Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
PSMA5	0	genome.wustl.edu	37	1	109944620	109944620	+	RNA	SNP	G	G	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	1	109944620	109944620	G	A	SNP	PSMA5	ENST00000490870	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.968	-	-	-	no_errors	PSMA5	HGNC	ENSG00000143106				129	0	0	138	52	27.3684
GPR61	0	genome.wustl.edu	37	1	110085853	110085853	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	1	110085853	110085853	C	T	SNP	GPR61	ENST00000404129	human	ensembl	74_37	+1	known	missense	c.209	p.T70M	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	GPR61	HGNC	ENSG00000156097				176	0	0	168	49	22.5806
CHI3L2	0	genome.wustl.edu	37	1	111773550	111773550	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	1	111773550	111773550	A	G	SNP	CHI3L2	ENST00000369748	human	ensembl	74_37	+1	known	missense	c.257	p.N86S	0.388	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	-	no_errors	CHI3L2	HGNC	ENSG00000064886				45	0	0	31	14	31.1111
LOC101929099	0	genome.wustl.edu	37	1	117568128	117568128	+	RNA	SNP	T	T	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	1	117568128	117568128	T	C	SNP	LOC101929099	ENST00000445523	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.777	-	-	-	no_errors	RP11-27K13.3	Clone_based_vega_gene	ENSG00000236137				87	0	0	106	29	21.4815
LCE3D	0	genome.wustl.edu	37	1	152552306	152552306	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	1	152552306	152552306	C	A	SNP	LCE3D	ENST00000368787	human	ensembl	74_37	-1	known	missense	c.107	p.G36V	0.890	NULL	NULL	-	no_errors	LCE3D	HGNC	ENSG00000163202				165	0	0	206	42	16.9355
RAB13	0	genome.wustl.edu	37	1	153958684	153958684	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	1	153958684	153958684	T	G	SNP	RAB13	ENST00000368575	human	ensembl	74_37	-1	known	missense	c.29	p.K10T	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_EF_GTP-bd_dom,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB13	HGNC	ENSG00000143545				24	0	0	27	5	15.625
ASH1L	0	genome.wustl.edu	37	1	155448757	155448757	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	1	155448757	155448757	G	A	SNP	ASH1L	ENST00000368346	human	ensembl	74_37	-1	known	missense	c.3904	p.R1302W	1.000	NULL	pfam_SET_dom,pfam_BAH_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_AT_hook_DNA-bd_motif,smart_AWS,smart_SET_dom,smart_Bromodomain,smart_Znf_PHD,smart_BAH_dom,pfscan_AWS,pfscan_BAH_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Bromodomain	-	no_errors	ASH1L	HGNC	ENSG00000116539				184	0	0	203	53	20.7031
GPATCH4	0	genome.wustl.edu	37	1	156567853	156567853	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	1	156567853	156567853	T	G	SNP	GPATCH4	ENST00000438976	human	ensembl	74_37	-1	known	missense	c.322	p.N108H	0.751	NULL	pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	GPATCH4	HGNC	ENSG00000160818				173	0	0	311	21	6.3253
ENSG00000227217	0	genome.wustl.edu	37	1	157666239	157666239	+	RNA	SNP	A	A	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	1	157666239	157666239	A	C	SNP	ENSG00000227217	ENST00000453692	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-367J7.3	Clone_based_vega_gene	ENSG00000227217				16	0	0	18	6	25
SPTA1	0	genome.wustl.edu	37	1	158590112	158590112	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	1	158590112	158590112	A	T	SNP	SPTA1	ENST00000368147	human	ensembl	74_37	-1	known	missense	c.6265	p.L2089M	0.996	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554				89	0	0	107	15	12.2951
PPOX	0	genome.wustl.edu	37	1	161140706	161140706	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	1	161140706	161140706	C	A	SNP	PPOX	ENST00000352210	human	ensembl	74_37	+1	known	missense	c.1258	p.P420T	1.000	pfam_Amino_oxidase,tigrfam_Protoporphyrinogen_oxidase	pfam_Amino_oxidase,tigrfam_Protoporphyrinogen_oxidase	-	no_errors	PPOX	HGNC	ENSG00000143224				237	0	0	280	71	20.2279
OLFML2B	0	genome.wustl.edu	37	1	161967729	161967729	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	1	161967729	161967729	G	A	SNP	OLFML2B	ENST00000294794	human	ensembl	74_37	-1	known	missense	c.1360	p.P454S	0.046	NULL	pfam_Olfac-like,superfamily_NA-bd_OB-fold,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFML2B	HGNC	ENSG00000162745				162	0	0	177	45	20.2703
SPEN	0	genome.wustl.edu	37	1	16260874	16260874	+	Silent	SNP	C	C	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	1	16260874	16260874	C	A	SNP	SPEN	ENST00000375759	human	ensembl	74_37	+1	known	silent	c.8139	p.A2713	0.971	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC_like_C_dom,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526				107	0	0	152	45	22.8426
NBPF1	0	genome.wustl.edu	37	1	16914255	16914255	+	Silent	SNP	C	C	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	1	16914255	16914255	C	T	SNP	NBPF1	ENST00000430580	human	ensembl	74_37	-1	novel	silent	c.531	p.E177	0.028	NULL	pfam_NBPF_dom	-	no_errors	NBPF1	HGNC	ENSG00000219481				1239	0	0	1752	131	6.95698
BLZF1	0	genome.wustl.edu	37	1	169349731	169349731	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	1	169349731	169349731	T	A	SNP	BLZF1	ENST00000329281	human	ensembl	74_37	+1	known	missense	c.681	p.D227E	1.000	NULL	pfam_Hsk3_like	-	no_errors	BLZF1	HGNC	ENSG00000117475				105	0	0	84	40	32.2581
PRRX1	0	genome.wustl.edu	37	1	170699383	170699383	+	RNA	SNP	T	T	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	1	170699383	170699383	T	A	SNP	PRRX1	ENST00000485529	human	ensembl	74_37	+1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	PRRX1	HGNC	ENSG00000116132				256	0	0	318	45	12.3967
PAPPA2	0	genome.wustl.edu	37	1	176661333	176661333	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	1	176661333	176661333	C	T	SNP	PAPPA2	ENST00000367662	human	ensembl	74_37	+1	known	nonsense	c.2503	p.Q835*	1.000	superfamily_Fibronectin_type3	pfam_Notch_dom,pfam_Sushi_SCR_CCP,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA2	HGNC	ENSG00000116183				245	0	0	303	73	19.4149
RGS8	0	genome.wustl.edu	37	1	182641984	182641984	+	RNA	SNP	T	T	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	1	182641984	182641984	T	A	SNP	RGS8	ENST00000491420	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	RGS8	HGNC	ENSG00000135824				135	0	0	149	32	17.6796
BRINP3	0	genome.wustl.edu	37	1	190067498	190067498	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	1	190067498	190067498	A	C	SNP	BRINP3	ENST00000367462	human	ensembl	74_37	-1	known	missense	c.1951	p.F651V	0.999	NULL	pfam_MACPF,smart_MACPF	-	no_errors	BRINP3	HGNC	ENSG00000162670				240	1	0.414938	203	60	22.8137
CELA3A	0	genome.wustl.edu	37	1	22329520	22329520	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	1	22329520	22329520	C	T	SNP	CELA3A	ENST00000290122	human	ensembl	74_37	+1	known	missense	c.68	p.S23F	0.000	superfamily_Trypsin-like_Pept_dom	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	CELA3A	HGNC	ENSG00000142789				109	0	0	553	66	10.6624
LBR	0	genome.wustl.edu	37	1	225594439	225594439	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	1	225594439	225594439	G	C	SNP	LBR	ENST00000272163	human	ensembl	74_37	-1	known	missense	c.1410	p.F470L	0.779	pfam_Ergosterol_biosynth_ERG4_ERG24	pfam_Ergosterol_biosynth_ERG4_ERG24,pfam_Lamin-B_rcpt_of_tudor,pfam_DUF1295,smart_Tudor	-	no_errors	LBR	HGNC	ENSG00000143815				82	0	0	131	46	25.9887
OR2T3	0	genome.wustl.edu	37	1	248637452	248637452	+	Silent	SNP	G	G	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	1	248637452	248637452	G	A	SNP	OR2T3	ENST00000359594	human	ensembl	74_37	+1	known	silent	c.801	p.P267	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T3	HGNC	ENSG00000196539				589	0	0	868	62	6.66667
OR2T34	0	genome.wustl.edu	37	1	248737258	248737258	+	Silent	SNP	C	C	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	1	248737258	248737258	C	T	SNP	OR2T34	ENST00000328782	human	ensembl	74_37	-1	known	silent	c.801	p.R267	0.001	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T34	HGNC	ENSG00000183310				34	0	0	36	17	32.0755
CCDC28B	0	genome.wustl.edu	37	1	32670295	32670295	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	1	32670295	32670295	G	A	SNP	CCDC28B	ENST00000421922	human	ensembl	74_37	+1	putative	missense	c.622	p.E208K	0.009	NULL	NULL	-	no_errors	CCDC28B	HGNC	ENSG00000160050				167	0	0	265	51	16.1392
AGO4	0	genome.wustl.edu	37	1	36297664	36297664	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	1	36297664	36297664	A	C	SNP	AGO4	ENST00000373210	human	ensembl	74_37	+1	known	missense	c.1123	p.S375R	1.000	superfamily_PAZ_dom	pfam_Piwi,pfam_PAZ_dom,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	AGO4	HGNC	ENSG00000134698				286	1	0.348432	247	76	23.5294
B4GALT2	0	genome.wustl.edu	37	1	44450633	44450633	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	1	44450633	44450633	G	A	SNP	B4GALT2	ENST00000309519	human	ensembl	74_37	+1	known	missense	c.733	p.D245N	1.000	pfam_Galactosyl_T_C,prints_Galactosyl_T	pfam_Galactosyl_T_C,prints_Galactosyl_T	-	no_errors	B4GALT2	HGNC	ENSG00000117411				69	0	0	82	22	21.1538
AJAP1	0	genome.wustl.edu	37	1	4772679	4772679	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	1	4772679	4772679	T	G	SNP	AJAP1	ENST00000378190	human	ensembl	74_37	+1	known	missense	c.749	p.V250G	0.490	NULL	NULL	-	no_errors	AJAP1	HGNC	ENSG00000196581				159	0	0	205	50	19.6078
