511	118764511	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	118764511	118764511	G	A	SNP	CXCR5	ENST00000292174	human	ensembl	74_37	+1	known	silent	c.258	p.T86	0.142	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_CXCR5,prints_GPCR_Rhodpsn,prints_Chemokine_CXCR4	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_CXCR5,prints_GPCR_Rhodpsn,prints_Chemokine_CXCR4,prints_ATII_rcpt	-	no_errors	CXCR5	HGNC	ENSG00000160683				51	0	0	37	20	35.0877
TRIM29	0	genome.wustl.edu	37	11	119993703	119993703	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	119993703	119993703	G	A	SNP	TRIM29	ENST00000341846	human	ensembl	74_37	-1	known	missense	c.1394	p.P465L	0.121	NULL	pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box	-	no_errors	TRIM29	HGNC	ENSG00000137699				75	0	0	62	21	25.3012
TRIM29	0	genome.wustl.edu	37	11	120008291	120008291	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	120008291	120008291	C	T	SNP	TRIM29	ENST00000341846	human	ensembl	74_37	-1	known	missense	c.449	p.R150Q	0.018	NULL	pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box	-	no_errors	TRIM29	HGNC	ENSG00000137699				72	0	0	58	32	35.5556
CRTAM	0	genome.wustl.edu	37	11	122733159	122733159	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	122733159	122733159	T	C	SNP	CRTAM	ENST00000533709	human	ensembl	74_37	+1	known	missense	c.43	p.S15P	1.000	NULL	NULL	-	no_errors	CRTAM	HGNC	ENSG00000109943				37	0	0	26	16	38.0952
ZNF202	0	genome.wustl.edu	37	11	123596771	123596771	+	Silent	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	123596771	123596771	T	C	SNP	ZNF202	ENST00000336139	human	ensembl	74_37	-1	known	silent	c.1881	p.G627	0.129	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF202	HGNC	ENSG00000166261				86	0	0	79	31	28.1818
OR10G4	0	genome.wustl.edu	37	11	123887208	123887208	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	123887208	123887208	G	T	SNP	OR10G4	ENST00000320891	human	ensembl	74_37	+1	known	missense	c.927	p.Q309H	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10G4	HGNC	ENSG00000254737				54	0	0	50	15	23.0769
OR10G7	0	genome.wustl.edu	37	11	123909240	123909240	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	123909240	123909240	C	A	SNP	OR10G7	ENST00000330487	human	ensembl	74_37	-1	known	missense	c.469	p.V157F	0.956	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10G7	HGNC	ENSG00000182634				184	0	0	137	56	29.0155
VSIG2	0	genome.wustl.edu	37	11	124619649	124619649	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	124619649	124619649	G	A	SNP	VSIG2	ENST00000326621	human	ensembl	74_37	-1	known	missense	c.541	p.R181C	0.129	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	VSIG2	HGNC	ENSG00000019102				102	0	0	91	52	36.3636
ROBO4	0	genome.wustl.edu	37	11	124765432	124765432	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	124765432	124765432	G	A	SNP	ROBO4	ENST00000306534	human	ensembl	74_37	-1	known	silent	c.957	p.Y319	0.993	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO4	HGNC	ENSG00000154133				41	0	0	36	13	26.5306
ARHGAP32	0	genome.wustl.edu	37	11	128840874	128840874	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	128840874	128840874	G	A	SNP	ARHGAP32	ENST00000310343	human	ensembl	74_37	-1	known	missense	c.4192	p.R1398C	1.000	NULL	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,pfam_Phox,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Phox,smart_SH3_domain,smart_RhoGAP_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP32	HGNC	ENSG00000134909				40	0	0	25	10	28.5714
RPS13	0	genome.wustl.edu	37	11	17098745	17098745	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	17098745	17098745	C	T	SNP	RPS13	ENST00000525634	human	ensembl	74_37	-1	known	missense	c.121	p.A41T	1.000	pfam_Ribosomal_S13/S15_N	pfam_Ribosomal_S13/S15_N,pfam_Ribosomal_S15,superfamily_S15_NS1_RNA-bd	-	no_errors	RPS13	HGNC	ENSG00000110700				166	0	0	148	69	31.7972
MYOD1	0	genome.wustl.edu	37	11	17742486	17742486	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	17742486	17742486	G	A	SNP	MYOD1	ENST00000250003	human	ensembl	74_37	+1	known	missense	c.668	p.R223Q	1.000	pfam_Myf5	pfam_Basic,pfam_Myf5,pfam_bHLH_dom,superfamily_bHLH_dom,smart_Basic,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MYOD1	HGNC	ENSG00000129152				14	0	0	1	3	75
SPTY2D1	0	genome.wustl.edu	37	11	18633072	18633072	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	18633072	18633072	C	T	SNP	SPTY2D1	ENST00000336349	human	ensembl	74_37	-1	known	missense	c.1916	p.R639H	1.000	pfam_Chromatin_SPT2,smart_Chromatin_SPT2	pfam_Chromatin_SPT2,smart_Chromatin_SPT2	-	no_errors	SPTY2D1	HGNC	ENSG00000179119				79	0	0	49	26	34.6667
IGSF22	0	genome.wustl.edu	37	11	18738330	18738330	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	18738330	18738330	G	A	SNP	IGSF22	ENST00000513874	human	ensembl	74_37	-1	known	silent	c.1191	p.G397	0.292	pfam_Ig_I-set,smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	IGSF22	HGNC	ENSG00000179057				105	0	0	83	51	38.0597
MRGPRX1	0	genome.wustl.edu	37	11	18955510	18955510	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	18955510	18955510	G	A	SNP	MRGPRX1	ENST00000302797	human	ensembl	74_37	-1	known	silent	c.822	p.F274	0.994	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	MRGPRX1	HGNC	ENSG00000170255				124	0	0	108	39	26.5306
TSPAN32	0	genome.wustl.edu	37	11	2339137	2339137	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	2339137	2339137	C	T	SNP	TSPAN32	ENST00000182290	human	ensembl	74_37	+1	known	missense	c.946	p.R316W	0.000	NULL	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	-	no_errors	TSPAN32	HGNC	ENSG00000064201				26	0	0	11	5	31.25
CARS	0	genome.wustl.edu	37	11	3062131	3062131	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	3062131	3062131	G	A	SNP	CARS	ENST00000380525	human	ensembl	74_37	-1	known	silent	c.450	p.H150	0.999	pfam_Cys-tRNA/MSH_ligase,tigrfam_Cys-tRNA-ligase	pfam_Cys-tRNA/MSH_ligase,pfam_Methionyl/Leucyl_tRNA_Synth,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Glutathione-S-Trfase_C-like,prints_Cys-tRNA/MSH_ligase,tigrfam_Cys-tRNA-ligase	-	no_errors	CARS	HGNC	ENSG00000110619				55	0	0	58	26	30.9524
OSBPL5	0	genome.wustl.edu	37	11	3140844	3140844	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	3140844	3140844	G	A	SNP	OSBPL5	ENST00000263650	human	ensembl	74_37	-1	known	silent	c.624	p.S208	0.387	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL5	HGNC	ENSG00000021762				23	0	0	22	11	33.3333
PAMR1	0	genome.wustl.edu	37	11	35456304	35456304	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	35456304	35456304	C	T	SNP	PAMR1	ENST00000278360	human	ensembl	74_37	-1	known	missense	c.1433	p.R478H	1.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_CUB_dom,pfam_Sushi_SCR_CCP,pfam_EG-like_dom,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_EG-like_dom,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_Sushi_SCR_CCP,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_CUB_dom,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1	-	no_errors	PAMR1	HGNC	ENSG00000149090				64	0	0	53	22	29.3333
PRR5L	0	genome.wustl.edu	37	11	36484349	36484349	+	RNA	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	36484349	36484349	C	T	SNP	PRR5L	ENST00000389693	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PRR5L	HGNC	ENSG00000135362				12	0	0	8	5	38.4615
NUP98	0	genome.wustl.edu	37	11	3697469	3697469	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	3697469	3697469	T	C	SNP	NUP98	ENST00000324932	human	ensembl	74_37	-1	known	missense	c.5323	p.M1775V	1.000	NULL	pfam_Nup96,pfam_Peptidase_S59,superfamily_Peptidase_S59	-	no_errors	NUP98	HGNC	ENSG00000110713				82	0	0	59	18	23.3766
B4GALNT4	0	genome.wustl.edu	37	11	375665	375665	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	375665	375665	G	A	SNP	B4GALNT4	ENST00000329962	human	ensembl	74_37	+1	known	missense	c.877	p.V293M	1.000	NULL	pfam_Chond_GalNAc,pfam_PA14,smart_PA14	-	no_errors	B4GALNT4	HGNC	ENSG00000182272				44	0	0	28	14	33.3333
ANO9	0	genome.wustl.edu	37	11	418466	418466	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	418466	418466	G	A	SNP	ANO9	ENST00000332826	human	ensembl	74_37	-1	known	nonsense	c.2254	p.Q752*	0.001	NULL	pfam_Anoctamin	-	no_errors	ANO9	HGNC	ENSG00000185101				64	0	0	40	21	34.4262
API5	0	genome.wustl.edu	37	11	43351532	43351532	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	43351532	43351532	G	A	SNP	API5	ENST00000531273	human	ensembl	74_37	+1	known	missense	c.1145	p.R382Q	1.000	pfam_API5,superfamily_ARM-type_fold	pfam_API5,superfamily_ARM-type_fold	-	no_errors	API5	HGNC	ENSG00000166181				74	0	0	50	15	23.0769
ACCS	0	genome.wustl.edu	37	11	44102762	44102762	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	44102762	44102762	C	A	SNP	ACCS	ENST00000263776	human	ensembl	74_37	+1	known	missense	c.1003	p.L335M	0.964	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	-	no_errors	ACCS	HGNC	ENSG00000110455				72	0	0	48	23	32.3944
CHST1	0	genome.wustl.edu	37	11	45671251	45671251	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	45671251	45671251	C	T	SNP	CHST1	ENST00000308064	human	ensembl	74_37	-1	known	missense	c.1223	p.R408H	0.998	pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST1	HGNC	ENSG00000175264				35	0	0	30	12	28.5714
AMBRA1	0	genome.wustl.edu	37	11	46419227	46419227	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	46419227	46419227	G	A	SNP	AMBRA1	ENST00000458649	human	ensembl	74_37	-1	known	nonsense	c.3670	p.R1224*	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	AMBRA1	HGNC	ENSG00000110497				27	0	0	23	6	20.6897
AMBRA1	0	genome.wustl.edu	37	11	46564257	46564257	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	46564257	46564257	G	A	SNP	AMBRA1	ENST00000458649	human	ensembl	74_37	-1	known	missense	c.1310	p.P437L	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	AMBRA1	HGNC	ENSG00000110497				60	0	0	51	30	37.037
AMBRA1	0	genome.wustl.edu	37	11	46568814	46568814	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	46568814	46568814	T	G	SNP	AMBRA1	ENST00000458649	human	ensembl	74_37	-1	known	missense	c.227	p.N76T	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	AMBRA1	HGNC	ENSG00000110497				109	0	0	102	37	26.6187
OR51F1	0	genome.wustl.edu	37	11	4790804	4790804	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	4790804	4790804	C	T	SNP	OR51F1	ENST00000380383	human	ensembl	74_37	-1	known	missense	c.365	p.G122E	0.428	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51F1	HGNC	ENSG00000188069				52	0	0	48	8	14.2857
PTDSS2	0	genome.wustl.edu	37	11	479107	479107	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	479107	479107	C	T	SNP	PTDSS2	ENST00000308020	human	ensembl	74_37	+1	known	silent	c.390	p.C130	1.000	pfam_PSS	pfam_PSS	-	no_errors	PTDSS2	HGNC	ENSG00000174915				157	1	0.632911	126	53	29.6089
OR4B1	0	genome.wustl.edu	37	11	48238681	48238681	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	48238681	48238681	T	C	SNP	OR4B1	ENST00000309562	human	ensembl	74_37	+1	known	missense	c.320	p.V107A	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4B1	HGNC	ENSG00000175619				133	0	0	111	62	35.8382
OR4X1	0	genome.wustl.edu	37	11	48286043	48286043	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	48286043	48286043	G	A	SNP	OR4X1	ENST00000320048	human	ensembl	74_37	+1	known	missense	c.631	p.V211M	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4X1	HGNC	ENSG00000176567				36	0	0	21	9	30
OR51G1	0	genome.wustl.edu	37	11	4945161	4945161	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	4945161	4945161	C	T	SNP	OR51G1	ENST00000321961	human	ensembl	74_37	-1	known	missense	c.409	p.V137I	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51G1	HGNC	ENSG00000176879				73	0	0	60	28	31.8182
TRIM48	0	genome.wustl.edu	37	11	55035844	55035844	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	55035844	55035844	T	C	SNP	TRIM48	ENST00000417545	human	ensembl	74_37	+1	known	missense	c.574	p.Y192H	0.183	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM48	HGNC	ENSG00000150244				66	0	0	67	14	17.284
OR8K5	0	genome.wustl.edu	37	11	55927379	55927379	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	55927379	55927379	G	A	SNP	OR8K5	ENST00000313447	human	ensembl	74_37	-1	known	nonsense	c.415	p.R139*	0.003	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8K5	HGNC	ENSG00000181752				107	0	0	100	32	24.2424
OR8H1	0	genome.wustl.edu	37	11	56058017	56058017	+	Silent	SNP	A	A	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	56058017	56058017	A	T	SNP	OR8H1	ENST00000313022	human	ensembl	74_37	-1	known	silent	c.522	p.R174	0.001	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8H1	HGNC	ENSG00000181693				95	0	0	91	12	11.6505
GLYATL1	0	genome.wustl.edu	37	11	58723451	58723451	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	58723451	58723451	G	A	SNP	GLYATL1	ENST00000300079	human	ensembl	74_37	+1	known	missense	c.953	p.C318Y	0.016	pfam_Glycine_N-acyltransferase_C,superfamily_Acyl_CoA_acyltransferase	pfam_Glycine_N-acyltransferase_N,pfam_Glycine_N-acyltransferase_C,superfamily_Acyl_CoA_acyltransferase	-	no_errors	GLYATL1	HGNC	ENSG00000166840				65	0	0	47	34	41.9753
OR5A1	0	genome.wustl.edu	37	11	59211421	59211421	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	59211421	59211421	C	T	SNP	OR5A1	ENST00000302030	human	ensembl	74_37	+1	known	silent	c.780	p.F260	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR5A1	HGNC	ENSG00000172320				205	0	0	137	73	34.7619
PATL1	0	genome.wustl.edu	37	11	59406604	59406604	+	Silent	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	59406604	59406604	T	C	SNP	PATL1	ENST00000300146	human	ensembl	74_37	-1	known	silent	c.2208	p.P736	0.004	NULL	pfam_Topo_II-assoc_PAT1	-	no_errors	PATL1	HGNC	ENSG00000166889				55	0	0	44	22	33.3333
PHRF1	0	genome.wustl.edu	37	11	598418	598418	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	598418	598418	G	A	SNP	PHRF1	ENST00000264555	human	ensembl	74_37	+1	known	missense	c.940	p.E314K	0.996	NULL	pfam_Znf_PHD-finger,pfam_Znf_C3HC4_RING-type,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	PHRF1	HGNC	ENSG00000070047				16	0	0	14	7	33.3333
PHRF1	0	genome.wustl.edu	37	11	608437	608437	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	608437	608437	G	A	SNP	PHRF1	ENST00000264555	human	ensembl	74_37	+1	known	missense	c.2981	p.R994H	0.994	NULL	pfam_Znf_PHD-finger,pfam_Znf_C3HC4_RING-type,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	PHRF1	HGNC	ENSG00000070047				12	0	0	12	3	20
MYRF	0	genome.wustl.edu	37	11	61543860	61543860	+	Silent	SNP	C	C	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	61543860	61543860	C	A	SNP	MYRF	ENST00000278836	human	ensembl	74_37	+1	known	silent	c.1455	p.T485	0.007	pfam_NDT80_DNA-bd_dom,superfamily_p53-like_TF_DNA-bd	pfam_NDT80_DNA-bd_dom,superfamily_p53-like_TF_DNA-bd	-	no_errors	MYRF	HGNC	ENSG00000124920				28	0	0	31	3	8.82353
AHNAK	0	genome.wustl.edu	37	11	62285596	62285596	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	62285596	62285596	G	A	SNP	AHNAK	ENST00000378024	human	ensembl	74_37	-1	known	silent	c.16293	p.G5431	0.056	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942				107	0	0	67	24	26.3736
TUT1	0	genome.wustl.edu	37	11	62349015	62349015	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	62349015	62349015	G	A	SNP	TUT1	ENST00000308436	human	ensembl	74_37	-1	known	silent	c.546	p.P182	0.039	NULL	pfam_PAP_assoc,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TUT1	HGNC	ENSG00000149016				28	0	0	17	15	46.875
FAM160A2	0	genome.wustl.edu	37	11	6244371	6244371	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	6244371	6244371	A	G	SNP	FAM160A2	ENST00000265978	human	ensembl	74_37	-1	known	missense	c.875	p.L292P	1.000	pfam_RetinoicA-induced_16-like	pfam_RetinoicA-induced_16-like	-	no_errors	FAM160A2	HGNC	ENSG00000051009				172	0	0	135	65	32.5
TTC9C	0	genome.wustl.edu	37	11	62496491	62496491	+	Silent	SNP	G	G	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	62496491	62496491	G	C	SNP	TTC9C	ENST00000513247	human	ensembl	74_37	+1	known	silent	c.570	p.P190	0.009	NULL	NULL	-	no_errors	TTC9C	HGNC	ENSG00000162222				70	0	0	57	36	38.7097
MARK2	0	genome.wustl.edu	37	11	63676573	63676573	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	63676573	63676573	A	G	SNP	MARK2	ENST00000402010	human	ensembl	74_37	+1	known	missense	c.2231	p.D744G	0.990	superfamily_KA1/Ssp2_C	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_KA1_dom,superfamily_Kinase-like_dom,superfamily_KA1/Ssp2_C,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MARK2	HGNC	ENSG00000072518				52	0	0	73	4	5.19481
NAA40	0	genome.wustl.edu	37	11	63720200	63720200	+	RNA	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	63720200	63720200	C	T	SNP	NAA40	ENST00000542633	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NAA40	HGNC	ENSG00000110583				21	0	0	19	17	47.2222
SMPD1	0	genome.wustl.edu	37	11	6413002	6413002	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	6413002	6413002	C	T	SNP	SMPD1	ENST00000342245	human	ensembl	74_37	+1	known	missense	c.707	p.P236L	0.966	pfam_PEstase_dom,pirsf_Sphingomy_PDE	pfam_PEstase_dom,superfamily_Saposin-like,smart_SaposinB,pirsf_Sphingomy_PDE,pfscan_SaposinB	-	no_errors	SMPD1	HGNC	ENSG00000166311				32	0	0	19	14	42.4242
APBB1	0	genome.wustl.edu	37	11	6432180	6432180	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	6432180	6432180	C	T	SNP	APBB1	ENST00000389906	human	ensembl	74_37	-1	known	missense	c.398	p.R133Q	0.994	NULL	pfam_PTB/PI_dom,pfam_WW_dom,pfam_PTB,superfamily_WW_dom,smart_WW_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom,pfscan_WW_dom	-	no_errors	APBB1	HGNC	ENSG00000166313				136	0	0	103	37	26.4286
NAALADL1	0	genome.wustl.edu	37	11	64813303	64813303	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	64813303	64813303	C	T	SNP	NAALADL1	ENST00000358658	human	ensembl	74_37	-1	known	missense	c.2027	p.R676H	0.955	pfam_TFR-like_dimer_dom,superfamily_TFR-like_dimer_dom	pfam_TFR-like_dimer_dom,pfam_Peptidase_M28,pfam_Protease-assoc_domain,superfamily_TFR-like_dimer_dom	-	no_errors	NAALADL1	HGNC	ENSG00000168060				24	0	0	27	11	28.9474
PCNXL3	0	genome.wustl.edu	37	11	65392970	65392970	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	65392970	65392970	C	T	SNP	PCNXL3	ENST00000355703	human	ensembl	74_37	+1	known	missense	c.3124	p.R1042C	1.000	NULL	pfam_Pecanex	-	no_errors	PCNXL3	HGNC	ENSG00000197136				17	0	0	22	5	18.5185
AP5B1	0	genome.wustl.edu	37	11	65547392	65547392	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	65547392	65547392	A	G	SNP	AP5B1	ENST00000532090	human	ensembl	74_37	-1	novel	missense	c.572	p.L191P	0.268	NULL	NULL	-	no_errors	AP5B1	HGNC	ENSG00000254470				9	0	0	15	9	37.5
GAL3ST3	0	genome.wustl.edu	37	11	65810630	65810630	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	65810630	65810630	C	T	SNP	GAL3ST3	ENST00000312006	human	ensembl	74_37	-1	known	missense	c.644	p.R215H	1.000	pfam_Gal-3-0_sulfotransfrase	pfam_Gal-3-0_sulfotransfrase,superfamily_P-loop_NTPase	-	no_errors	GAL3ST3	HGNC	ENSG00000175229				26	0	0	18	7	28
PACS1	0	genome.wustl.edu	37	11	65998373	65998373	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	65998373	65998373	G	A	SNP	PACS1	ENST00000320580	human	ensembl	74_37	+1	known	missense	c.1588	p.D530N	1.000	NULL	pfam_Phosphofurin_acidic_CS-1	-	no_errors	PACS1	HGNC	ENSG00000175115				59	0	0	27	18	40
RIN1	0	genome.wustl.edu	37	11	66099763	66099763	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	66099763	66099763	C	T	SNP	RIN1	ENST00000311320	human	ensembl	74_37	-1	known	missense	c.2336	p.R779Q	0.000	NULL	pfam_VPS9,pfam_Ras-assoc,smart_SH2,smart_VPS9_subgr,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SH2,pfscan_VPS9	-	no_errors	RIN1	HGNC	ENSG00000174791				135	0	0	74	53	41.7323
DPP3	0	genome.wustl.edu	37	11	66249741	66249741	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	66249741	66249741	C	T	SNP	DPP3	ENST00000360510	human	ensembl	74_37	+1	known	missense	c.70	p.R24C	0.998	pirsf_Dipeptidyl-peptase3	pirsf_Dipeptidyl-peptase3	-	no_errors	DPP3	HGNC	ENSG00000254986				40	0	0	31	13	29.5455
RBM14	0	genome.wustl.edu	37	11	66393068	66393068	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	66393068	66393068	C	T	SNP	RBM14	ENST00000310137	human	ensembl	74_37	+1	known	missense	c.1721	p.P574L	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM14	HGNC	ENSG00000239306				18	0	0	13	6	31.5789
KDM2A	0	genome.wustl.edu	37	11	67017609	67017609	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	67017609	67017609	G	T	SNP	KDM2A	ENST00000529006	human	ensembl	74_37	+1	known	missense	c.2108	p.R703L	1.000	NULL	pfam_Znf_CXXC,pfam_F-box_dom,pfam_JmjC_dom,superfamily_Znf_FYVE_PHD,smart_JmjC_dom,smart_Znf_PHD,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KDM2A	HGNC	ENSG00000173120				21	0	0	21	6	22.2222
ADRBK1	0	genome.wustl.edu	37	11	67051736	67051736	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	67051736	67051736	C	T	SNP	ADRBK1	ENST00000308595	human	ensembl	74_37	+1	known	missense	c.1546	p.R516W	1.000	superfamily_Kinase-like_dom,smart_AGC-kinase_C,prints_GPCR_kinase	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RGS_dom,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Regulat_G_prot_signal_superfam,pfscan_Prot_kinase_dom,prints_GPCR_kinase	-	no_errors	ADRBK1	HGNC	ENSG00000173020				86	0	0	46	26	36.1111
CORO1B	0	genome.wustl.edu	37	11	67205786	67205786	+	RNA	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	67205786	67205786	T	C	SNP	CORO1B	ENST00000539724	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	CORO1B	HGNC	ENSG00000172725				24	0	0	12	10	45.4545
LRP5	0	genome.wustl.edu	37	11	68205952	68205952	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	68205952	68205952	A	C	SNP	LRP5	ENST00000294304	human	ensembl	74_37	+1	known	missense	c.4150	p.S1384R	1.000	pirsf_Low_density_Lipo_rcpt-rel_p5/6	pirsf_Low_density_Lipo_rcpt-rel_p5/6,pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDLR_classB_rpt,smart_EG-like_dom,smart_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP5	HGNC	ENSG00000162337				43	0	0	37	13	26
OR10A5	0	genome.wustl.edu	37	11	6867015	6867015	+	Silent	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	6867015	6867015	T	C	SNP	OR10A5	ENST00000379831	human	ensembl	74_37	+1	known	silent	c.114	p.T38	0.047	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10A5	HGNC	ENSG00000166363				207	1	0.480769	157	28	15.1351
OR10A2	0	genome.wustl.edu	37	11	6891003	6891003	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	6891003	6891003	G	A	SNP	OR10A2	ENST00000307322	human	ensembl	74_37	+1	known	silent	c.18	p.L6	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10A2	HGNC	ENSG00000170790				233	0	0	245	31	11.2319
OR10A2	0	genome.wustl.edu	37	11	6891024	6891024	+	Silent	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	6891024	6891024	A	G	SNP	OR10A2	ENST00000307322	human	ensembl	74_37	+1	known	silent	c.39	p.L13	0.075	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10A2	HGNC	ENSG00000170790				240	0	0	275	43	13.522
OR10A2	0	genome.wustl.edu	37	11	6891030	6891030	+	Silent	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	6891030	6891030	T	C	SNP	OR10A2	ENST00000307322	human	ensembl	74_37	+1	known	silent	c.45	p.F15	0.025	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10A2	HGNC	ENSG00000170790				232	0	0	277	54	16.3142
MYEOV	0	genome.wustl.edu	37	11	69063312	69063312	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	69063312	69063312	G	A	SNP	MYEOV	ENST00000308946	human	ensembl	74_37	+1	known	missense	c.395	p.R132Q	0.000	NULL	NULL	-	no_errors	MYEOV	HGNC	ENSG00000172927				141	0	0	119	34	22.2222
LRTOMT	0	genome.wustl.edu	37	11	71806464	71806464	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	71806464	71806464	C	T	SNP	LRTOMT	ENST00000539271	human	ensembl	74_37	+1	putative	missense	c.74	p.S25L	0.995	NULL	NULL	-	no_errors	LRTOMT	HGNC	ENSG00000184154				62	0	0	47	20	29.8507
FOLR2	0	genome.wustl.edu	37	11	71931995	71931995	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	71931995	71931995	T	G	SNP	FOLR2	ENST00000298223	human	ensembl	74_37	+1	known	missense	c.232	p.F78V	1.000	pfam_Folate_rcpt-like	pfam_Folate_rcpt-like	-	no_errors	FOLR2	HGNC	ENSG00000165457				44	0	0	29	8	21.6216
ARAP1	0	genome.wustl.edu	37	11	72396593	72396593	+	RNA	SNP	G	G	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	72396593	72396593	G	T	SNP	ARAP1	ENST00000495878	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.928	-	-	-	no_errors	ARAP1	HGNC	ENSG00000186635				29	0	0	11	18	62.069
C2CD3	0	genome.wustl.edu	37	11	73785348	73785348	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	73785348	73785348	G	A	SNP	C2CD3	ENST00000334126	human	ensembl	74_37	-1	known	missense	c.4901	p.T1634M	0.985	superfamily_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom	-	no_errors	C2CD3	HGNC	ENSG00000168014				47	0	0	36	19	34.5455
OR2AT4	0	genome.wustl.edu	37	11	74800716	74800716	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	74800716	74800716	C	T	SNP	OR2AT4	ENST00000305159	human	ensembl	74_37	-1	known	missense	c.43	p.V15I	0.006	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Olfact_rcpt	-	no_errors	OR2AT4	HGNC	ENSG00000171561				43	0	0	39	22	36.0656
GDPD5	0	genome.wustl.edu	37	11	75146602	75146602	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	75146602	75146602	G	A	SNP	GDPD5	ENST00000336898	human	ensembl	74_37	-1	known	nonsense	c.1768	p.R590*	0.038	NULL	pfam_GlyceroP-diester-Pdiesterase,superfamily_PLC-like_Pdiesterase_TIM-brl	-	no_errors	GDPD5	HGNC	ENSG00000158555				44	0	0	43	20	31.746
OVCH2	0	genome.wustl.edu	37	11	7716409	7716409	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	7716409	7716409	G	T	SNP	OVCH2	ENST00000454689	human	ensembl	74_37	-1	known	nonsense	c.1293	p.C431*	0.141	superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_Peptidase_S1,pfam_CUB_dom,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,smart_Peptidase_S1,smart_CUB_dom,pfscan_CUB_dom,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	OVCH2	HGNC	ENSG00000183378				14	0	0	12	4	25
CCDC81	0	genome.wustl.edu	37	11	86133684	86133684	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	86133684	86133684	G	A	SNP	CCDC81	ENST00000445632	human	ensembl	74_37	+1	known	missense	c.1886	p.R629H	0.716	NULL	superfamily_IHF-like_DNA-bd_dom	-	no_errors	CCDC81	HGNC	ENSG00000149201				39	0	0	31	24	43.6364
ME3	0	genome.wustl.edu	37	11	86161430	86161430	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	86161430	86161430	G	A	SNP	ME3	ENST00000359636	human	ensembl	74_37	-1	known	silent	c.930	p.S310	0.103	pfam_Malic_NAD-bd,smart_Malic_NAD-bd,prints_Malic_OxRdtase	pfam_Malic_NAD-bd,pfam_Malic_N,smart_Malic_NAD-bd,prints_Malic_OxRdtase	-	no_errors	ME3	HGNC	ENSG00000151376				28	0	0	16	9	36
ME3	0	genome.wustl.edu	37	11	86270753	86270753	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	86270753	86270753	C	T	SNP	ME3	ENST00000359636	human	ensembl	74_37	-1	known	missense	c.296	p.R99Q	0.891	NULL	pfam_Malic_NAD-bd,pfam_Malic_N,smart_Malic_NAD-bd,prints_Malic_OxRdtase	-	no_errors	ME3	HGNC	ENSG00000151376				157	0	0	107	54	33.5404
FOLH1B	0	genome.wustl.edu	37	11	89431831	89431831	+	RNA	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	89431831	89431831	T	C	SNP	FOLH1B	ENST00000525540	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	FOLH1B	HGNC	ENSG00000134612				8	0	0	11	6	35.2941
NRIP3	0	genome.wustl.edu	37	11	9009687	9009687	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	9009687	9009687	T	C	SNP	NRIP3	ENST00000309166	human	ensembl	74_37	-1	known	missense	c.317	p.D106G	1.000	pfam_Peptidase_aspartic_DDI1-type,superfamily_Peptidase_aspartic_dom	pfam_Peptidase_aspartic_DDI1-type,superfamily_Peptidase_aspartic_dom	-	no_errors	NRIP3	HGNC	ENSG00000175352				127	1	0.78125	99	52	34.4371
DENND5A	0	genome.wustl.edu	37	11	9191462	9191462	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	9191462	9191462	G	A	SNP	DENND5A	ENST00000328194	human	ensembl	74_37	-1	known	missense	c.2092	p.R698W	1.000	NULL	pfam_DENN_dom,pfam_Run,pfam_uDENN_dom,pfam_dDENN_dom,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_Run,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_PLAT/LH2_dom,pfscan_Run	-	no_errors	DENND5A	HGNC	ENSG00000184014				136	0	0	155	31	16.6667
FAT3	0	genome.wustl.edu	37	11	92088438	92088438	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	92088438	92088438	G	C	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	missense	c.3160	p.E1054Q	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323				71	0	0	50	21	29.5775
CWC15	0	genome.wustl.edu	37	11	94704653	94704653	+	Splice_Site	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	94704653	94704653	T	C	SNP	CWC15	ENST00000279839	human	ensembl	74_37	-1	known	splice_site	c.132-2	e2-2	1.000	-	-	-	no_errors	CWC15	HGNC	ENSG00000150316				21	0	0	19	13	40.625
CCDC82	0	genome.wustl.edu	37	11	96086838	96086838	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	96086838	96086838	T	C	SNP	CCDC82	ENST00000278520	human	ensembl	74_37	-1	known	missense	c.1607	p.Y536C	1.000	NULL	NULL	-	no_errors	CCDC82	HGNC	ENSG00000149231				69	0	0	63	27	30
STAB2	0	genome.wustl.edu	37	12	104030991	104030991	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	104030991	104030991	G	A	SNP	STAB2	ENST00000388887	human	ensembl	74_37	+1	known	missense	c.686	p.R229Q	0.003	smart_EG-like_dom,pfscan_EG-like_dom	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_FAS1_domain,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB2	HGNC	ENSG00000136011				107	0	0	103	46	30.8725
TXNRD1	0	genome.wustl.edu	37	12	104733053	104733053	+	Splice_Site	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	104733053	104733053	T	C	SNP	TXNRD1	ENST00000429002	human	ensembl	74_37	+1	known	splice_site	c.1881+2	e16+2	1.000	-	-	-	no_errors	TXNRD1	HGNC	ENSG00000198431				46	0	0	44	7	13.7255
MAGOHB	0	genome.wustl.edu	37	12	10762434	10762434	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	10762434	10762434	C	T	SNP	MAGOHB	ENST00000320756	human	ensembl	74_37	-1	known	missense	c.260	p.R87Q	1.000	pfam_Mago_nashi,superfamily_Mago_nashi	pfam_Mago_nashi,superfamily_Mago_nashi	-	no_errors	MAGOHB	HGNC	ENSG00000111196				28	0	0	21	9	30
USP30	0	genome.wustl.edu	37	12	109509471	109509471	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	109509471	109509471	C	T	SNP	USP30	ENST00000257548	human	ensembl	74_37	+1	known	missense	c.535	p.R179C	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP30	HGNC	ENSG00000135093				50	0	0	37	19	33.9286
FAM222A	0	genome.wustl.edu	37	12	110206924	110206924	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	110206924	110206924	G	A	SNP	FAM222A	ENST00000358906	human	ensembl	74_37	+1	known	missense	c.1190	p.C397Y	1.000	NULL	NULL	-	no_errors	FAM222A	HGNC	ENSG00000139438				13	0	0	7	7	50
HECTD4	0	genome.wustl.edu	37	12	112696395	112696395	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	112696395	112696395	C	T	SNP	HECTD4	ENST00000377560	human	ensembl	74_37	-1	known	silent	c.2487	p.A829	0.968	NULL	pfam_HECT,superfamily_HECT,superfamily_ConA-like_lec_gl_sf,smart_HECT,pfscan_HECT	-	no_errors	HECTD4	HGNC	ENSG00000173064				85	0	0	59	27	31.3953
TBX5	0	genome.wustl.edu	37	12	114793517	114793517	+	Silent	SNP	G	G	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	114793517	114793517	G	T	SNP	TBX5	ENST00000310346	human	ensembl	74_37	-1	known	silent	c.1377	p.T459	1.000	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX5	HGNC	ENSG00000089225				20	0	0	13	10	43.4783
NOS1	0	genome.wustl.edu	37	12	117672425	117672425	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	117672425	117672425	C	T	SNP	NOS1	ENST00000317775	human	ensembl	74_37	-1	known	silent	c.3180	p.P1060	0.997	pfam_FAD-binding_1,superfamily_Riboflavin_synthase-like_b-brl,pirsf_NOS_euk	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,pfam_PDZ,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,superfamily_PDZ,smart_PDZ,pirsf_NOS_euk,pfscan_PDZ,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS1	HGNC	ENSG00000089250				44	0	0	31	11	26.1905
NOS1	0	genome.wustl.edu	37	12	117728174	117728174	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	117728174	117728174	G	A	SNP	NOS1	ENST00000317775	human	ensembl	74_37	-1	known	missense	c.910	p.R304C	1.000	superfamily_NO_synthase_oxygenase_dom,pirsf_NOS_euk	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,pfam_PDZ,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,superfamily_PDZ,smart_PDZ,pirsf_NOS_euk,pfscan_PDZ,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS1	HGNC	ENSG00000089250				42	0	0	23	9	28.125
GCN1L1	0	genome.wustl.edu	37	12	120585995	120585995	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	120585995	120585995	C	T	SNP	GCN1L1	ENST00000300648	human	ensembl	74_37	-1	known	missense	c.4702	p.V1568I	1.000	superfamily_ARM-type_fold	pfam_DUF3554,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	GCN1L1	HGNC	ENSG00000089154				41	0	0	36	12	25
PXN	0	genome.wustl.edu	37	12	120651713	120651713	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	120651713	120651713	G	A	SNP	PXN	ENST00000267257	human	ensembl	74_37	-1	known	missense	c.1483	p.R495W	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM,prints_Paxillin	-	no_errors	PXN	HGNC	ENSG00000089159				15	0	0	6	7	53.8462
OASL	0	genome.wustl.edu	37	12	121458651	121458651	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	121458651	121458651	A	C	SNP	OASL	ENST00000257570	human	ensembl	74_37	-1	known	missense	c.1258	p.S420A	0.971	smart_Ubiquitin_dom	pfam_2-5-oligoAdlate_synth_1_dom2/C,pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_2-5-oligoadenylate_synth_N,pfscan_Ubiquitin_supergroup	-	no_errors	OASL	HGNC	ENSG00000135114				59	0	0	32	26	44.8276
KDM2B	0	genome.wustl.edu	37	12	121878950	121878950	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	121878950	121878950	C	T	SNP	KDM2B	ENST00000377071	human	ensembl	74_37	-1	known	missense	c.3371	p.R1124Q	0.973	NULL	pfam_Znf_CXXC,pfam_F-box_dom,pfam_JmjC_dom,superfamily_Znf_FYVE_PHD,smart_JmjC_dom,smart_Znf_PHD,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KDM2B	HGNC	ENSG00000089094				44	0	0	27	15	35.7143
HIP1R	0	genome.wustl.edu	37	12	123344320	123344320	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	123344320	123344320	A	G	SNP	HIP1R	ENST00000253083	human	ensembl	74_37	+1	known	missense	c.2408	p.D803G	1.000	pfscan_ILWEQ_dom	pfam_ANTH_dom,pfam_ILWEQ_dom,pfam_Epsin_dom_N,superfamily_ENTH_VHS,smart_Epsin-like_N,smart_ILWEQ_dom,pfscan_Epsin-like_N,pfscan_ILWEQ_dom	-	no_errors	HIP1R	HGNC	ENSG00000130787				36	0	0	25	11	30.5556
PITPNM2	0	genome.wustl.edu	37	12	123481982	123481982	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	123481982	123481982	G	A	SNP	PITPNM2	ENST00000320201	human	ensembl	74_37	-1	known	silent	c.1362	p.N454	0.027	NULL	pfam_PI_transfer,pfam_DDHD,pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2,pfscan_DDHD,prints_PI_transfer	-	no_errors	PITPNM2	HGNC	ENSG00000090975				69	0	0	34	20	37.037
NCOR2	0	genome.wustl.edu	37	12	124887004	124887004	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	124887004	124887004	G	T	SNP	NCOR2	ENST00000356219	human	ensembl	74_37	-1	known	missense	c.1586	p.A529E	0.934	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR2	HGNC	ENSG00000196498				19	0	0	18	9	33.3333
TMEM132D	0	genome.wustl.edu	37	12	130184470	130184470	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	130184470	130184470	G	A	SNP	TMEM132D	ENST00000422113	human	ensembl	74_37	-1	known	missense	c.853	p.R285C	0.471	NULL	NULL	-	no_errors	TMEM132D	HGNC	ENSG00000151952				47	0	0	37	16	30.1887
EP400	0	genome.wustl.edu	37	12	132504627	132504627	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	132504627	132504627	C	T	SNP	EP400	ENST00000333577	human	ensembl	74_37	+1	known	silent	c.4419	p.P1473	0.578	NULL	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495				47	0	0	39	10	20.4082
EP400NL	0	genome.wustl.edu	37	12	132588802	132588802	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	132588802	132588802	G	A	SNP	EP400NL	ENST00000376625	human	ensembl	74_37	+1	known	silent	c.237	p.T79	0.848	NULL	NULL	-	no_errors	EP400NL	HGNC	ENSG00000185684				13	0	0	17	7	29.1667
GOLGA3	0	genome.wustl.edu	37	12	133350862	133350862	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	133350862	133350862	C	T	SNP	GOLGA3	ENST00000204726	human	ensembl	74_37	-1	known	silent	c.4188	p.T1396	0.018	NULL	superfamily_Prefoldin	-	no_errors	GOLGA3	HGNC	ENSG00000090615				49	0	0	32	20	38.4615
WNT5B	0	genome.wustl.edu	37	12	1755092	1755092	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	1755092	1755092	G	A	SNP	WNT5B	ENST00000310594	human	ensembl	74_37	+1	known	missense	c.754	p.A252T	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt	-	no_errors	WNT5B	HGNC	ENSG00000111186				26	0	0	16	11	40.7407
ABCC9	0	genome.wustl.edu	37	12	22005053	22005053	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	22005053	22005053	C	T	SNP	ABCC9	ENST00000261200	human	ensembl	74_37	-1	known	missense	c.2747	p.R916Q	1.000	NULL	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_Sulphorea_rcpt,prints_Sulphonylurea_rcpt-2	-	no_errors	ABCC9	HGNC	ENSG00000069431				32	0	0	22	12	35.2941
RASSF8	0	genome.wustl.edu	37	12	26217838	26217838	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	26217838	26217838	C	T	SNP	RASSF8	ENST00000282884	human	ensembl	74_37	+1	known	missense	c.511	p.R171C	0.974	NULL	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc	-	no_errors	RASSF8	HGNC	ENSG00000123094				114	0	0	85	35	29.1667
ITPR2	0	genome.wustl.edu	37	12	26752167	26752167	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	26752167	26752167	G	A	SNP	ITPR2	ENST00000381340	human	ensembl	74_37	-1	known	missense	c.3913	p.R1305C	1.000	pfam_Ca-rel_channel,superfamily_ARM-type_fold	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR2	HGNC	ENSG00000123104				170	0	0	128	61	32.2751
KLHL42	0	genome.wustl.edu	37	12	27950929	27950929	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	27950929	27950929	G	A	SNP	KLHL42	ENST00000381271	human	ensembl	74_37	+1	known	missense	c.1348	p.G450S	1.000	NULL	pfam_Kelch_1,pfam_BACK,superfamily_BTB/POZ_fold,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KLHL42	HGNC	ENSG00000087448				60	0	0	34	17	33.3333
IQSEC3	0	genome.wustl.edu	37	12	280307	280307	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	280307	280307	C	T	SNP	IQSEC3	ENST00000326261	human	ensembl	74_37	+1	known	missense	c.3094	p.P1032S	0.161	NULL	pfam_Sec7_dom,superfamily_Sec7_dom,smart_Sec7_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7_dom	-	no_errors	IQSEC3	HGNC	ENSG00000120645				36	0	0	28	8	22.2222
FAR2	0	genome.wustl.edu	37	12	29423430	29423430	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	29423430	29423430	G	A	SNP	FAR2	ENST00000182377	human	ensembl	74_37	+1	known	silent	c.48	p.T16	0.004	pfam_Male_sterile_NAD-bd,pfam_Epimerase_deHydtase,pfam_3Beta_OHSteriod_DH/Estase,pfam_Polysac_CapD-like	pfam_Male_sterile_NAD-bd,pfam_FAR,pfam_Epimerase_deHydtase,pfam_3Beta_OHSteriod_DH/Estase,pfam_Polysac_CapD-like	-	no_errors	FAR2	HGNC	ENSG00000064763				39	0	0	27	17	38.6364
DDX11	0	genome.wustl.edu	37	12	31249595	31249595	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	31249595	31249595	G	A	SNP	DDX11	ENST00000407793	human	ensembl	74_37	+1	known	missense	c.1546	p.G516R	0.022	tigrfam_DNA_helicase_DNA-repair_Rad3	pfam_DEAD_2,superfamily_P-loop_NTPase,smart_Helicase-like_DEXD_c2,smart_ATP-dep_Helicase_C,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	-	no_errors	DDX11	HGNC	ENSG00000013573				44	0	0	41	22	34.9206
PRICKLE1	0	genome.wustl.edu	37	12	42859016	42859016	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	42859016	42859016	C	T	SNP	PRICKLE1	ENST00000345127	human	ensembl	74_37	-1	known	missense	c.820	p.A274T	1.000	pfam_Znf_LIM,smart_Znf_LIM	pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	PRICKLE1	HGNC	ENSG00000139174				66	0	0	55	18	24.6575
ARID2	0	genome.wustl.edu	37	12	46246296	46246296	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	46246296	46246296	C	T	SNP	ARID2	ENST00000334344	human	ensembl	74_37	+1	known	missense	c.4390	p.R1464C	1.000	NULL	pfam_ARID/BRIGHT_DNA-bd,pfam_DNA-bd_RFX,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID2	HGNC	ENSG00000189079				138	0	0	98	57	36.7742
ZNF641	0	genome.wustl.edu	37	12	48737355	48737355	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	48737355	48737355	G	C	SNP	ZNF641	ENST00000301042	human	ensembl	74_37	-1	known	missense	c.718	p.P240A	0.336	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF641	HGNC	ENSG00000167528				36	0	0	42	3	6.66667
TUBA1C	0	genome.wustl.edu	37	12	49663409	49663409	+	Silent	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	49663409	49663409	A	G	SNP	TUBA1C	ENST00000301072	human	ensembl	74_37	+1	known	silent	c.165	p.E55	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Alpha_tubulin,prints_Tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Beta_tubulin,prints_Delta_tubulin	-	no_errors	TUBA1C	HGNC	ENSG00000167553				127	0	0	101	17	14.4068
PRPF40B	0	genome.wustl.edu	37	12	50025223	50025223	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	50025223	50025223	G	T	SNP	PRPF40B	ENST00000548825	human	ensembl	74_37	+1	known	missense	c.124	p.G42W	1.000	NULL	pfam_FF_domain,pfam_WW_dom,superfamily_FF_domain,superfamily_WW_dom,smart_WW_dom,smart_FF_domain,pfscan_WW_dom	-	no_errors	PRPF40B	HGNC	ENSG00000110844				111	1	0.892857	81	30	27.027
RACGAP1	0	genome.wustl.edu	37	12	50386088	50386088	+	Silent	SNP	G	G	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	50386088	50386088	G	C	SNP	RACGAP1	ENST00000312377	human	ensembl	74_37	-1	known	silent	c.1518	p.A506	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Rho_GTPase_activation_prot,superfamily_Regulat_G_prot_signal_superfam,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	RACGAP1	HGNC	ENSG00000161800				99	0	0	77	31	28.7037
SLC11A2	0	genome.wustl.edu	37	12	51394196	51394196	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	51394196	51394196	G	A	SNP	SLC11A2	ENST00000394904	human	ensembl	74_37	-1	known	nonsense	c.523	p.R175*	1.000	pfam_NRAMP-like,tigrfam_NRAMP-like	pfam_NRAMP-like,prints_NRAMP-like,tigrfam_NRAMP-like	-	no_errors	SLC11A2	HGNC	ENSG00000110911				53	0	0	47	21	30.8824
KRT85	0	genome.wustl.edu	37	12	52761184	52761184	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	52761184	52761184	C	T	SNP	KRT85	ENST00000257901	human	ensembl	74_37	-1	known	silent	c.6	p.S2	0.567	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT85	HGNC	ENSG00000135443				22	0	0	16	9	36
HOXC13	0	genome.wustl.edu	37	12	54338837	54338837	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	54338837	54338837	C	T	SNP	HOXC13	ENST00000243056	human	ensembl	74_37	+1	known	missense	c.790	p.R264C	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,pfam_HoxA13_N,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	HOXC13	HGNC	ENSG00000123364				84	0	0	53	38	41.7582
HOXC12	0	genome.wustl.edu	37	12	54350327	54350327	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	54350327	54350327	G	A	SNP	HOXC12	ENST00000243103	human	ensembl	74_37	+1	known	missense	c.826	p.E276K	1.000	smart_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXC12	HGNC	ENSG00000123407				111	0	0	75	25	25
PA2G4	0	genome.wustl.edu	37	12	56504448	56504448	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	56504448	56504448	C	T	SNP	PA2G4	ENST00000303305	human	ensembl	74_37	+1	known	missense	c.814	p.R272C	1.000	superfamily_Pept_M24_structural-domain,tigrfam_Pap_1	pfam_Pept_M24_structural-domain,superfamily_Pept_M24_structural-domain,tigrfam_Pap_1	-	no_errors	PA2G4	HGNC	ENSG00000170515				53	0	0	65	8	10.9589
SMARCC2	0	genome.wustl.edu	37	12	56563355	56563355	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	56563355	56563355	G	A	SNP	SMARCC2	ENST00000267064	human	ensembl	74_37	-1	known	silent	c.2580	p.T860	0.481	NULL	pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,superfamily_BRCT_dom,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_SANT/Myb,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	SMARCC2	HGNC	ENSG00000139613				32	0	0	24	14	36.8421
NABP2	0	genome.wustl.edu	37	12	56622977	56622977	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	56622977	56622977	C	T	SNP	NABP2	ENST00000267023	human	ensembl	74_37	+1	known	missense	c.616	p.R206W	1.000	NULL	pfam_NA-bd_OB_tRNA,superfamily_NA-bd_OB-fold	-	no_errors	NABP2	HGNC	ENSG00000139579				61	0	0	53	23	30.2632
PAN2	0	genome.wustl.edu	37	12	56718087	56718087	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	56718087	56718087	G	A	SNP	PAN2	ENST00000425394	human	ensembl	74_37	-1	known	missense	c.1919	p.A640V	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Exonuclease_RNaseT/DNA_pol3,pfam_Peptidase_C19/C67,superfamily_RNaseH-like_dom,superfamily_WD40_repeat_dom,smart_Exonuclease,pfscan_Peptidase_C19/C67	-	no_errors	PAN2	HGNC	ENSG00000135473				85	0	0	92	30	24.5902
BAZ2A	0	genome.wustl.edu	37	12	56995134	56995134	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	56995134	56995134	G	A	SNP	BAZ2A	ENST00000551812	human	ensembl	74_37	-1	known	missense	c.4130	p.T1377M	0.750	NULL	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_dom,superfamily_Znf_FYVE_PHD,smart_Methyl_CpG_DNA-bd,smart_AT_hook_DNA-bd_motif,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2A	HGNC	ENSG00000076108				48	0	0	25	19	43.1818
LRP1	0	genome.wustl.edu	37	12	57578171	57578171	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	57578171	57578171	C	T	SNP	LRP1	ENST00000243077	human	ensembl	74_37	+1	known	missense	c.6122	p.T2041M	0.554	pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384				60	0	0	55	25	31.25
SHMT2	0	genome.wustl.edu	37	12	57625344	57625344	+	Splice_Site	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	57625344	57625344	G	A	SNP	SHMT2	ENST00000328923	human	ensembl	74_37	+1	known	splice_site	c.311+1	e3+1	1.000	-	-	-	no_errors	SHMT2	HGNC	ENSG00000182199				28	0	0	26	13	33.3333
ARHGAP9	0	genome.wustl.edu	37	12	57867953	57867953	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	57867953	57867953	C	T	SNP	ARHGAP9	ENST00000356411	human	ensembl	74_37	-1	known	missense	c.1847	p.R616Q	0.919	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_WW_dom,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_WW_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP9	HGNC	ENSG00000123329				52	0	0	31	17	35.4167
C12orf66	0	genome.wustl.edu	37	12	64609628	64609628	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	64609628	64609628	G	A	SNP	C12orf66	ENST00000398055	human	ensembl	74_37	-1	known	silent	c.351	p.H117	0.974	pfam_DUF2003	pfam_DUF2003	-	no_errors	C12orf66	HGNC	ENSG00000174206				18	0	0	12	6	33.3333
TMBIM4	0	genome.wustl.edu	37	12	66546105	66546105	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	66546105	66546105	C	T	SNP	TMBIM4	ENST00000358230	human	ensembl	74_37	-1	known	silent	c.258	p.A86	0.119	pfam_Bax_inhibitor_1-related	pfam_Bax_inhibitor_1-related	-	no_errors	TMBIM4	HGNC	ENSG00000155957				44	0	0	54	14	20.5882
GRIP1	0	genome.wustl.edu	37	12	66771012	66771012	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	66771012	66771012	G	A	SNP	GRIP1	ENST00000359742	human	ensembl	74_37	-1	known	missense	c.2675	p.S892F	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	GRIP1	HGNC	ENSG00000155974				184	0	0	143	70	32.8638
LGR5	0	genome.wustl.edu	37	12	71974201	71974201	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	71974201	71974201	A	G	SNP	LGR5	ENST00000266674	human	ensembl	74_37	+1	known	missense	c.1550	p.Q517R	1.000	NULL	pfam_Leu-rich_rpt,pfam_GPCR_Rhodpsn,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	LGR5	HGNC	ENSG00000139292				177	0	0	134	75	35.8852
ACSM4	0	genome.wustl.edu	37	12	7475033	7475033	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	7475033	7475033	C	T	SNP	ACSM4	ENST00000399422	human	ensembl	74_37	+1	novel	missense	c.1021	p.R341W	0.002	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM4	HGNC	ENSG00000215009				49	0	0	50	9	15.2542
NAP1L1	0	genome.wustl.edu	37	12	76461164	76461164	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	76461164	76461164	C	T	SNP	NAP1L1	ENST00000261182	human	ensembl	74_37	-1	known	missense	c.193	p.G65R	1.000	NULL	pfam_NAP_family	-	no_errors	NAP1L1	HGNC	ENSG00000187109				69	0	0	64	31	32.6316
CD163	0	genome.wustl.edu	37	12	7649629	7649629	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	7649629	7649629	G	A	SNP	CD163	ENST00000359156	human	ensembl	74_37	-1	known	silent	c.879	p.D293	0.001	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_SRCR,pfscan_SRCR	-	no_errors	CD163	HGNC	ENSG00000177575				67	0	0	44	22	33.3333
E2F7	0	genome.wustl.edu	37	12	77440093	77440093	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	77440093	77440093	C	T	SNP	E2F7	ENST00000322886	human	ensembl	74_37	-1	known	missense	c.554	p.R185H	1.000	pfam_E2F_TDP	pfam_E2F_TDP	-	no_errors	E2F7	HGNC	ENSG00000165891				40	0	0	45	20	30.7692
TMTC2	0	genome.wustl.edu	37	12	83324294	83324294	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	83324294	83324294	G	A	SNP	TMTC2	ENST00000321196	human	ensembl	74_37	+1	known	missense	c.1568	p.R523H	1.000	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,pfam_TPR_2,pfam_DUF1736,pfam_TPR-4,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC2	HGNC	ENSG00000179104				61	0	0	36	16	30.7692
SLC6A15	0	genome.wustl.edu	37	12	85266867	85266867	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	85266867	85266867	G	A	SNP	SLC6A15	ENST00000266682	human	ensembl	74_37	-1	known	nonsense	c.1108	p.Q370*	0.365	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_orphan	-	no_errors	SLC6A15	HGNC	ENSG00000072041				48	0	0	51	8	13.5593
LRRIQ1	0	genome.wustl.edu	37	12	85547850	85547850	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	85547850	85547850	G	A	SNP	LRRIQ1	ENST00000393217	human	ensembl	74_37	+1	known	silent	c.4698	p.S1566	0.884	NULL	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,smart_Leu-rich_rpt_typical-subtyp,pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ1	HGNC	ENSG00000133640				22	0	0	19	11	36.6667
KLRG1	0	genome.wustl.edu	37	12	9144878	9144878	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	9144878	9144878	G	A	SNP	KLRG1	ENST00000266551	human	ensembl	74_37	+1	known	silent	c.159	p.V53	0.180	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	KLRG1	HGNC	ENSG00000139187				150	0	0	115	46	28.5714
KERA	0	genome.wustl.edu	37	12	91449951	91449951	+	Silent	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	91449951	91449951	A	G	SNP	KERA	ENST00000266719	human	ensembl	74_37	-1	known	silent	c.108	p.T36	0.000	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	KERA	HGNC	ENSG00000139330				48	0	0	69	5	6.75676
A2M	0	genome.wustl.edu	37	12	9231878	9231878	+	Silent	SNP	G	G	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	9231878	9231878	G	T	SNP	A2M	ENST00000318602	human	ensembl	74_37	-1	known	silent	c.3081	p.T1027	0.996	pfam_A2M_comp,superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,superfamily_Beta-lactam/transpept-like,superfamily_Cupredoxin	-	no_errors	A2M	HGNC	ENSG00000175899				39	0	0	31	15	32.6087
A2M	0	genome.wustl.edu	37	12	9246145	9246145	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	9246145	9246145	C	T	SNP	A2M	ENST00000318602	human	ensembl	74_37	-1	known	missense	c.2156	p.R719H	0.000	NULL	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,superfamily_Beta-lactam/transpept-like,superfamily_Cupredoxin	-	no_errors	A2M	HGNC	ENSG00000175899				37	0	0	34	14	29.1667
PZP	0	genome.wustl.edu	37	12	9318694	9318694	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	9318694	9318694	G	A	SNP	PZP	ENST00000261336	human	ensembl	74_37	-1	known	nonsense	c.2212	p.R738*	0.038	NULL	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_SV_autoAg,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	PZP	HGNC	ENSG00000126838				163	0	0	103	63	37.9518
PZP	0	genome.wustl.edu	37	12	9353635	9353635	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	9353635	9353635	C	A	SNP	PZP	ENST00000261336	human	ensembl	74_37	-1	known	missense	c.523	p.A175S	0.004	pfam_A2M_N	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_SV_autoAg,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	PZP	HGNC	ENSG00000126838				108	0	0	74	22	22.9167
NALCN	0	genome.wustl.edu	37	13	101710303	101710303	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	13	101710303	101710303	G	A	SNP	NALCN	ENST00000251127	human	ensembl	74_37	-1	known	missense	c.5011	p.R1671C	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	NALCN	HGNC	ENSG00000102452				63	0	0	69	11	13.75
MYO16	0	genome.wustl.edu	37	13	109459100	109459100	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	13	109459100	109459100	T	C	SNP	MYO16	ENST00000356711	human	ensembl	74_37	+1	known	missense	c.749	p.I250T	0.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Myosin_head_motor_dom,pfam_Ankyrin_rpt,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Myosin_head_motor_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO16	HGNC	ENSG00000041515				40	0	0	58	4	6.45161
SOX1	0	genome.wustl.edu	37	13	112722004	112722004	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	13	112722004	112722004	A	G	SNP	SOX1	ENST00000330949	human	ensembl	74_37	+1	known	missense	c.32	p.H11R	0.999	NULL	pfam_HMG_box_dom,pfam_TF_SOX,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX1	HGNC	ENSG00000182968				11	0	0	6	4	40
TMCO3	0	genome.wustl.edu	37	13	114174950	114174950	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	13	114174950	114174950	C	T	SNP	TMCO3	ENST00000434316	human	ensembl	74_37	+1	known	silent	c.1245	p.T415	0.120	pfam_Cation/H_exchanger	pfam_Cation/H_exchanger	-	no_errors	TMCO3	HGNC	ENSG00000150403				57	0	0	43	24	35.8209
MPHOSPH8	0	genome.wustl.edu	37	13	20235889	20235889	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	13	20235889	20235889	G	A	SNP	MPHOSPH8	ENST00000414242	human	ensembl	74_37	+1	known	missense	c.1843	p.D615N	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Chromo_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Chromo_domain/shadow	-	no_errors	MPHOSPH8	HGNC	ENSG00000196199				149	0	0	111	47	29.7468
ZDHHC20	0	genome.wustl.edu	37	13	21976959	21976959	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	13	21976959	21976959	C	T	SNP	ZDHHC20	ENST00000400590	human	ensembl	74_37	-1	known	silent	c.417	p.A139	0.013	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC20	HGNC	ENSG00000180776				27	0	0	24	6	20
MICU2	0	genome.wustl.edu	37	13	22113448	22113448	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	13	22113448	22113448	G	A	SNP	MICU2	ENST00000382374	human	ensembl	74_37	-1	known	silent	c.459	p.G153	0.976	NULL	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	MICU2	HGNC	ENSG00000165487				43	0	0	28	8	22.2222
ATP8A2	0	genome.wustl.edu	37	13	26151257	26151257	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	13	26151257	26151257	G	A	SNP	ATP8A2	ENST00000381655	human	ensembl	74_37	+1	known	missense	c.1763	p.R588Q	0.998	superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP8A2	HGNC	ENSG00000132932				120	0	0	85	33	27.9661
HSPH1	0	genome.wustl.edu	37	13	31729764	31729764	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	13	31729764	31729764	A	T	SNP	HSPH1	ENST00000445273	human	ensembl	74_37	-1	known	missense	c.199	p.S67T	0.996	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPH1	HGNC	ENSG00000120694				88	0	0	90	30	25
N4BP2L2	0	genome.wustl.edu	37	13	33092117	33092117	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	13	33092117	33092117	C	T	SNP	N4BP2L2	ENST00000399396	human	ensembl	74_37	-1	known	missense	c.287	p.R96Q	1.000	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	N4BP2L2	HGNC	ENSG00000244754				45	0	0	25	15	37.5
TRPC4	0	genome.wustl.edu	37	13	38266432	38266432	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	13	38266432	38266432	C	T	SNP	TRPC4	ENST00000379681	human	ensembl	74_37	-1	known	missense	c.938	p.R313H	1.000	tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC4_channel,prints_TRPC_channel,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	-	no_errors	TRPC4	HGNC	ENSG00000133107				42	0	0	22	5	18.5185
FREM2	0	genome.wustl.edu	37	13	39262147	39262147	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	13	39262147	39262147	C	T	SNP	FREM2	ENST00000280481	human	ensembl	74_37	+1	known	silent	c.666	p.S222	0.001	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893				17	0	0	19	4	17.3913
FREM2	0	genome.wustl.edu	37	13	39422774	39422774	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	13	39422774	39422774	G	A	SNP	FREM2	ENST00000280481	human	ensembl	74_37	+1	known	missense	c.6346	p.A2116T	1.000	smart_Calx_beta	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893				39	0	0	26	16	38.0952
VWA8	0	genome.wustl.edu	37	13	42277527	42277527	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	13	42277527	42277527	G	A	SNP	VWA8	ENST00000379310	human	ensembl	74_37	-1	known	missense	c.3137	p.T1046M	0.990	NULL	pfam_ATPase_dyneun-rel_AAA,pfam_VWF_A,superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA8	HGNC	ENSG00000102763				38	0	0	39	21	35
DGKH	0	genome.wustl.edu	37	13	42742861	42742861	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	13	42742861	42742861	G	A	SNP	DGKH	ENST00000337343	human	ensembl	74_37	+1	known	missense	c.1274	p.R425Q	0.995	pfam_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kinase_cat_dom	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_SAM_2,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_SAM_type1,superfamily_SAM/pointed,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_SAM,pfscan_Pleckstrin_homology,pfscan_SAM,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKH	HGNC	ENSG00000102780				129	0	0	102	57	35.8491
ZC3H13	0	genome.wustl.edu	37	13	46543351	46543351	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	13	46543351	46543351	C	T	SNP	ZC3H13	ENST00000242848	human	ensembl	74_37	-1	known	missense	c.3328	p.A1110T	0.016	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H13	HGNC	ENSG00000123200				25	0	0	13	18	58.0645
ZC3H13	0	genome.wustl.edu	37	13	46559533	46559533	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	13	46559533	46559533	C	T	SNP	ZC3H13	ENST00000242848	human	ensembl	74_37	-1	known	missense	c.1619	p.R540H	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H13	HGNC	ENSG00000123200				63	0	0	56	26	31.7073
ZC3H13	0	genome.wustl.edu	37	13	46616316	46616316	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	13	46616316	46616316	A	G	SNP	ZC3H13	ENST00000242848	human	ensembl	74_37	-1	known	missense	c.322	p.S108P	0.943	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H13	HGNC	ENSG00000123200				65	0	0	57	22	27.8481
RCBTB1	0	genome.wustl.edu	37	13	50125518	50125518	+	Silent	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	13	50125518	50125518	T	C	SNP	RCBTB1	ENST00000258646	human	ensembl	74_37	-1	known	silent	c.798	p.G266	1.000	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,pfscan_Reg_chr_condens,prints_Reg_chr_condens	pfam_Reg_chr_condens,pfam_BTB_POZ,superfamily_RCC1/BLIP-II,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	RCBTB1	HGNC	ENSG00000136144				89	0	0	56	36	39.1304
TDRD3	0	genome.wustl.edu	37	13	61102603	61102603	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	13	61102603	61102603	G	A	SNP	TDRD3	ENST00000535286	human	ensembl	74_37	+1	known	missense	c.1244	p.R415Q	1.000	NULL	pfam_DUF1767,pfam_Tudor,pfam_Survival_motor_neuron,pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,smart_Tudor,pfscan_Tudor,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	TDRD3	HGNC	ENSG00000083544				114	0	0	95	41	30.1471
BORA	0	genome.wustl.edu	37	13	73320743	73320743	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	13	73320743	73320743	C	T	SNP	BORA	ENST00000390667	human	ensembl	74_37	+1	known	missense	c.976	p.P326S	1.000	NULL	prints_Aurora_borealis_protien	-	no_errors	BORA	HGNC	ENSG00000136122				75	0	0	69	34	33.0097
MIR622	0	genome.wustl.edu	37	13	90883462	90883462	+	RNA	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	13	90883462	90883462	A	G	SNP	MIR622	ENST00000385123	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.974	-	-	-	no_errors	MIR622	HGNC	ENSG00000207858				42	0	0	31	15	32.6087
GPR180	0	genome.wustl.edu	37	13	95279412	95279412	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	13	95279412	95279412	G	A	SNP	GPR180	ENST00000376958	human	ensembl	74_37	+1	known	missense	c.1310	p.R437H	1.000	NULL	pfam_Intimal_thickness-rel_rcpt,pfam_TM_rcpt_euk	-	no_errors	GPR180	HGNC	ENSG00000152749				61	0	0	38	17	30.9091
HS6ST3	0	genome.wustl.edu	37	13	96743551	96743551	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	13	96743551	96743551	C	T	SNP	HS6ST3	ENST00000376705	human	ensembl	74_37	+1	known	silent	c.435	p.R145	1.000	pfam_Sulfotransferase,superfamily_P-loop_NTPase	pfam_Sulfotransferase,superfamily_P-loop_NTPase	-	no_errors	HS6ST3	HGNC	ENSG00000185352				31	0	0	17	7	29.1667
FARP1	0	genome.wustl.edu	37	13	99092253	99092253	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	13	99092253	99092253	C	A	SNP	FARP1	ENST00000376586	human	ensembl	74_37	+1	known	nonsense	c.2565	p.C855*	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM-adjacent,pfam_FERM_central,superfamily_DH-domain,superfamily_FERM_central,smart_Band_41_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_FERM_domain,pfscan_Pleckstrin_homology,pfscan_DH-domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	FARP1	HGNC	ENSG00000152767				118	0	0	119	10	7.75194
DYNC1H1	0	genome.wustl.edu	37	14	102449771	102449771	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	102449771	102449771	A	G	SNP	DYNC1H1	ENST00000360184	human	ensembl	74_37	+1	known	missense	c.1286	p.K429R	1.000	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like,smart_AAA+_ATPase	-	no_errors	DYNC1H1	HGNC	ENSG00000197102				44	0	0	61	4	6.15385
CEP170B	0	genome.wustl.edu	37	14	105346747	105346747	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	105346747	105346747	C	T	SNP	CEP170B	ENST00000453495	human	ensembl	74_37	+1	known	missense	c.457	p.R153W	0.997	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	CEP170B	HGNC	ENSG00000099814				19	0	0	22	7	24.1379
AHNAK2	0	genome.wustl.edu	37	14	105418818	105418818	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	105418818	105418818	G	A	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	silent	c.2970	p.D990	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				365	2	0.544959	271	114	29.6104
TEP1	0	genome.wustl.edu	37	14	20854765	20854765	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	20854765	20854765	A	C	SNP	TEP1	ENST00000262715	human	ensembl	74_37	-1	known	missense	c.2702	p.L901R	1.000	NULL	pfam_TROVE,pfam_TEP1_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pfscan_NACHT_NTPase,pfscan_TROVE,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TEP1	HGNC	ENSG00000129566				25	0	0	19	12	38.7097
OSGEP	0	genome.wustl.edu	37	14	20916315	20916315	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	20916315	20916315	T	C	SNP	OSGEP	ENST00000206542	human	ensembl	74_37	-1	known	missense	c.652	p.M218V	1.000	pfam_Gcp-like_dom,tigrfam_KAE1/YgjD	pfam_Gcp-like_dom,prints_KAE1/YgjD,tigrfam_KAE1/YgjD	-	no_errors	OSGEP	HGNC	ENSG00000092094				188	0	0	156	81	34.1772
EDDM3B	0	genome.wustl.edu	37	14	21238745	21238745	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	21238745	21238745	G	A	SNP	EDDM3B	ENST00000326783	human	ensembl	74_37	+1	known	missense	c.436	p.G146S	0.000	NULL	pfam_RNaseA_domain,superfamily_RNaseA_domain,smart_RNaseA_domain	-	no_errors	EDDM3B	HGNC	ENSG00000181552				53	0	0	40	27	40.2985
CHD8	0	genome.wustl.edu	37	14	21899124	21899124	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	21899124	21899124	T	C	SNP	CHD8	ENST00000399982	human	ensembl	74_37	-1	known	missense	c.679	p.K227E	1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_BRK_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD8	HGNC	ENSG00000100888				20	0	0	38	2	5
RAB2B	0	genome.wustl.edu	37	14	21936840	21936840	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	21936840	21936840	G	A	SNP	RAB2B	ENST00000397762	human	ensembl	74_37	-1	known	silent	c.258	p.Y86	0.968	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB2B	HGNC	ENSG00000129472				95	0	0	100	7	6.54206
HOMEZ	0	genome.wustl.edu	37	14	23745054	23745054	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	23745054	23745054	C	T	SNP	HOMEZ	ENST00000431326	human	ensembl	74_37	-1	known	silent	c.1389	p.P463	0.007	superfamily_Homeodomain-like	superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	HOMEZ	HGNC	ENSG00000215271				58	0	0	38	8	17.3913
MYH7	0	genome.wustl.edu	37	14	23887443	23887443	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	23887443	23887443	C	T	SNP	MYH7	ENST00000355349	human	ensembl	74_37	-1	known	missense	c.4145	p.R1382Q	1.000	pfam_Myosin_tail,superfamily_Prefoldin	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7	HGNC	ENSG00000092054				121	0	0	79	52	39.6947
LRRC16B	0	genome.wustl.edu	37	14	24525864	24525864	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	24525864	24525864	T	C	SNP	LRRC16B	ENST00000342740	human	ensembl	74_37	+1	known	missense	c.899	p.F300S	1.000	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC16B	HGNC	ENSG00000186648				67	0	0	45	22	32.8358
TGM1	0	genome.wustl.edu	37	14	24729876	24729876	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	24729876	24729876	C	T	SNP	TGM1	ENST00000206765	human	ensembl	74_37	-1	known	silent	c.537	p.T179	0.998	pfam_Transglutaminase_N,superfamily_Ig_E-set	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM1	HGNC	ENSG00000092295				66	0	0	65	31	32.2917
LTB4R2	0	genome.wustl.edu	37	14	24780931	24780931	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	24780931	24780931	C	T	SNP	LTB4R2	ENST00000528054	human	ensembl	74_37	+1	known	missense	c.1154	p.P385L	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Leukotriene_B4_typ-2_rcpt,prints_Leukotriene_B4_rcpt,prints_GPCR_Rhodpsn	-	no_errors	LTB4R2	Uniprot_gn	ENSG00000272658				28	0	0	14	13	48.1481
NYNRIN	0	genome.wustl.edu	37	14	24880323	24880323	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	24880323	24880323	T	C	SNP	NYNRIN	ENST00000382554	human	ensembl	74_37	+1	known	missense	c.2456	p.M819T	1.000	pfam_RNase_Zc3h12	pfam_RNase_Zc3h12,superfamily_RNaseH-like_dom,pfscan_Integrase_cat-core	-	no_errors	NYNRIN	HGNC	ENSG00000205978				69	0	0	61	29	32.2222
NYNRIN	0	genome.wustl.edu	37	14	24884436	24884436	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	24884436	24884436	C	T	SNP	NYNRIN	ENST00000382554	human	ensembl	74_37	+1	known	missense	c.3481	p.R1161C	0.820	NULL	pfam_RNase_Zc3h12,superfamily_RNaseH-like_dom,pfscan_Integrase_cat-core	-	no_errors	NYNRIN	HGNC	ENSG00000205978				45	0	0	28	16	36.3636
STRN3	0	genome.wustl.edu	37	14	31424869	31424869	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	31424869	31424869	C	T	SNP	STRN3	ENST00000357479	human	ensembl	74_37	-1	known	silent	c.417	p.T139	1.000	pfam_Striatin_N	pfam_Striatin_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	STRN3	HGNC	ENSG00000196792				37	0	0	51	14	21.5385
HECTD1	0	genome.wustl.edu	37	14	31575978	31575978	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	31575978	31575978	G	A	SNP	HECTD1	ENST00000399332	human	ensembl	74_37	-1	known	missense	c.7100	p.A2367V	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_Sad1_UNC_C,pfam_Mib_Herc2,pfam_Ankyrin_rpt,superfamily_HECT,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,superfamily_Galactose-bd-like,smart_Ankyrin_rpt,smart_HECT,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_HECT	-	no_errors	HECTD1	HGNC	ENSG00000092148				53	0	0	66	4	5.71429
EAPP	0	genome.wustl.edu	37	14	34985626	34985626	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	34985626	34985626	C	T	SNP	EAPP	ENST00000250454	human	ensembl	74_37	-1	known	missense	c.748	p.V250M	0.928	pfam_E2F-assoc_phosphoprotein	pfam_E2F-assoc_phosphoprotein	-	no_errors	EAPP	HGNC	ENSG00000129518				163	0	0	127	68	34.8718
NKX2-1	0	genome.wustl.edu	37	14	36987203	36987203	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	36987203	36987203	C	T	SNP	NKX2-1	ENST00000354822	human	ensembl	74_37	-1	known	silent	c.486	p.A162	0.998	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	NKX2-1	HGNC	ENSG00000136352				20	0	0	12	4	25
FSCB	0	genome.wustl.edu	37	14	44974717	44974717	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	44974717	44974717	G	A	SNP	FSCB	ENST00000340446	human	ensembl	74_37	-1	known	missense	c.1474	p.R492W	0.013	NULL	NULL	-	no_errors	FSCB	HGNC	ENSG00000189139				39	0	0	24	18	42.8571
FAM179B	0	genome.wustl.edu	37	14	45478141	45478141	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	45478141	45478141	G	A	SNP	FAM179B	ENST00000361577	human	ensembl	74_37	+1	known	missense	c.2930	p.R977H	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FAM179B	HGNC	ENSG00000198718				67	0	0	74	33	30.8411
TMX1	0	genome.wustl.edu	37	14	51710663	51710663	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	51710663	51710663	C	T	SNP	TMX1	ENST00000457354	human	ensembl	74_37	+1	known	missense	c.242	p.A81V	1.000	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TMX1	HGNC	ENSG00000139921				27	0	0	34	15	30.6122
ATG14	0	genome.wustl.edu	37	14	55836420	55836420	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	55836420	55836420	C	T	SNP	ATG14	ENST00000247178	human	ensembl	74_37	-1	known	missense	c.1396	p.A466T	0.487	NULL	pfam_UV_resistance/autophagy_Atg14	-	no_errors	ATG14	HGNC	ENSG00000126775				63	0	0	52	20	27.7778
SYT16	0	genome.wustl.edu	37	14	62547711	62547711	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	62547711	62547711	G	A	SNP	SYT16	ENST00000430451	human	ensembl	74_37	+1	novel	missense	c.1153	p.V385I	0.716	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	SYT16	HGNC	ENSG00000139973				24	0	0	15	3	16.6667
SYNE2	0	genome.wustl.edu	37	14	64634309	64634309	+	Silent	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	64634309	64634309	T	C	SNP	SYNE2	ENST00000358025	human	ensembl	74_37	+1	known	silent	c.16857	p.D5619	0.000	smart_Spectrin/alpha-actinin	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654				77	0	0	63	33	34.375
PLEK2	0	genome.wustl.edu	37	14	67862133	67862133	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	67862133	67862133	C	T	SNP	PLEK2	ENST00000216446	human	ensembl	74_37	-1	known	silent	c.375	p.P125	0.615	NULL	pfam_Pleckstrin_homology,pfam_DEP_dom,smart_Pleckstrin_homology,smart_DEP_dom,pfscan_DEP_dom,pfscan_Pleckstrin_homology	-	no_errors	PLEK2	HGNC	ENSG00000100558				47	0	0	32	12	27.2727
GALNT16	0	genome.wustl.edu	37	14	69795198	69795198	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	69795198	69795198	C	T	SNP	GALNT16	ENST00000337827	human	ensembl	74_37	+1	known	silent	c.600	p.D200	0.011	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT16	HGNC	ENSG00000100626				48	0	0	39	13	25
PCNX	0	genome.wustl.edu	37	14	71542931	71542931	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	71542931	71542931	C	T	SNP	PCNX	ENST00000304743	human	ensembl	74_37	+1	known	missense	c.5132	p.S1711L	1.000	NULL	pfam_Pecanex	-	no_errors	PCNX	HGNC	ENSG00000100731				88	0	0	80	29	26.6055
PAPLN	0	genome.wustl.edu	37	14	73729153	73729153	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	73729153	73729153	C	T	SNP	PAPLN	ENST00000427855	human	ensembl	74_37	+1	known	missense	c.2341	p.R781C	1.000	pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	pfam_Ig_I-set,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_Prot_inh_Kunz-m,pfam_PLAC,superfamily_Prot_inh_Kunz-m,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Prot_inh_Kunz-m,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Prot_inh_Kunz-m,pfscan_Ig-like_dom,prints_Peptidase_M12B_ADAM-TS,prints_Prot_inh_Kunz-m	-	no_errors	PAPLN	HGNC	ENSG00000100767				22	0	0	13	8	38.0952
FAM161B	0	genome.wustl.edu	37	14	74413287	74413287	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	74413287	74413287	C	T	SNP	FAM161B	ENST00000286544	human	ensembl	74_37	-1	known	missense	c.265	p.A89T	0.999	NULL	pfam_UPF0564	-	no_errors	FAM161B	HGNC	ENSG00000156050				78	0	0	64	32	33.3333
YLPM1	0	genome.wustl.edu	37	14	75296006	75296006	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	75296006	75296006	A	G	SNP	YLPM1	ENST00000325680	human	ensembl	74_37	+1	known	missense	c.6254	p.D2085G	1.000	NULL	superfamily_P-loop_NTPase	-	no_errors	YLPM1	HGNC	ENSG00000119596				93	0	0	84	34	28.8136
DLST	0	genome.wustl.edu	37	14	75367834	75367834	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	75367834	75367834	C	T	SNP	DLST	ENST00000334220	human	ensembl	74_37	+1	known	silent	c.1125	p.G375	0.001	pfam_2-oxoacid_DH_actylTfrase,tigrfam_SucB	pfam_2-oxoacid_DH_actylTfrase,pfam_Biotin_lipoyl,superfamily_Single_hybrid_motif,pfscan_Biotin_lipoyl,tigrfam_SucB	-	no_errors	DLST	HGNC	ENSG00000119689				74	0	0	47	27	36.4865
