Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ENSG00000203849	0	genome.wustl.edu	37	1	142635984	142635984	+	RNA	SNP	G	G	A			TCGA-BR-4294-01A-01D-1126-08	TCGA-BR-4294-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb82319e-a676-4d80-b3e6-95f29d9266b3	5afac6e7-55d3-49a2-89e4-6509ed424a83	1	142635984	142635984	G	A	SNP	ENSG00000203849	ENST00000369381	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.052	-	-	-	no_errors	RP11-417J8.6	Clone_based_vega_gene	ENSG00000203849				9	0	0	3	3	50
KIRREL	0	genome.wustl.edu	37	1	158045982	158045982	+	Silent	SNP	G	G	A			TCGA-BR-4294-01A-01D-1126-08	TCGA-BR-4294-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb82319e-a676-4d80-b3e6-95f29d9266b3	5afac6e7-55d3-49a2-89e4-6509ed424a83	1	158045982	158045982	G	A	SNP	KIRREL	ENST00000368173	human	ensembl	74_37	+1	known	silent	c.132	p.L44	1.000	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	KIRREL	HGNC	ENSG00000183853				39	0	0	42	21	33.3333
PLXNA2	0	genome.wustl.edu	37	1	208216499	208216499	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4294-01A-01D-1126-08	TCGA-BR-4294-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb82319e-a676-4d80-b3e6-95f29d9266b3	5afac6e7-55d3-49a2-89e4-6509ed424a83	1	208216499	208216499	G	C	SNP	PLXNA2	ENST00000367033	human	ensembl	74_37	-1	known	missense	c.3924	p.D1308E	1.000	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA2	HGNC	ENSG00000076356				56	0	0	71	21	22.8261
CAMTA1	0	genome.wustl.edu	37	1	7725006	7725006	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4294-01A-01D-1126-08	TCGA-BR-4294-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb82319e-a676-4d80-b3e6-95f29d9266b3	5afac6e7-55d3-49a2-89e4-6509ed424a83	1	7725006	7725006	G	A	SNP	CAMTA1	ENST00000303635	human	ensembl	74_37	+1	known	missense	c.2399	p.S800N	0.004	NULL	pfam_CG-1_dom,pfam_IPT,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA1	HGNC	ENSG00000171735				101	1	0.980392	6	64	91.4286
CWF19L1	0	genome.wustl.edu	37	10	102006563	102006563	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4294-01A-01D-1126-08	TCGA-BR-4294-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb82319e-a676-4d80-b3e6-95f29d9266b3	5afac6e7-55d3-49a2-89e4-6509ed424a83	10	102006563	102006563	G	A	SNP	CWF19L1	ENST00000354105	human	ensembl	74_37	-1	known	missense	c.838	p.L280F	0.013	NULL	pfam_Cwf19-like_C_dom-1,pfam_Cwf19-like_C_dom-2,superfamily_HIT-like	-	no_errors	CWF19L1	HGNC	ENSG00000095485				52	0	0	24	21	46.6667
C10orf54	0	genome.wustl.edu	37	10	73521610	73521610	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4294-01A-01D-1126-08	TCGA-BR-4294-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb82319e-a676-4d80-b3e6-95f29d9266b3	5afac6e7-55d3-49a2-89e4-6509ed424a83	10	73521610	73521610	G	A	SNP	C10orf54	ENST00000394957	human	ensembl	74_37	-1	known	missense	c.256	p.R86C	1.000	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	C10orf54	HGNC	ENSG00000107738				33	0	0	44	6	12
ITIH5	0	genome.wustl.edu	37	10	7608308	7608308	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4294-01A-01D-1126-08	TCGA-BR-4294-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb82319e-a676-4d80-b3e6-95f29d9266b3	5afac6e7-55d3-49a2-89e4-6509ed424a83	10	7608308	7608308	G	A	SNP	ITIH5	ENST00000256861	human	ensembl	74_37	-1	known	missense	c.2212	p.R738C	1.000	pfam_ITI_HC_C	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH5	HGNC	ENSG00000123243				44	0	0	32	23	41.8182