DNAJC11	0	genome.wustl.edu	37	1	6706032	6706032	+	Silent	SNP	C	C	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	1	6706032	6706032	C	T	SNP	DNAJC11	ENST00000377577	human	ensembl	74_37	-1	known	silent	c.711	p.V237	0.963	NULL	pfam_DnaJ-like_C11_C,pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJC11	HGNC	ENSG00000007923				150	0	0	281	81	22.3757
PER3	0	genome.wustl.edu	37	1	7848192	7848192	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	1	7848192	7848192	G	C	SNP	PER3	ENST00000361923	human	ensembl	74_37	+1	known	missense	c.478	p.D160H	0.759	smart_PAS	pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,superfamily_PAS,smart_PAS,pfscan_PAS	-	no_errors	PER3	HGNC	ENSG00000049246				207	0	0	271	51	15.8385
TMEM180	0	genome.wustl.edu	37	10	104230737	104230737	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	10	104230737	104230737	C	G	SNP	TMEM180	ENST00000238936	human	ensembl	74_37	+1	known	missense	c.567	p.F189L	1.000	superfamily_MFS_dom_general_subst_transpt	superfamily_MFS_dom_general_subst_transpt	-	no_errors	TMEM180	HGNC	ENSG00000138111				204	0	0	212	64	23.1884
TAF5	0	genome.wustl.edu	37	10	105146935	105146935	+	Silent	SNP	C	C	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	10	105146935	105146935	C	G	SNP	TAF5	ENST00000369839	human	ensembl	74_37	+1	known	silent	c.1833	p.L611	0.937	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_TFIID-su_WD40-assoc_reg,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_LisH_dimerisation,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	TAF5	HGNC	ENSG00000148835				78	0	0	78	19	19.5876
NEURL	0	genome.wustl.edu	37	10	105331460	105331460	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	10	105331460	105331460	G	C	SNP	NEURL	ENST00000369780	human	ensembl	74_37	+1	known	missense	c.530	p.R177P	0.999	smart_Neu_Z,pfscan_Neu_Z	pfam_Neu_Z,smart_Neu_Z,pfscan_Neu_Z,pfscan_Znf_RING	-	no_errors	NEURL	HGNC	ENSG00000107954				82	0	0	128	23	15.2318
ZDHHC6	0	genome.wustl.edu	37	10	114205154	114205154	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	10	114205154	114205154	T	C	SNP	ZDHHC6	ENST00000369405	human	ensembl	74_37	-1	known	missense	c.41	p.Q14R	1.000	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfam_SH3_2,superfamily_SH3_domain,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC6	HGNC	ENSG00000023041				84	0	0	136	24	15
TRUB1	0	genome.wustl.edu	37	10	116735016	116735016	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	10	116735016	116735016	C	G	SNP	TRUB1	ENST00000298746	human	ensembl	74_37	+1	known	missense	c.928	p.L310V	1.000	superfamily_PsdUridine_synth_cat_dom	pfam_PsdUridine_synth,superfamily_PsdUridine_synth_cat_dom,tigrfam_tRNA_psdUridine_synth_TruB	-	no_errors	TRUB1	HGNC	ENSG00000165832				248	0	0	210	80	27.5862
PTPRE	0	genome.wustl.edu	37	10	129868079	129868079	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	10	129868079	129868079	G	A	SNP	PTPRE	ENST00000254667	human	ensembl	74_37	+1	known	missense	c.1131	p.M377I	1.000	pirsf_Tyr_Pase_rcpt_a/e-type,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	pirsf_Tyr_Pase_rcpt_a/e-type,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRE	HGNC	ENSG00000132334				109	0	0	104	36	25.7143
MRC1	0	genome.wustl.edu	37	10	18196558	18196558	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	10	18196558	18196558	G	A	SNP	MRC1	ENST00000239761	human	ensembl	74_37	+1	known	missense	c.4009	p.A1337T	0.203	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,pfam_Ricin_B_lectin,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin,prints_AntifreezeII	-	no_errors	MRC1	HGNC	ENSG00000120586				130	0	0	146	52	26.2626
SLC39A12	0	genome.wustl.edu	37	10	18270258	18270258	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	10	18270258	18270258	G	T	SNP	SLC39A12	ENST00000377369	human	ensembl	74_37	+1	known	missense	c.942	p.R314S	0.940	NULL	pfam_ZIP	-	no_errors	SLC39A12	HGNC	ENSG00000148482				84	0	0	131	25	16.0256
ZNF37A	0	genome.wustl.edu	37	10	38407159	38407159	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	10	38407159	38407159	T	G	SNP	ZNF37A	ENST00000351773	human	ensembl	74_37	+1	known	missense	c.1080	p.C360W	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF37A	HGNC	ENSG00000075407				155	0	0	167	31	15.6566
ZNF37A	0	genome.wustl.edu	37	10	38407163	38407163	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	10	38407163	38407163	A	G	SNP	ZNF37A	ENST00000351773	human	ensembl	74_37	+1	known	missense	c.1084	p.K362E	0.088	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF37A	HGNC	ENSG00000075407				153	0	0	161	29	15.2632
DLG5	0	genome.wustl.edu	37	10	79566548	79566548	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	10	79566548	79566548	C	G	SNP	DLG5	ENST00000372391	human	ensembl	74_37	-1	known	missense	c.4935	p.K1645N	1.000	superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_PDZ,pfam_DUF622,pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,superfamily_PDZ,superfamily_SH3_domain,superfamily_DEATH-like_dom,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_CARD,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	DLG5	HGNC	ENSG00000151208				146	0	0	127	49	27.8409
MINPP1	0	genome.wustl.edu	37	10	89272968	89272968	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	10	89272968	89272968	A	T	SNP	MINPP1	ENST00000371996	human	ensembl	74_37	+1	known	missense	c.923	p.D308V	1.000	pfam_His_Pase_superF_clade-2,pirsf_Histidine_acid_Pase_euk	pfam_His_Pase_superF_clade-2,pirsf_Histidine_acid_Pase_euk	-	no_errors	MINPP1	HGNC	ENSG00000107789				113	0	0	118	45	27.6074
PPP1R3C	0	genome.wustl.edu	37	10	93389974	93389974	+	Silent	SNP	A	A	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	10	93389974	93389974	A	G	SNP	PPP1R3C	ENST00000238994	human	ensembl	74_37	-1	known	silent	c.664	p.L222	1.000	pfam_CBM_21,pirsf_Pase-1_Glycogen_target-su_met,pfscan_CBM_21	pfam_CBM_21,pirsf_Pase-1_Glycogen_target-su_met,pfscan_CBM_21	-	no_errors	PPP1R3C	HGNC	ENSG00000119938				162	0	0	154	43	21.8274
SLIT1	0	genome.wustl.edu	37	10	98806446	98806446	+	Silent	SNP	G	G	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	10	98806446	98806446	G	A	SNP	SLIT1	ENST00000266058	human	ensembl	74_37	-1	known	silent	c.1818	p.S606	0.389	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_Laminin_G,pfam_EG-like_dom,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl_sf,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT1	HGNC	ENSG00000187122				44	0	0	38	17	30.9091
DYNC2H1	0	genome.wustl.edu	37	11	103027360	103027360	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	11	103027360	103027360	A	G	SNP	DYNC2H1	ENST00000398093	human	ensembl	74_37	+1	known	missense	c.3988	p.R1330G	1.000	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240				36	0	0	53	21	28.3784
AMICA1	0	genome.wustl.edu	37	11	118071269	118071269	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	11	118071269	118071269	G	C	SNP	AMICA1	ENST00000356289	human	ensembl	74_37	-1	known	missense	c.831	p.I277M	1.000	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	AMICA1	HGNC	ENSG00000160593				78	0	0	155	16	9.35673
FOXRED1	0	genome.wustl.edu	37	11	126147540	126147540	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	11	126147540	126147540	C	T	SNP	FOXRED1	ENST00000263578	human	ensembl	74_37	+1	known	missense	c.1417	p.R473C	0.975	NULL	pfam_FAD-dep_OxRdtase	-	no_errors	FOXRED1	HGNC	ENSG00000110074				93	0	0	82	32	28.0702
KIRREL3	0	genome.wustl.edu	37	11	126396494	126396494	+	Silent	SNP	G	G	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	11	126396494	126396494	G	A	SNP	KIRREL3	ENST00000525144	human	ensembl	74_37	-1	known	silent	c.222	p.Y74	0.998	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	KIRREL3	HGNC	ENSG00000149571				29	0	0	18	6	25
EXT2	0	genome.wustl.edu	37	11	44148397	44148397	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	11	44148397	44148397	C	A	SNP	EXT2	ENST00000395673	human	ensembl	74_37	+1	known	missense	c.1070	p.A357D	1.000	pfam_Exostosin	pfam_HexNAc_Trfase_a,pfam_Exostosin	-	no_errors	EXT2	HGNC	ENSG00000151348				286	0	0	249	94	27.4052
LOC440040	0	genome.wustl.edu	37	11	49831415	49831415	+	RNA	SNP	T	T	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	11	49831415	49831415	T	G	SNP	LOC440040	ENST00000527477	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	RP11-707M1.1	Clone_based_vega_gene	ENSG00000205035				68	0	0	43	13	23.2143
RNH1	0	genome.wustl.edu	37	11	500634	500634	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	11	500634	500634	G	A	SNP	RNH1	ENST00000354420	human	ensembl	74_37	-1	known	missense	c.122	p.T41M	0.867	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_Cys-con_subtyp	-	no_errors	RNH1	HGNC	ENSG00000023191				48	0	0	44	21	32.3077
OR5M10	0	genome.wustl.edu	37	11	56345186	56345186	+	Silent	SNP	T	T	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	11	56345186	56345186	T	C	SNP	OR5M10	ENST00000526812	human	ensembl	74_37	-1	known	silent	c.12	p.P4	0.094	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5M10	HGNC	ENSG00000254834				112	0	0	74	26	26