BATF	0	genome.wustl.edu	37	14	76012944	76012944	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	76012944	76012944	C	T	SNP	BATF	ENST00000286639	human	ensembl	74_37	+1	known	missense	c.308	p.P103L	1.000	NULL	pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP,prints_Leuzip_Fos	-	no_errors	BATF	HGNC	ENSG00000156127				32	0	0	21	7	25
TTLL5	0	genome.wustl.edu	37	14	76368503	76368503	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	76368503	76368503	G	A	SNP	TTLL5	ENST00000298832	human	ensembl	74_37	+1	known	silent	c.3759	p.G1253	1.000	NULL	pfam_TTL/TTLL_fam	-	no_errors	TTLL5	HGNC	ENSG00000119685				62	0	0	40	24	37.5
ESRRB	0	genome.wustl.edu	37	14	76928920	76928920	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	76928920	76928920	G	A	SNP	ESRRB	ENST00000380887	human	ensembl	74_37	+1	known	missense	c.430	p.E144K	1.000	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	ESRRB	HGNC	ENSG00000119715				57	0	0	34	17	33.3333
ISM2	0	genome.wustl.edu	37	14	77942189	77942189	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	77942189	77942189	C	T	SNP	ISM2	ENST00000342219	human	ensembl	74_37	-1	known	missense	c.1465	p.A489T	0.986	pfam_AMOP,smart_AMOP,pfscan_AMOP	pfam_AMOP,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_AMOP,pfscan_AMOP,pfscan_Thrombospondin_1_rpt	-	no_errors	ISM2	HGNC	ENSG00000100593				35	0	0	16	6	27.2727
KCNK10	0	genome.wustl.edu	37	14	88729810	88729810	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	88729810	88729810	C	T	SNP	KCNK10	ENST00000312350	human	ensembl	74_37	-1	known	silent	c.138	p.P46	0.905	NULL	pfam_2pore_dom_K_chnl_dom,prints_2pore_dom_K_chnl_TREK,prints_2pore_dom_K_chnl,prints_2pore_dom_K_chnl_TRAAK,prints_2pore_dom_K_chnl_TASK	-	no_errors	KCNK10	HGNC	ENSG00000100433				70	0	0	54	15	21.7391
TDP1	0	genome.wustl.edu	37	14	90509501	90509501	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	90509501	90509501	C	A	SNP	TDP1	ENST00000555880	human	ensembl	74_37	+1	novel	missense	c.1732	p.L578M	0.000	NULL	pfam_Tyr-DNA_phospho	-	no_errors	TDP1	HGNC	ENSG00000042088				35	0	0	30	13	30.2326
TTC7B	0	genome.wustl.edu	37	14	91247111	91247111	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	91247111	91247111	C	T	SNP	TTC7B	ENST00000357056	human	ensembl	74_37	-1	known	missense	c.416	p.R139Q	0.998	NULL	pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC7B	HGNC	ENSG00000165914				44	0	0	46	21	31.3433
UNC79	0	genome.wustl.edu	37	14	94087971	94087971	+	Silent	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	94087971	94087971	A	G	SNP	UNC79	ENST00000553484	human	ensembl	74_37	+1	known	silent	c.4458	p.E1486	1.000	superfamily_ARM-type_fold	superfamily_P-loop_NTPase,superfamily_ARM-type_fold	-	no_errors	UNC79	HGNC	ENSG00000133958				76	0	0	51	26	33.7662
PPP4R4	0	genome.wustl.edu	37	14	94674876	94674876	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	94674876	94674876	G	A	SNP	PPP4R4	ENST00000304338	human	ensembl	74_37	+1	known	silent	c.267	p.T89	0.990	superfamily_ARM-type_fold	superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	PPP4R4	HGNC	ENSG00000119698				40	0	0	34	13	27.6596
SERPINA12	0	genome.wustl.edu	37	14	94964713	94964713	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	94964713	94964713	C	T	SNP	SERPINA12	ENST00000341228	human	ensembl	74_37	-1	known	missense	c.22	p.A8T	0.304	superfamily_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINA12	HGNC	ENSG00000165953				101	0	0	75	39	34.2105
SERPINA5	0	genome.wustl.edu	37	14	95053815	95053815	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	95053815	95053815	C	T	SNP	SERPINA5	ENST00000329597	human	ensembl	74_37	+1	known	missense	c.116	p.T39M	0.000	superfamily_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINA5	HGNC	ENSG00000188488				49	0	0	28	13	31.7073
DNM1P46	0	genome.wustl.edu	37	15	100331866	100331866	+	RNA	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	100331866	100331866	T	C	SNP	DNM1P46	ENST00000341853	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.972	-	-	-	no_errors	DNM1P46	HGNC	ENSG00000182397				38	0	0	30	17	36.1702
ADAMTS17	0	genome.wustl.edu	37	15	100695507	100695507	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	100695507	100695507	G	A	SNP	ADAMTS17	ENST00000268070	human	ensembl	74_37	-1	known	silent	c.1200	p.D400	0.920	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS17	HGNC	ENSG00000140470				29	0	0	24	8	25
ADAMTS17	0	genome.wustl.edu	37	15	100821466	100821466	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	100821466	100821466	C	T	SNP	ADAMTS17	ENST00000268070	human	ensembl	74_37	-1	known	missense	c.757	p.A253T	0.995	pfscan_Peptidase_M12B	pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS17	HGNC	ENSG00000140470				77	0	0	38	18	32.1429
LRRK1	0	genome.wustl.edu	37	15	101588759	101588759	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	101588759	101588759	A	C	SNP	LRRK1	ENST00000388948	human	ensembl	74_37	+1	known	missense	c.3196	p.T1066P	0.977	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Leu-rich_rpt,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,superfamily_WD40_repeat_dom,smart_Ankyrin_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_dom	-	no_errors	LRRK1	HGNC	ENSG00000154237				123	0	0	106	56	34.5679
CHSY1	0	genome.wustl.edu	37	15	101717570	101717570	+	RNA	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	101717570	101717570	G	A	SNP	CHSY1	ENST00000543813	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	CHSY1	HGNC	ENSG00000131873				31	0	0	28	22	44
DNM1P47	0	genome.wustl.edu	37	15	102304883	102304883	+	RNA	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	102304883	102304883	C	T	SNP	DNM1P47	ENST00000561463	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DNM1P47	HGNC	ENSG00000259660				42	0	0	35	17	32.6923
GOLGA6L2	0	genome.wustl.edu	37	15	23689630	23689630	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	23689630	23689630	C	T	SNP	GOLGA6L2	ENST00000312015	human	ensembl	74_37	-1	known	silent	c.231	p.A77	0.000	NULL	prints_Tropomyosin	-	no_errors	GOLGA6L2	HGNC	ENSG00000174450				51	0	0	44	6	12
SNORD116-8	0	genome.wustl.edu	37	15	25315626	25315626	+	RNA	SNP	C	C	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	25315626	25315626	C	G	SNP	SNORD116-8	ENST00000384365	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SNORD116-8	HGNC	ENSG00000207093				148	1	0.671141	119	37	23.7179
SNHG14	0	genome.wustl.edu	37	15	25488653	25488653	+	RNA	SNP	G	G	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	25488653	25488653	G	T	SNP	SNHG14	ENST00000453082	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNHG14	HGNC	ENSG00000224078				51	0	0	30	29	49.1525
RYR3	0	genome.wustl.edu	37	15	34113561	34113561	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	34113561	34113561	G	A	SNP	RYR3	ENST00000389232	human	ensembl	74_37	+1	known	missense	c.10906	p.A3636T	1.000	superfamily_ARM-type_fold	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838				26	0	0	27	16	37.2093
RYR3	0	genome.wustl.edu	37	15	34145278	34145278	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	34145278	34145278	T	C	SNP	RYR3	ENST00000389232	human	ensembl	74_37	+1	known	missense	c.13661	p.V4554A	1.000	NULL	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838				26	0	0	17	16	48.4848
NUTM1	0	genome.wustl.edu	37	15	34649679	34649679	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	34649679	34649679	G	A	SNP	NUTM1	ENST00000333756	human	ensembl	74_37	+1	known	missense	c.3386	p.R1129H	0.014	NULL	NULL	-	no_errors	NUTM1	HGNC	ENSG00000184507				85	0	0	80	22	21.5686
LPCAT4	0	genome.wustl.edu	37	15	34655878	34655878	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	34655878	34655878	C	T	SNP	LPCAT4	ENST00000314891	human	ensembl	74_37	-1	known	missense	c.695	p.R232H	0.987	smart_Plipid/glycerol_acylTrfase	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase	-	no_errors	LPCAT4	HGNC	ENSG00000176454				50	0	0	40	19	32.2034
INO80	0	genome.wustl.edu	37	15	41366688	41366688	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	41366688	41366688	G	A	SNP	INO80	ENST00000361937	human	ensembl	74_37	-1	known	nonsense	c.1207	p.R403*	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	INO80	HGNC	ENSG00000128908				67	0	0	68	30	30.6122
LTK	0	genome.wustl.edu	37	15	41804949	41804949	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	41804949	41804949	C	T	SNP	LTK	ENST00000263800	human	ensembl	74_37	-1	known	silent	c.315	p.L105	0.035	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LTK	HGNC	ENSG00000062524				15	0	0	7	5	41.6667
MAPKBP1	0	genome.wustl.edu	37	15	42105236	42105236	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	42105236	42105236	G	A	SNP	MAPKBP1	ENST00000456763	human	ensembl	74_37	+1	known	silent	c.756	p.T252	0.002	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	MAPKBP1	HGNC	ENSG00000137802				118	0	0	93	33	26.1905
CDAN1	0	genome.wustl.edu	37	15	43021275	43021275	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	43021275	43021275	C	A	SNP	CDAN1	ENST00000356231	human	ensembl	74_37	-1	known	missense	c.2591	p.R864L	1.000	NULL	NULL	-	no_errors	CDAN1	HGNC	ENSG00000140326				80	0	0	36	18	33.3333
LCMT2	0	genome.wustl.edu	37	15	43622232	43622232	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	43622232	43622232	G	T	SNP	LCMT2	ENST00000305641	human	ensembl	74_37	-1	known	missense	c.456	p.S152R	0.246	pfam_LCM_MeTrfase	pfam_LCM_MeTrfase	-	no_errors	LCMT2	HGNC	ENSG00000168806				40	0	0	37	7	15.9091
CKMT1B	0	genome.wustl.edu	37	15	43891410	43891410	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	43891410	43891410	G	A	SNP	CKMT1B	ENST00000300283	human	ensembl	74_37	+1	known	missense	c.1193	p.R398Q	1.000	pfam_ATP-guanido_PTrfase_cat	pfam_ATP-guanido_PTrfase_cat,pfam_ATP-guanido_PTrfase_N,superfamily_ATP-guanido_PTrfase_N	-	no_errors	CKMT1B	HGNC	ENSG00000237289				113	0	0	89	38	29.9213
WDR76	0	genome.wustl.edu	37	15	44131849	44131849	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	44131849	44131849	C	T	SNP	WDR76	ENST00000263795	human	ensembl	74_37	+1	known	nonsense	c.655	p.R219*	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR76	HGNC	ENSG00000092470				119	0	0	127	20	13.6054
TRPM7	0	genome.wustl.edu	37	15	50901830	50901830	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	50901830	50901830	C	T	SNP	TRPM7	ENST00000313478	human	ensembl	74_37	-1	known	missense	c.2528	p.R843Q	1.000	NULL	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM7	HGNC	ENSG00000092439				45	0	0	35	11	23.913
GLDN	0	genome.wustl.edu	37	15	51634199	51634199	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	51634199	51634199	C	T	SNP	GLDN	ENST00000335449	human	ensembl	74_37	+1	known	silent	c.318	p.A106	0.016	NULL	pfam_Olfac-like,pfam_Collagen,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	GLDN	HGNC	ENSG00000186417				50	0	0	34	15	30.6122
MYO5C	0	genome.wustl.edu	37	15	52510876	52510876	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	52510876	52510876	T	C	SNP	MYO5C	ENST00000261839	human	ensembl	74_37	-1	known	missense	c.3794	p.E1265G	0.263	NULL	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5C	HGNC	ENSG00000128833				38	0	0	27	9	25
UNC13C	0	genome.wustl.edu	37	15	54793039	54793039	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	54793039	54793039	C	T	SNP	UNC13C	ENST00000260323	human	ensembl	74_37	+1	known	nonsense	c.5164	p.Q1722*	1.000	NULL	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13C	HGNC	ENSG00000137766				52	0	0	32	13	28.8889
PIGB	0	genome.wustl.edu	37	15	55626105	55626105	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	55626105	55626105	C	T	SNP	PIGB	ENST00000164305	human	ensembl	74_37	+1	known	missense	c.694	p.R232C	1.000	pfam_GPI_mannosylTrfase	pfam_GPI_mannosylTrfase	-	no_errors	PIGB	HGNC	ENSG00000069943				29	0	0	24	3	11.1111
CGNL1	0	genome.wustl.edu	37	15	57810601	57810601	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	57810601	57810601	G	A	SNP	CGNL1	ENST00000281282	human	ensembl	74_37	+1	known	missense	c.2621	p.R874Q	0.030	prints_Tropomyosin	pfam_Myosin_tail,prints_Tropomyosin	-	no_errors	CGNL1	HGNC	ENSG00000128849				31	0	0	23	11	32.3529
TLN2	0	genome.wustl.edu	37	15	63054564	63054564	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	63054564	63054564	A	G	SNP	TLN2	ENST00000306829	human	ensembl	74_37	+1	known	missense	c.4873	p.N1625D	1.000	superfamily_Vinculin/catenin	pfam_Talin_cent,pfam_ILWEQ_dom,pfam_Vinculin-bd_dom,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ_dom,pfscan_FERM_domain,pfscan_ILWEQ_dom	-	no_errors	TLN2	HGNC	ENSG00000171914				156	0	0	135	45	25
ZNF609	0	genome.wustl.edu	37	15	64966762	64966762	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	64966762	64966762	G	A	SNP	ZNF609	ENST00000326648	human	ensembl	74_37	+1	known	missense	c.1709	p.R570Q	0.988	NULL	pfscan_Znf_C2H2	-	no_errors	ZNF609	HGNC	ENSG00000180357				79	0	0	72	34	32.0755
ITGA11	0	genome.wustl.edu	37	15	68623337	68623337	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	68623337	68623337	C	A	SNP	ITGA11	ENST00000315757	human	ensembl	74_37	-1	known	missense	c.1883	p.G628V	1.000	smart_Int_alpha_beta-p	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA11	HGNC	ENSG00000137809				24	0	0	9	6	40
MYO9A	0	genome.wustl.edu	37	15	72170488	72170488	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	72170488	72170488	G	A	SNP	MYO9A	ENST00000424560	human	ensembl	74_37	-1	known	missense	c.6037	p.R2013C	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO9A	HGNC	ENSG00000066933				75	0	0	86	6	6.52174
PKM	0	genome.wustl.edu	37	15	72502148	72502148	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	72502148	72502148	A	G	SNP	PKM	ENST00000319622	human	ensembl	74_37	-1	known	missense	c.431	p.L144P	0.988	pfam_Pyrv_Knase_brl,superfamily_Pyrv/PenolPyrv_Kinase-like_dom,superfamily_Pyrv_Knase-like_insert_dom,tigrfam_Pyr_Knase	pfam_Pyrv_Knase_brl,pfam_Pyrv_Knase_C,superfamily_Pyrv/PenolPyrv_Kinase-like_dom,superfamily_Pyrv_Knase_C,superfamily_Pyrv_Knase-like_insert_dom,prints_Pyr_Knase,tigrfam_Pyr_Knase	-	no_errors	PKM	HGNC	ENSG00000067225				161	0	0	141	9	6
PML	0	genome.wustl.edu	37	15	74315711	74315711	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	74315711	74315711	G	A	SNP	PML	ENST00000268058	human	ensembl	74_37	+1	known	missense	c.1145	p.R382H	0.610	pfam_DUF3583	pfam_DUF3583,pfam_Znf_B-box,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	PML	HGNC	ENSG00000140464				26	0	0	23	7	23.3333
ISLR2	0	genome.wustl.edu	37	15	74425791	74425791	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	74425791	74425791	G	A	SNP	ISLR2	ENST00000361742	human	ensembl	74_37	+1	known	silent	c.696	p.P232	0.995	NULL	pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Ig-like_dom	-	no_errors	ISLR2	HGNC	ENSG00000167178				30	0	0	20	14	41.1765
SIN3A	0	genome.wustl.edu	37	15	75692403	75692403	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	75692403	75692403	C	T	SNP	SIN3A	ENST00000360439	human	ensembl	74_37	-1	known	missense	c.1832	p.R611H	1.000	pfam_HDAC_interact,smart_HDAC_interact	pfam_PAH,pfam_HDAC_interact,superfamily_PAH,smart_HDAC_interact	-	no_errors	SIN3A	HGNC	ENSG00000169375				129	0	0	92	41	30.8271
ENSG00000187812	0	genome.wustl.edu	37	15	76075484	76075484	+	RNA	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	76075484	76075484	C	T	SNP	ENSG00000187812	ENST00000395215	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.177	-	-	-	no_errors	RP11-24M17.5	Clone_based_vega_gene	ENSG00000187812				130	0	0	95	50	34.4828
LOC645752	0	genome.wustl.edu	37	15	78213901	78213901	+	RNA	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	78213901	78213901	C	T	SNP	LOC645752	ENST00000567226	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.976	-	-	-	no_errors	RP11-114H24.2	Clone_based_vega_gene	ENSG00000260776				105	0	0	83	55	39.8551
IREB2	0	genome.wustl.edu	37	15	78780136	78780136	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	78780136	78780136	G	A	SNP	IREB2	ENST00000258886	human	ensembl	74_37	+1	known	missense	c.1771	p.A591T	0.998	pfam_Acoase/IPM_deHydtase_lsu_aba,superfamily_Acoase/IPM_deHydtase_lsu_aba,tigrfam_Aconitase/Fe_reg_prot_2	pfam_Acoase/IPM_deHydtase_lsu_aba,pfam_AconitaseA/IPMdHydase_ssu_swvl,superfamily_Acoase/IPM_deHydtase_lsu_aba,superfamily_Aconitase/3IPM_dehydase_swvl,prints_Acoase/IPM_deHydtase_lsu_aba,tigrfam_Aconitase/Fe_reg_prot_2	-	no_errors	IREB2	HGNC	ENSG00000136381				44	0	0	32	5	13.5135
RASGRF1	0	genome.wustl.edu	37	15	79356791	79356791	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	79356791	79356791	G	A	SNP	RASGRF1	ENST00000419573	human	ensembl	74_37	-1	known	silent	c.354	p.D118	0.999	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,superfamily_DH-domain,smart_Pleckstrin_homology,smart_DH-domain,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRF1	HGNC	ENSG00000058335				110	0	0	74	37	33.3333
FAH	0	genome.wustl.edu	37	15	80452206	80452206	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	80452206	80452206	G	A	SNP	FAH	ENST00000261755	human	ensembl	74_37	+1	known	missense	c.301	p.E101K	0.290	pfam_Fumarylacetoacetase_N,superfamily_Fumarylacetoacetase_N,tigrfam_Fumarylacetoacetase	pfam_Fumarylacetoacetase_C,pfam_Fumarylacetoacetase_N,superfamily_Fumarylacetoacetase_C-rel,superfamily_Fumarylacetoacetase_N,tigrfam_Fumarylacetoacetase	-	no_errors	FAH	HGNC	ENSG00000103876				23	0	0	20	11	35.4839
ADAMTSL3	0	genome.wustl.edu	37	15	84611672	84611672	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	84611672	84611672	C	T	SNP	ADAMTSL3	ENST00000286744	human	ensembl	74_37	+1	known	silent	c.2328	p.G776	0.026	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTSL3	HGNC	ENSG00000156218				61	0	0	48	3	5.88235
ALPK3	0	genome.wustl.edu	37	15	85410563	85410563	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	85410563	85410563	T	A	SNP	ALPK3	ENST00000258888	human	ensembl	74_37	+1	known	missense	c.5345	p.M1782K	1.000	pfam_MHCK_EF2_kinase,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	pfam_MHCK_EF2_kinase,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase,pfscan_Ig-like_dom	-	no_errors	ALPK3	HGNC	ENSG00000136383				55	0	0	50	24	32.4324
AKAP13	0	genome.wustl.edu	37	15	86189060	86189060	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	86189060	86189060	T	C	SNP	AKAP13	ENST00000361243	human	ensembl	74_37	+1	known	missense	c.4249	p.F1417L	0.991	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	AKAP13	HGNC	ENSG00000170776				93	0	0	67	23	25.5556
FES	0	genome.wustl.edu	37	15	91428314	91428314	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	91428314	91428314	C	T	SNP	FES	ENST00000328850	human	ensembl	74_37	+1	known	silent	c.39	p.H13	0.985	pirsf_Tyr_kinase_non-rcpt_Fes_subgr,pfam_FCH_dom,smart_FCH_dom,pfscan_FCH_dom	pirsf_Tyr_kinase_non-rcpt_Fes_subgr,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_FCH_dom,superfamily_Kinase-like_dom,superfamily_t-SNARE,smart_FCH_dom,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,pfscan_FCH_dom,pfscan_SH2,pfscan_Prot_kinase_dom	-	no_errors	FES	HGNC	ENSG00000182511				108	0	0	99	48	32.6531
ZC3H7A	0	genome.wustl.edu	37	16	11868230	11868230	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	11868230	11868230	C	T	SNP	ZC3H7A	ENST00000355758	human	ensembl	74_37	-1	known	silent	c.765	p.L255	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H7A	HGNC	ENSG00000122299				55	0	0	48	26	35.1351
UBE2I	0	genome.wustl.edu	37	16	1370217	1370217	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	1370217	1370217	C	T	SNP	UBE2I	ENST00000325437	human	ensembl	74_37	+1	known	missense	c.266	p.S89L	0.988	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2I	HGNC	ENSG00000103275				53	0	0	39	14	26.4151
GNPTG	0	genome.wustl.edu	37	16	1412640	1412640	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	1412640	1412640	T	G	SNP	GNPTG	ENST00000204679	human	ensembl	74_37	+1	known	missense	c.638	p.F213C	1.000	NULL	pfam_PRKCSH,superfamily_Man6P_isomerase_rcpt-bd_dom	-	no_errors	GNPTG	HGNC	ENSG00000090581				64	0	0	42	18	30
PARN	0	genome.wustl.edu	37	16	14540788	14540788	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	14540788	14540788	C	A	SNP	PARN	ENST00000437198	human	ensembl	74_37	-1	known	missense	c.1821	p.K607N	1.000	NULL	pfam_RNase_CAF1,pfam_PolyA-riboNase_RNA_binding,pfam_R3H_ss-bd,superfamily_RNaseH-like_dom,pfscan_R3H_ss-bd	-	no_errors	PARN	HGNC	ENSG00000140694				78	0	0	60	37	38.1443
IFT140	0	genome.wustl.edu	37	16	1574907	1574907	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	1574907	1574907	G	A	SNP	IFT140	ENST00000426508	human	ensembl	74_37	-1	known	missense	c.2875	p.R959W	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	IFT140	HGNC	ENSG00000187535				20	0	0	13	5	27.7778
NUBP2	0	genome.wustl.edu	37	16	1837726	1837726	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	1837726	1837726	A	G	SNP	NUBP2	ENST00000262302	human	ensembl	74_37	+1	known	missense	c.383	p.Y128C	0.892	pfam_ATPase-like_ParA/MinD,pfam_CobQ/CobB/MinD/ParA_Nub-bd_dom,pfam_ATPase_MipZ/NubP2/Cfd1,superfamily_P-loop_NTPase	pfam_ATPase-like_ParA/MinD,pfam_CobQ/CobB/MinD/ParA_Nub-bd_dom,pfam_ATPase_MipZ/NubP2/Cfd1,pfam_Anion-transp_ATPase-like_dom,pfam_ArgK,superfamily_P-loop_NTPase	-	no_errors	NUBP2	HGNC	ENSG00000095906				56	0	0	34	14	29.1667
PDILT	0	genome.wustl.edu	37	16	20373737	20373737	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	20373737	20373737	C	T	SNP	PDILT	ENST00000302451	human	ensembl	74_37	-1	known	missense	c.1405	p.G469S	0.003	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	PDILT	HGNC	ENSG00000169340				45	0	0	20	15	42.8571
IGSF6	0	genome.wustl.edu	37	16	21663892	21663892	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	21663892	21663892	C	T	SNP	IGSF6	ENST00000268389	human	ensembl	74_37	-1	known	missense	c.28	p.A10T	0.000	NULL	pfam_Ig_V-set,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	IGSF6	HGNC	ENSG00000140749				104	0	0	70	44	38.5965
LUC7L	0	genome.wustl.edu	37	16	239997	239997	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	239997	239997	C	T	SNP	LUC7L	ENST00000293872	human	ensembl	74_37	-1	known	missense	c.944	p.R315Q	1.000	NULL	pfam_Luc7-rel	-	no_errors	LUC7L	HGNC	ENSG00000007392				256	0	0	172	81	32.0158
TNRC6A	0	genome.wustl.edu	37	16	24817959	24817959	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	24817959	24817959	T	C	SNP	TNRC6A	ENST00000395799	human	ensembl	74_37	+1	known	missense	c.4394	p.L1465S	1.000	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6A	HGNC	ENSG00000090905				109	0	0	62	36	36.7347
GTF3C1	0	genome.wustl.edu	37	16	27475926	27475926	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	27475926	27475926	G	A	SNP	GTF3C1	ENST00000356183	human	ensembl	74_37	-1	known	missense	c.5587	p.R1863C	0.090	NULL	pfam_TFIIIC_Bblock-bd	-	no_errors	GTF3C1	HGNC	ENSG00000077235				38	0	0	36	11	23.4043
PRSS41	0	genome.wustl.edu	37	16	2854915	2854915	+	RNA	SNP	G	G	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	2854915	2854915	G	T	SNP	PRSS41	ENST00000399677	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PRSS41	HGNC	ENSG00000215148				18	0	0	8	5	38.4615
ATXN2L	0	genome.wustl.edu	37	16	28846629	28846629	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	28846629	28846629	C	G	SNP	ATXN2L	ENST00000395547	human	ensembl	74_37	+1	known	missense	c.2594	p.A865G	1.000	NULL	pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom	-	no_errors	ATXN2L	HGNC	ENSG00000168488				30	0	0	18	9	33.3333
SH2B1	0	genome.wustl.edu	37	16	28878130	28878130	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	28878130	28878130	G	A	SNP	SH2B1	ENST00000322610	human	ensembl	74_37	+1	known	missense	c.715	p.A239T	0.002	NULL	pfam_Phe_ZIP,pfam_Pleckstrin_homology,pfam_SH2,superfamily_Phe_ZIP,smart_Pleckstrin_homology,smart_SH2,pfscan_SH2,prints_SH2	-	no_errors	SH2B1	HGNC	ENSG00000178188				24	0	0	10	9	47.3684
RABEP2	0	genome.wustl.edu	37	16	28925566	28925566	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	28925566	28925566	C	T	SNP	RABEP2	ENST00000358201	human	ensembl	74_37	-1	known	silent	c.885	p.L295	0.983	pfam_Rabaptin_coiled-coil	pfam_Rabaptin_coiled-coil,pfam_Rabaptin_Rab5-bd_dom,prints_Rabaptin	-	no_errors	RABEP2	HGNC	ENSG00000177548				17	0	0	16	5	23.8095
NFATC2IP	0	genome.wustl.edu	37	16	28970351	28970351	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	28970351	28970351	C	T	SNP	NFATC2IP	ENST00000320805	human	ensembl	74_37	+1	known	missense	c.1031	p.T344M	0.000	NULL	pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	-	no_errors	NFATC2IP	HGNC	ENSG00000176953				40	0	0	38	6	13.6364
ITGAL	0	genome.wustl.edu	37	16	30507880	30507880	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	30507880	30507880	G	A	SNP	ITGAL	ENST00000356798	human	ensembl	74_37	+1	known	missense	c.1825	p.V609M	0.417	smart_Int_alpha_beta-p,prints_Integrin_alpha	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,prints_Integrin_alpha,pfscan_VWF_A	-	no_errors	ITGAL	HGNC	ENSG00000005844				48	0	0	31	19	38
SRCAP	0	genome.wustl.edu	37	16	30732518	30732518	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	30732518	30732518	T	C	SNP	SRCAP	ENST00000262518	human	ensembl	74_37	+1	known	missense	c.3262	p.S1088P	0.992	NULL	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603				73	0	0	47	33	41.25
SRCAP	0	genome.wustl.edu	37	16	30744953	30744953	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	30744953	30744953	C	T	SNP	SRCAP	ENST00000262518	human	ensembl	74_37	+1	known	missense	c.6328	p.R2110C	1.000	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603				74	0	0	51	25	32.8947
ZNF646	0	genome.wustl.edu	37	16	31088883	31088883	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	31088883	31088883	C	T	SNP	ZNF646	ENST00000300850	human	ensembl	74_37	+1	known	missense	c.1238	p.A413V	0.832	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF646	HGNC	ENSG00000167395				24	0	0	19	8	29.6296
ITGAX	0	genome.wustl.edu	37	16	31391664	31391664	+	Silent	SNP	C	C	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	31391664	31391664	C	A	SNP	ITGAX	ENST00000268296	human	ensembl	74_37	+1	known	silent	c.3138	p.T1046	0.713	NULL	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGAX	HGNC	ENSG00000140678				22	0	0	27	12	30.7692
DNASE1	0	genome.wustl.edu	37	16	3706167	3706167	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	3706167	3706167	C	T	SNP	DNASE1	ENST00000246949	human	ensembl	74_37	+1	known	missense	c.301	p.R101C	1.000	pirsf_DNase_I,pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_DNase_I	pirsf_DNase_I,pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_DNase_I,prints_DNase_I	-	no_errors	DNASE1	HGNC	ENSG00000213918				53	0	0	35	15	30
GLIS2	0	genome.wustl.edu	37	16	4384878	4384878	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	4384878	4384878	C	G	SNP	GLIS2	ENST00000262366	human	ensembl	74_37	+1	known	missense	c.422	p.A141G	0.854	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLIS2	HGNC	ENSG00000126603				36	0	0	27	18	40
CORO7-PAM16	0	genome.wustl.edu	37	16	4409582	4409582	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	4409582	4409582	G	T	SNP	CORO7-PAM16	ENST00000572467	human	ensembl	74_37	-1	known	missense	c.2149	p.L717M	0.996	NULL	pfam_DUF1900,pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO7-PAM16	HGNC	ENSG00000103426				21	0	0	13	9	40.9091
ORC6	0	genome.wustl.edu	37	16	46731427	46731427	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	46731427	46731427	A	G	SNP	ORC6	ENST00000219097	human	ensembl	74_37	+1	known	missense	c.689	p.Q230R	0.961	NULL	pfam_ORC6	-	no_errors	ORC6	HGNC	ENSG00000091651				59	0	0	63	15	19.2308
ABCC12	0	genome.wustl.edu	37	16	48119514	48119514	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	48119514	48119514	C	T	SNP	ABCC12	ENST00000311303	human	ensembl	74_37	-1	known	missense	c.3818	p.R1273H	1.000	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC12	HGNC	ENSG00000140798				89	0	0	74	32	30.1887
CBLN1	0	genome.wustl.edu	37	16	49315194	49315194	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	49315194	49315194	C	A	SNP	CBLN1	ENST00000219197	human	ensembl	74_37	-1	known	missense	c.183	p.K61N	1.000	superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	CBLN1	HGNC	ENSG00000102924				60	0	0	19	8	29.6296
PPL	0	genome.wustl.edu	37	16	4933690	4933690	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	4933690	4933690	G	A	SNP	PPL	ENST00000345988	human	ensembl	74_37	-1	known	missense	c.4966	p.R1656C	1.000	smart_Plectin_repeat	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	PPL	HGNC	ENSG00000118898				31	0	0	14	10	41.6667
PAPD5	0	genome.wustl.edu	37	16	50263299	50263299	+	RNA	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	50263299	50263299	G	A	SNP	PAPD5	ENST00000573002	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.879	-	-	-	no_errors	PAPD5	HGNC	ENSG00000121274				22	0	0	19	9	32.1429
CYLD	0	genome.wustl.edu	37	16	50815288	50815288	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	50815288	50815288	G	A	SNP	CYLD	ENST00000311559	human	ensembl	74_37	+1	known	silent	c.1650	p.P550	0.028	superfamily_CAP-Gly_domain	pfam_CAP-Gly_domain,pfam_Peptidase_C19/C67,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain,pfscan_Peptidase_C19/C67	-	no_errors	CYLD	HGNC	ENSG00000083799				59	0	0	37	17	31.4815
RPGRIP1L	0	genome.wustl.edu	37	16	53682940	53682940	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	53682940	53682940	C	T	SNP	RPGRIP1L	ENST00000379925	human	ensembl	74_37	-1	known	missense	c.2240	p.R747Q	1.000	NULL	pfam_DUF3250,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	RPGRIP1L	HGNC	ENSG00000103494				78	0	0	60	38	38.7755
IRX3	0	genome.wustl.edu	37	16	54318212	54318212	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	54318212	54318212	G	A	SNP	IRX3	ENST00000329734	human	ensembl	74_37	-1	known	missense	c.1397	p.A466V	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom	-	no_errors	IRX3	HGNC	ENSG00000177508				35	0	0	30	8	21.0526
NLRC5	0	genome.wustl.edu	37	16	57060522	57060522	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	57060522	57060522	G	A	SNP	NLRC5	ENST00000262510	human	ensembl	74_37	+1	known	missense	c.1667	p.G556D	0.001	NULL	pfam_Leu-rich_rpt,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_NACHT_NTPase	-	no_errors	NLRC5	HGNC	ENSG00000140853				74	0	0	56	25	30.8642
CPNE2	0	genome.wustl.edu	37	16	57181521	57181521	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	57181521	57181521	A	G	SNP	CPNE2	ENST00000290776	human	ensembl	74_37	+1	known	missense	c.1598	p.Q533R	1.000	NULL	pfam_Copine,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,smart_VWF_A,pfscan_C2_dom	-	no_errors	CPNE2	HGNC	ENSG00000140848				54	0	0	70	5	6.66667
PRSS54	0	genome.wustl.edu	37	16	58324964	58324964	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	58324964	58324964	C	T	SNP	PRSS54	ENST00000219301	human	ensembl	74_37	-1	known	silent	c.162	p.P54	0.926	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	-	no_errors	PRSS54	HGNC	ENSG00000103023				57	0	0	47	7	12.963
CNOT1	0	genome.wustl.edu	37	16	58581500	58581500	+	Silent	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	58581500	58581500	T	C	SNP	CNOT1	ENST00000317147	human	ensembl	74_37	-1	known	silent	c.3609	p.T1203	0.994	NULL	pfam_CCR4-Not_Not1_C,superfamily_ARM-type_fold	-	no_errors	CNOT1	HGNC	ENSG00000125107				42	0	0	49	16	24.6154
CNOT1	0	genome.wustl.edu	37	16	58581512	58581512	+	Silent	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	58581512	58581512	T	C	SNP	CNOT1	ENST00000317147	human	ensembl	74_37	-1	known	silent	c.3597	p.L1199	0.999	NULL	pfam_CCR4-Not_Not1_C,superfamily_ARM-type_fold	-	no_errors	CNOT1	HGNC	ENSG00000125107				37	0	0	51	13	20.3125
CDH5	0	genome.wustl.edu	37	16	66436800	66436800	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	66436800	66436800	G	A	SNP	CDH5	ENST00000341529	human	ensembl	74_37	+1	known	missense	c.2083	p.A695T	0.000	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH5	HGNC	ENSG00000179776				12	0	0	5	5	50
DYNC1LI2	0	genome.wustl.edu	37	16	66776564	66776564	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	66776564	66776564	C	T	SNP	DYNC1LI2	ENST00000258198	human	ensembl	74_37	-1	known	silent	c.306	p.T102	0.079	pfam_Dynein_light_int_chain,superfamily_P-loop_NTPase	pfam_Dynein_light_int_chain,superfamily_P-loop_NTPase	-	no_errors	DYNC1LI2	HGNC	ENSG00000135720				26	0	0	34	3	8.10811
NAE1	0	genome.wustl.edu	37	16	66847501	66847501	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	66847501	66847501	C	T	SNP	NAE1	ENST00000290810	human	ensembl	74_37	-1	known	missense	c.1000	p.A334T	1.000	superfamily_Molybdenum_cofac_synth_MoeB	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB	-	no_errors	NAE1	HGNC	ENSG00000159593				42	0	0	33	14	29.7872
FHOD1	0	genome.wustl.edu	37	16	67268086	67268086	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	67268086	67268086	G	A	SNP	FHOD1	ENST00000258201	human	ensembl	74_37	-1	known	missense	c.1520	p.A507V	0.467	NULL	pfam_FH2_Formin,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FHOD1	HGNC	ENSG00000135723				57	0	0	35	12	25.5319
CDH1	0	genome.wustl.edu	37	16	68835713	68835713	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	68835713	68835713	G	A	SNP	CDH1	ENST00000261769	human	ensembl	74_37	+1	known	missense	c.304	p.A102T	0.768	pfam_Cadherin_pro_dom,superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068				77	0	0	54	24	30.7692
ZFHX3	0	genome.wustl.edu	37	16	72830135	72830135	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	72830135	72830135	C	T	SNP	ZFHX3	ENST00000268489	human	ensembl	74_37	-1	known	missense	c.6446	p.R2149H	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836				59	0	0	38	17	30.9091
ZFHX3	0	genome.wustl.edu	37	16	72984509	72984509	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	72984509	72984509	G	A	SNP	ZFHX3	ENST00000268489	human	ensembl	74_37	-1	known	silent	c.3075	p.N1025	0.731	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836				57	0	0	27	15	35.7143
ZFHX3	0	genome.wustl.edu	37	16	72993351	72993351	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	72993351	72993351	G	A	SNP	ZFHX3	ENST00000268489	human	ensembl	74_37	-1	known	missense	c.694	p.R232C	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836				111	0	0	92	50	35.2113
CHST5	0	genome.wustl.edu	37	16	75563418	75563418	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	75563418	75563418	G	A	SNP	CHST5	ENST00000541075	human	ensembl	74_37	-1	known	missense	c.883	p.R295C	1.000	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST5	HGNC	ENSG00000135702				42	0	0	32	10	23.8095
KARS	0	genome.wustl.edu	37	16	75669691	75669691	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	75669691	75669691	G	A	SNP	KARS	ENST00000319410	human	ensembl	74_37	-1	known	missense	c.766	p.R256C	1.000	pfam_aa-tRNA-synt_II,tigrfam_Lys-tRNA-ligase_II	pfam_aa-tRNA-synt_II,pfam_NA-bd_OB_tRNA,superfamily_NA-bd_OB-fold,pfscan_aa-tRNA-synth_II,prints_Lys-tRNA-synth_II_C,prints_Asp/Asn-tRNA-synth_IIb,tigrfam_Lys-tRNA-ligase_II	-	no_errors	KARS	HGNC	ENSG00000065427				81	0	0	53	31	36.9048
ADAMTS18	0	genome.wustl.edu	37	16	77369762	77369762	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	77369762	77369762	C	T	SNP	ADAMTS18	ENST00000282849	human	ensembl	74_37	-1	known	missense	c.1750	p.G584R	1.000	NULL	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS18	HGNC	ENSG00000140873				143	0	0	59	45	43.2692
OSGIN1	0	genome.wustl.edu	37	16	83994222	83994222	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	83994222	83994222	G	A	SNP	OSGIN1	ENST00000361711	human	ensembl	74_37	+1	known	missense	c.253	p.V85M	1.000	NULL	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD	-	no_errors	OSGIN1	HGNC	ENSG00000140961				47	0	0	35	18	33.9623
MBTPS1	0	genome.wustl.edu	37	16	84088130	84088130	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	84088130	84088130	G	A	SNP	MBTPS1	ENST00000343411	human	ensembl	74_37	-1	known	missense	c.3083	p.P1028L	1.000	NULL	pfam_Peptidase_S8/S53_dom,superfamily_Peptidase_S8/S53_dom,prints_Peptidase_S8_subtilisin-rel	-	no_errors	MBTPS1	HGNC	ENSG00000140943				19	0	0	27	11	28.9474
MBTPS1	0	genome.wustl.edu	37	16	84100196	84100196	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	84100196	84100196	C	T	SNP	MBTPS1	ENST00000343411	human	ensembl	74_37	-1	known	missense	c.2251	p.G751R	1.000	NULL	pfam_Peptidase_S8/S53_dom,superfamily_Peptidase_S8/S53_dom,prints_Peptidase_S8_subtilisin-rel	-	no_errors	MBTPS1	HGNC	ENSG00000140943				44	0	0	38	14	26.9231
FOXF1	0	genome.wustl.edu	37	16	86544392	86544392	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	86544392	86544392	G	A	SNP	FOXF1	ENST00000262426	human	ensembl	74_37	+1	known	missense	c.217	p.E73K	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXF1	HGNC	ENSG00000103241				60	0	0	37	32	46.3768
ANKRD11	0	genome.wustl.edu	37	16	89351372	89351372	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	89351372	89351372	G	A	SNP	ANKRD11	ENST00000301030	human	ensembl	74_37	-1	known	silent	c.1578	p.H526	0.559	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD11	HGNC	ENSG00000167522				33	0	0	34	13	27.6596
MYH8	0	genome.wustl.edu	37	17	10303844	10303844	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	10303844	10303844	C	T	SNP	MYH8	ENST00000403437	human	ensembl	74_37	-1	known	missense	c.3598	p.A1200T	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH8	HGNC	ENSG00000133020				80	0	0	68	31	31.3131
DNAH9	0	genome.wustl.edu	37	17	11713626	11713626	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	11713626	11713626	A	G	SNP	DNAH9	ENST00000262442	human	ensembl	74_37	+1	known	missense	c.8647	p.T2883A	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174				73	0	0	53	24	31.1688
TVP23C	0	genome.wustl.edu	37	17	15441469	15441469	+	Splice_Site	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	15441469	15441469	C	T	SNP	TVP23C	ENST00000523573	human	ensembl	74_37	-1	known	splice_site	c.162-2	e5-2	0.998	-	-	-	no_errors	TVP23C	HGNC	ENSG00000175106				67	0	0	93	34	26.7717
LLGL1	0	genome.wustl.edu	37	17	18140896	18140896	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	18140896	18140896	C	T	SNP	LLGL1	ENST00000316843	human	ensembl	74_37	+1	known	silent	c.1713	p.H571	0.877	superfamily_WD40_repeat_dom,prints_Lethal2_giant	pfam_LLGL2,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,prints_Lethal2_giant	-	no_errors	LLGL1	HGNC	ENSG00000131899				27	0	0	28	12	30
LLGL1	0	genome.wustl.edu	37	17	18140961	18140961	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	18140961	18140961	T	C	SNP	LLGL1	ENST00000316843	human	ensembl	74_37	+1	known	missense	c.1778	p.V593A	1.000	superfamily_WD40_repeat_dom	pfam_LLGL2,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,prints_Lethal2_giant	-	no_errors	LLGL1	HGNC	ENSG00000131899				13	0	0	16	7	30.4348
EVPLL	0	genome.wustl.edu	37	17	18286145	18286145	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	18286145	18286145	C	T	SNP	EVPLL	ENST00000399134	human	ensembl	74_37	+1	novel	missense	c.478	p.R160C	0.097	NULL	NULL	-	no_errors	EVPLL	HGNC	ENSG00000214860				15	0	0	8	9	52.9412
KCNJ12	0	genome.wustl.edu	37	17	21318995	21318995	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	21318995	21318995	C	T	SNP	KCNJ12	ENST00000331718	human	ensembl	74_37	+1	known	missense	c.341	p.P114L	1.000	pfam_K_chnl_inward-rec_Kir,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir2.2	pfam_K_chnl_inward-rec_Kir,pfam_K_chnl_inward-rec_Kir_N,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir2.2	-	no_errors	KCNJ12	HGNC	ENSG00000184185				35	0	0	44	6	12
ENSG00000266830	0	genome.wustl.edu	37	17	26574873	26574873	+	RNA	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	26574873	26574873	C	T	SNP	ENSG00000266830	ENST00000579045	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	CTD-2008P7.8	Clone_based_vega_gene	ENSG00000266830				9	0	0	1	3	75
ALDOC	0	genome.wustl.edu	37	17	26902512	26902512	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	26902512	26902512	C	T	SNP	ALDOC	ENST00000226253	human	ensembl	74_37	-1	known	silent	c.39	p.K13	1.000	NULL	pfam_Aldolase_I	-	no_errors	ALDOC	HGNC	ENSG00000109107				43	0	0	44	24	35.2941
KIAA0100	0	genome.wustl.edu	37	17	26958520	26958520	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	26958520	26958520	G	A	SNP	KIAA0100	ENST00000528896	human	ensembl	74_37	-1	known	missense	c.4276	p.H1426Y	1.000	NULL	pfam_FMP27_C,pfam_FMP27_N,pfam_FMP27_GFWDK_dom	-	no_errors	KIAA0100	HGNC	ENSG00000007202				27	0	0	31	11	26.1905
ENSG00000214719	0	genome.wustl.edu	37	17	28958830	28958830	+	RNA	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	28958830	28958830	G	A	SNP	ENSG00000214719	ENST00000398849	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.819	-	-	-	no_errors	AC005562.1	Clone_based_vega_gene	ENSG00000214719				168	0	0	124	64	34.0426
NF1	0	genome.wustl.edu	37	17	29556992	29556992	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	29556992	29556992	G	T	SNP	NF1	ENST00000358273	human	ensembl	74_37	+1	known	missense	c.2990	p.R997M	1.000	superfamily_ARM-type_fold	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	-	no_errors	NF1	HGNC	ENSG00000196712				121	0	0	92	31	25.2033
TMEM132E	0	genome.wustl.edu	37	17	32956140	32956140	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	32956140	32956140	G	T	SNP	TMEM132E	ENST00000321639	human	ensembl	74_37	+1	known	missense	c.985	p.G329C	0.045	NULL	NULL	-	no_errors	TMEM132E	HGNC	ENSG00000181291				58	0	0	39	19	32.7586
SLFN5	0	genome.wustl.edu	37	17	33586176	33586176	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	33586176	33586176	A	C	SNP	SLFN5	ENST00000299977	human	ensembl	74_37	+1	known	missense	c.467	p.Q156P	0.002	NULL	pfam_ATPase_AAA-4,pfam_DUF2075,superfamily_P-loop_NTPase	-	no_errors	SLFN5	HGNC	ENSG00000166750				107	0	0	86	37	30.0813
CCL15	0	genome.wustl.edu	37	17	34324855	34324855	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	34324855	34324855	C	A	SNP	CCL15	ENST00000354059	human	ensembl	74_37	-1	known	missense	c.290	p.S97I	0.000	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	-	no_errors	CCL15	HGNC	ENSG00000267596				38	0	0	28	12	30
SYNRG	0	genome.wustl.edu	37	17	35902366	35902366	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	35902366	35902366	C	T	SNP	SYNRG	ENST00000339208	human	ensembl	74_37	-1	known	silent	c.2910	p.T970	0.000	NULL	smart_EPS15_homology,pfscan_EPS15_homology	-	no_errors	SYNRG	HGNC	ENSG00000006114				92	0	0	54	23	29.8701
LOC101929950	0	genome.wustl.edu	37	17	36359005	36359005	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	36359005	36359005	T	C	SNP	LOC101929950	ENST00000312412	human	ensembl	74_37	-1	known	missense	c.686	p.N229S	1.000	pfam_Peptidase_M1_N	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	RP11-1407O15.2	Clone_based_vega_gene	ENSG00000174093				160	0	0	158	20	11.236
C17orf98	0	genome.wustl.edu	37	17	36997563	36997563	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	36997563	36997563	C	T	SNP	C17orf98	ENST00000398575	human	ensembl	74_37	-1	known	missense	c.80	p.R27H	0.152	NULL	NULL	-	no_errors	C17orf98	HGNC	ENSG00000214556				29	0	0	20	12	37.5
CAMKK1	0	genome.wustl.edu	37	17	3786397	3786397	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	3786397	3786397	A	G	SNP	CAMKK1	ENST00000381771	human	ensembl	74_37	-1	known	missense	c.587	p.V196A	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CAMKK1	HGNC	ENSG00000004660				43	0	0	25	14	35.8974
NR1D1	0	genome.wustl.edu	37	17	38253490	38253490	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	38253490	38253490	G	A	SNP	NR1D1	ENST00000246672	human	ensembl	74_37	-1	known	silent	c.198	p.R66	0.999	NULL	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR1D1	HGNC	ENSG00000126368				36	0	0	28	4	12.5
KRT27	0	genome.wustl.edu	37	17	38936090	38936090	+	Silent	SNP	C	C	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	38936090	38936090	C	A	SNP	KRT27	ENST00000301656	human	ensembl	74_37	-1	known	silent	c.708	p.A236	0.001	pfam_IF,superfamily_Prefoldin	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT27	HGNC	ENSG00000171446				55	0	0	29	12	29.2683
KRT12	0	genome.wustl.edu	37	17	39021080	39021080	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	39021080	39021080	T	C	SNP	KRT12	ENST00000251643	human	ensembl	74_37	-1	known	missense	c.785	p.Y262C	1.000	pfam_IF,superfamily_Prefoldin	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT12	HGNC	ENSG00000187242				105	0	0	79	36	31.3043
ZZEF1	0	genome.wustl.edu	37	17	3926101	3926101	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	3926101	3926101	G	A	SNP	ZZEF1	ENST00000381638	human	ensembl	74_37	-1	known	missense	c.7114	p.R2372C	1.000	NULL	pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_CUB_dom,smart_EF_hand_dom,smart_Znf_ZZ,pfscan_EF_hand_dom,pfscan_Znf_ZZ	-	no_errors	ZZEF1	HGNC	ENSG00000074755				60	0	0	46	20	30.303
JUP	0	genome.wustl.edu	37	17	39776936	39776936	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	39776936	39776936	G	A	SNP	JUP	ENST00000540235	human	ensembl	74_37	-1	known	missense	c.1633	p.R545C	1.000	pfam_IF	pfam_IF,pfam_Armadillo,superfamily_ARM-type_fold,superfamily_Prefoldin,smart_Armadillo,pfscan_Armadillo,prints_Keratin_I,prints_Beta-catenin	-	no_errors	JUP	HGNC	ENSG00000173801				44	0	0	37	19	33.9286
NAGLU	0	genome.wustl.edu	37	17	40695811	40695811	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	40695811	40695811	G	A	SNP	NAGLU	ENST00000225927	human	ensembl	74_37	+1	known	missense	c.1787	p.G596D	0.994	pfam_NAGLU_tim-barrel	pfam_NAGLU_tim-barrel,superfamily_Glycoside_hydrolase_SF	-	no_errors	NAGLU	HGNC	ENSG00000108784				11	0	0	13	4	23.5294
PSMC3IP	0	genome.wustl.edu	37	17	40725006	40725006	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	40725006	40725006	C	T	SNP	PSMC3IP	ENST00000393795	human	ensembl	74_37	-1	known	missense	c.634	p.V212I	0.962	NULL	pfam_TBPIP,pfam_BlaI_family	-	no_errors	PSMC3IP	HGNC	ENSG00000131470				69	0	0	50	29	36.7089
AOC3	0	genome.wustl.edu	37	17	41003976	41003976	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	41003976	41003976	C	T	SNP	AOC3	ENST00000308423	human	ensembl	74_37	+1	known	missense	c.616	p.R206W	0.000	pfam_Cu_amine_oxidase_N3,superfamily_Cu_amine_oxidase_N-reg	pfam_Cu_amine_oxidase_C,pfam_Cu_amine_oxidase_N2,pfam_Cu_amine_oxidase_N3,superfamily_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_N-reg,prints_Cu_amine_oxidase	-	no_errors	AOC3	HGNC	ENSG00000131471				32	0	0	18	11	37.931
MPP2	0	genome.wustl.edu	37	17	41959879	41959879	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	41959879	41959879	C	A	SNP	MPP2	ENST00000461854	human	ensembl	74_37	-1	known	missense	c.526	p.G176C	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_GK/Ca_channel_bsu,pfam_L27_C,pfam_SH3_2,pfam_PDZ,pfam_SH3_domain,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	MPP2	HGNC	ENSG00000108852				29	0	0	22	13	37.1429
MPP2	0	genome.wustl.edu	37	17	41975706	41975706	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	41975706	41975706	G	A	SNP	MPP2	ENST00000461854	human	ensembl	74_37	-1	known	missense	c.74	p.A25V	1.000	pfam_L27_C,smart_L27	pfam_GK/Ca_channel_bsu,pfam_L27_C,pfam_SH3_2,pfam_PDZ,pfam_SH3_domain,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	MPP2	HGNC	ENSG00000108852				30	0	0	30	22	42.3077
GPATCH8	0	genome.wustl.edu	37	17	42475277	42475277	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	42475277	42475277	C	T	SNP	GPATCH8	ENST00000591680	human	ensembl	74_37	-1	known	missense	c.4168	p.A1390T	0.996	NULL	pfam_G_patch_dom,pfam_Znf_C2H2_jaz,smart_G_patch_dom,pfscan_Znf_C2H2,pfscan_G_patch_dom	-	no_errors	GPATCH8	HGNC	ENSG00000186566				34	0	0	16	12	42.8571
MYBBP1A	0	genome.wustl.edu	37	17	4448573	4448573	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	4448573	4448573	C	T	SNP	MYBBP1A	ENST00000381556	human	ensembl	74_37	-1	known	missense	c.2141	p.R714Q	0.000	pfam_DNA_pol_V,superfamily_ARM-type_fold	pfam_DNA_pol_V,superfamily_ARM-type_fold	-	no_errors	MYBBP1A	HGNC	ENSG00000132382				51	0	0	40	20	33.3333
NFE2L1	0	genome.wustl.edu	37	17	46136768	46136768	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	46136768	46136768	G	A	SNP	NFE2L1	ENST00000362042	human	ensembl	74_37	+1	known	missense	c.2084	p.R695Q	0.058	pfam_bZIP,smart_bZIP,pfscan_bZIP	pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L1	HGNC	ENSG00000082641				41	0	0	39	25	39.0625
HOXB13	0	genome.wustl.edu	37	17	46805700	46805700	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	46805700	46805700	C	T	SNP	HOXB13	ENST00000290295	human	ensembl	74_37	-1	known	missense	c.256	p.G86R	1.000	pfam_HoxA13_N	pfam_HoxA13_N,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	HOXB13	HGNC	ENSG00000159184				56	0	0	29	15	34.0909
NGFR	0	genome.wustl.edu	37	17	47583941	47583941	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	47583941	47583941	G	A	SNP	NGFR	ENST00000172229	human	ensembl	74_37	+1	known	silent	c.489	p.P163	1.000	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_16	pfam_TNFR/NGFR_Cys_rich_reg,pfam_Death_domain,superfamily_DEATH-like_dom,smart_TNFR/NGFR_Cys_rich_reg,smart_Death_domain,pfscan_Death_domain,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_16	-	no_errors	NGFR	HGNC	ENSG00000064300				8	0	0	8	11	57.8947
KAT7	0	genome.wustl.edu	37	17	47869286	47869286	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	47869286	47869286	C	T	SNP	KAT7	ENST00000259021	human	ensembl	74_37	+1	known	silent	c.54	p.S18	1.000	NULL	pfam_MOZ_SAS,pfam_Znf_C2HC,superfamily_Acyl_CoA_acyltransferase	-	no_errors	KAT7	HGNC	ENSG00000136504				121	0	0	97	50	34.0136
ITGA3	0	genome.wustl.edu	37	17	48166496	48166496	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	48166496	48166496	G	A	SNP	ITGA3	ENST00000007722	human	ensembl	74_37	+1	novel	missense	c.3068	p.R1023H	0.029	NULL	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA3	HGNC	ENSG00000005884				354	0	0	266	141	34.6437
CACNA1G	0	genome.wustl.edu	37	17	48668860	48668860	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	48668860	48668860	C	T	SNP	CACNA1G	ENST00000359106	human	ensembl	74_37	+1	known	missense	c.2518	p.R840C	0.998	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1G	HGNC	ENSG00000006283				16	0	0	15	6	28.5714
USP6	0	genome.wustl.edu	37	17	5041042	5041042	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	5041042	5041042	C	T	SNP	USP6	ENST00000250066	human	ensembl	74_37	+1	known	nonsense	c.922	p.Q308*	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom	pfam_Peptidase_C19/C67,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom,pfscan_Peptidase_C19/C67	-	no_errors	USP6	HGNC	ENSG00000129204				122	0	0	74	32	30.1887
GDPD1	0	genome.wustl.edu	37	17	57351092	57351092	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	57351092	57351092	T	A	SNP	GDPD1	ENST00000284116	human	ensembl	74_37	+1	known	nonsense	c.903	p.Y301*	1.000	pfam_GlyceroP-diester-Pdiesterase,superfamily_PLC-like_Pdiesterase_TIM-brl	pfam_GlyceroP-diester-Pdiesterase,superfamily_PLC-like_Pdiesterase_TIM-brl	-	no_errors	GDPD1	HGNC	ENSG00000153982				36	0	0	36	15	29.4118
TACO1	0	genome.wustl.edu	37	17	61685281	61685281	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	61685281	61685281	C	T	SNP	TACO1	ENST00000258975	human	ensembl	74_37	+1	known	silent	c.813	p.P271	0.000	pfam_Transcrip_reg_TACO1-like	pfam_Transcrip_reg_TACO1-like	-	no_errors	TACO1	HGNC	ENSG00000136463				65	0	0	52	18	25.7143
FTSJ3	0	genome.wustl.edu	37	17	61897300	61897300	+	Silent	SNP	T	T	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	61897300	61897300	T	A	SNP	FTSJ3	ENST00000427159	human	ensembl	74_37	-1	known	silent	c.2406	p.V802	1.000	pfam_rRNA_MeTfrase_Spb1_C	pfam_rRNA_MeTfrase_Spb1_C,pfam_rRNA_MeTrfase_FtsJ_dom,pfam_rRNA_MeTfrase_Spb1_DUF3381	-	no_errors	FTSJ3	HGNC	ENSG00000108592				96	0	0	58	27	31.7647
CEP95	0	genome.wustl.edu	37	17	62527046	62527046	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	62527046	62527046	G	A	SNP	CEP95	ENST00000556440	human	ensembl	74_37	+1	known	silent	c.1449	p.A483	0.043	NULL	superfamily_CH-domain	-	no_errors	CEP95	HGNC	ENSG00000258890				9	0	0	4	5	55.5556
CACNG4	0	genome.wustl.edu	37	17	65027085	65027085	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	65027085	65027085	G	A	SNP	CACNG4	ENST00000262138	human	ensembl	74_37	+1	known	missense	c.949	p.V317I	0.705	NULL	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_g4su,prints_VDCC_gsu,prints_Claudin	-	no_errors	CACNG4	HGNC	ENSG00000075461				60	0	0	37	26	41.2698
ARSG	0	genome.wustl.edu	37	17	66391298	66391298	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	66391298	66391298	C	T	SNP	ARSG	ENST00000448504	human	ensembl	74_37	+1	known	silent	c.1176	p.S392	0.000	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSG	HGNC	ENSG00000141337				56	0	0	59	7	10.6061
CLEC10A	0	genome.wustl.edu	37	17	6978516	6978516	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	6978516	6978516	C	T	SNP	CLEC10A	ENST00000254868	human	ensembl	74_37	-1	known	missense	c.808	p.D270N	0.156	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_Lectin_N,pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_AntifreezeII,pfscan_C-type_lectin	-	no_errors	CLEC10A	HGNC	ENSG00000132514				33	0	0	24	15	38.4615
DLG4	0	genome.wustl.edu	37	17	7106649	7106649	+	Splice_Site	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	7106649	7106649	C	T	SNP	DLG4	ENST00000399510	human	ensembl	74_37	-1	known	splice_site	c.635-1	e9-1	1.000	-	-	-	no_errors	DLG4	HGNC	ENSG00000132535				28	0	0	23	17	42.5
CD300E	0	genome.wustl.edu	37	17	72613483	72613483	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	72613483	72613483	G	A	SNP	CD300E	ENST00000426295	human	ensembl	74_37	-1	known	silent	c.285	p.Y95	0.000	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	CD300E	HGNC	ENSG00000186407				60	0	0	59	27	31.3953
TMEM104	0	genome.wustl.edu	37	17	72832455	72832455	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	72832455	72832455	G	A	SNP	TMEM104	ENST00000335464	human	ensembl	74_37	+1	known	missense	c.1120	p.V374M	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	TMEM104	HGNC	ENSG00000109066				146	0	0	101	64	38.7879
GGA3	0	genome.wustl.edu	37	17	73239539	73239539	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	73239539	73239539	A	G	SNP	GGA3	ENST00000245541	human	ensembl	74_37	-1	known	missense	c.413	p.L138P	1.000	pfam_VHS,superfamily_ENTH_VHS,smart_VHS_subgr,pfscan_VHS	pfam_VHS,pfam_GAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_Coatomer/clathrin_app_Ig-like,superfamily_ENTH_VHS,smart_VHS_subgr,smart_Clathrin_a/b/g-adaptin_app_Ig,pfscan_Clathrin_g-adaptin_app,pfscan_GAT,pfscan_VHS	-	no_errors	GGA3	HGNC	ENSG00000125447				84	0	0	74	35	32.1101
SLC35G6	0	genome.wustl.edu	37	17	7386241	7386241	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	7386241	7386241	C	T	SNP	SLC35G6	ENST00000412468	human	ensembl	74_37	+1	known	missense	c.938	p.A313V	0.992	pfam_DMT	pfam_DMT	-	no_errors	SLC35G6	HGNC	ENSG00000259224				116	0	0	110	7	5.98291
EVPL	0	genome.wustl.edu	37	17	74005351	74005351	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	74005351	74005351	G	A	SNP	EVPL	ENST00000301607	human	ensembl	74_37	-1	known	missense	c.3935	p.T1312M	0.991	NULL	pfam_Plectin_repeat,superfamily_Ferritin-like_SF,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	EVPL	HGNC	ENSG00000167880				125	0	0	97	42	30.2158
EVPL	0	genome.wustl.edu	37	17	74005498	74005498	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	74005498	74005498	C	T	SNP	EVPL	ENST00000301607	human	ensembl	74_37	-1	known	missense	c.3788	p.S1263N	1.000	NULL	pfam_Plectin_repeat,superfamily_Ferritin-like_SF,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	EVPL	HGNC	ENSG00000167880				76	0	0	48	24	33.3333
TP53	0	genome.wustl.edu	37	17	7577121	7577121	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	7577121	7577121	G	A	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.817	p.R273C	0.830	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				31	0	0	17	3	15
CCDC40	0	genome.wustl.edu	37	17	78023975	78023975	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	78023975	78023975	G	A	SNP	CCDC40	ENST00000397545	human	ensembl	74_37	+1	known	missense	c.1052	p.R351H	0.258	NULL	pfam_E3_ubiquit_lig_BRE1	-	no_errors	CCDC40	HGNC	ENSG00000141519				11	0	0	12	9	42.8571
CHD3	0	genome.wustl.edu	37	17	7810789	7810789	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	7810789	7810789	G	T	SNP	CHD3	ENST00000330494	human	ensembl	74_37	+1	known	missense	c.4907	p.G1636V	0.724	NULL	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD3	HGNC	ENSG00000170004				21	0	0	26	5	16.129
RNF213	0	genome.wustl.edu	37	17	78313974	78313974	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	78313974	78313974	A	G	SNP	RNF213	ENST00000582970	human	ensembl	74_37	+1	known	missense	c.5807	p.H1936R	1.000	NULL	superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821				29	0	0	22	7	24.1379
BAIAP2	0	genome.wustl.edu	37	17	79077502	79077502	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	79077502	79077502	C	T	SNP	BAIAP2	ENST00000321300	human	ensembl	74_37	+1	known	silent	c.843	p.P281	0.007	NULL	pfam_IRSp53/MIM_homology_IMD,pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	BAIAP2	HGNC	ENSG00000175866				20	0	0	14	7	33.3333
ALOX12B	0	genome.wustl.edu	37	17	7978911	7978911	+	Splice_Site	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	7978911	7978911	A	G	SNP	ALOX12B	ENST00000319144	human	ensembl	74_37	-1	known	splice_site	c.1654+2	e12+2	1.000	-	-	-	no_errors	ALOX12B	HGNC	ENSG00000179477				83	0	0	86	39	31.2
GPS1	0	genome.wustl.edu	37	17	80012391	80012391	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	80012391	80012391	T	C	SNP	GPS1	ENST00000355130	human	ensembl	74_37	+1	known	missense	c.434	p.L145P	1.000	NULL	pfam_26S_proteasome_reg_su-Rpn7,pfam_PCI_dom,smart_PCI_dom	-	no_errors	GPS1	HGNC	ENSG00000169727				13	0	0	6	2	25
FOXK2	0	genome.wustl.edu	37	17	80521332	80521332	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	80521332	80521332	C	T	SNP	FOXK2	ENST00000335255	human	ensembl	74_37	+1	known	silent	c.522	p.A174	0.169	NULL	pfam_TF_fork_head,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,smart_TF_fork_head,pfscan_FHA_dom,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXK2	HGNC	ENSG00000141568				72	0	0	49	15	23.4375
FN3K	0	genome.wustl.edu	37	17	80708606	80708606	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	80708606	80708606	G	A	SNP	FN3K	ENST00000300784	human	ensembl	74_37	+1	known	missense	c.905	p.G302D	0.985	pfam_Fructo-/Ketosamine-3-kinase,pirsf_Fructo-/Ketosamine-3-kinase	pfam_Fructo-/Ketosamine-3-kinase,pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom,pirsf_Fructo-/Ketosamine-3-kinase	-	no_errors	FN3K	HGNC	ENSG00000167363				73	0	0	35	28	44.4444
TMEM107	0	genome.wustl.edu	37	17	8077915	8077915	+	Silent	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	8077915	8077915	A	G	SNP	TMEM107	ENST00000316425	human	ensembl	74_37	-1	known	silent	c.294	p.S98	1.000	NULL	NULL	-	no_errors	TMEM107	HGNC	ENSG00000179029				260	0	0	183	102	35.7895
MYH10	0	genome.wustl.edu	37	17	8393780	8393780	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	8393780	8393780	C	T	SNP	MYH10	ENST00000396239	human	ensembl	74_37	-1	known	missense	c.4732	p.A1578T	1.000	pfam_Myosin_tail,superfamily_Prefoldin	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_HR1_rho-bd,superfamily_UBA-like,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH10	HGNC	ENSG00000133026				121	0	0	89	35	28.2258
WDR16	0	genome.wustl.edu	37	17	9515631	9515631	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	9515631	9515631	T	A	SNP	WDR16	ENST00000299764	human	ensembl	74_37	+1	known	missense	c.890	p.I297N	0.985	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR16	HGNC	ENSG00000166596				82	0	0	53	27	33.75
NAPG	0	genome.wustl.edu	37	18	10532792	10532792	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	18	10532792	10532792	C	T	SNP	NAPG	ENST00000322897	human	ensembl	74_37	+1	known	missense	c.209	p.A70V	1.000	NULL	NULL	-	no_errors	NAPG	HGNC	ENSG00000134265				9	0	0	7	5	41.6667
GREB1L	0	genome.wustl.edu	37	18	19024325	19024325	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	18	19024325	19024325	G	A	SNP	GREB1L	ENST00000424526	human	ensembl	74_37	+1	known	missense	c.1348	p.V450M	0.999	NULL	superfamily_P-loop_NTPase	-	no_errors	GREB1L	HGNC	ENSG00000141449				24	0	0	18	5	21.7391
SNRPD1	0	genome.wustl.edu	37	18	19203788	19203788	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	18	19203788	19203788	G	A	SNP	SNRPD1	ENST00000300413	human	ensembl	74_37	+1	known	silent	c.171	p.T57	0.979	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc	-	no_errors	SNRPD1	HGNC	ENSG00000167088				77	0	0	52	31	37.3494
ASXL3	0	genome.wustl.edu	37	18	31323629	31323629	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	18	31323629	31323629	A	G	SNP	ASXL3	ENST00000269197	human	ensembl	74_37	+1	known	missense	c.3817	p.T1273A	0.996	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL3	HGNC	ENSG00000141431				65	0	0	54	18	25
ASXL3	0	genome.wustl.edu	37	18	31325578	31325578	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	18	31325578	31325578	C	T	SNP	ASXL3	ENST00000269197	human	ensembl	74_37	+1	known	silent	c.5766	p.D1922	0.004	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL3	HGNC	ENSG00000141431				70	0	0	72	47	39.4958
DLGAP1	0	genome.wustl.edu	37	18	3879216	3879216	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	18	3879216	3879216	C	T	SNP	DLGAP1	ENST00000315677	human	ensembl	74_37	-1	known	missense	c.853	p.V285M	1.000	NULL	pfam_GKAP	-	no_errors	DLGAP1	HGNC	ENSG00000170579				52	0	0	34	23	40.3509
EPG5	0	genome.wustl.edu	37	18	43446902	43446902	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	18	43446902	43446902	T	C	SNP	EPG5	ENST00000282041	human	ensembl	74_37	-1	known	missense	c.6482	p.Y2161C	1.000	NULL	NULL	-	no_errors	EPG5	HGNC	ENSG00000152223				87	0	0	69	35	33.6538
ST8SIA5	0	genome.wustl.edu	37	18	44336460	44336460	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	18	44336460	44336460	C	T	SNP	ST8SIA5	ENST00000315087	human	ensembl	74_37	-1	known	silent	c.12	p.A4	0.936	pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST8SIA5	HGNC	ENSG00000101638				32	0	0	29	7	19.4444
ME2	0	genome.wustl.edu	37	18	48473717	48473717	+	RNA	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	18	48473717	48473717	G	A	SNP	ME2	ENST00000585680	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ME2	HGNC	ENSG00000082212				12	0	0	3	2	40
POLI	0	genome.wustl.edu	37	18	51820306	51820306	+	Silent	SNP	C	C	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	18	51820306	51820306	C	A	SNP	POLI	ENST00000579534	human	ensembl	74_37	+1	known	silent	c.1692	p.A564	0.724	NULL	pfam_DNA_repair_prot_UmuC-like,pfam_DNA_pol_Y-fam_little_finger,superfamily_DNA_pol_Y-fam_little_finger,pfscan_DNA_repair_prot_UmuC-like_N	-	no_errors	POLI	HGNC	ENSG00000101751				37	0	0	29	20	40.8163
WDR7	0	genome.wustl.edu	37	18	54339760	54339760	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	18	54339760	54339760	G	T	SNP	WDR7	ENST00000254442	human	ensembl	74_37	+1	known	missense	c.14	p.S5I	1.000	smart_WD40_repeat	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR7	HGNC	ENSG00000091157				56	0	0	36	27	42.8571
WDR7	0	genome.wustl.edu	37	18	54358513	54358513	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	18	54358513	54358513	G	T	SNP	WDR7	ENST00000254442	human	ensembl	74_37	+1	known	missense	c.784	p.G262W	1.000	superfamily_Quinonprotein_ADH-like_supfam	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR7	HGNC	ENSG00000091157				76	0	0	69	31	31
WDR7	0	genome.wustl.edu	37	18	54424292	54424292	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	18	54424292	54424292	G	A	SNP	WDR7	ENST00000254442	human	ensembl	74_37	+1	known	missense	c.2468	p.R823H	1.000	NULL	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR7	HGNC	ENSG00000091157				139	1	0.714286	162	22	11.9565
WDR7	0	genome.wustl.edu	37	18	54424475	54424475	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	18	54424475	54424475	G	A	SNP	WDR7	ENST00000254442	human	ensembl	74_37	+1	known	missense	c.2651	p.R884H	1.000	NULL	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR7	HGNC	ENSG00000091157				82	0	0	65	9	12.1622
CDH20	0	genome.wustl.edu	37	18	59221656	59221656	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	18	59221656	59221656	G	A	SNP	CDH20	ENST00000262717	human	ensembl	74_37	+1	known	missense	c.2134	p.V712M	1.000	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH20	HGNC	ENSG00000101542				26	0	0	21	7	25
RNF152	0	genome.wustl.edu	37	18	59483442	59483442	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	18	59483442	59483442	G	A	SNP	RNF152	ENST00000312828	human	ensembl	74_37	-1	known	silent	c.255	p.S85	0.140	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF152	HGNC	ENSG00000176641				41	0	0	29	17	36.9565
PHLPP1	0	genome.wustl.edu	37	18	60645690	60645690	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	18	60645690	60645690	G	A	SNP	PHLPP1	ENST00000262719	human	ensembl	74_37	+1	known	missense	c.4180	p.D1394N	0.998	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	pfam_PP2C-like_dom,pfam_Leu-rich_rpt,superfamily_PP2C-like_dom,smart_Leu-rich_rpt_typical-subtyp,smart_PP2C-like_dom,pfscan_Pleckstrin_homology	-	no_errors	PHLPP1	HGNC	ENSG00000081913				11	0	0	9	7	43.75
TSHZ1	0	genome.wustl.edu	37	18	72999537	72999537	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	18	72999537	72999537	C	T	SNP	TSHZ1	ENST00000580243	human	ensembl	74_37	+1	known	silent	c.2175	p.N725	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ1	HGNC	ENSG00000179981				66	0	0	51	22	30.137
ZNF516	0	genome.wustl.edu	37	18	74091754	74091754	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	18	74091754	74091754	G	A	SNP	ZNF516	ENST00000443185	human	ensembl	74_37	-1	known	silent	c.2316	p.P772	0.999	smart_Znf_C2H2-like	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF516	HGNC	ENSG00000101493				13	0	0	11	12	52.1739
TXNDC2	0	genome.wustl.edu	37	18	9887885	9887885	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	18	9887885	9887885	T	C	SNP	TXNDC2	ENST00000306084	human	ensembl	74_37	+1	known	missense	c.1409	p.L470P	0.892	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,pfam_Glutenin,superfamily_Thioredoxin-like_fold	-	no_errors	TXNDC2	HGNC	ENSG00000168454				51	0	0	28	19	40.4255
TMEM259	0	genome.wustl.edu	37	19	1010455	1010455	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	1010455	1010455	G	A	SNP	TMEM259	ENST00000356663	human	ensembl	74_37	-1	known	missense	c.1757	p.P586L	0.003	NULL	pfam_Membralin	-	no_errors	TMEM259	HGNC	ENSG00000182087				8	0	0	4	4	50
COL5A3	0	genome.wustl.edu	37	19	10114729	10114729	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	10114729	10114729	C	T	SNP	COL5A3	ENST00000264828	human	ensembl	74_37	-1	known	silent	c.687	p.P229	0.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A3	HGNC	ENSG00000080573				53	0	0	40	25	38.4615
TMED1	0	genome.wustl.edu	37	19	10943787	10943787	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	10943787	10943787	A	C	SNP	TMED1	ENST00000214869	human	ensembl	74_37	-1	known	missense	c.568	p.L190V	1.000	pfam_GOLD	pfam_GOLD,superfamily_GOLD,pfscan_GOLD	-	no_errors	TMED1	HGNC	ENSG00000099203				48	0	0	36	18	33.3333
ZNF440	0	genome.wustl.edu	37	19	11942182	11942182	+	Splice_Site	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	11942182	11942182	G	A	SNP	ZNF440	ENST00000304060	human	ensembl	74_37	+1	known	splice_site	c.192-1	e4-1	0.002	-	-	-	no_errors	ZNF440	HGNC	ENSG00000171295				77	0	0	66	28	29.7872
ZNF709	0	genome.wustl.edu	37	19	12574828	12574828	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	12574828	12574828	T	A	SNP	ZNF709	ENST00000397732	human	ensembl	74_37	-1	known	missense	c.1908	p.R636S	0.001	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_Znf_C2H2_jaz,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF709	HGNC	ENSG00000242852				122	0	0	96	51	34.6939
MAST1	0	genome.wustl.edu	37	19	12963047	12963047	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	12963047	12963047	G	A	SNP	MAST1	ENST00000251472	human	ensembl	74_37	+1	known	missense	c.995	p.R332H	0.996	pfam_MA_Ser/Thr_Kinase_dom	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_dom	-	no_errors	MAST1	HGNC	ENSG00000105613				53	0	0	43	18	29.5082
NFIX	0	genome.wustl.edu	37	19	13192651	13192651	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	13192651	13192651	G	A	SNP	NFIX	ENST00000585575	human	ensembl	74_37	+1	known	silent	c.1212	p.S404	0.257	pfam_CTF/NFI	pfam_CTF/NFI,pfam_CTF/NFI_DNA-bd_N,pfam_MAD_homology1_Dwarfin-type,smart_MAD_homology1_Dwarfin-type,pfscan_CTF/NFI_DNA-bd-dom	-	no_errors	NFIX	HGNC	ENSG00000008441				29	0	0	17	10	37.037
TRMT1	0	genome.wustl.edu	37	19	13223783	13223783	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	13223783	13223783	G	A	SNP	TRMT1	ENST00000357720	human	ensembl	74_37	-1	known	silent	c.684	p.D228	0.832	pfam_TRM1,pfam_tRNA_Trfase_Trm5/Tyw2,tigrfam_TRM1	pfam_TRM1,pfam_Znf_CCCH,pfam_tRNA_Trfase_Trm5/Tyw2,smart_Znf_CCCH,tigrfam_TRM1	-	no_errors	TRMT1	HGNC	ENSG00000104907				33	0	0	43	5	10.4167
DAZAP1	0	genome.wustl.edu	37	19	1428885	1428885	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	1428885	1428885	G	A	SNP	DAZAP1	ENST00000233078	human	ensembl	74_37	+1	known	silent	c.591	p.A197	0.758	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	DAZAP1	HGNC	ENSG00000071626				28	0	0	23	10	30.303
OR1I1	0	genome.wustl.edu	37	19	15198125	15198125	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	15198125	15198125	G	A	SNP	OR1I1	ENST00000209540	human	ensembl	74_37	+1	known	silent	c.249	p.A83	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1I1	HGNC	ENSG00000094661				45	0	0	40	20	33.3333
CYP4F12	0	genome.wustl.edu	37	19	15806782	15806782	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	15806782	15806782	C	T	SNP	CYP4F12	ENST00000324632	human	ensembl	74_37	+1	known	silent	c.1152	p.C384	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F12	HGNC	ENSG00000186204				92	0	0	57	36	38.7097
EPS15L1	0	genome.wustl.edu	37	19	16535966	16535966	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	16535966	16535966	C	T	SNP	EPS15L1	ENST00000455140	human	ensembl	74_37	-1	known	silent	c.720	p.P240	0.008	NULL	superfamily_Prefoldin,smart_EPS15_homology,smart_EF_hand_dom,smart_Ubiquitin-int_motif,pfscan_EF_hand_dom,pfscan_EPS15_homology,pfscan_Ubiquitin-int_motif	-	no_errors	EPS15L1	HGNC	ENSG00000127527				30	0	0	21	12	36.3636
NWD1	0	genome.wustl.edu	37	19	16918583	16918583	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	16918583	16918583	G	A	SNP	NWD1	ENST00000379808	human	ensembl	74_37	+1	known	missense	c.3923	p.S1308N	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NWD1	HGNC	ENSG00000188039				76	0	0	43	16	27.1186
FCHO1	0	genome.wustl.edu	37	19	17893892	17893892	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	17893892	17893892	C	T	SNP	FCHO1	ENST00000252771	human	ensembl	74_37	+1	known	silent	c.2004	p.S668	0.939	pfam_Muniscin_C-term_mu_dom	pfam_Muniscin_C-term_mu_dom,pfam_FCH_dom,superfamily_Clathrin_mu_C,smart_FCH_dom,pfscan_FCH_dom	-	no_errors	FCHO1	HGNC	ENSG00000130475				50	0	0	54	6	10
LSM4	0	genome.wustl.edu	37	19	18420588	18420588	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	18420588	18420588	G	A	SNP	LSM4	ENST00000593829	human	ensembl	74_37	-1	known	silent	c.228	p.I76	0.955	superfamily_LSM_dom	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc	-	no_errors	LSM4	HGNC	ENSG00000130520				30	0	0	23	5	17.8571
TMEM161A	0	genome.wustl.edu	37	19	19240983	19240983	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	19240983	19240983	C	T	SNP	TMEM161A	ENST00000162044	human	ensembl	74_37	-1	known	missense	c.577	p.E193K	1.000	pfam_Transmembrane_161A/B	pfam_Transmembrane_161A/B	-	no_errors	TMEM161A	HGNC	ENSG00000064545				27	0	0	33	5	13.1579
SUGP1	0	genome.wustl.edu	37	19	19391027	19391027	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	19391027	19391027	G	A	SNP	SUGP1	ENST00000247001	human	ensembl	74_37	-1	known	silent	c.1317	p.D439	0.719	NULL	pfam_Surp,pfam_G_patch_dom,superfamily_Surp,smart_Surp,smart_G_patch_dom,pfscan_Surp,pfscan_G_patch_dom	-	no_errors	SUGP1	HGNC	ENSG00000105705				67	0	0	52	31	37.3494
MOB3A	0	genome.wustl.edu	37	19	2076887	2076887	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	2076887	2076887	C	T	SNP	MOB3A	ENST00000357066	human	ensembl	74_37	-1	known	missense	c.547	p.V183M	1.000	pfam_Mob1_phocein,superfamily_Mob1_phocein	pfam_Mob1_phocein,superfamily_Mob1_phocein	-	no_errors	MOB3A	HGNC	ENSG00000172081				48	0	0	44	21	32.3077
ZNF208	0	genome.wustl.edu	37	19	22154680	22154680	+	Silent	SNP	A	A	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	22154680	22154680	A	C	SNP	ZNF208	ENST00000397126	human	ensembl	74_37	-1	novel	silent	c.3156	p.A1052	0.954	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF208	HGNC	ENSG00000160321				120	0	0	110	52	32.0988
ZNF676	0	genome.wustl.edu	37	19	22363176	22363176	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	22363176	22363176	G	C	SNP	ZNF676	ENST00000397121	human	ensembl	74_37	-1	known	missense	c.1343	p.P448R	0.967	pfscan_Znf_C2H2	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF676	HGNC	ENSG00000196109				113	0	0	91	29	24.1667