RNLS	0	genome.wustl.edu	37	10	90341418	90341418	+	Silent	SNP	C	C	T			TCGA-BR-4294-01A-01D-1126-08	TCGA-BR-4294-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb82319e-a676-4d80-b3e6-95f29d9266b3	5afac6e7-55d3-49a2-89e4-6509ed424a83	10	90341418	90341418	C	T	SNP	RNLS	ENST00000331772	human	ensembl	74_37	-1	known	silent	c.273	p.S91	0.972	NULL	pfam_Amino_oxidase	-	no_errors	RNLS	HGNC	ENSG00000184719				54	0	0	21	9	30
PHLDA2	0	genome.wustl.edu	37	11	2950367	2950367	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4294-01A-01D-1126-08	TCGA-BR-4294-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb82319e-a676-4d80-b3e6-95f29d9266b3	5afac6e7-55d3-49a2-89e4-6509ed424a83	11	2950367	2950367	G	T	SNP	PHLDA2	ENST00000314222	human	ensembl	74_37	-1	known	missense	c.228	p.D76E	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology	-	no_errors	PHLDA2	HGNC	ENSG00000181649				18	0	0	2	10	83.3333
PAMR1	0	genome.wustl.edu	37	11	35513643	35513643	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4294-01A-01D-1126-08	TCGA-BR-4294-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb82319e-a676-4d80-b3e6-95f29d9266b3	5afac6e7-55d3-49a2-89e4-6509ed424a83	11	35513643	35513643	C	G	SNP	PAMR1	ENST00000278360	human	ensembl	74_37	-1	known	missense	c.329	p.G110A	1.000	smart_EG-like_dom	pfam_Peptidase_S1,pfam_CUB_dom,pfam_Sushi_SCR_CCP,pfam_EG-like_dom,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_EG-like_dom,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_Sushi_SCR_CCP,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_CUB_dom,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1	-	no_errors	PAMR1	HGNC	ENSG00000149090				263	1	0.378788	47	71	60.1695
TMEM126B	0	genome.wustl.edu	37	11	85347202	85347202	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4294-01A-01D-1126-08	TCGA-BR-4294-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb82319e-a676-4d80-b3e6-95f29d9266b3	5afac6e7-55d3-49a2-89e4-6509ed424a83	11	85347202	85347202	G	A	SNP	TMEM126B	ENST00000358867	human	ensembl	74_37	+1	known	missense	c.622	p.G208R	0.980	pfam_DUF1370_TMEM126	pfam_DUF1370_TMEM126	-	no_errors	TMEM126B	HGNC	ENSG00000171204				61	0	0	2	18	90
BTBD11	0	genome.wustl.edu	37	12	108004034	108004034	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4294-01A-01D-1126-08	TCGA-BR-4294-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb82319e-a676-4d80-b3e6-95f29d9266b3	5afac6e7-55d3-49a2-89e4-6509ed424a83	12	108004034	108004034	G	A	SNP	BTBD11	ENST00000280758	human	ensembl	74_37	+1	known	missense	c.1711	p.D571N	1.000	NULL	pfam_Ankyrin_rpt,pfam_BTB_POZ,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,superfamily_Histone-fold,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like	-	no_errors	BTBD11	HGNC	ENSG00000151136				113	0	0	103	11	9.64912
ZBTB39	0	genome.wustl.edu	37	12	57397688	57397688	+	Silent	SNP	C	C	T			TCGA-BR-4294-01A-01D-1126-08	TCGA-BR-4294-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb82319e-a676-4d80-b3e6-95f29d9266b3	5afac6e7-55d3-49a2-89e4-6509ed424a83	12	57397688	57397688	C	T	SNP	ZBTB39	ENST00000300101	human	ensembl	74_37	-1	known	silent	c.1014	p.R338	0.977	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB39	HGNC	ENSG00000166860				154	0	0	79	59	42.7536