DDB1	0	genome.wustl.edu	37	11	61097044	61097044	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	11	61097044	61097044	G	A	SNP	DDB1	ENST00000301764	human	ensembl	74_37	-1	known	missense	c.340	p.R114C	1.000	NULL	pfam_Cleavage/polyA-sp_fac_asu_C	-	no_errors	DDB1	HGNC	ENSG00000167986				21	0	0	22	11	33.3333
SLC22A25	0	genome.wustl.edu	37	11	62933697	62933697	+	Silent	SNP	A	A	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	11	62933697	62933697	A	C	SNP	SLC22A25	ENST00000306494	human	ensembl	74_37	-1	known	silent	c.1104	p.T368	0.000	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A25	HGNC	ENSG00000196600				64	0	0	48	10	17.2414
SLC22A10	0	genome.wustl.edu	37	11	63058038	63058038	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	11	63058038	63058038	A	C	SNP	SLC22A10	ENST00000332793	human	ensembl	74_37	+1	known	missense	c.401	p.K134T	0.935	pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A10	HGNC	ENSG00000184999				82	0	0	107	20	15.748
PCNXL3	0	genome.wustl.edu	37	11	65385537	65385537	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	11	65385537	65385537	C	T	SNP	PCNXL3	ENST00000355703	human	ensembl	74_37	+1	known	missense	c.704	p.T235I	0.993	NULL	pfam_Pecanex	-	no_errors	PCNXL3	HGNC	ENSG00000197136				16	0	0	13	8	38.0952
PCNXL3	0	genome.wustl.edu	37	11	65385540	65385540	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	11	65385540	65385540	C	A	SNP	PCNXL3	ENST00000355703	human	ensembl	74_37	+1	known	missense	c.707	p.P236H	1.000	NULL	pfam_Pecanex	-	no_errors	PCNXL3	HGNC	ENSG00000197136				14	0	0	15	7	31.8182
CLCF1	0	genome.wustl.edu	37	11	67132822	67132822	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	11	67132822	67132822	C	T	SNP	CLCF1	ENST00000312438	human	ensembl	74_37	-1	known	missense	c.463	p.G155S	1.000	pfam_PRF,pfam_Ciliary_neurotrophic_fac_CNTF,superfamily_4_helix_cytokine-like_core	pfam_PRF,pfam_Ciliary_neurotrophic_fac_CNTF,superfamily_4_helix_cytokine-like_core	-	no_errors	CLCF1	HGNC	ENSG00000175505				25	0	0	22	17	43.5897
OR10A2	0	genome.wustl.edu	37	11	6891165	6891165	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	11	6891165	6891165	C	G	SNP	OR10A2	ENST00000307322	human	ensembl	74_37	+1	known	missense	c.180	p.F60L	0.912	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10A2	HGNC	ENSG00000170790				230	0	0	225	63	21.875
ME3	0	genome.wustl.edu	37	11	86158244	86158244	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	11	86158244	86158244	C	T	SNP	ME3	ENST00000359636	human	ensembl	74_37	-1	known	missense	c.1243	p.A415T	1.000	pfam_Malic_NAD-bd,smart_Malic_NAD-bd	pfam_Malic_NAD-bd,pfam_Malic_N,smart_Malic_NAD-bd,prints_Malic_OxRdtase	-	no_errors	ME3	HGNC	ENSG00000151376				86	0	0	104	26	20
TYR	0	genome.wustl.edu	37	11	88911583	88911583	+	Silent	SNP	G	G	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	11	88911583	88911583	G	A	SNP	TYR	ENST00000263321	human	ensembl	74_37	+1	known	silent	c.462	p.G154	0.968	superfamily_Unchr_di-copper_centre	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre,prints_Tyrosinase	-	no_errors	TYR	HGNC	ENSG00000077498				260	1	0.383142	282	55	16.3205
DDX54	0	genome.wustl.edu	37	12	113617046	113617046	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	12	113617046	113617046	C	T	SNP	DDX54	ENST00000314045	human	ensembl	74_37	-1	known	missense	c.466	p.E156K	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_DBP10CT,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX54	HGNC	ENSG00000123064				44	0	0	55	18	24.6575
KIAA1467	0	genome.wustl.edu	37	12	13221366	13221366	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	12	13221366	13221366	T	G	SNP	KIAA1467	ENST00000197268	human	ensembl	74_37	+1	known	missense	c.1271	p.L424R	0.299	NULL	superfamily_Quinonprotein_ADH-like_supfam	-	no_errors	KIAA1467	HGNC	ENSG00000084444				216	2	0.917431	203	68	25.0923
ZNF268	0	genome.wustl.edu	37	12	133780428	133780428	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	12	133780428	133780428	C	A	SNP	ZNF268	ENST00000228289	human	ensembl	74_37	+1	known	missense	c.2156	p.T719K	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF268	HGNC	ENSG00000090612				10	0	0	7	6	46.1538
ABCC9	0	genome.wustl.edu	37	12	21962818	21962818	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	12	21962818	21962818	T	A	SNP	ABCC9	ENST00000261200	human	ensembl	74_37	-1	known	missense	c.4283	p.K1428M	1.000	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_Sulphorea_rcpt,prints_Sulphonylurea_rcpt-2	-	no_errors	ABCC9	HGNC	ENSG00000069431				218	0	0	165	53	24.3119
ABCC9	0	genome.wustl.edu	37	12	21970208	21970208	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	12	21970208	21970208	A	T	SNP	ABCC9	ENST00000261200	human	ensembl	74_37	-1	known	missense	c.3805	p.L1269M	1.000	superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_Sulphorea_rcpt,prints_Sulphonylurea_rcpt-2	-	no_errors	ABCC9	HGNC	ENSG00000069431				175	0	0	184	51	21.7021
LINC00477	0	genome.wustl.edu	37	12	24737049	24737049	+	RNA	SNP	A	A	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	12	24737049	24737049	A	G	SNP	LINC00477	ENST00000483544	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.439	-	-	-	no_errors	LINC00477	HGNC	ENSG00000197503				203	1	0.490196	211	13	5.80357
CACNA1C	0	genome.wustl.edu	37	12	2558191	2558191	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	12	2558191	2558191	T	A	SNP	CACNA1C	ENST00000399634	human	ensembl	74_37	+1	known	nonsense	c.527	p.L176*	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1C	HGNC	ENSG00000151067				30	0	0	34	6	15
CPNE8	0	genome.wustl.edu	37	12	39047814	39047814	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	12	39047814	39047814	C	G	SNP	CPNE8	ENST00000331366	human	ensembl	74_37	-1	known	missense	c.1565	p.R522T	1.000	NULL	pfam_Copine,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,smart_VWF_A,pfscan_C2_dom,pfscan_VWF_A	-	no_errors	CPNE8	HGNC	ENSG00000139117				71	0	0	82	12	12.766
CNTN1	0	genome.wustl.edu	37	12	41333276	41333276	+	Silent	SNP	C	C	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	12	41333276	41333276	C	G	SNP	CNTN1	ENST00000347616	human	ensembl	74_37	+1	known	silent	c.1368	p.V456	0.993	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN1	HGNC	ENSG00000018236				72	0	0	57	24	29.6296
PDZRN4	0	genome.wustl.edu	37	12	41900462	41900462	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	12	41900462	41900462	C	T	SNP	PDZRN4	ENST00000402685	human	ensembl	74_37	+1	known	missense	c.1048	p.R350C	0.777	NULL	pfam_PDZ,superfamily_PDZ,superfamily_TRAF-like,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING	-	no_errors	PDZRN4	HGNC	ENSG00000165966				119	0	0	133	10	6.99301
SLC38A4	0	genome.wustl.edu	37	12	47172136	47172136	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	12	47172136	47172136	G	C	SNP	SLC38A4	ENST00000266579	human	ensembl	74_37	-1	known	missense	c.1009	p.P337A	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC38A4	HGNC	ENSG00000139209				87	0	0	94	21	18.2609
TMEM106C	0	genome.wustl.edu	37	12	48361948	48361948	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	12	48361948	48361948	T	A	SNP	TMEM106C	ENST00000429772	human	ensembl	74_37	+1	known	missense	c.689	p.M230K	0.066	pfam_DUF1356_TMEM106	pfam_DUF1356_TMEM106	-	no_errors	TMEM106C	HGNC	ENSG00000134291				203	0	0	367	50	11.9904
KRT72	0	genome.wustl.edu	37	12	52981470	52981470	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	12	52981470	52981470	C	T	SNP	KRT72	ENST00000293745	human	ensembl	74_37	-1	known	missense	c.1255	p.A419T	1.000	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT72	HGNC	ENSG00000170486				129	0	0	88	57	39.3103
KRT18	0	genome.wustl.edu	37	12	53346603	53346603	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	12	53346603	53346603	G	T	SNP	KRT18	ENST00000388835	human	ensembl	74_37	+1	known	missense	c.1270	p.D424Y	1.000	NULL	pfam_IF,prints_Keratin_I	-	no_errors	KRT18	HGNC	ENSG00000111057				62	0	0	68	7	9.33333
SCARNA10	0	genome.wustl.edu	37	12	6619420	6619420	+	RNA	SNP	A	A	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	12	6619420	6619420	A	C	SNP	SCARNA10	ENST00000459255	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	SCARNA10	HGNC	ENSG00000239002				220	0	0	201	126	38.5321
CCER1	0	genome.wustl.edu	37	12	91348107	91348107	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	12	91348107	91348107	C	T	SNP	CCER1	ENST00000358859	human	ensembl	74_37	-1	known	missense	c.413	p.G138D	0.055	NULL	NULL	-	no_errors	CCER1	HGNC	ENSG00000197651				34	0	0	45	15	25
WNK1	0	genome.wustl.edu	37	12	994221	994221	+	Silent	SNP	A	A	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	12	994221	994221	A	G	SNP	WNK1	ENST00000530271	human	ensembl	74_37	+1	known	silent	c.5745	p.T1915	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK1	HGNC	ENSG00000060237				218	0	0	278	28	9.15033
MYO16	0	genome.wustl.edu	37	13	109753233	109753233	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	13	109753233	109753233	C	G	SNP	MYO16	ENST00000356711	human	ensembl	74_37	+1	known	missense	c.3370	p.Q1124E	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Ankyrin_rpt,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Myosin_head_motor_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO16	HGNC	ENSG00000041515				44	0	0	45	20	30.7692