TSHZ3	0	genome.wustl.edu	37	19	31769550	31769550	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	31769550	31769550	C	T	SNP	TSHZ3	ENST00000240587	human	ensembl	74_37	-1	known	silent	c.1149	p.S383	0.087	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ3	HGNC	ENSG00000121297				122	0	0	78	33	29.7297
RHPN2	0	genome.wustl.edu	37	19	33482843	33482843	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	33482843	33482843	C	T	SNP	RHPN2	ENST00000254260	human	ensembl	74_37	-1	known	silent	c.1530	p.R510	1.000	pfam_BRO1_dom,superfamily_PDZ	pfam_BRO1_dom,pfam_HR1_rho-bd,superfamily_HR1_rho-bd,superfamily_PDZ,smart_HR1_rho-bd,smart_PDZ,pfscan_BRO1_dom	-	no_errors	RHPN2	HGNC	ENSG00000131941				73	0	0	68	9	11.6883
GPI	0	genome.wustl.edu	37	19	34890536	34890536	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	34890536	34890536	G	A	SNP	GPI	ENST00000415930	human	ensembl	74_37	+1	known	missense	c.1507	p.A503T	1.000	pfam_G6P_Isomerase,prints_G6P_Isomerase	pfam_G6P_Isomerase,prints_G6P_Isomerase	-	no_errors	GPI	HGNC	ENSG00000105220				105	0	0	88	36	29.0323
GRAMD1A	0	genome.wustl.edu	37	19	35514240	35514240	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	35514240	35514240	G	A	SNP	GRAMD1A	ENST00000317991	human	ensembl	74_37	+1	known	missense	c.1954	p.A652T	1.000	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD1A	HGNC	ENSG00000089351				214	1	0.465116	174	70	28.6885
USF2	0	genome.wustl.edu	37	19	35761384	35761384	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	35761384	35761384	G	A	SNP	USF2	ENST00000222305	human	ensembl	74_37	+1	known	missense	c.464	p.S155N	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	USF2	HGNC	ENSG00000105698				53	0	0	46	3	6.12245
USF2	0	genome.wustl.edu	37	19	35761690	35761690	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	35761690	35761690	G	A	SNP	USF2	ENST00000222305	human	ensembl	74_37	+1	known	missense	c.650	p.R217Q	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	USF2	HGNC	ENSG00000105698				80	0	0	75	19	20.2128
CD22	0	genome.wustl.edu	37	19	35828791	35828791	+	Silent	SNP	C	C	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	35828791	35828791	C	A	SNP	CD22	ENST00000085219	human	ensembl	74_37	+1	known	silent	c.852	p.T284	0.000	pfam_Immunoglobulin,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Immunoglobulin,pfam_Ig_I-set,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	CD22	HGNC	ENSG00000012124				51	0	0	36	13	26.5306
CACTIN	0	genome.wustl.edu	37	19	3612132	3612132	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	3612132	3612132	C	T	SNP	CACTIN	ENST00000221899	human	ensembl	74_37	-1	known	missense	c.1862	p.R621H	1.000	pfam_Cactin_C	pfam_Cactin_dom,pfam_Cactin_C	-	no_errors	CACTIN	HGNC	ENSG00000105298				128	0	0	84	49	36.8421
KMT2B	0	genome.wustl.edu	37	19	36223276	36223276	+	Silent	SNP	C	C	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	36223276	36223276	C	A	SNP	KMT2B	ENST00000222270	human	ensembl	74_37	+1	known	silent	c.5826	p.P1942	1.000	pirsf_MeTrfase_trithorax	pirsf_MeTrfase_trithorax,pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KMT2B	Uniprot_gn	ENSG00000272333				17	0	0	10	8	44.4444
NFKBID	0	genome.wustl.edu	37	19	36387021	36387021	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	36387021	36387021	G	A	SNP	NFKBID	ENST00000352614	human	ensembl	74_37	-1	known	missense	c.923	p.P308L	0.997	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	NFKBID	HGNC	ENSG00000167604				63	0	0	31	12	27.907
PIP5K1C	0	genome.wustl.edu	37	19	3641788	3641788	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	3641788	3641788	C	T	SNP	PIP5K1C	ENST00000537021	human	ensembl	74_37	-1	known	missense	c.1702	p.A568T	0.063	NULL	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP5K1C	HGNC	ENSG00000186111				30	0	0	20	14	41.1765
CLIP3	0	genome.wustl.edu	37	19	36508783	36508783	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	36508783	36508783	C	T	SNP	CLIP3	ENST00000360535	human	ensembl	74_37	-1	known	missense	c.1294	p.V432M	0.930	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain	pfam_CAP-Gly_domain,pfam_Ankyrin_rpt,superfamily_CAP-Gly_domain,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_CAP-Gly_domain	-	no_errors	CLIP3	HGNC	ENSG00000105270				93	0	0	54	30	35.7143
PIP5K1C	0	genome.wustl.edu	37	19	3653507	3653507	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	3653507	3653507	G	A	SNP	PIP5K1C	ENST00000537021	human	ensembl	74_37	-1	known	silent	c.702	p.R234	0.956	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP5K1C	HGNC	ENSG00000186111				45	0	0	36	19	34.5455
TJP3	0	genome.wustl.edu	37	19	3736172	3736172	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	3736172	3736172	C	T	SNP	TJP3	ENST00000262968	human	ensembl	74_37	+1	known	silent	c.1236	p.P412	0.003	superfamily_PDZ	pfam_PDZ,pfam_SH3_2,pfam_GK/Ca_channel_bsu,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like,prints_ZonOcculS3,prints_ZonOcculdens	-	no_errors	TJP3	HGNC	ENSG00000105289				46	0	0	42	15	26.3158
ZNF568	0	genome.wustl.edu	37	19	37441545	37441545	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	37441545	37441545	C	T	SNP	ZNF568	ENST00000333987	human	ensembl	74_37	+1	known	missense	c.1490	p.T497M	0.997	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF568	HGNC	ENSG00000198453				92	0	0	56	32	36.3636
ZNF527	0	genome.wustl.edu	37	19	37879380	37879380	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	37879380	37879380	G	A	SNP	ZNF527	ENST00000436120	human	ensembl	74_37	+1	known	silent	c.429	p.A143	0.177	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF527	HGNC	ENSG00000189164				83	0	0	60	16	21.0526
ZFR2	0	genome.wustl.edu	37	19	3831668	3831668	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	3831668	3831668	G	A	SNP	ZFR2	ENST00000262961	human	ensembl	74_37	-1	known	silent	c.588	p.T196	0.000	NULL	pfam_DZF,smart_Znf_U1,smart_Znf_C2H2-like,smart_DZF	-	no_errors	ZFR2	HGNC	ENSG00000105278				11	0	0	7	6	46.1538
YIF1B	0	genome.wustl.edu	37	19	38798088	38798088	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	38798088	38798088	C	T	SNP	YIF1B	ENST00000339413	human	ensembl	74_37	-1	known	missense	c.769	p.V257I	0.009	pfam_Hrf1,pfam_Yip1	pfam_Hrf1,pfam_Yip1	-	no_errors	YIF1B	HGNC	ENSG00000167645				21	0	0	33	16	32.6531
PSMD8	0	genome.wustl.edu	37	19	38873894	38873894	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	38873894	38873894	G	A	SNP	PSMD8	ENST00000215071	human	ensembl	74_37	+1	known	missense	c.917	p.R306Q	1.000	NULL	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	-	no_errors	PSMD8	HGNC	ENSG00000099341				29	0	0	20	8	28.5714
RYR1	0	genome.wustl.edu	37	19	39068584	39068584	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	39068584	39068584	C	T	SNP	RYR1	ENST00000359596	human	ensembl	74_37	+1	known	silent	c.14199	p.Y4733	0.902	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218				67	0	0	41	27	39.7059
PSMC4	0	genome.wustl.edu	37	19	40485741	40485741	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	40485741	40485741	G	A	SNP	PSMC4	ENST00000157812	human	ensembl	74_37	+1	known	missense	c.691	p.V231M	1.000	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-2,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-2,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	-	no_errors	PSMC4	HGNC	ENSG00000013275				97	0	0	62	28	31.1111
AKT2	0	genome.wustl.edu	37	19	40747883	40747883	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	40747883	40747883	C	T	SNP	AKT2	ENST00000392038	human	ensembl	74_37	-1	known	missense	c.535	p.A179T	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom	-	no_errors	AKT2	HGNC	ENSG00000105221				49	0	0	49	17	25.7576
C19orf47	0	genome.wustl.edu	37	19	40834366	40834366	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	40834366	40834366	C	T	SNP	C19orf47	ENST00000582783	human	ensembl	74_37	-1	known	silent	c.504	p.S168	0.000	NULL	superfamily_SAM/pointed	-	no_errors	C19orf47	HGNC	ENSG00000160392				157	0	0	140	23	14.1104
SHKBP1	0	genome.wustl.edu	37	19	41083184	41083184	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	41083184	41083184	T	C	SNP	SHKBP1	ENST00000291842	human	ensembl	74_37	+1	known	missense	c.134	p.F45S	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_T1-type_BTB,pfam_WD40_repeat,superfamily_BTB/POZ_fold,superfamily_WD40_repeat_dom,smart_BTB/POZ-like,smart_WD40_repeat,pfscan_BTB/POZ-like	-	no_errors	SHKBP1	HGNC	ENSG00000160410				62	0	0	60	4	6.25
LTBP4	0	genome.wustl.edu	37	19	41135394	41135394	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	41135394	41135394	G	A	SNP	LTBP4	ENST00000308370	human	ensembl	74_37	+1	known	missense	c.4811	p.R1604H	0.113	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	LTBP4	HGNC	ENSG00000090006				21	0	0	7	7	50
CYP2S1	0	genome.wustl.edu	37	19	41709424	41709424	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	41709424	41709424	G	A	SNP	CYP2S1	ENST00000310054	human	ensembl	74_37	+1	known	missense	c.1046	p.R349H	0.579	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-I_CYP2A-like,prints_Cyt_P450_E_grp-I_CYP2B-like,prints_Cyt_P450_B	-	no_errors	CYP2S1	HGNC	ENSG00000167600				13	0	0	5	5	50
CCDC97	0	genome.wustl.edu	37	19	41822537	41822537	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	41822537	41822537	C	T	SNP	CCDC97	ENST00000269967	human	ensembl	74_37	+1	known	silent	c.295	p.L99	1.000	NULL	pfam_DUF2052_coiled-coil	-	no_errors	CCDC97	HGNC	ENSG00000142039				40	0	0	20	15	42.8571
ERF	0	genome.wustl.edu	37	19	42752741	42752741	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	42752741	42752741	C	A	SNP	ERF	ENST00000222329	human	ensembl	74_37	-1	known	missense	c.1523	p.G508V	0.715	NULL	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ERF	HGNC	ENSG00000105722				30	0	0	20	12	37.5
PSG5	0	genome.wustl.edu	37	19	43680089	43680089	+	Silent	SNP	G	G	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	43680089	43680089	G	T	SNP	PSG5	ENST00000342951	human	ensembl	74_37	-1	known	silent	c.642	p.P214	0.992	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PSG5	HGNC	ENSG00000204941				188	1	0.529101	125	76	37.8109
XRCC1	0	genome.wustl.edu	37	19	44048331	44048331	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	44048331	44048331	C	T	SNP	XRCC1	ENST00000262887	human	ensembl	74_37	-1	known	silent	c.1677	p.R559	0.712	pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	pfam_Xrcc1_N,pfam_BRCT_dom,superfamily_Galactose-bd-like,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	XRCC1	HGNC	ENSG00000073050				21	0	0	17	8	32
CADM4	0	genome.wustl.edu	37	19	44131398	44131398	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	44131398	44131398	C	T	SNP	CADM4	ENST00000222374	human	ensembl	74_37	-1	known	missense	c.284	p.R95H	1.000	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_I-set,pfam_Ig_V-set,pfam_CD80_C2-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like_dom	-	no_errors	CADM4	HGNC	ENSG00000105767				54	0	0	33	25	43.1034
IRGC	0	genome.wustl.edu	37	19	44223276	44223276	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	44223276	44223276	C	T	SNP	IRGC	ENST00000244314	human	ensembl	74_37	+1	known	missense	c.566	p.A189V	0.000	pfam_Interferon-induced_GTPase,superfamily_P-loop_NTPase	pfam_Interferon-induced_GTPase,superfamily_P-loop_NTPase	-	no_errors	IRGC	HGNC	ENSG00000124449				33	0	0	13	6	31.5789
ZNF226	0	genome.wustl.edu	37	19	44676240	44676240	+	Splice_Site	SNP	G	G	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	44676240	44676240	G	T	SNP	ZNF226	ENST00000337433	human	ensembl	74_37	+1	known	splice_site	c.16-1	e2-1	1.000	-	-	-	no_errors	ZNF226	HGNC	ENSG00000167380				122	0	0	86	40	31.746
PLIN4	0	genome.wustl.edu	37	19	4512339	4512339	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	4512339	4512339	C	T	SNP	PLIN4	ENST00000301286	human	ensembl	74_37	-1	novel	missense	c.1591	p.V531M	0.011	NULL	pfam_Perilipin,superfamily_Ankyrin_rpt-contain_dom	-	no_errors	PLIN4	HGNC	ENSG00000167676				104	0	0	78	44	36.0656
CLPTM1	0	genome.wustl.edu	37	19	45490450	45490450	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	45490450	45490450	C	T	SNP	CLPTM1	ENST00000337392	human	ensembl	74_37	+1	known	silent	c.807	p.D269	0.983	pfam_CLPTM1	pfam_CLPTM1	-	no_errors	CLPTM1	HGNC	ENSG00000104853				109	0	0	84	33	28.2051
SEMA6B	0	genome.wustl.edu	37	19	4550844	4550844	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	4550844	4550844	G	A	SNP	SEMA6B	ENST00000301293	human	ensembl	74_37	-1	known	missense	c.1088	p.T363M	0.999	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,pfscan_Semap_dom	-	no_errors	SEMA6B	HGNC	ENSG00000167680				58	0	0	31	22	41.5094
SEMA6B	0	genome.wustl.edu	37	19	4554436	4554436	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	4554436	4554436	G	T	SNP	SEMA6B	ENST00000301293	human	ensembl	74_37	-1	known	missense	c.735	p.F245L	1.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,pfscan_Semap_dom	-	no_errors	SEMA6B	HGNC	ENSG00000167680				60	0	0	43	19	30.6452
ERCC2	0	genome.wustl.edu	37	19	45855905	45855905	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	45855905	45855905	C	T	SNP	ERCC2	ENST00000391945	human	ensembl	74_37	-1	known	silent	c.1905	p.A635	0.000	superfamily_P-loop_NTPase,smart_ATP-dep_Helicase_C,tigrfam_DNA_helicase_DNA-repair_Rad3	pfam_DUF1227,pfam_DEAD_2,superfamily_P-loop_NTPase,smart_Helicase-like_DEXD_c2,smart_ATP-dep_Helicase_C,prints_XPGD_DNA_repair,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	-	no_errors	ERCC2	HGNC	ENSG00000104884				47	0	0	28	20	41.6667
FOXA3	0	genome.wustl.edu	37	19	46376101	46376101	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	46376101	46376101	A	G	SNP	FOXA3	ENST00000302177	human	ensembl	74_37	+1	known	missense	c.838	p.T280A	0.055	NULL	pfam_TF_fork_head,pfam_Fork-head_N,pfam_Forkhead_box_C,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXA3	HGNC	ENSG00000170608				33	0	0	23	11	32.3529
IGFL4	0	genome.wustl.edu	37	19	46543646	46543646	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	46543646	46543646	C	T	SNP	IGFL4	ENST00000377697	human	ensembl	74_37	-1	known	silent	c.99	p.A33	0.000	NULL	NULL	-	no_errors	IGFL4	HGNC	ENSG00000204869				66	0	0	48	14	22.5806
PNMAL1	0	genome.wustl.edu	37	19	46973945	46973945	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	46973945	46973945	G	A	SNP	PNMAL1	ENST00000313683	human	ensembl	74_37	-1	known	silent	c.348	p.A116	0.002	NULL	NULL	-	no_errors	PNMAL1	HGNC	ENSG00000182013				57	0	0	48	17	26.1538
ARHGAP35	0	genome.wustl.edu	37	19	47422067	47422067	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	47422067	47422067	G	A	SNP	ARHGAP35	ENST00000404338	human	ensembl	74_37	+1	known	silent	c.135	p.P45	0.024	superfamily_P-loop_NTPase	pfam_RhoGAP_dom,pfam_Small_GTPase,pfam_FF_domain,superfamily_Rho_GTPase_activation_prot,superfamily_P-loop_NTPase,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP35	HGNC	ENSG00000160007				102	0	0	64	23	26.4368
SLC8A2	0	genome.wustl.edu	37	19	47951332	47951332	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	47951332	47951332	G	A	SNP	SLC8A2	ENST00000236877	human	ensembl	74_37	-1	known	silent	c.1497	p.G499	0.992	tigrfam_Na_Ca_Ex	pfam_Calx_beta,pfam_NaCa_Exmemb,smart_Calx_beta,prints_Na_Ca_Ex,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A2	HGNC	ENSG00000118160				8	0	0	7	4	36.3636
TICAM1	0	genome.wustl.edu	37	19	4817760	4817760	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	4817760	4817760	G	A	SNP	TICAM1	ENST00000248244	human	ensembl	74_37	-1	known	silent	c.630	p.S210	1.000	pirsf_TICAM1	superfamily_TIR_dom,pirsf_TICAM1	-	no_errors	TICAM1	HGNC	ENSG00000127666				38	0	0	23	19	45.2381
PLIN3	0	genome.wustl.edu	37	19	4859941	4859941	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	4859941	4859941	C	T	SNP	PLIN3	ENST00000221957	human	ensembl	74_37	-1	known	silent	c.162	p.P54	0.493	pfam_Perilipin,pirsf_Perilipin	pfam_Perilipin,pirsf_Perilipin	-	no_errors	PLIN3	HGNC	ENSG00000105355				23	0	0	21	5	19.2308
PLEKHA4	0	genome.wustl.edu	37	19	49362226	49362226	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	49362226	49362226	C	T	SNP	PLEKHA4	ENST00000263265	human	ensembl	74_37	-1	known	missense	c.863	p.R288H	0.999	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA4	HGNC	ENSG00000105559				43	0	0	24	15	38.4615
PLEKHA4	0	genome.wustl.edu	37	19	49368837	49368837	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	49368837	49368837	C	T	SNP	PLEKHA4	ENST00000263265	human	ensembl	74_37	-1	known	missense	c.115	p.A39T	0.926	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA4	HGNC	ENSG00000105559				50	0	0	30	12	28.5714
RUVBL2	0	genome.wustl.edu	37	19	49510397	49510397	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	49510397	49510397	C	T	SNP	RUVBL2	ENST00000595090	human	ensembl	74_37	+1	known	missense	c.388	p.R130C	0.949	pfam_TIP49_C,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_TIP49_C,pfam_ATPase_AAA_core,pfam_DNA_helicase_DnaB-like_C,superfamily_P-loop_NTPase,superfamily_NA-bd_OB-fold,smart_AAA+_ATPase,prints_DNA_repair_RadA	-	no_errors	RUVBL2	HGNC	ENSG00000183207				39	0	0	28	14	33.3333
UHRF1	0	genome.wustl.edu	37	19	4954817	4954817	+	RNA	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	4954817	4954817	C	T	SNP	UHRF1	ENST00000262952	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	UHRF1	HGNC	ENSG00000034063				33	0	0	27	15	35.7143
KCNA7	0	genome.wustl.edu	37	19	49573446	49573446	+	Silent	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	49573446	49573446	A	G	SNP	KCNA7	ENST00000221444	human	ensembl	74_37	-1	known	silent	c.1245	p.H415	0.940	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv1	-	no_errors	KCNA7	HGNC	ENSG00000104848				51	0	0	28	12	30
HRC	0	genome.wustl.edu	37	19	49657748	49657748	+	Silent	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	49657748	49657748	A	G	SNP	HRC	ENST00000252825	human	ensembl	74_37	-1	known	silent	c.747	p.D249	0.849	pfam_Hist_rich_Ca-bd	pfam_Hist_rich_Ca-bd	-	no_errors	HRC	HGNC	ENSG00000130528				29	0	0	36	4	10
PRMT1	0	genome.wustl.edu	37	19	50189896	50189896	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	50189896	50189896	G	A	SNP	PRMT1	ENST00000454376	human	ensembl	74_37	+1	known	silent	c.945	p.T315	0.237	pfam_Arg_MeTrfase	pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_Arg_MeTrfase,pfam_Methyltransf_11,pfam_Small_mtfrase_dom,pfam_tRNA_Trfase_Trm5/Tyw2	-	no_errors	PRMT1	HGNC	ENSG00000126457				37	0	0	25	13	34.2105
ZNF473	0	genome.wustl.edu	37	19	50542512	50542512	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	50542512	50542512	C	T	SNP	ZNF473	ENST00000270617	human	ensembl	74_37	+1	known	missense	c.104	p.A35V	0.001	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF473	HGNC	ENSG00000142528				76	0	0	72	18	20
ZNF473	0	genome.wustl.edu	37	19	50545072	50545072	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	50545072	50545072	C	T	SNP	ZNF473	ENST00000270617	human	ensembl	74_37	+1	known	silent	c.222	p.S74	0.002	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF473	HGNC	ENSG00000142528				41	0	0	37	13	26
LRRC4B	0	genome.wustl.edu	37	19	51021607	51021607	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	51021607	51021607	C	G	SNP	LRRC4B	ENST00000389201	human	ensembl	74_37	-1	known	missense	c.1363	p.A455P	1.000	NULL	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRC4B	HGNC	ENSG00000131409				30	0	0	13	12	48
KDM4B	0	genome.wustl.edu	37	19	5119686	5119686	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	5119686	5119686	C	T	SNP	KDM4B	ENST00000159111	human	ensembl	74_37	+1	known	missense	c.1138	p.P380S	1.000	NULL	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4B	HGNC	ENSG00000127663				10	0	0	4	3	42.8571
GPR32	0	genome.wustl.edu	37	19	51274765	51274765	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	51274765	51274765	C	T	SNP	GPR32	ENST00000270590	human	ensembl	74_37	+1	known	missense	c.908	p.A303V	0.107	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Formyl_pep_rcpt	-	no_errors	GPR32	HGNC	ENSG00000142511				59	0	0	45	19	29.6875
PTPRS	0	genome.wustl.edu	37	19	5222821	5222821	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	5222821	5222821	C	T	SNP	PTPRS	ENST00000372412	human	ensembl	74_37	-1	known	silent	c.2985	p.A995	0.266	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom	-	no_errors	PTPRS	HGNC	ENSG00000105426				13	0	0	8	7	46.6667
ZNF761	0	genome.wustl.edu	37	19	53950474	53950474	+	RNA	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	53950474	53950474	C	T	SNP	ZNF761	ENST00000429310	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	ZNF761	HGNC	ENSG00000160336				68	0	0	72	29	28.7129
MBOAT7	0	genome.wustl.edu	37	19	54682578	54682578	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	54682578	54682578	C	T	SNP	MBOAT7	ENST00000245615	human	ensembl	74_37	-1	known	missense	c.935	p.R312Q	0.998	pfam_MBOAT_fam	pfam_MBOAT_fam	-	no_errors	MBOAT7	HGNC	ENSG00000125505				34	0	0	21	14	40
LILRB3	0	genome.wustl.edu	37	19	54720983	54720983	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	54720983	54720983	G	A	SNP	LILRB3	ENST00000407860	human	ensembl	74_37	-1	known	silent	c.1926	p.Y642	0.001	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LILRB3	HGNC	ENSG00000204577				64	0	0	50	22	30.5556
KIR2DL3	0	genome.wustl.edu	37	19	55263120	55263120	+	Silent	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	55263120	55263120	T	C	SNP	KIR2DL3	ENST00000342376	human	ensembl	74_37	+1	known	silent	c.735	p.H245	0.001	NULL	pfam_Immunoglobulin,smart_Ig_sub	-	no_errors	KIR2DL3	HGNC	ENSG00000243772				161	0	0	121	38	23.8994
NCR1	0	genome.wustl.edu	37	19	55420752	55420752	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	55420752	55420752	C	T	SNP	NCR1	ENST00000291890	human	ensembl	74_37	+1	known	silent	c.504	p.Y168	0.000	smart_Ig_sub	smart_Ig_sub	-	no_errors	NCR1	HGNC	ENSG00000189430				82	0	0	50	22	30.5556
NLRP9	0	genome.wustl.edu	37	19	56243922	56243922	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	56243922	56243922	G	A	SNP	NLRP9	ENST00000332836	human	ensembl	74_37	-1	known	silent	c.1275	p.G425	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP9	HGNC	ENSG00000185792				138	0	0	115	45	28.125
ZNF667-AS1	0	genome.wustl.edu	37	19	57006454	57006454	+	RNA	SNP	C	C	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	57006454	57006454	C	G	SNP	ZNF667-AS1	ENST00000299997	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.588	-	-	-	no_errors	ZNF667-AS1	HGNC	ENSG00000166770				11	0	0	2	3	60
PEG3	0	genome.wustl.edu	37	19	57333110	57333110	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	57333110	57333110	C	T	SNP	PEG3	ENST00000326441	human	ensembl	74_37	-1	known	missense	c.578	p.R193Q	0.552	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	PEG3	HGNC	ENSG00000198300				126	0	0	107	42	28.1879
ZNF17	0	genome.wustl.edu	37	19	57931842	57931842	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	57931842	57931842	C	T	SNP	ZNF17	ENST00000601808	human	ensembl	74_37	+1	known	missense	c.982	p.R328W	0.997	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF17	HGNC	ENSG00000186272				69	0	0	44	33	42.8571
ZNF549	0	genome.wustl.edu	37	19	58048866	58048866	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	58048866	58048866	G	T	SNP	ZNF549	ENST00000376233	human	ensembl	74_37	+1	known	missense	c.494	p.S165I	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF549	HGNC	ENSG00000121406				66	0	0	54	31	36.4706
ZNF416	0	genome.wustl.edu	37	19	58083691	58083691	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	58083691	58083691	G	A	SNP	ZNF416	ENST00000196489	human	ensembl	74_37	-1	known	silent	c.1581	p.C527	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF416	HGNC	ENSG00000083817				84	0	0	66	35	34.6535
SLC27A5	0	genome.wustl.edu	37	19	59011792	59011792	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	59011792	59011792	A	G	SNP	SLC27A5	ENST00000263093	human	ensembl	74_37	-1	known	missense	c.1382	p.L461P	0.997	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	SLC27A5	HGNC	ENSG00000083807				76	0	0	46	15	24.5902
HCN2	0	genome.wustl.edu	37	19	613971	613971	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	613971	613971	C	T	SNP	HCN2	ENST00000251287	human	ensembl	74_37	+1	known	missense	c.1945	p.R649W	1.000	superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	HCN2	HGNC	ENSG00000099822				35	0	0	22	13	37.1429
INSR	0	genome.wustl.edu	37	19	7122772	7122772	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	7122772	7122772	G	A	SNP	INSR	ENST00000302850	human	ensembl	74_37	-1	known	missense	c.3382	p.R1128C	1.000	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_Fibronectin_type3,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom	-	no_errors	INSR	HGNC	ENSG00000171105				27	0	0	14	12	46.1538
ZNF358	0	genome.wustl.edu	37	19	7585781	7585781	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	7585781	7585781	C	T	SNP	ZNF358	ENST00000394341	human	ensembl	74_37	+1	known	silent	c.1653	p.G551	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF358	HGNC	ENSG00000198816				57	0	0	34	21	38.1818
CAMSAP3	0	genome.wustl.edu	37	19	7682715	7682715	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	7682715	7682715	G	A	SNP	CAMSAP3	ENST00000446248	human	ensembl	74_37	+1	known	silent	c.3603	p.T1201	0.000	pfam_CKK_domain,superfamily_PRC_barrel-like	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrel-like,superfamily_CH-domain	-	no_errors	CAMSAP3	HGNC	ENSG00000076826				25	0	0	15	23	60.5263
MAP2K7	0	genome.wustl.edu	37	19	7975196	7975196	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	7975196	7975196	G	A	SNP	MAP2K7	ENST00000545011	human	ensembl	74_37	+1	known	missense	c.511	p.G171S	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP2K7	HGNC	ENSG00000076984				15	0	0	18	9	33.3333
MAP2K7	0	genome.wustl.edu	37	19	7975348	7975348	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	7975348	7975348	G	A	SNP	MAP2K7	ENST00000545011	human	ensembl	74_37	+1	known	missense	c.584	p.R195H	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP2K7	HGNC	ENSG00000076984				22	0	0	12	6	33.3333
MAP2K7	0	genome.wustl.edu	37	19	7976201	7976201	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	7976201	7976201	C	A	SNP	MAP2K7	ENST00000545011	human	ensembl	74_37	+1	known	missense	c.1048	p.L350M	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP2K7	HGNC	ENSG00000076984				43	0	0	38	19	33.3333
FBN3	0	genome.wustl.edu	37	19	8176641	8176641	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	8176641	8176641	G	A	SNP	FBN3	ENST00000270509	human	ensembl	74_37	-1	known	silent	c.3975	p.C1325	0.043	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_FBN,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449				42	0	0	29	11	27.5
CERS4	0	genome.wustl.edu	37	19	8320601	8320601	+	Silent	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	8320601	8320601	T	C	SNP	CERS4	ENST00000251363	human	ensembl	74_37	+1	known	silent	c.402	p.C134	0.997	pfam_TLC-dom,smart_TLC-dom,pirsf_Longevity_assurance_LAG1_LAC1,pfscan_TLC-dom	pfam_TLC-dom,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_TLC-dom,pirsf_Longevity_assurance_LAG1_LAC1,pfscan_TLC-dom,pfscan_Homeobox_dom	-	no_errors	CERS4	HGNC	ENSG00000090661				15	0	0	11	4	26.6667
HNRNPM	0	genome.wustl.edu	37	19	8533719	8533719	+	Splice_Site	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	8533719	8533719	G	A	SNP	HNRNPM	ENST00000325495	human	ensembl	74_37	+1	known	splice_site	c.895+1	e9+1	1.000	-	-	-	no_errors	HNRNPM	HGNC	ENSG00000099783				55	0	0	39	12	23.5294
MUC16	0	genome.wustl.edu	37	19	9069699	9069699	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	9069699	9069699	T	C	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.17747	p.Q5916R	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				86	0	0	67	29	30.2083
ZNF560	0	genome.wustl.edu	37	19	9578164	9578164	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	9578164	9578164	G	A	SNP	ZNF560	ENST00000301480	human	ensembl	74_37	-1	known	missense	c.1459	p.R487C	0.148	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF560	HGNC	ENSG00000198028				167	0	0	131	56	29.9465
EIF5B	0	genome.wustl.edu	37	2	100013282	100013282	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	100013282	100013282	G	A	SNP	EIF5B	ENST00000289371	human	ensembl	74_37	+1	known	missense	c.3314	p.R1105Q	1.000	superfamily_Transl_B-barrel	pfam_EF_GTP-bd_dom,pfam_TIF_IF2_dom3,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Transl_B-barrel,superfamily_TIF_IF2_dom3,prints_EF_GTP-bd_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	EIF5B	HGNC	ENSG00000158417				81	0	0	56	19	25.3333
PDCL3	0	genome.wustl.edu	37	2	101188062	101188062	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	101188062	101188062	T	C	SNP	PDCL3	ENST00000264254	human	ensembl	74_37	+1	known	missense	c.379	p.C127R	1.000	pfam_Phosducin_thioredoxin-like_dom,superfamily_Thioredoxin-like_fold	pfam_Phosducin_thioredoxin-like_dom,superfamily_Thioredoxin-like_fold,tigrfam_Antitoxin_Phd/YefM	-	no_errors	PDCL3	HGNC	ENSG00000115539				60	0	0	71	22	23.6559
HPCAL1	0	genome.wustl.edu	37	2	10560003	10560003	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	10560003	10560003	C	T	SNP	HPCAL1	ENST00000307845	human	ensembl	74_37	+1	known	silent	c.120	p.T40	0.923	prints_Recoverin	pfam_EF_hand_dom,pfam_SPARC/Testican_Ca-bd-dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	-	no_errors	HPCAL1	HGNC	ENSG00000115756				44	0	0	36	23	38.9831
GREB1	0	genome.wustl.edu	37	2	11756801	11756801	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	11756801	11756801	C	T	SNP	GREB1	ENST00000234142	human	ensembl	74_37	+1	known	missense	c.3367	p.R1123C	0.001	NULL	superfamily_P-loop_NTPase	-	no_errors	GREB1	HGNC	ENSG00000196208				176	0	0	150	69	31.5068
INSIG2	0	genome.wustl.edu	37	2	118860775	118860775	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	118860775	118860775	G	A	SNP	INSIG2	ENST00000245787	human	ensembl	74_37	+1	known	missense	c.247	p.V83M	1.000	pfam_INSIG_fam	pfam_INSIG_fam	-	no_errors	INSIG2	HGNC	ENSG00000125629				83	0	0	81	74	47.7419
STEAP3	0	genome.wustl.edu	37	2	120020821	120020821	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	120020821	120020821	C	T	SNP	STEAP3	ENST00000393110	human	ensembl	74_37	+1	known	silent	c.1404	p.L468	0.007	NULL	pfam_Fe3_Rdtase_TM_dom	-	no_errors	STEAP3	HGNC	ENSG00000115107				45	0	0	47	23	32.8571
TMEM37	0	genome.wustl.edu	37	2	120195018	120195018	+	RNA	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	120195018	120195018	C	T	SNP	TMEM37	ENST00000465296	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	TMEM37	HGNC	ENSG00000171227				146	0	0	103	56	35.2201
INHBB	0	genome.wustl.edu	37	2	121107076	121107076	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	121107076	121107076	G	A	SNP	INHBB	ENST00000295228	human	ensembl	74_37	+1	known	missense	c.850	p.D284N	0.997	NULL	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_betaB,prints_Inhibin_asu	-	no_errors	INHBB	HGNC	ENSG00000163083				36	0	0	29	15	34.0909
TUBA3E	0	genome.wustl.edu	37	2	130951399	130951399	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	130951399	130951399	C	T	SNP	TUBA3E	ENST00000312988	human	ensembl	74_37	-1	known	missense	c.1016	p.R339H	1.000	pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tub_FtsZ_C,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin	-	no_errors	TUBA3E	HGNC	ENSG00000152086				92	0	0	86	36	29.5082
THSD7B	0	genome.wustl.edu	37	2	137852592	137852592	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	137852592	137852592	A	T	SNP	THSD7B	ENST00000272643	human	ensembl	74_37	+1	known	missense	c.1100	p.N367I	0.065	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7B	HGNC	ENSG00000144229				67	0	0	38	33	46.4789
SPOPL	0	genome.wustl.edu	37	2	139326628	139326628	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	139326628	139326628	G	A	SNP	SPOPL	ENST00000280098	human	ensembl	74_37	+1	known	missense	c.1157	p.R386H	1.000	NULL	pfam_BTB_POZ,pfam_MATH,superfamily_TRAF-like,superfamily_BTB/POZ_fold,smart_MATH,smart_BTB/POZ-like,pfscan_BTB/POZ-like,pfscan_MATH	-	no_errors	SPOPL	HGNC	ENSG00000144228				287	1	0.347222	249	125	33.4225
GTDC1	0	genome.wustl.edu	37	2	144710386	144710386	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	144710386	144710386	A	C	SNP	GTDC1	ENST00000344850	human	ensembl	74_37	-1	known	missense	c.1155	p.C385W	1.000	pfam_Glyco_trans_1	pfam_GlycosylTrfase_1_N,pfam_Glyco_trans_1	-	no_errors	GTDC1	HGNC	ENSG00000121964				102	0	0	74	40	35.0877
TPO	0	genome.wustl.edu	37	2	1459959	1459959	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	1459959	1459959	G	A	SNP	TPO	ENST00000329066	human	ensembl	74_37	+1	known	missense	c.724	p.A242T	0.872	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	pfam_Haem_peroxidase_animal,pfam_EGF-like_Ca-bd_dom,superfamily_Haem_peroxidase,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	TPO	HGNC	ENSG00000115705				36	0	0	44	5	10.2041
ACVR2A	0	genome.wustl.edu	37	2	148674946	148674946	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	148674946	148674946	G	A	SNP	ACVR2A	ENST00000241416	human	ensembl	74_37	+1	known	missense	c.767	p.G256D	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_TGFB_receptor	-	no_errors	ACVR2A	HGNC	ENSG00000121989				49	0	0	35	18	33.9623
NEB	0	genome.wustl.edu	37	2	152521924	152521924	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	152521924	152521924	C	T	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	missense	c.5161	p.E1721K	0.967	smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091				43	0	0	25	35	58.3333
FAP	0	genome.wustl.edu	37	2	163072486	163072486	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	163072486	163072486	C	T	SNP	FAP	ENST00000188790	human	ensembl	74_37	-1	known	missense	c.788	p.R263Q	0.947	pfam_Peptidase_S9B	pfam_Peptidase_S9B,pfam_Peptidase_S9	-	no_errors	FAP	HGNC	ENSG00000078098				47	0	0	17	36	67.9245
PXDN	0	genome.wustl.edu	37	2	1657550	1657550	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	1657550	1657550	G	A	SNP	PXDN	ENST00000252804	human	ensembl	74_37	-1	known	missense	c.1954	p.R652C	1.000	NULL	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDN	HGNC	ENSG00000130508				16	0	0	12	8	40
HOXD4	0	genome.wustl.edu	37	2	177017383	177017383	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	177017383	177017383	T	C	SNP	HOXD4	ENST00000306324	human	ensembl	74_37	+1	known	missense	c.481	p.Y161H	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_antennapedia	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa,prints_Homeobox_antennapedia	-	no_errors	HOXD4	HGNC	ENSG00000170166				62	0	0	20	26	56.5217
TTN	0	genome.wustl.edu	37	2	179397385	179397385	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	179397385	179397385	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.96253	p.R32085C	1.000	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				80	0	0	63	21	25
TTN	0	genome.wustl.edu	37	2	179435651	179435651	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	179435651	179435651	C	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.67504	p.G22502C	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				135	0	0	155	9	5.4878
TTN	0	genome.wustl.edu	37	2	179499546	179499546	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	179499546	179499546	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.34351	p.R11451C	1.000	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				61	0	0	41	58	58.5859
KCNS3	0	genome.wustl.edu	37	2	18112315	18112315	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	18112315	18112315	G	A	SNP	KCNS3	ENST00000304101	human	ensembl	74_37	+1	known	missense	c.40	p.E14K	1.000	superfamily_BTB/POZ_fold	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv2	-	no_errors	KCNS3	HGNC	ENSG00000170745				79	0	0	51	17	25
NCKAP1	0	genome.wustl.edu	37	2	183867725	183867725	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	183867725	183867725	C	T	SNP	NCKAP1	ENST00000360982	human	ensembl	74_37	-1	known	missense	c.364	p.V122I	1.000	pfam_Nck-associated_protein-1	pfam_Nck-associated_protein-1	-	no_errors	NCKAP1	HGNC	ENSG00000061676				40	0	0	10	24	70.5882
ZSWIM2	0	genome.wustl.edu	37	2	187698688	187698688	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	187698688	187698688	C	T	SNP	ZSWIM2	ENST00000295131	human	ensembl	74_37	-1	known	silent	c.813	p.T271	0.001	NULL	pfam_Znf_SWIM,pfam_Znf_ZZ,smart_Znf_RING,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Znf_ZZ	-	no_errors	ZSWIM2	HGNC	ENSG00000163012				50	0	0	51	23	31.0811
PMS1	0	genome.wustl.edu	37	2	190656532	190656532	+	RNA	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	190656532	190656532	G	A	SNP	PMS1	ENST00000421722	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	PMS1	HGNC	ENSG00000064933				42	0	0	35	19	35.1852
MFSD6	0	genome.wustl.edu	37	2	191301046	191301046	+	Silent	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	191301046	191301046	A	G	SNP	MFSD6	ENST00000281416	human	ensembl	74_37	+1	known	silent	c.291	p.G97	0.861	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD6	HGNC	ENSG00000151690				106	1	0.934579	45	76	62.8099
STAT1	0	genome.wustl.edu	37	2	191850352	191850352	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	191850352	191850352	G	A	SNP	STAT1	ENST00000361099	human	ensembl	74_37	-1	known	missense	c.1256	p.T419M	0.999	pfam_STAT_TF_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_STAT1_TAZ2-bd_C,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,pfscan_SH2	-	no_errors	STAT1	HGNC	ENSG00000115415				66	0	0	26	44	62.8571
PLCL1	0	genome.wustl.edu	37	2	198950564	198950564	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	198950564	198950564	A	G	SNP	PLCL1	ENST00000428675	human	ensembl	74_37	+1	known	missense	c.2323	p.N775D	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCL1	HGNC	ENSG00000115896				95	0	0	74	24	24.4898
PLCL1	0	genome.wustl.edu	37	2	198950794	198950794	+	Silent	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	198950794	198950794	T	C	SNP	PLCL1	ENST00000428675	human	ensembl	74_37	+1	known	silent	c.2553	p.S851	0.975	NULL	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCL1	HGNC	ENSG00000115896				64	0	0	43	16	27.1186
PLCL1	0	genome.wustl.edu	37	2	199011601	199011601	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	199011601	199011601	C	A	SNP	PLCL1	ENST00000428675	human	ensembl	74_37	+1	known	missense	c.3203	p.P1068H	0.031	NULL	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCL1	HGNC	ENSG00000115896				58	0	0	23	44	65.6716
ALS2	0	genome.wustl.edu	37	2	202625614	202625614	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	202625614	202625614	A	G	SNP	ALS2	ENST00000264276	human	ensembl	74_37	-1	known	missense	c.1103	p.V368A	0.000	NULL	pfam_Reg_chr_condens,pfam_MORN,pfam_VPS9,pfam_DH-domain,superfamily_RCC1/BLIP-II,superfamily_DH-domain,smart_MORN,pfscan_VPS9,pfscan_Reg_chr_condens,pfscan_DH-domain,prints_Reg_chr_condens	-	no_errors	ALS2	HGNC	ENSG00000003393				64	0	0	42	23	35.3846
SDC1	0	genome.wustl.edu	37	2	20402951	20402951	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	20402951	20402951	C	T	SNP	SDC1	ENST00000254351	human	ensembl	74_37	-1	known	silent	c.660	p.T220	0.000	pfam_Syndecan/Neurexin_dom	pfam_Syndecan/Neurexin_dom,smart_Neurexin-like	-	no_errors	SDC1	HGNC	ENSG00000115884				40	0	0	29	21	42
ZDBF2	0	genome.wustl.edu	37	2	207174321	207174321	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	207174321	207174321	G	A	SNP	ZDBF2	ENST00000374423	human	ensembl	74_37	+1	known	missense	c.5069	p.R1690Q	0.001	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186				92	0	0	42	68	61.8182
CREB1	0	genome.wustl.edu	37	2	208424959	208424959	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	208424959	208424959	C	T	SNP	CREB1	ENST00000432329	human	ensembl	74_37	+1	known	missense	c.124	p.P42S	1.000	NULL	pfam_Coactivator_CBP_pKID,pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_Coactivator_CBP_pKID,pfscan_bZIP,prints_Leuzip_CREB	-	no_errors	CREB1	HGNC	ENSG00000118260				79	0	0	48	30	38.4615
IKZF2	0	genome.wustl.edu	37	2	213872376	213872376	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	213872376	213872376	C	A	SNP	IKZF2	ENST00000434687	human	ensembl	74_37	-1	known	missense	c.1289	p.R430M	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	IKZF2	HGNC	ENSG00000030419				201	0	0	124	62	33.3333
SMARCAL1	0	genome.wustl.edu	37	2	217315720	217315720	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	217315720	217315720	G	A	SNP	SMARCAL1	ENST00000357276	human	ensembl	74_37	+1	known	missense	c.2003	p.R668Q	0.838	pfam_SNF2_N,superfamily_P-loop_NTPase	pfam_HARP_dom,pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCAL1	HGNC	ENSG00000138375				47	0	0	39	15	27.7778
TNS1	0	genome.wustl.edu	37	2	218678471	218678471	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	218678471	218678471	C	T	SNP	TNS1	ENST00000171887	human	ensembl	74_37	-1	known	missense	c.4486	p.A1496T	1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_dom,smart_Tyr_Pase_cat,smart_SH2,smart_PTB/PI_dom,pfscan_SH2,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS1	HGNC	ENSG00000079308				46	0	0	17	44	72.1311
C2orf62	0	genome.wustl.edu	37	2	219229425	219229425	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	219229425	219229425	C	T	SNP	C2orf62	ENST00000289388	human	ensembl	74_37	+1	known	silent	c.705	p.H235	0.999	NULL	superfamily_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	C2orf62	HGNC	ENSG00000158428				75	0	0	44	28	38.8889
CCDC108	0	genome.wustl.edu	37	2	219893021	219893021	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	219893021	219893021	G	A	SNP	CCDC108	ENST00000341552	human	ensembl	74_37	-1	known	missense	c.1753	p.R585W	0.977	NULL	superfamily_PapD-like,pfscan_MSP_dom	-	no_errors	CCDC108	HGNC	ENSG00000181378				74	0	0	24	52	68.4211
TUBA4B	0	genome.wustl.edu	37	2	220136053	220136053	+	RNA	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	220136053	220136053	A	G	SNP	TUBA4B	ENST00000490341	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.992	-	-	-	no_errors	TUBA4B	HGNC	ENSG00000243910				79	0	0	77	20	20.6186
ACSL3	0	genome.wustl.edu	37	2	223791754	223791754	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	223791754	223791754	C	T	SNP	ACSL3	ENST00000357430	human	ensembl	74_37	+1	known	nonsense	c.1312	p.R438*	0.999	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSL3	HGNC	ENSG00000123983				63	0	0	15	32	68.0851
NYAP2	0	genome.wustl.edu	37	2	226447629	226447629	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	226447629	226447629	C	T	SNP	NYAP2	ENST00000272907	human	ensembl	74_37	+1	known	missense	c.1496	p.P499L	0.427	NULL	NULL	-	no_errors	NYAP2	HGNC	ENSG00000144460				24	0	0	4	14	77.7778
COL4A4	0	genome.wustl.edu	37	2	227924228	227924228	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	227924228	227924228	G	A	SNP	COL4A4	ENST00000396625	human	ensembl	74_37	-1	known	missense	c.2276	p.P759L	0.552	NULL	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A4	HGNC	ENSG00000081052				94	0	0	36	74	67.2727
ALPI	0	genome.wustl.edu	37	2	233323610	233323610	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	233323610	233323610	G	A	SNP	ALPI	ENST00000295463	human	ensembl	74_37	+1	known	silent	c.1341	p.S447	0.000	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase,prints_Alkaline_phosphatase	-	no_errors	ALPI	HGNC	ENSG00000163295				10	0	0	3	10	76.9231
CHRND	0	genome.wustl.edu	37	2	233393281	233393281	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	233393281	233393281	C	T	SNP	CHRND	ENST00000258385	human	ensembl	74_37	+1	known	silent	c.424	p.L142	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRND	HGNC	ENSG00000135902				123	0	0	38	100	72.4638
COL6A3	0	genome.wustl.edu	37	2	238233452	238233452	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	238233452	238233452	C	T	SNP	COL6A3	ENST00000295550	human	ensembl	74_37	-1	known	missense	c.9499	p.A3167T	0.000	NULL	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359				46	0	0	9	32	78.0488
COL6A3	0	genome.wustl.edu	37	2	238253700	238253700	+	Splice_Site	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	238253700	238253700	C	T	SNP	COL6A3	ENST00000295550	human	ensembl	74_37	-1	known	splice_site	c.7162+1	e33+1	1.000	-	-	-	no_errors	COL6A3	HGNC	ENSG00000163359				48	0	0	11	26	70.2703
COL6A3	0	genome.wustl.edu	37	2	238277739	238277739	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	238277739	238277739	C	T	SNP	COL6A3	ENST00000295550	human	ensembl	74_37	-1	known	missense	c.4367	p.R1456Q	0.977	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359				45	0	0	14	37	72.549
MYEOV2	0	genome.wustl.edu	37	2	241066179	241066179	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	241066179	241066179	C	T	SNP	MYEOV2	ENST00000307266	human	ensembl	74_37	-1	known	missense	c.560	p.R187Q	0.000	NULL	NULL	-	no_errors	MYEOV2	HGNC	ENSG00000172428				94	0	0	93	41	30.597
ANKMY1	0	genome.wustl.edu	37	2	241492466	241492466	+	Silent	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	241492466	241492466	A	G	SNP	ANKMY1	ENST00000272972	human	ensembl	74_37	-1	known	silent	c.78	p.H26	0.001	pfam_MORN,smart_MORN	pfam_Ankyrin_rpt,pfam_MORN,pfam_Znf_MYND,superfamily_Ankyrin_rpt-contain_dom,smart_MORN,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Znf_MYND	-	no_errors	ANKMY1	HGNC	ENSG00000144504				32	0	0	25	19	43.1818
GPR35	0	genome.wustl.edu	37	2	241569453	241569453	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	241569453	241569453	C	T	SNP	GPR35	ENST00000438013	human	ensembl	74_37	+1	known	silent	c.177	p.G59	0.001	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR35	HGNC	ENSG00000178623				39	0	0	17	30	63.8298
C2orf54	0	genome.wustl.edu	37	2	241831149	241831149	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	241831149	241831149	C	T	SNP	C2orf54	ENST00000388934	human	ensembl	74_37	-1	known	silent	c.546	p.E182	0.392	NULL	NULL	-	no_errors	C2orf54	HGNC	ENSG00000172478				47	0	0	21	24	53.3333
STK25	0	genome.wustl.edu	37	2	242439681	242439681	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	242439681	242439681	G	T	SNP	STK25	ENST00000316586	human	ensembl	74_37	-1	known	missense	c.334	p.L112M	0.993	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	STK25	HGNC	ENSG00000115694				64	0	0	57	15	20.8333
CXXC11	0	genome.wustl.edu	37	2	242815105	242815105	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	242815105	242815105	G	A	SNP	CXXC11	ENST00000343216	human	ensembl	74_37	+1	known	silent	c.1398	p.T466	0.000	NULL	NULL	-	no_errors	CXXC11	HGNC	ENSG00000188011				44	0	0	17	21	55.2632
DTNB	0	genome.wustl.edu	37	2	25611124	25611124	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	25611124	25611124	G	A	SNP	DTNB	ENST00000406818	human	ensembl	74_37	-1	known	missense	c.1682	p.P561L	0.998	pirsf_Distrobrevin	pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_Znf_ZZ,smart_Znf_ZZ,pirsf_Distrobrevin,pfscan_Znf_ZZ	-	no_errors	DTNB	HGNC	ENSG00000138101				14	0	0	4	4	50
KIF3C	0	genome.wustl.edu	37	2	26203351	26203351	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	26203351	26203351	C	T	SNP	KIF3C	ENST00000264712	human	ensembl	74_37	-1	known	missense	c.1436	p.R479H	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF3C	HGNC	ENSG00000084731				68	0	0	34	15	30.6122
KCNK3	0	genome.wustl.edu	37	2	26950703	26950703	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	26950703	26950703	G	A	SNP	KCNK3	ENST00000302909	human	ensembl	74_37	+1	known	missense	c.452	p.R151H	1.000	pirsf_2pore_dom_K_chnl_TASK,prints_KCNK3	pfam_2pore_dom_K_chnl_dom,pirsf_2pore_dom_K_chnl_TASK,prints_2pore_dom_K_chnl_TASK,prints_KCNK3,prints_2pore_dom_K_chnl	-	no_errors	KCNK3	HGNC	ENSG00000171303				39	0	0	25	16	39.0244
DPYSL5	0	genome.wustl.edu	37	2	27150265	27150265	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	27150265	27150265	C	T	SNP	DPYSL5	ENST00000288699	human	ensembl	74_37	+1	known	missense	c.565	p.R189C	1.000	pfam_Amidohydro_1,tigrfam_Hydantoinase/dihydroPyrase	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	DPYSL5	HGNC	ENSG00000157851				32	0	0	26	14	35
AGBL5	0	genome.wustl.edu	37	2	27278613	27278613	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	27278613	27278613	G	A	SNP	AGBL5	ENST00000360131	human	ensembl	74_37	+1	known	silent	c.972	p.P324	0.011	pfam_Peptidase_M14	pfam_Peptidase_M14	-	no_errors	AGBL5	HGNC	ENSG00000084693				75	0	0	71	37	34.2593
AGBL5	0	genome.wustl.edu	37	2	27282079	27282079	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	27282079	27282079	C	T	SNP	AGBL5	ENST00000360131	human	ensembl	74_37	+1	known	silent	c.1896	p.S632	1.000	NULL	pfam_Peptidase_M14	-	no_errors	AGBL5	HGNC	ENSG00000084693				173	0	0	128	60	31.9149
IFT172	0	genome.wustl.edu	37	2	27679392	27679392	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	27679392	27679392	G	A	SNP	IFT172	ENST00000260570	human	ensembl	74_37	-1	known	silent	c.3357	p.H1119	0.967	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat	-	no_errors	IFT172	HGNC	ENSG00000138002				70	0	0	53	20	27.3973
PLB1	0	genome.wustl.edu	37	2	28825712	28825712	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	28825712	28825712	G	A	SNP	PLB1	ENST00000422425	human	ensembl	74_37	+1	known	missense	c.2665	p.V889M	0.997	pfam_Lipase_GDSL	pfam_Lipase_GDSL	-	no_errors	PLB1	HGNC	ENSG00000163803				131	1	0.757576	81	48	37.2093
TMEM178A	0	genome.wustl.edu	37	2	39931305	39931305	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	39931305	39931305	C	T	SNP	TMEM178A	ENST00000281961	human	ensembl	74_37	+1	known	missense	c.485	p.T162I	0.989	NULL	NULL	-	no_errors	TMEM178A	HGNC	ENSG00000152154				45	0	0	39	18	31.5789
ABCG8	0	genome.wustl.edu	37	2	44079930	44079930	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	44079930	44079930	C	T	SNP	ABCG8	ENST00000272286	human	ensembl	74_37	+1	known	missense	c.887	p.A296V	0.010	superfamily_P-loop_NTPase,pfscan_ABC_transporter-like	pfam_ABC_2_trans,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,pfscan_ABC_transporter-like	-	no_errors	ABCG8	HGNC	ENSG00000143921				70	0	0	53	20	27.3973
SRBD1	0	genome.wustl.edu	37	2	45778340	45778340	+	Silent	SNP	A	A	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	45778340	45778340	A	C	SNP	SRBD1	ENST00000263736	human	ensembl	74_37	-1	known	silent	c.1599	p.P533	0.952	NULL	pfam_Tex-like_N,pfam_Rbsml_prot_S1_RNA-bd_dom,superfamily_NA-bd_OB-fold,superfamily_RuvA_2-like,smart_YqgF/RNaseH-like_dom,smart_RNA-binding_domain_S1,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	SRBD1	HGNC	ENSG00000068784				61	0	0	44	20	31.25
SRBD1	0	genome.wustl.edu	37	2	45800478	45800478	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	45800478	45800478	G	A	SNP	SRBD1	ENST00000263736	human	ensembl	74_37	-1	known	silent	c.1173	p.C391	0.980	pfam_Tex-like_N	pfam_Tex-like_N,pfam_Rbsml_prot_S1_RNA-bd_dom,superfamily_NA-bd_OB-fold,superfamily_RuvA_2-like,smart_YqgF/RNaseH-like_dom,smart_RNA-binding_domain_S1,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	SRBD1	HGNC	ENSG00000068784				22	0	0	26	10	27.7778
FSHR	0	genome.wustl.edu	37	2	49210115	49210115	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	49210115	49210115	C	T	SNP	FSHR	ENST00000406846	human	ensembl	74_37	-1	known	missense	c.604	p.D202N	1.000	pfam_Leu-rich_rpt,prints_FSH_rcpt,prints_TSH_rcpt	pfam_GPCR_Rhodpsn,pfam_GnHR_TM,pfam_LRR-contain_N,pfam_Leu-rich_rpt,smart_LRR-contain_N,pfscan_GPCR_Rhodpsn_7TM,prints_FSH_rcpt,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn,prints_TSH_rcpt	-	no_errors	FSHR	HGNC	ENSG00000170820				71	0	0	52	15	22.3881
NRXN1	0	genome.wustl.edu	37	2	50318469	50318469	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	50318469	50318469	T	C	SNP	NRXN1	ENST00000402717	human	ensembl	74_37	-1	known	missense	c.3686	p.Y1229C	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN1	HGNC	ENSG00000179915				142	0	0	110	56	33.7349
NRXN1	0	genome.wustl.edu	37	2	50573961	50573961	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	50573961	50573961	C	T	SNP	NRXN1	ENST00000342183	human	ensembl	74_37	-1	known	missense	c.127	p.G43S	1.000	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_Neurexin-like,pfscan_Laminin_G	-	no_errors	NRXN1	HGNC	ENSG00000179915				18	0	0	10	3	23.0769
USP34	0	genome.wustl.edu	37	2	61441428	61441428	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	61441428	61441428	G	A	SNP	USP34	ENST00000398571	human	ensembl	74_37	-1	known	missense	c.8449	p.R2817C	1.000	superfamily_ARM-type_fold	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	-	no_errors	USP34	HGNC	ENSG00000115464				178	0	0	142	53	27.1795
B3GNT2	0	genome.wustl.edu	37	2	62450427	62450427	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	62450427	62450427	A	G	SNP	B3GNT2	ENST00000301998	human	ensembl	74_37	+1	known	missense	c.1072	p.I358V	1.000	NULL	pfam_Glyco_trans_31	-	no_errors	B3GNT2	HGNC	ENSG00000170340				49	0	0	59	4	6.34921
ANXA4	0	genome.wustl.edu	37	2	70039823	70039823	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	70039823	70039823	C	T	SNP	ANXA4	ENST00000394295	human	ensembl	74_37	+1	known	silent	c.516	p.L172	0.018	prints_AnnexinV	pfam_Annexin_repeat,smart_Annexin_repeat,prints_Annexin,prints_AnnexinIV,prints_AnnexinV	-	no_errors	ANXA4	HGNC	ENSG00000196975				33	0	0	32	17	34.6939
CLEC4F	0	genome.wustl.edu	37	2	71043196	71043196	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	71043196	71043196	C	A	SNP	CLEC4F	ENST00000272367	human	ensembl	74_37	-1	known	missense	c.1317	p.Q439H	0.056	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_Prefoldin,smart_C-type_lectin,prints_AntifreezeII,pfscan_C-type_lectin	-	no_errors	CLEC4F	HGNC	ENSG00000152672				54	0	0	44	25	36.2319
VAX2	0	genome.wustl.edu	37	2	71148370	71148370	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	71148370	71148370	C	T	SNP	VAX2	ENST00000234392	human	ensembl	74_37	+1	known	silent	c.390	p.R130	0.115	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	VAX2	HGNC	ENSG00000116035				32	0	0	15	8	34.7826
ZNF638	0	genome.wustl.edu	37	2	71591248	71591248	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	71591248	71591248	G	A	SNP	ZNF638	ENST00000264447	human	ensembl	74_37	+1	known	missense	c.1583	p.R528H	0.926	NULL	pfam_RRM_dom,smart_Znf_U1,smart_Znf_C2H2-like,smart_RRM_dom,pfscan_Znf_C2H2_matrin,pfscan_RRM_dom	-	no_errors	ZNF638	HGNC	ENSG00000075292				77	0	0	69	33	32.3529
LRRTM1	0	genome.wustl.edu	37	2	80529936	80529936	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	80529936	80529936	C	T	SNP	LRRTM1	ENST00000295057	human	ensembl	74_37	-1	known	missense	c.1009	p.D337N	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM1	HGNC	ENSG00000162951				29	0	0	15	11	42.3077
PTCD3	0	genome.wustl.edu	37	2	86355071	86355071	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	86355071	86355071	G	A	SNP	PTCD3	ENST00000254630	human	ensembl	74_37	+1	known	silent	c.1104	p.S368	0.753	NULL	NULL	-	no_errors	PTCD3	HGNC	ENSG00000132300				67	0	0	57	33	36.6667
MBOAT2	0	genome.wustl.edu	37	2	9017344	9017344	+	Splice_Site	SNP	C	C	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	9017344	9017344	C	A	SNP	MBOAT2	ENST00000305997	human	ensembl	74_37	-1	known	splice_site	c.507-1	e7-1	1.000	-	-	-	no_errors	MBOAT2	HGNC	ENSG00000143797				35	0	0	25	14	35.8974
ASAP2	0	genome.wustl.edu	37	2	9515028	9515028	+	Silent	SNP	T	T	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	9515028	9515028	T	G	SNP	ASAP2	ENST00000281419	human	ensembl	74_37	+1	known	silent	c.1701	p.A567	0.983	superfamily_Ankyrin_rpt-contain_dom	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ASAP2	HGNC	ENSG00000151693				106	0	0	100	11	9.90991
ZAP70	0	genome.wustl.edu	37	2	98351851	98351851	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	98351851	98351851	C	T	SNP	ZAP70	ENST00000264972	human	ensembl	74_37	+1	known	silent	c.1221	p.A407	0.159	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,superfamily_Kinase-like_dom,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,pfscan_SH2,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ZAP70	HGNC	ENSG00000115085				91	0	0	50	33	39.759
CNGA3	0	genome.wustl.edu	37	2	99008387	99008387	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	99008387	99008387	G	A	SNP	CNGA3	ENST00000272602	human	ensembl	74_37	+1	known	silent	c.627	p.S209	0.000	pfam_Ion_trans_dom	pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA3	HGNC	ENSG00000144191				41	0	0	39	14	26.4151
LIPT1	0	genome.wustl.edu	37	2	99779031	99779031	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	99779031	99779031	C	T	SNP	LIPT1	ENST00000340066	human	ensembl	74_37	+1	known	missense	c.611	p.A204V	1.000	tigrfam_LipoylTrfase_LipoateP_Ligase	pfam_BPL_LipA_LipB,tigrfam_LipoylTrfase_LipoateP_Ligase	-	no_errors	LIPT1	HGNC	ENSG00000144182				71	0	0	59	33	35.8696
SNAP25	0	genome.wustl.edu	37	20	10277684	10277684	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	20	10277684	10277684	C	T	SNP	SNAP25	ENST00000254976	human	ensembl	74_37	+1	known	silent	c.393	p.G131	0.991	pfam_SNAP-25	pfam_T_SNARE_dom,pfam_SNAP-25,superfamily_t-SNARE,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	SNAP25	HGNC	ENSG00000132639				31	0	0	28	10	26.3158
JAG1	0	genome.wustl.edu	37	20	10622442	10622442	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	20	10622442	10622442	C	T	SNP	JAG1	ENST00000254958	human	ensembl	74_37	-1	known	missense	c.2671	p.A891T	0.901	smart_VWC_out,smart_VWF_C	pfam_EG-like_dom,pfam_Notch_ligand_N,pfam_DSL,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,smart_DSL,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_VWC_out,smart_VWF_C,pfscan_DSL,pfscan_EG-like_dom	-	no_errors	JAG1	HGNC	ENSG00000101384				182	0	0	133	57	30
PSMF1	0	genome.wustl.edu	37	20	1106263	1106263	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	20	1106263	1106263	C	T	SNP	PSMF1	ENST00000333082	human	ensembl	74_37	+1	known	silent	c.252	p.T84	0.358	pfam_FP_dom	pfam_FP_dom,pfam_PI31_Prot_Reg	-	no_errors	PSMF1	HGNC	ENSG00000125818				41	0	0	42	13	23.6364
OTOR	0	genome.wustl.edu	37	20	16729527	16729527	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	20	16729527	16729527	C	T	SNP	OTOR	ENST00000246081	human	ensembl	74_37	+1	known	missense	c.131	p.A44V	1.000	superfamily_SH3_domain,smart_SH3_domain	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain	-	no_errors	OTOR	HGNC	ENSG00000125879				36	0	0	27	7	20.5882
PCSK2	0	genome.wustl.edu	37	20	17462676	17462676	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	20	17462676	17462676	C	T	SNP	PCSK2	ENST00000262545	human	ensembl	74_37	+1	known	silent	c.1878	p.A626	0.488	NULL	pfam_Peptidase_S8/S53_dom,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53_dom,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK2	HGNC	ENSG00000125851				27	0	0	34	13	27.6596
CSRP2BP	0	genome.wustl.edu	37	20	18143418	18143418	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	20	18143418	18143418	G	A	SNP	CSRP2BP	ENST00000435364	human	ensembl	74_37	+1	known	silent	c.1500	p.A500	0.007	NULL	pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	CSRP2BP	HGNC	ENSG00000149474				134	0	0	117	58	33.1429
ZNF133	0	genome.wustl.edu	37	20	18296783	18296783	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	20	18296783	18296783	C	T	SNP	ZNF133	ENST00000396026	human	ensembl	74_37	+1	known	missense	c.1297	p.R433W	0.999	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF133	HGNC	ENSG00000125846				76	0	0	63	17	21.25
POLR3F	0	genome.wustl.edu	37	20	18448239	18448239	+	RNA	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	20	18448239	18448239	A	G	SNP	POLR3F	ENST00000462997	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	POLR3F	HGNC	ENSG00000132664				25	0	0	19	7	26.9231
C20orf26	0	genome.wustl.edu	37	20	20257973	20257973	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	20	20257973	20257973	G	A	SNP	C20orf26	ENST00000245957	human	ensembl	74_37	+1	known	silent	c.2667	p.A889	0.003	NULL	superfamily_Acyl_CoA_acyltransferase	-	no_errors	C20orf26	HGNC	ENSG00000089101				65	0	0	35	13	27.0833
PAX1	0	genome.wustl.edu	37	20	21687147	21687147	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	20	21687147	21687147	C	T	SNP	PAX1	ENST00000398485	human	ensembl	74_37	+1	known	missense	c.358	p.R120C	1.000	pfam_Paired_dom,superfamily_Homeodomain-like,smart_Paired_dom,pfscan_Paired_dom,prints_Paired_dom	pfam_Paired_dom,superfamily_Homeodomain-like,smart_Paired_dom,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX1	HGNC	ENSG00000125813				28	0	0	21	10	32.2581
PAX1	0	genome.wustl.edu	37	20	21687491	21687491	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	20	21687491	21687491	C	T	SNP	PAX1	ENST00000398485	human	ensembl	74_37	+1	known	silent	c.702	p.Y234	1.000	NULL	pfam_Paired_dom,superfamily_Homeodomain-like,smart_Paired_dom,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX1	HGNC	ENSG00000125813				35	0	0	21	8	27.5862
ACSS1	0	genome.wustl.edu	37	20	25011401	25011401	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	20	25011401	25011401	T	C	SNP	ACSS1	ENST00000323482	human	ensembl	74_37	-1	known	missense	c.625	p.N209D	1.000	pfam_AMP-dep_Synth/Lig,tigrfam_Ac_CoA_lig	pfam_AMP-dep_Synth/Lig,tigrfam_Ac_CoA_lig	-	no_errors	ACSS1	HGNC	ENSG00000154930				54	0	0	36	36	50
MAPRE1	0	genome.wustl.edu	37	20	31427543	31427543	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	20	31427543	31427543	C	T	SNP	MAPRE1	ENST00000375571	human	ensembl	74_37	+1	known	missense	c.478	p.P160S	1.000	NULL	pfam_EB1_C,pfam_CH-domain,superfamily_CH-domain,superfamily_EB1_C,pfscan_CH-domain	-	no_errors	MAPRE1	HGNC	ENSG00000101367				349	2	0.569801	342	55	13.8539
LZTS3	0	genome.wustl.edu	37	20	3146842	3146842	+	Silent	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	20	3146842	3146842	T	C	SNP	LZTS3	ENST00000329152	human	ensembl	74_37	-1	known	silent	c.624	p.P208	0.984	NULL	NULL	-	no_errors	LZTS3	Uniprot_gn	ENSG00000088899				16	0	0	7	4	36.3636
CDK5RAP1	0	genome.wustl.edu	37	20	31967484	31967484	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	20	31967484	31967484	A	G	SNP	CDK5RAP1	ENST00000357886	human	ensembl	74_37	-1	known	missense	c.932	p.V311A	1.000	pfam_rSAM,smart_Elp3/MiaB/NifB,tigrfam_MiaB_methiolase,tigrfam_Methylthiotransferase	pfam_rSAM,pfam_Methylthiotransferase_N,pfam_TRAM_dom,smart_Elp3/MiaB/NifB,pfscan_TRAM_dom,tigrfam_MiaB_methiolase,tigrfam_Methylthiotransferase	-	no_errors	CDK5RAP1	HGNC	ENSG00000101391				37	0	0	35	14	28.5714
CEP250	0	genome.wustl.edu	37	20	34053898	34053898	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	20	34053898	34053898	C	T	SNP	CEP250	ENST00000397527	human	ensembl	74_37	+1	known	nonsense	c.361	p.R121*	1.000	NULL	superfamily_Prefoldin	-	no_errors	CEP250	HGNC	ENSG00000126001				56	0	0	52	13	20
RBM12	0	genome.wustl.edu	37	20	34241967	34241967	+	Silent	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	20	34241967	34241967	A	G	SNP	RBM12	ENST00000359646	human	ensembl	74_37	-1	known	silent	c.1278	p.H426	0.999	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM12	HGNC	ENSG00000244462				72	0	0	60	32	34.7826
DLGAP4	0	genome.wustl.edu	37	20	35155495	35155495	+	RNA	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	20	35155495	35155495	C	T	SNP	DLGAP4	ENST00000475894	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.057	-	-	-	no_errors	DLGAP4	HGNC	ENSG00000080845				10	0	0	12	8	40
NDRG3	0	genome.wustl.edu	37	20	35317088	35317088	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	20	35317088	35317088	G	T	SNP	NDRG3	ENST00000349004	human	ensembl	74_37	-1	known	missense	c.193	p.L65I	1.000	pfam_Ndr	pfam_Ndr,pfam_AB_hydrolase_1	-	no_errors	NDRG3	HGNC	ENSG00000101079				72	0	0	51	18	26.087
ATRN	0	genome.wustl.edu	37	20	3565398	3565398	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	20	3565398	3565398	G	T	SNP	ATRN	ENST00000262919	human	ensembl	74_37	+1	known	missense	c.3055	p.G1019C	1.000	pfam_Plexin_repeat,superfamily_Plexin-like_fold,smart_Plexin-like_fold	pfam_Kelch_1,pfam_Plexin_repeat,pfam_CUB_dom,superfamily_C-type_lectin_fold,superfamily_CUB_dom,superfamily_Plexin-like_fold,smart_EG-like_dom,smart_CUB_dom,smart_Plexin-like_fold,smart_C-type_lectin,smart_EGF_laminin,pfscan_CUB_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_C-type_lectin	-	no_errors	ATRN	HGNC	ENSG00000088812				71	0	0	46	23	33.3333
RBL1	0	genome.wustl.edu	37	20	35663858	35663858	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	20	35663858	35663858	C	T	SNP	RBL1	ENST00000373664	human	ensembl	74_37	-1	known	missense	c.1957	p.A653T	1.000	NULL	pfam_RB_A,pfam_RB_B,pfam_RB_N,pfam_RB_C,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	RBL1	HGNC	ENSG00000080839				51	0	0	23	18	43.9024
RPN2	0	genome.wustl.edu	37	20	35835788	35835788	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	20	35835788	35835788	A	G	SNP	RPN2	ENST00000237530	human	ensembl	74_37	+1	known	missense	c.803	p.H268R	0.999	pfam_Swp1	pfam_Swp1	-	no_errors	RPN2	HGNC	ENSG00000118705				112	0	0	87	10	10.3093
SLC32A1	0	genome.wustl.edu	37	20	37357184	37357184	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	20	37357184	37357184	G	A	SNP	SLC32A1	ENST00000217420	human	ensembl	74_37	+1	known	missense	c.1480	p.V494I	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC32A1	HGNC	ENSG00000101438				18	0	0	19	7	26.9231
DHX35	0	genome.wustl.edu	37	20	37662959	37662959	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	20	37662959	37662959	C	T	SNP	DHX35	ENST00000252011	human	ensembl	74_37	+1	known	missense	c.2066	p.T689M	1.000	NULL	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX35	HGNC	ENSG00000101452				54	0	0	36	14	28
SMOX	0	genome.wustl.edu	37	20	4164164	4164164	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	20	4164164	4164164	C	T	SNP	SMOX	ENST00000305958	human	ensembl	74_37	+1	known	missense	c.1393	p.R465W	0.997	pfam_Amino_oxidase	pfam_Amino_oxidase,pfam_FAD-dep_OxRdtase,pfam_FAD_bind_dom	-	no_errors	SMOX	HGNC	ENSG00000088826				98	0	0	103	13	11.2069
HNF4A	0	genome.wustl.edu	37	20	43034816	43034816	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	20	43034816	43034816	C	T	SNP	HNF4A	ENST00000316099	human	ensembl	74_37	+1	known	silent	c.234	p.D78	0.995	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_COUP_TF,prints_Retinoid-X_rcpt/HNF4	-	no_errors	HNF4A	HGNC	ENSG00000101076				59	0	0	39	20	33.8983
MMP9	0	genome.wustl.edu	37	20	44641107	44641107	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	20	44641107	44641107	G	A	SNP	MMP9	ENST00000372330	human	ensembl	74_37	+1	known	missense	c.1216	p.A406T	1.000	pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo,prints_Pept_M10A	pfam_Pept_M10_metallopeptidase,pfam_FN_type2_col-bd,pfam_Hemopexin-like_repeat,pfam_PT,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Kringle-like,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_FN_type2_col-bd,smart_Hemopexin-like_repeat,pfscan_FN_type2_col-bd,prints_Pept_M10A	-	no_errors	MMP9	HGNC	ENSG00000100985				62	0	0	35	17	32.6923
SLC12A5	0	genome.wustl.edu	37	20	44685876	44685876	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	20	44685876	44685876	C	T	SNP	SLC12A5	ENST00000454036	human	ensembl	74_37	+1	known	missense	c.3262	p.R1088W	1.000	tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A5	HGNC	ENSG00000124140				85	0	0	57	37	39.3617
CDH22	0	genome.wustl.edu	37	20	44815281	44815281	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	20	44815281	44815281	G	A	SNP	CDH22	ENST00000372262	human	ensembl	74_37	-1	known	missense	c.1609	p.R537C	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,superfamily_MFS_dom_general_subst_transpt,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH22	HGNC	ENSG00000149654				57	0	0	41	13	24.0741
ARFGEF2	0	genome.wustl.edu	37	20	47605849	47605849	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	20	47605849	47605849	T	G	SNP	ARFGEF2	ENST00000371917	human	ensembl	74_37	+1	known	missense	c.2561	p.L854R	0.999	superfamily_ARM-type_fold	pfam_Sec7_dom,pfam_DUF1981_Sec7_assoc,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	-	no_errors	ARFGEF2	HGNC	ENSG00000124198				45	0	0	17	13	43.3333
ARFGEF2	0	genome.wustl.edu	37	20	47611069	47611069	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	20	47611069	47611069	C	T	SNP	ARFGEF2	ENST00000371917	human	ensembl	74_37	+1	known	missense	c.3055	p.R1019C	1.000	superfamily_ARM-type_fold	pfam_Sec7_dom,pfam_DUF1981_Sec7_assoc,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	-	no_errors	ARFGEF2	HGNC	ENSG00000124198				54	0	0	37	20	35.0877
SNAI1	0	genome.wustl.edu	37	20	48604589	48604589	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	20	48604589	48604589	G	A	SNP	SNAI1	ENST00000244050	human	ensembl	74_37	+1	known	missense	c.791	p.R264H	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SNAI1	HGNC	ENSG00000124216				43	0	0	16	12	42.8571
ADNP	0	genome.wustl.edu	37	20	49508895	49508895	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	20	49508895	49508895	T	G	SNP	ADNP	ENST00000349014	human	ensembl	74_37	-1	known	missense	c.2356	p.I786L	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ADNP	HGNC	ENSG00000101126				43	0	0	38	13	25.4902
NFATC2	0	genome.wustl.edu	37	20	50140064	50140064	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	20	50140064	50140064	G	A	SNP	NFATC2	ENST00000396009	human	ensembl	74_37	-1	known	missense	c.716	p.P239L	1.000	NULL	pfam_RHD,pfam_IPT,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT,pfscan_RHD,prints_NFAT	-	no_errors	NFATC2	HGNC	ENSG00000101096				49	0	0	28	9	24.3243
ZNF217	0	genome.wustl.edu	37	20	52193292	52193292	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	20	52193292	52193292	C	T	SNP	ZNF217	ENST00000302342	human	ensembl	74_37	-1	known	missense	c.2011	p.A671T	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF217	HGNC	ENSG00000171940				146	0	0	117	44	27.3292
NPEPL1	0	genome.wustl.edu	37	20	57269569	57269569	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	20	57269569	57269569	G	A	SNP	NPEPL1	ENST00000356091	human	ensembl	74_37	+1	known	missense	c.428	p.R143H	0.998	NULL	pfam_Peptidase_M17_C,prints_Leucine_aapep/pepB	-	no_errors	NPEPL1	HGNC	ENSG00000215440				39	0	0	23	15	39.4737
ZNF831	0	genome.wustl.edu	37	20	57768886	57768886	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	20	57768886	57768886	T	C	SNP	ZNF831	ENST00000371030	human	ensembl	74_37	+1	novel	missense	c.2812	p.S938P	0.018	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF831	HGNC	ENSG00000124203				75	0	0	52	29	35.8025
CDH26	0	genome.wustl.edu	37	20	58563985	58563985	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	20	58563985	58563985	G	A	SNP	CDH26	ENST00000244047	human	ensembl	74_37	+1	known	silent	c.1050	p.A350	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH26	HGNC	ENSG00000124215				46	0	0	26	10	27.7778
NTSR1	0	genome.wustl.edu	37	20	61391505	61391505	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	20	61391505	61391505	C	G	SNP	NTSR1	ENST00000370501	human	ensembl	74_37	+1	known	missense	c.1143	p.C381W	0.928	pfam_7TM_GPCR_serpentine_rcpt_Srv,prints_NT_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_NT1_rcpt,prints_GPCR_Rhodpsn,prints_NT_rcpt	-	no_errors	NTSR1	HGNC	ENSG00000101188				90	0	0	52	17	24.6377
YTHDF1	0	genome.wustl.edu	37	20	61834535	61834535	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	20	61834535	61834535	C	T	SNP	YTHDF1	ENST00000370339	human	ensembl	74_37	-1	known	missense	c.757	p.G253R	0.980	NULL	pfam_YTH_domain,pfscan_YTH_domain	-	no_errors	YTHDF1	HGNC	ENSG00000149658				72	0	0	51	22	30.137
KCNQ2	0	genome.wustl.edu	37	20	62070960	62070960	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	20	62070960	62070960	C	T	SNP	KCNQ2	ENST00000354587	human	ensembl	74_37	-1	known	silent	c.918	p.A306	0.995	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ankyrin-G_BS,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_KCNQ2,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ2	HGNC	ENSG00000075043				48	0	0	30	8	21.0526
SRMS	0	genome.wustl.edu	37	20	62178751	62178751	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	20	62178751	62178751	C	T	SNP	SRMS	ENST00000217188	human	ensembl	74_37	-1	known	silent	c.66	p.A22	0.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	SRMS	HGNC	ENSG00000125508				51	0	0	31	20	39.2157
HELZ2	0	genome.wustl.edu	37	20	62196899	62196899	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	20	62196899	62196899	G	A	SNP	HELZ2	ENST00000467148	human	ensembl	74_37	-1	known	silent	c.3276	p.D1092	0.649	NULL	superfamily_P-loop_NTPase	-	no_errors	HELZ2	HGNC	ENSG00000130589				20	0	0	18	9	33.3333
UCKL1	0	genome.wustl.edu	37	20	62577179	62577179	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	20	62577179	62577179	C	T	SNP	UCKL1	ENST00000354216	human	ensembl	74_37	-1	known	silent	c.561	p.T187	0.528	pfam_PRK/URK,superfamily_P-loop_NTPase,prints_Uridine_kinase,tigrfam_Uridine_kinase	pfam_PRK/URK,pfam_CPT,superfamily_P-loop_NTPase,prints_Uridine_kinase,prints_PRK,tigrfam_Uridine_kinase	-	no_errors	UCKL1	HGNC	ENSG00000198276				172	0	0	111	40	26.4901