SPRED1	0	genome.wustl.edu	37	15	38643405	38643405	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4294-01A-01D-1126-08	TCGA-BR-4294-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb82319e-a676-4d80-b3e6-95f29d9266b3	5afac6e7-55d3-49a2-89e4-6509ed424a83	15	38643405	38643405	A	T	SNP	SPRED1	ENST00000299084	human	ensembl	74_37	+1	known	missense	c.875	p.Y292F	1.000	NULL	pfam_Sprouty,pfam_WH1/EVH1,smart_WH1/EVH1,pfscan_WH1/EVH1	-	no_errors	SPRED1	HGNC	ENSG00000166068				94	0	0	10	33	76.7442
STX4	0	genome.wustl.edu	37	16	31051116	31051116	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4294-01A-01D-1126-08	TCGA-BR-4294-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb82319e-a676-4d80-b3e6-95f29d9266b3	5afac6e7-55d3-49a2-89e4-6509ed424a83	16	31051116	31051116	G	T	SNP	STX4	ENST00000313843	human	ensembl	74_37	+1	known	missense	c.886	p.V296F	0.000	NULL	pfam_Syntaxin_N,pfam_T_SNARE_dom,superfamily_t-SNARE,smart_Syntaxin_N,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX4	HGNC	ENSG00000103496				145	0	0	85	5	5.55556
FTO	0	genome.wustl.edu	37	16	53913791	53913791	+	Silent	SNP	C	C	T			TCGA-BR-4294-01A-01D-1126-08	TCGA-BR-4294-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb82319e-a676-4d80-b3e6-95f29d9266b3	5afac6e7-55d3-49a2-89e4-6509ed424a83	16	53913791	53913791	C	T	SNP	FTO	ENST00000471389	human	ensembl	74_37	+1	known	silent	c.1011	p.R337	0.994	NULL	NULL	-	no_errors	FTO	HGNC	ENSG00000140718				122	0	0	1	33	97.0588
USP7	0	genome.wustl.edu	37	16	9009114	9009114	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4294-01A-01D-1126-08	TCGA-BR-4294-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb82319e-a676-4d80-b3e6-95f29d9266b3	5afac6e7-55d3-49a2-89e4-6509ed424a83	16	9009114	9009114	T	A	SNP	USP7	ENST00000344836	human	ensembl	74_37	-1	known	missense	c.1075	p.N359Y	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_MATH,pfam_USP7_ICP0-binding_dom,superfamily_TRAF-like,smart_MATH,pfscan_MATH,pfscan_Peptidase_C19/C67	-	no_errors	USP7	HGNC	ENSG00000187555				64	0	0	26	4	13.3333
LRRC46	0	genome.wustl.edu	37	17	45913414	45913414	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4294-01A-01D-1126-08	TCGA-BR-4294-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb82319e-a676-4d80-b3e6-95f29d9266b3	5afac6e7-55d3-49a2-89e4-6509ed424a83	17	45913414	45913414	G	C	SNP	LRRC46	ENST00000269025	human	ensembl	74_37	+1	known	missense	c.398	p.S133T	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC46	HGNC	ENSG00000141294				29	0	0	15	11	42.3077
MED13	0	genome.wustl.edu	37	17	60140634	60140634	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4294-01A-01D-1126-08	TCGA-BR-4294-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb82319e-a676-4d80-b3e6-95f29d9266b3	5afac6e7-55d3-49a2-89e4-6509ed424a83	17	60140634	60140634	T	A	SNP	MED13	ENST00000397786	human	ensembl	74_37	-1	known	missense	c.95	p.K32I	1.000	pfam_Mediator_Med13_N_met/fun	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13	HGNC	ENSG00000108510				102	1	0.970874	39	45	53.5714