SPACA7	0	genome.wustl.edu	37	13	113030779	113030779	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	13	113030779	113030779	G	T	SNP	SPACA7	ENST00000283550	human	ensembl	74_37	+1	known	missense	c.80	p.R27I	0.000	NULL	NULL	-	no_errors	SPACA7	HGNC	ENSG00000153498				28	0	0	40	7	14.8936
MTUS2	0	genome.wustl.edu	37	13	29600629	29600629	+	Silent	SNP	C	C	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	13	29600629	29600629	C	A	SNP	MTUS2	ENST00000431530	human	ensembl	74_37	+1	known	silent	c.1824	p.P608	0.998	NULL	NULL	-	no_errors	MTUS2	HGNC	ENSG00000132938				72	0	0	66	8	10.8108
STARD13	0	genome.wustl.edu	37	13	33700296	33700296	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	13	33700296	33700296	G	C	SNP	STARD13	ENST00000336934	human	ensembl	74_37	-1	known	missense	c.2004	p.H668Q	0.981	pfscan_RhoGAP_dom	pfam_START_lipid-bd_dom,pfam_RhoGAP_dom,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,superfamily_SAM/pointed,smart_RhoGAP_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom,pfscan_RhoGAP_dom	-	no_errors	STARD13	HGNC	ENSG00000133121				196	0	0	176	109	38.2456
ZC3H13	0	genome.wustl.edu	37	13	46542897	46542897	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	13	46542897	46542897	C	T	SNP	ZC3H13	ENST00000242848	human	ensembl	74_37	-1	known	missense	c.3782	p.R1261Q	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H13	HGNC	ENSG00000123200				238	0	0	273	67	19.7059
LOC101927016	0	genome.wustl.edu	37	13	64321072	64321072	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	13	64321072	64321072	G	A	SNP	LOC101927016	ENST00000453638	human	ensembl	74_37	+1	known	missense	c.139	p.G47S	0.818	NULL	NULL	-	no_errors	AL445989.1	Clone_based_ensembl_gene	ENSG00000226974				43	0	0	52	12	18.75
LMO7	0	genome.wustl.edu	37	13	76417012	76417012	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	13	76417012	76417012	A	G	SNP	LMO7	ENST00000357063	human	ensembl	74_37	+1	known	missense	c.4213	p.K1405E	0.274	NULL	pfam_CH-domain,pfam_PDZ,superfamily_CH-domain,superfamily_PDZ,smart_CH-domain,smart_PDZ,pfscan_CH-domain,pfscan_PDZ,prints_SM22_calponin	-	no_errors	LMO7	HGNC	ENSG00000136153				186	0	0	160	77	32.4895
RNF219	0	genome.wustl.edu	37	13	79190393	79190393	+	Silent	SNP	C	C	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	13	79190393	79190393	C	T	SNP	RNF219	ENST00000282003	human	ensembl	74_37	-1	known	silent	c.1503	p.E501	1.000	NULL	pfscan_Znf_RING	-	no_errors	RNF219	HGNC	ENSG00000152193				125	0	0	166	11	6.21469
ABCC4	0	genome.wustl.edu	37	13	95861791	95861791	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	13	95861791	95861791	G	T	SNP	ABCC4	ENST00000376887	human	ensembl	74_37	-1	known	missense	c.682	p.L228I	0.792	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom,prints_CysFib_conduc_TM	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_CysFib_conduc_TM	-	no_errors	ABCC4	HGNC	ENSG00000125257				77	0	0	112	14	11.1111
TOX4	0	genome.wustl.edu	37	14	21960502	21960502	+	Silent	SNP	A	A	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	14	21960502	21960502	A	C	SNP	TOX4	ENST00000262709	human	ensembl	74_37	+1	known	silent	c.858	p.A286	0.819	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	TOX4	HGNC	ENSG00000092203				190	0	0	178	91	33.829
OR4E2	0	genome.wustl.edu	37	14	22133415	22133415	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	14	22133415	22133415	C	T	SNP	OR4E2	ENST00000408935	human	ensembl	74_37	+1	known	missense	c.119	p.S40L	0.208	pfam_7TM_GPCR_olfarory/Srsx,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4E2	HGNC	ENSG00000221977				303	0	0	347	104	23.0599
EIF2S1	0	genome.wustl.edu	37	14	67831719	67831719	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	14	67831719	67831719	G	C	SNP	EIF2S1	ENST00000256383	human	ensembl	74_37	+1	known	missense	c.235	p.E79Q	1.000	pfam_Rbsml_prot_S1_RNA-bd_dom,superfamily_NA-bd_OB-fold,smart_RNA-binding_domain_S1,pfscan_Rbsml_prot_S1_RNA-bd_dom	pfam_TIF_2_asu,pfam_Rbsml_prot_S1_RNA-bd_dom,superfamily_TIF2_asu_C,superfamily_TIF2_asu_middle,superfamily_NA-bd_OB-fold,smart_RNA-binding_domain_S1,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	EIF2S1	HGNC	ENSG00000134001				141	0	0	109	26	19.2593
PCNX	0	genome.wustl.edu	37	14	71495432	71495432	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	14	71495432	71495432	T	A	SNP	PCNX	ENST00000304743	human	ensembl	74_37	+1	known	missense	c.3482	p.L1161H	1.000	NULL	pfam_Pecanex	-	no_errors	PCNX	HGNC	ENSG00000100731				90	0	0	66	13	16.4557
UNC79	0	genome.wustl.edu	37	14	94060180	94060180	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	14	94060180	94060180	G	A	SNP	UNC79	ENST00000553484	human	ensembl	74_37	+1	known	missense	c.3187	p.A1063T	1.000	superfamily_ARM-type_fold	superfamily_P-loop_NTPase,superfamily_ARM-type_fold	-	no_errors	UNC79	HGNC	ENSG00000133958				128	0	0	106	37	25.8741
GABRB3	0	genome.wustl.edu	37	15	26793220	26793220	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	15	26793220	26793220	A	T	SNP	GABRB3	ENST00000299267	human	ensembl	74_37	-1	known	missense	c.1142	p.V381D	0.997	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAb_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRB3	HGNC	ENSG00000166206				205	0	0	200	53	20.9486
RYR3	0	genome.wustl.edu	37	15	34049680	34049680	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	15	34049680	34049680	T	C	SNP	RYR3	ENST00000389232	human	ensembl	74_37	+1	known	missense	c.8588	p.L2863P	1.000	superfamily_ARM-type_fold	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838				18	0	0	5	9	64.2857
SEMA6D	0	genome.wustl.edu	37	15	48062707	48062707	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	15	48062707	48062707	A	G	SNP	SEMA6D	ENST00000355997	human	ensembl	74_37	+1	known	missense	c.1757	p.K586R	1.000	NULL	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom	-	no_errors	SEMA6D	HGNC	ENSG00000137872				162	0	0	149	46	23.5897
CCDC33	0	genome.wustl.edu	37	15	74610955	74610955	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	15	74610955	74610955	C	G	SNP	CCDC33	ENST00000268082	human	ensembl	74_37	+1	known	missense	c.25	p.P9A	0.721	NULL	NULL	-	no_errors	CCDC33	HGNC	ENSG00000140481				34	0	0	26	8	23.5294
KIAA1199	0	genome.wustl.edu	37	15	81176529	81176529	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	15	81176529	81176529	A	G	SNP	KIAA1199	ENST00000220244	human	ensembl	74_37	+1	known	missense	c.631	p.R211G	0.114	NULL	pfam_G8_domain,superfamily_Pectin_lyase_fold/virulence	-	no_errors	KIAA1199	HGNC	ENSG00000103888				190	0	0	122	105	46.2555
CLEC16A	0	genome.wustl.edu	37	16	11114066	11114066	+	Silent	SNP	C	C	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	16	11114066	11114066	C	T	SNP	CLEC16A	ENST00000409790	human	ensembl	74_37	+1	known	silent	c.1320	p.I440	1.000	NULL	pfam_Uncharacterised_FPL	-	no_errors	CLEC16A	HGNC	ENSG00000038532				45	0	0	140	18	11.3924
ABCA3	0	genome.wustl.edu	37	16	2347452	2347452	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	16	2347452	2347452	C	T	SNP	ABCA3	ENST00000301732	human	ensembl	74_37	-1	known	missense	c.2141	p.R714H	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA3	HGNC	ENSG00000167972				173	0	0	132	108	45
TAOK2	0	genome.wustl.edu	37	16	29992927	29992927	+	Silent	SNP	T	T	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	16	29992927	29992927	T	C	SNP	TAOK2	ENST00000416441	human	ensembl	74_37	+1	known	silent	c.82	p.L28	0.002	NULL	superfamily_Kinase-like_dom	-	no_errors	TAOK2	HGNC	ENSG00000149930				29	0	0	52	4	7.14286
DNAH9	0	genome.wustl.edu	37	17	11684396	11684396	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	17	11684396	11684396	C	G	SNP	DNAH9	ENST00000262442	human	ensembl	74_37	+1	known	missense	c.7623	p.I2541M	0.999	superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174				53	0	0	50	4	7.40741
NCOR1	0	genome.wustl.edu	37	17	16068476	16068476	+	Splice_Site	SNP	C	C	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	17	16068476	16068476	C	A	SNP	NCOR1	ENST00000268712	human	ensembl	74_37	-1	known	splice_site	c.436-1	e4-1	1.000	-	-	-	no_errors	NCOR1	HGNC	ENSG00000141027				188	0	0	217	17	7.26496
ENSG00000273018	0	genome.wustl.edu	37	17	18430987	18430987	+	RNA	SNP	G	G	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	17	18430987	18430987	G	A	SNP	ENSG00000273018	ENST00000608313	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CTD-2303H24.2	Clone_based_vega_gene	ENSG00000273018				74	0	0	84	28	25
C17orf97	0	genome.wustl.edu	37	17	263442	263442	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	17	263442	263442	G	A	SNP	C17orf97	ENST00000360127	human	ensembl	74_37	+1	known	missense	c.808	p.E270K	0.000	NULL	NULL	-	no_errors	C17orf97	HGNC	ENSG00000187624				47	0	0	50	9	15.2542
PHF12	0	genome.wustl.edu	37	17	27233875	27233875	+	Silent	SNP	G	G	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	17	27233875	27233875	G	A	SNP	PHF12	ENST00000332830	human	ensembl	74_37	-1	known	silent	c.2679	p.I893	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,superfamily_SMAD_FHA_domain,smart_Znf_PHD,pfscan_FHA_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF12	HGNC	ENSG00000109118				148	0	0	126	39	23.6364