ZNF512B	0	genome.wustl.edu	37	20	62598745	62598745	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	20	62598745	62598745	G	A	SNP	ZNF512B	ENST00000217130	human	ensembl	74_37	-1	known	nonsense	c.253	p.R85*	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF512B	HGNC	ENSG00000196700				89	0	0	53	28	34.5679
OPRL1	0	genome.wustl.edu	37	20	62729786	62729786	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	20	62729786	62729786	G	A	SNP	OPRL1	ENST00000336866	human	ensembl	74_37	+1	known	silent	c.747	p.S249	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Opioid_rcpt,prints_Neuropept_B/W_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_X_opioid_rcpt,prints_GPCR_Rhodpsn,prints_Opioid_rcpt,prints_Somatstn_rcpt,prints_Neuropept_B/W_rcpt,prints_NPY_rcpt	-	no_errors	OPRL1	HGNC	ENSG00000125510				66	0	0	48	21	30.4348
PLCB1	0	genome.wustl.edu	37	20	8862464	8862464	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	20	8862464	8862464	A	G	SNP	PLCB1	ENST00000338037	human	ensembl	74_37	+1	known	missense	c.3619	p.I1207V	0.986	NULL	pirsf_PLC-beta,pfam_PLC-beta_C,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,prints_Pinositol_PLipase_C,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB1	HGNC	ENSG00000182621				116	0	0	82	33	28.6957
NRIP1	0	genome.wustl.edu	37	21	16338141	16338141	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	21	16338141	16338141	G	A	SNP	NRIP1	ENST00000318948	human	ensembl	74_37	-1	known	silent	c.2373	p.S791	0.002	NULL	NULL	-	no_errors	NRIP1	HGNC	ENSG00000180530				39	0	0	16	18	52.9412
GRIK1	0	genome.wustl.edu	37	21	30949413	30949413	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	21	30949413	30949413	C	T	SNP	GRIK1	ENST00000535441	human	ensembl	74_37	-1	known	silent	c.2007	p.T669	0.997	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,prints_NMDA_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK1	HGNC	ENSG00000171189				92	0	0	83	43	34.127
KRTAP15-1	0	genome.wustl.edu	37	21	31812904	31812904	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	21	31812904	31812904	C	T	SNP	KRTAP15-1	ENST00000334067	human	ensembl	74_37	+1	known	missense	c.259	p.R87C	0.004	pfam_KRTAP_PMG	pfam_KRTAP_PMG	-	no_errors	KRTAP15-1	HGNC	ENSG00000186970				131	0	0	92	38	29.2308
TIAM1	0	genome.wustl.edu	37	21	32493037	32493037	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	21	32493037	32493037	G	A	SNP	TIAM1	ENST00000286827	human	ensembl	74_37	-1	known	silent	c.4425	p.P1475	0.845	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Raf-like_ras-bd,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM1	HGNC	ENSG00000156299				53	0	0	58	4	6.45161
GART	0	genome.wustl.edu	37	21	34903066	34903066	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	21	34903066	34903066	T	C	SNP	GART	ENST00000381815	human	ensembl	74_37	-1	known	missense	c.722	p.Q241R	1.000	pfam_PRibGlycinamid_synth_ATP-grasp,pfscan_ATP-grasp,tigrfam_PRibGlycinamide_synth	pfam_PRibGlycinamid_synth_ATP-grasp,pfam_Formyl_transf_N,pfam_PRibGlycinamide_synth_N,pfam_AIR_synth_C_dom,pfam_PRibGlycinamide_synth_C-dom,pfam_AIR_synth_N_dom,pfam_ATP-grasp_carboxylate-amine,pfam_CbamoylP_synth_lsu-like_ATP-bd,superfamily_Formyl_transf_N,superfamily_AIR_synth_C_dom,superfamily_PurM_N-like,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,pfscan_ATP-grasp,tigrfam_PRibGlycinamide_synth,tigrfam_PurM_cligase,tigrfam_PurN_trans	-	no_errors	GART	HGNC	ENSG00000159131				37	0	0	38	13	25.4902
TTC3	0	genome.wustl.edu	37	21	38498385	38498385	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	21	38498385	38498385	G	A	SNP	TTC3	ENST00000354749	human	ensembl	74_37	+1	known	silent	c.1239	p.A413	0.002	NULL	pfam_Znf_C3HC4_RING-type,superfamily_DEATH-like_dom,smart_TPR_repeat,smart_Znf_RING,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	TTC3	HGNC	ENSG00000182670				65	0	0	33	17	34
DSCR3	0	genome.wustl.edu	37	21	38600102	38600102	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	21	38600102	38600102	C	T	SNP	DSCR3	ENST00000309117	human	ensembl	74_37	-1	known	missense	c.664	p.A222T	1.000	pfam_VPS26	pfam_VPS26,pfam_Arrestin-like_N,superfamily_Ig_E-set	-	no_errors	DSCR3	HGNC	ENSG00000157538				20	0	0	29	6	17.1429
RIPK4	0	genome.wustl.edu	37	21	43161498	43161498	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	21	43161498	43161498	C	T	SNP	RIPK4	ENST00000352483	human	ensembl	74_37	-1	known	missense	c.1999	p.V667M	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	pfam_Ankyrin_rpt,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_dom,prints_Ankyrin_rpt,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RIPK4	HGNC	ENSG00000183421				64	0	0	44	12	21.4286
UMODL1	0	genome.wustl.edu	37	21	43531694	43531694	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	21	43531694	43531694	G	T	SNP	UMODL1	ENST00000408989	human	ensembl	74_37	+1	known	missense	c.2362	p.A788S	0.000	NULL	pfam_ZP_dom,pfam_SEA_dom,pfam_EGF-like_Ca-bd_dom,pfam_EMI_domain,pfam_WAP-type_4-diS_core,superfamily_Fibronectin_type3,superfamily_WAP-type_4-diS_core,smart_WAP-type_4-diS_core,smart_EGF-like_Ca-bd_dom,smart_Fibronectin_type3,smart_ZP_dom,pfscan_EG-like_dom,pfscan_EMI_domain,pfscan_Fibronectin_type3,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	UMODL1	HGNC	ENSG00000177398				45	0	0	24	9	27.2727
RRP1	0	genome.wustl.edu	37	21	45219516	45219516	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	21	45219516	45219516	G	A	SNP	RRP1	ENST00000497547	human	ensembl	74_37	+1	known	missense	c.877	p.G293S	0.002	NULL	pfam_Nop52	-	no_errors	RRP1	HGNC	ENSG00000160214				19	0	0	15	4	21.0526
PWP2	0	genome.wustl.edu	37	21	45535691	45535691	+	Silent	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	21	45535691	45535691	A	G	SNP	PWP2	ENST00000291576	human	ensembl	74_37	+1	known	silent	c.726	p.E242	0.035	superfamily_Quinonprotein_ADH-like_supfam	pfam_WD40_repeat,pfam_SSU_processome_Utp12,superfamily_Quinonprotein_ADH-like_supfam,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PWP2	HGNC	ENSG00000241945				41	0	0	24	13	35.1351
PFKL	0	genome.wustl.edu	37	21	45725142	45725142	+	RNA	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	21	45725142	45725142	G	A	SNP	PFKL	ENST00000491298	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PFKL	HGNC	ENSG00000141959				14	0	0	7	9	56.25
TRPM2	0	genome.wustl.edu	37	21	45798982	45798982	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	21	45798982	45798982	G	A	SNP	TRPM2	ENST00000300482	human	ensembl	74_37	+1	known	missense	c.1117	p.D373N	0.837	NULL	pfam_Ion_trans_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	TRPM2	HGNC	ENSG00000142185				57	0	0	42	26	38.2353
TRPM2	0	genome.wustl.edu	37	21	45825802	45825802	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	21	45825802	45825802	C	T	SNP	TRPM2	ENST00000300482	human	ensembl	74_37	+1	known	missense	c.2672	p.T891M	0.036	pfam_Ion_trans_dom	pfam_Ion_trans_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	TRPM2	HGNC	ENSG00000142185				55	0	0	39	18	31.5789
LRRC3	0	genome.wustl.edu	37	21	45876853	45876853	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	21	45876853	45876853	C	T	SNP	LRRC3	ENST00000291592	human	ensembl	74_37	+1	known	missense	c.326	p.A109V	0.003	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC3	HGNC	ENSG00000160233				25	0	0	28	4	12.5
ADARB1	0	genome.wustl.edu	37	21	46596311	46596311	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	21	46596311	46596311	G	T	SNP	ADARB1	ENST00000360697	human	ensembl	74_37	+1	known	missense	c.695	p.S232I	0.999	NULL	pfam_A_deamin,pfam_dsRNA-bd_dom,superfamily_Cytokine_IL1-like,smart_dsRNA-bd_dom,smart_A_deamin,pfscan_dsRNA-bd_dom,pfscan_A_deamin	-	no_errors	ADARB1	HGNC	ENSG00000197381				69	0	0	41	24	36.9231
CCT8L2	0	genome.wustl.edu	37	22	17072267	17072267	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	22	17072267	17072267	C	T	SNP	CCT8L2	ENST00000359963	human	ensembl	74_37	-1	known	missense	c.1174	p.V392I	0.917	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,prints_Chaperone_TCP-1	-	no_errors	CCT8L2	HGNC	ENSG00000198445				43	0	0	39	20	33.8983
CCT8L2	0	genome.wustl.edu	37	22	17072678	17072678	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	22	17072678	17072678	C	A	SNP	CCT8L2	ENST00000359963	human	ensembl	74_37	-1	known	missense	c.763	p.A255S	0.004	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,prints_Chaperone_TCP-1	-	no_errors	CCT8L2	HGNC	ENSG00000198445				68	0	0	54	25	31.6456
DGCR2	0	genome.wustl.edu	37	22	19055664	19055664	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	22	19055664	19055664	C	T	SNP	DGCR2	ENST00000263196	human	ensembl	74_37	-1	known	missense	c.277	p.D93N	0.997	NULL	pfam_LDrepeatLR_classA_rpt,superfamily_C-type_lectin_fold,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_C-type_lectin,smart_VWF_C,pfscan_LDrepeatLR_classA_rpt,pfscan_C-type_lectin	-	no_errors	DGCR2	HGNC	ENSG00000070413				23	0	0	16	9	36
HIRA	0	genome.wustl.edu	37	22	19379688	19379688	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	22	19379688	19379688	G	A	SNP	HIRA	ENST00000263208	human	ensembl	74_37	-1	known	missense	c.872	p.A291V	0.899	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_Hira,pfam_WD40_repeat,pfam_HIRA_B_motif,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	HIRA	HGNC	ENSG00000100084				32	0	0	34	13	27.6596
TXNRD2	0	genome.wustl.edu	37	22	19882652	19882652	+	RNA	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	22	19882652	19882652	C	T	SNP	TXNRD2	ENST00000491939	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TXNRD2	HGNC	ENSG00000184470				29	0	0	14	7	33.3333
KLHL22	0	genome.wustl.edu	37	22	20819360	20819360	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	22	20819360	20819360	G	A	SNP	KLHL22	ENST00000328879	human	ensembl	74_37	-1	known	silent	c.897	p.C299	0.516	smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_Kelch_2,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL22	HGNC	ENSG00000099910				52	0	0	26	13	33.3333
LZTR1	0	genome.wustl.edu	37	22	21351217	21351217	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	22	21351217	21351217	C	T	SNP	LZTR1	ENST00000215739	human	ensembl	74_37	+1	known	missense	c.2368	p.R790W	1.000	superfamily_BTB/POZ_fold	pfam_Kelch_1,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_Kelch_1,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	LZTR1	HGNC	ENSG00000099949				40	0	0	44	12	21.4286
GGTLC2	0	genome.wustl.edu	37	22	22989563	22989563	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	22	22989563	22989563	C	T	SNP	GGTLC2	ENST00000448514	human	ensembl	74_37	+1	known	silent	c.415	p.L139	1.000	pfam_GGT_peptidase,prints_GGT_peptidase	pfam_GGT_peptidase,prints_GGT_peptidase	-	no_errors	GGTLC2	HGNC	ENSG00000100121				70	0	0	49	21	30
POM121L9P	0	genome.wustl.edu	37	22	24659690	24659690	+	RNA	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	22	24659690	24659690	C	T	SNP	POM121L9P	ENST00000414583	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.896	-	-	-	no_errors	POM121L9P	HGNC	ENSG00000128262				25	0	0	19	5	20.8333
PIWIL3	0	genome.wustl.edu	37	22	25145382	25145382	+	Silent	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	22	25145382	25145382	A	G	SNP	PIWIL3	ENST00000332271	human	ensembl	74_37	-1	known	silent	c.1323	p.N441	0.000	superfamily_RNaseH-like_dom,superfamily_PAZ_dom	pfam_Piwi,pfam_PAZ_dom,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	PIWIL3	HGNC	ENSG00000184571				114	0	0	82	37	31.0924
HPS4	0	genome.wustl.edu	37	22	26861510	26861510	+	Silent	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	22	26861510	26861510	T	C	SNP	HPS4	ENST00000398141	human	ensembl	74_37	-1	known	silent	c.753	p.A251	0.000	NULL	NULL	-	no_errors	HPS4	HGNC	ENSG00000100099				66	0	0	71	8	10.1266
HPS4	0	genome.wustl.edu	37	22	26868359	26868359	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	22	26868359	26868359	G	A	SNP	HPS4	ENST00000398141	human	ensembl	74_37	-1	known	missense	c.395	p.T132M	0.000	NULL	NULL	-	no_errors	HPS4	HGNC	ENSG00000100099				109	0	0	70	44	38.5965
CRYBB1	0	genome.wustl.edu	37	22	27012211	27012211	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	22	27012211	27012211	C	A	SNP	CRYBB1	ENST00000215939	human	ensembl	74_37	-1	known	missense	c.73	p.G25W	0.890	NULL	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYBB1	HGNC	ENSG00000100122				41	0	0	46	19	29.2308
AP1B1	0	genome.wustl.edu	37	22	29755831	29755831	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	22	29755831	29755831	G	A	SNP	AP1B1	ENST00000357586	human	ensembl	74_37	-1	known	silent	c.261	p.A87	0.180	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP_complex_bsu_1_2_4	pfam_Clathrin/coatomer_adapt-like_N,pfam_B-adaptin_app_sub_C,pfam_HEAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Armadillo,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP_complex_bsu_1_2_4	-	no_errors	AP1B1	HGNC	ENSG00000100280				99	0	0	56	21	27.2727
MYH9	0	genome.wustl.edu	37	22	36702620	36702620	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	22	36702620	36702620	C	T	SNP	MYH9	ENST00000216181	human	ensembl	74_37	-1	known	missense	c.1877	p.G626D	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH9	HGNC	ENSG00000100345				30	0	0	30	3	9.09091
MYH9	0	genome.wustl.edu	37	22	36708256	36708256	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	22	36708256	36708256	C	T	SNP	MYH9	ENST00000216181	human	ensembl	74_37	-1	known	silent	c.1566	p.P522	0.006	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH9	HGNC	ENSG00000100345				30	0	0	36	17	32.0755
PLA2G6	0	genome.wustl.edu	37	22	38525530	38525530	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	22	38525530	38525530	C	T	SNP	PLA2G6	ENST00000332509	human	ensembl	74_37	-1	known	missense	c.1117	p.G373R	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Patatin/PLipase_A2-rel,superfamily_Ankyrin_rpt-contain_dom,superfamily_Acyl_Trfase/lysoPLipase,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	PLA2G6	HGNC	ENSG00000184381				73	0	0	59	31	34.4444
KCNJ4	0	genome.wustl.edu	37	22	38823343	38823343	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	22	38823343	38823343	G	A	SNP	KCNJ4	ENST00000303592	human	ensembl	74_37	-1	known	silent	c.795	p.I265	0.940	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir2.3	-	no_errors	KCNJ4	HGNC	ENSG00000168135				45	0	0	40	15	27.2727
SUN2	0	genome.wustl.edu	37	22	39147378	39147378	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	22	39147378	39147378	C	A	SNP	SUN2	ENST00000216064	human	ensembl	74_37	-1	known	missense	c.123	p.R41S	1.000	NULL	pfam_Sad1_UNC_C,superfamily_Galactose-bd-like	-	no_errors	SUN2	HGNC	ENSG00000100242				36	0	0	31	2	6.06061
TAB1	0	genome.wustl.edu	37	22	39826041	39826041	+	Silent	SNP	G	G	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	22	39826041	39826041	G	T	SNP	TAB1	ENST00000216160	human	ensembl	74_37	+1	known	silent	c.1329	p.L443	1.000	NULL	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	-	no_errors	TAB1	HGNC	ENSG00000100324				78	0	0	49	27	35.5263
CACNA1I	0	genome.wustl.edu	37	22	40075136	40075136	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	22	40075136	40075136	G	A	SNP	CACNA1I	ENST00000336649	human	ensembl	74_37	+1	known	missense	c.5098	p.D1700N	0.833	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1I	HGNC	ENSG00000100346				13	0	0	5	7	58.3333
EP300	0	genome.wustl.edu	37	22	41564766	41564766	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	22	41564766	41564766	G	A	SNP	EP300	ENST00000263253	human	ensembl	74_37	+1	known	missense	c.4067	p.R1356Q	1.000	pfam_Histone_H3-K56_AcTrfase_RTT109	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	EP300	HGNC	ENSG00000100393				72	0	0	62	16	20.5128
RANGAP1	0	genome.wustl.edu	37	22	41652106	41652106	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	22	41652106	41652106	T	C	SNP	RANGAP1	ENST00000356244	human	ensembl	74_37	-1	known	missense	c.992	p.N331S	1.000	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_Ran_GTPase_activating_1_C,superfamily_Ran_GTPase_activating_1_C,smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	RANGAP1	HGNC	ENSG00000100401				37	0	0	28	16	36.3636
A4GALT	0	genome.wustl.edu	37	22	43089153	43089153	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	22	43089153	43089153	C	T	SNP	A4GALT	ENST00000249005	human	ensembl	74_37	-1	known	missense	c.805	p.E269K	0.001	pfam_A1-4-GlycosylTfrase_dom	pfam_A1-4-GlycosylTfrase_dom,pfam_GlycoTrfase_DXD_sugar-bd_CS	-	no_errors	A4GALT	HGNC	ENSG00000128274				9	0	0	1	8	88.8889
SCUBE1	0	genome.wustl.edu	37	22	43604220	43604220	+	Silent	SNP	C	C	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	22	43604220	43604220	C	A	SNP	SCUBE1	ENST00000360835	human	ensembl	74_37	-1	known	silent	c.2592	p.T864	0.001	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_EGF-like_Ca-bd_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_EG-like_dom,pfam_CUB_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	SCUBE1	HGNC	ENSG00000159307				64	0	0	37	25	40.3226
FBLN1	0	genome.wustl.edu	37	22	45972965	45972965	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	22	45972965	45972965	G	A	SNP	FBLN1	ENST00000327858	human	ensembl	74_37	+1	known	missense	c.1949	p.R650H	1.000	pirsf_Fibulin-1	pfam_EGF-like_Ca-bd_dom,pfam_Anaphylatoxin/fibulin,smart_Anaphylatoxin/fibulin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_Fibulin-1,pfscan_Anaphylatoxin/fibulin,pfscan_EG-like_dom	-	no_errors	FBLN1	HGNC	ENSG00000077942				56	0	0	43	21	32.8125
CDPF1	0	genome.wustl.edu	37	22	46643046	46643046	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	22	46643046	46643046	C	T	SNP	CDPF1	ENST00000381037	human	ensembl	74_37	-1	known	silent	c.186	p.S62	0.000	pfam_Cys-rich_DPF,prints_Cys-rich_DPF	pfam_Cys-rich_DPF,prints_Cys-rich_DPF	-	no_errors	CDPF1	HGNC	ENSG00000205643				25	0	0	16	9	36
GRAMD4	0	genome.wustl.edu	37	22	47064782	47064782	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	22	47064782	47064782	A	T	SNP	GRAMD4	ENST00000361034	human	ensembl	74_37	+1	known	missense	c.1061	p.Y354F	1.000	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD4	HGNC	ENSG00000075240				46	0	0	32	20	38.4615
TUBGCP6	0	genome.wustl.edu	37	22	50663014	50663014	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	22	50663014	50663014	C	T	SNP	TUBGCP6	ENST00000248846	human	ensembl	74_37	-1	known	missense	c.1991	p.R664H	0.949	pfam_TUBGCP	pfam_TUBGCP	-	no_errors	TUBGCP6	HGNC	ENSG00000128159				48	0	0	31	22	41.5094
PLXNB2	0	genome.wustl.edu	37	22	50716155	50716155	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	22	50716155	50716155	C	T	SNP	PLXNB2	ENST00000359337	human	ensembl	74_37	-1	known	silent	c.5061	p.R1687	0.825	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNB2	HGNC	ENSG00000196576				105	0	0	62	26	29.5455
PLXNB2	0	genome.wustl.edu	37	22	50728968	50728968	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	22	50728968	50728968	C	T	SNP	PLXNB2	ENST00000359337	human	ensembl	74_37	-1	known	missense	c.46	p.A16T	0.000	pfscan_Semap_dom	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNB2	HGNC	ENSG00000196576				17	0	0	12	7	36.8421
SCO2	0	genome.wustl.edu	37	22	50962178	50962178	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	22	50962178	50962178	G	A	SNP	SCO2	ENST00000252785	human	ensembl	74_37	-1	known	silent	c.663	p.I221	0.597	pfam_SCO1/SenC,superfamily_Thioredoxin-like_fold,pirsf_Synth_of_cyt-c-oxidase_Sco1/2	pfam_SCO1/SenC,superfamily_Thioredoxin-like_fold,pirsf_Synth_of_cyt-c-oxidase_Sco1/2	-	no_errors	SCO2	HGNC	ENSG00000130489				138	0	0	111	54	32.7273
SHANK3	0	genome.wustl.edu	37	22	51160465	51160465	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	22	51160465	51160465	G	A	SNP	SHANK3	ENST00000262795	human	ensembl	74_37	+1	known	missense	c.4252	p.G1418R	1.000	NULL	pfam_SAM_type1,pfam_Ankyrin_rpt,pfam_SAM_2,pfam_SH3_2,pfam_PDZ,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK3	HGNC	ENSG00000251322				19	0	0	18	9	33.3333
DPPA4	0	genome.wustl.edu	37	3	109050737	109050737	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	109050737	109050737	T	C	SNP	DPPA4	ENST00000335658	human	ensembl	74_37	-1	known	missense	c.320	p.K107R	0.000	NULL	NULL	-	no_errors	DPPA4	HGNC	ENSG00000121570				76	0	0	87	7	7.44681
GSK3B	0	genome.wustl.edu	37	3	119631658	119631658	+	Splice_Site	SNP	C	C	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	119631658	119631658	C	G	SNP	GSK3B	ENST00000316626	human	ensembl	74_37	-1	known	splice_site	c.609-1	e6-1	1.000	-	-	-	no_errors	GSK3B	HGNC	ENSG00000082701				29	0	0	24	15	38.4615
POLQ	0	genome.wustl.edu	37	3	121230875	121230875	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	121230875	121230875	G	A	SNP	POLQ	ENST00000264233	human	ensembl	74_37	-1	known	silent	c.1470	p.G490	1.000	superfamily_P-loop_NTPase,pfscan_Helicase_C	pfam_DNA-dir_DNA_pol_A_palm_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_RNaseH-like_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_DNA-dir_DNA_pol_A_palm_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_DNA_polymerase_A	-	no_errors	POLQ	HGNC	ENSG00000051341				47	0	0	44	23	34.3284
ADCY5	0	genome.wustl.edu	37	3	123051470	123051470	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	123051470	123051470	C	T	SNP	ADCY5	ENST00000462833	human	ensembl	74_37	-1	known	missense	c.1459	p.A487T	1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY5	HGNC	ENSG00000173175				35	0	0	30	11	26.8293
MYLK	0	genome.wustl.edu	37	3	123427553	123427553	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	123427553	123427553	G	A	SNP	MYLK	ENST00000360304	human	ensembl	74_37	-1	known	missense	c.2132	p.T711M	0.976	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	MYLK	HGNC	ENSG00000065534				56	0	0	27	14	34.1463
ITGB5	0	genome.wustl.edu	37	3	124485139	124485139	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	124485139	124485139	C	T	SNP	ITGB5	ENST00000296181	human	ensembl	74_37	-1	known	missense	c.2071	p.V691I	1.000	pirsf_Integrin_bsu,pfam_Integrin_bsu_tail,superfamily_Integrin_bsu_tail	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_cyt_dom,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,smart_VWF_A,prints_Integrin_bsu	-	no_errors	ITGB5	HGNC	ENSG00000082781				59	0	0	58	41	41.4141
KLF15	0	genome.wustl.edu	37	3	126062587	126062587	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	126062587	126062587	C	T	SNP	KLF15	ENST00000296233	human	ensembl	74_37	-1	known	missense	c.1234	p.V412M	0.256	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF15	HGNC	ENSG00000163884				32	0	0	25	4	13.7931
XRN1	0	genome.wustl.edu	37	3	142122802	142122802	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	142122802	142122802	C	T	SNP	XRN1	ENST00000264951	human	ensembl	74_37	-1	known	missense	c.1913	p.R638H	0.997	pirsf_5_3_exoribonuclease_1	pfam_Put_53exo,pirsf_5_3_exoribonuclease_1	-	no_errors	XRN1	HGNC	ENSG00000114127				38	0	0	35	13	27.0833
PAQR9	0	genome.wustl.edu	37	3	142681763	142681763	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	142681763	142681763	G	A	SNP	PAQR9	ENST00000340634	human	ensembl	74_37	-1	known	missense	c.416	p.A139V	1.000	pfam_HlyIII-related	pfam_HlyIII-related	-	no_errors	PAQR9	HGNC	ENSG00000188582				33	0	0	17	12	41.3793
PLSCR1	0	genome.wustl.edu	37	3	146254325	146254325	+	Splice_Site	SNP	A	A	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	146254325	146254325	A	C	SNP	PLSCR1	ENST00000342435	human	ensembl	74_37	-1	known	splice_site	c.13+2	e1+2	0.993	-	-	-	no_errors	PLSCR1	HGNC	ENSG00000188313				54	0	0	44	3	6.38298
AADACL2	0	genome.wustl.edu	37	3	151458608	151458608	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	151458608	151458608	C	T	SNP	AADACL2	ENST00000356517	human	ensembl	74_37	+1	known	nonsense	c.313	p.R105*	0.016	pfam_CarbesteraseB,pfam_Steryl_acetyl_hydrolase,pirsf_Arylacetamide_deacetylase	pfam_AB_hydrolase_3,pfam_CarbesteraseB,pfam_Steryl_acetyl_hydrolase,pirsf_Arylacetamide_deacetylase	-	no_errors	AADACL2	HGNC	ENSG00000197953				78	0	0	56	23	29.1139
DHX36	0	genome.wustl.edu	37	3	154007599	154007599	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	154007599	154007599	A	T	SNP	DHX36	ENST00000496811	human	ensembl	74_37	-1	known	missense	c.1831	p.C611S	1.000	superfamily_P-loop_NTPase,pfscan_Helicase_C	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX36	HGNC	ENSG00000174953				33	0	0	35	11	23.913
PLCH1	0	genome.wustl.edu	37	3	155301426	155301426	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	155301426	155301426	G	A	SNP	PLCH1	ENST00000340059	human	ensembl	74_37	-1	known	silent	c.570	p.A190	0.008	smart_EF_hand_dom,pfscan_EF_hand_dom	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_EF_hand_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_EF_hand_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCH1	HGNC	ENSG00000114805				47	0	0	39	22	36.0656
RARRES1	0	genome.wustl.edu	37	3	158428614	158428614	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	158428614	158428614	C	T	SNP	RARRES1	ENST00000237696	human	ensembl	74_37	-1	known	missense	c.448	p.E150K	0.004	pfam_Prot_inh_latexin,pirsf_Prot_inh_latexin	pfam_Prot_inh_latexin,pirsf_Prot_inh_latexin	-	no_errors	RARRES1	HGNC	ENSG00000118849				89	0	0	86	29	25.2174
IL12A-AS1	0	genome.wustl.edu	37	3	159706993	159706993	+	RNA	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	159706993	159706993	G	A	SNP	IL12A-AS1	ENST00000497452	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	IL12A-AS1	HGNC	ENSG00000244040				13	0	0	7	6	46.1538
RFTN1	0	genome.wustl.edu	37	3	16358730	16358730	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	16358730	16358730	G	A	SNP	RFTN1	ENST00000334133	human	ensembl	74_37	-1	known	nonsense	c.1342	p.R448*	1.000	NULL	NULL	-	no_errors	RFTN1	HGNC	ENSG00000131378				53	0	0	39	13	25
ZBBX	0	genome.wustl.edu	37	3	167077712	167077712	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	167077712	167077712	T	G	SNP	ZBBX	ENST00000307529	human	ensembl	74_37	-1	known	missense	c.378	p.K126N	0.119	NULL	pfam_Znf_B-box	-	no_errors	ZBBX	HGNC	ENSG00000169064				34	0	0	41	19	31.6667
SLC7A14	0	genome.wustl.edu	37	3	170204127	170204127	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	170204127	170204127	C	T	SNP	SLC7A14	ENST00000231706	human	ensembl	74_37	-1	known	missense	c.790	p.A264T	1.000	pfam_AA-permease/SLC12A_dom	pfam_AA-permease/SLC12A_dom	-	no_errors	SLC7A14	HGNC	ENSG00000013293				66	0	0	51	28	35.443
SLC7A14	0	genome.wustl.edu	37	3	170218991	170218991	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	170218991	170218991	C	T	SNP	SLC7A14	ENST00000231706	human	ensembl	74_37	-1	known	missense	c.448	p.G150R	0.997	pfam_AA-permease/SLC12A_dom	pfam_AA-permease/SLC12A_dom	-	no_errors	SLC7A14	HGNC	ENSG00000013293				31	0	0	26	9	25.7143
PLCL2	0	genome.wustl.edu	37	3	17051544	17051544	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	17051544	17051544	G	A	SNP	PLCL2	ENST00000418129	human	ensembl	74_37	+1	known	missense	c.328	p.A110T	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCL2	HGNC	ENSG00000154822				123	0	0	114	66	36.6667
MCCC1	0	genome.wustl.edu	37	3	182743546	182743546	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	182743546	182743546	C	T	SNP	MCCC1	ENST00000265594	human	ensembl	74_37	-1	known	missense	c.1728	p.M576I	1.000	NULL	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_carboxylate-amine,pfam_ATP-grasp_RimK-type,pfam_ATP-grasp_DUF201-type,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_Biotin_lipoyl	-	no_errors	MCCC1	HGNC	ENSG00000078070				55	0	0	54	25	31.6456
AP2M1	0	genome.wustl.edu	37	3	183896808	183896808	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	183896808	183896808	G	A	SNP	AP2M1	ENST00000292807	human	ensembl	74_37	+1	known	missense	c.238	p.E80K	1.000	pfam_AP_mu_sigma_su,superfamily_Longin-like_dom,pirsf_Clathrin_mu	pfam_Clathrin_mu_C,pfam_AP_mu_sigma_su,superfamily_Clathrin_mu_C,superfamily_Longin-like_dom,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C,prints_Clathrin_mu	-	no_errors	AP2M1	HGNC	ENSG00000161203				111	0	0	81	32	28.3186
THPO	0	genome.wustl.edu	37	3	184090371	184090371	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	184090371	184090371	G	A	SNP	THPO	ENST00000204615	human	ensembl	74_37	-1	known	missense	c.992	p.T331M	0.000	NULL	pfam_EPO_TPO,superfamily_4_helix_cytokine-like_core,prints_Thrombopoeitin	-	no_errors	THPO	HGNC	ENSG00000090534				90	0	0	63	35	35.7143
IGF2BP2	0	genome.wustl.edu	37	3	185375140	185375140	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	185375140	185375140	G	A	SNP	IGF2BP2	ENST00000382199	human	ensembl	74_37	-1	known	silent	c.1320	p.G440	0.052	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,pfam_RRM_dom,smart_RRM_dom,smart_KH_dom,pfscan_KH_dom_type_1,pfscan_RRM_dom	-	no_errors	IGF2BP2	HGNC	ENSG00000073792				46	0	0	33	22	40
HRG	0	genome.wustl.edu	37	3	186395437	186395437	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	186395437	186395437	G	A	SNP	HRG	ENST00000232003	human	ensembl	74_37	+1	known	missense	c.1343	p.R448H	0.103	NULL	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	HRG	HGNC	ENSG00000113905				68	0	0	52	22	29.7297
LPP	0	genome.wustl.edu	37	3	188123957	188123957	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	188123957	188123957	G	A	SNP	LPP	ENST00000312675	human	ensembl	74_37	+1	known	missense	c.49	p.G17S	1.000	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LPP	HGNC	ENSG00000145012				229	0	0	153	68	30.7692
GP5	0	genome.wustl.edu	37	3	194118379	194118379	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	194118379	194118379	C	T	SNP	GP5	ENST00000323007	human	ensembl	74_37	-1	known	silent	c.633	p.S211	0.012	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	GP5	HGNC	ENSG00000178732				99	0	0	63	39	38.2353
TNK2	0	genome.wustl.edu	37	3	195594978	195594978	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	195594978	195594978	T	C	SNP	TNK2	ENST00000381916	human	ensembl	74_37	-1	known	missense	c.2380	p.R794G	0.993	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Cdc42_binding_dom_like,pfam_Inhibitor_Mig-6,superfamily_Kinase-like_dom,superfamily_SH3_domain,superfamily_SAM/pointed,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SH3_domain,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_SH3_domain,pfscan_Prot_kinase_dom	-	no_errors	TNK2	HGNC	ENSG00000061938				14	0	0	12	5	29.4118
RAB5A	0	genome.wustl.edu	37	3	20025266	20025266	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	20025266	20025266	A	G	SNP	RAB5A	ENST00000273047	human	ensembl	74_37	+1	known	missense	c.599	p.D200G	1.000	superfamily_P-loop_NTPase,smart_Ran_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB5A	HGNC	ENSG00000144566				45	0	0	64	4	5.88235
KAT2B	0	genome.wustl.edu	37	3	20153198	20153198	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	20153198	20153198	G	A	SNP	KAT2B	ENST00000263754	human	ensembl	74_37	+1	known	missense	c.962	p.R321Q	0.914	pirsf_Hist_acetylase_PCAF,pfam_PCAF_N	pirsf_Hist_acetylase_PCAF,pfam_PCAF_N,pfam_Bromodomain,pfam_GNAT_dom,superfamily_Bromodomain,superfamily_Acyl_CoA_acyltransferase,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain,pfscan_GNAT_dom	-	no_errors	KAT2B	HGNC	ENSG00000114166				106	0	0	73	36	33.0275
SGOL1	0	genome.wustl.edu	37	3	20225413	20225413	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	20225413	20225413	C	T	SNP	SGOL1	ENST00000263753	human	ensembl	74_37	-1	known	missense	c.107	p.R36H	0.483	pfam_Shugoshin_N	pfam_Shugoshin_N,pfam_Shugoshin_C	-	no_errors	SGOL1	HGNC	ENSG00000129810				54	0	0	58	26	30.9524
PDCD6IP	0	genome.wustl.edu	37	3	33877588	33877588	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	33877588	33877588	A	T	SNP	PDCD6IP	ENST00000457054	human	ensembl	74_37	+1	known	missense	c.902	p.N301I	0.998	pfam_BRO1_dom,pfscan_BRO1_dom	pfam_BRO1_dom,pfscan_BRO1_dom	-	no_errors	PDCD6IP	HGNC	ENSG00000170248				99	0	0	85	48	36.0902
LRRFIP2	0	genome.wustl.edu	37	3	37170567	37170567	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	37170567	37170567	C	T	SNP	LRRFIP2	ENST00000336686	human	ensembl	74_37	-1	known	missense	c.164	p.R55Q	1.000	pfam_Leu-rich_rep_flightless-int_pr	pfam_Leu-rich_rep_flightless-int_pr,superfamily_bHLH_dom,superfamily_Prefoldin	-	no_errors	LRRFIP2	HGNC	ENSG00000093167				87	0	0	57	29	33.7209
XYLB	0	genome.wustl.edu	37	3	38414150	38414150	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	38414150	38414150	C	T	SNP	XYLB	ENST00000207870	human	ensembl	74_37	+1	known	missense	c.770	p.A257V	0.530	pfam_Carb_kinase_FGGY_N	pfam_Carb_kinase_FGGY_C,pfam_Carb_kinase_FGGY_N	-	no_errors	XYLB	HGNC	ENSG00000093217				49	0	0	53	10	15.873
RPSA	0	genome.wustl.edu	37	3	39453213	39453213	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	39453213	39453213	G	A	SNP	RPSA	ENST00000301821	human	ensembl	74_37	+1	known	missense	c.572	p.R191H	1.000	superfamily_Ribosomal_S2_flav_dom,tigrfam_Ribosomal_S2_euk/arc	pfam_Ribosomal_S2,superfamily_Ribosomal_S2_flav_dom,prints_Ribosomal_S2,tigrfam_Ribosomal_S2_euk/arc	-	no_errors	RPSA	HGNC	ENSG00000168028				42	0	0	39	4	9.30233
ZKSCAN7	0	genome.wustl.edu	37	3	44612793	44612793	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	44612793	44612793	C	T	SNP	ZKSCAN7	ENST00000273320	human	ensembl	74_37	+1	known	missense	c.2191	p.R731C	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZKSCAN7	HGNC	ENSG00000196345				74	0	0	74	35	32.1101
PTH1R	0	genome.wustl.edu	37	3	46943318	46943318	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	46943318	46943318	C	T	SNP	PTH1R	ENST00000313049	human	ensembl	74_37	+1	known	silent	c.1179	p.N393	0.981	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_parathyroid_rcpt	-	no_errors	PTH1R	HGNC	ENSG00000160801				38	0	0	19	5	20.8333
ARIH2	0	genome.wustl.edu	37	3	49004710	49004710	+	Splice_Site	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	49004710	49004710	T	C	SNP	ARIH2	ENST00000356401	human	ensembl	74_37	+1	known	splice_site	c.538+2	e4+2	1.000	-	-	-	no_errors	ARIH2	HGNC	ENSG00000177479				62	0	0	36	22	37.931
LAMB2	0	genome.wustl.edu	37	3	49159606	49159606	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	49159606	49159606	G	A	SNP	LAMB2	ENST00000305544	human	ensembl	74_37	-1	known	missense	c.4771	p.R1591W	1.000	NULL	pfam_EGF_laminin,pfam_Laminin_N,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB2	HGNC	ENSG00000172037				52	0	0	33	9	21.4286
AMIGO3	0	genome.wustl.edu	37	3	49756307	49756307	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	49756307	49756307	T	C	SNP	AMIGO3	ENST00000320431	human	ensembl	74_37	-1	known	missense	c.592	p.I198V	0.057	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	AMIGO3	HGNC	ENSG00000176020				52	0	0	25	12	32.4324
CAMKV	0	genome.wustl.edu	37	3	49897038	49897038	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	49897038	49897038	C	T	SNP	CAMKV	ENST00000477224	human	ensembl	74_37	-1	known	missense	c.1219	p.D407N	0.993	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CAMKV	HGNC	ENSG00000164076				101	0	0	70	33	32.0388
RBM6	0	genome.wustl.edu	37	3	50099537	50099537	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	50099537	50099537	C	T	SNP	RBM6	ENST00000266022	human	ensembl	74_37	+1	known	missense	c.2582	p.T861M	0.031	NULL	pfam_G_patch_dom,smart_RRM_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_RRM_dom	-	no_errors	RBM6	HGNC	ENSG00000004534				75	0	0	66	27	29.0323
SEMA3F	0	genome.wustl.edu	37	3	50211341	50211341	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	50211341	50211341	C	T	SNP	SEMA3F	ENST00000002829	human	ensembl	74_37	+1	known	silent	c.228	p.Y76	1.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Ig_sub,smart_Ig_sub2,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA3F	HGNC	ENSG00000001617				52	0	0	35	22	38.5965
RASSF1	0	genome.wustl.edu	37	3	50369011	50369011	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	50369011	50369011	G	A	SNP	RASSF1	ENST00000357043	human	ensembl	74_37	-1	known	missense	c.751	p.R251C	1.000	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc	pfam_Ras-assoc,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SARAH_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	RASSF1	HGNC	ENSG00000068028				83	0	0	60	28	31.8182
NISCH	0	genome.wustl.edu	37	3	52522196	52522196	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	52522196	52522196	G	A	SNP	NISCH	ENST00000345716	human	ensembl	74_37	+1	known	silent	c.2688	p.A896	0.000	NULL	pfam_Phox,pfam_Leu-rich_rpt,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	NISCH	HGNC	ENSG00000010322				38	0	0	23	15	39.4737
STAB1	0	genome.wustl.edu	37	3	52557277	52557277	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	52557277	52557277	G	A	SNP	STAB1	ENST00000321725	human	ensembl	74_37	+1	known	missense	c.7060	p.D2354N	0.982	superfamily_FAS1_domain,pfscan_FAS1_domain	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,smart_EG-like_dom,smart_EGF_laminin,smart_FAS1_domain,smart_EGF-like_Ca-bd_dom,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB1	HGNC	ENSG00000010327				81	0	0	73	22	23.1579
PBRM1	0	genome.wustl.edu	37	3	52595936	52595936	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	52595936	52595936	G	A	SNP	PBRM1	ENST00000296302	human	ensembl	74_37	-1	known	missense	c.4135	p.R1379W	0.991	superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	pfam_Bromodomain,pfam_BAH_dom,pfam_HMG_box_dom,superfamily_Bromodomain,superfamily_HMG_box_dom,smart_Bromodomain,smart_BAH_dom,smart_HMG_box_dom,pfscan_BAH_dom,pfscan_HMG_box_dom,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	PBRM1	HGNC	ENSG00000163939				116	0	0	94	9	8.73786
SFMBT1	0	genome.wustl.edu	37	3	52941285	52941285	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	52941285	52941285	C	A	SNP	SFMBT1	ENST00000358080	human	ensembl	74_37	-1	known	missense	c.2131	p.D711Y	1.000	NULL	pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt	-	no_errors	SFMBT1	HGNC	ENSG00000163935				79	0	0	67	21	23.8636
CADPS	0	genome.wustl.edu	37	3	62477973	62477973	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	62477973	62477973	C	T	SNP	CADPS	ENST00000383710	human	ensembl	74_37	-1	known	missense	c.2876	p.R959H	1.000	NULL	pfam_Ca-dep_secretion_activator,superfamily_C2_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	CADPS	HGNC	ENSG00000163618				207	1	0.480769	167	90	35.0195
PDZRN3	0	genome.wustl.edu	37	3	73432742	73432742	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	73432742	73432742	C	T	SNP	PDZRN3	ENST00000263666	human	ensembl	74_37	-1	known	missense	c.2975	p.R992H	1.000	NULL	pfam_PDZ,pfam_Znf_C3HC4_RING-type,superfamily_PDZ,superfamily_TRAF-like,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	PDZRN3	HGNC	ENSG00000121440				100	0	0	73	39	34.8214
PDZRN3	0	genome.wustl.edu	37	3	73432975	73432975	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	73432975	73432975	C	T	SNP	PDZRN3	ENST00000263666	human	ensembl	74_37	-1	known	silent	c.2742	p.P914	0.000	NULL	pfam_PDZ,pfam_Znf_C3HC4_RING-type,superfamily_PDZ,superfamily_TRAF-like,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	PDZRN3	HGNC	ENSG00000121440				62	0	0	24	17	41.4634
GRM7	0	genome.wustl.edu	37	3	7503408	7503408	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	7503408	7503408	A	T	SNP	GRM7	ENST00000402647	human	ensembl	74_37	+1	known	missense	c.1514	p.N505I	0.998	superfamily_Peripla_BP_I,prints_GPCR_3_mtglu_rcpt_4	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_7,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4	-	no_errors	GRM7	HGNC	ENSG00000196277				125	0	0	102	10	8.92857
ROBO1	0	genome.wustl.edu	37	3	78685077	78685077	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	78685077	78685077	G	A	SNP	ROBO1	ENST00000464233	human	ensembl	74_37	-1	known	silent	c.3219	p.Y1073	0.154	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO1	HGNC	ENSG00000169855				106	0	0	75	33	30.5556
CMSS1	0	genome.wustl.edu	37	3	99890707	99890707	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	99890707	99890707	C	T	SNP	CMSS1	ENST00000421999	human	ensembl	74_37	+1	known	silent	c.543	p.D181	0.995	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase	-	no_errors	CMSS1	HGNC	ENSG00000184220				63	0	0	62	19	23.4568
CASP6	0	genome.wustl.edu	37	4	110618908	110618908	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	4	110618908	110618908	C	T	SNP	CASP6	ENST00000265164	human	ensembl	74_37	-1	known	missense	c.100	p.A34T	0.017	NULL	pfam_Pept_C14_caspase,smart_Pept_C14A_p45_core,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14A_p45_core	-	no_errors	CASP6	HGNC	ENSG00000138794				38	0	0	53	5	8.62069
RRH	0	genome.wustl.edu	37	4	110757242	110757242	+	Silent	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	4	110757242	110757242	T	C	SNP	RRH	ENST00000317735	human	ensembl	74_37	+1	known	silent	c.477	p.P159	0.018	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Peropsin,prints_GPCR_Rhodpsn	-	no_errors	RRH	HGNC	ENSG00000180245				125	1	0.793651	109	48	30.5732
AP1AR	0	genome.wustl.edu	37	4	113189356	113189356	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	4	113189356	113189356	C	T	SNP	AP1AR	ENST00000274000	human	ensembl	74_37	+1	known	missense	c.700	p.R234W	0.950	NULL	NULL	-	no_errors	AP1AR	HGNC	ENSG00000138660				57	0	0	59	35	37.234
C4orf21	0	genome.wustl.edu	37	4	113462250	113462250	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	4	113462250	113462250	G	C	SNP	C4orf21	ENST00000505019	human	ensembl	74_37	-1	known	missense	c.5773	p.Q1925E	1.000	superfamily_P-loop_NTPase	pfam_DUF2439,pfam_Znf_GRF,superfamily_P-loop_NTPase	-	no_errors	C4orf21	HGNC	ENSG00000138658				20	0	0	6	3	33.3333
ZNF718	0	genome.wustl.edu	37	4	124517	124517	+	RNA	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	4	124517	124517	G	A	SNP	ZNF718	ENST00000510175	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZNF718	HGNC	ENSG00000250312				98	0	0	76	14	15.5556
FAT4	0	genome.wustl.edu	37	4	126238642	126238642	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	4	126238642	126238642	C	T	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	missense	c.1076	p.P359L	1.000	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				47	0	0	41	13	24.0741
UVSSA	0	genome.wustl.edu	37	4	1348916	1348916	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	4	1348916	1348916	C	T	SNP	UVSSA	ENST00000389851	human	ensembl	74_37	+1	known	silent	c.1059	p.R353	0.144	NULL	pfam_DUF2043,superfamily_ENTH_VHS	-	no_errors	UVSSA	HGNC	ENSG00000163945				36	0	0	14	10	41.6667
C1QTNF7	0	genome.wustl.edu	37	4	15444178	15444178	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	4	15444178	15444178	G	A	SNP	C1QTNF7	ENST00000429690	human	ensembl	74_37	+1	known	missense	c.625	p.G209R	1.000	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF7	HGNC	ENSG00000163145				216	0	0	178	76	29.9213
KLHL2	0	genome.wustl.edu	37	4	166238981	166238981	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	4	166238981	166238981	T	G	SNP	KLHL2	ENST00000226725	human	ensembl	74_37	+1	known	missense	c.1613	p.V538G	1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL2	HGNC	ENSG00000109466				69	0	0	68	38	35.8491
SPOCK3	0	genome.wustl.edu	37	4	167675677	167675677	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	4	167675677	167675677	A	C	SNP	SPOCK3	ENST00000357154	human	ensembl	74_37	-1	known	missense	c.922	p.C308G	1.000	pfam_SPARC/Testican_Ca-bd-dom	pfam_SPARC/Testican_Ca-bd-dom,pfam_Thyroglobulin_1,pfam_Kazal_dom,superfamily_Thyroglobulin_1,smart_Kazal_dom,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	-	no_errors	SPOCK3	HGNC	ENSG00000196104				61	0	0	24	34	58.6207
PALLD	0	genome.wustl.edu	37	4	169812119	169812119	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	4	169812119	169812119	G	T	SNP	PALLD	ENST00000261509	human	ensembl	74_37	+1	known	nonsense	c.2011	p.E671*	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PALLD	HGNC	ENSG00000129116				72	0	0	74	35	32.1101
NEK1	0	genome.wustl.edu	37	4	170345785	170345785	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	4	170345785	170345785	C	T	SNP	NEK1	ENST00000507142	human	ensembl	74_37	-1	known	silent	c.3141	p.S1047	0.993	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK1	HGNC	ENSG00000137601				43	0	0	19	42	68.8525
TENM3	0	genome.wustl.edu	37	4	183600990	183600990	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	4	183600990	183600990	A	G	SNP	TENM3	ENST00000406950	human	ensembl	74_37	+1	known	missense	c.1498	p.K500E	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Cyt_c-like_dom,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM3	HGNC	ENSG00000218336				16	0	0	6	6	50
MTNR1A	0	genome.wustl.edu	37	4	187455100	187455100	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	4	187455100	187455100	C	T	SNP	MTNR1A	ENST00000307161	human	ensembl	74_37	-1	known	missense	c.796	p.A266T	0.001	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Mel_1A_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Melatonin_rcpt,prints_GPCR_Rhodpsn,prints_Mel_1A_rcpt,prints_NPY_rcpt,prints_Mel_rcpt_1C	-	no_errors	MTNR1A	HGNC	ENSG00000168412				107	0	0	36	88	70.9677
ZFYVE28	0	genome.wustl.edu	37	4	2306791	2306791	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	4	2306791	2306791	C	T	SNP	ZFYVE28	ENST00000290974	human	ensembl	74_37	-1	known	missense	c.1276	p.A426T	0.459	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE28	HGNC	ENSG00000159733				43	0	0	21	14	40
LGI2	0	genome.wustl.edu	37	4	25014047	25014047	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	4	25014047	25014047	C	T	SNP	LGI2	ENST00000382114	human	ensembl	74_37	-1	known	missense	c.730	p.V244M	1.000	pfam_EPTP,pfscan_EAR	pfam_EPTP,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_EAR	-	no_errors	LGI2	HGNC	ENSG00000153012				75	0	0	86	7	7.52688
ZCCHC4	0	genome.wustl.edu	37	4	25334863	25334863	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	4	25334863	25334863	C	T	SNP	ZCCHC4	ENST00000302874	human	ensembl	74_37	+1	known	nonsense	c.388	p.Q130*	1.000	NULL	pfam_Znf_GRF,pfam_N6_adenine_Mtase-rel_euk,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZCCHC4	HGNC	ENSG00000168228				58	0	0	44	20	31.25
SLC34A2	0	genome.wustl.edu	37	4	25665888	25665888	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	4	25665888	25665888	C	T	SNP	SLC34A2	ENST00000382051	human	ensembl	74_37	+1	known	silent	c.315	p.L105	0.997	tigrfam_Na/Pi_transpt	pfam_Na/Pi_transpt,superfamily_ABC1_TM_dom,tigrfam_Na/Pi_transpt	-	no_errors	SLC34A2	HGNC	ENSG00000157765				83	0	0	69	38	35.514
TNIP2	0	genome.wustl.edu	37	4	2746454	2746454	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	4	2746454	2746454	C	T	SNP	TNIP2	ENST00000315423	human	ensembl	74_37	-1	known	silent	c.876	p.A292	0.012	NULL	pfam_EABR	-	no_errors	TNIP2	HGNC	ENSG00000168884				43	0	0	31	17	35.4167
NOP14	0	genome.wustl.edu	37	4	2948228	2948228	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	4	2948228	2948228	C	T	SNP	NOP14	ENST00000416614	human	ensembl	74_37	-1	known	missense	c.1546	p.A516T	0.000	pfam_Nop14	pfam_Nop14	-	no_errors	NOP14	HGNC	ENSG00000087269				71	0	0	43	19	30.6452
CHRNA9	0	genome.wustl.edu	37	4	40356371	40356371	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	4	40356371	40356371	C	T	SNP	CHRNA9	ENST00000310169	human	ensembl	74_37	+1	known	missense	c.1274	p.T425M	0.986	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA9	HGNC	ENSG00000174343				60	0	0	47	21	30.8824
BEND4	0	genome.wustl.edu	37	4	42119703	42119703	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	4	42119703	42119703	C	T	SNP	BEND4	ENST00000502486	human	ensembl	74_37	-1	known	silent	c.1437	p.S479	0.009	pfam_BEN_domain	pfam_BEN_domain	-	no_errors	BEND4	HGNC	ENSG00000188848				14	0	0	14	6	30
ZBTB49	0	genome.wustl.edu	37	4	4304088	4304088	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	4	4304088	4304088	G	A	SNP	ZBTB49	ENST00000503703	human	ensembl	74_37	+1	known	missense	c.203	p.R68H	0.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,pfscan_BTB/POZ-like	-	no_errors	ZBTB49	HGNC	ENSG00000168826				108	1	0.917431	87	21	19.4444
FRYL	0	genome.wustl.edu	37	4	48569288	48569288	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	4	48569288	48569288	G	A	SNP	FRYL	ENST00000358350	human	ensembl	74_37	-1	known	missense	c.3146	p.A1049V	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FRYL	HGNC	ENSG00000075539				33	0	0	19	12	38.7097
DCUN1D4	0	genome.wustl.edu	37	4	52779825	52779825	+	RNA	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	4	52779825	52779825	A	G	SNP	DCUN1D4	ENST00000508257	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	DCUN1D4	HGNC	ENSG00000109184				37	0	0	29	12	29.2683
LRRC66	0	genome.wustl.edu	37	4	52861190	52861190	+	Silent	SNP	T	T	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	4	52861190	52861190	T	G	SNP	LRRC66	ENST00000343457	human	ensembl	74_37	-1	known	silent	c.1998	p.P666	0.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC66	HGNC	ENSG00000188993				66	0	0	48	28	36.8421
GSX2	0	genome.wustl.edu	37	4	54966533	54966533	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	4	54966533	54966533	G	A	SNP	GSX2	ENST00000326902	human	ensembl	74_37	+1	known	missense	c.22	p.D8N	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	GSX2	HGNC	ENSG00000180613				21	0	0	18	5	21.7391
EVC2	0	genome.wustl.edu	37	4	5664926	5664926	+	Silent	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	4	5664926	5664926	A	G	SNP	EVC2	ENST00000344408	human	ensembl	74_37	-1	known	silent	c.1053	p.A351	0.000	pfam_Limbin	pfam_Limbin	-	no_errors	EVC2	HGNC	ENSG00000173040				85	0	0	83	7	7.77778
KIAA1211	0	genome.wustl.edu	37	4	57181853	57181853	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	4	57181853	57181853	T	C	SNP	KIAA1211	ENST00000504228	human	ensembl	74_37	+1	known	missense	c.2185	p.S729P	0.999	NULL	NULL	-	no_errors	KIAA1211	HGNC	ENSG00000109265				81	0	0	65	33	33.6735
EVC	0	genome.wustl.edu	37	4	5733277	5733277	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	4	5733277	5733277	C	T	SNP	EVC	ENST00000264956	human	ensembl	74_37	+1	known	silent	c.510	p.D170	0.542	NULL	NULL	-	no_errors	EVC	HGNC	ENSG00000072840				87	0	0	55	20	26.6667
CRMP1	0	genome.wustl.edu	37	4	5862758	5862758	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	4	5862758	5862758	A	G	SNP	CRMP1	ENST00000324989	human	ensembl	74_37	-1	known	missense	c.650	p.M217T	1.000	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	CRMP1	HGNC	ENSG00000072832				34	0	0	17	11	39.2857
CSN3	0	genome.wustl.edu	37	4	71114781	71114781	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	4	71114781	71114781	C	T	SNP	CSN3	ENST00000304954	human	ensembl	74_37	+1	known	missense	c.154	p.P52S	0.000	pfam_Casein_kappa,pirsf_Casein_kappa	pfam_Casein_kappa,pirsf_Casein_kappa	-	no_errors	CSN3	HGNC	ENSG00000171209				92	0	0	67	32	32.3232
CABS1	0	genome.wustl.edu	37	4	71201047	71201047	+	Silent	SNP	C	C	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	4	71201047	71201047	C	A	SNP	CABS1	ENST00000273936	human	ensembl	74_37	+1	known	silent	c.291	p.T97	0.001	NULL	NULL	-	no_errors	CABS1	HGNC	ENSG00000145309				81	0	0	69	21	23.3333
NAAA	0	genome.wustl.edu	37	4	76842177	76842177	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	4	76842177	76842177	G	A	SNP	NAAA	ENST00000286733	human	ensembl	74_37	-1	known	missense	c.766	p.R256W	0.000	pfam_Chologlycine_hydro,pirsf_Acid_ceramidase-like	pfam_Chologlycine_hydro,pirsf_Acid_ceramidase-like	-	no_errors	NAAA	HGNC	ENSG00000138744				46	0	0	41	35	46.0526
AFAP1-AS1	0	genome.wustl.edu	37	4	7776691	7776691	+	RNA	SNP	C	C	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	4	7776691	7776691	C	A	SNP	AFAP1-AS1	ENST00000608442	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AFAP1-AS1	HGNC	ENSG00000272620				37	0	0	42	12	22.2222
SOWAHB	0	genome.wustl.edu	37	4	77817102	77817102	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	4	77817102	77817102	G	A	SNP	SOWAHB	ENST00000334306	human	ensembl	74_37	-1	known	missense	c.1901	p.A634V	0.999	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	SOWAHB	HGNC	ENSG00000186212				119	0	0	111	49	30.625
FRAS1	0	genome.wustl.edu	37	4	79371314	79371314	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	4	79371314	79371314	C	T	SNP	FRAS1	ENST00000264895	human	ensembl	74_37	+1	known	missense	c.6284	p.A2095V	0.974	NULL	pfam_Calx_beta,pfam_VWF_C,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_VWC_out,smart_VWF_C,smart_Furin_repeat,smart_EG-like_dom,smart_Calx_beta,pfscan_VWF_C	-	no_errors	FRAS1	HGNC	ENSG00000138759				93	0	0	71	29	29
PRDM8	0	genome.wustl.edu	37	4	81122567	81122567	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	4	81122567	81122567	C	T	SNP	PRDM8	ENST00000339711	human	ensembl	74_37	+1	known	missense	c.343	p.R115C	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	PRDM8	HGNC	ENSG00000152784				58	0	0	51	19	27.1429
BMP3	0	genome.wustl.edu	37	4	81952623	81952623	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	4	81952623	81952623	G	A	SNP	BMP3	ENST00000282701	human	ensembl	74_37	+1	known	missense	c.185	p.R62Q	0.847	pfam_TGF-b_N,pirsf_BMP3/GDF10	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,pirsf_BMP3/GDF10	-	no_errors	BMP3	HGNC	ENSG00000152785				27	0	0	20	5	20
SLC10A6	0	genome.wustl.edu	37	4	87754575	87754575	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	4	87754575	87754575	A	G	SNP	SLC10A6	ENST00000273905	human	ensembl	74_37	-1	known	missense	c.380	p.I127T	1.000	pfam_BilAc/Na_symport,tigrfam_Bil_ac_transpt	pfam_BilAc/Na_symport,tigrfam_Bil_ac_transpt	-	no_errors	SLC10A6	HGNC	ENSG00000145283				76	0	0	82	9	9.89011
KLHL8	0	genome.wustl.edu	37	4	88091757	88091757	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	4	88091757	88091757	C	T	SNP	KLHL8	ENST00000273963	human	ensembl	74_37	-1	known	missense	c.1219	p.A407T	1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_Kelch_2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL8	HGNC	ENSG00000145332				60	0	0	65	19	22.619
HERC5	0	genome.wustl.edu	37	4	89388315	89388315	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	4	89388315	89388315	G	A	SNP	HERC5	ENST00000264350	human	ensembl	74_37	+1	known	silent	c.1017	p.P339	0.821	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,pfscan_Reg_chr_condens	pfam_HECT,pfam_Reg_chr_condens,superfamily_HECT,superfamily_RCC1/BLIP-II,superfamily_Haem_Oase-like_multi-hlx,smart_HECT,pfscan_HECT,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	HERC5	HGNC	ENSG00000138646				95	0	0	78	35	30.9735
PDHA2	0	genome.wustl.edu	37	4	96761964	96761964	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	4	96761964	96761964	G	T	SNP	PDHA2	ENST00000295266	human	ensembl	74_37	+1	known	missense	c.663	p.E221D	1.000	pfam_DH_E1,tigrfam_Pyrv_DH_E1_asu_subgrp-y	pfam_DH_E1,tigrfam_Pyrv_DH_E1_asu_subgrp-y	-	no_errors	PDHA2	HGNC	ENSG00000163114				76	0	0	48	12	20
DRD5	0	genome.wustl.edu	37	4	9784659	9784659	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	4	9784659	9784659	G	A	SNP	DRD5	ENST00000304374	human	ensembl	74_37	+1	known	missense	c.1006	p.V336I	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Dopamine_D5_rcpt,prints_Dopamine_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Dopamine_D5_rcpt,prints_Dopamine_rcpt	-	no_errors	DRD5	HGNC	ENSG00000169676				86	0	0	80	33	29.2035
TSPAN5	0	genome.wustl.edu	37	4	99397385	99397385	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	4	99397385	99397385	A	T	SNP	TSPAN5	ENST00000305798	human	ensembl	74_37	-1	known	missense	c.696	p.N232K	1.000	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN5	HGNC	ENSG00000168785				71	0	0	71	13	15.4762
SLC2A9	0	genome.wustl.edu	37	4	9987317	9987317	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	4	9987317	9987317	G	A	SNP	SLC2A9	ENST00000264784	human	ensembl	74_37	-1	known	missense	c.511	p.R171C	0.998	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A9	HGNC	ENSG00000109667				58	0	0	52	21	28.7671
CDO1	0	genome.wustl.edu	37	5	115152216	115152216	+	RNA	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	115152216	115152216	G	A	SNP	CDO1	ENST00000504613	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	CDO1	HGNC	ENSG00000129596				14	0	0	13	8	38.0952
AQPEP	0	genome.wustl.edu	37	5	115299005	115299005	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	115299005	115299005	C	T	SNP	AQPEP	ENST00000357872	human	ensembl	74_37	+1	known	missense	c.691	p.R231C	0.993	pfam_Peptidase_M1_N	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	AQPEP	Uniprot_gn	ENSG00000172901				27	0	0	17	9	34.6154
ZNF474	0	genome.wustl.edu	37	5	121488203	121488203	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	121488203	121488203	G	A	SNP	ZNF474	ENST00000296600	human	ensembl	74_37	+1	known	missense	c.518	p.R173H	0.997	pfscan_Znf_C2H2	pfscan_Znf_C2H2	-	no_errors	ZNF474	HGNC	ENSG00000164185				55	0	0	35	26	42.623
SNCAIP	0	genome.wustl.edu	37	5	121776408	121776408	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	121776408	121776408	G	A	SNP	SNCAIP	ENST00000379533	human	ensembl	74_37	+1	known	missense	c.1522	p.V508I	0.994	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	SNCAIP	HGNC	ENSG00000064692				102	0	0	78	44	36.0656
CSNK1G3	0	genome.wustl.edu	37	5	122941058	122941058	+	Splice_Site	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	122941058	122941058	T	C	SNP	CSNK1G3	ENST00000360683	human	ensembl	74_37	+1	known	splice_site	c.1313+2	e12+2	1.000	-	-	-	no_errors	CSNK1G3	HGNC	ENSG00000151292				53	0	0	48	22	31.4286
ZNF608	0	genome.wustl.edu	37	5	123983851	123983851	+	Silent	SNP	T	T	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	123983851	123983851	T	A	SNP	ZNF608	ENST00000306315	human	ensembl	74_37	-1	known	silent	c.2226	p.P742	0.053	NULL	NULL	-	no_errors	ZNF608	HGNC	ENSG00000168916				27	0	0	20	8	28.5714
ZNF608	0	genome.wustl.edu	37	5	123984642	123984642	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	123984642	123984642	G	A	SNP	ZNF608	ENST00000306315	human	ensembl	74_37	-1	known	nonsense	c.1435	p.R479*	0.947	NULL	NULL	-	no_errors	ZNF608	HGNC	ENSG00000168916				78	0	0	56	26	31.7073
PRRC1	0	genome.wustl.edu	37	5	126874760	126874760	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	126874760	126874760	G	A	SNP	PRRC1	ENST00000512635	human	ensembl	74_37	+1	known	missense	c.950	p.R317H	1.000	pfam_NTPase/PRRC1	pfam_NTPase/PRRC1	-	no_errors	PRRC1	HGNC	ENSG00000164244				83	0	0	47	24	33.8028
P4HA2	0	genome.wustl.edu	37	5	131543466	131543466	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	131543466	131543466	C	T	SNP	P4HA2	ENST00000166534	human	ensembl	74_37	-1	known	missense	c.1015	p.V339I	1.000	smart_Pro_4_hyd_alph	pfam_Pro_4_hyd_alph_N,pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	P4HA2	HGNC	ENSG00000072682				125	1	0.793651	117	56	32.3699
PDLIM4	0	genome.wustl.edu	37	5	131606656	131606656	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	131606656	131606656	C	T	SNP	PDLIM4	ENST00000253754	human	ensembl	74_37	+1	known	missense	c.376	p.P126S	0.064	NULL	pfam_PDZ,pfam_Znf_LIM,superfamily_PDZ,smart_PDZ,smart_Znf_LIM,pfscan_Znf_LIM,pfscan_PDZ	-	no_errors	PDLIM4	HGNC	ENSG00000131435				120	1	0.826446	94	22	18.9655
RAD50	0	genome.wustl.edu	37	5	131953826	131953826	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	131953826	131953826	C	T	SNP	RAD50	ENST00000265335	human	ensembl	74_37	+1	known	nonsense	c.3229	p.R1077*	1.000	superfamily_P-loop_NTPase,tigrfam_Rad50_eukaryotes	pfam_Rad50_Zn_hook,superfamily_P-loop_NTPase,superfamily_Prefoldin,pfscan_Zn_hook_Rad50,tigrfam_Rad50_eukaryotes	-	no_errors	RAD50	HGNC	ENSG00000113522				196	0	0	162	61	27.3543
TRPC7	0	genome.wustl.edu	37	5	135692750	135692750	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	135692750	135692750	G	A	SNP	TRPC7	ENST00000513104	human	ensembl	74_37	-1	known	missense	c.326	p.A109V	0.999	superfamily_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,pfam_PKD1_2_channel,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,prints_TRPC7_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC7	HGNC	ENSG00000069018				49	0	0	31	14	31.1111
FAM13B	0	genome.wustl.edu	37	5	137278577	137278577	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	137278577	137278577	G	A	SNP	FAM13B	ENST00000033079	human	ensembl	74_37	-1	known	nonsense	c.2509	p.R837*	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	FAM13B	HGNC	ENSG00000031003				74	0	0	63	33	34.375
FAM13B	0	genome.wustl.edu	37	5	137289904	137289904	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	137289904	137289904	G	A	SNP	FAM13B	ENST00000033079	human	ensembl	74_37	-1	known	missense	c.1603	p.H535Y	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	FAM13B	HGNC	ENSG00000031003				61	0	0	53	30	36.1446
WNT8A	0	genome.wustl.edu	37	5	137420203	137420203	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	137420203	137420203	C	T	SNP	WNT8A	ENST00000361560	human	ensembl	74_37	+1	known	missense	c.119	p.T40M	0.976	pfam_Wnt,smart_Wnt,prints_Wnt8	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt8	-	no_errors	WNT8A	HGNC	ENSG00000061492				65	0	0	43	28	39.4366
NRG2	0	genome.wustl.edu	37	5	139251390	139251390	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	139251390	139251390	C	T	SNP	NRG2	ENST00000545385	human	ensembl	74_37	-1	known	missense	c.1028	p.R343Q	1.000	pfscan_EG-like_dom	pfam_Neuregulin_1_C,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_EG-like_dom,pfscan_Ig-like_dom	-	no_errors	NRG2	HGNC	ENSG00000158458				76	0	0	68	22	24.4444
PCDHA1	0	genome.wustl.edu	37	5	140166534	140166534	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	140166534	140166534	C	T	SNP	PCDHA1	ENST00000504120	human	ensembl	74_37	+1	known	missense	c.659	p.P220L	0.999	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA1	HGNC	ENSG00000204970				57	0	0	63	24	27.5862
PCDHA1	0	genome.wustl.edu	37	5	140167731	140167731	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	140167731	140167731	G	A	SNP	PCDHA1	ENST00000504120	human	ensembl	74_37	+1	known	missense	c.1856	p.R619H	0.707	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA1	HGNC	ENSG00000204970				75	0	0	86	8	8.51064
PCDHA3	0	genome.wustl.edu	37	5	140182842	140182842	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	140182842	140182842	C	T	SNP	PCDHA3	ENST00000522353	human	ensembl	74_37	+1	known	missense	c.2060	p.T687M	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA3	HGNC	ENSG00000255408				77	0	0	51	24	32
PCDHA5	0	genome.wustl.edu	37	5	140202765	140202765	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	140202765	140202765	C	A	SNP	PCDHA5	ENST00000529859	human	ensembl	74_37	+1	known	missense	c.1405	p.P469T	0.801	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA5	HGNC	ENSG00000204965				79	0	0	74	26	26
PCDHA6	0	genome.wustl.edu	37	5	140209889	140209889	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	140209889	140209889	C	T	SNP	PCDHA6	ENST00000529310	human	ensembl	74_37	+1	known	missense	c.2213	p.T738M	0.024	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA6	HGNC	ENSG00000081842				55	0	0	31	21	40.3846
PCDHA7	0	genome.wustl.edu	37	5	140215576	140215576	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	140215576	140215576	C	T	SNP	PCDHA7	ENST00000525929	human	ensembl	74_37	+1	known	silent	c.1608	p.S536	0.524	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA7	HGNC	ENSG00000204963				112	0	0	72	33	31.4286
PCDHA13	0	genome.wustl.edu	37	5	140263515	140263515	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	140263515	140263515	C	T	SNP	PCDHA13	ENST00000289272	human	ensembl	74_37	+1	known	silent	c.1662	p.F554	0.972	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA13	HGNC	ENSG00000239389				114	0	0	81	48	37.2093
PCDHA13	0	genome.wustl.edu	37	5	140264043	140264043	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	140264043	140264043	C	T	SNP	PCDHA13	ENST00000289272	human	ensembl	74_37	+1	known	silent	c.2190	p.G730	0.538	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA13	HGNC	ENSG00000239389				89	0	0	60	16	21.0526
PCDHAC1	0	genome.wustl.edu	37	5	140306840	140306840	+	Silent	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	140306840	140306840	A	G	SNP	PCDHAC1	ENST00000253807	human	ensembl	74_37	+1	known	silent	c.363	p.S121	0.394	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHAC1	HGNC	ENSG00000248383				59	0	0	33	18	35.2941
PCDHB7	0	genome.wustl.edu	37	5	140553146	140553146	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	140553146	140553146	C	T	SNP	PCDHB7	ENST00000231137	human	ensembl	74_37	+1	known	missense	c.730	p.R244W	0.996	superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB7	HGNC	ENSG00000113212				64	0	0	44	26	37.1429
PCDHB7	0	genome.wustl.edu	37	5	140554034	140554034	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	140554034	140554034	G	A	SNP	PCDHB7	ENST00000231137	human	ensembl	74_37	+1	known	missense	c.1618	p.A540T	0.997	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB7	HGNC	ENSG00000113212				78	0	0	45	21	31.8182
PCDHB16	0	genome.wustl.edu	37	5	140564007	140564007	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	140564007	140564007	C	T	SNP	PCDHB16	ENST00000361016	human	ensembl	74_37	+1	known	missense	c.1873	p.R625C	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB16	HGNC	ENSG00000196963				36	0	0	17	10	37.037
PCDHGB4	0	genome.wustl.edu	37	5	140768432	140768432	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	140768432	140768432	G	A	SNP	PCDHGB4	ENST00000519479	human	ensembl	74_37	+1	known	silent	c.981	p.A327	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB4	HGNC	ENSG00000253953				53	0	0	47	12	20.339
ARHGAP26	0	genome.wustl.edu	37	5	142437258	142437258	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	142437258	142437258	G	A	SNP	ARHGAP26	ENST00000274498	human	ensembl	74_37	+1	known	missense	c.1484	p.R495Q	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,pfam_IRSp53/MIM_homology_IMD,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_RhoGAP_dom,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP26	HGNC	ENSG00000145819				129	0	0	93	34	26.7717
ARHGAP26	0	genome.wustl.edu	37	5	142513670	142513670	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	142513670	142513670	C	T	SNP	ARHGAP26	ENST00000274498	human	ensembl	74_37	+1	known	nonsense	c.1837	p.Q613*	1.000	NULL	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,pfam_IRSp53/MIM_homology_IMD,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_RhoGAP_dom,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP26	HGNC	ENSG00000145819				87	0	0	61	29	32.2222
SH3RF2	0	genome.wustl.edu	37	5	145393517	145393517	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	145393517	145393517	C	T	SNP	SH3RF2	ENST00000359120	human	ensembl	74_37	+1	known	missense	c.952	p.R318C	1.000	NULL	pfam_SH3_2,pfam_SH3_domain,pfam_Znf_C3HC4_RING-type,superfamily_SH3_domain,smart_Znf_RING,smart_SH3_domain,pfscan_SH3_domain,pfscan_Znf_RING,prints_SH3_domain	-	no_errors	SH3RF2	HGNC	ENSG00000156463				126	0	0	95	48	33.5664
LPCAT1	0	genome.wustl.edu	37	5	1466903	1466903	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	1466903	1466903	G	A	SNP	LPCAT1	ENST00000283415	human	ensembl	74_37	-1	known	nonsense	c.1381	p.R461*	0.099	smart_EF_hand_dom,pfscan_EF_hand_dom	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	LPCAT1	HGNC	ENSG00000153395				68	0	0	63	7	10
DPYSL3	0	genome.wustl.edu	37	5	146778698	146778698	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	146778698	146778698	C	T	SNP	DPYSL3	ENST00000398514	human	ensembl	74_37	-1	known	missense	c.1228	p.V410I	1.000	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	DPYSL3	HGNC	ENSG00000113657				120	1	0.826446	106	62	36.9048
ANKH	0	genome.wustl.edu	37	5	14769138	14769138	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	14769138	14769138	C	T	SNP	ANKH	ENST00000284268	human	ensembl	74_37	-1	known	missense	c.259	p.V87I	0.993	pfam_ANKH	pfam_ANKH	-	no_errors	ANKH	HGNC	ENSG00000154122				48	0	0	31	16	34.0426
ABLIM3	0	genome.wustl.edu	37	5	148577904	148577904	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	148577904	148577904	G	A	SNP	ABLIM3	ENST00000309868	human	ensembl	74_37	+1	known	missense	c.274	p.E92K	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM	-	no_errors	ABLIM3	HGNC	ENSG00000173210				53	0	0	43	20	31.746
PDE6A	0	genome.wustl.edu	37	5	149263008	149263008	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	149263008	149263008	G	A	SNP	PDE6A	ENST00000255266	human	ensembl	74_37	-1	known	missense	c.2119	p.R707W	0.554	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE6A	HGNC	ENSG00000132915				36	0	0	16	10	38.4615
FAT2	0	genome.wustl.edu	37	5	150948236	150948236	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	150948236	150948236	T	G	SNP	FAT2	ENST00000261800	human	ensembl	74_37	-1	known	missense	c.257	p.E86A	0.980	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570				242	0	0	211	82	27.9863
ADRA1B	0	genome.wustl.edu	37	5	159399008	159399008	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	159399008	159399008	G	A	SNP	ADRA1B	ENST00000306675	human	ensembl	74_37	+1	known	missense	c.1072	p.A358T	1.000	pfam_7TM_GPCR_olfarory/Srsx,prints_ADR_fam	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_ADRA1B_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam	-	no_errors	ADRA1B	HGNC	ENSG00000170214				37	0	0	32	13	28.8889
FBLL1	0	genome.wustl.edu	37	5	167957486	167957486	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	167957486	167957486	G	A	SNP	FBLL1	ENST00000338333	human	ensembl	74_37	+1	putative	missense	c.977	p.R326Q	1.000	pfam_Fibrillarin,pirsf_Fibrillarin	pfam_Fibrillarin,pirsf_Fibrillarin,prints_Fibrillarin	-	no_errors	FBLL1	HGNC	ENSG00000188573				13	0	0	11	6	35.2941
DOCK2	0	genome.wustl.edu	37	5	169129410	169129410	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	169129410	169129410	G	A	SNP	DOCK2	ENST00000256935	human	ensembl	74_37	+1	known	silent	c.1362	p.A454	0.493	NULL	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_Cyt_c-like_dom,superfamily_ARM-type_fold,superfamily_Ferritin-like_SF,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK2	HGNC	ENSG00000134516				69	0	0	59	16	21.3333
GABRP	0	genome.wustl.edu	37	5	170236617	170236617	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	170236617	170236617	G	A	SNP	GABRP	ENST00000265294	human	ensembl	74_37	+1	known	missense	c.878	p.R293H	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAp_rcpt,prints_GABAA_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRP	HGNC	ENSG00000094755				161	0	0	158	75	32.1888
STK10	0	genome.wustl.edu	37	5	171614943	171614943	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	171614943	171614943	A	G	SNP	STK10	ENST00000176763	human	ensembl	74_37	-1	known	missense	c.104	p.V35A	1.000	superfamily_Kinase-like_dom	pfam_PKK,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	STK10	HGNC	ENSG00000072786				19	0	0	11	6	35.2941
CREBRF	0	genome.wustl.edu	37	5	172513563	172513563	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	172513563	172513563	G	A	SNP	CREBRF	ENST00000540014	human	ensembl	74_37	+1	known	silent	c.69	p.S23	0.996	NULL	NULL	-	no_errors	CREBRF	HGNC	ENSG00000164463				101	0	0	80	50	38.4615
HMP19	0	genome.wustl.edu	37	5	173491266	173491266	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	173491266	173491266	C	T	SNP	HMP19	ENST00000303177	human	ensembl	74_37	+1	known	missense	c.161	p.P54L	1.000	pfam_Calcyon_neuron-sp,pirsf_Calcyon_neuron-sp	pfam_Calcyon_neuron-sp,pirsf_Calcyon_neuron-sp	-	no_errors	NSG2	Uniprot_gn	ENSG00000170091				99	0	0	74	37	33.3333
FTH1P10	0	genome.wustl.edu	37	5	17354296	17354296	+	RNA	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	17354296	17354296	G	A	SNP	FTH1P10	ENST00000401830	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.966	-	-	-	no_errors	FTH1P10	HGNC	ENSG00000223361				110	0	0	95	37	28.0303
KIAA1191	0	genome.wustl.edu	37	5	175774483	175774483	+	RNA	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	175774483	175774483	C	T	SNP	KIAA1191	ENST00000393728	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	KIAA1191	HGNC	ENSG00000122203				22	0	0	16	8	33.3333
HK3	0	genome.wustl.edu	37	5	176310832	176310832	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	176310832	176310832	C	T	SNP	HK3	ENST00000292432	human	ensembl	74_37	-1	known	silent	c.1992	p.T664	0.799	pfam_Hexokinase_N,prints_Hexokinase	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	HK3	HGNC	ENSG00000160883				84	0	0	74	38	33.9286
RUFY1	0	genome.wustl.edu	37	5	179021923	179021923	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	179021923	179021923	A	T	SNP	RUFY1	ENST00000319449	human	ensembl	74_37	+1	known	missense	c.1470	p.K490N	1.000	NULL	pfam_Run,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,superfamily_Prefoldin,smart_Run,smart_Znf_FYVE,pfscan_Run,pfscan_Znf_FYVE-rel,pfscan_Znf_RING	-	no_errors	RUFY1	HGNC	ENSG00000176783				39	0	0	40	20	33.3333
MGAT4B	0	genome.wustl.edu	37	5	179229020	179229020	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	179229020	179229020	C	T	SNP	MGAT4B	ENST00000337755	human	ensembl	74_37	-1	known	missense	c.92	p.R31H	0.000	NULL	pfam_Glyco_transf_54	-	no_errors	MGAT4B	HGNC	ENSG00000161013				74	0	0	66	22	25