RNF213	0	genome.wustl.edu	37	17	78282871	78282871	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4294-01A-01D-1126-08	TCGA-BR-4294-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb82319e-a676-4d80-b3e6-95f29d9266b3	5afac6e7-55d3-49a2-89e4-6509ed424a83	17	78282871	78282871	A	C	SNP	RNF213	ENST00000582970	human	ensembl	74_37	+1	known	missense	c.2555	p.H852P	0.325	NULL	superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821				122	0	0	84	11	11.5789
NCAN	0	genome.wustl.edu	37	19	19338422	19338422	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4294-01A-01D-1126-08	TCGA-BR-4294-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb82319e-a676-4d80-b3e6-95f29d9266b3	5afac6e7-55d3-49a2-89e4-6509ed424a83	19	19338422	19338422	G	A	SNP	NCAN	ENST00000252575	human	ensembl	74_37	+1	known	missense	c.1993	p.A665T	0.000	NULL	pfam_Link,pfam_C-type_lectin,pfam_Sushi_SCR_CCP,pfam_Ig_V-set,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Link,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link,prints_AntifreezeII	-	no_errors	NCAN	HGNC	ENSG00000130287				66	0	0	42	49	53.8462
RBM42	0	genome.wustl.edu	37	19	36128233	36128233	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4294-01A-01D-1126-08	TCGA-BR-4294-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb82319e-a676-4d80-b3e6-95f29d9266b3	5afac6e7-55d3-49a2-89e4-6509ed424a83	19	36128233	36128233	C	T	SNP	RBM42	ENST00000262633	human	ensembl	74_37	+1	known	missense	c.1309	p.R437C	0.987	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM42	HGNC	ENSG00000126254				41	0	0	67	4	5.6338
UHRF1	0	genome.wustl.edu	37	19	4930825	4930825	+	RNA	SNP	C	C	A			TCGA-BR-4294-01A-01D-1126-08	TCGA-BR-4294-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb82319e-a676-4d80-b3e6-95f29d9266b3	5afac6e7-55d3-49a2-89e4-6509ed424a83	19	4930825	4930825	C	A	SNP	UHRF1	ENST00000262952	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.977	-	-	-	no_errors	UHRF1	HGNC	ENSG00000034063				28	0	0	24	3	11.1111
ZNF534	0	genome.wustl.edu	37	19	52941686	52941686	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4294-01A-01D-1126-08	TCGA-BR-4294-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb82319e-a676-4d80-b3e6-95f29d9266b3	5afac6e7-55d3-49a2-89e4-6509ed424a83	19	52941686	52941686	C	A	SNP	ZNF534	ENST00000332323	human	ensembl	74_37	+1	known	missense	c.1012	p.P338T	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF534	HGNC	ENSG00000198633				23	0	0	14	10	41.6667
MUC16	0	genome.wustl.edu	37	19	9085666	9085666	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4294-01A-01D-1126-08	TCGA-BR-4294-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb82319e-a676-4d80-b3e6-95f29d9266b3	5afac6e7-55d3-49a2-89e4-6509ed424a83	19	9085666	9085666	G	T	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.6149	p.S2050Y	0.067	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				186	0	0	88	59	40.1361
BUB1	0	genome.wustl.edu	37	2	111419292	111419292	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4294-01A-01D-1126-08	TCGA-BR-4294-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb82319e-a676-4d80-b3e6-95f29d9266b3	5afac6e7-55d3-49a2-89e4-6509ed424a83	2	111419292	111419292	C	A	SNP	BUB1	ENST00000302759	human	ensembl	74_37	-1	known	missense	c.1084	p.V362F	0.000	NULL	pfam_Mad3_BUB1_I,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Mad3_BUB1_I,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	BUB1	HGNC	ENSG00000169679				83	0	0	46	37	44.5783