ADAP2	0	genome.wustl.edu	37	17	29281541	29281541	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	17	29281541	29281541	G	C	SNP	ADAP2	ENST00000330889	human	ensembl	74_37	+1	known	missense	c.850	p.E284Q	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_ArfGAP,pfam_Pleckstrin_homology,smart_ArfGAP,smart_Pleckstrin_homology,prints_ArfGAP,pfscan_Pleckstrin_homology,pfscan_ArfGAP	-	no_errors	ADAP2	HGNC	ENSG00000184060				257	0	0	316	83	20.802
NF1	0	genome.wustl.edu	37	17	29657378	29657378	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	17	29657378	29657378	T	G	SNP	NF1	ENST00000358273	human	ensembl	74_37	+1	known	missense	c.5674	p.L1892V	1.000	superfamily_ARM-type_fold	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	-	no_errors	NF1	HGNC	ENSG00000196712				145	0	0	102	77	43.0168
LIG3	0	genome.wustl.edu	37	17	33331399	33331399	+	Silent	SNP	G	G	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	17	33331399	33331399	G	A	SNP	LIG3	ENST00000378526	human	ensembl	74_37	+1	known	silent	c.2904	p.Q968	1.000	superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	pfam_DNA_ligase_ATP-dep_cent,pfam_DNA_ligase_ATP-dep_N,pfam_Znf_PARP,pfam_DNA_ligase_ATP-dep_C,superfamily_NA-bd_OB-fold,superfamily_BRCT_dom,superfamily_DNA_ligase_ATP-dep_N,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_Znf_PARP,pfscan_DNA_ligase_ATP-dep_cent,tigrfam_DNA_ligase_ATP-dep	-	no_errors	LIG3	HGNC	ENSG00000005156				105	0	0	65	65	50
CCL18	0	genome.wustl.edu	37	17	34391748	34391748	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	17	34391748	34391748	G	T	SNP	CCL18	ENST00000004921	human	ensembl	74_37	+1	known	missense	c.46	p.A16S	0.000	superfamily_Chemokine_IL8-like_dom	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	-	no_errors	CCL18	HGNC	ENSG00000006074				152	0	0	183	56	23.431
MED1	0	genome.wustl.edu	37	17	37564295	37564295	+	Silent	SNP	G	G	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	17	37564295	37564295	G	A	SNP	MED1	ENST00000300651	human	ensembl	74_37	-1	known	silent	c.4179	p.I1393	1.000	NULL	pfam_Mediator_Med1_met/fun	-	no_errors	MED1	HGNC	ENSG00000125686				132	1	0.75188	413	44	9.62801
PGAP3	0	genome.wustl.edu	37	17	37830295	37830295	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	17	37830295	37830295	A	G	SNP	PGAP3	ENST00000300658	human	ensembl	74_37	-1	known	missense	c.508	p.F170L	1.000	pfam_Per1	pfam_Per1	-	no_errors	PGAP3	HGNC	ENSG00000161395				49	0	0	615	44	6.67678
FMNL1	0	genome.wustl.edu	37	17	43309736	43309736	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	17	43309736	43309736	G	T	SNP	FMNL1	ENST00000328118	human	ensembl	74_37	+1	known	missense	c.216	p.E72D	1.000	pfam_GTPase-bd,superfamily_ARM-type_fold	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FMNL1	HGNC	ENSG00000184922				60	0	0	212	14	6.19469
MAPT	0	genome.wustl.edu	37	17	44061042	44061042	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	17	44061042	44061042	G	A	SNP	MAPT	ENST00000344290	human	ensembl	74_37	+1	known	missense	c.872	p.R291Q	0.000	NULL	pfam_MAP_tubulin-bd_rpt,prints_Tau	-	no_errors	MAPT	HGNC	ENSG00000186868				97	0	0	60	88	59.4595
MPO	0	genome.wustl.edu	37	17	56350797	56350797	+	Silent	SNP	G	G	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	17	56350797	56350797	G	A	SNP	MPO	ENST00000340482	human	ensembl	74_37	-1	known	silent	c.1695	p.A565	0.035	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	MPO	HGNC	ENSG00000005381				197	0	0	250	58	18.8312
ABCA8	0	genome.wustl.edu	37	17	66920887	66920887	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	17	66920887	66920887	G	A	SNP	ABCA8	ENST00000430352	human	ensembl	74_37	-1	known	missense	c.1397	p.S466F	0.998	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA8	HGNC	ENSG00000141338				177	1	0.561798	169	35	17.1569
TP53	0	genome.wustl.edu	37	17	7577538	7577538	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	17	7577538	7577538	C	T	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.743	p.R248Q	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				77	0	0	41	79	65.8333
PIAS2	0	genome.wustl.edu	37	18	44407934	44407934	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	18	44407934	44407934	C	T	SNP	PIAS2	ENST00000585916	human	ensembl	74_37	-1	known	missense	c.1496	p.S499N	1.000	NULL	pfam_Znf_MIZ,smart_SAP_dom,pfscan_Znf_MIZ,pfscan_SAP_dom	-	no_errors	PIAS2	HGNC	ENSG00000078043				179	0	0	138	31	18.3432
PQLC1	0	genome.wustl.edu	37	18	77679186	77679186	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	18	77679186	77679186	C	G	SNP	PQLC1	ENST00000397778	human	ensembl	74_37	-1	known	missense	c.606	p.M202I	1.000	smart_CTNS	smart_CTNS	-	no_errors	PQLC1	HGNC	ENSG00000122490				53	0	0	49	20	28.9855
CACNA1A	0	genome.wustl.edu	37	19	13346476	13346476	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	19	13346476	13346476	C	G	SNP	CACNA1A	ENST00000360228	human	ensembl	74_37	-1	known	missense	c.5019	p.Q1673H	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_P/Q_a1su	-	no_errors	CACNA1A	HGNC	ENSG00000141837				81	0	0	93	9	8.82353
SMG9	0	genome.wustl.edu	37	19	44237015	44237015	+	Silent	SNP	C	C	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	19	44237015	44237015	C	T	SNP	SMG9	ENST00000270066	human	ensembl	74_37	-1	known	silent	c.1479	p.K493	1.000	NULL	pfam_Smg8/Smg9,superfamily_P-loop_NTPase	-	no_errors	SMG9	HGNC	ENSG00000105771				81	0	0	99	31	23.8462
CEACAM18	0	genome.wustl.edu	37	19	51986375	51986375	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	19	51986375	51986375	T	G	SNP	CEACAM18	ENST00000451626	human	ensembl	74_37	+1	known	missense	c.961	p.F321V	0.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	CEACAM18	HGNC	ENSG00000213822				249	0	0	256	80	23.8095
EMR4P	0	genome.wustl.edu	37	19	6977303	6977303	+	RNA	SNP	G	G	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	19	6977303	6977303	G	C	SNP	EMR4P	ENST00000600751	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.020	-	-	-	no_errors	EMR4P	HGNC	ENSG00000268758				104	0	0	107	21	16.4062
OR2Z1	0	genome.wustl.edu	37	19	8841802	8841802	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	19	8841802	8841802	C	T	SNP	OR2Z1	ENST00000324060	human	ensembl	74_37	+1	known	missense	c.412	p.R138C	0.539	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2Z1	HGNC	ENSG00000181733				148	0	0	84	98	53.8462
MUC16	0	genome.wustl.edu	37	19	9076652	9076652	+	Silent	SNP	A	A	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	19	9076652	9076652	A	G	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	silent	c.10794	p.T3598	0.008	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				113	1	0.877193	129	48	27.1186
ZEB2	0	genome.wustl.edu	37	2	145157322	145157322	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	2	145157322	145157322	A	C	SNP	ZEB2	ENST00000303660	human	ensembl	74_37	-1	known	missense	c.1432	p.C478G	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZEB2	HGNC	ENSG00000169554				172	0	0	134	84	38.5321
LY75	0	genome.wustl.edu	37	2	160708776	160708776	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	2	160708776	160708776	T	G	SNP	LY75	ENST00000554112	human	ensembl	74_37	-1	known	missense	c.2819	p.K940T	1.000	NULL	pfam_C-type_lectin,pfam_FN_type2_col-bd,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin	-	no_errors	LY75	HGNC	ENSG00000054219				101	0	0	135	30	18.1818
DPP4	0	genome.wustl.edu	37	2	162894905	162894905	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	2	162894905	162894905	C	T	SNP	DPP4	ENST00000360534	human	ensembl	74_37	-1	known	missense	c.520	p.V174I	0.984	pfam_Peptidase_S9B	pfam_Peptidase_S9B,pfam_Peptidase_S9	-	no_errors	DPP4	HGNC	ENSG00000197635				36	0	0	40	3	6.97674
XIRP2	0	genome.wustl.edu	37	2	168096364	168096364	+	Splice_Site	SNP	G	G	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	2	168096364	168096364	G	T	SNP	XIRP2	ENST00000295237	human	ensembl	74_37	+1	known	splice_site	c.859-1	e5-1	1.000	-	-	-	no_errors	XIRP2	HGNC	ENSG00000163092				63	0	0	86	12	12.2449
XIRP2	0	genome.wustl.edu	37	2	168105231	168105231	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	2	168105231	168105231	A	C	SNP	XIRP2	ENST00000295237	human	ensembl	74_37	+1	known	missense	c.7329	p.K2443N	0.000	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP2	HGNC	ENSG00000163092				147	0	0	188	45	19.3133
DHRS9	0	genome.wustl.edu	37	2	169938295	169938295	+	Silent	SNP	T	T	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	2	169938295	169938295	T	C	SNP	DHRS9	ENST00000432060	human	ensembl	74_37	+1	known	silent	c.384	p.A128	0.969	pfam_DH_sc/Rdtase_SDR	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	DHRS9	HGNC	ENSG00000073737				126	0	0	168	15	8.19672
TTN	0	genome.wustl.edu	37	2	179403391	179403391	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	2	179403391	179403391	G	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.91461	p.D30487E	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				344	0	0	354	83	18.9931
TTN	0	genome.wustl.edu	37	2	179435132	179435132	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	2	179435132	179435132	C	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.68023	p.E22675Q	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				56	0	0	50	17	25.3731
TTN	0	genome.wustl.edu	37	2	179578671	179578671	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	2	179578671	179578671	T	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.22982	p.Q7661P	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				61	0	0	62	17	21.519