IRX4	0	genome.wustl.edu	37	5	1878859	1878859	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	1878859	1878859	C	T	SNP	IRX4	ENST00000231357	human	ensembl	74_37	-1	known	missense	c.784	p.D262N	0.998	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom	-	no_errors	IRX4	HGNC	ENSG00000113430				31	0	0	23	6	20.6897
C5orf38	0	genome.wustl.edu	37	5	2752844	2752844	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	2752844	2752844	G	A	SNP	C5orf38	ENST00000334000	human	ensembl	74_37	+1	known	silent	c.309	p.A103	0.001	NULL	NULL	-	no_errors	C5orf38	HGNC	ENSG00000186493				63	0	0	45	19	29.6875
MTMR12	0	genome.wustl.edu	37	5	32230244	32230244	+	Silent	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	32230244	32230244	T	C	SNP	MTMR12	ENST00000382142	human	ensembl	74_37	-1	known	silent	c.1884	p.L628	0.998	pfam_Myotubularin_assoc	pfam_Myotubularin_assoc	-	no_errors	MTMR12	HGNC	ENSG00000150712				136	0	0	97	45	31.6901
ZFR	0	genome.wustl.edu	37	5	32404048	32404048	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	32404048	32404048	G	A	SNP	ZFR	ENST00000265069	human	ensembl	74_37	-1	known	missense	c.1187	p.A396V	1.000	smart_Znf_U1,smart_Znf_C2H2-like	pfam_DZF,pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like,smart_DZF	-	no_errors	ZFR	HGNC	ENSG00000056097				66	0	0	47	33	41.25
RAI14	0	genome.wustl.edu	37	5	34824014	34824014	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	34824014	34824014	C	T	SNP	RAI14	ENST00000515799	human	ensembl	74_37	+1	known	silent	c.2076	p.N692	0.000	superfamily_UBA-like	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_t-SNARE,superfamily_UBA-like,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	RAI14	HGNC	ENSG00000039560				75	0	0	65	10	13.3333
MROH2B	0	genome.wustl.edu	37	5	41009422	41009422	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	41009422	41009422	G	A	SNP	MROH2B	ENST00000399564	human	ensembl	74_37	-1	known	missense	c.3380	p.T1127I	0.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	MROH2B	HGNC	ENSG00000171495				106	0	0	73	36	33.0275
C6	0	genome.wustl.edu	37	5	41203323	41203323	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	41203323	41203323	G	A	SNP	C6	ENST00000263413	human	ensembl	74_37	-1	known	missense	c.10	p.R4C	0.000	NULL	pfam_MACPF,pfam_Sushi_SCR_CCP,pfam_Thrombospondin_1_rpt,pfam_LDrepeatLR_classA_rpt,pfam_Kazal_dom,superfamily_Sushi_SCR_CCP,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,smart_Sushi_SCR_CCP,smart_FacI_MAC,prints_MAC_perforin,pfscan_LDrepeatLR_classA_rpt,pfscan_Sushi_SCR_CCP,pfscan_Thrombospondin_1_rpt	-	no_errors	C6	HGNC	ENSG00000039537				98	0	0	90	27	23.0769
NIM1	0	genome.wustl.edu	37	5	43280635	43280635	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	43280635	43280635	G	A	SNP	NIM1	ENST00000326035	human	ensembl	74_37	+1	known	missense	c.1115	p.R372Q	0.684	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	NIM1	Uniprot_gn	ENSG00000177453				111	0	0	130	20	13.3333
SLC9A3	0	genome.wustl.edu	37	5	488455	488455	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	488455	488455	C	T	SNP	SLC9A3	ENST00000264938	human	ensembl	74_37	-1	known	silent	c.651	p.S217	0.361	pfam_Cation/H_exchanger,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,superfamily_Reg_factor_effector_dom,prints_Na/H_exchanger_3/5,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A3	HGNC	ENSG00000066230				55	0	0	34	22	39.2857
PELO	0	genome.wustl.edu	37	5	52096812	52096812	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	52096812	52096812	G	A	SNP	PELO	ENST00000274311	human	ensembl	74_37	+1	known	missense	c.584	p.R195H	1.000	pfam_eRF1_2,tigrfam_Transl_rel_pelota-like	pfam_eRF1_1_Pelota,pfam_eRF1_2,pfam_eRF1_3,tigrfam_Transl_rel_pelota-like	-	no_errors	PELO	HGNC	ENSG00000152684				59	0	0	31	26	45.614
HTR1A	0	genome.wustl.edu	37	5	63256991	63256991	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	63256991	63256991	C	T	SNP	HTR1A	ENST00000323865	human	ensembl	74_37	-1	known	missense	c.556	p.A186T	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_5HT1A_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_5HT1A_rcpt,prints_GPCR_Rhodpsn,prints_5HT_rcpt,prints_NPY_rcpt	-	no_errors	HTR1A	HGNC	ENSG00000178394				122	0	0	49	41	45.5556
SREK1	0	genome.wustl.edu	37	5	65473381	65473381	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	65473381	65473381	C	T	SNP	SREK1	ENST00000334121	human	ensembl	74_37	+1	known	silent	c.1620	p.D540	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SREK1	HGNC	ENSG00000153914				89	0	0	53	36	40.4494
ZNF366	0	genome.wustl.edu	37	5	71756348	71756348	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	71756348	71756348	G	A	SNP	ZNF366	ENST00000318442	human	ensembl	74_37	-1	known	missense	c.976	p.R326C	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF366	HGNC	ENSG00000178175				63	0	0	26	19	42.2222
FCHO2	0	genome.wustl.edu	37	5	72377779	72377779	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	72377779	72377779	C	T	SNP	FCHO2	ENST00000341845	human	ensembl	74_37	+1	known	missense	c.2150	p.T717M	0.975	NULL	pfam_Muniscin_C-term_mu_dom,pfam_FCH_dom,smart_FCH_dom,pfscan_FCH_dom	-	no_errors	FCHO2	HGNC	ENSG00000157107				108	0	0	87	46	34.5865
UTP15	0	genome.wustl.edu	37	5	72868406	72868406	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	72868406	72868406	C	T	SNP	UTP15	ENST00000296792	human	ensembl	74_37	+1	known	silent	c.766	p.L256	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_U3_snoRNA-assocProt_15_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	UTP15	HGNC	ENSG00000164338				135	0	0	99	57	36.5385
ADCY2	0	genome.wustl.edu	37	5	7709334	7709334	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	7709334	7709334	G	A	SNP	ADCY2	ENST00000338316	human	ensembl	74_37	+1	known	missense	c.1412	p.R471Q	0.998	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY2	HGNC	ENSG00000078295				43	0	0	37	18	32.7273
HOMER1	0	genome.wustl.edu	37	5	78697766	78697766	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	78697766	78697766	G	A	SNP	HOMER1	ENST00000334082	human	ensembl	74_37	-1	known	nonsense	c.640	p.Q214*	1.000	NULL	pfam_WH1/EVH1,smart_WH1/EVH1,pfscan_WH1/EVH1	-	no_errors	HOMER1	HGNC	ENSG00000152413				100	0	0	85	23	21.2963
ACOT12	0	genome.wustl.edu	37	5	80667576	80667576	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	80667576	80667576	C	T	SNP	ACOT12	ENST00000307624	human	ensembl	74_37	-1	known	missense	c.251	p.S84N	1.000	pfam_Thioestr_supf	pfam_Thioestr_supf,pfam_START_lipid-bd_dom,pfscan_START_lipid-bd_dom	-	no_errors	ACOT12	HGNC	ENSG00000172497				87	0	0	67	23	25.5556
GPR98	0	genome.wustl.edu	37	5	89923028	89923028	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	89923028	89923028	G	A	SNP	GPR98	ENST00000405460	human	ensembl	74_37	+1	known	missense	c.673	p.V225I	1.000	pfam_Calx_beta,smart_Calx_beta	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199				9	0	0	6	6	50
NR2F1	0	genome.wustl.edu	37	5	92923762	92923762	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	92923762	92923762	G	A	SNP	NR2F1	ENST00000327111	human	ensembl	74_37	+1	known	silent	c.603	p.S201	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_COUP_TF,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Retinoid-X_rcpt/HNF4	-	no_errors	NR2F1	HGNC	ENSG00000175745				41	0	0	26	17	39.5349
METTL24	0	genome.wustl.edu	37	6	110620298	110620298	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	110620298	110620298	C	A	SNP	METTL24	ENST00000338882	human	ensembl	74_37	-1	known	missense	c.613	p.V205L	1.000	NULL	NULL	-	no_errors	METTL24	HGNC	ENSG00000053328				81	0	0	106	7	6.19469
GJA1	0	genome.wustl.edu	37	6	121768495	121768495	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	121768495	121768495	G	A	SNP	GJA1	ENST00000282561	human	ensembl	74_37	+1	known	missense	c.502	p.A168T	1.000	pfam_Connexin_CCC,prints_Connexin	pfam_Connexin_N,pfam_Connexin_CCC,pfam_Connexin43_C,smart_Connexin_N,prints_Connexin,prints_Connexin43	-	no_errors	GJA1	HGNC	ENSG00000152661				122	0	0	79	38	32.4786
PTPRK	0	genome.wustl.edu	37	6	128318068	128318068	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	128318068	128318068	G	T	SNP	PTPRK	ENST00000368227	human	ensembl	74_37	-1	known	missense	c.2781	p.N927K	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRK	HGNC	ENSG00000152894				26	0	0	16	5	23.8095
UTRN	0	genome.wustl.edu	37	6	144878337	144878337	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	144878337	144878337	G	A	SNP	UTRN	ENST00000367545	human	ensembl	74_37	+1	known	silent	c.7179	p.A2393	0.000	smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	UTRN	HGNC	ENSG00000152818				72	0	0	49	25	33.7838
EPM2A	0	genome.wustl.edu	37	6	145948796	145948796	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	145948796	145948796	A	G	SNP	EPM2A	ENST00000367519	human	ensembl	74_37	-1	known	missense	c.752	p.L251P	1.000	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,pfam_CBM_fam20,superfamily_Carb-bd-like_fold,smart_Dual-sp_phosphatase_subgr_cat,pfscan_CBM_fam20,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	EPM2A	HGNC	ENSG00000112425				24	0	0	28	3	9.67742
SHPRH	0	genome.wustl.edu	37	6	146262872	146262872	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	146262872	146262872	G	A	SNP	SHPRH	ENST00000367503	human	ensembl	74_37	-1	known	missense	c.2377	p.R793C	1.000	pfam_SNF2_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd	pfam_SNF2_N,pfam_Histone_H1/H5_H15,superfamily_P-loop_NTPase,superfamily_Znf_FYVE_PHD,superfamily_WW_dom,smart_Helicase_ATP-bd,smart_Histone_H1/H5_H15,smart_Znf_PHD,smart_Znf_RING,smart_Helicase_C,pfscan_Znf_RING,pfscan_Helicase_C	-	no_errors	SHPRH	HGNC	ENSG00000146414				55	0	0	57	18	24
ULBP1	0	genome.wustl.edu	37	6	150290280	150290280	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	150290280	150290280	G	T	SNP	ULBP1	ENST00000229708	human	ensembl	74_37	+1	known	nonsense	c.409	p.G137*	0.002	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	-	no_errors	ULBP1	HGNC	ENSG00000111981				103	0	0	71	36	33.6449
SYNE1	0	genome.wustl.edu	37	6	152469223	152469223	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	152469223	152469223	C	A	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	missense	c.24933	p.Q8311H	0.523	NULL	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				66	0	0	37	23	38.3333
TIAM2	0	genome.wustl.edu	37	6	155561718	155561718	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	155561718	155561718	G	A	SNP	TIAM2	ENST00000456144	human	ensembl	74_37	+1	known	missense	c.3223	p.G1075S	0.003	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,superfamily_HR1_rho-bd,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM2	HGNC	ENSG00000146426				63	0	0	44	24	35.2941
SYNJ2	0	genome.wustl.edu	37	6	158492720	158492720	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	158492720	158492720	G	T	SNP	SYNJ2	ENST00000355585	human	ensembl	74_37	+1	known	missense	c.2027	p.S676I	1.000	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	pfam_Syja_N,pfam_DUF1866,pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc,pfscan_RRM_dom,pfscan_Syja_N	-	no_errors	SYNJ2	HGNC	ENSG00000078269				37	0	0	22	14	38.8889
ACAT2	0	genome.wustl.edu	37	6	160199806	160199806	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	160199806	160199806	C	T	SNP	ACAT2	ENST00000541436	human	ensembl	74_37	+1	known	missense	c.1226	p.A409V	0.397	pfam_Thiolase_C,superfamily_Thiolase-like,pirsf_Thiolase,tigrfam_Thiolase	pfam_Thiolase_N,pfam_Thiolase_C,superfamily_Thiolase-like,pirsf_Thiolase,tigrfam_Thiolase	-	no_errors	ACAT2	HGNC	ENSG00000120437				70	0	0	51	29	36.25
LPA	0	genome.wustl.edu	37	6	161027563	161027563	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	161027563	161027563	C	T	SNP	LPA	ENST00000316300	human	ensembl	74_37	-1	known	missense	c.2731	p.V911I	0.000	superfamily_Kringle-like	pfam_Kringle,pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_Kringle,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Kringle,pfscan_Peptidase_S1	-	no_errors	LPA	HGNC	ENSG00000198670				135	0	0	123	53	30.1136
PHF10	0	genome.wustl.edu	37	6	170118937	170118937	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	170118937	170118937	T	C	SNP	PHF10	ENST00000339209	human	ensembl	74_37	-1	known	missense	c.272	p.Q91R	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF10	HGNC	ENSG00000130024				66	0	0	67	26	27.957
SLC17A3	0	genome.wustl.edu	37	6	25862609	25862609	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	25862609	25862609	G	A	SNP	SLC17A3	ENST00000397060	human	ensembl	74_37	-1	known	missense	c.155	p.T52M	0.000	superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A3	HGNC	ENSG00000124564				107	0	0	82	44	34.9206
ABT1	0	genome.wustl.edu	37	6	26598515	26598515	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	26598515	26598515	C	T	SNP	ABT1	ENST00000274849	human	ensembl	74_37	+1	known	missense	c.461	p.S154F	0.996	NULL	NULL	-	no_errors	ABT1	HGNC	ENSG00000146109				96	0	0	75	29	27.8846
ZNF184	0	genome.wustl.edu	37	6	27419587	27419587	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	27419587	27419587	C	T	SNP	ZNF184	ENST00000211936	human	ensembl	74_37	-1	known	missense	c.1751	p.R584Q	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF184	HGNC	ENSG00000096654				70	0	0	60	31	34.0659
HIST1H3I	0	genome.wustl.edu	37	6	27839989	27839989	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	27839989	27839989	G	A	SNP	HIST1H3I	ENST00000328488	human	ensembl	74_37	-1	known	silent	c.105	p.G35	0.992	superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST1H3I	HGNC	ENSG00000182572				57	0	0	47	12	20.339
PGBD1	0	genome.wustl.edu	37	6	28251732	28251732	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	28251732	28251732	C	T	SNP	PGBD1	ENST00000259883	human	ensembl	74_37	+1	known	missense	c.142	p.R48W	0.923	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,pfscan_SRCR,pfscan_Tscrpt_reg_SCAN	-	no_errors	PGBD1	HGNC	ENSG00000137338				64	0	0	53	17	24.2857
LOC401242	0	genome.wustl.edu	37	6	28829774	28829774	+	RNA	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	28829774	28829774	G	A	SNP	LOC401242	ENST00000440244	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	XXbac-BPG308K3.6	Clone_based_vega_gene	ENSG00000225595				9	0	0	2	3	60
TRIM26	0	genome.wustl.edu	37	6	30154048	30154048	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	30154048	30154048	C	T	SNP	TRIM26	ENST00000437089	human	ensembl	74_37	-1	known	missense	c.1225	p.D409N	0.075	superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM26	HGNC	ENSG00000234127				26	0	0	27	12	30.7692
ABCF1	0	genome.wustl.edu	37	6	30554313	30554313	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	30554313	30554313	A	G	SNP	ABCF1	ENST00000326195	human	ensembl	74_37	+1	known	missense	c.1948	p.M650V	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCF1	HGNC	ENSG00000204574				143	0	0	124	54	30.3371
GTF2H4	0	genome.wustl.edu	37	6	30879001	30879001	+	Silent	SNP	G	G	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	30879001	30879001	G	T	SNP	GTF2H4	ENST00000259895	human	ensembl	74_37	+1	known	silent	c.627	p.P209	0.947	pfam_TFIIH_p52/Tfb2,tigrfam_TFIIH_p52/Tfb2	pfam_TFIIH_p52/Tfb2,tigrfam_TFIIH_p52/Tfb2	-	no_errors	GTF2H4	HGNC	ENSG00000213780				80	0	0	66	33	33.3333
TUBB2A	0	genome.wustl.edu	37	6	3154798	3154798	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	3154798	3154798	G	A	SNP	TUBB2A	ENST00000333628	human	ensembl	74_37	-1	known	missense	c.637	p.R213C	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Beta_tubulin,prints_Delta_tubulin,prints_Alpha_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB2A	HGNC	ENSG00000137267				111	0	0	68	46	40.3509
PRRC2A	0	genome.wustl.edu	37	6	31590652	31590652	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	31590652	31590652	A	C	SNP	PRRC2A	ENST00000376007	human	ensembl	74_37	+1	known	missense	c.86	p.K29T	1.000	pfam_BAT2_N	pfam_BAT2_N	-	no_errors	PRRC2A	HGNC	ENSG00000204469				156	0	0	112	63	36
PRRC2A	0	genome.wustl.edu	37	6	31597497	31597497	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	31597497	31597497	G	A	SNP	PRRC2A	ENST00000376007	human	ensembl	74_37	+1	known	missense	c.2129	p.R710Q	1.000	NULL	pfam_BAT2_N	-	no_errors	PRRC2A	HGNC	ENSG00000204469				16	0	0	16	5	23.8095
SAPCD1	0	genome.wustl.edu	37	6	31731318	31731318	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	31731318	31731318	G	A	SNP	SAPCD1	ENST00000415669	human	ensembl	74_37	+1	known	missense	c.241	p.G81R	0.998	pfam_APC_dom	pfam_APC_dom	-	no_errors	SAPCD1	HGNC	ENSG00000228727				48	0	0	39	11	22
SLC44A4	0	genome.wustl.edu	37	6	31833884	31833884	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	31833884	31833884	G	A	SNP	SLC44A4	ENST00000229729	human	ensembl	74_37	-1	known	missense	c.1253	p.S418L	0.962	pfam_Choline_transptr-like	pfam_Choline_transptr-like	-	no_errors	SLC44A4	HGNC	ENSG00000204385				92	0	0	69	36	34.2857
TNXB	0	genome.wustl.edu	37	6	32053800	32053800	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	32053800	32053800	G	A	SNP	TNXB	ENST00000375247	human	ensembl	74_37	-1	known	missense	c.2875	p.R959C	1.000	superfamily_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477				15	0	0	7	6	46.1538
EGFL8	0	genome.wustl.edu	37	6	32135153	32135153	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	32135153	32135153	G	A	SNP	EGFL8	ENST00000333845	human	ensembl	74_37	+1	known	missense	c.628	p.A210T	0.039	NULL	pfam_EMI_domain,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_EMI_domain	-	no_errors	EGFL8	HGNC	ENSG00000241404				37	0	0	18	10	35.7143
HLA-DRA	0	genome.wustl.edu	37	6	32411064	32411064	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	32411064	32411064	T	C	SNP	HLA-DRA	ENST00000395388	human	ensembl	74_37	+1	known	missense	c.431	p.V144A	0.991	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like_dom	pfam_MHC_II_a_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_a_N,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	HLA-DRA	HGNC	ENSG00000204287				92	0	0	71	27	27.551
TAP2	0	genome.wustl.edu	37	6	32802938	32802938	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	32802938	32802938	C	T	SNP	TAP2	ENST00000374897	human	ensembl	74_37	-1	known	missense	c.938	p.R313H	0.996	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom,prints_ABC_B3,tigrfam_Ag_transporter2	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_ABC_B3,prints_ABC_B2,tigrfam_Ag_transporter2	-	no_errors	TAP2	HGNC	ENSG00000204267				35	0	0	30	17	36.1702
COL11A2	0	genome.wustl.edu	37	6	33144778	33144778	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	33144778	33144778	G	A	SNP	COL11A2	ENST00000341947	human	ensembl	74_37	-1	known	silent	c.2061	p.D687	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A2	HGNC	ENSG00000204248				12	0	0	10	9	47.3684
DUSP22	0	genome.wustl.edu	37	6	348155	348155	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	348155	348155	G	A	SNP	DUSP22	ENST00000419235	human	ensembl	74_37	+1	known	missense	c.316	p.V106I	0.987	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	DUSP22	HGNC	ENSG00000112679				182	1	0.546448	152	32	17.3913
UHRF1BP1	0	genome.wustl.edu	37	6	34824039	34824039	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	34824039	34824039	C	T	SNP	UHRF1BP1	ENST00000192788	human	ensembl	74_37	+1	known	missense	c.1144	p.R382C	0.825	NULL	NULL	-	no_errors	UHRF1BP1	HGNC	ENSG00000065060				145	0	0	116	48	29.2683
UHRF1BP1	0	genome.wustl.edu	37	6	34825149	34825149	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	34825149	34825149	T	C	SNP	UHRF1BP1	ENST00000192788	human	ensembl	74_37	+1	known	missense	c.1475	p.L492P	0.999	NULL	NULL	-	no_errors	UHRF1BP1	HGNC	ENSG00000065060				85	0	0	60	22	26.8293
MDGA1	0	genome.wustl.edu	37	6	37619917	37619917	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	37619917	37619917	G	A	SNP	MDGA1	ENST00000297153	human	ensembl	74_37	-1	known	silent	c.1182	p.P394	0.013	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_MAM_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_MAM_dom,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Ig-like_dom	-	no_errors	MDGA1	HGNC	ENSG00000112139				43	0	0	37	13	26
ZFAND3	0	genome.wustl.edu	37	6	38120107	38120107	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	38120107	38120107	T	C	SNP	ZFAND3	ENST00000287218	human	ensembl	74_37	+1	known	missense	c.626	p.V209A	1.000	NULL	pfam_Znf_AN1,pfam_Znf_A20,smart_Znf_A20,smart_Znf_AN1,pfscan_Znf_A20,pfscan_Znf_AN1	-	no_errors	ZFAND3	HGNC	ENSG00000156639				83	0	0	51	17	25
DNAH8	0	genome.wustl.edu	37	6	38840746	38840746	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	38840746	38840746	C	T	SNP	DNAH8	ENST00000359357	human	ensembl	74_37	+1	known	silent	c.6651	p.S2217	0.689	pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721				69	0	0	43	21	32.8125
UBR2	0	genome.wustl.edu	37	6	42633221	42633221	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	42633221	42633221	A	G	SNP	UBR2	ENST00000372899	human	ensembl	74_37	+1	known	missense	c.3773	p.Q1258R	0.176	NULL	pfam_ClpS_core,pfam_Znf_N-recognin,superfamily_Ribosomal_L7/12_C/ClpS-like,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR2	HGNC	ENSG00000024048				94	0	0	61	28	31.4607
GLTSCR1L	0	genome.wustl.edu	37	6	42796237	42796237	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	42796237	42796237	G	A	SNP	GLTSCR1L	ENST00000314073	human	ensembl	74_37	+1	known	missense	c.166	p.D56N	1.000	NULL	NULL	-	no_errors	GLTSCR1L	HGNC	ENSG00000112624				47	0	0	43	19	30.6452
KLC4	0	genome.wustl.edu	37	6	43030725	43030725	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	43030725	43030725	G	A	SNP	KLC4	ENST00000259708	human	ensembl	74_37	+1	known	missense	c.383	p.R128Q	1.000	pfam_Rabaptin_Rab5-bd_dom,prints_Kinesin_light	pfam_Rabaptin_Rab5-bd_dom,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Kinesin_light	-	no_errors	KLC4	HGNC	ENSG00000137171				48	0	0	38	20	34.4828
CUL9	0	genome.wustl.edu	37	6	43152490	43152490	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	43152490	43152490	G	A	SNP	CUL9	ENST00000252050	human	ensembl	74_37	+1	known	missense	c.442	p.V148M	1.000	superfamily_ARM-type_fold	pfam_Cullin_N,pfam_CPH_domain,pfam_Znf_C6HC,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,superfamily_UBA-like,smart_Cullin_neddylation_domain,smart_Znf_C6HC,pfscan_Znf_RING,pfscan_Cullin_homology	-	no_errors	CUL9	HGNC	ENSG00000112659				55	0	0	47	25	34.7222
TDRD6	0	genome.wustl.edu	37	6	46656522	46656522	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	46656522	46656522	C	T	SNP	TDRD6	ENST00000316081	human	ensembl	74_37	+1	known	silent	c.657	p.S219	0.878	NULL	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD6	HGNC	ENSG00000180113				23	0	0	21	4	16
PTCHD4	0	genome.wustl.edu	37	6	47846191	47846191	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	47846191	47846191	G	T	SNP	PTCHD4	ENST00000339488	human	ensembl	74_37	-1	known	missense	c.2389	p.L797M	1.000	pfam_Patched	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD4	HGNC	ENSG00000244694				59	0	0	67	28	29.4737
KIAA1586	0	genome.wustl.edu	37	6	56919147	56919147	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	56919147	56919147	G	A	SNP	KIAA1586	ENST00000370733	human	ensembl	74_37	+1	known	missense	c.1850	p.R617H	0.011	superfamily_RNaseH-like_dom	superfamily_RNaseH-like_dom	-	no_errors	KIAA1586	HGNC	ENSG00000168116				52	0	0	51	21	29.1667
EXOC2	0	genome.wustl.edu	37	6	637806	637806	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	637806	637806	G	A	SNP	EXOC2	ENST00000230449	human	ensembl	74_37	-1	known	nonsense	c.13	p.R5*	0.968	superfamily_Ig_E-set	pfam_IPT,superfamily_Ig_E-set,superfamily_Cullin_repeat-like_dom	-	no_errors	EXOC2	HGNC	ENSG00000112685				102	0	0	71	38	34.8624
EYS	0	genome.wustl.edu	37	6	66045023	66045023	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	66045023	66045023	C	A	SNP	EYS	ENST00000370616	human	ensembl	74_37	-1	known	missense	c.1616	p.C539F	0.000	NULL	pfam_Laminin_G,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	EYS	HGNC	ENSG00000188107				72	0	0	41	28	40.5797
COL9A1	0	genome.wustl.edu	37	6	71011710	71011710	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	71011710	71011710	G	A	SNP	COL9A1	ENST00000357250	human	ensembl	74_37	-1	known	missense	c.82	p.R28C	0.974	NULL	pfam_Collagen,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	-	no_errors	COL9A1	HGNC	ENSG00000112280				11	0	0	14	10	41.6667
RREB1	0	genome.wustl.edu	37	6	7230050	7230050	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	7230050	7230050	C	T	SNP	RREB1	ENST00000379938	human	ensembl	74_37	+1	known	missense	c.1718	p.A573V	0.010	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RREB1	HGNC	ENSG00000124782				19	0	0	5	3	37.5
RIMS1	0	genome.wustl.edu	37	6	72678706	72678706	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	72678706	72678706	C	T	SNP	RIMS1	ENST00000521978	human	ensembl	74_37	+1	known	missense	c.185	p.A62V	1.000	superfamily_Znf_FYVE_PHD,pfscan_Znf_FYVE-typ	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS1	HGNC	ENSG00000079841				81	0	0	72	42	36.8421
KCNQ5	0	genome.wustl.edu	37	6	73902416	73902416	+	Splice_Site	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	73902416	73902416	T	C	SNP	KCNQ5	ENST00000402622	human	ensembl	74_37	+1	known	splice_site	c.1866+2	e13+2	1.000	-	-	-	no_errors	KCNQ5	HGNC	ENSG00000185760				82	0	0	84	8	8.69565
COL12A1	0	genome.wustl.edu	37	6	75814988	75814988	+	Silent	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	75814988	75814988	A	G	SNP	COL12A1	ENST00000322507	human	ensembl	74_37	-1	known	silent	c.8199	p.P2733	0.108	NULL	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799				29	0	0	27	4	12.9032
BMP6	0	genome.wustl.edu	37	6	7862635	7862635	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	7862635	7862635	G	A	SNP	BMP6	ENST00000283147	human	ensembl	74_37	+1	known	missense	c.1108	p.V370M	1.000	NULL	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	BMP6	HGNC	ENSG00000153162				41	0	0	35	11	23.913
ANKRD6	0	genome.wustl.edu	37	6	90340559	90340559	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	90340559	90340559	G	A	SNP	ANKRD6	ENST00000339746	human	ensembl	74_37	+1	known	missense	c.2020	p.A674T	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD6	HGNC	ENSG00000135299				50	0	0	33	12	26.6667
MDN1	0	genome.wustl.edu	37	6	90402442	90402442	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	90402442	90402442	G	A	SNP	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	missense	c.10307	p.A3436V	0.940	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				58	0	0	46	16	25.8065
EPHA7	0	genome.wustl.edu	37	6	93967182	93967182	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	93967182	93967182	T	C	SNP	EPHA7	ENST00000369303	human	ensembl	74_37	-1	known	missense	c.2170	p.R724G	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA7	HGNC	ENSG00000135333				34	0	0	37	14	27.451
KLHL32	0	genome.wustl.edu	37	6	97587132	97587132	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	97587132	97587132	C	T	SNP	KLHL32	ENST00000369261	human	ensembl	74_37	+1	known	missense	c.1837	p.P613S	1.000	NULL	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL32	HGNC	ENSG00000186231				81	0	0	81	47	36.7188
MMS22L	0	genome.wustl.edu	37	6	97711260	97711260	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	97711260	97711260	A	G	SNP	MMS22L	ENST00000275053	human	ensembl	74_37	-1	known	missense	c.893	p.V298A	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	MMS22L	HGNC	ENSG00000146263				82	0	0	76	32	29.6296
NYAP1	0	genome.wustl.edu	37	7	100087129	100087129	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	100087129	100087129	C	T	SNP	NYAP1	ENST00000423930	human	ensembl	74_37	+1	known	silent	c.1785	p.T595	0.853	NULL	NULL	-	no_errors	NYAP1	HGNC	ENSG00000166924				44	0	0	39	11	22
TFR2	0	genome.wustl.edu	37	7	100218519	100218519	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	100218519	100218519	C	T	SNP	TFR2	ENST00000223051	human	ensembl	74_37	-1	known	silent	c.2367	p.A789	0.675	pfam_TFR-like_dimer_dom,superfamily_TFR-like_dimer_dom	pfam_TFR-like_dimer_dom,pfam_Peptidase_M28,pfam_Protease-assoc_domain,superfamily_TFR-like_dimer_dom	-	no_errors	TFR2	HGNC	ENSG00000106327				33	0	0	30	18	37.5
TFR2	0	genome.wustl.edu	37	7	100226903	100226903	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	100226903	100226903	G	A	SNP	TFR2	ENST00000223051	human	ensembl	74_37	-1	known	missense	c.1363	p.R455W	0.377	pfam_Peptidase_M28	pfam_TFR-like_dimer_dom,pfam_Peptidase_M28,pfam_Protease-assoc_domain,superfamily_TFR-like_dimer_dom	-	no_errors	TFR2	HGNC	ENSG00000106327				64	0	0	47	15	24.1935
TRIP6	0	genome.wustl.edu	37	7	100468258	100468258	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	100468258	100468258	C	T	SNP	TRIP6	ENST00000200457	human	ensembl	74_37	+1	known	missense	c.892	p.R298C	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	TRIP6	HGNC	ENSG00000087077				60	0	0	30	16	34.7826
PIK3CG	0	genome.wustl.edu	37	7	106508373	106508373	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	106508373	106508373	C	T	SNP	PIK3CG	ENST00000359195	human	ensembl	74_37	+1	known	missense	c.367	p.R123C	0.674	NULL	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CG	HGNC	ENSG00000105851				22	0	0	23	9	28.125
PIK3CG	0	genome.wustl.edu	37	7	106523539	106523539	+	Silent	SNP	C	C	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	106523539	106523539	C	A	SNP	PIK3CG	ENST00000359195	human	ensembl	74_37	+1	known	silent	c.2691	p.G897	0.968	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CG	HGNC	ENSG00000105851				176	0	0	138	82	37.2727
COG5	0	genome.wustl.edu	37	7	107198538	107198538	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	107198538	107198538	G	A	SNP	COG5	ENST00000297135	human	ensembl	74_37	-1	known	silent	c.210	p.N70	0.346	pfam_Cog5	pfam_Cog5	-	no_errors	COG5	HGNC	ENSG00000164597				43	0	0	24	11	31.4286
DOCK4	0	genome.wustl.edu	37	7	111377033	111377033	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	111377033	111377033	T	C	SNP	DOCK4	ENST00000428084	human	ensembl	74_37	-1	known	missense	c.5245	p.N1749D	0.997	NULL	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK4	HGNC	ENSG00000128512				14	0	0	13	4	23.5294
FOXP2	0	genome.wustl.edu	37	7	114284763	114284763	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	114284763	114284763	C	T	SNP	FOXP2	ENST00000408937	human	ensembl	74_37	+1	known	missense	c.1088	p.A363V	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXP2	HGNC	ENSG00000128573				48	0	0	31	11	26.1905
ZNF800	0	genome.wustl.edu	37	7	127014061	127014061	+	Silent	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	127014061	127014061	T	C	SNP	ZNF800	ENST00000265827	human	ensembl	74_37	-1	known	silent	c.1329	p.T443	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF800	HGNC	ENSG00000048405				47	0	0	67	5	6.94444
LRRC4	0	genome.wustl.edu	37	7	127669841	127669841	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	127669841	127669841	G	T	SNP	LRRC4	ENST00000249363	human	ensembl	74_37	-1	known	missense	c.853	p.L285I	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRC4	HGNC	ENSG00000128594				60	0	0	48	22	31.4286
SND1	0	genome.wustl.edu	37	7	127732057	127732057	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	127732057	127732057	C	T	SNP	SND1	ENST00000354725	human	ensembl	74_37	+1	known	missense	c.2680	p.R894C	1.000	pfam_Staphylococal_nuclease_OB-fold,superfamily_Staphylococal_nuclease_OB-fold,pirsf_Silence_cplx_Nase-comp_TudorSN	pfam_Staphylococal_nuclease_OB-fold,pfam_Tudor,superfamily_Staphylococal_nuclease_OB-fold,smart_Staphylococal_nuclease_OB-fold,smart_Tudor,pirsf_Silence_cplx_Nase-comp_TudorSN,pfscan_Tudor,pfscan_Staphylococal_nuclease_OB-fold	-	no_errors	SND1	HGNC	ENSG00000197157				134	0	0	111	42	27.451
FLNC	0	genome.wustl.edu	37	7	128475506	128475506	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	128475506	128475506	C	T	SNP	FLNC	ENST00000325888	human	ensembl	74_37	+1	known	missense	c.479	p.T160M	1.000	superfamily_CH-domain,pfscan_CH-domain	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNC	HGNC	ENSG00000128591				106	0	0	60	38	38.7755
NRF1	0	genome.wustl.edu	37	7	129394908	129394908	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	129394908	129394908	G	A	SNP	NRF1	ENST00000393231	human	ensembl	74_37	+1	known	missense	c.1456	p.A486T	1.000	pfam_Nrf1_activation-bd	pfam_Nrf1_NLS/DNA-bd_dimer,pfam_Nrf1_activation-bd	-	no_errors	NRF1	HGNC	ENSG00000106459				69	0	0	48	25	34.2466
CPA5	0	genome.wustl.edu	37	7	129986353	129986353	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	129986353	129986353	G	A	SNP	CPA5	ENST00000355388	human	ensembl	74_37	+1	known	silent	c.27	p.T9	0.000	NULL	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPA5	HGNC	ENSG00000158525				42	0	0	27	20	42.5532
PLXNA4	0	genome.wustl.edu	37	7	131864546	131864546	+	Silent	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	131864546	131864546	A	G	SNP	PLXNA4	ENST00000321063	human	ensembl	74_37	-1	known	silent	c.3774	p.I1258	0.988	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA4	HGNC	ENSG00000221866				21	0	0	13	9	40.9091
WDR91	0	genome.wustl.edu	37	7	134871064	134871064	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	134871064	134871064	C	T	SNP	WDR91	ENST00000354475	human	ensembl	74_37	-1	known	missense	c.2083	p.G695S	0.998	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR91	HGNC	ENSG00000105875				25	0	0	12	8	40
NUP205	0	genome.wustl.edu	37	7	135277854	135277854	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	135277854	135277854	C	T	SNP	NUP205	ENST00000285968	human	ensembl	74_37	+1	known	missense	c.1744	p.R582C	1.000	pfam_Nup186/Nup192/Nup205	pfam_Nup186/Nup192/Nup205	-	no_errors	NUP205	HGNC	ENSG00000155561				123	0	0	105	38	26.5734
DGKI	0	genome.wustl.edu	37	7	137237203	137237203	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	137237203	137237203	C	A	SNP	DGKI	ENST00000288490	human	ensembl	74_37	-1	known	missense	c.2059	p.A687S	1.000	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	DGKI	HGNC	ENSG00000157680				141	0	0	114	57	33.3333
TMEM213	0	genome.wustl.edu	37	7	138522642	138522642	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	138522642	138522642	C	T	SNP	TMEM213	ENST00000413208	human	ensembl	74_37	+1	putative	silent	c.183	p.G61	0.000	NULL	NULL	-	no_errors	TMEM213	HGNC	ENSG00000214128				24	0	0	10	4	28.5714
KIAA1549	0	genome.wustl.edu	37	7	138554434	138554434	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	138554434	138554434	C	T	SNP	KIAA1549	ENST00000422774	human	ensembl	74_37	-1	known	missense	c.4625	p.R1542H	0.996	NULL	NULL	-	no_errors	KIAA1549	HGNC	ENSG00000122778				19	0	0	18	7	28
KIAA1549	0	genome.wustl.edu	37	7	138602725	138602725	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	138602725	138602725	C	T	SNP	KIAA1549	ENST00000422774	human	ensembl	74_37	-1	known	silent	c.1647	p.T549	0.000	NULL	NULL	-	no_errors	KIAA1549	HGNC	ENSG00000122778				21	0	0	22	9	29.0323
MKRN1	0	genome.wustl.edu	37	7	140158906	140158906	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	140158906	140158906	G	A	SNP	MKRN1	ENST00000255977	human	ensembl	74_37	-1	known	silent	c.672	p.Y224	0.046	pfam_Znf_CCCH,smart_Znf_CCCH	pfam_Znf_CCCH,pfam_Znf_C3HC4_RING-type,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	MKRN1	HGNC	ENSG00000133606				129	0	0	109	56	33.9394
DENND2A	0	genome.wustl.edu	37	7	140273680	140273680	+	Silent	SNP	G	G	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	140273680	140273680	G	T	SNP	DENND2A	ENST00000275884	human	ensembl	74_37	-1	known	silent	c.1374	p.P458	1.000	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND2A	HGNC	ENSG00000146966				163	1	0.609756	142	62	30.3922
CLCN1	0	genome.wustl.edu	37	7	143039045	143039045	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	143039045	143039045	G	A	SNP	CLCN1	ENST00000343257	human	ensembl	74_37	+1	known	missense	c.1606	p.V536I	1.000	pfam_Cl-channel_volt-gated,superfamily_Cl-channel_core,prints_Cl-channel_volt-gated	pfam_Cl-channel_volt-gated,pfam_CBS_dom,superfamily_Cl-channel_core,prints_Cl-channel_volt-gated,prints_Cl_channel-1	-	no_errors	CLCN1	HGNC	ENSG00000188037				48	0	0	42	12	22.2222
CNTNAP2	0	genome.wustl.edu	37	7	147914604	147914604	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	147914604	147914604	G	A	SNP	CNTNAP2	ENST00000361727	human	ensembl	74_37	+1	known	missense	c.3235	p.V1079I	0.955	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,pfam_EG-like_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP2	HGNC	ENSG00000174469				67	0	0	52	25	32.4675
ZNF282	0	genome.wustl.edu	37	7	148921287	148921287	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	148921287	148921287	G	A	SNP	ZNF282	ENST00000262085	human	ensembl	74_37	+1	known	missense	c.1564	p.E522K	0.052	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_DUF3669_Znf,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF282	HGNC	ENSG00000170265				27	0	0	13	6	31.5789
ZNF212	0	genome.wustl.edu	37	7	148947336	148947336	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	148947336	148947336	C	T	SNP	ZNF212	ENST00000335870	human	ensembl	74_37	+1	known	silent	c.111	p.T37	0.376	pfam_DUF3669_Znf	pfam_Znf_C2H2,pfam_DUF3669_Znf,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF212	HGNC	ENSG00000170260				72	0	0	49	25	33.7838
ZNF212	0	genome.wustl.edu	37	7	148951367	148951367	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	148951367	148951367	C	T	SNP	ZNF212	ENST00000335870	human	ensembl	74_37	+1	known	missense	c.1349	p.T450M	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_DUF3669_Znf,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF212	HGNC	ENSG00000170260				87	0	0	51	21	29.1667
KRBA1	0	genome.wustl.edu	37	7	149420936	149420936	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	149420936	149420936	G	A	SNP	KRBA1	ENST00000255992	human	ensembl	74_37	+1	known	missense	c.884	p.R295Q	0.000	NULL	NULL	-	no_errors	KRBA1	HGNC	ENSG00000133619				65	0	0	48	21	30.4348
SSPO	0	genome.wustl.edu	37	7	149522374	149522374	+	RNA	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	149522374	149522374	C	T	SNP	SSPO	ENST00000378016	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558				47	0	0	43	26	37.6812
CHPF2	0	genome.wustl.edu	37	7	150934480	150934480	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	150934480	150934480	C	T	SNP	CHPF2	ENST00000035307	human	ensembl	74_37	+1	known	silent	c.1032	p.T344	0.000	pfam_Chond_GalNAc	pfam_Chond_GalNAc,pfam_Fringe-like	-	no_errors	CHPF2	HGNC	ENSG00000033100				46	0	0	35	18	33.9623
CRYGN	0	genome.wustl.edu	37	7	151135154	151135154	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	151135154	151135154	G	A	SNP	CRYGN	ENST00000337323	human	ensembl	74_37	-1	known	silent	c.198	p.H66	0.999	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYGN	HGNC	ENSG00000127377				43	0	0	44	12	21.4286
GALNT11	0	genome.wustl.edu	37	7	151818747	151818747	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	151818747	151818747	G	A	SNP	GALNT11	ENST00000320311	human	ensembl	74_37	+1	known	nonsense	c.1812	p.W604*	1.000	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT11	HGNC	ENSG00000178234				67	0	0	59	34	36.5591
FABP5P3	0	genome.wustl.edu	37	7	152139985	152139985	+	RNA	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	152139985	152139985	C	T	SNP	FABP5P3	ENST00000477993	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.098	-	-	-	no_errors	FABP5P3	HGNC	ENSG00000241735				27	0	0	20	12	37.5
LOC100506302	0	genome.wustl.edu	37	7	155436217	155436217	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	155436217	155436217	T	C	SNP	LOC100506302	ENST00000401694	human	ensembl	74_37	-1	putative	missense	c.46	p.I16V	0.000	NULL	NULL	-	no_errors	AC009403.2	Clone_based_vega_gene	ENSG00000216895				28	0	0	16	8	33.3333
MNX1	0	genome.wustl.edu	37	7	156799214	156799214	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	156799214	156799214	G	A	SNP	MNX1	ENST00000252971	human	ensembl	74_37	-1	known	missense	c.811	p.R271C	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	MNX1	HGNC	ENSG00000130675				13	0	0	8	4	33.3333
TMEM184A	0	genome.wustl.edu	37	7	1587459	1587459	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	1587459	1587459	C	T	SNP	TMEM184A	ENST00000297477	human	ensembl	74_37	-1	known	missense	c.931	p.V311M	0.997	pfam_Ost-alpha	pfam_Ost-alpha	-	no_errors	TMEM184A	HGNC	ENSG00000164855				11	0	0	16	2	11.1111
DNAH11	0	genome.wustl.edu	37	7	21747335	21747335	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	21747335	21747335	C	T	SNP	DNAH11	ENST00000328843	human	ensembl	74_37	+1	known	nonsense	c.6586	p.R2196*	0.875	pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877				32	0	0	28	16	36.3636
IGF2BP3	0	genome.wustl.edu	37	7	23509592	23509592	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	23509592	23509592	G	A	SNP	IGF2BP3	ENST00000258729	human	ensembl	74_37	-1	known	silent	c.138	p.D46	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_KH_dom_type_1,pfam_RRM_dom,smart_RRM_dom,smart_KH_dom,pfscan_KH_dom_type_1,pfscan_RRM_dom	-	no_errors	IGF2BP3	HGNC	ENSG00000136231				34	0	0	25	16	39.0244
STK31	0	genome.wustl.edu	37	7	23811811	23811811	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	23811811	23811811	G	A	SNP	STK31	ENST00000355870	human	ensembl	74_37	+1	known	missense	c.1879	p.D627N	1.000	NULL	pfam_Tudor,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Tudor,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Tudor,pfscan_Prot_kinase_dom	-	no_errors	STK31	HGNC	ENSG00000196335				41	0	0	44	16	26.6667
EIF3B	0	genome.wustl.edu	37	7	2418871	2418871	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	2418871	2418871	C	T	SNP	EIF3B	ENST00000360876	human	ensembl	74_37	+1	known	nonsense	c.2335	p.R779*	0.454	pirsf_EIF3B	pfam_TIF_beta_prop-like,pfam_RRM_dom,smart_RRM_dom,pirsf_EIF3B,pfscan_RRM_dom	-	no_errors	EIF3B	HGNC	ENSG00000106263				22	0	0	26	8	23.5294
C7orf41	0	genome.wustl.edu	37	7	30185810	30185810	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	30185810	30185810	C	T	SNP	C7orf41	ENST00000324453	human	ensembl	74_37	+1	known	silent	c.180	p.S60	0.999	NULL	NULL	-	no_errors	C7orf41	HGNC	ENSG00000180354				63	0	0	35	12	25.5319
PDE1C	0	genome.wustl.edu	37	7	31890296	31890296	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	31890296	31890296	G	A	SNP	PDE1C	ENST00000321453	human	ensembl	74_37	-1	known	silent	c.810	p.Y270	0.965	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	pfam_PDEase_catalytic_dom,pfam_PDEase_N,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE1C	HGNC	ENSG00000154678				109	0	0	72	34	32.0755
GLI3	0	genome.wustl.edu	37	7	42005174	42005174	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	42005174	42005174	C	A	SNP	GLI3	ENST00000395925	human	ensembl	74_37	-1	known	missense	c.3497	p.S1166I	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI3	HGNC	ENSG00000106571				105	0	0	54	28	34.1463
GLI3	0	genome.wustl.edu	37	7	42012141	42012141	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	42012141	42012141	C	A	SNP	GLI3	ENST00000395925	human	ensembl	74_37	-1	known	missense	c.1898	p.G633V	1.000	pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI3	HGNC	ENSG00000106571				55	0	0	30	18	37.5
AEBP1	0	genome.wustl.edu	37	7	44151800	44151800	+	Silent	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	44151800	44151800	T	C	SNP	AEBP1	ENST00000223357	human	ensembl	74_37	+1	known	silent	c.2097	p.F699	0.998	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_CarboxyPept-like_regulatory,smart_Coagulation_fac_5/8-C_type_dom,smart_Peptidase_M14,pfscan_Coagulation_fac_5/8-C_type_dom,prints_Peptidase_M14	-	no_errors	AEBP1	HGNC	ENSG00000106624				65	0	0	44	28	38.8889
ZMIZ2	0	genome.wustl.edu	37	7	44806205	44806205	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	44806205	44806205	C	T	SNP	ZMIZ2	ENST00000309315	human	ensembl	74_37	+1	known	silent	c.2598	p.G866	0.955	NULL	pfam_Znf_MIZ,pfscan_Znf_MIZ	-	no_errors	ZMIZ2	HGNC	ENSG00000122515				41	0	0	36	7	16.2791
MYO1G	0	genome.wustl.edu	37	7	45016545	45016545	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	45016545	45016545	C	T	SNP	MYO1G	ENST00000258787	human	ensembl	74_37	-1	known	missense	c.221	p.R74Q	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO1G	HGNC	ENSG00000136286				52	0	0	28	18	39.1304
ABCA13	0	genome.wustl.edu	37	7	48411974	48411974	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	48411974	48411974	T	G	SNP	ABCA13	ENST00000435803	human	ensembl	74_37	+1	known	missense	c.11013	p.F3671L	0.922	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869				143	0	0	119	56	32
RNF216	0	genome.wustl.edu	37	7	5752364	5752364	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	5752364	5752364	T	C	SNP	RNF216	ENST00000389902	human	ensembl	74_37	-1	known	missense	c.1964	p.Y655C	1.000	smart_Znf_C6HC	smart_Znf_C6HC	-	no_errors	RNF216	HGNC	ENSG00000011275				25	0	0	25	8	24.2424
USP42	0	genome.wustl.edu	37	7	6178819	6178819	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	6178819	6178819	G	A	SNP	USP42	ENST00000306177	human	ensembl	74_37	+1	known	missense	c.650	p.S217N	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP42	HGNC	ENSG00000106346				8	0	0	14	5	26.3158
CYTH3	0	genome.wustl.edu	37	7	6210230	6210230	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	6210230	6210230	G	A	SNP	CYTH3	ENST00000350796	human	ensembl	74_37	-1	known	silent	c.759	p.D253	0.979	superfamily_Sec7_dom	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom	-	no_errors	CYTH3	HGNC	ENSG00000008256				48	0	0	22	10	31.25
CCT6P1	0	genome.wustl.edu	37	7	65222986	65222986	+	RNA	SNP	G	G	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	65222986	65222986	G	T	SNP	CCT6P1	ENST00000442266	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.996	-	-	-	no_errors	CCT6P1	HGNC	ENSG00000228409				15	0	0	12	6	33.3333
GTF2IRD1P1	0	genome.wustl.edu	37	7	66304612	66304612	+	RNA	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	66304612	66304612	C	T	SNP	GTF2IRD1P1	ENST00000457166	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.468	-	-	-	no_errors	GTF2IRD1P1	HGNC	ENSG00000230583				26	0	0	30	4	11.7647
AUTS2	0	genome.wustl.edu	37	7	70255840	70255840	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	70255840	70255840	C	T	SNP	AUTS2	ENST00000342771	human	ensembl	74_37	+1	known	missense	c.3638	p.P1213L	1.000	NULL	prints_AUTS2	-	no_errors	AUTS2	HGNC	ENSG00000158321				33	0	0	22	4	15.3846
MLXIPL	0	genome.wustl.edu	37	7	73011554	73011554	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	73011554	73011554	C	T	SNP	MLXIPL	ENST00000313375	human	ensembl	74_37	-1	known	missense	c.1561	p.A521T	0.143	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MLXIPL	HGNC	ENSG00000009950				9	0	0	5	3	37.5
GTF2I	0	genome.wustl.edu	37	7	74159243	74159243	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	74159243	74159243	G	A	SNP	GTF2I	ENST00000324896	human	ensembl	74_37	+1	known	missense	c.1897	p.V633I	1.000	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	-	no_errors	GTF2I	HGNC	ENSG00000077809				114	0	0	128	21	14.094
LOC541473	0	genome.wustl.edu	37	7	75023589	75023589	+	RNA	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	75023589	75023589	C	T	SNP	LOC541473	ENST00000275590	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.995	-	-	-	no_errors	AC006014.8	Clone_based_vega_gene	ENSG00000146722				69	0	0	54	34	38.6364
POM121C	0	genome.wustl.edu	37	7	75066870	75066870	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	75066870	75066870	C	T	SNP	POM121C	ENST00000257665	human	ensembl	74_37	-1	known	missense	c.1129	p.A377T	0.020	NULL	NULL	-	no_errors	POM121C	HGNC	ENSG00000135213				246	0	0	178	77	30.1961
SRCRB4D	0	genome.wustl.edu	37	7	76029799	76029799	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	76029799	76029799	G	A	SNP	SRCRB4D	ENST00000275560	human	ensembl	74_37	-1	known	silent	c.279	p.N93	0.519	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_SRCR	-	no_errors	SRCRB4D	HGNC	ENSG00000146700				9	0	0	6	8	57.1429
PCLO	0	genome.wustl.edu	37	7	82390067	82390067	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	82390067	82390067	G	T	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	missense	c.15176	p.S5059Y	0.999	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				24	0	0	19	16	45.7143
KIAA1324L	0	genome.wustl.edu	37	7	86522383	86522383	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	86522383	86522383	A	G	SNP	KIAA1324L	ENST00000450689	human	ensembl	74_37	-1	known	missense	c.2719	p.C907R	1.000	NULL	superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Growth_fac_rcpt_N_dom	-	no_errors	KIAA1324L	HGNC	ENSG00000164659				147	0	0	106	45	29.8013
SUN1	0	genome.wustl.edu	37	7	872217	872217	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	872217	872217	C	T	SNP	SUN1	ENST00000456758	human	ensembl	74_37	+1	known	missense	c.230	p.T77M	1.000	NULL	pfam_SUN1,pfam_Sad1_UNC_C	-	no_errors	SUN1	HGNC	ENSG00000164828				20	0	0	10	11	52.381
FZD1	0	genome.wustl.edu	37	7	90894471	90894471	+	Silent	SNP	G	G	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	90894471	90894471	G	T	SNP	FZD1	ENST00000287934	human	ensembl	74_37	+1	known	silent	c.276	p.P92	0.978	NULL	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD1	HGNC	ENSG00000157240				18	0	0	11	9	45
MTERF	0	genome.wustl.edu	37	7	91503750	91503750	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	91503750	91503750	C	T	SNP	MTERF	ENST00000351870	human	ensembl	74_37	-1	known	missense	c.358	p.V120M	1.000	pfam_Mit_transcrip_term-rel	pfam_Mit_transcrip_term-rel,smart_Mit_transcrip_term-rel	-	no_errors	MTERF	HGNC	ENSG00000127989				136	0	0	85	49	36.5672
COL1A2	0	genome.wustl.edu	37	7	94054966	94054966	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	94054966	94054966	C	T	SNP	COL1A2	ENST00000297268	human	ensembl	74_37	+1	known	silent	c.2826	p.P942	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fib_collagen_C	-	no_errors	COL1A2	HGNC	ENSG00000164692				48	0	0	38	13	25.4902
DLX6	0	genome.wustl.edu	37	7	96639132	96639132	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	96639132	96639132	C	T	SNP	DLX6	ENST00000518156	human	ensembl	74_37	+1	known	missense	c.655	p.R219C	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif,prints_Homeobox_metazoa	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	DLX6	HGNC	ENSG00000006377				87	0	0	75	30	28.5714
ZNF655	0	genome.wustl.edu	37	7	99159544	99159544	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	99159544	99159544	G	A	SNP	ZNF655	ENST00000320583	human	ensembl	74_37	+1	known	missense	c.170	p.R57H	0.935	NULL	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	-	no_errors	ZNF655	HGNC	ENSG00000197343				19	0	0	13	7	35
ZSCAN21	0	genome.wustl.edu	37	7	99654966	99654966	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	99654966	99654966	G	A	SNP	ZSCAN21	ENST00000292450	human	ensembl	74_37	+1	known	missense	c.337	p.A113T	0.051	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN21	HGNC	ENSG00000166529				46	0	0	34	14	29.1667
RP1L1	0	genome.wustl.edu	37	8	10467571	10467571	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	10467571	10467571	C	T	SNP	RP1L1	ENST00000382483	human	ensembl	74_37	-1	known	missense	c.4037	p.G1346E	0.000	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1L1	HGNC	ENSG00000183638				59	0	0	120	9	6.97674
RIMS2	0	genome.wustl.edu	37	8	104897787	104897787	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	104897787	104897787	C	T	SNP	RIMS2	ENST00000406091	human	ensembl	74_37	+1	known	silent	c.960	p.Y320	0.997	NULL	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS2	HGNC	ENSG00000176406				68	0	0	94	19	16.8142
RIMS2	0	genome.wustl.edu	37	8	104922390	104922390	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	104922390	104922390	T	G	SNP	RIMS2	ENST00000406091	human	ensembl	74_37	+1	known	missense	c.1653	p.H551Q	1.000	NULL	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS2	HGNC	ENSG00000176406				104	0	0	169	39	18.75
SOX7	0	genome.wustl.edu	37	8	10583476	10583476	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	10583476	10583476	G	A	SNP	SOX7	ENST00000553390	human	ensembl	74_37	-1	known	silent	c.1095	p.D365	0.494	pfam_Sox_C_TAD	pfam_Sox_C_TAD,pfam_G_patch_dom,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_HMG_box_dom	-	no_errors	SOX7	HGNC	ENSG00000171056				29	0	0	54	14	20.5882
OXR1	0	genome.wustl.edu	37	8	107691480	107691480	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	107691480	107691480	G	A	SNP	OXR1	ENST00000442977	human	ensembl	74_37	+1	known	missense	c.266	p.R89Q	1.000	NULL	pfam_TLDc,pfam_LysM_dom,pfam_GRAM,smart_LysM_dom,smart_TLDc	-	no_errors	OXR1	HGNC	ENSG00000164830				85	0	0	165	26	13.6126
XKR6	0	genome.wustl.edu	37	8	11058385	11058385	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	11058385	11058385	C	T	SNP	XKR6	ENST00000416569	human	ensembl	74_37	-1	known	missense	c.464	p.R155H	1.000	pfam_Transport_prot_XK	pfam_Transport_prot_XK	-	no_errors	XKR6	HGNC	ENSG00000171044				35	0	0	48	14	22.5806
MTMR9	0	genome.wustl.edu	37	8	11157593	11157593	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	11157593	11157593	A	G	SNP	MTMR9	ENST00000221086	human	ensembl	74_37	+1	known	missense	c.353	p.E118G	1.000	NULL	pfam_Myotubularin-like_Pase_dom	-	no_errors	MTMR9	HGNC	ENSG00000104643				150	0	0	263	59	18.323
FAM167A	0	genome.wustl.edu	37	8	11301555	11301555	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	11301555	11301555	C	T	SNP	FAM167A	ENST00000284486	human	ensembl	74_37	-1	known	nonsense	c.366	p.W122*	1.000	NULL	pfam_FAM167	-	no_errors	FAM167A	HGNC	ENSG00000154319				92	0	0	136	30	18.0723
CSMD3	0	genome.wustl.edu	37	8	113301668	113301668	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	113301668	113301668	C	T	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	missense	c.9074	p.R3025H	1.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				79	0	0	98	17	14.7826
CSMD3	0	genome.wustl.edu	37	8	113314034	113314034	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	113314034	113314034	T	A	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	missense	c.8428	p.T2810S	1.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				68	0	0	90	31	25.6198
GATA4	0	genome.wustl.edu	37	8	11615981	11615981	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	11615981	11615981	G	A	SNP	GATA4	ENST00000335135	human	ensembl	74_37	+1	known	silent	c.1326	p.A442	0.929	NULL	pfam_GATA_N,pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA_4/5/6,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA4	HGNC	ENSG00000136574				43	0	0	102	23	18.4
TRPS1	0	genome.wustl.edu	37	8	116617110	116617110	+	Silent	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	116617110	116617110	T	C	SNP	TRPS1	ENST00000395715	human	ensembl	74_37	-1	known	silent	c.1086	p.E362	0.991	smart_Znf_C2H2-like	pfam_Znf_GATA,smart_Znf_C2H2-like,smart_Znf_GATA,pfscan_Znf_C2H2,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	TRPS1	HGNC	ENSG00000104447				63	0	0	110	17	13.3858
RAD21	0	genome.wustl.edu	37	8	117866524	117866524	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	117866524	117866524	G	A	SNP	RAD21	ENST00000297338	human	ensembl	74_37	-1	known	missense	c.1121	p.S374F	1.000	NULL	pfam_Rad21_Rec8_N,pfam_Rad21/Rec8_C_eu,pfam_ScpA	-	no_errors	RAD21	HGNC	ENSG00000164754				66	0	0	85	19	18.2692
AARD	0	genome.wustl.edu	37	8	117950593	117950593	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	117950593	117950593	C	T	SNP	AARD	ENST00000378279	human	ensembl	74_37	+1	known	silent	c.111	p.F37	0.000	NULL	NULL	-	no_errors	AARD	HGNC	ENSG00000205002				15	0	0	22	4	15.3846
ENPP2	0	genome.wustl.edu	37	8	120583061	120583061	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	120583061	120583061	G	A	SNP	ENPP2	ENST00000259486	human	ensembl	74_37	-1	known	nonsense	c.1957	p.R653*	1.000	NULL	pfam_Phosphodiest/P_Trfase,pfam_Somatomedin_B_dom,pfam_DNA/RNA_non-sp_Endonuclease,superfamily_Alkaline_phosphatase_core,smart_Somatomedin_B_dom,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A,pfscan_Somatomedin_B_dom,prints_Somatomedin_B_chordata	-	no_errors	ENPP2	HGNC	ENSG00000136960				64	0	0	78	13	14.2857
TAF2	0	genome.wustl.edu	37	8	120754889	120754889	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	120754889	120754889	C	T	SNP	TAF2	ENST00000378164	human	ensembl	74_37	-1	known	silent	c.3222	p.S1074	0.920	NULL	pfam_Peptidase_M1_N,superfamily_ARM-type_fold	-	no_errors	TAF2	HGNC	ENSG00000064313				35	0	0	63	9	12.5
ATAD2	0	genome.wustl.edu	37	8	124335285	124335285	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	124335285	124335285	T	A	SNP	ATAD2	ENST00000287394	human	ensembl	74_37	-1	known	nonsense	c.4024	p.K1342*	0.942	NULL	pfam_ATPase_AAA_core,pfam_Bromodomain,superfamily_P-loop_NTPase,superfamily_Bromodomain,smart_AAA+_ATPase,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	ATAD2	HGNC	ENSG00000156802				33	0	0	46	9	16.3636
ANXA13	0	genome.wustl.edu	37	8	124707927	124707927	+	Splice_Site	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	124707927	124707927	C	T	SNP	ANXA13	ENST00000262219	human	ensembl	74_37	-1	known	splice_site	c.514+1	e6+1	0.998	-	-	-	no_errors	ANXA13	HGNC	ENSG00000104537				140	0	0	231	46	16.6065
FER1L6	0	genome.wustl.edu	37	8	125131185	125131185	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	125131185	125131185	A	T	SNP	FER1L6	ENST00000399018	human	ensembl	74_37	+1	known	missense	c.5390	p.N1797I	1.000	superfamily_ABC1_TM_dom	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_dom,superfamily_ABC1_TM_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	FER1L6	HGNC	ENSG00000214814				18	0	0	43	15	25.8621
KIAA0196	0	genome.wustl.edu	37	8	126079934	126079934	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	126079934	126079934	C	T	SNP	KIAA0196	ENST00000318410	human	ensembl	74_37	-1	known	missense	c.1178	p.R393H	1.000	pfam_WASH_strumpellin	pfam_WASH_strumpellin,superfamily_Ig_E-set	-	no_errors	KIAA0196	HGNC	ENSG00000164961				94	0	0	146	21	12.5749
ADCY8	0	genome.wustl.edu	37	8	131797706	131797706	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	131797706	131797706	G	A	SNP	ADCY8	ENST00000286355	human	ensembl	74_37	-1	known	nonsense	c.3076	p.R1026*	1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY8	HGNC	ENSG00000155897				40	0	0	80	17	17.5258
ADCY8	0	genome.wustl.edu	37	8	131848567	131848567	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	131848567	131848567	G	A	SNP	ADCY8	ENST00000286355	human	ensembl	74_37	-1	known	silent	c.2631	p.Y877	0.819	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY8	HGNC	ENSG00000155897				65	0	0	94	27	22.314
EFR3A	0	genome.wustl.edu	37	8	133008660	133008660	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	133008660	133008660	T	G	SNP	EFR3A	ENST00000254624	human	ensembl	74_37	+1	known	missense	c.2073	p.D691E	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	EFR3A	HGNC	ENSG00000132294				15	0	0	41	5	10.8696
TG	0	genome.wustl.edu	37	8	133894824	133894824	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	133894824	133894824	G	A	SNP	TG	ENST00000220616	human	ensembl	74_37	+1	known	missense	c.856	p.A286T	0.981	superfamily_Thyroglobulin_1,pirsf_Thyroglobulin	pfam_Thyroglobulin_1,pfam_CarbesteraseB,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	-	no_errors	TG	HGNC	ENSG00000042832				99	0	0	143	8	5.29801
WISP1	0	genome.wustl.edu	37	8	134237661	134237661	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	134237661	134237661	C	T	SNP	WISP1	ENST00000377862	human	ensembl	74_37	+1	known	missense	c.98	p.T33I	0.053	NULL	NULL	-	no_errors	WISP1	HGNC	ENSG00000104415				76	0	0	126	29	18.7097
COL22A1	0	genome.wustl.edu	37	8	139820047	139820047	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	139820047	139820047	C	A	SNP	COL22A1	ENST00000303045	human	ensembl	74_37	-1	known	missense	c.1458	p.M486I	0.564	NULL	pfam_Collagen,pfam_VWF_A,superfamily_ConA-like_lec_gl_sf,smart_VWF_A,smart_Laminin_G,pfscan_VWF_A	-	no_errors	COL22A1	HGNC	ENSG00000169436				104	0	0	155	39	20.1031
COL22A1	0	genome.wustl.edu	37	8	139890011	139890011	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	139890011	139890011	G	A	SNP	COL22A1	ENST00000303045	human	ensembl	74_37	-1	known	missense	c.640	p.R214W	0.985	smart_VWF_A	pfam_Collagen,pfam_VWF_A,superfamily_ConA-like_lec_gl_sf,smart_VWF_A,smart_Laminin_G,pfscan_VWF_A	-	no_errors	COL22A1	HGNC	ENSG00000169436				50	0	0	37	9	19.5652
PTK2	0	genome.wustl.edu	37	8	141753359	141753359	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	141753359	141753359	G	A	SNP	PTK2	ENST00000395218	human	ensembl	74_37	-1	known	nonsense	c.1705	p.R569*	0.989	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Focal_adhesion_kin_target_dom,pfam_Prot_kinase_dom,pfam_FERM_central,superfamily_Kinase-like_dom,superfamily_Focal_adhesion_kin_target_dom,superfamily_FERM_central,smart_Band_41_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PTK2	HGNC	ENSG00000169398				65	0	0	107	27	20.1493
DENND3	0	genome.wustl.edu	37	8	142176464	142176464	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	142176464	142176464	G	A	SNP	DENND3	ENST00000262585	human	ensembl	74_37	+1	known	missense	c.1489	p.A497T	0.000	NULL	pfam_DENN_dom,pfam_dDENN_dom,pfam_WD40_repeat,pfam_uDENN_dom,superfamily_WD40_repeat_dom,smart_DENN_dom,smart_dDENN_dom,smart_WD40_repeat,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_WD40_repeat_dom	-	no_errors	DENND3	HGNC	ENSG00000105339				57	0	0	70	15	17.6471
SLC45A4	0	genome.wustl.edu	37	8	142238339	142238339	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	142238339	142238339	C	T	SNP	SLC45A4	ENST00000024061	human	ensembl	74_37	-1	known	silent	c.27	p.G9	0.003	NULL	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A4	HGNC	ENSG00000022567				102	0	0	158	58	26.8519
MROH5	0	genome.wustl.edu	37	8	142517187	142517187	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	142517187	142517187	G	A	SNP	MROH5	ENST00000521053	human	ensembl	74_37	-1	known	silent	c.63	p.A21	0.183	NULL	NULL	-	no_errors	MROH5	HGNC	ENSG00000226807				51	0	0	60	6	9.09091
GPIHBP1	0	genome.wustl.edu	37	8	144295734	144295734	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	144295734	144295734	C	A	SNP	GPIHBP1	ENST00000330824	human	ensembl	74_37	+1	known	missense	c.90	p.D30E	0.000	NULL	pfam_LY6_UPAR	-	no_errors	GPIHBP1	HGNC	ENSG00000182851				9	0	0	22	9	29.0323
ZNF696	0	genome.wustl.edu	37	8	144375210	144375210	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	144375210	144375210	C	T	SNP	ZNF696	ENST00000330143	human	ensembl	74_37	+1	known	silent	c.39	p.S13	0.002	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF696	HGNC	ENSG00000185730				32	0	0	45	8	15.0943
EPPK1	0	genome.wustl.edu	37	8	144941617	144941617	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	144941617	144941617	G	A	SNP	EPPK1	ENST00000525985	human	ensembl	74_37	-1	known	silent	c.5805	p.A1935	0.039	pfam_Plectin_repeat,smart_Plectin_repeat	pfam_Plectin_repeat,smart_Plectin_repeat	-	no_errors	EPPK1	HGNC	ENSG00000227184				30	0	0	27	12	30.7692
PLEC	0	genome.wustl.edu	37	8	144998442	144998442	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	144998442	144998442	C	T	SNP	PLEC	ENST00000322810	human	ensembl	74_37	-1	known	silent	c.6066	p.A2022	0.885	NULL	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209				14	0	0	11	8	42.1053
SLC52A2	0	genome.wustl.edu	37	8	145583577	145583577	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	145583577	145583577	G	A	SNP	SLC52A2	ENST00000329994	human	ensembl	74_37	+1	known	missense	c.425	p.R142H	0.370	NULL	pfam_Endogenous_retrovirus_rcpt	-	no_errors	SLC52A2	HGNC	ENSG00000185803				122	0	0	168	45	21.1268
CPSF1	0	genome.wustl.edu	37	8	145621823	145621823	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	145621823	145621823	C	A	SNP	CPSF1	ENST00000349769	human	ensembl	74_37	-1	known	missense	c.2816	p.G939V	1.000	NULL	pfam_Cleavage/polyA-sp_fac_asu_C	-	no_errors	CPSF1	HGNC	ENSG00000071894				65	0	0	94	5	5.05051
ZNF34	0	genome.wustl.edu	37	8	145999196	145999196	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	145999196	145999196	G	A	SNP	ZNF34	ENST00000343459	human	ensembl	74_37	-1	known	nonsense	c.1138	p.R380*	0.002	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF34	HGNC	ENSG00000196378				53	0	0	82	21	20.3883
ZNF252P	0	genome.wustl.edu	37	8	146225011	146225011	+	RNA	SNP	G	G	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	146225011	146225011	G	T	SNP	ZNF252P	ENST00000426361	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.552	-	-	-	no_errors	ZNF252P	HGNC	ENSG00000196922				10	0	0	16	9	36
ZNF596	0	genome.wustl.edu	37	8	192901	192901	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	192901	192901	C	T	SNP	ZNF596	ENST00000308811	human	ensembl	74_37	+1	known	silent	c.27	p.F9	0.000	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF596	HGNC	ENSG00000172748				59	0	0	89	15	14.4231
DMTN	0	genome.wustl.edu	37	8	21929867	21929867	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	21929867	21929867	G	A	SNP	DMTN	ENST00000265800	human	ensembl	74_37	+1	known	missense	c.635	p.R212Q	0.860	NULL	pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin_headpiece,pfscan_Villin_headpiece	-	no_errors	DMTN	HGNC	ENSG00000158856				14	0	0	26	6	18.75
HR	0	genome.wustl.edu	37	8	21985180	21985180	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	21985180	21985180	G	A	SNP	HR	ENST00000381418	human	ensembl	74_37	-1	known	missense	c.775	p.R259W	0.148	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	HR	HGNC	ENSG00000168453				120	0	0	151	49	24.5
NKX3-1	0	genome.wustl.edu	37	8	23538896	23538896	+	Silent	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	23538896	23538896	T	C	SNP	NKX3-1	ENST00000380871	human	ensembl	74_37	-1	known	silent	c.543	p.R181	0.659	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	NKX3-1	HGNC	ENSG00000167034				93	0	0	142	31	17.9191
ADAMDEC1	0	genome.wustl.edu	37	8	24256965	24256965	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	24256965	24256965	C	A	SNP	ADAMDEC1	ENST00000256412	human	ensembl	74_37	+1	known	missense	c.989	p.P330Q	0.148	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B	-	no_errors	ADAMDEC1	HGNC	ENSG00000134028				94	0	0	138	23	14.2857
NEFM	0	genome.wustl.edu	37	8	24771893	24771893	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	24771893	24771893	G	A	SNP	NEFM	ENST00000221166	human	ensembl	74_37	+1	known	missense	c.587	p.R196H	1.000	pfam_IF	pfam_IF,pfam_Intermed_filament_DNA-bd,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	NEFM	HGNC	ENSG00000104722				26	0	0	34	8	19.0476
DOCK5	0	genome.wustl.edu	37	8	25246735	25246735	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	25246735	25246735	G	A	SNP	DOCK5	ENST00000276440	human	ensembl	74_37	+1	known	silent	c.4260	p.S1420	0.118	NULL	pfam_DOCK_C,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK5	HGNC	ENSG00000147459				83	0	0	124	31	20
PNMA2	0	genome.wustl.edu	37	8	26365705	26365705	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	26365705	26365705	C	T	SNP	PNMA2	ENST00000522362	human	ensembl	74_37	-1	known	silent	c.567	p.T189	0.593	NULL	pfam_Retrotrans_gag_dom	-	no_errors	PNMA2	HGNC	ENSG00000240694				56	0	0	104	13	11.1111
PTK2B	0	genome.wustl.edu	37	8	27297938	27297938	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	27297938	27297938	C	T	SNP	PTK2B	ENST00000346049	human	ensembl	74_37	+1	known	silent	c.2019	p.T673	0.001	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Focal_adhesion_kin_target_dom,pfam_Prot_kinase_dom,pfam_FERM_central,superfamily_Kinase-like_dom,superfamily_Focal_adhesion_kin_target_dom,superfamily_FERM_central,smart_Band_41_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PTK2B	HGNC	ENSG00000120899				51	0	0	75	6	7.40741
EXTL3	0	genome.wustl.edu	37	8	28574843	28574843	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	28574843	28574843	G	A	SNP	EXTL3	ENST00000220562	human	ensembl	74_37	+1	known	missense	c.1267	p.E423K	0.998	pfam_Exostosin	pfam_HexNAc_Trfase_a,pfam_Exostosin	-	no_errors	EXTL3	HGNC	ENSG00000012232				60	0	0	73	16	17.9775
DUSP4	0	genome.wustl.edu	37	8	29195944	29195944	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	29195944	29195944	G	A	SNP	DUSP4	ENST00000240100	human	ensembl	74_37	-1	known	silent	c.654	p.D218	0.994	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pirsf_MKP,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,smart_Tyr_Pase_cat,pirsf_MKP,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP	-	no_errors	DUSP4	HGNC	ENSG00000120875				46	0	0	62	11	15.0685
WRN	0	genome.wustl.edu	37	8	30999110	30999110	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	30999110	30999110	G	A	SNP	WRN	ENST00000298139	human	ensembl	74_37	+1	known	silent	c.3132	p.T1044	0.000	pfam_RQC_domain,smart_RQC_domain	pfam_3'-5'_exonuclease_dom,pfam_Helicase_C,pfam_RQC_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_HRDC_dom,superfamily_P-loop_NTPase,superfamily_RNaseH-like_dom,superfamily_HRDC-like,smart_3'-5'_exonuclease_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_RQC_domain,smart_HRDC_dom,pfscan_HRDC_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	WRN	HGNC	ENSG00000165392				73	0	0	113	20	15.0376
GPR124	0	genome.wustl.edu	37	8	37689008	37689008	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	37689008	37689008	C	T	SNP	GPR124	ENST00000412232	human	ensembl	74_37	+1	known	nonsense	c.1000	p.Q334*	1.000	smart_Ig_sub,pfscan_GPCR_2_extracellular_dom,pfscan_Ig-like_dom	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,pfscan_GPS_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,pfscan_Ig-like_dom	-	no_errors	GPR124	HGNC	ENSG00000020181				44	0	0	64	10	13.5135
BRF2	0	genome.wustl.edu	37	8	37702376	37702376	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	37702376	37702376	C	T	SNP	BRF2	ENST00000220659	human	ensembl	74_37	-1	known	missense	c.892	p.G298S	0.759	NULL	pfam_Znf_TFIIB,superfamily_Cyclin-like,pfscan_Znf_TFIIB	-	no_errors	BRF2	HGNC	ENSG00000104221				51	0	0	83	19	18.6275
BAG4	0	genome.wustl.edu	37	8	38066655	38066655	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	38066655	38066655	G	A	SNP	BAG4	ENST00000287322	human	ensembl	74_37	+1	known	missense	c.758	p.G253D	0.341	NULL	pfam_BAG_domain,smart_BAG_domain,pfscan_BAG_domain	-	no_errors	BAG4	HGNC	ENSG00000156735				27	0	0	54	7	11.4754
HTRA4	0	genome.wustl.edu	37	8	38835575	38835575	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	38835575	38835575	C	T	SNP	HTRA4	ENST00000302495	human	ensembl	74_37	+1	known	missense	c.875	p.A292V	1.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,prints_Peptidase_S1C	pfam_Peptidase_S1,pfam_PDZ,pfam_Kazal_dom,superfamily_Trypsin-like_Pept_dom,superfamily_PDZ,smart_Kazal_dom,smart_PDZ,pfscan_PDZ,prints_Peptidase_S1C	-	no_errors	HTRA4	HGNC	ENSG00000169495				57	0	0	72	27	27.2727
FBXO25	0	genome.wustl.edu	37	8	400034	400034	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	400034	400034	C	T	SNP	FBXO25	ENST00000276326	human	ensembl	74_37	+1	known	silent	c.426	p.G142	0.997	NULL	superfamily_F-box_dom	-	no_errors	FBXO25	HGNC	ENSG00000147364				114	0	0	187	43	18.6957
IKBKB	0	genome.wustl.edu	37	8	42176093	42176093	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	42176093	42176093	G	A	SNP	IKBKB	ENST00000520810	human	ensembl	74_37	+1	known	missense	c.1264	p.A422T	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IKKbetaNEMObind,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ubiquitin_supergroup,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	IKBKB	HGNC	ENSG00000104365				58	0	0	103	24	18.8976
HOOK3	0	genome.wustl.edu	37	8	42828458	42828458	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	42828458	42828458	C	T	SNP	HOOK3	ENST00000307602	human	ensembl	74_37	+1	known	silent	c.1149	p.S383	0.973	pfam_Hook-related_fam	pfam_Hook-related_fam,superfamily_t-SNARE	-	no_errors	HOOK3	HGNC	ENSG00000168172				42	0	0	85	23	21.2963
MCM4	0	genome.wustl.edu	37	8	48887498	48887498	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	48887498	48887498	G	A	SNP	MCM4	ENST00000262105	human	ensembl	74_37	+1	known	missense	c.2341	p.V781M	1.000	superfamily_P-loop_NTPase	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_NA-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_4,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM4	HGNC	ENSG00000104738				81	0	0	125	22	14.966
PXDNL	0	genome.wustl.edu	37	8	52321164	52321164	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	52321164	52321164	G	A	SNP	PXDNL	ENST00000356297	human	ensembl	74_37	-1	known	missense	c.3020	p.A1007V	0.840	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,prints_Haem_peroxidase_animal_subgr,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDNL	HGNC	ENSG00000147485				18	0	0	22	8	26.6667
SOX17	0	genome.wustl.edu	37	8	55370898	55370898	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	55370898	55370898	G	A	SNP	SOX17	ENST00000297316	human	ensembl	74_37	+1	known	missense	c.200	p.R67H	0.999	superfamily_HMG_box_dom,smart_HMG_box_dom	pfam_Sox_C_TAD,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX17	HGNC	ENSG00000164736				34	0	0	35	8	18.6047