ST3GAL5	0	genome.wustl.edu	37	2	86075089	86075089	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4294-01A-01D-1126-08	TCGA-BR-4294-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb82319e-a676-4d80-b3e6-95f29d9266b3	5afac6e7-55d3-49a2-89e4-6509ed424a83	2	86075089	86075089	T	C	SNP	ST3GAL5	ENST00000377332	human	ensembl	74_37	-1	known	missense	c.557	p.H186R	0.997	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST3GAL5	HGNC	ENSG00000115525				182	0	0	103	40	27.972
FRG1B	0	genome.wustl.edu	37	20	29625971	29625971	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4294-01A-01D-1126-08	TCGA-BR-4294-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb82319e-a676-4d80-b3e6-95f29d9266b3	5afac6e7-55d3-49a2-89e4-6509ed424a83	20	29625971	29625971	C	A	SNP	FRG1B	ENST00000278882	human	ensembl	74_37	+1	known	missense	c.215	p.P72Q	1.000	pfam_FRG1,superfamily_Actin_cross-linking	pfam_FRG1,superfamily_Actin_cross-linking	-	no_errors	FRG1B	HGNC	ENSG00000149531				176	1	0.564972	126	7	5.26316
APCDD1L	0	genome.wustl.edu	37	20	57045664	57045664	+	Splice_Site	SNP	C	C	A			TCGA-BR-4294-01A-01D-1126-08	TCGA-BR-4294-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb82319e-a676-4d80-b3e6-95f29d9266b3	5afac6e7-55d3-49a2-89e4-6509ed424a83	20	57045664	57045664	C	A	SNP	APCDD1L	ENST00000439429	human	ensembl	74_37	-1	known	splice_site	c.221+1	e2+1	1.000	-	-	-	no_errors	APCDD1L	HGNC	ENSG00000198768				12	0	0	25	3	10.7143
IGHV1OR21-1	0	genome.wustl.edu	37	21	10862639	10862639	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4294-01A-01D-1126-08	TCGA-BR-4294-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb82319e-a676-4d80-b3e6-95f29d9266b3	5afac6e7-55d3-49a2-89e4-6509ed424a83	21	10862639	10862639	G	T	SNP	IGHV1OR21-1	ENST00000559480	human	ensembl	74_37	+1	known	missense	c.18	p.R6S	0.000	NULL	pfam_Ig_V-set,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	IGHV1OR21-1	HGNC	ENSG00000169861				497	0	0	336	45	11.811
DSCR10	0	genome.wustl.edu	37	21	39580370	39580370	+	RNA	SNP	C	C	A			TCGA-BR-4294-01A-01D-1126-08	TCGA-BR-4294-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb82319e-a676-4d80-b3e6-95f29d9266b3	5afac6e7-55d3-49a2-89e4-6509ed424a83	21	39580370	39580370	C	A	SNP	DSCR10	ENST00000432141	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	DSCR10	HGNC	ENSG00000233316				166	0	0	84	66	44
POM121L9P	0	genome.wustl.edu	37	22	24659512	24659512	+	RNA	SNP	A	A	G			TCGA-BR-4294-01A-01D-1126-08	TCGA-BR-4294-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb82319e-a676-4d80-b3e6-95f29d9266b3	5afac6e7-55d3-49a2-89e4-6509ed424a83	22	24659512	24659512	A	G	SNP	POM121L9P	ENST00000414583	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	POM121L9P	HGNC	ENSG00000128262				18	0	0	16	3	15.7895
LMOD3	0	genome.wustl.edu	37	3	69168781	69168781	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4294-01A-01D-1126-08	TCGA-BR-4294-11A-01D-1126-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb82319e-a676-4d80-b3e6-95f29d9266b3	5afac6e7-55d3-49a2-89e4-6509ed424a83	3	69168781	69168781	T	A	SNP	LMOD3	ENST00000420581	human	ensembl	74_37	-1	known	missense	c.725	p.D242V	1.000	NULL	pfam_Tropomodulin	-	no_errors	LMOD3	HGNC	ENSG00000163380				132	1	0.75188	109	8	6.83761