ZNF804A	0	genome.wustl.edu	37	2	185800895	185800895	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	2	185800895	185800895	C	A	SNP	ZNF804A	ENST00000302277	human	ensembl	74_37	+1	known	missense	c.772	p.H258N	1.000	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804A	HGNC	ENSG00000170396				190	0	0	219	42	16.092
CRYGD	0	genome.wustl.edu	37	2	208989037	208989037	+	Silent	SNP	A	A	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	2	208989037	208989037	A	G	SNP	CRYGD	ENST00000264376	human	ensembl	74_37	-1	known	silent	c.51	p.Y17	0.980	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYGD	HGNC	ENSG00000118231				14	0	0	33	5	13.1579
BARD1	0	genome.wustl.edu	37	2	215593709	215593709	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	2	215593709	215593709	G	A	SNP	BARD1	ENST00000449967	human	ensembl	74_37	-1	known	missense	c.1589	p.A530V	0.998	superfamily_BRCT_dom	pfam_Ankyrin_rpt,pfam_BRCT_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_BRCT_dom,smart_Ankyrin_rpt,smart_BRCT_dom,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BRCT_dom	-	no_errors	BARD1	HGNC	ENSG00000138376				53	0	0	52	27	34.1772
PAX3	0	genome.wustl.edu	37	2	223066852	223066852	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	2	223066852	223066852	C	T	SNP	PAX3	ENST00000392069	human	ensembl	74_37	-1	known	missense	c.1231	p.A411T	1.000	NULL	pfam_Paired_dom,pfam_Pax7,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Paired_dom,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX3	HGNC	ENSG00000135903				26	0	0	25	7	21.875
PID1	0	genome.wustl.edu	37	2	229890734	229890734	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	2	229890734	229890734	T	C	SNP	PID1	ENST00000354069	human	ensembl	74_37	-1	known	missense	c.367	p.T123A	0.997	smart_PTB/PI_dom	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	-	no_errors	PID1	HGNC	ENSG00000153823				118	0	0	112	12	9.67742
RBM44	0	genome.wustl.edu	37	2	238725997	238725997	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	2	238725997	238725997	T	A	SNP	RBM44	ENST00000316997	human	ensembl	74_37	+1	known	missense	c.438	p.F146L	0.962	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM44	HGNC	ENSG00000177483				22	0	0	21	6	22.2222
PER2	0	genome.wustl.edu	37	2	239176732	239176732	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	2	239176732	239176732	A	C	SNP	PER2	ENST00000254657	human	ensembl	74_37	-1	known	missense	c.932	p.L311R	1.000	NULL	pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,superfamily_PAS,smart_PAS,pfscan_PAS	-	no_errors	PER2	HGNC	ENSG00000132326				53	0	0	51	8	13.5593
LOC100505716	0	genome.wustl.edu	37	2	28531502	28531502	+	RNA	SNP	C	C	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	2	28531502	28531502	C	T	SNP	LOC100505716	ENST00000418963	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.073	-	-	-	no_errors	AC093690.1	Clone_based_vega_gene	ENSG00000223522				11	0	0	13	14	51.8519
LHCGR	0	genome.wustl.edu	37	2	48925758	48925758	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	2	48925758	48925758	T	C	SNP	LHCGR	ENST00000294954	human	ensembl	74_37	-1	known	missense	c.862	p.K288E	0.601	NULL	pfam_GPCR_Rhodpsn,prints_LSH_rcpt,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn,prints_TSH_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	LHCGR	HGNC	ENSG00000138039				116	1	0.854701	110	43	28.1046
REG1A	0	genome.wustl.edu	37	2	79349196	79349196	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	2	79349196	79349196	A	C	SNP	REG1A	ENST00000233735	human	ensembl	74_37	+1	known	missense	c.266	p.K89T	0.406	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	REG1A	HGNC	ENSG00000115386				123	0	0	109	27	19.8529
KDM3A	0	genome.wustl.edu	37	2	86669284	86669284	+	Silent	SNP	C	C	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	2	86669284	86669284	C	T	SNP	KDM3A	ENST00000312912	human	ensembl	74_37	+1	known	silent	c.114	p.V38	0.998	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM3A	HGNC	ENSG00000115548				91	0	0	71	23	24.4681
SYNDIG1	0	genome.wustl.edu	37	20	24523880	24523880	+	Silent	SNP	G	G	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	20	24523880	24523880	G	A	SNP	SYNDIG1	ENST00000376862	human	ensembl	74_37	+1	known	silent	c.147	p.Q49	0.998	NULL	pfam_CD225/Dispanin_fam	-	no_errors	SYNDIG1	HGNC	ENSG00000101463				115	0	0	164	11	6.28571
NCOR1P1	0	genome.wustl.edu	37	20	26084094	26084094	+	RNA	SNP	T	T	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	20	26084094	26084094	T	C	SNP	NCOR1P1	ENST00000478176	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.667	-	-	-	no_errors	NCOR1P1	HGNC	ENSG00000240108				29	0	0	40	10	20
TMC2	0	genome.wustl.edu	37	20	2621798	2621798	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	20	2621798	2621798	C	T	SNP	TMC2	ENST00000358864	human	ensembl	74_37	+1	known	missense	c.2522	p.A841V	0.981	NULL	pfam_TMC	-	no_errors	TMC2	HGNC	ENSG00000149488				212	0	0	201	116	36.5931
RALGAPB	0	genome.wustl.edu	37	20	37121694	37121694	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	20	37121694	37121694	C	G	SNP	RALGAPB	ENST00000262879	human	ensembl	74_37	+1	known	missense	c.308	p.S103C	1.000	NULL	superfamily_ARM-type_fold,pfscan_Rap_GAP_dom	-	no_errors	RALGAPB	HGNC	ENSG00000170471				177	0	0	203	49	19.4444
PPP1R16B	0	genome.wustl.edu	37	20	37529251	37529251	+	Silent	SNP	G	G	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	20	37529251	37529251	G	A	SNP	PPP1R16B	ENST00000299824	human	ensembl	74_37	+1	known	silent	c.495	p.S165	0.004	superfamily_Ankyrin_rpt-contain_dom,pirsf_Pase-1_reg_su_16AB_euk,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pirsf_Pase-1_reg_su_16AB_euk,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	PPP1R16B	HGNC	ENSG00000101445				108	0	0	139	31	18.2353
PTPRT	0	genome.wustl.edu	37	20	41514542	41514542	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	20	41514542	41514542	T	C	SNP	PTPRT	ENST00000373198	human	ensembl	74_37	-1	known	missense	c.119	p.N40S	1.000	pfam_MAM_dom,superfamily_ConA-like_lec_gl_sf,smart_MAM_dom,pfscan_MAM_dom	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRT	HGNC	ENSG00000196090				78	0	0	192	16	7.69231
JPH2	0	genome.wustl.edu	37	20	42788489	42788489	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	20	42788489	42788489	C	T	SNP	JPH2	ENST00000372980	human	ensembl	74_37	-1	known	missense	c.938	p.R313H	1.000	smart_MORN,pirsf_Junctophilin	pfam_MORN,smart_MORN,pirsf_Junctophilin	-	no_errors	JPH2	HGNC	ENSG00000149596				55	0	0	38	64	62.7451
SEMG2	0	genome.wustl.edu	37	20	43850999	43850999	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	20	43850999	43850999	T	A	SNP	SEMG2	ENST00000372769	human	ensembl	74_37	+1	known	missense	c.726	p.H242Q	0.000	pfam_Semenogelin	pfam_Semenogelin	-	no_errors	SEMG2	HGNC	ENSG00000124157				217	0	0	265	216	44.9064
KCNB1	0	genome.wustl.edu	37	20	47989961	47989961	+	Silent	SNP	C	C	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	20	47989961	47989961	C	T	SNP	KCNB1	ENST00000371741	human	ensembl	74_37	-1	known	silent	c.2136	p.T712	0.000	pfam_K_chnl_volt-dep_Kv2	pfam_K_chnl_volt-dep_Kv2,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv2.1,prints_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv8	-	no_errors	KCNB1	HGNC	ENSG00000158445				55	0	0	209	22	9.52381
KCNQ2	0	genome.wustl.edu	37	20	62070073	62070073	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	20	62070073	62070073	C	T	SNP	KCNQ2	ENST00000354587	human	ensembl	74_37	-1	known	missense	c.928	p.G310S	1.000	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ankyrin-G_BS,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_KCNQ2,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ2	HGNC	ENSG00000075043				68	0	0	30	96	76.1905
PLCB4	0	genome.wustl.edu	37	20	9459579	9459579	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	20	9459579	9459579	G	A	SNP	PLCB4	ENST00000334005	human	ensembl	74_37	+1	known	missense	c.3508	p.A1170T	1.000	pirsf_PLC-beta	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_PLC-beta_CS,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,prints_Pinositol_PLipase_C,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB4	HGNC	ENSG00000101333				43	0	0	46	14	23.3333
SAMSN1	0	genome.wustl.edu	37	21	15889299	15889299	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	21	15889299	15889299	C	T	SNP	SAMSN1	ENST00000400566	human	ensembl	74_37	-1	known	missense	c.193	p.G65S	0.605	pfam_rSAM/SH3_domain-containing	pfam_rSAM/SH3_domain-containing,pfam_SAM_2,pfam_SAM_type1,pfam_SH3_2,superfamily_SAM/pointed,superfamily_SH3_domain,smart_SH3_domain,smart_SAM,pfscan_SAM	-	no_errors	SAMSN1	HGNC	ENSG00000155307				57	0	0	30	24	44.4444
DSCR9	0	genome.wustl.edu	37	21	38593929	38593929	+	RNA	SNP	C	C	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	21	38593929	38593929	C	T	SNP	DSCR9	ENST00000454482	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.047	-	-	-	no_errors	DSCR9	HGNC	ENSG00000230366				41	0	0	37	14	27.451