XKR4	0	genome.wustl.edu	37	8	56015724	56015724	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	56015724	56015724	G	A	SNP	XKR4	ENST00000327381	human	ensembl	74_37	+1	known	missense	c.676	p.A226T	0.811	pfam_Transport_prot_XK	pfam_Transport_prot_XK	-	no_errors	XKR4	HGNC	ENSG00000206579				39	0	0	40	12	23.0769
YTHDF3	0	genome.wustl.edu	37	8	64122306	64122306	+	RNA	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	64122306	64122306	T	C	SNP	YTHDF3	ENST00000517303	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	YTHDF3	HGNC	ENSG00000185728				15	0	0	21	5	19.2308
PDE7A	0	genome.wustl.edu	37	8	66639133	66639133	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	66639133	66639133	G	T	SNP	PDE7A	ENST00000401827	human	ensembl	74_37	-1	known	missense	c.897	p.F299L	1.000	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE7A	HGNC	ENSG00000205268				106	0	0	171	45	20.8333
CSPP1	0	genome.wustl.edu	37	8	67998286	67998286	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	67998286	67998286	C	T	SNP	CSPP1	ENST00000262210	human	ensembl	74_37	+1	known	missense	c.352	p.R118W	0.991	NULL	NULL	-	no_errors	CSPP1	HGNC	ENSG00000104218				91	0	0	150	31	17.1271
PREX2	0	genome.wustl.edu	37	8	68989660	68989660	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	68989660	68989660	T	A	SNP	PREX2	ENST00000288368	human	ensembl	74_37	+1	known	missense	c.1598	p.M533K	1.000	pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889				79	0	0	120	26	17.8082
PREX2	0	genome.wustl.edu	37	8	69017427	69017427	+	RNA	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	69017427	69017427	C	T	SNP	PREX2	ENST00000529398	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PREX2	HGNC	ENSG00000046889				116	0	0	178	40	18.3486
PREX2	0	genome.wustl.edu	37	8	69046300	69046300	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	69046300	69046300	A	G	SNP	PREX2	ENST00000288368	human	ensembl	74_37	+1	known	missense	c.3773	p.E1258G	1.000	NULL	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889				51	0	0	73	20	21.5054
PREX2	0	genome.wustl.edu	37	8	69046345	69046345	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	69046345	69046345	C	T	SNP	PREX2	ENST00000288368	human	ensembl	74_37	+1	known	missense	c.3818	p.A1273V	1.000	NULL	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889				62	0	0	92	21	18.5841
C8orf34	0	genome.wustl.edu	37	8	69351816	69351816	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	69351816	69351816	A	G	SNP	C8orf34	ENST00000518698	human	ensembl	74_37	+1	known	missense	c.410	p.N137S	0.253	superfamily_cAMP_dep_PK_reg_su_I/II_a/b	superfamily_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	C8orf34	HGNC	ENSG00000165084				67	0	0	80	35	30.4348
SULF1	0	genome.wustl.edu	37	8	70501233	70501233	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	70501233	70501233	C	T	SNP	SULF1	ENST00000260128	human	ensembl	74_37	+1	known	silent	c.591	p.N197	1.000	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	pfam_Sulfatase,pfam_Extracellular_sulfatase_C,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	-	no_errors	SULF1	HGNC	ENSG00000137573				60	0	0	89	19	17.5926
SULF1	0	genome.wustl.edu	37	8	70517125	70517125	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	70517125	70517125	C	T	SNP	SULF1	ENST00000260128	human	ensembl	74_37	+1	known	silent	c.1335	p.C445	1.000	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	pfam_Sulfatase,pfam_Extracellular_sulfatase_C,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	-	no_errors	SULF1	HGNC	ENSG00000137573				71	0	0	115	18	13.5338
SULF1	0	genome.wustl.edu	37	8	70536319	70536319	+	Silent	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	70536319	70536319	A	G	SNP	SULF1	ENST00000260128	human	ensembl	74_37	+1	known	silent	c.1737	p.E579	0.695	pfam_Extracellular_sulfatase_C,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	pfam_Sulfatase,pfam_Extracellular_sulfatase_C,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	-	no_errors	SULF1	HGNC	ENSG00000137573				45	0	0	63	6	8.69565
EYA1	0	genome.wustl.edu	37	8	72229848	72229848	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	72229848	72229848	G	A	SNP	EYA1	ENST00000465115	human	ensembl	74_37	-1	known	missense	c.413	p.A138V	1.000	NULL	NULL	-	no_errors	EYA1	HGNC	ENSG00000104313				177	0	0	214	51	19.2453
STAU2	0	genome.wustl.edu	37	8	74464497	74464497	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	74464497	74464497	C	T	SNP	STAU2	ENST00000524300	human	ensembl	74_37	-1	known	missense	c.1280	p.R427H	1.000	NULL	pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,pfscan_dsRNA-bd_dom	-	no_errors	STAU2	HGNC	ENSG00000040341				58	0	0	85	19	18.2692
ZNF704	0	genome.wustl.edu	37	8	81555314	81555314	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	81555314	81555314	C	T	SNP	ZNF704	ENST00000327835	human	ensembl	74_37	-1	known	silent	c.1083	p.A361	0.000	NULL	pfscan_Znf_C2H2	-	no_errors	ZNF704	HGNC	ENSG00000164684				40	0	0	71	6	7.79221
SGK223	0	genome.wustl.edu	37	8	8233918	8233918	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	8233918	8233918	C	T	SNP	SGK223	ENST00000330777	human	ensembl	74_37	-1	known	silent	c.2001	p.T667	0.244	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	SGK223	Uniprot_gn	ENSG00000182319				56	0	0	115	20	14.8148
ATP6V0D2	0	genome.wustl.edu	37	8	87111213	87111213	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	87111213	87111213	C	T	SNP	ATP6V0D2	ENST00000285393	human	ensembl	74_37	+1	known	silent	c.6	p.L2	0.000	pirsf_ATPase_V0-cplx_dsu	pfam_ATPase_V0-cplx_csu/dsu,superfamily_ATPase_V0-cplx_csu/dsu,pirsf_ATPase_V0-cplx_dsu	-	no_errors	ATP6V0D2	HGNC	ENSG00000147614				75	0	0	113	29	20.4225
MFHAS1	0	genome.wustl.edu	37	8	8747883	8747883	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	8747883	8747883	C	T	SNP	MFHAS1	ENST00000276282	human	ensembl	74_37	-1	known	missense	c.2686	p.A896T	1.000	NULL	pfam_Leu-rich_rpt,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	MFHAS1	HGNC	ENSG00000147324				65	0	0	105	30	22.2222
DCAF4L2	0	genome.wustl.edu	37	8	88885164	88885164	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	88885164	88885164	C	T	SNP	DCAF4L2	ENST00000319675	human	ensembl	74_37	-1	known	missense	c.1036	p.G346S	0.693	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF4L2	HGNC	ENSG00000176566				44	0	0	68	14	17.0732
RIPK2	0	genome.wustl.edu	37	8	90796355	90796355	+	Silent	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	90796355	90796355	T	C	SNP	RIPK2	ENST00000220751	human	ensembl	74_37	+1	known	silent	c.1017	p.H339	0.156	pirsf_Rcpt-int_Ser/Thr_kinase-2	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_CARD,superfamily_Kinase-like_dom,superfamily_DEATH-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Rcpt-int_Ser/Thr_kinase-2,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_CARD,pfscan_Prot_kinase_dom	-	no_errors	RIPK2	HGNC	ENSG00000104312				29	0	0	54	14	20.5882
KIAA1429	0	genome.wustl.edu	37	8	95538496	95538496	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	95538496	95538496	A	T	SNP	KIAA1429	ENST00000297591	human	ensembl	74_37	-1	known	missense	c.1976	p.I659N	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	KIAA1429	HGNC	ENSG00000164944				80	0	0	112	28	20
UQCRB	0	genome.wustl.edu	37	8	97243341	97243341	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	97243341	97243341	G	A	SNP	UQCRB	ENST00000287022	human	ensembl	74_37	-1	known	missense	c.278	p.P93L	1.000	pfam_QCR7,superfamily_QCR7	pfam_QCR7,superfamily_QCR7	-	no_errors	UQCRB	HGNC	ENSG00000156467				94	0	0	170	42	19.8113
GABBR2	0	genome.wustl.edu	37	9	101304194	101304194	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	101304194	101304194	G	A	SNP	GABBR2	ENST00000259455	human	ensembl	74_37	-1	known	silent	c.591	p.R197	0.816	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_GPCR_3	pfam_GPCR_3_C,pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_GPCR_3_GABA_rcpt_B2,prints_GPCR_3_GABA_rcpt_B,prints_GPCR_3_GABA_rcpt_B1,prints_GPCR_3,pfscan_GPCR_3_C	-	no_errors	GABBR2	HGNC	ENSG00000136928				56	0	0	74	19	20.4301
ANKS6	0	genome.wustl.edu	37	9	101536250	101536250	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	101536250	101536250	G	A	SNP	ANKS6	ENST00000375018	human	ensembl	74_37	-1	known	missense	c.1730	p.T577M	0.390	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SAM_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,prints_Ankyrin_rpt	-	no_errors	ANKS6	HGNC	ENSG00000165138				46	0	0	45	16	26.2295
COL15A1	0	genome.wustl.edu	37	9	101832036	101832036	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	101832036	101832036	G	A	SNP	COL15A1	ENST00000375001	human	ensembl	74_37	+1	known	silent	c.4035	p.A1345	0.000	pfam_Collagenase_NC10/endostatin,superfamily_C-type_lectin_fold	pfam_Collagenase_NC10/endostatin,pfam_Collagen,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	-	no_errors	COL15A1	HGNC	ENSG00000204291				104	0	0	125	39	23.7805
INVS	0	genome.wustl.edu	37	9	103035177	103035177	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	103035177	103035177	G	T	SNP	INVS	ENST00000262457	human	ensembl	74_37	+1	known	nonsense	c.1603	p.E535*	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_IQ_motif_EF-hand-BS,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,smart_IQ_motif_EF-hand-BS,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Ankyrin_rpt	-	no_errors	INVS	HGNC	ENSG00000119509				218	0	0	248	85	25.5255
SMC2	0	genome.wustl.edu	37	9	106876290	106876290	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	106876290	106876290	G	A	SNP	SMC2	ENST00000286398	human	ensembl	74_37	+1	known	missense	c.1460	p.R487H	0.996	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase,superfamily_SMC_hinge	pfam_RecF/RecN/SMC_N,pfam_SMC_hinge,superfamily_P-loop_NTPase,superfamily_SMC_hinge,smart_SMC_hinge	-	no_errors	SMC2	HGNC	ENSG00000136824				147	0	0	212	61	22.3443
KLF4	0	genome.wustl.edu	37	9	110249320	110249320	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	110249320	110249320	C	T	SNP	KLF4	ENST00000374672	human	ensembl	74_37	-1	known	missense	c.1253	p.R418Q	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF4	HGNC	ENSG00000136826				174	0	0	202	62	23.4848
EPB41L4B	0	genome.wustl.edu	37	9	112015826	112015826	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	112015826	112015826	G	A	SNP	EPB41L4B	ENST00000374566	human	ensembl	74_37	-1	known	missense	c.1174	p.R392W	0.952	pfam_FERM-adjacent	pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L4B	HGNC	ENSG00000095203				60	0	0	76	21	21.6495
PALM2-AKAP2	0	genome.wustl.edu	37	9	112687354	112687354	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	112687354	112687354	C	T	SNP	PALM2-AKAP2	ENST00000374530	human	ensembl	74_37	+1	known	missense	c.386	p.T129M	0.940	NULL	pfam_Paralemmin,pfam_RII_binding_1	-	no_errors	PALM2-AKAP2	HGNC	ENSG00000157654				62	0	0	93	32	25.6
RGS3	0	genome.wustl.edu	37	9	116359161	116359161	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	116359161	116359161	G	A	SNP	RGS3	ENST00000350696	human	ensembl	74_37	+1	known	silent	c.3525	p.S1175	0.794	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	pfam_RGS_dom,pfam_C2_dom,pfam_PDZ,superfamily_Regulat_G_prot_signal_superfam,superfamily_C2_dom,superfamily_PDZ,smart_C2_dom,smart_PDZ,smart_Regulat_G_prot_signal_superfam,pfscan_C2_dom,pfscan_PDZ,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS3	HGNC	ENSG00000138835				81	0	0	93	27	22.5
TNFSF8	0	genome.wustl.edu	37	9	117692480	117692480	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	117692480	117692480	C	A	SNP	TNFSF8	ENST00000223795	human	ensembl	74_37	-1	known	missense	c.104	p.S35I	0.814	pirsf_TNF_CD30_ligand_type	pfam_TNF_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_TNF_dom,pirsf_TNF_CD30_ligand_type,pfscan_TNF_dom	-	no_errors	TNFSF8	HGNC	ENSG00000106952				60	0	0	76	27	26.2136
TNC	0	genome.wustl.edu	37	9	117853061	117853061	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	117853061	117853061	C	T	SNP	TNC	ENST00000350763	human	ensembl	74_37	-1	known	silent	c.237	p.P79	0.000	NULL	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNC	HGNC	ENSG00000041982				155	0	0	164	58	26.1261
ASTN2	0	genome.wustl.edu	37	9	119737508	119737508	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	119737508	119737508	G	A	SNP	ASTN2	ENST00000313400	human	ensembl	74_37	-1	known	missense	c.1868	p.T623M	1.000	NULL	pfam_MACPF,superfamily_Fibronectin_type3,smart_MACPF	-	no_errors	ASTN2	HGNC	ENSG00000148219				66	0	0	88	5	5.37634
ASTN2	0	genome.wustl.edu	37	9	120053685	120053685	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	120053685	120053685	C	G	SNP	ASTN2	ENST00000313400	human	ensembl	74_37	-1	known	missense	c.550	p.A184P	1.000	NULL	pfam_MACPF,superfamily_Fibronectin_type3,smart_MACPF	-	no_errors	ASTN2	HGNC	ENSG00000148219				61	0	0	42	16	27.5862
DENND1A	0	genome.wustl.edu	37	9	126146185	126146185	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	126146185	126146185	G	A	SNP	DENND1A	ENST00000394219	human	ensembl	74_37	-1	known	missense	c.1618	p.P540S	1.000	NULL	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND1A	HGNC	ENSG00000119522				63	0	0	66	13	16.4557
OLFML2A	0	genome.wustl.edu	37	9	127561749	127561749	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	127561749	127561749	G	A	SNP	OLFML2A	ENST00000373580	human	ensembl	74_37	+1	known	silent	c.648	p.T216	0.000	NULL	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFML2A	HGNC	ENSG00000185585				12	0	0	9	6	40
GOLGA1	0	genome.wustl.edu	37	9	127652731	127652731	+	Silent	SNP	C	C	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	127652731	127652731	C	A	SNP	GOLGA1	ENST00000373555	human	ensembl	74_37	-1	known	silent	c.1434	p.V478	0.994	NULL	pfam_GRIP,superfamily_Prefoldin,superfamily_GRIP,smart_GRIP,pfscan_GRIP	-	no_errors	GOLGA1	HGNC	ENSG00000136935				75	0	0	59	29	32.9545
SCAI	0	genome.wustl.edu	37	9	127818218	127818218	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	127818218	127818218	C	A	SNP	SCAI	ENST00000373549	human	ensembl	74_37	-1	known	missense	c.236	p.R79M	1.000	pirsf_UCP013022	pfam_DUF3550,pirsf_UCP013022	-	no_errors	SCAI	HGNC	ENSG00000173611				43	0	0	56	22	28.2051
RABEPK	0	genome.wustl.edu	37	9	127982827	127982827	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	127982827	127982827	C	T	SNP	RABEPK	ENST00000373538	human	ensembl	74_37	+1	known	missense	c.374	p.T125M	0.021	NULL	pfam_Kelch_2,pfam_Kelch_1	-	no_errors	RABEPK	HGNC	ENSG00000136933				54	0	0	51	21	29.1667
HSPA5	0	genome.wustl.edu	37	9	127998919	127998919	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	127998919	127998919	G	A	SNP	HSPA5	ENST00000324460	human	ensembl	74_37	-1	known	silent	c.1917	p.G639	1.000	NULL	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA5	HGNC	ENSG00000044574				58	0	0	69	22	24.1758
ZBTB43	0	genome.wustl.edu	37	9	129595780	129595780	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	129595780	129595780	A	G	SNP	ZBTB43	ENST00000373457	human	ensembl	74_37	+1	known	missense	c.992	p.D331G	0.912	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB43	HGNC	ENSG00000169155				79	0	0	85	33	27.9661
ANGPTL2	0	genome.wustl.edu	37	9	129870416	129870416	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	129870416	129870416	G	A	SNP	ANGPTL2	ENST00000373425	human	ensembl	74_37	-1	known	nonsense	c.595	p.Q199*	0.983	NULL	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	ANGPTL2	HGNC	ENSG00000136859				32	0	0	37	9	19.5652
RPL12	0	genome.wustl.edu	37	9	130210644	130210644	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	130210644	130210644	C	T	SNP	RPL12	ENST00000361436	human	ensembl	74_37	-1	known	silent	c.351	p.R117	0.924	pfam_Ribosomal_L11_C,superfamily_Ribosomal_L11_C,smart_Ribosomal_L11	pfam_Ribosomal_L11_N,pfam_Ribosomal_L11_C,superfamily_Ribosomal_L11_N,superfamily_Ribosomal_L11_C,smart_Ribosomal_L11	-	no_errors	RPL12	HGNC	ENSG00000197958				188	0	0	224	60	21.1268
SH2D3C	0	genome.wustl.edu	37	9	130507045	130507045	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	130507045	130507045	G	A	SNP	SH2D3C	ENST00000314830	human	ensembl	74_37	-1	known	missense	c.1598	p.A533V	0.000	NULL	pfam_SH2,pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_SH2,smart_RasGRF_CDC25,pfscan_SH2,pfscan_RasGRF_CDC25	-	no_errors	SH2D3C	HGNC	ENSG00000095370				189	0	0	264	14	5.03597
LRRC8A	0	genome.wustl.edu	37	9	131670129	131670129	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	131670129	131670129	C	T	SNP	LRRC8A	ENST00000259324	human	ensembl	74_37	+1	known	missense	c.686	p.T229M	0.999	NULL	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8A	HGNC	ENSG00000136802				40	0	0	29	20	40.8163
NUP188	0	genome.wustl.edu	37	9	131755602	131755602	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	131755602	131755602	A	G	SNP	NUP188	ENST00000372577	human	ensembl	74_37	+1	known	missense	c.2767	p.T923A	1.000	pfam_Nucleoporin_Nup188,superfamily_ARM-type_fold	pfam_Nucleoporin_Nup188,superfamily_ARM-type_fold	-	no_errors	NUP188	HGNC	ENSG00000095319				76	0	0	94	8	7.84314
NTNG2	0	genome.wustl.edu	37	9	135073517	135073517	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	135073517	135073517	G	A	SNP	NTNG2	ENST00000360670	human	ensembl	74_37	+1	known	silent	c.378	p.S126	0.999	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_Laminin_N,pfam_EGF_laminin,pfam_EGF_extracell,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	NTNG2	HGNC	ENSG00000196358				30	0	0	32	17	34.6939
SARDH	0	genome.wustl.edu	37	9	136536721	136536721	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	136536721	136536721	C	T	SNP	SARDH	ENST00000371872	human	ensembl	74_37	-1	known	silent	c.2262	p.A754	0.014	pfam_GCV_T_N	pfam_FAD-dep_OxRdtase,pfam_GCV_T_N,pfam_GCV_T_C	-	no_errors	SARDH	HGNC	ENSG00000123453				11	0	0	15	3	16.6667
VAV2	0	genome.wustl.edu	37	9	136660824	136660824	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	136660824	136660824	C	A	SNP	VAV2	ENST00000371850	human	ensembl	74_37	-1	known	missense	c.1067	p.R356M	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_SH3_2,pfam_CAMSAP_CH,pfam_SH3_domain,pfam_SH2,pfam_CH-domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,smart_SH2,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain,prints_SH2,prints_SH3_domain	-	no_errors	VAV2	HGNC	ENSG00000160293				79	0	0	66	29	30.5263
COL5A1	0	genome.wustl.edu	37	9	137674515	137674515	+	Silent	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	137674515	137674515	T	C	SNP	COL5A1	ENST00000371817	human	ensembl	74_37	+1	known	silent	c.2433	p.G811	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A1	HGNC	ENSG00000130635				125	0	0	166	10	5.68182
FCN1	0	genome.wustl.edu	37	9	137803098	137803098	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	137803098	137803098	C	T	SNP	FCN1	ENST00000371806	human	ensembl	74_37	-1	known	missense	c.614	p.R205H	0.944	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	pfam_Fibrinogen_a/b/g_C_dom,pfam_Collagen,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	FCN1	HGNC	ENSG00000085265				180	0	0	212	69	24.5552
LHX3	0	genome.wustl.edu	37	9	139092502	139092502	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	139092502	139092502	G	A	SNP	LHX3	ENST00000371746	human	ensembl	74_37	-1	known	silent	c.192	p.S64	0.999	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LHX3	HGNC	ENSG00000107187				41	0	0	40	7	14.8936
PMPCA	0	genome.wustl.edu	37	9	139310805	139310805	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	139310805	139310805	C	T	SNP	PMPCA	ENST00000371717	human	ensembl	74_37	+1	known	missense	c.595	p.P199S	1.000	pfam_Pept_M16_N,superfamily_Metalloenz_LuxS/M16	pfam_Pept_M16_N,pfam_Peptidase_M16_C,superfamily_Metalloenz_LuxS/M16	-	no_errors	PMPCA	HGNC	ENSG00000165688				56	0	0	74	20	21.2766
INPP5E	0	genome.wustl.edu	37	9	139328514	139328514	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	139328514	139328514	C	T	SNP	INPP5E	ENST00000371712	human	ensembl	74_37	-1	known	missense	c.1009	p.G337R	0.937	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	-	no_errors	INPP5E	HGNC	ENSG00000148384				13	0	0	15	4	21.0526
LCN10	0	genome.wustl.edu	37	9	139635288	139635288	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	139635288	139635288	G	A	SNP	LCN10	ENST00000497771	human	ensembl	74_37	-1	known	missense	c.475	p.H159Y	0.956	superfamily_Calycin-like	superfamily_Calycin-like	-	no_errors	LCN10	HGNC	ENSG00000187922				22	0	0	47	9	16.0714
ANAPC2	0	genome.wustl.edu	37	9	140079368	140079368	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	140079368	140079368	G	A	SNP	ANAPC2	ENST00000323927	human	ensembl	74_37	-1	known	nonsense	c.1045	p.R349*	1.000	NULL	pfam_Cullin_N,pfam_APC_su2_C,superfamily_Cullin_homology,smart_Cullin_homology,pfscan_Cullin_homology	-	no_errors	ANAPC2	HGNC	ENSG00000176248				17	0	0	28	7	20
ENTPD8	0	genome.wustl.edu	37	9	140331728	140331728	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	140331728	140331728	G	A	SNP	ENTPD8	ENST00000371506	human	ensembl	74_37	-1	known	missense	c.278	p.A93V	0.000	pfam_GDA1_CD39_NTPase	pfam_GDA1_CD39_NTPase	-	no_errors	ENTPD8	HGNC	ENSG00000188833				44	0	0	62	14	18.4211
NSMF	0	genome.wustl.edu	37	9	140347017	140347017	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	140347017	140347017	C	T	SNP	NSMF	ENST00000371475	human	ensembl	74_37	-1	known	missense	c.1153	p.E385K	1.000	NULL	superfamily_P-loop_NTPase	-	no_errors	NSMF	HGNC	ENSG00000165802				44	0	0	46	15	24.5902
PNPLA7	0	genome.wustl.edu	37	9	140392668	140392668	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	140392668	140392668	A	G	SNP	PNPLA7	ENST00000406427	human	ensembl	74_37	-1	known	missense	c.1787	p.L596P	1.000	superfamily_cNMP-bd-like,smart_cNMP-bd_dom	pfam_cNMP-bd_dom,pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	PNPLA7	HGNC	ENSG00000130653				54	0	0	59	16	21.3333
EHMT1	0	genome.wustl.edu	37	9	140676805	140676805	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	140676805	140676805	G	A	SNP	EHMT1	ENST00000460843	human	ensembl	74_37	+1	known	missense	c.2338	p.A780T	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SET_dom,pfam_Pre-SET_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,prints_Ankyrin_rpt	-	no_errors	EHMT1	HGNC	ENSG00000181090				24	0	0	16	6	27.2727
CACNA1B	0	genome.wustl.edu	37	9	140772539	140772539	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	140772539	140772539	C	T	SNP	CACNA1B	ENST00000371355	human	ensembl	74_37	+1	known	missense	c.154	p.R52C	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_N_a1su,prints_PKD_2	-	no_errors	CACNA1B	HGNC	ENSG00000148408				12	0	0	18	5	21.7391
SMARCA2	0	genome.wustl.edu	37	9	2054701	2054701	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	2054701	2054701	G	A	SNP	SMARCA2	ENST00000349721	human	ensembl	74_37	+1	known	missense	c.1151	p.R384Q	1.000	NULL	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_P-loop_NTPase,superfamily_Bromodomain,superfamily_RNaseH-like_dom,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	SMARCA2	HGNC	ENSG00000080503				71	0	0	91	27	22.8814
C9orf66	0	genome.wustl.edu	37	9	214857	214857	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	214857	214857	C	T	SNP	C9orf66	ENST00000382387	human	ensembl	74_37	-1	known	silent	c.540	p.A180	0.003	NULL	NULL	-	no_errors	C9orf66	HGNC	ENSG00000183784				18	0	0	27	7	20.5882
TEK	0	genome.wustl.edu	37	9	27206739	27206739	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	27206739	27206739	C	T	SNP	TEK	ENST00000380036	human	ensembl	74_37	+1	known	missense	c.2524	p.R842C	0.957	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Tyr_kin_Tie2_Ig-like_dom-1_N,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TEK	HGNC	ENSG00000120156				41	0	0	43	19	30.6452
KIAA1161	0	genome.wustl.edu	37	9	34371530	34371530	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	34371530	34371530	G	A	SNP	KIAA1161	ENST00000297625	human	ensembl	74_37	-1	known	missense	c.1310	p.P437L	1.000	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	-	no_errors	KIAA1161	HGNC	ENSG00000164976				10	0	0	11	5	31.25
FAM221B	0	genome.wustl.edu	37	9	35825359	35825359	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	35825359	35825359	G	A	SNP	FAM221B	ENST00000423537	human	ensembl	74_37	-1	known	missense	c.610	p.R204C	0.001	NULL	NULL	-	no_errors	FAM221B	HGNC	ENSG00000204930				68	0	0	93	32	25.6
CCIN	0	genome.wustl.edu	37	9	36171031	36171031	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	36171031	36171031	G	A	SNP	CCIN	ENST00000335119	human	ensembl	74_37	+1	known	missense	c.1532	p.C511Y	1.000	NULL	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	CCIN	HGNC	ENSG00000185972				76	0	0	92	29	23.9669
ZCCHC7	0	genome.wustl.edu	37	9	37126308	37126308	+	Splice_Site	SNP	G	G	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	37126308	37126308	G	T	SNP	ZCCHC7	ENST00000336755	human	ensembl	74_37	+1	known	splice_site	c.1-1	e1-1	0.998	-	-	-	no_errors	ZCCHC7	HGNC	ENSG00000147905				104	0	0	133	27	16.875
FRMPD1	0	genome.wustl.edu	37	9	37745690	37745690	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	37745690	37745690	G	A	SNP	FRMPD1	ENST00000377765	human	ensembl	74_37	+1	known	missense	c.3661	p.V1221I	0.001	NULL	pfam_FERM_central,pfam_PDZ,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ	-	no_errors	FRMPD1	HGNC	ENSG00000070601				105	0	0	116	26	18.3099
CNTNAP3B	0	genome.wustl.edu	37	9	43822677	43822677	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	43822677	43822677	G	A	SNP	CNTNAP3B	ENST00000377564	human	ensembl	74_37	+1	known	missense	c.1231	p.E411K	0.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP3B	HGNC	ENSG00000154529				34	0	0	60	6	9.09091
LOC100996870	0	genome.wustl.edu	37	9	66459863	66459863	+	RNA	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	66459863	66459863	G	A	SNP	LOC100996870	ENST00000424345	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.135	-	-	-	no_errors	RP11-262H14.1	Clone_based_vega_gene	ENSG00000238113				33	0	0	42	5	10.6383
LOC100996870	0	genome.wustl.edu	37	9	66469045	66469045	+	RNA	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	66469045	66469045	A	G	SNP	LOC100996870	ENST00000424345	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.024	-	-	-	no_errors	RP11-262H14.1	Clone_based_vega_gene	ENSG00000238113				11	0	0	12	3	20
PGM5	0	genome.wustl.edu	37	9	70993121	70993121	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	70993121	70993121	C	T	SNP	PGM5	ENST00000396396	human	ensembl	74_37	+1	known	nonsense	c.268	p.R90*	0.949	pfam_A-D-PHexomutase_a/b/a-I,superfamily_A-D-PHexomutase_a/b/a-I/II/III	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-III,pfam_A-D-PHexomutase_a/b/a-II,superfamily_A-D-PHexomutase_a/b/a-I/II/III,prints_Alpha-D-phosphohexomutase_SF	-	no_errors	PGM5	HGNC	ENSG00000154330				66	0	0	145	9	5.84416
PGM5	0	genome.wustl.edu	37	9	70993153	70993153	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	70993153	70993153	G	A	SNP	PGM5	ENST00000396396	human	ensembl	74_37	+1	known	silent	c.300	p.S100	0.985	pfam_A-D-PHexomutase_a/b/a-I,superfamily_A-D-PHexomutase_a/b/a-I/II/III	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-III,pfam_A-D-PHexomutase_a/b/a-II,superfamily_A-D-PHexomutase_a/b/a-I/II/III,prints_Alpha-D-phosphohexomutase_SF	-	no_errors	PGM5	HGNC	ENSG00000154330				49	0	0	104	7	6.30631
C9orf41	0	genome.wustl.edu	37	9	77598694	77598694	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	77598694	77598694	T	C	SNP	C9orf41	ENST00000376834	human	ensembl	74_37	-1	known	missense	c.1219	p.K407E	1.000	pfam_N2227	pfam_N2227	-	no_errors	C9orf41	HGNC	ENSG00000156017				42	0	0	59	14	19.1781
PCSK5	0	genome.wustl.edu	37	9	78710821	78710821	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	78710821	78710821	G	A	SNP	PCSK5	ENST00000545128	human	ensembl	74_37	+1	known	missense	c.910	p.G304S	1.000	pfam_Peptidase_S8/S53_dom,superfamily_Peptidase_S8/S53_dom	pfam_Peptidase_S8/S53_dom,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53_dom,superfamily_Galactose-bd-like,superfamily_Growth_fac_rcpt_N_dom,superfamily_Prot_inh_propept,smart_Furin_repeat,smart_EG-like_dom,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK5	HGNC	ENSG00000099139				86	0	0	83	26	23.8532
PCSK5	0	genome.wustl.edu	37	9	78973724	78973724	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	78973724	78973724	C	T	SNP	PCSK5	ENST00000545128	human	ensembl	74_37	+1	known	silent	c.5469	p.I1823	0.104	NULL	pfam_Peptidase_S8/S53_dom,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53_dom,superfamily_Galactose-bd-like,superfamily_Growth_fac_rcpt_N_dom,superfamily_Prot_inh_propept,smart_Furin_repeat,smart_EG-like_dom,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK5	HGNC	ENSG00000099139				190	0	0	260	84	24.4186
SPATA31D1	0	genome.wustl.edu	37	9	84609582	84609582	+	Silent	SNP	T	T	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	84609582	84609582	T	G	SNP	SPATA31D1	ENST00000344803	human	ensembl	74_37	+1	known	silent	c.4197	p.T1399	0.000	NULL	NULL	-	no_errors	SPATA31D1	HGNC	ENSG00000214929				30	0	0	46	14	23.3333
AGTPBP1	0	genome.wustl.edu	37	9	88248234	88248234	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	88248234	88248234	C	T	SNP	AGTPBP1	ENST00000376109	human	ensembl	74_37	-1	known	missense	c.1394	p.R465H	0.007	NULL	pfam_Peptidase_M14,superfamily_ARM-type_fold	-	no_errors	AGTPBP1	HGNC	ENSG00000135049				78	0	0	102	39	27.6596
SHC3	0	genome.wustl.edu	37	9	91680487	91680487	+	Silent	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	91680487	91680487	A	G	SNP	SHC3	ENST00000375835	human	ensembl	74_37	-1	known	silent	c.792	p.T264	0.992	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom,prints_PID_Shc-like	pfam_PTB/PI_dom,pfam_SH2,smart_PTB/PI_dom,smart_SH2,pfscan_PTB/PI_dom,pfscan_SH2,prints_PID_Shc-like,prints_SH2	-	no_errors	SHC3	HGNC	ENSG00000148082				218	0	0	282	78	21.6667
SYK	0	genome.wustl.edu	37	9	93606314	93606314	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	93606314	93606314	G	A	SNP	SYK	ENST00000375746	human	ensembl	74_37	+1	known	missense	c.134	p.R45H	1.000	pfam_SH2,smart_SH2,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,pfscan_SH2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,superfamily_Kinase-like_dom,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,pfscan_SH2,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	SYK	HGNC	ENSG00000165025				20	0	0	17	3	15
AUH	0	genome.wustl.edu	37	9	93983200	93983200	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	93983200	93983200	C	T	SNP	AUH	ENST00000375731	human	ensembl	74_37	-1	known	missense	c.730	p.D244N	1.000	pfam_Crotonase_core_superfam	pfam_Crotonase_core_superfam	-	no_errors	AUH	HGNC	ENSG00000148090				72	0	0	89	9	9.18367
ROR2	0	genome.wustl.edu	37	9	94495598	94495598	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	94495598	94495598	G	A	SNP	ROR2	ENST00000375708	human	ensembl	74_37	-1	known	missense	c.743	p.P248L	0.989	pirsf_Tyr_kinase_rcpt_ROR,pfam_Frizzled_dom,superfamily_Frizzled_dom,pfscan_Frizzled_dom	pirsf_Tyr_kinase_rcpt_ROR,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Kringle,pfam_Frizzled_dom,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Kringle-like,superfamily_Frizzled_dom,smart_Ig_sub,smart_Ig_sub2,smart_Kringle,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Frizzled_dom,pfscan_Kringle,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	ROR2	HGNC	ENSG00000169071				13	0	0	19	8	29.6296
PHF2	0	genome.wustl.edu	37	9	96428129	96428129	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	96428129	96428129	C	T	SNP	PHF2	ENST00000359246	human	ensembl	74_37	+1	known	missense	c.2099	p.P700L	0.751	NULL	pfam_JmjC_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF2	HGNC	ENSG00000197724				121	0	0	146	41	21.9251
ZNF169	0	genome.wustl.edu	37	9	97062823	97062823	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	97062823	97062823	G	A	SNP	ZNF169	ENST00000395395	human	ensembl	74_37	+1	known	missense	c.983	p.R328H	0.001	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF169	HGNC	ENSG00000175787				91	0	0	153	17	10
HIATL1	0	genome.wustl.edu	37	9	97203311	97203311	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	97203311	97203311	C	T	SNP	HIATL1	ENST00000375344	human	ensembl	74_37	+1	known	missense	c.440	p.T147M	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Tet-R_TetA/multi-R_MdtG	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Tet-R_TetA/multi-R_MdtG	-	no_errors	HIATL1	HGNC	ENSG00000148110				60	0	0	61	20	24.6914
FBP1	0	genome.wustl.edu	37	9	97382707	97382707	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	97382707	97382707	G	A	SNP	FBP1	ENST00000375326	human	ensembl	74_37	-1	known	silent	c.237	p.N79	0.971	pfam_FBPase_class-1/SBPase,pfam_Inositol_monophosphatase,prints_FBPtase,prints_SBPase	pfam_FBPase_class-1/SBPase,pfam_Inositol_monophosphatase,prints_FBPtase,prints_SBPase	-	no_errors	FBP1	HGNC	ENSG00000165140				57	0	0	63	16	20.2532
ZNF510	0	genome.wustl.edu	37	9	99521928	99521928	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	99521928	99521928	C	T	SNP	ZNF510	ENST00000223428	human	ensembl	74_37	-1	known	missense	c.1184	p.R395Q	0.971	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF510	HGNC	ENSG00000081386				104	0	0	131	47	26.4045
MT-RNR2	0	genome.wustl.edu	37	MT	2449	2449	+	RNA	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	MT	2449	2449	G	A	SNP	MT-RNR2	ENST00000387347	human	ensembl	74_37	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors	MT-RNR2	HGNC	ENSG00000210082				763	0	0	613	435	41.5076
MT-ATP6	0	genome.wustl.edu	37	MT	9090	9090	+	Silent	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	MT	9090	9090	T	C	SNP	MT-ATP6	ENST00000361899	human	ensembl	74_37	+1	known	silent	c.564	p.S188	NULL	pfam_ATPase_F0-cplx_asu,superfamily_ATPase_F0-cplx_asu,tigrfam_ATPase_F0-cplx_asu	pfam_ATPase_F0-cplx_asu,superfamily_ATPase_F0-cplx_asu,prints_ATPase_F0-cplx_asu,tigrfam_ATPase_F0-cplx_asu	-	no_errors	MT-ATP6	HGNC	ENSG00000198899				914	1	0.10929	1093	416	27.5679
XKRX	0	genome.wustl.edu	37	X	100169452	100169452	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	100169452	100169452	G	A	SNP	XKRX	ENST00000328526	human	ensembl	74_37	-1	known	missense	c.1264	p.R422C	1.000	NULL	pfam_Transport_prot_XK	-	no_errors	XKRX	HGNC	ENSG00000182489				194	0	0	163	52	24.186
CENPI	0	genome.wustl.edu	37	X	100387216	100387216	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	100387216	100387216	G	A	SNP	CENPI	ENST00000372927	human	ensembl	74_37	+1	known	missense	c.1325	p.S442N	1.000	pfam_CENP-I	pfam_CENP-I	-	no_errors	CENPI	HGNC	ENSG00000102384				169	0	0	151	72	32.287
HNRNPH2	0	genome.wustl.edu	37	X	100667790	100667790	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	100667790	100667790	T	G	SNP	HNRNPH2	ENST00000316594	human	ensembl	74_37	+1	known	missense	c.814	p.S272A	1.000	pfam_Znf_CHHC	pfam_RRM_dom,pfam_Znf_CHHC,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPH2	HGNC	ENSG00000126945				63	0	0	72	11	13.253
NXF5	0	genome.wustl.edu	37	X	101095488	101095488	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	101095488	101095488	G	A	SNP	NXF5	ENST00000263032	human	ensembl	74_37	-1	known	silent	c.681	p.D227	0.999	NULL	pfam_Tap_RNA-bd	-	no_errors	NXF5	HGNC	ENSG00000126952				70	0	0	56	29	34.1176
ZMAT1	0	genome.wustl.edu	37	X	101138866	101138866	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	101138866	101138866	G	A	SNP	ZMAT1	ENST00000372782	human	ensembl	74_37	-1	known	silent	c.1533	p.Y511	0.949	NULL	superfamily_Asn/Gln_tRNA_amidoTrfrase-rel,smart_Znf_U1,smart_Znf_C2H2-like	-	no_errors	ZMAT1	HGNC	ENSG00000166432				60	0	0	38	15	28.3019
FAM199X	0	genome.wustl.edu	37	X	103434329	103434329	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	103434329	103434329	G	A	SNP	FAM199X	ENST00000493442	human	ensembl	74_37	+1	known	missense	c.1037	p.R346H	1.000	NULL	NULL	-	no_errors	FAM199X	HGNC	ENSG00000123575				112	0	0	112	62	35.6322
NRK	0	genome.wustl.edu	37	X	105153047	105153047	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	105153047	105153047	C	T	SNP	NRK	ENST00000428173	human	ensembl	74_37	+1	known	missense	c.1417	p.R473W	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Citron,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom	-	no_errors	NRK	HGNC	ENSG00000123572				53	0	0	32	14	30.4348
CXorf57	0	genome.wustl.edu	37	X	105865880	105865880	+	Splice_Site	SNP	G	G	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	105865880	105865880	G	C	SNP	CXorf57	ENST00000372548	human	ensembl	74_37	+1	known	splice_site	c.644-1	e2-1	1.000	-	-	-	no_errors	CXorf57	HGNC	ENSG00000147231				53	0	0	42	19	31.1475
FRMPD3	0	genome.wustl.edu	37	X	106844964	106844964	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	106844964	106844964	C	T	SNP	FRMPD3	ENST00000276185	human	ensembl	74_37	+1	known	missense	c.3794	p.T1265I	1.000	NULL	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ	-	no_errors	FRMPD3	HGNC	ENSG00000147234				72	0	0	60	26	30.2326
IRS4	0	genome.wustl.edu	37	X	107978724	107978724	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	107978724	107978724	C	T	SNP	IRS4	ENST00000372129	human	ensembl	74_37	-1	known	missense	c.851	p.R284H	1.000	pfam_Insln_rcpt_S1,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1,prints_Insln_rcpt_S1	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1,prints_Insln_rcpt_S1	-	no_errors	IRS4	HGNC	ENSG00000133124				136	0	0	80	47	37.0079
CHRDL1	0	genome.wustl.edu	37	X	109964646	109964646	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	109964646	109964646	C	T	SNP	CHRDL1	ENST00000372042	human	ensembl	74_37	-1	known	silent	c.414	p.R138	1.000	pfam_VWF_C,smart_VWF_C,pfscan_VWF_C	pfam_VWF_C,smart_VWF_C,pfscan_VWF_C	-	no_errors	CHRDL1	HGNC	ENSG00000101938				332	1	0.3003	318	63	16.5354
ALG13	0	genome.wustl.edu	37	X	110954936	110954936	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	110954936	110954936	C	T	SNP	ALG13	ENST00000251943	human	ensembl	74_37	+1	known	missense	c.556	p.R186W	1.000	pfam_OTU,pfscan_OTU	pfam_OTU,pfscan_OTU,pfscan_Tudor	-	no_errors	ALG13	HGNC	ENSG00000101901				45	0	0	25	17	40.4762
TRPC5	0	genome.wustl.edu	37	X	111090440	111090440	+	Silent	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	111090440	111090440	T	C	SNP	TRPC5	ENST00000262839	human	ensembl	74_37	-1	known	silent	c.1602	p.G534	1.000	pfam_Ion_trans_dom,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC5_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC5	HGNC	ENSG00000072315				153	0	0	137	57	29.3814
HTR2C	0	genome.wustl.edu	37	X	113965896	113965896	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	113965896	113965896	G	T	SNP	HTR2C	ENST00000276198	human	ensembl	74_37	+1	known	missense	c.229	p.A77S	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_5HT_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_5HT2C_rcpt,prints_GPCR_Rhodpsn,prints_5HT_rcpt	-	no_errors	HTR2C	HGNC	ENSG00000147246				102	0	0	74	42	36.2069
LRCH2	0	genome.wustl.edu	37	X	114419019	114419019	+	Silent	SNP	T	T	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	114419019	114419019	T	A	SNP	LRCH2	ENST00000317135	human	ensembl	74_37	-1	known	silent	c.576	p.V192	0.939	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_CH-domain,superfamily_CH-domain,superfamily_NA-bd_OB-fold,smart_Leu-rich_rpt_typical-subtyp,smart_CH-domain,pfscan_CH-domain	-	no_errors	LRCH2	HGNC	ENSG00000130224				19	0	0	27	5	15.625
LRCH2	0	genome.wustl.edu	37	X	114422934	114422934	+	Splice_Site	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	114422934	114422934	C	T	SNP	LRCH2	ENST00000317135	human	ensembl	74_37	-1	known	splice_site	c.350-1	e2-1	1.000	-	-	-	no_errors	LRCH2	HGNC	ENSG00000130224				20	0	0	14	6	30
TMEM255A	0	genome.wustl.edu	37	X	119419025	119419025	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	119419025	119419025	G	A	SNP	TMEM255A	ENST00000309720	human	ensembl	74_37	-1	known	missense	c.541	p.R181W	1.000	NULL	NULL	-	no_errors	TMEM255A	HGNC	ENSG00000125355				168	0	0	149	48	24.3655
CT47B1	0	genome.wustl.edu	37	X	120009111	120009111	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	120009111	120009111	G	A	SNP	CT47B1	ENST00000371311	human	ensembl	74_37	-1	known	silent	c.414	p.N138	0.000	NULL	NULL	-	no_errors	CT47B1	HGNC	ENSG00000236446				107	0	0	74	27	26.7327
FRMPD4	0	genome.wustl.edu	37	X	12722594	12722594	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	12722594	12722594	C	T	SNP	FRMPD4	ENST00000380682	human	ensembl	74_37	+1	known	missense	c.1187	p.P396L	1.000	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ,pfscan_WW_dom	-	no_errors	FRMPD4	HGNC	ENSG00000169933				118	0	0	110	40	26.6667
SMARCA1	0	genome.wustl.edu	37	X	128645816	128645816	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	128645816	128645816	G	A	SNP	SMARCA1	ENST00000371122	human	ensembl	74_37	-1	known	missense	c.775	p.R259C	1.000	pfam_SNF2_N,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_SNF2_N,pfam_SLIDE,pfam_ISWI_HAND-dom,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Homeodomain-like,superfamily_ISWI_HAND-dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_SANT/Myb,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCA1	HGNC	ENSG00000102038				173	0	0	202	24	10.6195
SASH3	0	genome.wustl.edu	37	X	128924995	128924995	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	128924995	128924995	C	T	SNP	SASH3	ENST00000356892	human	ensembl	74_37	+1	known	missense	c.380	p.A127V	0.969	pfam_rSAM/SH3_domain-containing	pfam_rSAM/SH3_domain-containing,pfam_SAM_2,pfam_SAM_type1,pfam_SH3_2,superfamily_SAM/pointed,superfamily_SH3_domain,smart_SH3_domain,smart_SAM,pfscan_SAM	-	no_errors	SASH3	HGNC	ENSG00000122122				73	0	0	59	39	39.7959
TLR8	0	genome.wustl.edu	37	X	12939203	12939203	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	12939203	12939203	A	G	SNP	TLR8	ENST00000218032	human	ensembl	74_37	+1	known	missense	c.2044	p.T682A	0.366	NULL	pfam_Leu-rich_rpt,pfam_TIR_dom,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR8	HGNC	ENSG00000101916				57	0	0	68	35	33.9806
ARHGAP36	0	genome.wustl.edu	37	X	130222706	130222706	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	130222706	130222706	C	T	SNP	ARHGAP36	ENST00000276211	human	ensembl	74_37	+1	known	missense	c.1591	p.R531C	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP36	HGNC	ENSG00000147256				48	0	0	20	11	35.4839
GPC4	0	genome.wustl.edu	37	X	132445391	132445391	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	132445391	132445391	G	A	SNP	GPC4	ENST00000370828	human	ensembl	74_37	-1	known	missense	c.772	p.R258W	0.875	pfam_Glypican	pfam_Glypican	-	no_errors	GPC4	HGNC	ENSG00000076716				134	0	0	101	51	33.5526
MIR542	0	genome.wustl.edu	37	X	133675434	133675434	+	RNA	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	133675434	133675434	G	A	SNP	MIR542	ENST00000385050	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR542	HGNC	ENSG00000207784				121	0	0	98	55	35.9477
FAM127A	0	genome.wustl.edu	37	X	134166473	134166473	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	134166473	134166473	G	A	SNP	FAM127A	ENST00000257013	human	ensembl	74_37	+1	novel	silent	c.60	p.T20	0.001	NULL	NULL	-	no_errors	FAM127A	HGNC	ENSG00000134590				112	0	0	63	35	35.7143
SAGE1	0	genome.wustl.edu	37	X	134989148	134989148	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	134989148	134989148	A	C	SNP	SAGE1	ENST00000324447	human	ensembl	74_37	+1	known	missense	c.800	p.N267T	0.003	NULL	NULL	-	no_errors	SAGE1	HGNC	ENSG00000181433				118	0	0	105	43	29.0541
MMGT1	0	genome.wustl.edu	37	X	135047268	135047268	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	135047268	135047268	G	A	SNP	MMGT1	ENST00000433339	human	ensembl	74_37	-1	known	missense	c.506	p.S169L	0.998	NULL	pfam_Magnesium_transport	-	no_errors	MMGT1	HGNC	ENSG00000169446				205	0	0	160	73	31.3305
ARHGEF6	0	genome.wustl.edu	37	X	135751673	135751673	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	135751673	135751673	C	T	SNP	ARHGEF6	ENST00000250617	human	ensembl	74_37	-1	known	missense	c.2158	p.A720T	1.000	NULL	pfam_DH-domain,pfam_SH3_2,pfam_SH3_domain,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain,prints_SM22_calponin	-	no_errors	ARHGEF6	HGNC	ENSG00000129675				91	0	0	78	34	30.3571
RBMX	0	genome.wustl.edu	37	X	135956574	135956574	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	135956574	135956574	C	T	SNP	RBMX	ENST00000320676	human	ensembl	74_37	-1	known	silent	c.903	p.P301	1.000	NULL	pfam_RRM_dom,pfam_RBM1CTR,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBMX	HGNC	ENSG00000147274				118	0	0	85	25	22.7273
FGF13	0	genome.wustl.edu	37	X	137793063	137793063	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	137793063	137793063	T	C	SNP	FGF13	ENST00000315930	human	ensembl	74_37	-1	known	missense	c.103	p.K35E	1.000	NULL	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam,prints_Fibroblast_GF_fam	-	no_errors	FGF13	HGNC	ENSG00000129682				107	0	0	75	33	30.5556
SPANXC	0	genome.wustl.edu	37	X	140335784	140335784	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	140335784	140335784	G	A	SNP	SPANXC	ENST00000358993	human	ensembl	74_37	-1	known	missense	c.160	p.R54C	0.001	pfam_SPANX_prot	pfam_SPANX_prot	-	no_errors	SPANXC	HGNC	ENSG00000198573				190	0	0	169	58	25.5507
SPANXN3	0	genome.wustl.edu	37	X	142605183	142605183	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	142605183	142605183	T	A	SNP	SPANXN3	ENST00000370503	human	ensembl	74_37	-1	known	missense	c.37	p.T13S	0.000	pfam_SPANX_prot	pfam_SPANX_prot	-	no_errors	SPANXN3	HGNC	ENSG00000189252				131	0	0	108	65	37.5723
TMEM257	0	genome.wustl.edu	37	X	144909328	144909328	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	144909328	144909328	T	G	SNP	TMEM257	ENST00000408967	human	ensembl	74_37	+1	known	missense	c.133	p.L45V	0.006	NULL	NULL	-	no_errors	TMEM257	HGNC	ENSG00000221870				65	0	0	91	5	5.20833
IL3RA	0	genome.wustl.edu	37	X	1471117	1471117	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	1471117	1471117	C	T	SNP	IL3RA	ENST00000331035	human	ensembl	74_37	+1	known	silent	c.423	p.N141	0.000	pfam_IL-6_rcpt_alpha-bd,superfamily_Fibronectin_type3	pfam_IL-6_rcpt_alpha-bd,superfamily_Fibronectin_type3	-	no_errors	IL3RA	HGNC	ENSG00000185291				69	0	0	33	20	37.7358
ZNF275	0	genome.wustl.edu	37	X	152613196	152613196	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	152613196	152613196	C	T	SNP	ZNF275	ENST00000440091	human	ensembl	74_37	+1	known	silent	c.1143	p.C381	0.211	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF275	HGNC	ENSG00000063587				37	0	0	20	6	23.0769
ATP2B3	0	genome.wustl.edu	37	X	152813442	152813442	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	152813442	152813442	C	T	SNP	ATP2B3	ENST00000263519	human	ensembl	74_37	+1	known	nonsense	c.1108	p.Q370*	1.000	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B3	HGNC	ENSG00000067842				99	0	0	88	35	28.4553
FAM58A	0	genome.wustl.edu	37	X	152860096	152860096	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	152860096	152860096	C	T	SNP	FAM58A	ENST00000406277	human	ensembl	74_37	-1	known	missense	c.332	p.R111H	0.681	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	FAM58A	HGNC	ENSG00000147382				94	0	0	76	16	17.3913
PLXNB3	0	genome.wustl.edu	37	X	153042773	153042773	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	153042773	153042773	C	T	SNP	PLXNB3	ENST00000538966	human	ensembl	74_37	+1	known	missense	c.5107	p.R1703C	0.996	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Plexin_repeat,pfam_Semap_dom,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNB3	HGNC	ENSG00000198753				24	0	0	9	5	35.7143
SRPK3	0	genome.wustl.edu	37	X	153047269	153047269	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	153047269	153047269	T	A	SNP	SRPK3	ENST00000370101	human	ensembl	74_37	+1	known	missense	c.371	p.I124N	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	SRPK3	HGNC	ENSG00000184343				74	0	0	54	21	28
L1CAM	0	genome.wustl.edu	37	X	153128277	153128277	+	Silent	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	153128277	153128277	G	A	SNP	L1CAM	ENST00000543994	human	ensembl	74_37	-1	known	silent	c.3621	p.D1207	0.397	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	L1CAM	HGNC	ENSG00000198910				55	0	0	28	25	47.1698
RENBP	0	genome.wustl.edu	37	X	153207102	153207102	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	153207102	153207102	G	A	SNP	RENBP	ENST00000412763	human	ensembl	74_37	-1	known	missense	c.692	p.T231I	0.654	superfamily_6-hairpin_glycosidase-like	pfam_AGE/RnBP,superfamily_6-hairpin_glycosidase-like	-	no_errors	RENBP	HGNC	ENSG00000102032				63	0	0	50	20	28.5714
GDI1	0	genome.wustl.edu	37	X	153669509	153669509	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	153669509	153669509	C	T	SNP	GDI1	ENST00000447750	human	ensembl	74_37	+1	known	silent	c.786	p.N262	0.511	pfam_GDP_dissociation_inhibitor	pfam_GDP_dissociation_inhibitor,prints_RabGDI,prints_GDP_dissociation_inhibitor	-	no_errors	GDI1	HGNC	ENSG00000203879				158	0	0	135	20	12.9032
FAM50A	0	genome.wustl.edu	37	X	153678623	153678623	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	153678623	153678623	C	T	SNP	FAM50A	ENST00000393600	human	ensembl	74_37	+1	known	missense	c.967	p.R323C	1.000	pfam_XAP5	pfam_XAP5	-	no_errors	FAM50A	HGNC	ENSG00000071859				90	0	0	71	28	28.2828
PLXNA3	0	genome.wustl.edu	37	X	153689602	153689602	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	153689602	153689602	C	T	SNP	PLXNA3	ENST00000369682	human	ensembl	74_37	+1	known	missense	c.758	p.A253V	0.642	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA3	HGNC	ENSG00000130827				80	0	0	101	11	9.82143
LAGE3	0	genome.wustl.edu	37	X	153706395	153706395	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	153706395	153706395	C	T	SNP	LAGE3	ENST00000357360	human	ensembl	74_37	-1	known	missense	c.320	p.R107H	0.000	pfam_EKC/KEOPS_Pcc1	pfam_EKC/KEOPS_Pcc1	-	no_errors	LAGE3	HGNC	ENSG00000196976				29	0	0	32	18	36
RAB39B	0	genome.wustl.edu	37	X	154490449	154490449	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	154490449	154490449	C	T	SNP	RAB39B	ENST00000369454	human	ensembl	74_37	-1	known	missense	c.281	p.R94H	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB39B	HGNC	ENSG00000155961				319	0	0	266	134	33.5
ACE2	0	genome.wustl.edu	37	X	15607507	15607507	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	15607507	15607507	C	T	SNP	ACE2	ENST00000252519	human	ensembl	74_37	-1	known	missense	c.656	p.R219H	0.982	pfam_Peptidase_M2	pfam_Peptidase_M2,prints_Peptidase_M2	-	no_errors	ACE2	HGNC	ENSG00000130234				201	0	0	158	61	27.8539
AKAP17A	0	genome.wustl.edu	37	X	1712726	1712726	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	1712726	1712726	G	A	SNP	AKAP17A	ENST00000313871	human	ensembl	74_37	+1	known	missense	c.371	p.R124H	0.833	NULL	NULL	-	no_errors	AKAP17A	HGNC	ENSG00000197976				119	0	0	73	58	44.2748
CDKL5	0	genome.wustl.edu	37	X	18622107	18622107	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	18622107	18622107	C	T	SNP	CDKL5	ENST00000379989	human	ensembl	74_37	+1	known	missense	c.1063	p.R355W	0.997	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDKL5	HGNC	ENSG00000008086				204	0	0	203	16	7.30594
MAP3K15	0	genome.wustl.edu	37	X	19475114	19475114	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	19475114	19475114	C	T	SNP	MAP3K15	ENST00000338883	human	ensembl	74_37	-1	known	silent	c.912	p.L304	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K15	HGNC	ENSG00000180815				43	0	0	42	17	28.8136
KLHL34	0	genome.wustl.edu	37	X	21674083	21674083	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	21674083	21674083	C	T	SNP	KLHL34	ENST00000379499	human	ensembl	74_37	-1	known	silent	c.1824	p.A608	0.022	pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL34	HGNC	ENSG00000185915				24	0	0	14	6	30
MAGEB6	0	genome.wustl.edu	37	X	26212473	26212473	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	26212473	26212473	C	T	SNP	MAGEB6	ENST00000379034	human	ensembl	74_37	+1	known	silent	c.510	p.A170	0.000	NULL	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB6	HGNC	ENSG00000176746				88	0	0	66	21	24.1379
ARSD	0	genome.wustl.edu	37	X	2825515	2825515	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	2825515	2825515	G	A	SNP	ARSD	ENST00000381154	human	ensembl	74_37	-1	known	missense	c.1579	p.R527W	0.000	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSD	HGNC	ENSG00000006756				14	0	0	8	6	42.8571
MXRA5	0	genome.wustl.edu	37	X	3240641	3240641	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	3240641	3240641	G	T	SNP	MXRA5	ENST00000217939	human	ensembl	74_37	-1	known	missense	c.3085	p.P1029T	0.000	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MXRA5	HGNC	ENSG00000101825				133	0	0	95	46	32.6241
FAM47A	0	genome.wustl.edu	37	X	34149285	34149285	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	34149285	34149285	G	A	SNP	FAM47A	ENST00000346193	human	ensembl	74_37	-1	known	missense	c.1111	p.R371W	0.001	NULL	NULL	-	no_errors	FAM47A	HGNC	ENSG00000185448				84	0	0	50	27	35.0649
FAM47B	0	genome.wustl.edu	37	X	34962859	34962859	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	34962859	34962859	C	T	SNP	FAM47B	ENST00000329357	human	ensembl	74_37	+1	known	silent	c.1911	p.D637	0.000	NULL	NULL	-	no_errors	FAM47B	HGNC	ENSG00000189132				153	0	0	152	68	30.9091
USP9X	0	genome.wustl.edu	37	X	40996215	40996215	+	Silent	SNP	A	A	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	40996215	40996215	A	G	SNP	USP9X	ENST00000324545	human	ensembl	74_37	+1	known	silent	c.594	p.S198	0.997	NULL	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	-	no_errors	USP9X	HGNC	ENSG00000124486				40	0	0	41	24	36.9231
RGN	0	genome.wustl.edu	37	X	46943850	46943850	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	46943850	46943850	C	T	SNP	RGN	ENST00000336169	human	ensembl	74_37	+1	known	missense	c.197	p.S66L	0.419	pfam_SGL	pfam_SGL,prints_SMP-30,prints_Regucalcin	-	no_errors	RGN	HGNC	ENSG00000130988				12	0	0	19	3	13.6364
SSX5	0	genome.wustl.edu	37	X	48053565	48053565	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	48053565	48053565	C	A	SNP	SSX5	ENST00000311798	human	ensembl	74_37	-1	known	missense	c.403	p.V135F	0.051	NULL	pfam_SSXRD_motif,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	SSX5	HGNC	ENSG00000165583				82	0	0	97	16	14.1593
TBC1D25	0	genome.wustl.edu	37	X	48399811	48399811	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	48399811	48399811	C	T	SNP	TBC1D25	ENST00000376771	human	ensembl	74_37	+1	known	nonsense	c.214	p.R72*	1.000	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D25	HGNC	ENSG00000068354				135	0	0	96	50	34.2466
PQBP1	0	genome.wustl.edu	37	X	48759706	48759706	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	48759706	48759706	C	T	SNP	PQBP1	ENST00000218224	human	ensembl	74_37	+1	known	silent	c.489	p.R163	0.011	NULL	pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	PQBP1	HGNC	ENSG00000102103				22	0	0	17	5	22.7273
CCDC120	0	genome.wustl.edu	37	X	48922187	48922187	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	48922187	48922187	T	C	SNP	CCDC120	ENST00000603986	human	ensembl	74_37	+1	known	missense	c.716	p.L239P	1.000	NULL	pfam_DUF3338	-	no_errors	CCDC120	HGNC	ENSG00000147144				11	0	0	9	4	30.7692
SYP	0	genome.wustl.edu	37	X	49049793	49049793	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	49049793	49049793	C	T	SNP	SYP	ENST00000263233	human	ensembl	74_37	-1	known	missense	c.551	p.R184H	0.074	pfam_Marvel	pfam_Marvel,prints_Synaptophysin/porin	-	no_errors	SYP	HGNC	ENSG00000102003				41	0	0	28	12	30
GPR173	0	genome.wustl.edu	37	X	53106173	53106173	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	53106173	53106173	G	A	SNP	GPR173	ENST00000332582	human	ensembl	74_37	+1	known	missense	c.370	p.A124T	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR173	HGNC	ENSG00000184194				68	0	0	58	12	17.1429
FAM120C	0	genome.wustl.edu	37	X	54208985	54208985	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	54208985	54208985	G	A	SNP	FAM120C	ENST00000375180	human	ensembl	74_37	-1	known	missense	c.647	p.P216L	1.000	NULL	NULL	-	no_errors	FAM120C	HGNC	ENSG00000184083				18	0	0	15	4	21.0526
MAGED2	0	genome.wustl.edu	37	X	54841883	54841883	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	54841883	54841883	G	A	SNP	MAGED2	ENST00000218439	human	ensembl	74_37	+1	known	missense	c.1589	p.R530Q	1.000	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGED2	HGNC	ENSG00000102316				21	0	0	12	7	36.8421
TRO	0	genome.wustl.edu	37	X	54957360	54957360	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	54957360	54957360	C	T	SNP	TRO	ENST00000173898	human	ensembl	74_37	+1	known	silent	c.4203	p.N1401	0.000	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	TRO	HGNC	ENSG00000067445				58	0	0	27	15	35.7143
USP51	0	genome.wustl.edu	37	X	55514444	55514444	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	55514444	55514444	C	G	SNP	USP51	ENST00000500968	human	ensembl	74_37	-1	known	missense	c.929	p.R310T	0.992	NULL	pfam_Peptidase_C19/C67,pfam_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP51	HGNC	ENSG00000247746				82	0	0	78	31	28.4404
NLGN3	0	genome.wustl.edu	37	X	70389754	70389754	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	70389754	70389754	G	A	SNP	NLGN3	ENST00000358741	human	ensembl	74_37	+1	known	missense	c.2354	p.R785H	1.000	NULL	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN3	HGNC	ENSG00000196338				21	0	0	5	4	44.4444
HDAC8	0	genome.wustl.edu	37	X	71681927	71681927	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	71681927	71681927	G	A	SNP	HDAC8	ENST00000373573	human	ensembl	74_37	-1	known	missense	c.932	p.T311M	0.994	pfam_His_deacetylse_dom,pirsf_His_deacetylse_1	pfam_His_deacetylse_dom,pirsf_His_deacetylse_1,prints_His_deacetylse_1,prints_His_deacetylse	-	no_errors	HDAC8	HGNC	ENSG00000147099				72	0	0	57	25	30.4878
XIST	0	genome.wustl.edu	37	X	73065310	73065310	+	RNA	SNP	A	A	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	73065310	73065310	A	T	SNP	XIST	ENST00000429829	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	XIST	HGNC	ENSG00000229807				142	0	0	133	50	27.3224
ZCCHC13	0	genome.wustl.edu	37	X	73524363	73524363	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	73524363	73524363	C	T	SNP	ZCCHC13	ENST00000339534	human	ensembl	74_37	+1	known	missense	c.262	p.R88C	0.994	superfamily_Znf_CCHC	pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC13	HGNC	ENSG00000187969				118	0	0	75	26	25.7426
KIAA2022	0	genome.wustl.edu	37	X	73961202	73961202	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	73961202	73961202	G	A	SNP	KIAA2022	ENST00000055682	human	ensembl	74_37	-1	known	missense	c.3190	p.R1064C	1.000	NULL	NULL	-	no_errors	KIAA2022	HGNC	ENSG00000050030				93	0	0	73	32	30.4762
TBX22	0	genome.wustl.edu	37	X	79279656	79279656	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	79279656	79279656	C	T	SNP	TBX22	ENST00000373294	human	ensembl	74_37	+1	known	missense	c.451	p.R151C	1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX22	HGNC	ENSG00000122145				68	0	0	52	19	26.7606
BRWD3	0	genome.wustl.edu	37	X	79980463	79980463	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	79980463	79980463	C	T	SNP	BRWD3	ENST00000373275	human	ensembl	74_37	-1	known	missense	c.1490	p.R497Q	0.976	superfamily_Quino_amine_DH_bsu,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quino_amine_DH_bsu,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	BRWD3	HGNC	ENSG00000165288				55	0	0	47	27	36.4865
POU3F4	0	genome.wustl.edu	37	X	82764299	82764299	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	82764299	82764299	C	T	SNP	POU3F4	ENST00000373200	human	ensembl	74_37	+1	known	missense	c.967	p.R323C	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pirsf_Transcription_factor_POU,pfscan_Homeobox_dom,prints_POU	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pirsf_Transcription_factor_POU,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU	-	no_errors	POU3F4	HGNC	ENSG00000196767				35	0	0	20	15	42.8571
NAP1L3	0	genome.wustl.edu	37	X	92927271	92927271	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	92927271	92927271	G	T	SNP	NAP1L3	ENST00000373079	human	ensembl	74_37	-1	known	missense	c.1033	p.L345M	0.966	pfam_NAP_family	pfam_NAP_family	-	no_errors	NAP1L3	HGNC	ENSG00000186310				55	0	0	48	14	22.5806
DIAPH2	0	genome.wustl.edu	37	X	96854260	96854260	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	96854260	96854260	C	T	SNP	DIAPH2	ENST00000324765	human	ensembl	74_37	+1	known	nonsense	c.3250	p.R1084*	1.000	NULL	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,pfam_Drf_DAD,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	DIAPH2	HGNC	ENSG00000147202				9	0	0	16	7	30.4348
SHROOM2	0	genome.wustl.edu	37	X	9914758	9914758	+	Silent	SNP	C	C	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	9914758	9914758	C	T	SNP	SHROOM2	ENST00000380913	human	ensembl	74_37	+1	known	silent	c.4632	p.D1544	0.979	pfam_ASD2	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM2	HGNC	ENSG00000146950				14	0	0	15	7	31.8182
PCDH19	0	genome.wustl.edu	37	X	99551449	99551449	+	Silent	SNP	G	G	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	99551449	99551449	G	T	SNP	PCDH19	ENST00000373034	human	ensembl	74_37	-1	known	silent	c.3273	p.A1091	0.827	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH19	HGNC	ENSG00000165194				91	0	0	69	27	28.125
WDR47	0	genome.wustl.edu	37	1	109560141	109560141	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	109560141	109560141	T	-	DEL	WDR47	ENST00000400794	human	ensembl	74_37	-1	known	frame_shift_del	c.241	p.R81fs	1.000	smart_CTLH_C,pfscan_CTLH_C	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_CTLH_C,smart_WD40_repeat,pfscan_LisH_dimerisation,pfscan_CTLH_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR47	HGNC	ENSG00000085433				46	0	0	33	42	56
SLC16A4	0	genome.wustl.edu	37	1	110906426	110906427	+	In_Frame_Ins	INS	-	-	AAA			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	110906426	110906427	-	AAA	INS	SLC16A4	ENST00000369779	human	ensembl	74_37	-1	known	in_frame_ins	c.1426_1425	p.475in_frame_insF	0.998:0.998	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A4	HGNC	ENSG00000168679				74	0	0	83	25	23.1481
PRDM2	0	genome.wustl.edu	37	1	14107246	14107246	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	14107246	14107246	C	-	DEL	PRDM2	ENST00000235372	human	ensembl	74_37	+1	known	frame_shift_del	c.2956	p.P987fs	0.994	pirsf_RIZ_retinblastoma-bd_prot	pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pirsf_RIZ_retinblastoma-bd_prot,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM2	HGNC	ENSG00000116731				83	0	0	74	19	20.4301
PRDM2	0	genome.wustl.edu	37	1	14107892	14107893	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	14107892	14107893	-	T	INS	PRDM2	ENST00000235372	human	ensembl	74_37	+1	known	frame_shift_ins	c.3602_3603	p.L1203fs	1.000:0.389	smart_Znf_C2H2-like,pirsf_RIZ_retinblastoma-bd_prot,pfscan_Znf_C2H2	pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pirsf_RIZ_retinblastoma-bd_prot,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM2	HGNC	ENSG00000116731				130	0	0	99	47	32.1918
PLEKHO1	0	genome.wustl.edu	37	1	150131249	150131249	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	150131249	150131249	C	-	DEL	PLEKHO1	ENST00000025469	human	ensembl	74_37	+1	known	frame_shift_del	c.659	p.Q222fs	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHO1	HGNC	ENSG00000023902				50	0	0	50	12	19.3548
SLC27A3	0	genome.wustl.edu	37	1	153749150	153749150	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	153749150	153749150	C	-	DEL	SLC27A3	ENST00000368661	human	ensembl	74_37	+1	known	frame_shift_del	c.965	p.Q324fs	0.971	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	SLC27A3	HGNC	ENSG00000143554				49	0	0	49	16	24.6154
SLC39A1	0	genome.wustl.edu	37	1	153934780	153934781	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	153934780	153934781	-	C	INS	SLC39A1	ENST00000310483	human	ensembl	74_37	-1	known	frame_shift_ins	c.234_233	p.V79fs	0.899:1.000	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A1	HGNC	ENSG00000143570				106	0	0	116	18	13.4328
NES	0	genome.wustl.edu	37	1	156642804	156642804	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	156642804	156642804	G	-	DEL	NES	ENST00000368223	human	ensembl	74_37	-1	known	frame_shift_del	c.1176	p.T393fs	0.087	NULL	pfam_IF	-	no_errors	NES	HGNC	ENSG00000132688				102	0	0	122	58	32.2222
ENSG00000228863	0	genome.wustl.edu	37	1	160640798	160640798	+	RNA	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	160640798	160640798	T	-	DEL	ENSG00000228863	ENST00000598917	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.983	-	-	-	no_errors	RP11-404F10.2	Clone_based_vega_gene	ENSG00000228863				17	0	0	28	8	22.2222
ILDR2	0	genome.wustl.edu	37	1	166890564	166890564	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	166890564	166890564	C	-	DEL	ILDR2	ENST00000271417	human	ensembl	74_37	-1	known	frame_shift_del	c.1264	p.V422fs	0.548	NULL	pfam_LISCH7,smart_Ig_sub	-	no_errors	ILDR2	HGNC	ENSG00000143195				18	0	0	19	11	36.6667
ADCY10	0	genome.wustl.edu	37	1	167863165	167863166	+	Frame_Shift_Ins	INS	-	-	AA			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	167863165	167863166	-	AA	INS	ADCY10	ENST00000367851	human	ensembl	74_37	-1	known	frame_shift_ins	c.754_753	p.A251fs	0.967:0.963	pirsf_Adenylate_cylcase_typ10	pfam_A/G_cyclase,superfamily_A/G_cyclase,superfamily_P-loop_NTPase,pirsf_Adenylate_cylcase_typ10,pfscan_A/G_cyclase	-	no_errors	ADCY10	HGNC	ENSG00000143199				34	0	0	59	17	22.3684
ADCY10	0	genome.wustl.edu	37	1	167870995	167870995	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	167870995	167870995	T	-	DEL	ADCY10	ENST00000367851	human	ensembl	74_37	-1	known	frame_shift_del	c.341	p.N114fs	0.188	pfam_A/G_cyclase,superfamily_A/G_cyclase,pirsf_Adenylate_cylcase_typ10,pfscan_A/G_cyclase	pfam_A/G_cyclase,superfamily_A/G_cyclase,superfamily_P-loop_NTPase,pirsf_Adenylate_cylcase_typ10,pfscan_A/G_cyclase	-	no_errors	ADCY10	HGNC	ENSG00000143199				193	0	0	238	60	20.1342
BRINP3	0	genome.wustl.edu	37	1	190067583	190067583	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	190067583	190067583	A	-	DEL	BRINP3	ENST00000367462	human	ensembl	74_37	-1	known	frame_shift_del	c.1866	p.F622fs	1.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	BRINP3	HGNC	ENSG00000162670				306	0	0	297	103	25.75
GOLT1A	0	genome.wustl.edu	37	1	204170836	204170836	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	204170836	204170836	C	-	DEL	GOLT1A	ENST00000308302	human	ensembl	74_37	-1	known	frame_shift_del	c.221	p.G74fs	1.000	pfam_Vesicle_transpt_Got1/SFT2	pfam_Vesicle_transpt_Got1/SFT2	-	no_errors	GOLT1A	HGNC	ENSG00000174567				134	0	0	139	37	21.0227
DYRK3	0	genome.wustl.edu	37	1	206820772	206820772	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	206820772	206820772	T	-	DEL	DYRK3	ENST00000367109	human	ensembl	74_37	+1	known	frame_shift_del	c.229	p.L78fs	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	DYRK3	HGNC	ENSG00000143479				90	0	0	107	30	21.8978
EPHX1	0	genome.wustl.edu	37	1	226016531	226016531	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	226016531	226016531	G	-	DEL	EPHX1	ENST00000272167	human	ensembl	74_37	+1	known	frame_shift_del	c.101	p.P36fs	1.000	pirsf_Epoxide_hydrolase	pfam_Epoxide_hydro_N,pfam_AB_hydrolase_1,pirsf_Epoxide_hydrolase,prints_Epox_hydrolase-like	-	no_errors	EPHX1	HGNC	ENSG00000143819				16	0	0	25	7	21.875
MAP10	0	genome.wustl.edu	37	1	232943121	232943122	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	232943121	232943122	-	A	INS	MAP10	ENST00000418460	human	ensembl	74_37	+1	known	frame_shift_ins	c.2352_2353	p.I785fs	0.000:0.000	NULL	NULL	-	no_errors	MAP10	HGNC	ENSG00000212916				107	0	0	101	27	21.0938
ARID4B	0	genome.wustl.edu	37	1	235345419	235345419	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	235345419	235345419	T	-	DEL	ARID4B	ENST00000264183	human	ensembl	74_37	-1	known	frame_shift_del	c.2815	p.T939fs	1.000	NULL	pfam_RBB1NT,pfam_ARID/BRIGHT_DNA-bd,pfam_Tudor-knot,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Chromodomain-like,smart_Tudor,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID4B	HGNC	ENSG00000054267				60	0	0	65	30	31.5789
GGPS1	0	genome.wustl.edu	37	1	235505913	235505913	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	235505913	235505913	A	-	DEL	GGPS1	ENST00000282841	human	ensembl	74_37	+1	known	frame_shift_del	c.729	p.K245fs	1.000	pfam_Polyprenyl_synt,superfamily_Terpenoid_synth	pfam_Polyprenyl_synt,superfamily_Terpenoid_synth	-	no_errors	GGPS1	HGNC	ENSG00000152904				76	0	0	55	15	21.4286
LYPLA2	0	genome.wustl.edu	37	1	24119502	24119502	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	24119502	24119502	T	-	DEL	LYPLA2	ENST00000374514	human	ensembl	74_37	+1	known	frame_shift_del	c.83	p.L30fs	1.000	pfam_PLipase/COase/thioEstase	pfam_PLipase/COase/thioEstase,pfam_AB_hydrolase_3	-	no_errors	LYPLA2	HGNC	ENSG00000011009				169	0	0	114	49	30.0613
EXO1	0	genome.wustl.edu	37	1	242045292	242045292	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	242045292	242045292	A	-	DEL	EXO1	ENST00000348581	human	ensembl	74_37	+1	known	frame_shift_del	c.2184	p.D731fs	0.001	NULL	pfam_XPG-I_dom,pfam_XPG_DNA_repair_N,superfamily_5-3_exonuclease_C,smart_XPG_DNA_repair_N,smart_XPG-I_dom,smart_HhH2,prints_XPG/Rad2	-	no_errors	EXO1	HGNC	ENSG00000174371				45	0	0	49	15	23.4375
ARID1A	0	genome.wustl.edu	37	1	27105931	27105931	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	27105931	27105931	G	-	DEL	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	frame_shift_del	c.5542	p.D1850fs	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713				73	0	0	50	19	27.5362
MAP3K6	0	genome.wustl.edu	37	1	27687696	27687696	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	27687696	27687696	G	-	DEL	MAP3K6	ENST00000357582	human	ensembl	74_37	-1	known	frame_shift_del	c.1784	p.P595fs	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K6	HGNC	ENSG00000142733				22	0	0	12	9	42.8571
PLK3	0	genome.wustl.edu	37	1	45270020	45270021	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	45270020	45270021	-	C	INS	PLK3	ENST00000372201	human	ensembl	74_37	+1	known	frame_shift_ins	c.1352_1353	p.A453fs	1.000:1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_POLO_box_duplicated_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_dom	-	no_errors	PLK3	HGNC	ENSG00000173846				52	0	0	38	10	20.8333
FAF1	0	genome.wustl.edu	37	1	51005335	51005336	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	51005335	51005336	-	T	INS	FAF1	ENST00000371778	human	ensembl	74_37	-1	known	frame_shift_ins	c.1334_1333	p.T445fs	1.000:1.000	smart_UAS	pfam_UBX,superfamily_UBA-like,smart_UAS,smart_UBX,pfscan_UBX	-	no_errors	FAF1	HGNC	ENSG00000185104				20	0	0	29	9	23.6842
FGGY	0	genome.wustl.edu	37	1	59812017	59812017	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	59812017	59812017	G	-	DEL	FGGY	ENST00000303721	human	ensembl	74_37	+1	known	frame_shift_del	c.412	p.V140fs	0.997	pfam_Carb_kinase_FGGY_N,tigrfam_Carb_kinase_FGGY-rel	pfam_Carb_kinase_FGGY_C,pfam_Carb_kinase_FGGY_N,tigrfam_Carb_kinase_FGGY-rel	-	no_errors	FGGY	HGNC	ENSG00000172456				61	0	0	49	17	25.7576
RPL22	0	genome.wustl.edu	37	1	6257785	6257785	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	6257785	6257785	T	-	DEL	RPL22	ENST00000234875	human	ensembl	74_37	-1	known	frame_shift_del	c.44	p.K15fs	1.000	pfam_Ribosomal_L22e	pfam_Ribosomal_L22e	-	no_errors	RPL22	HGNC	ENSG00000116251				32	0	0	49	9	15.5172
WDR63	0	genome.wustl.edu	37	1	85598680	85598680	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	85598680	85598680	A	-	DEL	WDR63	ENST00000294664	human	ensembl	74_37	+1	known	frame_shift_del	c.2675	p.*892fs	0.001	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR63	HGNC	ENSG00000162643				131	0	0	137	43	23.8889
RERE	0	genome.wustl.edu	37	1	8674689	8674690	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	8674689	8674690	-	G	INS	RERE	ENST00000337907	human	ensembl	74_37	-1	known	frame_shift_ins	c.453_452	p.A152fs	1.000:1.000	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	pfam_Atrophin-like,pfam_BAH_dom,pfam_ELM2_dom,pfam_Znf_GATA,superfamily_Homeodomain-like,smart_BAH_dom,smart_SANT/Myb,smart_Znf_GATA,pfscan_BAH_dom,pfscan_ELM2_dom	-	no_errors	RERE	HGNC	ENSG00000142599				91	0	0	78	13	14.2857
ZNF644	0	genome.wustl.edu	37	1	91406040	91406040	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	91406040	91406040	T	-	DEL	ZNF644	ENST00000337393	human	ensembl	74_37	-1	known	frame_shift_del	c.871	p.R291fs	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF644	HGNC	ENSG00000122482				60	0	0	41	18	30.5085
SPSB1	0	genome.wustl.edu	37	1	9416314	9416315	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	1	9416314	9416315	-	C	INS	SPSB1	ENST00000328089	human	ensembl	74_37	+1	known	frame_shift_ins	c.364_365	p.L124fs	1.000:1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_SOCS_C,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,smart_SOCS_C,pfscan_B30.2/SPRY,pfscan_SOCS_C	-	no_errors	SPSB1	HGNC	ENSG00000171621				49	0	0	40	8	16.6667