LMOD3	0	genome.wustl.edu	37	3	69168783	69168783	+	Silent	SNP	C	C	A			TCGA-BR-4294-01A-01D-1126-08	TCGA-BR-4294-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb82319e-a676-4d80-b3e6-95f29d9266b3	5afac6e7-55d3-49a2-89e4-6509ed424a83	3	69168783	69168783	C	A	SNP	LMOD3	ENST00000420581	human	ensembl	74_37	-1	known	silent	c.723	p.L241	0.991	NULL	pfam_Tropomodulin	-	no_errors	LMOD3	HGNC	ENSG00000163380				133	0	0	110	7	5.98291
BAI3	0	genome.wustl.edu	37	6	70064152	70064152	+	Silent	SNP	A	A	C			TCGA-BR-4294-01A-01D-1126-08	TCGA-BR-4294-11A-01D-1126-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb82319e-a676-4d80-b3e6-95f29d9266b3	5afac6e7-55d3-49a2-89e4-6509ed424a83	6	70064152	70064152	A	C	SNP	BAI3	ENST00000370598	human	ensembl	74_37	+1	known	silent	c.3487	p.R1163	1.000	NULL	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_CUB_dom,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI3	HGNC	ENSG00000135298				120	1	0.826446	15	29	65.9091
TAF1L	0	genome.wustl.edu	37	9	32631710	32631710	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4294-01A-01D-1126-08	TCGA-BR-4294-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb82319e-a676-4d80-b3e6-95f29d9266b3	5afac6e7-55d3-49a2-89e4-6509ed424a83	9	32631710	32631710	C	T	SNP	TAF1L	ENST00000242310	human	ensembl	74_37	-1	known	missense	c.3868	p.G1290R	1.000	pirsf_TAF1_animal	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728				159	0	0	79	62	43.9716
KIAA2026	0	genome.wustl.edu	37	9	5922218	5922218	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4294-01A-01D-1126-08	TCGA-BR-4294-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb82319e-a676-4d80-b3e6-95f29d9266b3	5afac6e7-55d3-49a2-89e4-6509ed424a83	9	5922218	5922218	C	T	SNP	KIAA2026	ENST00000399933	human	ensembl	74_37	-1	novel	missense	c.3778	p.A1260T	0.002	NULL	superfamily_Bromodomain	-	no_errors	KIAA2026	HGNC	ENSG00000183354				59	0	0	40	7	14.8936
AGTPBP1	0	genome.wustl.edu	37	9	88193991	88193991	+	Silent	SNP	G	G	A			TCGA-BR-4294-01A-01D-1126-08	TCGA-BR-4294-11A-01D-1126-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb82319e-a676-4d80-b3e6-95f29d9266b3	5afac6e7-55d3-49a2-89e4-6509ed424a83	9	88193991	88193991	G	A	SNP	AGTPBP1	ENST00000376109	human	ensembl	74_37	-1	known	silent	c.3222	p.S1074	1.000	pfam_Peptidase_M14	pfam_Peptidase_M14,superfamily_ARM-type_fold	-	no_errors	AGTPBP1	HGNC	ENSG00000135049				55	0	0	33	2	5.71429
MED12	0	genome.wustl.edu	37	X	70349258	70349258	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4294-01A-01D-1126-08	TCGA-BR-4294-11A-01D-1126-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb82319e-a676-4d80-b3e6-95f29d9266b3	5afac6e7-55d3-49a2-89e4-6509ed424a83	X	70349258	70349258	C	T	SNP	MED12	ENST00000333646	human	ensembl	74_37	+1	known	missense	c.3670	p.L1224F	1.000	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12_catenin-bd,pfam_Mediator_Med12	-	no_errors	MED12	HGNC	ENSG00000184634				17	0	0	1	15	93.75
SPHKAP	0	genome.wustl.edu	37	2	228886570	228886571	+	Frame_Shift_Ins	INS	-	-	CCAG			TCGA-BR-4294-01A-01D-1126-08	TCGA-BR-4294-11A-01D-1126-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb82319e-a676-4d80-b3e6-95f29d9266b3	5afac6e7-55d3-49a2-89e4-6509ed424a83	2	228886570	228886571	-	CCAG	INS	SPHKAP	ENST00000392056	human	ensembl	74_37	-1	known	frame_shift_ins	c.554_553	p.V185fs	0.962:1.000	NULL	pfam_AKAP_110_C	-	no_errors	SPHKAP	HGNC	ENSG00000153820				102	0	0	68	7	9.33333