TIMP3	0	genome.wustl.edu	37	22	33245467	33245467	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	22	33245467	33245467	G	C	SNP	TIMP3	ENST00000266085	human	ensembl	74_37	+1	known	missense	c.150	p.K50N	1.000	pfam_Prot_inh_TIMP,superfamily_TIMP-like_OB-fold,smart_Prot_inh_TIMP,pfscan_Netrin_domain	pfam_Prot_inh_TIMP,superfamily_TIMP-like_OB-fold,smart_Prot_inh_TIMP,pfscan_Netrin_domain	-	no_errors	TIMP3	HGNC	ENSG00000100234				40	0	0	30	15	33.3333
PARP14	0	genome.wustl.edu	37	3	122422676	122422676	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	3	122422676	122422676	G	C	SNP	PARP14	ENST00000474629	human	ensembl	74_37	+1	known	missense	c.3169	p.E1057Q	0.001	pfam_Macro_dom,smart_Macro_dom,pfscan_Macro_dom	pfam_Macro_dom,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_WWE-dom,smart_Macro_dom,pfscan_Macro_dom,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP14	HGNC	ENSG00000173193				89	0	0	90	27	23.0769
ALG1L2	0	genome.wustl.edu	37	3	129817148	129817148	+	RNA	SNP	C	C	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	3	129817148	129817148	C	T	SNP	ALG1L2	ENST00000507643	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.946	-	-	-	no_errors	ALG1L2	HGNC	ENSG00000251287				63	0	0	74	11	12.9412
SLC35G2	0	genome.wustl.edu	37	3	136573735	136573735	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	3	136573735	136573735	G	T	SNP	SLC35G2	ENST00000393079	human	ensembl	74_37	+1	known	missense	c.433	p.V145F	1.000	pfam_DMT	pfam_DMT	-	no_errors	SLC35G2	HGNC	ENSG00000168917				359	1	0.277778	326	105	24.3619
XRN1	0	genome.wustl.edu	37	3	142102207	142102207	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	3	142102207	142102207	C	T	SNP	XRN1	ENST00000264951	human	ensembl	74_37	-1	known	missense	c.2551	p.D851N	1.000	pirsf_5_3_exoribonuclease_1	pfam_Put_53exo,pirsf_5_3_exoribonuclease_1	-	no_errors	XRN1	HGNC	ENSG00000114127				126	0	0	142	30	17.4419
PLCL2-AS1	0	genome.wustl.edu	37	3	17084314	17084314	+	RNA	SNP	G	G	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	3	17084314	17084314	G	A	SNP	PLCL2-AS1	ENST00000414844	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PLCL2-AS1	HGNC	ENSG00000226441				134	0	0	128	32	20
AHSG	0	genome.wustl.edu	37	3	186335007	186335007	+	Silent	SNP	A	A	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	3	186335007	186335007	A	G	SNP	AHSG	ENST00000411641	human	ensembl	74_37	+1	known	silent	c.441	p.Q147	0.000	smart_Prot_inh_cystat	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	AHSG	HGNC	ENSG00000145192				139	0	0	162	26	13.8298
SCN5A	0	genome.wustl.edu	37	3	38597190	38597190	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	3	38597190	38597190	T	G	SNP	SCN5A	ENST00000333535	human	ensembl	74_37	-1	known	missense	c.4499	p.K1500T	1.000	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,prints_Na_channel_a5su,prints_Na_channel_asu	-	no_errors	SCN5A	HGNC	ENSG00000183873				101	0	0	118	10	7.8125
SHISA5	0	genome.wustl.edu	37	3	48510489	48510489	+	RNA	SNP	G	G	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	3	48510489	48510489	G	C	SNP	SHISA5	ENST00000465449	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.233	-	-	-	no_errors	SHISA5	HGNC	ENSG00000164054				124	1	0.8	113	19	14.3939
CELSR3	0	genome.wustl.edu	37	3	48697355	48697355	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	3	48697355	48697355	G	A	SNP	CELSR3	ENST00000544264	human	ensembl	74_37	-1	known	missense	c.2713	p.R905C	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_GPCR_2_secretin-like,pfam_Laminin_G,pfam_DUF3497,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR3	HGNC	ENSG00000008300				74	0	0	95	22	18.8034
CAMKV	0	genome.wustl.edu	37	3	49897278	49897278	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	3	49897278	49897278	G	A	SNP	CAMKV	ENST00000477224	human	ensembl	74_37	-1	known	missense	c.979	p.R327W	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CAMKV	HGNC	ENSG00000164076				48	0	0	42	13	23.6364
SEMA3B	0	genome.wustl.edu	37	3	50311057	50311057	+	RNA	SNP	A	A	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	3	50311057	50311057	A	G	SNP	SEMA3B	ENST00000316347	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SEMA3B	HGNC	ENSG00000012171				97	0	0	79	29	26.8519
PXK	0	genome.wustl.edu	37	3	58376310	58376310	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	3	58376310	58376310	G	T	SNP	PXK	ENST00000356151	human	ensembl	74_37	+1	known	missense	c.390	p.E130D	0.999	pfscan_Prot_kinase_dom	pfam_Phox,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Phox,superfamily_Kinase-like_dom,smart_Phox,pfscan_Phox,pfscan_WH2_dom,pfscan_Prot_kinase_dom	-	no_errors	PXK	HGNC	ENSG00000168297				38	0	0	54	10	15.625
ROBO2	0	genome.wustl.edu	37	3	77657104	77657104	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	3	77657104	77657104	G	T	SNP	ROBO2	ENST00000461745	human	ensembl	74_37	+1	known	missense	c.3292	p.G1098C	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO2	HGNC	ENSG00000185008				51	0	0	45	16	26.2295
C4orf21	0	genome.wustl.edu	37	4	113539455	113539455	+	Silent	SNP	A	A	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	4	113539455	113539455	A	G	SNP	C4orf21	ENST00000505019	human	ensembl	74_37	-1	known	silent	c.1743	p.C581	0.001	NULL	pfam_DUF2439,pfam_Znf_GRF,superfamily_P-loop_NTPase	-	no_errors	C4orf21	HGNC	ENSG00000138658				188	0	0	140	49	25.9259
LRBA	0	genome.wustl.edu	37	4	151836777	151836777	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	4	151836777	151836777	A	C	SNP	LRBA	ENST00000357115	human	ensembl	74_37	-1	known	missense	c.997	p.F333V	1.000	superfamily_ConA-like_lec_gl_sf	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl_sf,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom	-	no_errors	LRBA	HGNC	ENSG00000198589				67	0	0	62	8	11.4286
FGB	0	genome.wustl.edu	37	4	155487704	155487704	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	4	155487704	155487704	A	G	SNP	FGB	ENST00000302068	human	ensembl	74_37	+1	known	missense	c.370	p.R124G	0.007	pfam_Fibrinogen_a/b/g_coil_dom	pfam_Fibrinogen_a/b/g_C_dom,pfam_Fibrinogen_a/b/g_coil_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	FGB	HGNC	ENSG00000171564				178	0	0	203	12	5.5814
FNIP2	0	genome.wustl.edu	37	4	159825674	159825674	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	4	159825674	159825674	A	T	SNP	FNIP2	ENST00000379346	human	ensembl	74_37	+1	known	missense	c.3392	p.Y1131F	0.976	NULL	NULL	-	no_errors	FNIP2	HGNC	ENSG00000052795				159	0	0	216	14	6.08696
FSTL5	0	genome.wustl.edu	37	4	162307171	162307171	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	4	162307171	162307171	C	T	SNP	FSTL5	ENST00000306100	human	ensembl	74_37	-1	known	missense	c.2272	p.G758S	0.938	NULL	pfam_Ig_I-set,pfam_Kazal_dom,pfam_Ig_V-set,smart_Kazal_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_EF_hand_dom,pfscan_Ig-like_dom	-	no_errors	FSTL5	HGNC	ENSG00000168843				141	0	0	119	31	20.6667
UFSP2	0	genome.wustl.edu	37	4	186336377	186336377	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	4	186336377	186336377	T	A	SNP	UFSP2	ENST00000264689	human	ensembl	74_37	-1	known	nonsense	c.616	p.K206*	0.000	NULL	pfam_Peptidase_C78_UfSP1/2	-	no_errors	UFSP2	HGNC	ENSG00000109775				92	0	0	74	26	26
PDLIM3	0	genome.wustl.edu	37	4	186423589	186423589	+	Silent	SNP	G	G	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	4	186423589	186423589	G	A	SNP	PDLIM3	ENST00000284770	human	ensembl	74_37	-1	known	silent	c.954	p.F318	0.999	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_PDZ,pfam_Znf_LIM,superfamily_PDZ,smart_PDZ,smart_ZASP,smart_Znf_LIM,pfscan_Znf_LIM,pfscan_PDZ	-	no_errors	PDLIM3	HGNC	ENSG00000154553				188	0	0	152	48	24
SLC34A2	0	genome.wustl.edu	37	4	25678198	25678198	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	4	25678198	25678198	G	C	SNP	SLC34A2	ENST00000382051	human	ensembl	74_37	+1	known	missense	c.1900	p.D634H	0.977	NULL	pfam_Na/Pi_transpt,superfamily_ABC1_TM_dom,tigrfam_Na/Pi_transpt	-	no_errors	SLC34A2	HGNC	ENSG00000157765				50	0	0	50	16	24.2424
STK32B	0	genome.wustl.edu	37	4	5468493	5468493	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	4	5468493	5468493	C	A	SNP	STK32B	ENST00000282908	human	ensembl	74_37	+1	known	missense	c.973	p.L325I	0.995	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	STK32B	HGNC	ENSG00000152953				55	0	0	48	20	29.4118
COX18	0	genome.wustl.edu	37	4	73927606	73927606	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	4	73927606	73927606	C	T	SNP	COX18	ENST00000295890	human	ensembl	74_37	-1	known	missense	c.752	p.R251H	0.998	pfam_Membrane_insert_OXA1/ALB3/YidC	pfam_Membrane_insert_OXA1/ALB3/YidC	-	no_errors	COX18	HGNC	ENSG00000163626				49	0	0	49	12	19.6721
UNC5C	0	genome.wustl.edu	37	4	96091445	96091445	+	Silent	SNP	C	C	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	4	96091445	96091445	C	T	SNP	UNC5C	ENST00000453304	human	ensembl	74_37	-1	known	silent	c.2490	p.A830	0.098	NULL	pfam_ZU5,pfam_Death_domain,pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,superfamily_DEATH-like_dom,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death_domain,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like_dom	-	no_errors	UNC5C	HGNC	ENSG00000182168				306	0	0	343	27	7.2973
DRD5	0	genome.wustl.edu	37	4	9784423	9784423	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	4	9784423	9784423	G	A	SNP	DRD5	ENST00000304374	human	ensembl	74_37	+1	known	missense	c.770	p.R257H	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Dopamine_D5_rcpt,prints_Dopamine_rcpt	-	no_errors	DRD5	HGNC	ENSG00000169676				58	0	0	35	14	28.5714