LDB1	0	genome.wustl.edu	37	10	103871226	103871226	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	103871226	103871226	G	-	DEL	LDB1	ENST00000425280	human	ensembl	74_37	-1	known	frame_shift_del	c.93	p.F32fs	0.934	NULL	NULL	-	no_errors	LDB1	HGNC	ENSG00000198728				68	0	0	44	11	20
SH3PXD2A	0	genome.wustl.edu	37	10	105363000	105363001	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	105363000	105363001	-	G	INS	SH3PXD2A	ENST00000369774	human	ensembl	74_37	-1	known	frame_shift_ins	c.1975_1974	p.K658fs	0.110:0.139	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Phox,superfamily_Phox,superfamily_SH3_domain,smart_Phox,smart_SH3_domain,pfscan_Phox,pfscan_SH3_domain	-	no_errors	SH3PXD2A	HGNC	ENSG00000107957				221	0	0	189	56	22.8571
IDI1	0	genome.wustl.edu	37	10	1087270	1087271	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	1087270	1087271	-	T	INS	IDI1	ENST00000381344	human	ensembl	74_37	-1	known	frame_shift_ins	c.712_711	p.E237fs	0.962:0.240	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like,pirsf_IsopentenylPP_isomerase_typ1,tigrfam_IsopentenylPP_isomerase_typ1	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like,pirsf_IsopentenylPP_isomerase_typ1,tigrfam_IsopentenylPP_isomerase_typ1	-	no_errors	IDI1	HGNC	ENSG00000067064				96	0	0	79	10	11.236
PRDX3	0	genome.wustl.edu	37	10	120936633	120936634	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	120936633	120936634	-	C	INS	PRDX3	ENST00000298510	human	ensembl	74_37	-1	known	frame_shift_ins	c.69_68	p.I24fs	0.832:0.980	NULL	pfam_AhpC/TSA,pfam_Redoxin,pfam_Peroxiredoxin_C,superfamily_Thioredoxin-like_fold	-	no_errors	PRDX3	HGNC	ENSG00000165672				38	0	0	37	15	28.8462
ST8SIA6	0	genome.wustl.edu	37	10	17363321	17363321	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	17363321	17363321	T	-	DEL	ST8SIA6	ENST00000377602	human	ensembl	74_37	-1	known	frame_shift_del	c.753	p.A252fs	0.024	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST8SIA6	HGNC	ENSG00000148488				64	0	0	55	11	16.6667
CACNB2	0	genome.wustl.edu	37	10	18828598	18828599	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	18828598	18828599	-	A	INS	CACNB2	ENST00000324631	human	ensembl	74_37	+1	known	frame_shift_ins	c.1928_1929	p.R646fs	1.000:1.000	NULL	pfam_GK/Ca_channel_bsu,pfam_VDCC_L_bsu,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_SH3_domain,prints_VDCC_L_bsu,prints_VDCC_L_b2su	-	no_errors	CACNB2	HGNC	ENSG00000165995				114	0	0	79	18	18.5567
PIP4K2A	0	genome.wustl.edu	37	10	22830828	22830828	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	22830828	22830828	G	-	DEL	PIP4K2A	ENST00000376573	human	ensembl	74_37	-1	known	frame_shift_del	c.941	p.P314fs	1.000	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP4K2A	HGNC	ENSG00000150867				64	0	0	78	23	22.7723
MYO3A	0	genome.wustl.edu	37	10	26462760	26462760	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	26462760	26462760	A	-	DEL	MYO3A	ENST00000265944	human	ensembl	74_37	+1	known	frame_shift_del	c.3567	p.M1192fs	0.509	superfamily_P-loop_NTPase	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3A	HGNC	ENSG00000095777				95	0	0	58	21	26.5823
ANKRD26	0	genome.wustl.edu	37	10	27295869	27295869	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	27295869	27295869	T	-	DEL	ANKRD26	ENST00000436985	human	ensembl	74_37	-1	known	frame_shift_del	c.5024	p.N1675fs	0.007	NULL	pfam_DUF3496,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Polyketide_synth_docking,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD26	HGNC	ENSG00000107890				126	0	0	114	36	24
MASTL	0	genome.wustl.edu	37	10	27459254	27459254	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	27459254	27459254	A	-	DEL	MASTL	ENST00000375940	human	ensembl	74_37	+1	known	frame_shift_del	c.1366	p.I458fs	1.000	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MASTL	HGNC	ENSG00000120539				48	0	0	39	15	27.7778
SIRT1	0	genome.wustl.edu	37	10	69676036	69676036	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	69676036	69676036	T	-	DEL	SIRT1	ENST00000212015	human	ensembl	74_37	+1	known	frame_shift_del	c.1930	p.L645fs	1.000	NULL	pfam_Sirtuin,pfscan_Ssirtuin_cat_dom	-	no_errors	SIRT1	HGNC	ENSG00000096717				65	0	0	73	31	29.8077
SPOCK2	0	genome.wustl.edu	37	10	73827960	73827961	+	Frame_Shift_Ins	INS	-	-	GGGG			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	73827960	73827961	-	GGGG	INS	SPOCK2	ENST00000317376	human	ensembl	74_37	-1	known	frame_shift_ins	c.574_573	p.A191fs	0.263:0.592	NULL	pfam_SPARC/Testican_Ca-bd-dom,pfam_Thyroglobulin_1,pfam_Kazal_dom,superfamily_Thyroglobulin_1,smart_Kazal_dom,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	-	no_errors	SPOCK2	HGNC	ENSG00000107742				10	0	0	6	6	50
GATA3	0	genome.wustl.edu	37	10	8115780	8115780	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	8115780	8115780	A	-	DEL	GATA3	ENST00000379328	human	ensembl	74_37	+1	known	frame_shift_del	c.1129	p.V379fs	1.000	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485				89	0	0	79	20	20.202
MBL1P	0	genome.wustl.edu	37	10	81680656	81680656	+	RNA	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	81680656	81680656	A	-	DEL	MBL1P	ENST00000480805	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	MBL1P	HGNC	ENSG00000242600				14	0	0	24	8	25
LARP4B	0	genome.wustl.edu	37	10	890939	890939	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	890939	890939	T	-	DEL	LARP4B	ENST00000316157	human	ensembl	74_37	-1	known	frame_shift_del	c.487	p.T163fs	1.000	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP4B	HGNC	ENSG00000107929				59	0	0	46	37	44.5783
KIF20B	0	genome.wustl.edu	37	10	91483767	91483767	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	10	91483767	91483767	A	-	DEL	KIF20B	ENST00000416354	human	ensembl	74_37	+1	known	frame_shift_del	c.1769	p.K592fs	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF20B	HGNC	ENSG00000138182				58	0	0	62	27	30.3371
AMPD3	0	genome.wustl.edu	37	11	10500144	10500145	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	10500144	10500145	-	C	INS	AMPD3	ENST00000396553	human	ensembl	74_37	+1	known	frame_shift_ins	c.293_294	p.A101fs	0.962:0.003	pirsf_AMP_deaminase	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	-	no_errors	AMPD3	HGNC	ENSG00000133805				167	0	0	164	9	5.20231
TTC12	0	genome.wustl.edu	37	11	113195384	113195384	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	113195384	113195384	A	-	DEL	TTC12	ENST00000314756	human	ensembl	74_37	+1	known	frame_shift_del	c.302	p.N102fs	1.000	superfamily_ARM-type_fold	pfam_TPR_1,superfamily_ARM-type_fold,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC12	HGNC	ENSG00000149292				47	0	0	40	5	11.1111
DPAGT1	0	genome.wustl.edu	37	11	118969142	118969143	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	118969142	118969143	-	A	INS	DPAGT1	ENST00000354202	human	ensembl	74_37	-1	known	frame_shift_ins	c.699_698	p.T234fs	1.000:1.000	pfam_Glycosyl_transferase_4	pfam_Glycosyl_transferase_4	-	no_errors	DPAGT1	HGNC	ENSG00000172269				122	0	0	172	41	19.2488
FLI1	0	genome.wustl.edu	37	11	128680804	128680805	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	128680804	128680805	-	G	INS	FLI1	ENST00000527786	human	ensembl	74_37	+1	known	frame_shift_ins	c.1280_1281	p.I430fs	0.998:0.734	NULL	pfam_Ets_dom,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	FLI1	HGNC	ENSG00000151702				119	0	0	86	19	18.0952
NCAPD3	0	genome.wustl.edu	37	11	134048586	134048586	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	134048586	134048586	G	-	DEL	NCAPD3	ENST00000534548	human	ensembl	74_37	-1	known	frame_shift_del	c.2725	p.Q909fs	1.000	superfamily_ARM-type_fold,pirsf_NCAPD3	superfamily_ARM-type_fold,pirsf_NCAPD3	-	no_errors	NCAPD3	HGNC	ENSG00000151503				67	0	0	74	5	6.32911
KCNA4	0	genome.wustl.edu	37	11	30033563	30033563	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	30033563	30033563	A	-	DEL	KCNA4	ENST00000328224	human	ensembl	74_37	-1	known	frame_shift_del	c.663	p.F221fs	0.902	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	pfam_K_chnl_volt-dep_Kv1.4_TID,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.4,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA4	HGNC	ENSG00000182255				106	0	0	65	23	26.1364
CCDC73	0	genome.wustl.edu	37	11	32635951	32635951	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	32635951	32635951	T	-	DEL	CCDC73	ENST00000335185	human	ensembl	74_37	-1	known	frame_shift_del	c.1913	p.N638fs	0.024	NULL	NULL	-	no_errors	CCDC73	HGNC	ENSG00000186714				22	0	0	28	6	17.6471
CCDC73	0	genome.wustl.edu	37	11	32637520	32637520	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	32637520	32637520	T	-	DEL	CCDC73	ENST00000335185	human	ensembl	74_37	-1	known	frame_shift_del	c.1341	p.E448fs	0.000	NULL	NULL	-	no_errors	CCDC73	HGNC	ENSG00000186714				48	0	0	40	11	21.5686
CCDC73	0	genome.wustl.edu	37	11	32676507	32676507	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	32676507	32676507	T	-	DEL	CCDC73	ENST00000335185	human	ensembl	74_37	-1	known	frame_shift_del	c.657	p.A220fs	0.987	NULL	NULL	-	no_errors	CCDC73	HGNC	ENSG00000186714				20	0	0	25	9	26.4706
CSTF3	0	genome.wustl.edu	37	11	33117910	33117910	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	33117910	33117910	T	-	DEL	CSTF3	ENST00000323959	human	ensembl	74_37	-1	known	frame_shift_del	c.1317	p.K439fs	1.000	pfam_Suf,smart_HAT	pfam_Suf,smart_HAT	-	no_errors	CSTF3	HGNC	ENSG00000176102				58	0	0	66	15	18.5185
PGAP2	0	genome.wustl.edu	37	11	3846303	3846305	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	3846303	3846305	CTT	-	DEL	PGAP2	ENST00000278243	human	ensembl	74_37	+1	known	in_frame_del	c.762_764	p.F256in_frame_del	1.000:1.000:1.000	pfam_Frag1/DRAM/Sfk1	pfam_Frag1/DRAM/Sfk1	-	no_errors	PGAP2	HGNC	ENSG00000148985				102	0	0	85	25	22.7273
ALX4	0	genome.wustl.edu	37	11	44286624	44286624	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	44286624	44286624	G	-	DEL	ALX4	ENST00000329255	human	ensembl	74_37	-1	known	frame_shift_del	c.1016	p.P339fs	0.977	NULL	pfam_Homeobox_dom,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_OAR_dom,pfscan_Homeobox_dom	-	no_errors	ALX4	HGNC	ENSG00000052850				39	0	0	22	2	8.33333
MAPK8IP1	0	genome.wustl.edu	37	11	45926551	45926551	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	45926551	45926551	A	-	DEL	MAPK8IP1	ENST00000241014	human	ensembl	74_37	+1	known	frame_shift_del	c.1923	p.N643fs	1.000	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	pfam_PTB/PI_dom,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,smart_PTB/PI_dom,pfscan_PTB/PI_dom,pfscan_SH3_domain	-	no_errors	MAPK8IP1	HGNC	ENSG00000121653				77	0	0	73	11	13.0952
C11orf94	0	genome.wustl.edu	37	11	45928455	45928456	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	45928455	45928456	-	G	INS	C11orf94	ENST00000449465	human	ensembl	74_37	-1	known	frame_shift_ins	c.140_139	p.L47fs	0.992:0.717	NULL	NULL	-	no_errors	C11orf94	HGNC	ENSG00000234776				62	0	0	53	16	23.1884
CELF1	0	genome.wustl.edu	37	11	47494744	47494745	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	47494744	47494745	-	G	INS	CELF1	ENST00000532048	human	ensembl	74_37	-1	known	frame_shift_ins	c.1307_1306	p.Q436fs	1.000:1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CELF1	HGNC	ENSG00000149187				61	0	0	76	19	20
OR51L1	0	genome.wustl.edu	37	11	5020583	5020584	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	5020583	5020584	-	T	INS	OR51L1	ENST00000321543	human	ensembl	74_37	+1	known	frame_shift_ins	c.371_372	p.V126fs	1.000:0.763	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51L1	HGNC	ENSG00000176798				173	0	0	143	47	24.7368
OR4A16	0	genome.wustl.edu	37	11	55111418	55111419	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	55111418	55111419	-	T	INS	OR4A16	ENST00000314721	human	ensembl	74_37	+1	known	frame_shift_ins	c.742_743	p.V250fs	0.397:0.532	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4A16	HGNC	ENSG00000181961				75	0	0	48	12	20
OR52H1	0	genome.wustl.edu	37	11	5565960	5565960	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	5565960	5565960	A	-	DEL	OR52H1	ENST00000322653	human	ensembl	74_37	-1	known	frame_shift_del	c.794	p.F265fs	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52H1	HGNC	ENSG00000181616				78	0	0	74	25	25.2525
FAM111A	0	genome.wustl.edu	37	11	58920101	58920101	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	58920101	58920101	A	-	DEL	FAM111A	ENST00000361723	human	ensembl	74_37	+1	known	frame_shift_del	c.960	p.N322fs	0.000	superfamily_Trypsin-like_Pept_dom	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom	-	no_errors	FAM111A	HGNC	ENSG00000166801				46	0	0	45	26	36.6197
INCENP	0	genome.wustl.edu	37	11	61912525	61912527	+	In_Frame_Del	DEL	GGA	GGA	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	GGA	GGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	61912525	61912527	GGA	-	DEL	INCENP	ENST00000394818	human	ensembl	74_37	+1	known	in_frame_del	c.1677_1679	p.E561in_frame_del	1.000:1.000:1.000	NULL	pfam_INCENP_N,pfam_Inner_centromere_prot_ARK-bd	-	no_errors	INCENP	HGNC	ENSG00000149503				34	0	0	27	10	27.027
SLC3A2	0	genome.wustl.edu	37	11	62649529	62649529	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	62649529	62649529	A	-	DEL	SLC3A2	ENST00000377892	human	ensembl	74_37	+1	known	frame_shift_del	c.985	p.K331fs	1.000	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	-	no_errors	SLC3A2	HGNC	ENSG00000168003				77	0	0	70	25	26.3158
RTN3	0	genome.wustl.edu	37	11	63525656	63525656	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	63525656	63525656	A	-	DEL	RTN3	ENST00000377819	human	ensembl	74_37	+1	known	frame_shift_del	c.3082	p.K1030fs	1.000	pfscan_Reticulon	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN3	HGNC	ENSG00000133318				55	0	0	66	17	20.4819
PPP1R14B	0	genome.wustl.edu	37	11	64012791	64012792	+	Frame_Shift_Del	DEL	AT	AT	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	AT	AT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	64012791	64012792	AT	-	DEL	PPP1R14B	ENST00000542235	human	ensembl	74_37	-1	putative	frame_shift_del	c.2_1	p.M1fs	0.273:0.065	NULL	pfam_PP1_inhibitor,superfamily_PP1_inhibitor	-	no_errors	PPP1R14B	HGNC	ENSG00000173457				19	0	0	16	5	23.8095
CCDC88B	0	genome.wustl.edu	37	11	64111890	64111891	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	64111890	64111891	-	A	INS	CCDC88B	ENST00000356786	human	ensembl	74_37	+1	known	frame_shift_ins	c.1877_1878	p.R627fs	0.000:0.000	NULL	pfam_Hook-related_fam	-	no_errors	CCDC88B	HGNC	ENSG00000168071				28	0	0	21	8	27.5862
MEN1	0	genome.wustl.edu	37	11	64575082	64575083	+	Frame_Shift_Ins	INS	-	-	CA			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	64575082	64575083	-	CA	INS	MEN1	ENST00000337652	human	ensembl	74_37	-1	known	frame_shift_ins	c.740_739	p.A247fs	1.000:1.000	pfam_Menin	pfam_Menin	-	no_errors	MEN1	HGNC	ENSG00000133895				107	0	0	127	36	22.0859
NAALADL1	0	genome.wustl.edu	37	11	64825900	64825901	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	64825900	64825901	-	T	INS	NAALADL1	ENST00000358658	human	ensembl	74_37	-1	known	frame_shift_ins	c.94_93	p.A31fs	0.000:0.000	NULL	pfam_TFR-like_dimer_dom,pfam_Peptidase_M28,pfam_Protease-assoc_domain,superfamily_TFR-like_dimer_dom	-	no_errors	NAALADL1	HGNC	ENSG00000168060				31	0	0	24	7	22.5806
SLC25A45	0	genome.wustl.edu	37	11	65146856	65146856	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	65146856	65146856	C	-	DEL	SLC25A45	ENST00000398802	human	ensembl	74_37	-1	known	frame_shift_del	c.330	p.F111fs	0.005	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A45	HGNC	ENSG00000162241				59	0	0	36	11	23.4043
EPS8L2	0	genome.wustl.edu	37	11	723305	723305	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	723305	723305	C	-	DEL	EPS8L2	ENST00000318562	human	ensembl	74_37	+1	known	frame_shift_del	c.1406	p.P471fs	0.005	NULL	pfam_PTB,pfam_SH3_domain,pfam_PTB/PI_dom,pfam_SH3_2,superfamily_SH3_domain,superfamily_SAM/pointed,smart_PTB/PI_dom,smart_SH3_domain,pfscan_PTB/PI_dom,pfscan_SH3_domain	-	no_errors	EPS8L2	HGNC	ENSG00000177106				60	0	0	68	10	12.8205
TALDO1	0	genome.wustl.edu	37	11	755877	755885	+	Splice_Site	DEL	AGCCATCGA	AGCCATCGA	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	AGCCATCGA	AGCCATCGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	11	755877	755885	AGCCATCGA	-	DEL	TALDO1	ENST00000319006	human	ensembl	74_37	+1	known	splice_site_del	c.98-2_98-1	e2-1	0.996:1.000:1.000:1.000:1.000:1.000:0.998:1.000:0.996	-	-	-	no_errors	TALDO1	HGNC	ENSG00000177156				50	0	0	34	9	20.9302
ENSG00000255641	0	genome.wustl.edu	37	12	10587929	10587929	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	10587929	10587929	T	-	DEL	ENSG00000255641	ENST00000539033	human	ensembl	74_37	-1	known	frame_shift_del	c.268	p.T90fs	0.000	pfam_Herpes_UL45-like	pfam_C-type_lectin,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	NKG2-E	Uniprot_gn	ENSG00000255641				147	0	0	182	33	15.3488
MVK	0	genome.wustl.edu	37	12	110019240	110019240	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	110019240	110019240	C	-	DEL	MVK	ENST00000228510	human	ensembl	74_37	+1	known	frame_shift_del	c.412	p.A141fs	1.000	pfam_GHMP_kinase_N_dom,superfamily_Ribosomal_S5_D2-typ_fold,prints_Mevalonate/galactokinase,prints_Galkinase,tigrfam_Mev_gal_kin	pfam_GHMP_kinase_N_dom,pfam_GHMP_kinase_C_dom,superfamily_Ribosomal_S5_D2-typ_fold,prints_Mevalonate/galactokinase,prints_Galkinase,tigrfam_Mev_gal_kin	-	no_errors	MVK	HGNC	ENSG00000110921				55	0	0	55	10	15.3846
HNF1A	0	genome.wustl.edu	37	12	121432115	121432115	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	121432115	121432115	G	-	DEL	HNF1A	ENST00000257555	human	ensembl	74_37	+1	known	frame_shift_del	c.862	p.P291fs	0.964	pfam_HNF1b_C	pfam_HNF1b_C,pfam_HNF-1_N,pfam_HNF1a_C,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_HNF1_dimer_dom,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	HNF1A	HGNC	ENSG00000135100				19	0	0	13	4	23.5294
GTF2H3	0	genome.wustl.edu	37	12	124132617	124132617	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	124132617	124132617	T	-	DEL	GTF2H3	ENST00000543341	human	ensembl	74_37	+1	known	frame_shift_del	c.308	p.L104fs	0.793	pfam_TFIIH_Tfb4/p34,tigrfam_TFIIH_Tfb4/p34	pfam_TFIIH_Tfb4/p34,tigrfam_TFIIH_Tfb4/p34	-	no_errors	GTF2H3	HGNC	ENSG00000111358				92	0	0	78	5	6.0241
HEBP1	0	genome.wustl.edu	37	12	13128322	13128322	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	13128322	13128322	C	-	DEL	HEBP1	ENST00000014930	human	ensembl	74_37	-1	known	frame_shift_del	c.490	p.D164fs	0.367	pfam_SOUL_haem-bd,superfamily_Reg_factor_effector_dom	pfam_SOUL_haem-bd,superfamily_Reg_factor_effector_dom	-	no_errors	HEBP1	HGNC	ENSG00000013583				67	0	0	76	27	26.2136
ATF7IP	0	genome.wustl.edu	37	12	14577801	14577802	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	14577801	14577802	-	A	INS	ATF7IP	ENST00000261168	human	ensembl	74_37	+1	known	frame_shift_ins	c.952_953	p.N320fs	0.416:0.322	NULL	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	ATF7IP	HGNC	ENSG00000171681				45	0	0	76	20	20.8333
ATF7IP	0	genome.wustl.edu	37	12	14578360	14578360	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	14578360	14578360	A	-	DEL	ATF7IP	ENST00000261168	human	ensembl	74_37	+1	known	frame_shift_del	c.1511	p.D506fs	1.000	NULL	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	ATF7IP	HGNC	ENSG00000171681				64	0	0	70	18	20.4545
PLCZ1	0	genome.wustl.edu	37	12	18889158	18889158	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	18889158	18889158	A	-	DEL	PLCZ1	ENST00000266505	human	ensembl	74_37	-1	known	frame_shift_del	c.132	p.F44fs	1.000	pfscan_EF_hand_dom	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_EF_hand_dom,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCZ1	HGNC	ENSG00000139151				43	0	0	35	16	31.3725
GXYLT1	0	genome.wustl.edu	37	12	42499816	42499816	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	42499816	42499816	A	-	DEL	GXYLT1	ENST00000398675	human	ensembl	74_37	-1	known	frame_shift_del	c.668	p.L223fs	1.000	pfam_Glyco_trans_8	pfam_Glyco_trans_8	-	no_errors	GXYLT1	HGNC	ENSG00000151233				56	0	0	61	18	22.7848
PUS7L	0	genome.wustl.edu	37	12	44142360	44142361	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	44142360	44142361	-	A	INS	PUS7L	ENST00000344862	human	ensembl	74_37	-1	known	frame_shift_ins	c.963_962	p.L321fs	1.000:1.000	pfam_PsdUridine_synth_TruD,superfamily_PsdUridine_synth_cat_dom,pirsf_PsdUridine_synth_TruD_euk,tigrfam_PsdUridine_synth_TruD	pfam_PsdUridine_synth_TruD,superfamily_PsdUridine_synth_cat_dom,pirsf_PsdUridine_synth_TruD_euk,pfscan_PsdUridine_synth_TruD_insert,tigrfam_PsdUridine_synth_TruD	-	no_errors	PUS7L	HGNC	ENSG00000129317				78	0	0	91	5	5.20833
RAD51AP1	0	genome.wustl.edu	37	12	4668105	4668106	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	4668105	4668106	-	T	INS	RAD51AP1	ENST00000228843	human	ensembl	74_37	+1	known	frame_shift_ins	c.1005_1006	p.L335fs	1.000:0.997	NULL	NULL	-	no_errors	RAD51AP1	HGNC	ENSG00000111247				74	0	0	53	19	26.3889
DYRK4	0	genome.wustl.edu	37	12	4719362	4719362	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	4719362	4719362	A	-	DEL	DYRK4	ENST00000010132	human	ensembl	74_37	+1	known	frame_shift_del	c.1057	p.R355fs	1.000	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	DYRK4	HGNC	ENSG00000010219				93	0	0	80	31	27.9279
LARP4	0	genome.wustl.edu	37	12	50847266	50847267	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	50847266	50847267	-	T	INS	LARP4	ENST00000429001	human	ensembl	74_37	+1	known	frame_shift_ins	c.846_847	p.A284fs	0.557:0.998	NULL	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP4	HGNC	ENSG00000161813				82	0	0	60	18	23.0769
SLC4A8	0	genome.wustl.edu	37	12	51844775	51844775	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	51844775	51844775	G	-	DEL	SLC4A8	ENST00000453097	human	ensembl	74_37	+1	known	frame_shift_del	c.246	p.E84fs	1.000	NULL	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A8	HGNC	ENSG00000050438				8	0	0	4	4	50
OR6C75	0	genome.wustl.edu	37	12	55759486	55759486	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	55759486	55759486	T	-	DEL	OR6C75	ENST00000343399	human	ensembl	74_37	+1	known	frame_shift_del	c.592	p.L200fs	0.582	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6C75	HGNC	ENSG00000187857				102	0	0	56	67	54.4715
ITGA7	0	genome.wustl.edu	37	12	56094788	56094788	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	56094788	56094788	G	-	DEL	ITGA7	ENST00000555728	human	ensembl	74_37	-1	known	frame_shift_del	c.565	p.Q189fs	1.000	NULL	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA7	HGNC	ENSG00000135424				52	0	0	60	17	22.0779
CDK2	0	genome.wustl.edu	37	12	56362650	56362650	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	56362650	56362650	T	-	DEL	CDK2	ENST00000266970	human	ensembl	74_37	+1	known	frame_shift_del	c.404	p.N136fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK2	HGNC	ENSG00000123374				100	0	0	99	39	28.2609
SMARCC2	0	genome.wustl.edu	37	12	56559113	56559113	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	56559113	56559113	G	-	DEL	SMARCC2	ENST00000267064	human	ensembl	74_37	-1	known	frame_shift_del	c.3128	p.P1043fs	1.000	NULL	pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,superfamily_BRCT_dom,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_SANT/Myb,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	SMARCC2	HGNC	ENSG00000139613				40	0	0	38	13	25.4902
R3HDM2	0	genome.wustl.edu	37	12	57674204	57674205	+	In_Frame_Ins	INS	-	-	TGC			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	57674204	57674205	-	TGC	INS	R3HDM2	ENST00000347140	human	ensembl	74_37	-1	known	in_frame_ins	c.1239_1238	p.414in_frame_insQ	0.994:0.998	NULL	pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd	-	no_errors	R3HDM2	HGNC	ENSG00000179912				72	0	0	81	5	5.81395
MBD6	0	genome.wustl.edu	37	12	57921401	57921401	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	57921401	57921401	C	-	DEL	MBD6	ENST00000355673	human	ensembl	74_37	+1	known	frame_shift_del	c.2194	p.Q734fs	1.000	NULL	superfamily_DNA-bd_dom,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MBD6	HGNC	ENSG00000166987				102	0	0	104	42	28.7671
ARHGEF25	0	genome.wustl.edu	37	12	58004353	58004353	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	58004353	58004353	C	-	DEL	ARHGEF25	ENST00000333972	human	ensembl	74_37	+1	known	frame_shift_del	c.100	p.P35fs	0.892	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF25	HGNC	ENSG00000240771				28	0	0	20	6	23.0769
MON2	0	genome.wustl.edu	37	12	62960172	62960172	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	62960172	62960172	A	-	DEL	MON2	ENST00000393630	human	ensembl	74_37	+1	known	frame_shift_del	c.4268	p.T1425fs	1.000	superfamily_ARM-type_fold	pfam_DUF1981_Sec7_assoc,superfamily_ARM-type_fold	-	no_errors	MON2	HGNC	ENSG00000061987				101	0	0	91	32	26.0163
ZNF384	0	genome.wustl.edu	37	12	6787521	6787521	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	6787521	6787521	G	-	DEL	ZNF384	ENST00000361959	human	ensembl	74_37	-1	known	frame_shift_del	c.458	p.P153fs	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF384	HGNC	ENSG00000126746				45	0	0	43	8	15.6863
CEP290	0	genome.wustl.edu	37	12	88524079	88524079	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	12	88524079	88524079	T	-	DEL	CEP290	ENST00000309041	human	ensembl	74_37	-1	known	frame_shift_del	c.635	p.N212fs	1.000	NULL	NULL	-	no_errors	CEP290	HGNC	ENSG00000198707				139	0	0	117	42	26.4151
UPF3A	0	genome.wustl.edu	37	13	115057211	115057211	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	13	115057211	115057211	A	-	DEL	UPF3A	ENST00000375299	human	ensembl	74_37	+1	known	frame_shift_del	c.790	p.E267fs	0.943	NULL	pfam_Nonsense_mediated_decay_UPF3	-	no_errors	UPF3A	HGNC	ENSG00000169062				19	0	0	13	8	38.0952
ATP12A	0	genome.wustl.edu	37	13	25255819	25255820	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	13	25255819	25255820	-	A	INS	ATP12A	ENST00000218548	human	ensembl	74_37	+1	known	frame_shift_ins	c.129_130	p.N44fs	0.269:0.026	tigrfam_ATPase_P-typ_Na/K_IIC	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP12A	HGNC	ENSG00000075673				95	0	0	94	20	17.5439
PDS5B	0	genome.wustl.edu	37	13	33344580	33344580	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	13	33344580	33344580	A	-	DEL	PDS5B	ENST00000315596	human	ensembl	74_37	+1	known	frame_shift_del	c.3946	p.K1318fs	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	PDS5B	HGNC	ENSG00000083642				48	0	0	63	16	20.2532
NBEA	0	genome.wustl.edu	37	13	35733663	35733663	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	13	35733663	35733663	A	-	DEL	NBEA	ENST00000310336	human	ensembl	74_37	+1	known	frame_shift_del	c.3355	p.N1121fs	1.000	NULL	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl_sf,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat_dom	-	no_errors	NBEA	HGNC	ENSG00000172915				46	0	0	38	14	26.9231
LRRC63	0	genome.wustl.edu	37	13	46844471	46844471	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	13	46844471	46844471	G	-	DEL	LRRC63	ENST00000446175	human	ensembl	74_37	+1	known	frame_shift_del	c.1553	p.A520fs	0.849	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC63	HGNC	ENSG00000173988				62	0	0	65	16	19.7531
LMO7	0	genome.wustl.edu	37	13	76415964	76415965	+	Frame_Shift_Ins	INS	-	-	GA			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	13	76415964	76415965	-	GA	INS	LMO7	ENST00000357063	human	ensembl	74_37	+1	known	frame_shift_ins	c.4032_4033	p.R1348fs	0.012:0.744	NULL	pfam_CH-domain,pfam_PDZ,superfamily_CH-domain,superfamily_PDZ,smart_CH-domain,smart_PDZ,pfscan_CH-domain,pfscan_PDZ,prints_SM22_calponin	-	no_errors	LMO7	HGNC	ENSG00000136153				62	0	0	62	7	10.1449
EDNRB	0	genome.wustl.edu	37	13	78475267	78475267	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	13	78475267	78475267	A	-	DEL	EDNRB	ENST00000334286	human	ensembl	74_37	-1	known	frame_shift_del	c.877	p.Y293fs	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Endthln_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_ETB_rcpt,prints_Endthln_rcpt,prints_GPCR_Rhodpsn,prints_Bombsn_rcpt	-	no_errors	EDNRB	HGNC	ENSG00000136160				47	0	0	51	26	33.7662
DOCK9	0	genome.wustl.edu	37	13	99502312	99502312	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	13	99502312	99502312	A	-	DEL	DOCK9	ENST00000339416	human	ensembl	74_37	-1	known	frame_shift_del	c.4005	p.F1335fs	1.000	superfamily_ARM-type_fold	pfam_DOCK_C,pfam_DOCK_C/D_N,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK9	HGNC	ENSG00000088387				9	0	0	8	6	42.8571
YY1	0	genome.wustl.edu	37	14	100728643	100728644	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	100728643	100728644	-	A	INS	YY1	ENST00000262238	human	ensembl	74_37	+1	known	frame_shift_ins	c.682_683	p.D231fs	1.000:1.000	pirsf_TF_Yin_yang	pfam_Znf_C2H2,smart_Znf_C2H2-like,pirsf_TF_Yin_yang,pfscan_Znf_C2H2	-	no_errors	YY1	HGNC	ENSG00000100811				61	0	0	60	21	25.9259
MIR543	0	genome.wustl.edu	37	14	101498346	101498347	+	RNA	INS	-	-	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	101498346	101498347	-	T	INS	MIR543	ENST00000390751	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.995:0.956	-	-	-	no_errors	MIR543	HGNC	ENSG00000212040				51	0	0	50	14	21.875
ADSSL1	0	genome.wustl.edu	37	14	105207521	105207522	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	105207521	105207522	-	C	INS	ADSSL1	ENST00000332972	human	ensembl	74_37	+1	known	frame_shift_ins	c.863_864	p.K291fs	1.000:0.000	pfam_Adenylosuccinate_synthetase,superfamily_P-loop_NTPase,smart_Adenylosuccinate_synthetase,tigrfam_Adenylosuccinate_synthetase	pfam_Adenylosuccinate_synthetase,superfamily_P-loop_NTPase,smart_Adenylosuccinate_synthetase,tigrfam_Adenylosuccinate_synthetase	-	no_errors	ADSSL1	HGNC	ENSG00000185100				45	0	0	30	6	16.6667
APEX1	0	genome.wustl.edu	37	14	20925577	20925578	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	20925577	20925578	CT	-	DEL	APEX1	ENST00000216714	human	ensembl	74_37	+1	known	frame_shift_del	c.867_868	p.L291fs	0.003:0.338	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,tigrfam_AP_endonuc_1	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,tigrfam_AP_endonuc_1	-	no_errors	APEX1	HGNC	ENSG00000100823				174	0	0	158	60	27.5229
HOMEZ	0	genome.wustl.edu	37	14	23745310	23745310	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	23745310	23745310	A	-	DEL	HOMEZ	ENST00000431326	human	ensembl	74_37	-1	known	frame_shift_del	c.1133	p.L378fs	1.000	superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	HOMEZ	HGNC	ENSG00000215271				54	0	0	44	22	33.3333
CPNE6	0	genome.wustl.edu	37	14	24542775	24542776	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	24542775	24542776	-	T	INS	CPNE6	ENST00000537691	human	ensembl	74_37	+1	known	frame_shift_ins	c.401_402	p.E137fs	1.000:1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom	pfam_Copine,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,smart_VWF_A,pfscan_C2_dom,pfscan_VWF_A	-	no_errors	CPNE6	HGNC	ENSG00000100884				68	0	0	61	12	16.4384
C14orf23	0	genome.wustl.edu	37	14	29261305	29261305	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	29261305	29261305	A	-	DEL	C14orf23	ENST00000399387	human	ensembl	74_37	+1	known	frame_shift_del	c.342	p.T117fs	0.707	NULL	NULL	-	no_errors	C14orf23	HGNC	ENSG00000186960				14	0	0	10	5	33.3333
G2E3	0	genome.wustl.edu	37	14	31071214	31071214	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	31071214	31071214	A	-	DEL	G2E3	ENST00000206595	human	ensembl	74_37	+1	known	frame_shift_del	c.887	p.A298fs	0.998	NULL	pfam_HECT,superfamily_HECT,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_HECT,pfscan_HECT	-	no_errors	G2E3	HGNC	ENSG00000092140				42	0	0	39	16	29.0909
G2E3	0	genome.wustl.edu	37	14	31074772	31074772	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	31074772	31074772	A	-	DEL	G2E3	ENST00000206595	human	ensembl	74_37	+1	known	frame_shift_del	c.1072	p.T361fs	0.994	superfamily_HECT	pfam_HECT,superfamily_HECT,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_HECT,pfscan_HECT	-	no_errors	G2E3	HGNC	ENSG00000092140				21	0	0	18	9	33.3333
MIA2	0	genome.wustl.edu	37	14	39703406	39703406	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	39703406	39703406	A	-	DEL	MIA2	ENST00000556784	human	ensembl	74_37	+1	putative	frame_shift_del	c.88	p.K31fs	0.987	superfamily_SH3_domain	pfam_SH3_2,superfamily_SH3_domain	-	no_errors	MIA2	HGNC	ENSG00000150526				64	0	0	68	8	10.5263
FANCM	0	genome.wustl.edu	37	14	45642287	45642288	+	Frame_Shift_Ins	INS	-	-	CT			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	45642287	45642288	-	CT	INS	FANCM	ENST00000267430	human	ensembl	74_37	+1	known	frame_shift_ins	c.2190_2191	p.S734fs	0.714:0.999	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Restrct_endonuc-II-like,superfamily_RuvA_2-like,smart_Helicase_ATP-bd,smart_Helicase_C,smart_ERCC4_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	FANCM	HGNC	ENSG00000187790				67	0	0	71	20	21.978
SOS2	0	genome.wustl.edu	37	14	50605444	50605445	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	50605444	50605445	-	T	INS	SOS2	ENST00000216373	human	ensembl	74_37	-1	known	frame_shift_ins	c.2844_2843	p.K949fs	1.000:1.000	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Histone_core_D,superfamily_Ras_GEF_dom,superfamily_Histone-fold,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	SOS2	HGNC	ENSG00000100485				33	0	0	30	9	23.0769
NID2	0	genome.wustl.edu	37	14	52481919	52481919	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	52481919	52481919	G	-	DEL	NID2	ENST00000216286	human	ensembl	74_37	-1	known	frame_shift_del	c.3103	p.R1035fs	0.061	pfam_Thyroglobulin_1,superfamily_Thyroglobulin_1,pfscan_Thyroglobulin_1	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd_dom,superfamily_GFP,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EG-like_dom,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID2	HGNC	ENSG00000087303				41	0	0	35	11	23.913
FUT8	0	genome.wustl.edu	37	14	66082954	66082956	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	66082954	66082956	GAG	-	DEL	FUT8	ENST00000360689	human	ensembl	74_37	+1	known	in_frame_del	c.345_347	p.R118in_frame_del	0.975:0.997:1.000	pirsf_Alpha1_6FUT_euk	superfamily_SH3_domain,smart_SH3_domain,pirsf_Alpha1_6FUT_euk	-	no_errors	FUT8	HGNC	ENSG00000033170				77	0	0	56	15	21.1268
PAPLN	0	genome.wustl.edu	37	14	73718481	73718481	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	73718481	73718481	G	-	DEL	PAPLN	ENST00000427855	human	ensembl	74_37	+1	known	frame_shift_del	c.780	p.D262fs	1.000	pfam_ADAM_spacer1	pfam_Ig_I-set,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_Prot_inh_Kunz-m,pfam_PLAC,superfamily_Prot_inh_Kunz-m,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Prot_inh_Kunz-m,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Prot_inh_Kunz-m,pfscan_Ig-like_dom,prints_Peptidase_M12B_ADAM-TS,prints_Prot_inh_Kunz-m	-	no_errors	PAPLN	HGNC	ENSG00000100767				22	0	0	22	3	12
ELMSAN1	0	genome.wustl.edu	37	14	74205773	74205773	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	74205773	74205773	G	-	DEL	ELMSAN1	ENST00000286523	human	ensembl	74_37	-1	known	frame_shift_del	c.939	p.N314fs	0.000	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	ELMSAN1	HGNC	ENSG00000156030				13	0	0	15	8	34.7826
YLPM1	0	genome.wustl.edu	37	14	75265533	75265533	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	75265533	75265533	A	-	DEL	YLPM1	ENST00000325680	human	ensembl	74_37	+1	known	frame_shift_del	c.3533	p.M1180fs	1.000	NULL	superfamily_P-loop_NTPase	-	no_errors	YLPM1	HGNC	ENSG00000119596				77	0	0	77	22	22.2222
FLRT2	0	genome.wustl.edu	37	14	86088949	86088949	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	86088949	86088949	C	-	DEL	FLRT2	ENST00000330753	human	ensembl	74_37	+1	known	frame_shift_del	c.1091	p.G366fs	0.894	NULL	pfam_Leu-rich_rpt,pfam_Fibronectin_type3,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Fibronectin_type3	-	no_errors	FLRT2	HGNC	ENSG00000185070				79	0	0	85	28	24.7788
UNC79	0	genome.wustl.edu	37	14	94088050	94088050	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	14	94088050	94088050	A	-	DEL	UNC79	ENST00000553484	human	ensembl	74_37	+1	known	frame_shift_del	c.4537	p.K1515fs	1.000	superfamily_ARM-type_fold	superfamily_P-loop_NTPase,superfamily_ARM-type_fold	-	no_errors	UNC79	HGNC	ENSG00000133958				65	0	0	63	17	21.25
WASH3P	0	genome.wustl.edu	37	15	102516488	102516488	+	RNA	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	102516488	102516488	C	-	DEL	WASH3P	ENST00000557932	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	WASH3P	HGNC	ENSG00000185596				45	0	0	72	5	6.49351
SLC12A6	0	genome.wustl.edu	37	15	34549916	34549916	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	34549916	34549916	A	-	DEL	SLC12A6	ENST00000558589	human	ensembl	74_37	-1	known	frame_shift_del	c.590	p.L197fs	1.000	pfam_AA-permease/SLC12A_dom,tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,pfam_K/Cl_cotranspt_1/3,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A6	HGNC	ENSG00000140199				64	0	0	54	18	25
MEIS2	0	genome.wustl.edu	37	15	37329090	37329090	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	37329090	37329090	T	-	DEL	MEIS2	ENST00000561208	human	ensembl	74_37	-1	known	frame_shift_del	c.825	p.K275fs	1.000	superfamily_Homeodomain-like,pfscan_Homeobox_dom	pfam_Homeobox_dom,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	MEIS2	HGNC	ENSG00000134138				88	0	0	75	28	27.1845
RTF1	0	genome.wustl.edu	37	15	41749961	41749963	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	41749961	41749963	AGA	-	DEL	RTF1	ENST00000389629	human	ensembl	74_37	+1	known	in_frame_del	c.549_551	p.E184in_frame_del	0.997:1.000:1.000	NULL	pfam_Plus-3,smart_Plus3-dom_subgr	-	no_errors	RTF1	HGNC	ENSG00000137815				133	0	0	135	46	25.4144
DYX1C1	0	genome.wustl.edu	37	15	55759182	55759182	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	55759182	55759182	T	-	DEL	DYX1C1	ENST00000321149	human	ensembl	74_37	-1	known	frame_shift_del	c.583	p.I195fs	0.004	NULL	pfam_TPR_1,pfam_CS_dom,superfamily_HSP20-like_chaperone,smart_TPR_repeat,pfscan_CS_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	DYX1C1	HGNC	ENSG00000256061				25	0	0	27	7	20.5882
TRIP4	0	genome.wustl.edu	37	15	64686305	64686305	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	64686305	64686305	A	-	DEL	TRIP4	ENST00000261884	human	ensembl	74_37	+1	known	frame_shift_del	c.262	p.D90fs	0.948	NULL	pfam_ASCH_domain,pfam_Znf_C2HC5,superfamily_PUA-like_domain	-	no_errors	TRIP4	HGNC	ENSG00000103671				31	0	0	32	13	28.8889
IGDCC4	0	genome.wustl.edu	37	15	65678319	65678319	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	65678319	65678319	G	-	DEL	IGDCC4	ENST00000352385	human	ensembl	74_37	-1	novel	frame_shift_del	c.3030	p.S1011fs	0.001	NULL	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	IGDCC4	HGNC	ENSG00000103742				19	0	0	11	3	21.4286
IGDCC4	0	genome.wustl.edu	37	15	65686807	65686807	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	65686807	65686807	G	-	DEL	IGDCC4	ENST00000352385	human	ensembl	74_37	-1	novel	frame_shift_del	c.1656	p.S553fs	0.757	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	IGDCC4	HGNC	ENSG00000103742				89	0	0	90	5	5.26316
MEGF11	0	genome.wustl.edu	37	15	66220800	66220800	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	66220800	66220800	G	-	DEL	MEGF11	ENST00000409699	human	ensembl	74_37	-1	known	frame_shift_del	c.1638	p.V547fs	0.034	smart_EG-like_dom,smart_EGF_laminin	pfam_EGF_laminin,pfam_EGF_extracell,smart_EG-like_dom,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_EMI_domain	-	no_errors	MEGF11	HGNC	ENSG00000157890				53	0	0	42	7	14.2857
SPESP1	0	genome.wustl.edu	37	15	69238555	69238555	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	69238555	69238555	A	-	DEL	SPESP1	ENST00000310673	human	ensembl	74_37	+1	known	frame_shift_del	c.682	p.I230fs	0.337	NULL	NULL	-	no_errors	SPESP1	HGNC	ENSG00000258484				101	0	0	77	24	23.7624
UACA	0	genome.wustl.edu	37	15	70961075	70961076	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	70961075	70961076	-	T	INS	UACA	ENST00000322954	human	ensembl	74_37	-1	known	frame_shift_ins	c.1948_1947	p.L649fs	0.001:0.012	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Prefoldin,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_T_SNARE_dom,prints_Ankyrin_rpt	-	no_errors	UACA	HGNC	ENSG00000137831				68	0	0	53	16	23.1884
NEIL1	0	genome.wustl.edu	37	15	75644674	75644674	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	75644674	75644674	C	-	DEL	NEIL1	ENST00000355059	human	ensembl	74_37	+1	known	frame_shift_del	c.564	p.F191fs	1.000	pfam_DNA_glyclase/AP_lyase_DNA-bd,superfamily_Ribosomal_S13-like_H2TH	pfam_Endonuclease-VIII_DNA-bd,pfam_DNA_glycosylase/AP_lyase_cat,pfam_DNA_glyclase/AP_lyase_DNA-bd,superfamily_DNA_glycosylase/AP_lyase_cat,superfamily_Ribosomal_S13-like_H2TH,smart_DNA_glycosylase/AP_lyase_cat,pfscan_DNA_glycosylase/AP_lyase_cat	-	no_errors	NEIL1	HGNC	ENSG00000140398				63	0	0	45	11	19.6429
FSD2	0	genome.wustl.edu	37	15	83434691	83434691	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	83434691	83434691	C	-	DEL	FSD2	ENST00000334574	human	ensembl	74_37	-1	known	frame_shift_del	c.1646	p.G549fs	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,prints_Butyrophylin	-	no_errors	FSD2	HGNC	ENSG00000186628				8	0	0	12	2	14.2857
BTBD1	0	genome.wustl.edu	37	15	83725144	83725147	+	Frame_Shift_Del	DEL	AGTA	AGTA	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	AGTA	AGTA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	83725144	83725147	AGTA	-	DEL	BTBD1	ENST00000261721	human	ensembl	74_37	-1	known	frame_shift_del	c.555_552	p.T185fs	0.981:1.000:0.999:0.009	pfam_BACK,smart_BACK	pfam_PHR,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD1	HGNC	ENSG00000064726				51	0	0	36	11	23.4043
TM6SF1	0	genome.wustl.edu	37	15	83805312	83805312	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	83805312	83805312	T	-	DEL	TM6SF1	ENST00000379386	human	ensembl	74_37	+1	known	frame_shift_del	c.1010	p.L339fs	0.172	pfam_Transmembrane_6/97	pfam_Transmembrane_6/97	-	no_errors	TM6SF1	HGNC	ENSG00000136404				91	0	0	89	41	31.5385
PDE8A	0	genome.wustl.edu	37	15	85634360	85634360	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	15	85634360	85634360	A	-	DEL	PDE8A	ENST00000310298	human	ensembl	74_37	+1	known	frame_shift_del	c.800	p.K269fs	1.000	pfam_PAS_fold,pfam_PAS_4,superfamily_PAS,pfscan_PAS,tigrfam_PAS	pfam_PDEase_catalytic_dom,pfam_Sig_transdc_resp-reg_receiver,pfam_PAS_fold,pfam_PAS_4,superfamily_PAS,superfamily_CheY-like_superfamily,smart_HD/PDEase_dom,pfscan_PAS,prints_PDEase,tigrfam_PAS	-	no_errors	PDE8A	HGNC	ENSG00000073417				56	0	0	55	25	31.25
TVP23A	0	genome.wustl.edu	37	16	10867203	10867203	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	10867203	10867203	A	-	DEL	TVP23A	ENST00000299866	human	ensembl	74_37	-1	known	frame_shift_del	c.420	p.F140fs	1.000	pfam_DUF846_euk	pfam_DUF846_euk	-	no_errors	TVP23A	HGNC	ENSG00000166676				73	0	0	74	34	31.4815
UNKL	0	genome.wustl.edu	37	16	1417261	1417263	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	1417261	1417263	CTT	-	DEL	UNKL	ENST00000389221	human	ensembl	74_37	-1	known	in_frame_del	c.1869_1867	p.K623in_frame_del	1.000:1.000:1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH,pfscan_Znf_RING	-	no_errors	UNKL	HGNC	ENSG00000059145				8	0	0	3	2	40
KIAA0430	0	genome.wustl.edu	37	16	15690765	15690765	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	15690765	15690765	T	-	DEL	KIAA0430	ENST00000396368	human	ensembl	74_37	-1	known	frame_shift_del	c.5014	p.M1672fs	0.000	NULL	pfam_Limkain_b1_cons_dom,pfam_NYN_limkain-b1,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	KIAA0430	HGNC	ENSG00000166783				44	0	0	41	8	16.3265
DNAH3	0	genome.wustl.edu	37	16	21008625	21008625	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	21008625	21008625	C	-	DEL	DNAH3	ENST00000261383	human	ensembl	74_37	-1	known	frame_shift_del	c.6581	p.G2194fs	1.000	pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486				43	0	0	46	13	22.0339
ARHGAP17	0	genome.wustl.edu	37	16	24958802	24958802	+	Splice_Site	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	24958802	24958802	C	-	DEL	ARHGAP17	ENST00000289968	human	ensembl	74_37	-1	known	splice_site_del	c.1241+1	e14+1	1.000	-	-	-	no_errors	ARHGAP17	HGNC	ENSG00000140750				37	0	0	37	15	28.8462
ATXN2L	0	genome.wustl.edu	37	16	28847350	28847350	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	28847350	28847350	G	-	DEL	ATXN2L	ENST00000395547	human	ensembl	74_37	+1	known	frame_shift_del	c.2992	p.1002fs	1.000	NULL	pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom	-	no_errors	ATXN2L	HGNC	ENSG00000168488				44	0	0	29	5	14.7059
PRRT2	0	genome.wustl.edu	37	16	29825016	29825016	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	29825016	29825016	C	-	DEL	PRRT2	ENST00000567659	human	ensembl	74_37	+1	known	frame_shift_del	c.641	p.R217fs	1.000	NULL	pfam_CD225/Dispanin_fam	-	no_errors	PRRT2	HGNC	ENSG00000167371				10	0	0	15	4	21.0526
ZNF48	0	genome.wustl.edu	37	16	30409310	30409310	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	30409310	30409310	C	-	DEL	ZNF48	ENST00000320159	human	ensembl	74_37	+1	known	frame_shift_del	c.739	p.R249fs	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF48	HGNC	ENSG00000180035				33	0	0	29	8	21.6216
ITGAL	0	genome.wustl.edu	37	16	30490784	30490785	+	Splice_Site	INS	-	-	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	30490784	30490785	-	A	INS	ITGAL	ENST00000356798	human	ensembl	74_37	+1	known	splice_site_ins	c.576+2_576+1	e6+2	0.991:0.512	-	-	-	no_errors	ITGAL	HGNC	ENSG00000005844				30	0	0	34	7	17.0732
ZNF689	0	genome.wustl.edu	37	16	30616641	30616641	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	30616641	30616641	G	-	DEL	ZNF689	ENST00000287461	human	ensembl	74_37	-1	known	frame_shift_del	c.447	p.I150fs	0.998	smart_Znf_C2H2-like	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF689	HGNC	ENSG00000156853				92	0	0	66	30	31.25
NETO2	0	genome.wustl.edu	37	16	47120147	47120148	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	47120147	47120148	-	T	INS	NETO2	ENST00000562435	human	ensembl	74_37	-1	known	frame_shift_ins	c.987_986	p.N329fs	1.000:1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_CUB_dom,pfam_LDrepeatLR_classA_rpt,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt	-	no_errors	NETO2	HGNC	ENSG00000171208				48	0	0	54	13	19.403
PPL	0	genome.wustl.edu	37	16	4935689	4935689	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	4935689	4935689	C	-	DEL	PPL	ENST00000345988	human	ensembl	74_37	-1	known	frame_shift_del	c.2967	p.Q990fs	0.613	NULL	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	PPL	HGNC	ENSG00000118898				137	0	0	96	23	19.3277
CNOT1	0	genome.wustl.edu	37	16	58555109	58555110	+	In_Frame_Ins	INS	-	-	TAC			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	58555109	58555110	-	TAC	INS	CNOT1	ENST00000317147	human	ensembl	74_37	-1	known	in_frame_ins	c.7030_7029	p.2343in_frame_insV	1.000:1.000	pfam_CCR4-Not_Not1_C	pfam_CCR4-Not_Not1_C,superfamily_ARM-type_fold	-	no_errors	CNOT1	HGNC	ENSG00000125107				82	0	0	75	35	31.8182
CCDC79	0	genome.wustl.edu	37	16	66819754	66819754	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	66819754	66819754	T	-	DEL	CCDC79	ENST00000433154	human	ensembl	74_37	-1	known	frame_shift_del	c.635	p.N212fs	0.091	superfamily_ARM-type_fold	pfam_SANT/Myb,superfamily_ARM-type_fold,superfamily_Homeodomain-like,superfamily_Cytokine_IL1-like,smart_SANT/Myb	-	no_errors	CCDC79	HGNC	ENSG00000249961				9	0	0	10	2	16.6667
LRRC36	0	genome.wustl.edu	37	16	67397608	67397608	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	67397608	67397608	G	-	DEL	LRRC36	ENST00000329956	human	ensembl	74_37	+1	known	frame_shift_del	c.693	p.T233fs	0.406	NULL	NULL	-	no_errors	LRRC36	HGNC	ENSG00000159708				95	0	0	88	16	15.3846
GFOD2	0	genome.wustl.edu	37	16	67719395	67719395	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	67719395	67719395	G	-	DEL	GFOD2	ENST00000268797	human	ensembl	74_37	-1	known	frame_shift_del	c.224	p.P75fs	1.000	pfam_Oxidoreductase_N	pfam_Oxidoreductase_N	-	no_errors	GFOD2	HGNC	ENSG00000141098				26	0	0	34	11	24.4444
MARVELD3	0	genome.wustl.edu	37	16	71668441	71668442	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	71668441	71668442	-	G	INS	MARVELD3	ENST00000268485	human	ensembl	74_37	+1	known	frame_shift_ins	c.941_942	p.Y317fs	0.128:0.000	NULL	NULL	-	no_errors	MARVELD3	HGNC	ENSG00000140832				45	0	0	46	9	16.3636
TERF2IP	0	genome.wustl.edu	37	16	75690320	75690320	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	75690320	75690320	A	-	DEL	TERF2IP	ENST00000300086	human	ensembl	74_37	+1	known	frame_shift_del	c.1011	p.N339fs	0.723	NULL	pfam_Rap1_Myb_dom,superfamily_Homeodomain-like,superfamily_BRCT_dom	-	no_errors	TERF2IP	HGNC	ENSG00000166848				221	0	0	219	92	29.582
ADAMTS18	0	genome.wustl.edu	37	16	77356311	77356311	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	77356311	77356311	A	-	DEL	ADAMTS18	ENST00000282849	human	ensembl	74_37	-1	known	frame_shift_del	c.2085	p.F695fs	0.998	NULL	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS18	HGNC	ENSG00000140873				121	0	0	68	52	43.3333
GSE1	0	genome.wustl.edu	37	16	85682289	85682290	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	16	85682289	85682290	-	C	INS	GSE1	ENST00000253458	human	ensembl	74_37	+1	known	frame_shift_ins	c.358_359	p.V123fs	1.000:0.999	pfam_GSE-like	pfam_GSE-like	-	no_errors	GSE1	HGNC	ENSG00000131149				38	0	0	35	6	14.6341
ELAC2	0	genome.wustl.edu	37	17	12919107	12919108	+	Frame_Shift_Del	DEL	AC	AC	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	12919107	12919108	AC	-	DEL	ELAC2	ENST00000338034	human	ensembl	74_37	-1	known	frame_shift_del	c.410_409	p.V137fs	0.995:1.000	NULL	pfam_Beta-lactamas-like	-	no_errors	ELAC2	HGNC	ENSG00000006744				98	0	0	98	33	25.1908
WDR81	0	genome.wustl.edu	37	17	1638935	1638935	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	1638935	1638935	C	-	DEL	WDR81	ENST00000409644	human	ensembl	74_37	+1	known	frame_shift_del	c.5249	p.H1752fs	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Kinase-like_dom,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR81	HGNC	ENSG00000167716				37	0	0	29	5	14.7059
MPRIP	0	genome.wustl.edu	37	17	17046886	17046886	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	17046886	17046886	C	-	DEL	MPRIP	ENST00000395811	human	ensembl	74_37	+1	known	frame_shift_del	c.1052	p.P353fs	0.999	NULL	pfam_Pleckstrin_homology,superfamily_Ferritin-like_SF,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	MPRIP	HGNC	ENSG00000133030				21	0	0	20	7	25.9259
RAI1	0	genome.wustl.edu	37	17	17696624	17696624	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	17696624	17696624	G	-	DEL	RAI1	ENST00000353383	human	ensembl	74_37	+1	known	frame_shift_del	c.362	p.A123fs	1.000	NULL	smart_Znf_PHD	-	no_errors	RAI1	HGNC	ENSG00000108557				12	0	0	15	5	25
SPECC1	0	genome.wustl.edu	37	17	20107654	20107656	+	In_Frame_Del	DEL	ACA	ACA	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	ACA	ACA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	20107654	20107656	ACA	-	DEL	SPECC1	ENST00000261503	human	ensembl	74_37	+1	known	in_frame_del	c.292_294	p.T100in_frame_del	0.000:0.021:0.001	NULL	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	SPECC1	HGNC	ENSG00000128487				281	0	0	238	72	23.2258
CCDC144CP	0	genome.wustl.edu	37	17	20239466	20239466	+	RNA	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	20239466	20239466	A	-	DEL	CCDC144CP	ENST00000340196	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CCDC144CP	HGNC	ENSG00000154898				32	0	0	37	4	9.7561
UBBP4	0	genome.wustl.edu	37	17	21731489	21731489	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	21731489	21731489	C	-	DEL	UBBP4	ENST00000578713	human	ensembl	74_37	+1	putative	frame_shift_del	c.564	p.D191fs	1.000	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup,prints_Ubiquitin	-	no_errors	UBBP4	HGNC	ENSG00000263563				63	0	0	59	16	21.3333
METTL16	0	genome.wustl.edu	37	17	2323660	2323660	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	2323660	2323660	G	-	DEL	METTL16	ENST00000263092	human	ensembl	74_37	-1	known	frame_shift_del	c.1293	p.C432fs	0.000	pirsf_S-AdoMet-dep_MeTrfase_Mett10D	pfam_rRNA_lsu_MeTfrase_F-like,pirsf_S-AdoMet-dep_MeTrfase_Mett10D	-	no_errors	METTL16	HGNC	ENSG00000127804				57	0	0	47	10	17.5439
PAFAH1B1	0	genome.wustl.edu	37	17	2570437	2570437	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	2570437	2570437	T	-	DEL	PAFAH1B1	ENST00000397195	human	ensembl	74_37	+1	known	frame_shift_del	c.344	p.F116fs	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Dynein_regulator_LIS1,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_LisH_dimerisation_subgr,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_WD40_repeat,pirsf_Dynein_regulator_LIS1,pfscan_LisH_dimerisation,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PAFAH1B1	HGNC	ENSG00000007168				70	0	0	74	15	16.8539
NSRP1	0	genome.wustl.edu	37	17	28505167	28505167	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	28505167	28505167	A	-	DEL	NSRP1	ENST00000247026	human	ensembl	74_37	+1	known	frame_shift_del	c.250	p.K86fs	1.000	pfam_DUF2040	pfam_DUF2040	-	no_errors	NSRP1	HGNC	ENSG00000126653				79	0	0	49	18	26.8657
NF1	0	genome.wustl.edu	37	17	29684298	29684298	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	29684298	29684298	A	-	DEL	NF1	ENST00000358273	human	ensembl	74_37	+1	known	frame_shift_del	c.7881	p.K2628fs	0.953	superfamily_ARM-type_fold	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	-	no_errors	NF1	HGNC	ENSG00000196712				38	0	0	33	13	28.2609
SLC35G3	0	genome.wustl.edu	37	17	33520676	33520676	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	33520676	33520676	G	-	DEL	SLC35G3	ENST00000297307	human	ensembl	74_37	-1	known	frame_shift_del	c.651	p.C218fs	0.992	NULL	pfam_DMT	-	no_errors	SLC35G3	HGNC	ENSG00000164729				105	0	0	86	14	14
KRTAP4-1	0	genome.wustl.edu	37	17	39340921	39340921	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	39340921	39340921	G	-	DEL	KRTAP4-1	ENST00000398472	human	ensembl	74_37	-1	known	frame_shift_del	c.186	p.S63fs	0.859	pfam_Keratin-assoc	pfam_Keratin-assoc	-	no_errors	KRTAP4-1	HGNC	ENSG00000198443				75	0	0	61	4	6.15385
NBR2	0	genome.wustl.edu	37	17	41297124	41297124	+	RNA	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	41297124	41297124	A	-	DEL	NBR2	ENST00000460115	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.987	-	-	-	no_errors	NBR2	HGNC	ENSG00000198496				23	0	0	19	9	32.1429
MPP2	0	genome.wustl.edu	37	17	41959741	41959741	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	41959741	41959741	G	-	DEL	MPP2	ENST00000461854	human	ensembl	74_37	-1	known	frame_shift_del	c.664	p.R222fs	0.739	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_GK/Ca_channel_bsu,pfam_L27_C,pfam_SH3_2,pfam_PDZ,pfam_SH3_domain,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	MPP2	HGNC	ENSG00000108852				50	0	0	45	13	22.4138
ALOX15	0	genome.wustl.edu	37	17	4539247	4539247	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	4539247	4539247	G	-	DEL	ALOX15	ENST00000545513	human	ensembl	74_37	-1	known	frame_shift_del	c.1034	p.T345fs	0.000	pfam_LipOase_C,superfamily_LipOase_C	pfam_LipOase_C,pfam_PLAT/LH2_dom,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom,prints_LipOase_mml,prints_LipOase_C	-	no_errors	ALOX15	HGNC	ENSG00000161905				45	0	0	50	11	18.0328
XYLT2	0	genome.wustl.edu	37	17	48433967	48433967	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	48433967	48433967	C	-	DEL	XYLT2	ENST00000017003	human	ensembl	74_37	+1	known	frame_shift_del	c.1578	p.G529fs	1.000	pfam_XylT	pfam_XylT,pfam_Glyco_trans_14	-	no_errors	XYLT2	HGNC	ENSG00000015532				54	0	0	57	13	18.5714
RNF43	0	genome.wustl.edu	37	17	56435161	56435161	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	56435161	56435161	C	-	DEL	RNF43	ENST00000407977	human	ensembl	74_37	-1	known	frame_shift_del	c.1976	p.G659fs	0.900	NULL	pfam_Znf_C3HC4_RING-type,superfamily_PAS,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF43	HGNC	ENSG00000108375				86	0	0	70	25	26.3158
RNF43	0	genome.wustl.edu	37	17	56435355	56435357	+	In_Frame_Del	DEL	AGG	AGG	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	56435355	56435357	AGG	-	DEL	RNF43	ENST00000407977	human	ensembl	74_37	-1	known	in_frame_del	c.1782_1780	p.P594in_frame_del	0.010:0.011:0.013	NULL	pfam_Znf_C3HC4_RING-type,superfamily_PAS,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF43	HGNC	ENSG00000108375				111	0	0	87	25	22.3214
MTMR4	0	genome.wustl.edu	37	17	56590291	56590291	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	56590291	56590291	C	-	DEL	MTMR4	ENST00000323456	human	ensembl	74_37	-1	known	frame_shift_del	c.15	p.S8fs	0.999	NULL	pfam_Myotubularin-like_Pase_dom,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Tyr/Dual-sp_Pase	-	no_errors	MTMR4	HGNC	ENSG00000108389				53	0	0	33	16	32.6531
VMP1	0	genome.wustl.edu	37	17	57917177	57917178	+	Frame_Shift_Del	DEL	GT	GT	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	57917177	57917178	GT	-	DEL	VMP1	ENST00000262291	human	ensembl	74_37	+1	known	frame_shift_del	c.1126_1127	p.C377fs	1.000:1.000	NULL	NULL	-	no_errors	VMP1	HGNC	ENSG00000062716				202	0	0	186	50	21.1864
POLG2	0	genome.wustl.edu	37	17	62492629	62492630	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	62492629	62492630	AG	-	DEL	POLG2	ENST00000539111	human	ensembl	74_37	-1	known	frame_shift_del	c.458_457	p.L153fs	0.018:0.010	NULL	pfam_Anticodon-bd,superfamily_Anticodon-bd	-	no_errors	POLG2	HGNC	ENSG00000256525				104	0	0	94	42	30.8824
TXNDC17	0	genome.wustl.edu	37	17	6544520	6544520	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	6544520	6544520	A	-	DEL	TXNDC17	ENST00000250101	human	ensembl	74_37	+1	known	frame_shift_del	c.118	p.S41fs	0.205	pfam_DUF953_thioredox,superfamily_Thioredoxin-like_fold	pfam_DUF953_thioredox,superfamily_Thioredoxin-like_fold	-	no_errors	TXNDC17	HGNC	ENSG00000129235				62	0	0	37	14	27.451
SDK2	0	genome.wustl.edu	37	17	71394282	71394282	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	71394282	71394282	G	-	DEL	SDK2	ENST00000392650	human	ensembl	74_37	-1	known	frame_shift_del	c.3246	p.S1083fs	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	SDK2	HGNC	ENSG00000069188				29	0	0	29	8	21.6216
CD300C	0	genome.wustl.edu	37	17	72541038	72541038	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	72541038	72541038	C	-	DEL	CD300C	ENST00000330793	human	ensembl	74_37	-1	known	frame_shift_del	c.110	p.G37fs	0.667	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	CD300C	HGNC	ENSG00000167850				43	0	0	32	10	23.8095
SLC16A5	0	genome.wustl.edu	37	17	73094188	73094188	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	73094188	73094188	G	-	DEL	SLC16A5	ENST00000329783	human	ensembl	74_37	+1	known	frame_shift_del	c.255	p.G87fs	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt	-	no_errors	SLC16A5	HGNC	ENSG00000170190				84	0	0	70	16	18.6047
WRAP53	0	genome.wustl.edu	37	17	7606722	7606722	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	7606722	7606722	C	-	DEL	WRAP53	ENST00000316024	human	ensembl	74_37	+1	known	frame_shift_del	c.1565	p.A522fs	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WRAP53	HGNC	ENSG00000141499				33	0	0	27	6	18.1818
HEXDC	0	genome.wustl.edu	37	17	80400207	80400208	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	80400207	80400208	-	C	INS	HEXDC	ENST00000337014	human	ensembl	74_37	+1	known	frame_shift_ins	c.1497_1498	p.R501fs	0.000:0.001	NULL	pfam_Glyco_hydro_20_cat-core,superfamily_Glycoside_hydrolase_SF	-	no_errors	HEXDC	HGNC	ENSG00000169660				25	0	0	18	5	21.7391
PFAS	0	genome.wustl.edu	37	17	8167584	8167585	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	17	8167584	8167585	-	C	INS	PFAS	ENST00000314666	human	ensembl	74_37	+1	known	frame_shift_ins	c.1846_1847	p.T619fs	0.919:0.012	superfamily_AIR_synth_C_dom,tigrfam_PRibForGlyAmidine_synth	pfam_AIR_synth_C_dom,pfam_AIR_synth_N_dom,superfamily_PurM_N-like,superfamily_AIR_synth_C_dom,tigrfam_PRibForGlyAmidine_synth	-	no_errors	PFAS	HGNC	ENSG00000178921				32	0	0	41	4	8.88889
CHST9	0	genome.wustl.edu	37	18	24524315	24524316	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	18	24524315	24524316	-	T	INS	CHST9	ENST00000284224	human	ensembl	74_37	-1	known	frame_shift_ins	c.218_217	p.I73fs	0.924:0.877	NULL	pfam_Sulfotransferase	-	no_errors	CHST9	HGNC	ENSG00000154080				41	0	0	34	17	33.3333
CCDC178	0	genome.wustl.edu	37	18	30913143	30913143	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	18	30913143	30913143	T	-	DEL	CCDC178	ENST00000406524	human	ensembl	74_37	-1	known	frame_shift_del	c.874	p.M292fs	0.000	NULL	NULL	-	no_errors	CCDC178	HGNC	ENSG00000166960				31	0	0	37	17	31.4815
FHOD3	0	genome.wustl.edu	37	18	34205516	34205516	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	18	34205516	34205516	C	-	DEL	FHOD3	ENST00000257209	human	ensembl	74_37	+1	known	frame_shift_del	c.1000	p.S336fs	0.999	superfamily_ARM-type_fold	pfam_FH2_Formin,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FHOD3	HGNC	ENSG00000134775				47	0	0	48	11	18.6441
ZBTB7C	0	genome.wustl.edu	37	18	45566518	45566519	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	18	45566518	45566519	-	C	INS	ZBTB7C	ENST00000332053	human	ensembl	74_37	-1	known	frame_shift_ins	c.961_960	p.P320fs	1.000:0.989	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB7C	HGNC	ENSG00000184828				42	0	0	47	13	21.6667
ONECUT2	0	genome.wustl.edu	37	18	55104001	55104001	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	18	55104001	55104001	C	-	DEL	ONECUT2	ENST00000491143	human	ensembl	74_37	+1	known	frame_shift_del	c.1053	p.Q353fs	1.000	pfam_Hmoeo_CUT,superfamily_Lambda_DNA-bd_dom,pfscan_Hmoeo_CUT	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	ONECUT2	HGNC	ENSG00000119547				39	0	0	45	16	26.2295
ATP8B1	0	genome.wustl.edu	37	18	55371796	55371798	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	18	55371796	55371798	AAG	-	DEL	ATP8B1	ENST00000283684	human	ensembl	74_37	-1	known	in_frame_del	c.384_382	p.L128in_frame_del	0.999:1.000:1.000	tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP8B1	HGNC	ENSG00000081923				29	0	0	27	13	32.5
ALPK2	0	genome.wustl.edu	37	18	56246941	56246941	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	18	56246941	56246941	A	-	DEL	ALPK2	ENST00000361673	human	ensembl	74_37	-1	known	frame_shift_del	c.1067	p.L356fs	1.000	NULL	pfam_MHCK_EF2_kinase,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase,pfscan_Ig-like_dom	-	no_errors	ALPK2	HGNC	ENSG00000198796				94	0	0	72	35	32.7103
ALPK2	0	genome.wustl.edu	37	18	56278998	56278998	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	18	56278998	56278998	G	-	DEL	ALPK2	ENST00000361673	human	ensembl	74_37	-1	known	frame_shift_del	c.32	p.P11fs	0.000	pfscan_Ig-like_dom	pfam_MHCK_EF2_kinase,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase,pfscan_Ig-like_dom	-	no_errors	ALPK2	HGNC	ENSG00000198796				106	0	0	82	22	21.1538
LMAN1	0	genome.wustl.edu	37	18	57013194	57013194	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	18	57013194	57013194	T	-	DEL	LMAN1	ENST00000251047	human	ensembl	74_37	-1	known	frame_shift_del	c.912	p.E305fs	0.898	superfamily_HMG_box_dom	pfam_Lectin_leg,superfamily_ConA-like_lec_gl_sf,superfamily_HMG_box_dom	-	no_errors	LMAN1	HGNC	ENSG00000074695				88	0	0	66	16	19.5122
CDH19	0	genome.wustl.edu	37	18	64172527	64172527	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	18	64172527	64172527	A	-	DEL	CDH19	ENST00000262150	human	ensembl	74_37	-1	known	frame_shift_del	c.1841	p.L614fs	0.336	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH19	HGNC	ENSG00000071991				79	0	0	84	21	20
SOGA2	0	genome.wustl.edu	37	18	8784105	8784105	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	18	8784105	8784105	C	-	DEL	SOGA2	ENST00000359865	human	ensembl	74_37	+1	known	frame_shift_del	c.995	p.L334fs	0.000	pfam_SOGA	pfam_SOGA	-	no_errors	SOGA2	HGNC	ENSG00000168502				40	0	0	52	8	13.3333
ZNF791	0	genome.wustl.edu	37	19	12740044	12740044	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	12740044	12740044	A	-	DEL	ZNF791	ENST00000343325	human	ensembl	74_37	+1	known	frame_shift_del	c.1701	p.K569fs	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF791	HGNC	ENSG00000173875				69	0	0	52	18	25.7143
CIB3	0	genome.wustl.edu	37	19	16275653	16275654	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	16275653	16275654	-	C	INS	CIB3	ENST00000269878	human	ensembl	74_37	-1	known	frame_shift_ins	c.418_417	p.L139fs	1.000:1.000	NULL	pfscan_EF_hand_dom	-	no_errors	CIB3	HGNC	ENSG00000141977				76	0	0	61	12	16.4384
CERS1	0	genome.wustl.edu	37	19	18990098	18990100	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	18990098	18990100	GAA	-	DEL	CERS1	ENST00000427170	human	ensembl	74_37	-1	known	in_frame_del	c.852_850	p.F284in_frame_del	1.000:1.000:1.000	pfam_TLC-dom,smart_TLC-dom,pirsf_Longevity_assurance_LAG1_LAC1,pfscan_TLC-dom	pfam_TLC-dom,smart_TLC-dom,pirsf_Longevity_assurance_LAG1_LAC1,pfscan_TLC-dom	-	no_errors	CERS1	HGNC	ENSG00000223802				30	0	0	24	7	22.5806
NCAN	0	genome.wustl.edu	37	19	19338308	19338309	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	19338308	19338309	-	C	INS	NCAN	ENST00000252575	human	ensembl	74_37	+1	known	frame_shift_ins	c.1879_1880	p.D629fs	0.035:0.058	NULL	pfam_Link,pfam_C-type_lectin,pfam_Sushi_SCR_CCP,pfam_Ig_V-set,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Link,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link,prints_AntifreezeII	-	no_errors	NCAN	HGNC	ENSG00000130287				39	0	0	22	5	18.5185
DOT1L	0	genome.wustl.edu	37	19	2191141	2191141	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	2191141	2191141	C	-	DEL	DOT1L	ENST00000398665	human	ensembl	74_37	+1	known	frame_shift_del	c.395	p.E134fs	1.000	pfam_DOT1,pirsf_Histone_H3-K79_MeTrfase_met	pfam_DOT1,pirsf_Histone_H3-K79_MeTrfase_met	-	no_errors	DOT1L	HGNC	ENSG00000104885				61	0	0	50	15	23.0769
CLIP3	0	genome.wustl.edu	37	19	36508304	36508304	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	36508304	36508304	T	-	DEL	CLIP3	ENST00000360535	human	ensembl	74_37	-1	known	frame_shift_del	c.1500	p.V501fs	1.000	superfamily_CAP-Gly_domain	pfam_CAP-Gly_domain,pfam_Ankyrin_rpt,superfamily_CAP-Gly_domain,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_CAP-Gly_domain	-	no_errors	CLIP3	HGNC	ENSG00000105270				55	0	0	39	25	39.0625
ZNF793	0	genome.wustl.edu	37	19	38028415	38028415	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	38028415	38028415	T	-	DEL	ZNF793	ENST00000445217	human	ensembl	74_37	+1	known	frame_shift_del	c.855	p.C288fs	0.222	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF793	HGNC	ENSG00000188227				56	0	0	40	18	31.0345
ZNF540	0	genome.wustl.edu	37	19	38102620	38102620	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	38102620	38102620	A	-	DEL	ZNF540	ENST00000316433	human	ensembl	74_37	+1	known	frame_shift_del	c.439	p.M149fs	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF540	HGNC	ENSG00000171817				127	0	0	122	44	26.506
PSMC4	0	genome.wustl.edu	37	19	40480653	40480654	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	40480653	40480654	-	C	INS	PSMC4	ENST00000157812	human	ensembl	74_37	+1	known	frame_shift_ins	c.591_592	p.R199fs	0.585:0.996	superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-2,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	-	no_errors	PSMC4	HGNC	ENSG00000013275				31	0	0	31	9	22.5
LTBP4	0	genome.wustl.edu	37	19	41132910	41132911	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	41132910	41132911	-	C	INS	LTBP4	ENST00000308370	human	ensembl	74_37	+1	known	frame_shift_ins	c.4214_4215	p.A1408fs	0.959:0.764	superfamily_TB_dom	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	LTBP4	HGNC	ENSG00000090006				29	0	0	5	4	44.4444
CCDC97	0	genome.wustl.edu	37	19	41828552	41828554	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	41828552	41828554	GAG	-	DEL	CCDC97	ENST00000269967	human	ensembl	74_37	+1	known	in_frame_del	c.964_966	p.E324in_frame_del	1.000:1.000:1.000	pfam_DUF2052_coiled-coil	pfam_DUF2052_coiled-coil	-	no_errors	CCDC97	HGNC	ENSG00000142039				80	0	0	87	24	21.6216
FEM1A	0	genome.wustl.edu	37	19	4793748	4793749	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	4793748	4793749	-	G	INS	FEM1A	ENST00000269856	human	ensembl	74_37	+1	known	frame_shift_ins	c.1882_1883	p.T630fs	1.000:1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	FEM1A	HGNC	ENSG00000141965				26	0	0	33	4	10.8108
FAM83E	0	genome.wustl.edu	37	19	49107038	49107038	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	49107038	49107038	G	-	DEL	FAM83E	ENST00000263266	human	ensembl	74_37	-1	known	frame_shift_del	c.889	p.Q297fs	0.001	NULL	pfam_DUF1669,superfamily_Acyl_CoA_acyltransferase	-	no_errors	FAM83E	HGNC	ENSG00000105523				14	0	0	14	8	36.3636
LILRA5	0	genome.wustl.edu	37	19	54822823	54822823	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	54822823	54822823	G	-	DEL	LILRA5	ENST00000301219	human	ensembl	74_37	-1	known	frame_shift_del	c.573	p.S192fs	0.000	smart_Ig_sub	smart_Ig_sub,smart_Ig_sub2	-	no_errors	LILRA5	HGNC	ENSG00000187116				51	0	0	36	14	28
BRSK1	0	genome.wustl.edu	37	19	55815036	55815036	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	55815036	55815036	C	-	DEL	BRSK1	ENST00000590333	human	ensembl	74_37	+1	known	frame_shift_del	c.1176	p.R395fs	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	BRSK1	HGNC	ENSG00000160469				75	0	0	40	17	29.8246
SAFB2	0	genome.wustl.edu	37	19	5587282	5587282	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	5587282	5587282	G	-	DEL	SAFB2	ENST00000252542	human	ensembl	74_37	-1	known	frame_shift_del	c.2834	p.P945fs	0.100	NULL	pfam_RRM_dom,pfam_SAP_dom,smart_SAP_dom,smart_RRM_dom,pfscan_SAP_dom,pfscan_RRM_dom	-	no_errors	SAFB2	HGNC	ENSG00000130254				25	0	0	20	8	28.5714
ZNF324	0	genome.wustl.edu	37	19	58980596	58980596	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	58980596	58980596	G	-	DEL	ZNF324	ENST00000196482	human	ensembl	74_37	+1	known	frame_shift_del	c.44	p.L17fs	1.000	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF324	HGNC	ENSG00000083812				68	0	0	47	16	25.3968
MLLT1	0	genome.wustl.edu	37	19	6222272	6222274	+	In_Frame_Del	DEL	AGG	AGG	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	6222272	6222274	AGG	-	DEL	MLLT1	ENST00000252674	human	ensembl	74_37	-1	known	in_frame_del	c.970_968	p.S323in_frame_del	0.643:0.503:0.456	NULL	pfam_YEATS,pfscan_YEATS	-	no_errors	MLLT1	HGNC	ENSG00000130382				28	0	0	26	5	16.129
ZNF426	0	genome.wustl.edu	37	19	9639888	9639888	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	9639888	9639888	T	-	DEL	ZNF426	ENST00000253115	human	ensembl	74_37	-1	known	frame_shift_del	c.833	p.K278fs	0.002	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_Znf_C2H2_jaz,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF426	HGNC	ENSG00000130818				123	0	0	121	52	30.0578
FBXL12	0	genome.wustl.edu	37	19	9922291	9922291	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	19	9922291	9922291	G	-	DEL	FBXL12	ENST00000247977	human	ensembl	74_37	-1	known	frame_shift_del	c.262	p.Q88fs	0.347	NULL	pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXL12	HGNC	ENSG00000127452				52	0	0	49	12	19.6721
NPHP1	0	genome.wustl.edu	37	2	110882862	110882862	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	110882862	110882862	T	-	DEL	NPHP1	ENST00000417665	human	ensembl	74_37	-1	novel	frame_shift_del	c.1797	p.K599fs	0.000	NULL	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	NPHP1	HGNC	ENSG00000144061				9	0	0	9	5	35.7143
MERTK	0	genome.wustl.edu	37	2	112704982	112704982	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	112704982	112704982	T	-	DEL	MERTK	ENST00000295408	human	ensembl	74_37	+1	known	frame_shift_del	c.595	p.F199fs	1.000	pfscan_Ig-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Rhodanese-like_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MERTK	HGNC	ENSG00000153208				65	0	0	71	26	26.8041
MZT2B	0	genome.wustl.edu	37	2	130948157	130948157	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	130948157	130948157	G	-	DEL	MZT2B	ENST00000281871	human	ensembl	74_37	+1	known	frame_shift_del	c.435	p.G147fs	1.000	NULL	NULL	-	no_errors	MZT2B	HGNC	ENSG00000152082				56	0	0	31	10	24.3902
LCT	0	genome.wustl.edu	37	2	136594278	136594279	+	Frame_Shift_Del	DEL	AT	AT	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	AT	AT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	136594278	136594279	AT	-	DEL	LCT	ENST00000264162	human	ensembl	74_37	-1	known	frame_shift_del	c.462_461	p.Y154fs	0.999:1.000	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	LCT	HGNC	ENSG00000115850				38	0	0	40	13	24.5283
ACVR2A	0	genome.wustl.edu	37	2	148683686	148683686	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	148683686	148683686	A	-	DEL	ACVR2A	ENST00000241416	human	ensembl	74_37	+1	known	frame_shift_del	c.1303	p.K437fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_TGFB_receptor	-	no_errors	ACVR2A	HGNC	ENSG00000121989				129	0	0	58	79	57.6642
UPP2	0	genome.wustl.edu	37	2	158980303	158980303	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	158980303	158980303	A	-	DEL	UPP2	ENST00000409859	human	ensembl	74_37	+1	known	frame_shift_del	c.878	p.K295fs	0.985	pfam_Nucleoside_phosphorylase_d,tigrfam_Uridine_phosphorylase_euk	pfam_Nucleoside_phosphorylase_d,tigrfam_Uridine_phosphorylase_euk	-	no_errors	UPP2	HGNC	ENSG00000007001				65	0	0	43	17	28.3333
ENSG00000238570	0	genome.wustl.edu	37	2	162415090	162415091	+	RNA	INS	-	-	CA			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	162415090	162415091	-	CA	INS	ENSG00000238570	ENST00000458927	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.012:0.010	-	-	-	no_errors	snoU13	RFAM	ENSG00000238570				21	0	0	6	6	50
COBLL1	0	genome.wustl.edu	37	2	165551296	165551296	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	165551296	165551296	A	-	DEL	COBLL1	ENST00000194871	human	ensembl	74_37	-1	known	frame_shift_del	c.2921	p.L974fs	0.972	NULL	pfam_Cordon-bleu_ubiquitin_domain,pfscan_WH2_dom	-	no_errors	COBLL1	HGNC	ENSG00000082438				25	0	0	35	8	18.6047
RBM45	0	genome.wustl.edu	37	2	178988919	178988920	+	Frame_Shift_Ins	INS	-	-	AA			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	178988919	178988920	-	AA	INS	RBM45	ENST00000286070	human	ensembl	74_37	+1	known	frame_shift_ins	c.1134_1135	p.A381fs	1.000:1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM45	HGNC	ENSG00000155636				109	0	0	99	14	12.3894
TTN	0	genome.wustl.edu	37	2	179403334	179403334	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	179403334	179403334	A	-	DEL	TTN	ENST00000342992	human	ensembl	74_37	-1	known	frame_shift_del	c.91518	p.F30506fs	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				120	0	0	40	73	64.6018
TTN	0	genome.wustl.edu	37	2	179535860	179535860	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	179535860	179535860	T	-	DEL	TTN	ENST00000342992	human	ensembl	74_37	-1	known	frame_shift_del	c.31362	p.K10454fs	0.997	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				33	0	0	25	11	30.5556
CALCRL	0	genome.wustl.edu	37	2	188250275	188250275	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	188250275	188250275	A	-	DEL	CALCRL	ENST00000392370	human	ensembl	74_37	-1	known	frame_shift_del	c.48	p.F16fs	0.049	prints_GPCR_2_CGRP1_rcpt	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GCPR_2_calcitonin_rcpt_fam,prints_GPCR_2_CGRP1_rcpt,prints_GPCR_2_secretin-like,prints_GPCR_2_calcitonin_rcpt	-	no_errors	CALCRL	HGNC	ENSG00000064989				26	0	0	12	9	42.8571
C2orf69	0	genome.wustl.edu	37	2	200790166	200790167	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	200790166	200790167	-	A	INS	C2orf69	ENST00000319974	human	ensembl	74_37	+1	known	frame_shift_ins	c.715_716	p.S241fs	1.000:0.965	pfam_UPF0565	pfam_UPF0565	-	no_errors	C2orf69	HGNC	ENSG00000178074				72	0	0	77	30	28.0374
ORC2	0	genome.wustl.edu	37	2	201822217	201822217	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	201822217	201822217	T	-	DEL	ORC2	ENST00000234296	human	ensembl	74_37	-1	known	frame_shift_del	c.145	p.I49fs	0.998	NULL	pfam_ORC2	-	no_errors	ORC2	HGNC	ENSG00000115942				52	0	0	48	15	23.8095
CASP8	0	genome.wustl.edu	37	2	202151290	202151290	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	202151290	202151290	A	-	DEL	CASP8	ENST00000358485	human	ensembl	74_37	+1	known	frame_shift_del	c.1590	p.K532fs	0.061	pfam_Pept_C14_caspase,smart_Pept_C14A_p45_core,pfscan_Pept_C14_p10	pfam_DED,pfam_Pept_C14_caspase,superfamily_DEATH-like_dom,smart_DED,smart_Pept_C14A_p45_core,pfscan_DED,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14A_p45_core	-	no_errors	CASP8	HGNC	ENSG00000064012				52	0	0	64	23	26.4368
BMPR2	0	genome.wustl.edu	37	2	203420130	203420130	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	203420130	203420130	A	-	DEL	BMPR2	ENST00000374580	human	ensembl	74_37	+1	known	frame_shift_del	c.1742	p.N583fs	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	BMPR2	HGNC	ENSG00000204217				71	0	0	94	28	22.9508
INO80D	0	genome.wustl.edu	37	2	206921336	206921337	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	206921336	206921337	TC	-	DEL	INO80D	ENST00000403263	human	ensembl	74_37	-1	known	frame_shift_del	c.550_549	p.E183fs	1.000:1.000	NULL	NULL	-	no_errors	INO80D	HGNC	ENSG00000114933				23	0	0	19	4	17.3913
CRYGA	0	genome.wustl.edu	37	2	209025576	209025577	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	209025576	209025577	-	C	INS	CRYGA	ENST00000304502	human	ensembl	74_37	-1	known	frame_shift_ins	c.477_476	p.A160fs	0.408:0.651	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYGA	HGNC	ENSG00000168582				104	0	0	90	49	35.2518
ERBB4	0	genome.wustl.edu	37	2	212288880	212288881	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	212288880	212288881	-	T	INS	ERBB4	ENST00000342788	human	ensembl	74_37	-1	known	frame_shift_ins	c.2866_2865	p.C955fs	1.000:1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB4	HGNC	ENSG00000178568				109	0	0	78	25	24.2718
ERBB4	0	genome.wustl.edu	37	2	213403254	213403254	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	213403254	213403254	T	-	DEL	ERBB4	ENST00000342788	human	ensembl	74_37	-1	known	frame_shift_del	c.1	p.M1fs	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB4	HGNC	ENSG00000178568				43	0	0	44	15	25.4237
EML4	0	genome.wustl.edu	37	2	42488302	42488302	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	42488302	42488302	A	-	DEL	EML4	ENST00000318522	human	ensembl	74_37	+1	known	frame_shift_del	c.380	p.E130fs	1.000	NULL	pfam_HELP,pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML4	HGNC	ENSG00000143924				73	0	0	58	23	28.3951
RTN4	0	genome.wustl.edu	37	2	55253746	55253746	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	55253746	55253746	T	-	DEL	RTN4	ENST00000337526	human	ensembl	74_37	-1	known	frame_shift_del	c.1489	p.I497fs	1.000	NULL	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN4	HGNC	ENSG00000115310				93	0	0	68	32	32
CCDC104	0	genome.wustl.edu	37	2	55756040	55756042	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	55756040	55756042	AGA	-	DEL	CCDC104	ENST00000339012	human	ensembl	74_37	+1	known	in_frame_del	c.384_386	p.E129in_frame_del	0.998:1.000:1.000	pfam_ARF-like_2-bdp_dom	pfam_ARF-like_2-bdp_dom	-	no_errors	CCDC104	HGNC	ENSG00000163001				53	0	0	54	11	16.9231
MCEE	0	genome.wustl.edu	37	2	71337211	71337212	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	71337211	71337212	-	T	INS	MCEE	ENST00000244217	human	ensembl	74_37	-1	known	frame_shift_ins	c.420_419	p.K141fs	1.000:1.000	pfam_Glyas_Fos-R_dOase_dom,tigrfam_MeMalonyl-CoA_epimerase	pfam_Glyas_Fos-R_dOase_dom,tigrfam_MeMalonyl-CoA_epimerase	-	no_errors	MCEE	HGNC	ENSG00000124370				30	0	0	41	8	16.3265
ANKRD20A8P	0	genome.wustl.edu	37	2	95483039	95483039	+	RNA	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	95483039	95483039	T	-	DEL	ANKRD20A8P	ENST00000432432	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.232	-	-	-	no_errors	ANKRD20A8P	HGNC	ENSG00000229089				56	0	0	78	6	7.14286
ANKRD36C	0	genome.wustl.edu	37	2	96557435	96557436	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	96557435	96557436	-	T	INS	ANKRD36C	ENST00000456556	human	ensembl	74_37	-1	known	frame_shift_ins	c.2835_2834	p.H946fs	0.002:0.003	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD36C	HGNC	ENSG00000174501				9	0	0	12	5	29.4118
LYG1	0	genome.wustl.edu	37	2	99900949	99900950	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	2	99900949	99900950	-	C	INS	LYG1	ENST00000308528	human	ensembl	74_37	-1	known	frame_shift_ins	c.492_491	p.A165fs	0.003:0.025	superfamily_Lysozyme-like_dom,pirsf_Glyco_hydro_23,prints_Glyco_hydro_23	superfamily_Lysozyme-like_dom,pirsf_Glyco_hydro_23,prints_Glyco_hydro_23	-	no_errors	LYG1	HGNC	ENSG00000144214				56	0	0	54	4	6.89655
ISM1	0	genome.wustl.edu	37	20	13260483	13260483	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	20	13260483	13260483	G	-	DEL	ISM1	ENST00000262487	human	ensembl	74_37	+1	known	frame_shift_del	c.581	p.W196fs	0.979	NULL	pfam_AMOP,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_AMOP,pfscan_AMOP,pfscan_Thrombospondin_1_rpt	-	no_errors	ISM1	HGNC	ENSG00000101230				54	0	0	34	7	17.0732
OTOR	0	genome.wustl.edu	37	20	16729576	16729577	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	20	16729576	16729577	-	A	INS	OTOR	ENST00000246081	human	ensembl	74_37	+1	known	frame_shift_ins	c.180_181	p.G62fs	0.799:0.997	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain	-	no_errors	OTOR	HGNC	ENSG00000125879				70	0	0	53	12	18.4615
C20orf194	0	genome.wustl.edu	37	20	3321162	3321163	+	Frame_Shift_Ins	INS	-	-	AA			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	20	3321162	3321163	-	AA	INS	C20orf194	ENST00000252032	human	ensembl	74_37	-1	known	frame_shift_ins	c.970_969	p.A323fs	1.000:0.997	NULL	NULL	-	no_errors	C20orf194	HGNC	ENSG00000088854				62	0	0	58	8	12.1212
RALGAPB	0	genome.wustl.edu	37	20	37146233	37146233	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	20	37146233	37146233	C	-	DEL	RALGAPB	ENST00000262879	human	ensembl	74_37	+1	known	frame_shift_del	c.1136	p.P381fs	1.000	NULL	superfamily_ARM-type_fold,pfscan_Rap_GAP_dom	-	no_errors	RALGAPB	HGNC	ENSG00000170471				103	0	0	92	21	18.5841
RBCK1	0	genome.wustl.edu	37	20	409650	409652	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	20	409650	409652	AGA	-	DEL	RBCK1	ENST00000356286	human	ensembl	74_37	+1	known	in_frame_del	c.1364_1366	p.K457in_frame_del	1.000:1.000:1.000	pfam_Znf_C6HC	pfam_Znf_C6HC,pfam_Znf_RanBP2,smart_Znf_RanBP2,smart_Znf_RING,pfscan_Znf_RanBP2,pfscan_Znf_RING,pfscan_Ubiquitin_supergroup	-	no_errors	RBCK1	HGNC	ENSG00000125826				26	0	0	18	6	25
SLC23A2	0	genome.wustl.edu	37	20	4843454	4843454	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	20	4843454	4843454	C	-	DEL	SLC23A2	ENST00000338244	human	ensembl	74_37	-1	known	frame_shift_del	c.1456	p.V486fs	1.000	pfam_Xant/urac/vitC	pfam_Xant/urac/vitC	-	no_errors	SLC23A2	HGNC	ENSG00000089057				86	0	0	68	31	31.3131
TSHZ2	0	genome.wustl.edu	37	20	51870992	51870992	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	20	51870992	51870992	C	-	DEL	TSHZ2	ENST00000371497	human	ensembl	74_37	+1	known	frame_shift_del	c.995	p.D334fs	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ2	HGNC	ENSG00000182463				129	0	0	123	9	6.81818
NTSR1	0	genome.wustl.edu	37	20	61341143	61341143	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	20	61341143	61341143	C	-	DEL	NTSR1	ENST00000370501	human	ensembl	74_37	+1	known	frame_shift_del	c.584	p.S196fs	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_NT1_rcpt,prints_GPCR_Rhodpsn,prints_NT_rcpt	-	no_errors	NTSR1	HGNC	ENSG00000101188				46	0	0	52	7	11.8644
MRAP	0	genome.wustl.edu	37	21	33684272	33684272	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	21	33684272	33684272	C	-	DEL	MRAP	ENST00000303645	human	ensembl	74_37	+1	known	frame_shift_del	c.484	p.P163fs	0.000	NULL	NULL	-	no_errors	MRAP	HGNC	ENSG00000170262				53	0	0	56	8	12.5
RCAN1	0	genome.wustl.edu	37	21	35890428	35890429	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	21	35890428	35890429	-	T	INS	RCAN1	ENST00000313806	human	ensembl	74_37	-1	known	frame_shift_ins	c.713_712	p.I238fs	1.000:1.000	pfam_Calcipressin	pfam_Calcipressin	-	no_errors	RCAN1	HGNC	ENSG00000159200				116	0	0	103	29	21.9697
TTC3	0	genome.wustl.edu	37	21	38555143	38555144	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	21	38555143	38555144	AA	-	DEL	TTC3	ENST00000354749	human	ensembl	74_37	+1	known	frame_shift_del	c.4685_4686	p.K1564fs	1.000:1.000	NULL	pfam_Znf_C3HC4_RING-type,superfamily_DEATH-like_dom,smart_TPR_repeat,smart_Znf_RING,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	TTC3	HGNC	ENSG00000182670				35	0	0	26	9	25.7143
RIPK4	0	genome.wustl.edu	37	21	43165934	43165935	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	21	43165934	43165935	-	G	INS	RIPK4	ENST00000352483	human	ensembl	74_37	-1	known	frame_shift_ins	c.1065_1064	p.E356fs	0.000:0.000	NULL	pfam_Ankyrin_rpt,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_dom,prints_Ankyrin_rpt,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RIPK4	HGNC	ENSG00000183421				78	0	0	76	28	26.9231
PTTG1IP	0	genome.wustl.edu	37	21	46276194	46276196	+	In_Frame_Del	DEL	GCA	GCA	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	GCA	GCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	21	46276194	46276196	GCA	-	DEL	PTTG1IP	ENST00000330938	human	ensembl	74_37	-1	known	in_frame_del	c.363_361	p.C121in_frame_del	1.000:1.000:1.000	NULL	smart_Plexin-like_fold	-	no_errors	PTTG1IP	HGNC	ENSG00000183255				37	0	0	33	5	13.1579
SERPIND1	0	genome.wustl.edu	37	22	21134077	21134078	+	Frame_Shift_Ins	INS	-	-	CCTGC			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	22	21134077	21134078	-	CCTGC	INS	SERPIND1	ENST00000215727	human	ensembl	74_37	+1	known	frame_shift_ins	c.477_478	p.T159fs	0.763:0.833	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPIND1	HGNC	ENSG00000099937				79	0	0	87	22	20.1835
SERPIND1	0	genome.wustl.edu	37	22	21134081	21134082	+	Frame_Shift_Ins	INS	-	-	CGCTG			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	22	21134081	21134082	-	CGCTG	INS	SERPIND1	ENST00000215727	human	ensembl	74_37	+1	known	frame_shift_ins	c.481_482	p.M162fs	1.000:1.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPIND1	HGNC	ENSG00000099937				81	0	0	99	14	12.3894
CARD10	0	genome.wustl.edu	37	22	37893150	37893150	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	22	37893150	37893150	G	-	DEL	CARD10	ENST00000251973	human	ensembl	74_37	-1	known	frame_shift_del	c.1823	p.P608fs	0.951	NULL	pfam_CARD,superfamily_DEATH-like_dom,pfscan_CARD	-	no_errors	CARD10	HGNC	ENSG00000100065				59	0	0	50	8	13.7931
PDGFB	0	genome.wustl.edu	37	22	39621797	39621797	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	22	39621797	39621797	G	-	DEL	PDGFB	ENST00000331163	human	ensembl	74_37	-1	known	frame_shift_del	c.657	p.K220fs	0.996	NULL	pfam_PDGF/VEGF_dom,pfam_PDGF_N,smart_PDGF/VEGF_dom,pfscan_PDGF/VEGF_dom	-	no_errors	PDGFB	HGNC	ENSG00000100311				38	0	0	29	12	29.2683
ARFGAP3	0	genome.wustl.edu	37	22	43213780	43213780	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	22	43213780	43213780	T	-	DEL	ARFGAP3	ENST00000263245	human	ensembl	74_37	-1	known	frame_shift_del	c.896	p.N299fs	0.002	NULL	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ARFGAP3	HGNC	ENSG00000242247				148	0	0	135	30	18.1818
CELSR1	0	genome.wustl.edu	37	22	46931227	46931227	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	22	46931227	46931227	C	-	DEL	CELSR1	ENST00000262738	human	ensembl	74_37	-1	known	frame_shift_del	c.1841	p.G614fs	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR1	HGNC	ENSG00000075275				38	0	0	18	5	21.7391
ZBED4	0	genome.wustl.edu	37	22	50277678	50277679	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	22	50277678	50277679	-	T	INS	ZBED4	ENST00000216268	human	ensembl	74_37	+1	known	frame_shift_ins	c.368_369	p.I126fs	1.000:0.944	pfam_Znf_BED_prd,smart_Znf_BED_prd,pfscan_Znf_BED_prd	pfam_Znf_BED_prd,pfam_HATC_dom_C,superfamily_RNaseH-like_dom,smart_Znf_BED_prd,pfscan_Znf_BED_prd	-	no_errors	ZBED4	HGNC	ENSG00000100426				79	0	0	87	17	16.3462
MOV10L1	0	genome.wustl.edu	37	22	50559005	50559005	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	22	50559005	50559005	A	-	DEL	MOV10L1	ENST00000262794	human	ensembl	74_37	+1	known	frame_shift_del	c.1529	p.I512fs	0.052	NULL	superfamily_P-loop_NTPase,superfamily_NA-bd_OB-fold	-	no_errors	MOV10L1	HGNC	ENSG00000073146				119	0	0	84	30	26.3158
KIAA2018	0	genome.wustl.edu	37	3	113380090	113380090	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	113380090	113380090	T	-	DEL	KIAA2018	ENST00000316407	human	ensembl	74_37	-1	known	frame_shift_del	c.439	p.I147fs	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	KIAA2018	HGNC	ENSG00000176542				78	0	0	77	20	20.6186
GOLGB1	0	genome.wustl.edu	37	3	121417284	121417284	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	121417284	121417284	T	-	DEL	GOLGB1	ENST00000340645	human	ensembl	74_37	-1	known	frame_shift_del	c.2071	p.S691fs	0.943	NULL	superfamily_Prefoldin,superfamily_STAT_TF_coiled-coil,smart_Leu_zip_homeo	-	no_errors	GOLGB1	HGNC	ENSG00000173230				69	0	0	72	5	6.49351
PLXNA1	0	genome.wustl.edu	37	3	126735391	126735391	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	126735391	126735391	C	-	DEL	PLXNA1	ENST00000393409	human	ensembl	74_37	+1	known	frame_shift_del	c.3046	p.Q1019fs	0.981	pfam_IPT,superfamily_Ig_E-set,smart_IPT	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA1	HGNC	ENSG00000114554				50	0	0	37	15	28.8462
TOPBP1	0	genome.wustl.edu	37	3	133329880	133329880	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	133329880	133329880	T	-	DEL	TOPBP1	ENST00000260810	human	ensembl	74_37	-1	known	frame_shift_del	c.4141	p.I1381fs	0.605	NULL	pfam_BRCT_dom,superfamily_BRCT_dom,superfamily_Secretoglobin,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TOPBP1	HGNC	ENSG00000163781				105	0	0	103	27	20.7692
C3orf20	0	genome.wustl.edu	37	3	14802988	14802989	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	14802988	14802989	-	G	INS	C3orf20	ENST00000253697	human	ensembl	74_37	+1	known	frame_shift_ins	c.2361_2362	p.K789fs	0.991:0.991	NULL	NULL	-	no_errors	C3orf20	HGNC	ENSG00000131379				62	0	0	56	18	24.3243
MED12L	0	genome.wustl.edu	37	3	150845633	150845633	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	150845633	150845633	G	-	DEL	MED12L	ENST00000474524	human	ensembl	74_37	+1	known	frame_shift_del	c.418	p.E140fs	1.000	pfam_Mediator_Med12	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12,pfam_Mediator_Med12_catenin-bd	-	no_errors	MED12L	HGNC	ENSG00000144893				47	0	0	51	18	26.087
SERPINI1	0	genome.wustl.edu	37	3	167507159	167507159	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	167507159	167507159	A	-	DEL	SERPINI1	ENST00000295777	human	ensembl	74_37	+1	known	frame_shift_del	c.243	p.N83fs	1.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINI1	HGNC	ENSG00000163536				118	0	0	124	28	18.4211
GPR160	0	genome.wustl.edu	37	3	169802469	169802469	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	169802469	169802469	A	-	DEL	GPR160	ENST00000355897	human	ensembl	74_37	+1	known	frame_shift_del	c.709	p.I239fs	0.030	pfscan_GPCR_Rhodpsn_7TM	pfscan_GPCR_Rhodpsn_7TM	-	no_errors	GPR160	HGNC	ENSG00000173890				48	0	0	36	21	36.8421
FXR1	0	genome.wustl.edu	37	3	180666228	180666228	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	180666228	180666228	A	-	DEL	FXR1	ENST00000357559	human	ensembl	74_37	+1	known	frame_shift_del	c.364	p.N124fs	1.000	NULL	pfam_Frag_X_MRP_fam,pfam_KH_dom_type_1,pfam_Agenet-like_dom,superfamily_NA-bd_OB-fold,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FXR1	HGNC	ENSG00000114416				50	0	0	51	16	23.8806
CPN2	0	genome.wustl.edu	37	3	194062616	194062617	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	194062616	194062617	-	A	INS	CPN2	ENST00000323830	human	ensembl	74_37	-1	known	frame_shift_ins	c.816_815	p.L272fs	0.991:0.991	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	CPN2	HGNC	ENSG00000178772				51	0	0	43	8	15.6863
LINC00691	0	genome.wustl.edu	37	3	24138195	24138196	+	RNA	INS	-	-	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	24138195	24138196	-	T	INS	LINC00691	ENST00000436123	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.509:0.516	-	-	-	no_errors	LINC00691	HGNC	ENSG00000224074				8	0	0	5	3	37.5
TOP2B	0	genome.wustl.edu	37	3	25670433	25670433	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	25670433	25670433	T	-	DEL	TOP2B	ENST00000264331	human	ensembl	74_37	-1	known	frame_shift_del	c.1811	p.N604fs	1.000	superfamily_Topo_IIA_like_dom,smart_Topo_IIA	pfam_Topo_IIA_A/C,pfam_Topo_IIA_bsu_dom2,pfam_DTHCT,pfam_HATPase_ATP-bd,superfamily_Topo_IIA_like_dom,superfamily_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,smart_Topo_IIA,smart_Topo_IIA_A/C,prints_TopoII_euk,prints_Topo_IIA,prints_Transcrpt_fac_NFYB/HAP3	-	no_errors	TOP2B	HGNC	ENSG00000077097				29	0	0	13	13	50
SCN11A	0	genome.wustl.edu	37	3	38949440	38949441	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	38949440	38949441	-	T	INS	SCN11A	ENST00000302328	human	ensembl	74_37	-1	known	frame_shift_ins	c.1473_1472	p.P492fs	0.422:0.352	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN11A	HGNC	ENSG00000168356				73	0	0	55	13	19.1176
SCN11A	0	genome.wustl.edu	37	3	38962726	38962726	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	38962726	38962726	C	-	DEL	SCN11A	ENST00000302328	human	ensembl	74_37	-1	known	frame_shift_del	c.733	p.A245fs	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN11A	HGNC	ENSG00000168356				140	0	0	135	27	16.6667
ULK4	0	genome.wustl.edu	37	3	41860985	41860985	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	41860985	41860985	T	-	DEL	ULK4	ENST00000301831	human	ensembl	74_37	-1	known	frame_shift_del	c.1778	p.K593fs	1.000	superfamily_ARM-type_fold	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ULK4	HGNC	ENSG00000168038				59	0	0	82	14	14.5833
KIF15	0	genome.wustl.edu	37	3	44879832	44879832	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	44879832	44879832	A	-	DEL	KIF15	ENST00000326047	human	ensembl	74_37	+1	known	frame_shift_del	c.3237	p.K1081fs	0.023	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF15	HGNC	ENSG00000163808				40	0	0	38	11	22.449
KIF9	0	genome.wustl.edu	37	3	47315092	47315092	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	47315092	47315092	C	-	DEL	KIF9	ENST00000265529	human	ensembl	74_37	-1	known	frame_shift_del	c.316	p.A106fs	0.868	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF9	HGNC	ENSG00000088727				42	0	0	53	11	17.1875
DOCK3	0	genome.wustl.edu	37	3	51417604	51417604	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	51417604	51417604	C	-	DEL	DOCK3	ENST00000266037	human	ensembl	74_37	+1	known	frame_shift_del	c.5549	p.P1852fs	0.115	NULL	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538				40	0	0	26	12	31.5789
GRM2	0	genome.wustl.edu	37	3	51746928	51746928	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	51746928	51746928	G	-	DEL	GRM2	ENST00000395052	human	ensembl	74_37	+1	known	frame_shift_del	c.890	p.A299fs	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_2,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GRM2	HGNC	ENSG00000164082				38	0	0	36	18	33.3333
GLT8D1	0	genome.wustl.edu	37	3	52731828	52731828	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	52731828	52731828	C	-	DEL	GLT8D1	ENST00000266014	human	ensembl	74_37	-1	known	frame_shift_del	c.238	p.A80fs	1.000	pfam_Glyco_trans_8	pfam_Glyco_trans_8	-	no_errors	GLT8D1	HGNC	ENSG00000016864				90	0	0	101	11	9.82143
ITIH3	0	genome.wustl.edu	37	3	52829637	52829637	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	52829637	52829637	G	-	DEL	ITIH3	ENST00000449956	human	ensembl	74_37	+1	known	frame_shift_del	c.112	p.V39fs	0.993	smart_VIT	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH3	HGNC	ENSG00000162267				13	0	0	22	3	12
IL17RB	0	genome.wustl.edu	37	3	53889347	53889347	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	53889347	53889347	A	-	DEL	IL17RB	ENST00000288167	human	ensembl	74_37	+1	known	frame_shift_del	c.508	p.K172fs	0.036	NULL	pfam_SEFIR	-	no_errors	IL17RB	HGNC	ENSG00000056736				22	0	0	38	10	20.8333
ATXN7	0	genome.wustl.edu	37	3	63981832	63981832	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	63981832	63981832	C	-	DEL	ATXN7	ENST00000398590	human	ensembl	74_37	+1	known	frame_shift_del	c.2334	p.T781fs	0.705	NULL	pfam_SCA7_dom	-	no_errors	ATXN7	HGNC	ENSG00000163635				48	0	0	49	15	23.4375
SLC25A26	0	genome.wustl.edu	37	3	66293635	66293635	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	66293635	66293635	T	-	DEL	SLC25A26	ENST00000354883	human	ensembl	74_37	+1	known	frame_shift_del	c.199	p.F68fs	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A26	HGNC	ENSG00000144741				85	0	0	50	22	30.5556
ROBO2	0	genome.wustl.edu	37	3	77657038	77657038	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	77657038	77657038	C	-	DEL	ROBO2	ENST00000461745	human	ensembl	74_37	+1	known	frame_shift_del	c.3226	p.P1078fs	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO2	HGNC	ENSG00000185008				34	0	0	44	6	12
GBE1	0	genome.wustl.edu	37	3	81548302	81548302	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	81548302	81548302	A	-	DEL	GBE1	ENST00000429644	human	ensembl	74_37	-1	known	frame_shift_del	c.2011	p.S671fs	0.985	pfam_A-amylase_b_C	pfam_A-amylase_b_C,pfam_Glyco_hydro_13_cat_dom,pfam_Glyco_hydro_13_N,superfamily_Glycoside_hydrolase_SF,superfamily_Ig_E-set,smart_Glyco_hydro_13_sub_cat_dom	-	no_errors	GBE1	HGNC	ENSG00000114480				30	0	0	30	10	25
VGLL3	0	genome.wustl.edu	37	3	87027857	87027859	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	87027857	87027859	CTC	-	DEL	VGLL3	ENST00000398399	human	ensembl	74_37	-1	known	in_frame_del	c.222_220	p.E74in_frame_del	1.000:1.000:1.000	NULL	pfam_Vg_Tdu,smart_TDU_repeat	-	no_errors	VGLL3	HGNC	ENSG00000206538				43	0	0	47	10	17.5439
FILIP1L	0	genome.wustl.edu	37	3	99568990	99568990	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	3	99568990	99568990	T	-	DEL	FILIP1L	ENST00000354552	human	ensembl	74_37	-1	known	frame_shift_del	c.1530	p.K510fs	1.000	NULL	pfam_Cortactin-binding_p2_N,superfamily_Prefoldin,prints_Tropomyosin	-	no_errors	FILIP1L	HGNC	ENSG00000168386				39	0	0	36	12	25
CXXC4	0	genome.wustl.edu	37	4	105411999	105412000	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	4	105411999	105412000	CA	-	DEL	CXXC4	ENST00000394767	human	ensembl	74_37	-1	known	frame_shift_del	c.961_960	p.C320fs	1.000:1.000	pfam_Znf_CXXC,pfscan_Znf_CXXC	pfam_Znf_CXXC,pfscan_Znf_CXXC	-	no_errors	CXXC4	HGNC	ENSG00000168772				111	0	0	119	27	18.4932
TBCK	0	genome.wustl.edu	37	4	107156505	107156505	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	4	107156505	107156505	T	-	DEL	TBCK	ENST00000273980	human	ensembl	74_37	-1	known	frame_shift_del	c.1370	p.N457fs	1.000	superfamily_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Rhodanese-like_dom,superfamily_Kinase-like_dom,superfamily_Rab-GTPase-TBC_dom,superfamily_Rhodanese-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Rab-GTPase-TBC_dom,smart_Rhodanese-like_dom,pfscan_Rab-GTPase-TBC_dom,pfscan_Prot_kinase_dom,pfscan_Rhodanese-like_dom	-	no_errors	TBCK	HGNC	ENSG00000145348				29	0	0	23	8	25.8065
IL21	0	genome.wustl.edu	37	4	123534050	123534051	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	4	123534050	123534051	-	T	INS	IL21	ENST00000264497	human	ensembl	74_37	-1	known	frame_shift_ins	c.394_393	p.P131fs	0.982:0.985	pfam_IL-15/IL-21_fam	pfam_IL-15/IL-21_fam	-	no_errors	IL21	HGNC	ENSG00000138684				35	0	0	46	18	28.125
SLC34A2	0	genome.wustl.edu	37	4	25665878	25665878	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	4	25665878	25665878	T	-	DEL	SLC34A2	ENST00000382051	human	ensembl	74_37	+1	known	frame_shift_del	c.305	p.L103fs	0.194	NULL	pfam_Na/Pi_transpt,superfamily_ABC1_TM_dom,tigrfam_Na/Pi_transpt	-	no_errors	SLC34A2	HGNC	ENSG00000157765				91	0	0	94	39	29.3233
HGFAC	0	genome.wustl.edu	37	4	3450973	3450973	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	4	3450973	3450973	G	-	DEL	HGFAC	ENST00000382774	human	ensembl	74_37	+1	known	frame_shift_del	c.1795	p.L602fs	0.999	pirsf_Coagulation_fac_XIIa/HGFA,pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	pirsf_Coagulation_fac_XIIa/HGFA,pfam_Peptidase_S1,pfam_Kringle,pfam_FN_type2_col-bd,pfam_Fibronectin_type1,pfam_EG-like_dom,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_FN_type2_col-bd,smart_EG-like_dom,smart_Fibronectin_type1,smart_Kringle,smart_Peptidase_S1,pfscan_EG-like_dom,pfscan_Fibronectin_type1,pfscan_FN_type2_col-bd,pfscan_Kringle,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	HGFAC	HGNC	ENSG00000109758				64	0	0	55	19	25.6757
KCTD8	0	genome.wustl.edu	37	4	44177044	44177044	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	4	44177044	44177044	T	-	DEL	KCTD8	ENST00000360029	human	ensembl	74_37	-1	known	frame_shift_del	c.1185	p.A396fs	1.000	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD8	HGNC	ENSG00000183783				128	0	0	136	33	19.5266
SDAD1	0	genome.wustl.edu	37	4	76892547	76892547	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	4	76892547	76892547	T	-	DEL	SDAD1	ENST00000356260	human	ensembl	74_37	-1	known	frame_shift_del	c.776	p.N259fs	1.000	superfamily_ARM-type_fold	pfam_SDA1_dom,pfam_Uncharacterised_NUC130/133_N,superfamily_ARM-type_fold	-	no_errors	SDAD1	HGNC	ENSG00000198301				149	0	0	92	33	26.4
FRAS1	0	genome.wustl.edu	37	4	79362354	79362354	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	4	79362354	79362354	T	-	DEL	FRAS1	ENST00000264895	human	ensembl	74_37	+1	known	frame_shift_del	c.5568	p.F1858fs	1.000	NULL	pfam_Calx_beta,pfam_VWF_C,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_VWC_out,smart_VWF_C,smart_Furin_repeat,smart_EG-like_dom,smart_Calx_beta,pfscan_VWF_C	-	no_errors	FRAS1	HGNC	ENSG00000138759				34	0	0	49	11	18.3333
TSSK1B	0	genome.wustl.edu	37	5	112769462	112769462	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	112769462	112769462	G	-	DEL	TSSK1B	ENST00000390666	human	ensembl	74_37	-1	known	frame_shift_del	c.1075	p.Q359fs	0.005	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TSSK1B	HGNC	ENSG00000212122				15	0	0	19	5	20.8333
KCNN2	0	genome.wustl.edu	37	5	113822813	113822813	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	113822813	113822813	A	-	DEL	KCNN2	ENST00000264773	human	ensembl	74_37	+1	known	frame_shift_del	c.1321	p.K442fs	1.000	pfam_CaM-bd_dom,superfamily_CaM-bd_dom	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_2pore_dom_K_chnl_dom,superfamily_CaM-bd_dom,prints_K_chnl_Ca-activ_SK	-	no_errors	KCNN2	HGNC	ENSG00000080709				75	0	0	75	25	25
PHAX	0	genome.wustl.edu	37	5	125939712	125939712	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	125939712	125939712	A	-	DEL	PHAX	ENST00000297540	human	ensembl	74_37	+1	known	frame_shift_del	c.547	p.M185fs	1.000	NULL	pfam_PHAX_RNA-binding_domain	-	no_errors	PHAX	HGNC	ENSG00000164902				66	0	0	60	31	34.0659
SEPT8	0	genome.wustl.edu	37	5	132096640	132096642	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	132096640	132096642	CTC	-	DEL	SEPT8	ENST00000378719	human	ensembl	74_37	-1	known	in_frame_del	c.1140_1138	p.E380in_frame_del	1.000:1.000:1.000	pirsf_Septin	pfam_Cell_div_GTP-bd,superfamily_P-loop_NTPase,pirsf_Septin	-	no_errors	SEPT8	HGNC	ENSG00000164402				112	0	0	105	26	19.8473
ANKHD1	0	genome.wustl.edu	37	5	139892956	139892957	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	139892956	139892957	-	A	INS	ANKHD1	ENST00000297183	human	ensembl	74_37	+1	known	frame_shift_ins	c.4209_4210	p.C1405fs	1.000:1.000	NULL	pfam_Ankyrin_rpt,pfam_KH_dom_type_1,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_KH_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_KH_dom_type_1,prints_Ankyrin_rpt	-	no_errors	ANKHD1	HGNC	ENSG00000131503				51	0	0	45	19	29.6875
LARS	0	genome.wustl.edu	37	5	145508683	145508683	+	Splice_Site	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	145508683	145508683	T	-	DEL	LARS	ENST00000394434	human	ensembl	74_37	-1	known	splice_site_del	c.2629-2	e26-2	1.000	-	-	-	no_errors	LARS	HGNC	ENSG00000133706				76	0	0	96	15	13.5135
FAM193B	0	genome.wustl.edu	37	5	176966140	176966140	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	176966140	176966140	G	-	DEL	FAM193B	ENST00000514747	human	ensembl	74_37	-1	novel	frame_shift_del	c.219	p.A74fs	0.001	NULL	NULL	-	no_errors	FAM193B	HGNC	ENSG00000146067				8	0	0	4	5	55.5556
CNOT6	0	genome.wustl.edu	37	5	179994114	179994114	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	179994114	179994114	T	-	DEL	CNOT6	ENST00000261951	human	ensembl	74_37	+1	known	frame_shift_del	c.744	p.L251fs	1.000	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	pfam_Endo/exonuclease/phosphatase,pfam_Leu-rich_rpt,superfamily_Endo/exonuclease/phosphatase,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	CNOT6	HGNC	ENSG00000113300				58	0	0	89	24	21.2389
CDH10	0	genome.wustl.edu	37	5	24491905	24491906	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	24491905	24491906	-	T	INS	CDH10	ENST00000264463	human	ensembl	74_37	-1	known	frame_shift_ins	c.1656_1655	p.N552fs	1.000:1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH10	HGNC	ENSG00000040731				25	0	0	25	6	19.3548
CDH6	0	genome.wustl.edu	37	5	31294199	31294199	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	31294199	31294199	A	-	DEL	CDH6	ENST00000265071	human	ensembl	74_37	+1	known	frame_shift_del	c.359	p.K121fs	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH6	HGNC	ENSG00000113361				112	0	0	115	41	26.2821
ZFR	0	genome.wustl.edu	37	5	32404160	32404161	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	32404160	32404161	-	T	INS	ZFR	ENST00000265069	human	ensembl	74_37	-1	known	frame_shift_ins	c.1075_1074	p.E358fs	1.000:1.000	smart_Znf_U1	pfam_DZF,pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like,smart_DZF	-	no_errors	ZFR	HGNC	ENSG00000056097				105	0	0	101	27	21.0938
SPEF2	0	genome.wustl.edu	37	5	35705894	35705894	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	35705894	35705894	A	-	DEL	SPEF2	ENST00000356031	human	ensembl	74_37	+1	known	frame_shift_del	c.2649	p.K886fs	0.129	NULL	pfam_DUF1042,pfam_Adenylate_kin,pfam_HATC_dom_C,superfamily_P-loop_NTPase,superfamily_CH-domain,pfscan_CH-domain	-	no_errors	SPEF2	HGNC	ENSG00000152582				28	0	0	23	11	32.3529
FYB	0	genome.wustl.edu	37	5	39124356	39124357	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	39124356	39124357	-	A	INS	FYB	ENST00000540520	human	ensembl	74_37	-1	known	frame_shift_ins	c.2100_2099	p.L700fs	0.995:0.975	NULL	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain	-	no_errors	FYB	HGNC	ENSG00000082074				31	0	0	27	7	20.5882
C6	0	genome.wustl.edu	37	5	41181535	41181535	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	41181535	41181535	A	-	DEL	C6	ENST00000263413	human	ensembl	74_37	-1	known	frame_shift_del	c.853	p.Y285fs	0.015	NULL	pfam_MACPF,pfam_Sushi_SCR_CCP,pfam_Thrombospondin_1_rpt,pfam_LDrepeatLR_classA_rpt,pfam_Kazal_dom,superfamily_Sushi_SCR_CCP,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,smart_Sushi_SCR_CCP,smart_FacI_MAC,prints_MAC_perforin,pfscan_LDrepeatLR_classA_rpt,pfscan_Sushi_SCR_CCP,pfscan_Thrombospondin_1_rpt	-	no_errors	C6	HGNC	ENSG00000039537				64	0	0	64	28	30.4348
TNPO1	0	genome.wustl.edu	37	5	72173171	72173174	+	Splice_Site	DEL	TAAG	TAAG	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	TAAG	TAAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	72173171	72173174	TAAG	-	DEL	TNPO1	ENST00000337273	human	ensembl	74_37	+1	known	splice_site_del	c.920+4_920+1	e10-1	0.973:0.997:1.000:1.000	-	-	-	no_errors	TNPO1	HGNC	ENSG00000083312				55	0	0	79	16	16.8421
CMYA5	0	genome.wustl.edu	37	5	79030050	79030050	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	79030050	79030050	A	-	DEL	CMYA5	ENST00000446378	human	ensembl	74_37	+1	known	frame_shift_del	c.5462	p.K1823fs	0.031	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309				74	0	0	76	28	26.9231
MSH3	0	genome.wustl.edu	37	5	79970915	79970916	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	79970915	79970916	AA	-	DEL	MSH3	ENST00000265081	human	ensembl	74_37	+1	known	frame_shift_del	c.1141_1142	p.K383fs	0.982:0.892	pfam_DNA_mmatch_repair_MutS_con_dom,superfamily_DNA_mmatch_repair_MutS_con_dom	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mmatch_repair_MutS_con_dom,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_P-loop_NTPase,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mmatch_repair_MutS_con_dom,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C	-	no_errors	MSH3	HGNC	ENSG00000113318				163	0	0	114	36	24
RASA1	0	genome.wustl.edu	37	5	86669978	86669978	+	Splice_Site	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	86669978	86669978	A	-	DEL	RASA1	ENST00000274376	human	ensembl	74_37	+1	known	splice_site_del	c.1777-2	e14-2	1.000	-	-	-	no_errors	RASA1	HGNC	ENSG00000145715				9	0	0	6	3	33.3333
RASA1	0	genome.wustl.edu	37	5	86675571	86675571	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	86675571	86675571	A	-	DEL	RASA1	ENST00000274376	human	ensembl	74_37	+1	known	frame_shift_del	c.2507	p.N838fs	1.000	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,smart_RasGAP,pfscan_RasGAP	pfam_SH2,pfam_RasGAP,pfam_Pleckstrin_homology,pfam_SH3_domain,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_SH2,smart_SH3_domain,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_RasGAP,prints_SH2	-	no_errors	RASA1	HGNC	ENSG00000145715				50	0	0	51	18	26.087
CETN3	0	genome.wustl.edu	37	5	89701581	89701581	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	5	89701581	89701581	T	-	DEL	CETN3	ENST00000283122	human	ensembl	74_37	-1	known	frame_shift_del	c.189	p.A64fs	1.000	pfscan_EF_hand_dom	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	CETN3	HGNC	ENSG00000153140				84	0	0	61	18	22.7848
ARMC2	0	genome.wustl.edu	37	6	109294600	109294600	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	109294600	109294600	A	-	DEL	ARMC2	ENST00000392644	human	ensembl	74_37	+1	known	frame_shift_del	c.2487	p.N831fs	0.999	NULL	superfamily_ARM-type_fold,smart_Armadillo	-	no_errors	ARMC2	HGNC	ENSG00000118690				94	0	0	92	48	34.2857
ARHGAP18	0	genome.wustl.edu	37	6	129959603	129959603	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	129959603	129959603	T	-	DEL	ARHGAP18	ENST00000368149	human	ensembl	74_37	-1	known	frame_shift_del	c.488	p.N163fs	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP18	HGNC	ENSG00000146376				134	0	0	131	37	22.0238
NOL7	0	genome.wustl.edu	37	6	13620991	13620992	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	13620991	13620992	-	A	INS	NOL7	ENST00000451315	human	ensembl	74_37	+1	known	frame_shift_ins	c.706_707	p.Q239fs	0.542:0.993	NULL	pfam_NUC129	-	no_errors	NOL7	HGNC	ENSG00000225921				36	0	0	30	11	26.8293
CCDC28A	0	genome.wustl.edu	37	6	139097330	139097330	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	139097330	139097330	A	-	DEL	CCDC28A	ENST00000332797	human	ensembl	74_37	+1	known	frame_shift_del	c.343	p.N117fs	1.000	NULL	NULL	-	no_errors	CCDC28A	HGNC	ENSG00000024862				94	0	0	73	27	27
SHPRH	0	genome.wustl.edu	37	6	146275964	146275964	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	146275964	146275964	T	-	DEL	SHPRH	ENST00000367503	human	ensembl	74_37	-1	known	frame_shift_del	c.495	p.E166fs	0.391	NULL	pfam_SNF2_N,pfam_Histone_H1/H5_H15,superfamily_P-loop_NTPase,superfamily_Znf_FYVE_PHD,superfamily_WW_dom,smart_Helicase_ATP-bd,smart_Histone_H1/H5_H15,smart_Znf_PHD,smart_Znf_RING,smart_Helicase_C,pfscan_Znf_RING,pfscan_Helicase_C	-	no_errors	SHPRH	HGNC	ENSG00000146414				83	0	0	82	28	25.4545
JARID2	0	genome.wustl.edu	37	6	15496722	15496722	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	15496722	15496722	G	-	DEL	JARID2	ENST00000341776	human	ensembl	74_37	+1	known	frame_shift_del	c.1266	p.R425fs	0.963	NULL	pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_TF_JmjN,pfam_Znf_C5HC2,superfamily_ARID/BRIGHT_DNA-bd,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	JARID2	HGNC	ENSG00000008083				26	0	0	19	5	20.8333
MAP3K4	0	genome.wustl.edu	37	6	161469776	161469776	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	161469776	161469776	A	-	DEL	MAP3K4	ENST00000392142	human	ensembl	74_37	+1	known	frame_shift_del	c.472	p.N160fs	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K4	HGNC	ENSG00000085511				139	0	0	140	44	23.913
QKI	0	genome.wustl.edu	37	6	163899920	163899920	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	163899920	163899920	A	-	DEL	QKI	ENST00000361752	human	ensembl	74_37	+1	known	frame_shift_del	c.394	p.K134fs	1.000	smart_KH_dom	pfam_KH_dom_type_1,smart_KH_dom	-	no_errors	QKI	HGNC	ENSG00000112531				126	0	0	134	25	15.7233
KIAA0319	0	genome.wustl.edu	37	6	24596507	24596508	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	24596507	24596508	-	C	INS	KIAA0319	ENST00000378214	human	ensembl	74_37	-1	known	frame_shift_ins	c.395_394	p.D132fs	0.661:0.808	NULL	pfam_PKD/REJ-like,superfamily_PKD_dom,smart_MANSC_N,smart_Fibronectin_type3,smart_PKD/Chitinase_dom,pfscan_MANSC,pfscan_PKD_dom	-	no_errors	KIAA0319	HGNC	ENSG00000137261				82	0	0	50	16	24.2424
OR12D3	0	genome.wustl.edu	37	6	29342750	29342751	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	29342750	29342751	-	A	INS	OR12D3	ENST00000396806	human	ensembl	74_37	-1	known	frame_shift_ins	c.315_314	p.L105fs	0.723:0.779	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR12D3	HGNC	ENSG00000112462				85	0	0	74	18	19.5652
MDC1	0	genome.wustl.edu	37	6	30675170	30675172	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	30675170	30675172	CTT	-	DEL	MDC1	ENST00000376406	human	ensembl	74_37	-1	known	in_frame_del	c.3075_3073	p.K1025in_frame_del	0.094:0.113:0.130	NULL	pfam_FHA_dom,superfamily_BRCT_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_BRCT_dom,pfscan_FHA_dom	-	no_errors	MDC1	HGNC	ENSG00000137337				103	0	0	66	25	27.4725
UHRF1BP1	0	genome.wustl.edu	37	6	34839369	34839369	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	34839369	34839369	C	-	DEL	UHRF1BP1	ENST00000192788	human	ensembl	74_37	+1	known	frame_shift_del	c.3990	p.I1333fs	1.000	NULL	NULL	-	no_errors	UHRF1BP1	HGNC	ENSG00000065060				89	0	0	87	25	22.3214
PTCRA	0	genome.wustl.edu	37	6	42890866	42890866	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	42890866	42890866	C	-	DEL	PTCRA	ENST00000304672	human	ensembl	74_37	+1	known	frame_shift_del	c.160	p.P55fs	0.091	NULL	NULL	-	no_errors	PTCRA	HGNC	ENSG00000171611				100	0	0	72	23	24.2105
PLA2G7	0	genome.wustl.edu	37	6	46677134	46677134	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	46677134	46677134	T	-	DEL	PLA2G7	ENST00000274793	human	ensembl	74_37	-1	known	frame_shift_del	c.799	p.I267fs	0.996	pfam_PAF_acetylhydro,pirsf_PAF_acetylhydro_eukaryote	pfam_PAF_acetylhydro,pirsf_PAF_acetylhydro_eukaryote	-	no_errors	PLA2G7	HGNC	ENSG00000146070				64	0	0	85	21	19.8113
BAI3	0	genome.wustl.edu	37	6	69640508	69640508	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	69640508	69640508	A	-	DEL	BAI3	ENST00000370598	human	ensembl	74_37	+1	known	frame_shift_del	c.815	p.R274fs	1.000	NULL	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_CUB_dom,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI3	HGNC	ENSG00000135298				43	0	0	47	10	17.5439
TTK	0	genome.wustl.edu	37	6	80751897	80751897	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	80751897	80751897	A	-	DEL	TTK	ENST00000369798	human	ensembl	74_37	+1	known	frame_shift_del	c.2552	p.R854fs	0.102	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TTK	HGNC	ENSG00000112742				44	0	0	50	17	25.3731
CNR1	0	genome.wustl.edu	37	6	88854592	88854593	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	88854592	88854593	-	T	INS	CNR1	ENST00000369499	human	ensembl	74_37	-1	known	frame_shift_ins	c.402_401	p.N134fs	1.000:1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pirsf_Canbinoid_rcpt_1,pfscan_GPCR_Rhodpsn_7TM,prints_Cnbnoid_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pirsf_Canbinoid_rcpt_1,pfscan_GPCR_Rhodpsn_7TM,prints_Canbinoid_rcpt_1,prints_Cnbnoid_rcpt,prints_GPCR_Rhodpsn	-	no_errors	CNR1	HGNC	ENSG00000118432				31	0	0	26	7	21.2121
MDN1	0	genome.wustl.edu	37	6	90415853	90415853	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	90415853	90415853	A	-	DEL	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	frame_shift_del	c.8073	p.F2691fs	1.000	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				51	0	0	58	17	22.6667
USP45	0	genome.wustl.edu	37	6	99893879	99893879	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	6	99893879	99893879	A	-	DEL	USP45	ENST00000327681	human	ensembl	74_37	-1	known	frame_shift_del	c.1769	p.L590fs	0.114	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Znf_UBP,superfamily_Znf_FYVE_PHD,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP45	HGNC	ENSG00000123552				42	0	0	33	9	21.4286
MEPCE	0	genome.wustl.edu	37	7	100028068	100028068	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	100028068	100028068	G	-	DEL	MEPCE	ENST00000310512	human	ensembl	74_37	+1	known	frame_shift_del	c.427	p.G145fs	0.496	NULL	pfam_Bin3	-	no_errors	MEPCE	HGNC	ENSG00000146834				22	0	0	12	10	45.4545
SRRT	0	genome.wustl.edu	37	7	100479332	100479332	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	100479332	100479332	G	-	DEL	SRRT	ENST00000388793	human	ensembl	74_37	+1	known	frame_shift_del	c.304	p.G104fs	1.000	NULL	pfam_Arsenite-R_2,pfam_DUF3546	-	no_errors	SRRT	HGNC	ENSG00000087087				49	0	0	30	9	23.0769
CTTNBP2	0	genome.wustl.edu	37	7	117431604	117431604	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	117431604	117431604	T	-	DEL	CTTNBP2	ENST00000160373	human	ensembl	74_37	-1	known	frame_shift_del	c.1646	p.K549fs	1.000	NULL	pfam_Cortactin-binding_p2_N,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	CTTNBP2	HGNC	ENSG00000077063				103	0	0	96	33	25.5814
NUP205	0	genome.wustl.edu	37	7	135301910	135301911	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	135301910	135301911	-	T	INS	NUP205	ENST00000285968	human	ensembl	74_37	+1	known	frame_shift_ins	c.3605_3606	p.D1205fs	1.000:1.000	pfam_Nup186/Nup192/Nup205	pfam_Nup186/Nup192/Nup205	-	no_errors	NUP205	HGNC	ENSG00000155561				64	0	0	82	28	25.4545
ZNF767	0	genome.wustl.edu	37	7	149318362	149318362	+	RNA	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	149318362	149318362	C	-	DEL	ZNF767	ENST00000463567	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.523	-	-	-	no_errors	ZNF767	HGNC	ENSG00000133624				50	0	0	50	21	29.5775
KMT2C	0	genome.wustl.edu	37	7	151878069	151878070	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	151878069	151878070	-	G	INS	KMT2C	ENST00000355193	human	ensembl	74_37	-1	known	frame_shift_ins	c.6876_6875	p.S2293fs	0.046:0.216	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2C	HGNC	ENSG00000055609				66	0	0	73	19	20.6522
KMT2C	0	genome.wustl.edu	37	7	151949783	151949784	+	Frame_Shift_Del	DEL	TA	TA	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	TA	TA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	151949783	151949784	TA	-	DEL	KMT2C	ENST00000355193	human	ensembl	74_37	-1	known	frame_shift_del	c.1317_1316	p.I439fs	0.999:1.000	superfamily_Znf_FYVE_PHD,pfscan_Znf_DHHC_palmitoyltrfase	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2C	HGNC	ENSG00000055609				25	0	0	27	8	22.8571
RAPGEF5	0	genome.wustl.edu	37	7	22197474	22197474	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	22197474	22197474	T	-	DEL	RAPGEF5	ENST00000344041	human	ensembl	74_37	-1	known	frame_shift_del	c.1097	p.K366fs	1.000	superfamily_Ras_GEF_dom	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF5	HGNC	ENSG00000136237				41	0	0	65	17	20.7317
C7orf31	0	genome.wustl.edu	37	7	25200833	25200833	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	25200833	25200833	T	-	DEL	C7orf31	ENST00000283905	human	ensembl	74_37	-1	known	frame_shift_del	c.358	p.S120fs	1.000	NULL	NULL	-	no_errors	C7orf31	HGNC	ENSG00000153790				17	0	0	13	7	35
CARD11	0	genome.wustl.edu	37	7	2968322	2968323	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	2968322	2968323	-	G	INS	CARD11	ENST00000396946	human	ensembl	74_37	-1	known	frame_shift_ins	c.1664_1663	p.R555fs	0.395:0.080	NULL	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,superfamily_PDZ,pfscan_CARD	-	no_errors	CARD11	HGNC	ENSG00000198286				49	0	0	51	7	12.069
BBS9	0	genome.wustl.edu	37	7	33644571	33644572	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	33644571	33644572	AG	-	DEL	BBS9	ENST00000242067	human	ensembl	74_37	+1	known	frame_shift_del	c.2616_2617	p.E873fs	0.001:0.426	NULL	NULL	-	no_errors	BBS9	HGNC	ENSG00000122507				43	0	0	63	7	10
GLI3	0	genome.wustl.edu	37	7	42064869	42064869	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	42064869	42064869	C	-	DEL	GLI3	ENST00000395925	human	ensembl	74_37	-1	known	frame_shift_del	c.1350	p.Q451fs	0.504	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI3	HGNC	ENSG00000106571				51	0	0	42	7	14.2857
OGDH	0	genome.wustl.edu	37	7	44747227	44747228	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	44747227	44747228	-	C	INS	OGDH	ENST00000222673	human	ensembl	74_37	+1	known	frame_shift_ins	c.2843_2844	p.N950fs	1.000:1.000	pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	pfam_DH_E1,pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	-	no_errors	OGDH	HGNC	ENSG00000105953				157	0	0	131	42	24.2775
TNRC18	0	genome.wustl.edu	37	7	5416526	5416526	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	5416526	5416526	G	-	DEL	TNRC18	ENST00000399537	human	ensembl	74_37	-1	known	frame_shift_del	c.2560	p.Q854fs	1.000	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	TNRC18	HGNC	ENSG00000182095				19	0	0	25	5	16.6667
ANKIB1	0	genome.wustl.edu	37	7	91936914	91936914	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	7	91936914	91936914	A	-	DEL	ANKIB1	ENST00000265742	human	ensembl	74_37	+1	known	frame_shift_del	c.430	p.N146fs	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Znf_C6HC,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Znf_RING,smart_Znf_C6HC,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Ubiquitin-int_motif,pfscan_Znf_RING	-	no_errors	ANKIB1	HGNC	ENSG00000001629				56	0	0	48	34	41.4634
RGS22	0	genome.wustl.edu	37	8	100990178	100990178	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	100990178	100990178	T	-	DEL	RGS22	ENST00000360863	human	ensembl	74_37	-1	known	frame_shift_del	c.3486	p.K1162fs	0.010	NULL	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam	-	no_errors	RGS22	HGNC	ENSG00000132554				52	0	0	107	18	14.4
UBR5	0	genome.wustl.edu	37	8	103289349	103289349	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	103289349	103289349	T	-	DEL	UBR5	ENST00000520539	human	ensembl	74_37	-1	known	frame_shift_del	c.6360	p.E2121fs	0.987	NULL	pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_RCC1/BLIP-II,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin	-	no_errors	UBR5	HGNC	ENSG00000104517				69	0	0	143	36	20.1117
DCAF13	0	genome.wustl.edu	37	8	104439487	104439487	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	104439487	104439487	T	-	DEL	DCAF13	ENST00000519682	human	ensembl	74_37	+1	putative	frame_shift_del	c.619	p.F209fs	0.001	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF13	HGNC	ENSG00000164934				29	0	0	53	25	32.0513
RIMS2	0	genome.wustl.edu	37	8	104927779	104927779	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	104927779	104927779	A	-	DEL	RIMS2	ENST00000406091	human	ensembl	74_37	+1	known	frame_shift_del	c.1869	p.G626fs	0.009	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS2	HGNC	ENSG00000176406				71	0	0	86	19	18.0952
DCSTAMP	0	genome.wustl.edu	37	8	105367351	105367351	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	105367351	105367351	A	-	DEL	DCSTAMP	ENST00000297581	human	ensembl	74_37	+1	known	frame_shift_del	c.1276	p.R428fs	0.229	superfamily_ABC1_TM_dom	pfam_DC_STAMP-like,superfamily_ABC1_TM_dom	-	no_errors	DCSTAMP	HGNC	ENSG00000164935				109	0	0	195	25	11.3636
PKHD1L1	0	genome.wustl.edu	37	8	110476637	110476637	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	110476637	110476637	T	-	DEL	PKHD1L1	ENST00000378402	human	ensembl	74_37	+1	known	frame_shift_del	c.7576	p.F2527fs	1.000	superfamily_Pectin_lyase_fold/virulence,smart_PbH1	pfam_IPT,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038				30	0	0	87	15	14.7059
CASC11	0	genome.wustl.edu	37	8	128700459	128700460	+	RNA	INS	-	-	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	128700459	128700460	-	A	INS	CASC11	ENST00000502463	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	CASC11	HGNC	ENSG00000249375				8	0	0	4	3	42.8571
AGO2	0	genome.wustl.edu	37	8	141554344	141554345	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	141554344	141554345	-	G	INS	AGO2	ENST00000220592	human	ensembl	74_37	-1	known	frame_shift_ins	c.1807_1806	p.A602fs	0.998:0.203	pfam_Piwi,superfamily_RNaseH-like_dom,smart_Piwi,pfscan_Piwi	pfam_Piwi,pfam_PAZ_dom,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	AGO2	HGNC	ENSG00000123908				111	0	0	132	16	10.8108
PLEC	0	genome.wustl.edu	37	8	145049407	145049407	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	145049407	145049407	C	-	DEL	PLEC	ENST00000436759	human	ensembl	74_37	-1	known	frame_shift_del	c.131	p.G44fs	0.051	NULL	pfam_Plectin_repeat,pfam_CH-domain,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209				35	0	0	66	5	7.04225
MTUS1	0	genome.wustl.edu	37	8	17513478	17513479	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	17513478	17513479	-	T	INS	MTUS1	ENST00000262102	human	ensembl	74_37	-1	known	frame_shift_ins	c.3002_3001	p.T1001fs	0.736:0.048	superfamily_Ferritin-like_SF	superfamily_Ferritin-like_SF	-	no_errors	MTUS1	HGNC	ENSG00000129422				95	0	0	199	25	11.1607
BMP1	0	genome.wustl.edu	37	8	22054259	22054260	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	22054259	22054260	-	C	INS	BMP1	ENST00000306385	human	ensembl	74_37	+1	known	frame_shift_ins	c.1832_1833	p.N614fs	1.000:1.000	pirsf_BMP_1/tolloid-like,pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pirsf_BMP_1/tolloid-like,pfam_CUB_dom,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,smart_Peptidase_Metallo,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,prints_Peptidase_M12A,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	BMP1	HGNC	ENSG00000168487				28	0	0	60	7	10.4478
SDAD1P1	0	genome.wustl.edu	37	8	26236978	26236978	+	RNA	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	26236978	26236978	C	-	DEL	SDAD1P1	ENST00000519902	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.901	-	-	-	no_errors	SDAD1P1	HGNC	ENSG00000228451				32	0	0	72	14	16.2791
ZNF395	0	genome.wustl.edu	37	8	28210809	28210809	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	28210809	28210809	G	-	DEL	ZNF395	ENST00000344423	human	ensembl	74_37	-1	known	frame_shift_del	c.700	p.H234fs	1.000	NULL	pfscan_Znf_C2H2	-	no_errors	ZNF395	HGNC	ENSG00000186918				22	0	0	30	4	11.7647
FUT10	0	genome.wustl.edu	37	8	33246853	33246853	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	33246853	33246853	A	-	DEL	FUT10	ENST00000327671	human	ensembl	74_37	-1	known	frame_shift_del	c.840	p.F280fs	0.997	pfam_Glyco_trans_10,pirsf_Alpha-1_3-FUT_met	pfam_Glyco_trans_10,pirsf_Alpha-1_3-FUT_met	-	no_errors	FUT10	HGNC	ENSG00000172728				72	0	0	110	16	12.6984
ANK1	0	genome.wustl.edu	37	8	41522393	41522394	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	41522393	41522394	-	C	INS	ANK1	ENST00000314214	human	ensembl	74_37	-1	known	frame_shift_ins	c.149_148	p.E50fs	1.000:1.000	NULL	NULL	-	no_errors	ANK1	HGNC	ENSG00000029534				27	0	0	54	9	14.2857
ST18	0	genome.wustl.edu	37	8	53055565	53055565	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	53055565	53055565	T	-	DEL	ST18	ENST00000276480	human	ensembl	74_37	-1	known	frame_shift_del	c.2093	p.K698fs	0.999	pfam_Myelin_TF	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	ST18	HGNC	ENSG00000147488				76	0	0	135	26	16.1491
RP1	0	genome.wustl.edu	37	8	55538813	55538813	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	55538813	55538813	A	-	DEL	RP1	ENST00000220676	human	ensembl	74_37	+1	known	frame_shift_del	c.2371	p.R793fs	0.177	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237				73	0	0	124	18	12.6761
CSPP1	0	genome.wustl.edu	37	8	68076631	68076631	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	68076631	68076631	A	-	DEL	CSPP1	ENST00000262210	human	ensembl	74_37	+1	known	frame_shift_del	c.2701	p.N903fs	1.000	NULL	NULL	-	no_errors	CSPP1	HGNC	ENSG00000104218				79	0	0	100	24	19.3548
PREX2	0	genome.wustl.edu	37	8	68992721	68992721	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	68992721	68992721	T	-	DEL	PREX2	ENST00000288368	human	ensembl	74_37	+1	known	frame_shift_del	c.1686	p.S565fs	0.015	smart_DEP_dom,pfscan_DEP_dom	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889				57	0	0	106	14	11.6667
STAU2	0	genome.wustl.edu	37	8	74507470	74507471	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	74507470	74507471	-	T	INS	STAU2	ENST00000524300	human	ensembl	74_37	-1	known	frame_shift_ins	c.1092_1091	p.N364fs	1.000:1.000	pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,pfscan_dsRNA-bd_dom	pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,pfscan_dsRNA-bd_dom	-	no_errors	STAU2	HGNC	ENSG00000040341				54	0	0	100	20	16.6667
GDAP1	0	genome.wustl.edu	37	8	75263642	75263642	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	75263642	75263642	A	-	DEL	GDAP1	ENST00000220822	human	ensembl	74_37	+1	known	frame_shift_del	c.251	p.N85fs	1.000	pfam_Glutathione_S-Trfase_N,superfamily_Thioredoxin-like_fold	pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like	-	no_errors	GDAP1	HGNC	ENSG00000104381				199	0	0	423	60	12.4224
ZFHX4	0	genome.wustl.edu	37	8	77617337	77617337	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	77617337	77617337	A	-	DEL	ZFHX4	ENST00000521891	human	ensembl	74_37	+1	known	frame_shift_del	c.1014	p.K340fs	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656				112	0	0	144	17	10.559
TPD52	0	genome.wustl.edu	37	8	80915402	80915402	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	80915402	80915402	T	-	DEL	TPD52	ENST00000537855	human	ensembl	74_37	-1	known	frame_shift_del	c.569	p.N190fs	0.184	pfam_Ribosomal_S28_mit,superfamily_NA-bd_OB-fold	pfam_TPD52,pfam_Ribosomal_S28_mit,superfamily_NA-bd_OB-fold	-	no_errors	TPD52	HGNC	ENSG00000076554				45	0	0	87	14	13.8614
E2F5	0	genome.wustl.edu	37	8	86114461	86114461	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	86114461	86114461	A	-	DEL	E2F5	ENST00000256117	human	ensembl	74_37	+1	known	frame_shift_del	c.314	p.K107fs	1.000	pfam_E2F_TDP	pfam_E2F_TDP	-	no_errors	E2F5	HGNC	ENSG00000133740				42	0	0	65	6	8.4507
NBN	0	genome.wustl.edu	37	8	90967512	90967512	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	90967512	90967512	T	-	DEL	NBN	ENST00000265433	human	ensembl	74_37	-1	known	frame_shift_del	c.1396	p.R466fs	1.000	pirsf_Nibrin_met	pfam_DNA-repair_Nbs1_C,pfam_FHA_dom,superfamily_SMAD_FHA_domain,superfamily_BRCT_dom,smart_FHA_dom,pirsf_Nibrin_met,pfscan_FHA_dom	-	no_errors	NBN	HGNC	ENSG00000104320				81	0	0	230	14	5.7377
SLC26A7	0	genome.wustl.edu	37	8	92406218	92406218	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	92406218	92406218	T	-	DEL	SLC26A7	ENST00000309536	human	ensembl	74_37	+1	known	frame_shift_del	c.1886	p.F631fs	0.996	pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom	-	no_errors	SLC26A7	HGNC	ENSG00000147606				63	0	0	118	21	15.1079
ESRP1	0	genome.wustl.edu	37	8	95683841	95683842	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	8	95683841	95683842	-	G	INS	ESRP1	ENST00000433389	human	ensembl	74_37	+1	known	frame_shift_ins	c.1394_1395	p.E467fs	1.000:1.000	smart_RRM_dom	superfamily_RNaseH-like_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	ESRP1	HGNC	ENSG00000104413				40	0	0	111	18	13.9535
PALM2-AKAP2	0	genome.wustl.edu	37	9	112898790	112898790	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	112898790	112898790	C	-	DEL	PALM2-AKAP2	ENST00000374530	human	ensembl	74_37	+1	known	frame_shift_del	c.966	p.P324fs	0.767	NULL	pfam_Paralemmin,pfam_RII_binding_1	-	no_errors	PALM2-AKAP2	HGNC	ENSG00000157654				59	0	0	55	10	15.3846
TYRP1	0	genome.wustl.edu	37	9	12702411	12702414	+	Frame_Shift_Del	DEL	ACAA	ACAA	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	ACAA	ACAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	12702411	12702414	ACAA	-	DEL	TYRP1	ENST00000388918	human	ensembl	74_37	+1	known	frame_shift_del	c.1054_1057	p.N353fs	1.000:1.000:0.997:0.999	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre,prints_Tyrosinase	-	no_errors	TYRP1	HGNC	ENSG00000107165				56	0	0	55	19	25.6757
ARPC5L	0	genome.wustl.edu	37	9	127639218	127639218	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	127639218	127639218	A	-	DEL	ARPC5L	ENST00000259477	human	ensembl	74_37	+1	known	frame_shift_del	c.461	p.*154fs	1.000	NULL	pfam_ARP2/3_p16_Arc,superfamily_ARP2/3_p16_Arc	-	no_errors	ARPC5L	HGNC	ENSG00000136950				31	0	0	45	8	15.0943
GOLGA1	0	genome.wustl.edu	37	9	127684160	127684160	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	127684160	127684160	T	-	DEL	GOLGA1	ENST00000373555	human	ensembl	74_37	-1	known	frame_shift_del	c.573	p.E192fs	1.000	NULL	pfam_GRIP,superfamily_Prefoldin,superfamily_GRIP,smart_GRIP,pfscan_GRIP	-	no_errors	GOLGA1	HGNC	ENSG00000136935				96	0	0	132	23	14.8387
GOLGA2	0	genome.wustl.edu	37	9	131019390	131019390	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	131019390	131019390	A	-	DEL	GOLGA2	ENST00000421699	human	ensembl	74_37	-1	known	frame_shift_del	c.2965	p.Y989fs	1.000	NULL	superfamily_CofA_tubulin-bd	-	no_errors	GOLGA2	HGNC	ENSG00000167110				148	0	0	152	40	20.8333
FUBP3	0	genome.wustl.edu	37	9	133506013	133506014	+	Splice_Site	INS	-	-	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	133506013	133506014	-	G	INS	FUBP3	ENST00000319725	human	ensembl	74_37	+1	known	splice_site_ins	c.1118-2_1118-1	e13-1	1.000:1.000	-	-	-	no_errors	FUBP3	HGNC	ENSG00000107164				71	0	0	64	16	20
PRRC2B	0	genome.wustl.edu	37	9	134371131	134371133	+	In_Frame_Del	DEL	AAC	AAC	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	AAC	AAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	134371131	134371133	AAC	-	DEL	PRRC2B	ENST00000357304	human	ensembl	74_37	+1	known	in_frame_del	c.6560_6562	p.Q2188in_frame_del	0.930:0.639:0.720	NULL	pfam_BAT2_N	-	no_errors	PRRC2B	HGNC	ENSG00000130723				36	0	0	34	10	22.7273
SETX	0	genome.wustl.edu	37	9	135203509	135203509	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	135203509	135203509	T	-	DEL	SETX	ENST00000372169	human	ensembl	74_37	-1	known	frame_shift_del	c.3476	p.K1159fs	0.001	NULL	superfamily_P-loop_NTPase	-	no_errors	SETX	HGNC	ENSG00000107290				79	0	0	100	22	18.0328
PMPCA	0	genome.wustl.edu	37	9	139311652	139311652	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	139311652	139311652	G	-	DEL	PMPCA	ENST00000371717	human	ensembl	74_37	+1	known	frame_shift_del	c.883	p.I297fs	1.000	pfam_Peptidase_M16_C	pfam_Pept_M16_N,pfam_Peptidase_M16_C,superfamily_Metalloenz_LuxS/M16	-	no_errors	PMPCA	HGNC	ENSG00000165688				23	0	0	46	8	14.8148
TPRN	0	genome.wustl.edu	37	9	140087024	140087025	+	In_Frame_Ins	INS	-	-	TCC			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	140087024	140087025	-	TCC	INS	TPRN	ENST00000409012	human	ensembl	74_37	-1	known	in_frame_ins	c.1845_1844	p.619in_frame_insE	0.658:0.745	NULL	NULL	-	no_errors	TPRN	HGNC	ENSG00000176058				25	0	0	35	6	14.6341
PNPLA7	0	genome.wustl.edu	37	9	140356679	140356679	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	140356679	140356679	G	-	DEL	PNPLA7	ENST00000406427	human	ensembl	74_37	-1	known	frame_shift_del	c.3597	p.I1200fs	1.000	superfamily_Acyl_Trfase/lysoPLipase	pfam_cNMP-bd_dom,pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	PNPLA7	HGNC	ENSG00000130653				46	0	0	31	8	20.5128
MIR602	0	genome.wustl.edu	37	9	140732961	140732961	+	RNA	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	140732961	140732961	C	-	DEL	MIR602	ENST00000384960	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.093	-	-	-	no_errors	MIR602	HGNC	ENSG00000207693				28	0	0	31	12	27.907
BNC2	0	genome.wustl.edu	37	9	16436375	16436375	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	16436375	16436375	G	-	DEL	BNC2	ENST00000380672	human	ensembl	74_37	-1	known	frame_shift_del	c.1817	p.P606fs	0.551	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BNC2	HGNC	ENSG00000173068				83	0	0	88	11	11.1111
ADAMTSL1	0	genome.wustl.edu	37	9	18680350	18680350	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	18680350	18680350	G	-	DEL	ADAMTSL1	ENST00000327883	human	ensembl	74_37	+1	known	frame_shift_del	c.1177	p.G395fs	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,pfam_ADAM_spacer1,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Thrombospondin_1_rpt	-	no_errors	ADAMTSL1	HGNC	ENSG00000178031				43	0	0	40	9	18.3673
PTENP1	0	genome.wustl.edu	37	9	33675365	33675365	+	RNA	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	33675365	33675365	A	-	DEL	PTENP1	ENST00000532280	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	PTENP1	HGNC	ENSG00000237984				12	0	0	1	15	93.75
TRMT10B	0	genome.wustl.edu	37	9	37763633	37763633	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	37763633	37763633	C	-	DEL	TRMT10B	ENST00000297994	human	ensembl	74_37	+1	known	frame_shift_del	c.303	p.Q103fs	0.964	NULL	pfam_tRNA_m1G_MeTrfase	-	no_errors	TRMT10B	HGNC	ENSG00000165275				70	0	0	112	19	14.5038
KGFLP2	0	genome.wustl.edu	37	9	41962602	41962602	+	RNA	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	41962602	41962602	G	-	DEL	KGFLP2	ENST00000454645	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	RP11-204M4.2	Clone_based_vega_gene	ENSG00000204837				87	0	0	115	13	10.1562
SPATA31D1	0	genome.wustl.edu	37	9	84603897	84603897	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	84603897	84603897	A	-	DEL	SPATA31D1	ENST00000344803	human	ensembl	74_37	+1	known	frame_shift_del	c.164	p.N57fs	0.000	NULL	NULL	-	no_errors	SPATA31D1	HGNC	ENSG00000214929				71	0	0	116	23	16.5468
KIF27	0	genome.wustl.edu	37	9	86452186	86452186	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	86452186	86452186	G	-	DEL	KIF27	ENST00000297814	human	ensembl	74_37	-1	known	frame_shift_del	c.3936	p.S1313fs	0.992	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF27	HGNC	ENSG00000165115				100	0	0	144	14	8.86076
DAPK1	0	genome.wustl.edu	37	9	90321802	90321802	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	90321802	90321802	G	-	DEL	DAPK1	ENST00000469640	human	ensembl	74_37	+1	known	frame_shift_del	c.3891	p.Y1300fs	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ankyrin_rpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death_domain,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Ankyrin_rpt,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_Prot_kinase_dom,prints_Ankyrin_rpt	-	no_errors	DAPK1	HGNC	ENSG00000196730				71	0	0	78	22	22
SECISBP2	0	genome.wustl.edu	37	9	91956314	91956315	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	91956314	91956315	-	G	INS	SECISBP2	ENST00000375807	human	ensembl	74_37	+1	known	frame_shift_ins	c.1355_1356	p.M455fs	1.000:1.000	NULL	pfam_Ribosomal_L7Ae/L30e/S12e/Gad45	-	no_errors	SECISBP2	HGNC	ENSG00000187742				67	0	0	94	27	22.314
PHF2	0	genome.wustl.edu	37	9	96422612	96422612	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	9	96422612	96422612	A	-	DEL	PHF2	ENST00000359246	human	ensembl	74_37	+1	known	frame_shift_del	c.1468	p.K492fs	1.000	NULL	pfam_JmjC_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF2	HGNC	ENSG00000197724				13	0	0	15	2	11.7647
NRK	0	genome.wustl.edu	37	X	105156736	105156736	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	105156736	105156736	A	-	DEL	NRK	ENST00000428173	human	ensembl	74_37	+1	known	frame_shift_del	c.2341	p.I783fs	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Citron,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom	-	no_errors	NRK	HGNC	ENSG00000123572				16	0	0	11	5	31.25
TEX13B	0	genome.wustl.edu	37	X	107224932	107224933	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	107224932	107224933	CT	-	DEL	TEX13B	ENST00000302917	human	ensembl	74_37	-1	known	frame_shift_del	c.426_425	p.E142fs	0.005:0.009	NULL	NULL	-	no_errors	TEX13B	HGNC	ENSG00000170925				110	0	0	117	47	28.6585
TLR8	0	genome.wustl.edu	37	X	12939876	12939876	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	12939876	12939876	A	-	DEL	TLR8	ENST00000218032	human	ensembl	74_37	+1	known	frame_shift_del	c.2717	p.E907fs	1.000	pfam_TIR_dom,superfamily_TIR_dom,smart_TIR_dom,pfscan_TIR_dom	pfam_Leu-rich_rpt,pfam_TIR_dom,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR8	HGNC	ENSG00000101916				142	0	0	143	47	24.7368
HS6ST2	0	genome.wustl.edu	37	X	131762581	131762582	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	131762581	131762582	-	A	INS	HS6ST2	ENST00000521489	human	ensembl	74_37	-1	known	frame_shift_ins	c.1608_1607	p.L536fs	1.000:1.000	NULL	pfam_Sulfotransferase,superfamily_P-loop_NTPase	-	no_errors	HS6ST2	HGNC	ENSG00000171004				228	0	0	247	59	19.281
AFF2	0	genome.wustl.edu	37	X	148039963	148039963	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	148039963	148039963	C	-	DEL	AFF2	ENST00000370460	human	ensembl	74_37	+1	known	frame_shift_del	c.2665	p.H890fs	0.986	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF2	HGNC	ENSG00000155966				314	0	0	243	41	14.4366
MAGEA8	0	genome.wustl.edu	37	X	149013702	149013702	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	149013702	149013702	C	-	DEL	MAGEA8	ENST00000286482	human	ensembl	74_37	+1	known	frame_shift_del	c.656	p.P220fs	0.002	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA8	HGNC	ENSG00000156009				117	0	0	98	10	9.25926
MAGEA8	0	genome.wustl.edu	37	X	149013887	149013888	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	149013887	149013888	-	T	INS	MAGEA8	ENST00000286482	human	ensembl	74_37	+1	known	frame_shift_ins	c.841_842	p.A282fs	0.020:0.020	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA8	HGNC	ENSG00000156009				287	0	0	234	81	25.7143
MAMLD1	0	genome.wustl.edu	37	X	149639633	149639635	+	In_Frame_Del	DEL	GCA	GCA	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	GCA	GCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	149639633	149639635	GCA	-	DEL	MAMLD1	ENST00000432680	human	ensembl	74_37	+1	known	in_frame_del	c.1713_1715	p.Q575in_frame_del	0.997:1.000:0.996	NULL	NULL	-	no_errors	MAMLD1	HGNC	ENSG00000013619				78	0	0	61	13	17.5676
PRRG3	0	genome.wustl.edu	37	X	150869296	150869297	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	150869296	150869297	-	G	INS	PRRG3	ENST00000370353	human	ensembl	74_37	+1	known	frame_shift_ins	c.487_488	p.R166fs	0.000:0.000	NULL	pfam_GLA_domain,superfamily_GLA_domain,smart_GLA_domain,pfscan_GLA_domain,prints_GLA_domain	-	no_errors	PRRG3	HGNC	ENSG00000130032				40	0	0	35	8	18.6047
CNGA2	0	genome.wustl.edu	37	X	150912002	150912002	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	150912002	150912002	C	-	DEL	CNGA2	ENST00000329903	human	ensembl	74_37	+1	known	frame_shift_del	c.1027	p.P344fs	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA2	HGNC	ENSG00000183862				124	0	0	122	40	24.6914
CSAG4	0	genome.wustl.edu	37	X	151896259	151896259	+	RNA	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	151896259	151896259	T	-	DEL	CSAG4	ENST00000361201	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CSAG4	HGNC	ENSG00000242599				52	0	0	47	13	21.6667
F8	0	genome.wustl.edu	37	X	154158195	154158195	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	154158195	154158195	T	-	DEL	F8	ENST00000360256	human	ensembl	74_37	-1	known	frame_shift_del	c.3870	p.E1292fs	0.001	NULL	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F8	HGNC	ENSG00000185010				107	0	0	92	31	25.2033
GPR64	0	genome.wustl.edu	37	X	19046358	19046359	+	Splice_Site	INS	-	-	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	19046358	19046359	-	A	INS	GPR64	ENST00000379869	human	ensembl	74_37	-1	known	splice_site_ins	c.359-3_359-2	e8-2	0.998:0.998	-	-	-	no_errors	GPR64	HGNC	ENSG00000173698				46	0	0	35	14	28.5714
MBTPS2	0	genome.wustl.edu	37	X	21863335	21863335	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	21863335	21863335	T	-	DEL	MBTPS2	ENST00000379484	human	ensembl	74_37	+1	known	frame_shift_del	c.271	p.L93fs	1.000	NULL	pfam_Peptidase_M50,superfamily_PDZ,prints_MBTPS2	-	no_errors	MBTPS2	HGNC	ENSG00000012174				137	0	0	117	41	25.9494
CXXC1P1	0	genome.wustl.edu	37	X	47583505	47583505	+	RNA	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	47583505	47583505	C	-	DEL	CXXC1P1	ENST00000483225	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	CXXC1P1	HGNC	ENSG00000187893				9	0	0	6	3	33.3333
TFE3	0	genome.wustl.edu	37	X	48887952	48887952	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	48887952	48887952	C	-	DEL	TFE3	ENST00000315869	human	ensembl	74_37	-1	known	frame_shift_del	c.1445	p.G482fs	0.037	pfam_bHLH_ZIP_TF_MiT/TFE	pfam_bHLH_ZIP_TF_MiT/TFE,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	TFE3	HGNC	ENSG00000068323				76	0	0	63	29	31.5217
TSPYL2	0	genome.wustl.edu	37	X	53112052	53112052	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	53112052	53112052	G	-	DEL	TSPYL2	ENST00000375442	human	ensembl	74_37	+1	known	frame_shift_del	c.372	p.S127fs	0.022	NULL	pfam_NAP_family	-	no_errors	TSPYL2	HGNC	ENSG00000184205				10	0	0	7	7	50
TNMD	0	genome.wustl.edu	37	X	99854069	99854070	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4292-01A-01D-1126-08	TCGA-BR-4292-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d7fafe9d-132f-4939-b049-9cc998ec1bc6	126ae43a-7a3b-4037-a5dc-9ad55b2f24bc	X	99854069	99854070	-	A	INS	TNMD	ENST00000373031	human	ensembl	74_37	+1	known	frame_shift_ins	c.634_635	p.G215fs	0.000:0.000	NULL	pfam_BRICHOS_dom,superfamily_Chitin-bd_1,pfscan_BRICHOS_dom	-	no_errors	TNMD	HGNC	ENSG00000000005				34	0	0	44	10	18.5185