DMXL1	0	genome.wustl.edu	37	5	118484729	118484729	+	Silent	SNP	A	A	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	5	118484729	118484729	A	G	SNP	DMXL1	ENST00000539542	human	ensembl	74_37	+1	known	silent	c.3207	p.R1069	0.001	superfamily_WD40_repeat_dom	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL1	HGNC	ENSG00000172869				289	0	0	195	172	46.8665
FBN2	0	genome.wustl.edu	37	5	127607789	127607789	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	5	127607789	127607789	T	G	SNP	FBN2	ENST00000262464	human	ensembl	74_37	-1	known	missense	c.7862	p.N2621T	1.000	pirsf_FBN,pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom	pirsf_FBN,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Cadherin-like,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	FBN2	HGNC	ENSG00000138829				110	0	0	98	41	29.4964
DNAH5	0	genome.wustl.edu	37	5	13708305	13708305	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	5	13708305	13708305	A	G	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	missense	c.13265	p.I4422T	1.000	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				343	0	0	232	181	43.8257
PCDHA6	0	genome.wustl.edu	37	5	140209209	140209209	+	Silent	SNP	C	C	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	5	140209209	140209209	C	T	SNP	PCDHA6	ENST00000529310	human	ensembl	74_37	+1	known	silent	c.1533	p.H511	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA6	HGNC	ENSG00000081842				155	1	0.641026	102	92	47.4227
PCDHGA4	0	genome.wustl.edu	37	5	140734941	140734941	+	Silent	SNP	G	G	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	5	140734941	140734941	G	A	SNP	PCDHGA4	ENST00000571252	human	ensembl	74_37	+1	known	silent	c.174	p.E58	0.997	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA4	HGNC	ENSG00000262576				113	0	0	134	15	10.0671
PCDHGB3	0	genome.wustl.edu	37	5	140752271	140752271	+	Silent	SNP	A	A	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	5	140752271	140752271	A	C	SNP	PCDHGB3	ENST00000576222	human	ensembl	74_37	+1	known	silent	c.2310	p.I770	0.620	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB3	HGNC	ENSG00000262209				56	0	0	36	42	53.8462
LARS	0	genome.wustl.edu	37	5	145529216	145529216	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	5	145529216	145529216	T	C	SNP	LARS	ENST00000394434	human	ensembl	74_37	-1	known	missense	c.1472	p.K491R	1.000	pfam_aa-tRNA-synth_Ia,superfamily_Val/Leu/Ile-tRNA-synth_edit,tigrfam_Leu-tRNA-synth_Ia_arc/euk	pfam_aa-tRNA-synth_Ia,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Cys-tRNA/MSH_ligase,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Val/Leu/Ile-tRNA-synth_edit,tigrfam_Leu-tRNA-synth_Ia_arc/euk	-	no_errors	LARS	HGNC	ENSG00000133706				282	1	0.353357	171	145	45.8861
TCERG1	0	genome.wustl.edu	37	5	145859463	145859463	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	5	145859463	145859463	C	G	SNP	TCERG1	ENST00000296702	human	ensembl	74_37	+1	known	missense	c.1808	p.S603C	1.000	NULL	pfam_FF_domain,pfam_WW_dom,superfamily_FF_domain,superfamily_WW_dom,smart_WW_dom,smart_FF_domain,pfscan_WW_dom	-	no_errors	TCERG1	HGNC	ENSG00000113649				54	0	0	54	18	25
FBXL7	0	genome.wustl.edu	37	5	15936809	15936809	+	Silent	SNP	C	C	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	5	15936809	15936809	C	T	SNP	FBXL7	ENST00000504595	human	ensembl	74_37	+1	known	silent	c.990	p.S330	1.000	smart_Leu-rich_rpt_Cys-con_subtyp	pfam_Leu-rich_rpt,pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom	-	no_errors	FBXL7	HGNC	ENSG00000183580				22	0	0	20	5	20
TTC1	0	genome.wustl.edu	37	5	159478161	159478161	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	5	159478161	159478161	G	T	SNP	TTC1	ENST00000231238	human	ensembl	74_37	+1	known	missense	c.716	p.R239L	1.000	NULL	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC1	HGNC	ENSG00000113312				144	0	0	149	9	5.6962
MAML1	0	genome.wustl.edu	37	5	179193287	179193287	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	5	179193287	179193287	C	A	SNP	MAML1	ENST00000292599	human	ensembl	74_37	+1	known	missense	c.1276	p.Q426K	1.000	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML1	HGNC	ENSG00000161021				232	0	0	280	36	11.3924
BTNL9	0	genome.wustl.edu	37	5	180477150	180477150	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	5	180477150	180477150	C	T	SNP	BTNL9	ENST00000376842	human	ensembl	74_37	+1	known	missense	c.517	p.L173F	0.582	NULL	pfam_SPRY_rcpt,pfam_Ig_V-set,superfamily_ConA-like_lec_gl_sf,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Ig-like_dom,prints_Butyrophylin	-	no_errors	BTNL9	HGNC	ENSG00000165810				122	0	0	78	102	56.6667
ENSG00000181495	0	genome.wustl.edu	37	5	32789806	32789806	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	5	32789806	32789806	T	G	SNP	ENSG00000181495	ENST00000326958	human	ensembl	74_37	+1	novel	missense	c.299	p.V100G	0.000	NULL	NULL	-	no_errors	AC026703.1	Clone_based_ensembl_gene	ENSG00000181495				150	0	0	162	45	21.7391
AGXT2	0	genome.wustl.edu	37	5	34998853	34998853	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	5	34998853	34998853	T	G	SNP	AGXT2	ENST00000231420	human	ensembl	74_37	-1	known	missense	c.1516	p.T506P	0.387	superfamily_PyrdxlP-dep_Trfase	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase	-	no_errors	AGXT2	HGNC	ENSG00000113492				83	0	0	73	49	40.1639
AGXT2	0	genome.wustl.edu	37	5	35035336	35035336	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	5	35035336	35035336	A	T	SNP	AGXT2	ENST00000231420	human	ensembl	74_37	-1	known	missense	c.572	p.I191N	1.000	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase	-	no_errors	AGXT2	HGNC	ENSG00000113492				146	0	0	172	41	19.2488
IL7R	0	genome.wustl.edu	37	5	35861002	35861002	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	5	35861002	35861002	G	T	SNP	IL7R	ENST00000303115	human	ensembl	74_37	+1	known	missense	c.131	p.S44I	0.994	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3	-	no_errors	IL7R	HGNC	ENSG00000168685				221	0	0	214	91	29.8361
NIPBL	0	genome.wustl.edu	37	5	36984938	36984938	+	Silent	SNP	C	C	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	5	36984938	36984938	C	T	SNP	NIPBL	ENST00000282516	human	ensembl	74_37	+1	known	silent	c.1656	p.D552	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	NIPBL	HGNC	ENSG00000164190				342	1	0.291545	502	486	49.1903
ADCY2	0	genome.wustl.edu	37	5	7707834	7707834	+	Silent	SNP	T	T	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	5	7707834	7707834	T	C	SNP	ADCY2	ENST00000338316	human	ensembl	74_37	+1	known	silent	c.1284	p.S428	0.564	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY2	HGNC	ENSG00000078295				144	0	0	173	80	31.6206
VCAN	0	genome.wustl.edu	37	5	82816513	82816513	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	5	82816513	82816513	A	T	SNP	VCAN	ENST00000265077	human	ensembl	74_37	+1	known	missense	c.2388	p.E796D	0.947	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_EG-like_dom,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Link,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link	-	no_errors	VCAN	HGNC	ENSG00000038427				101	0	0	124	7	5.34351
SEMA5A	0	genome.wustl.edu	37	5	9066581	9066581	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	5	9066581	9066581	C	T	SNP	SEMA5A	ENST00000382496	human	ensembl	74_37	-1	known	missense	c.2251	p.E751K	1.000	NULL	pfam_Semap_dom,pfam_Thrombospondin_1_rpt,superfamily_Semap_dom,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Thrombospondin_1_rpt,pfscan_Semap_dom,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5A	HGNC	ENSG00000112902				276	1	0.361011	329	85	20.5314
LAMA4	0	genome.wustl.edu	37	6	112441542	112441542	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	6	112441542	112441542	G	A	SNP	LAMA4	ENST00000230538	human	ensembl	74_37	-1	known	missense	c.4609	p.H1537Y	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_II,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Focal_adhesion_kin_target_dom,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Laminin_G	-	no_errors	LAMA4	HGNC	ENSG00000112769				144	0	0	144	15	9.43396
AGPAT4	0	genome.wustl.edu	37	6	161653179	161653179	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	6	161653179	161653179	C	A	SNP	AGPAT4	ENST00000320285	human	ensembl	74_37	-1	known	missense	c.67	p.A23S	0.775	NULL	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase	-	no_errors	AGPAT4	HGNC	ENSG00000026652				81	0	0	76	48	38.7097
HIST1H2AD	0	genome.wustl.edu	37	6	26199112	26199112	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	6	26199112	26199112	C	G	SNP	HIST1H2AD	ENST00000341023	human	ensembl	74_37	-1	known	missense	c.360	p.K120N	1.000	superfamily_Histone-fold,smart_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AD	HGNC	ENSG00000196866				132	0	0	107	27	20.1493
ABT1	0	genome.wustl.edu	37	6	26598628	26598628	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	6	26598628	26598628	G	A	SNP	ABT1	ENST00000274849	human	ensembl	74_37	+1	known	missense	c.574	p.G192R	0.889	NULL	NULL	-	no_errors	ABT1	HGNC	ENSG00000146109				90	0	0	83	26	23.8532
OR2J1	0	genome.wustl.edu	37	6	29069010	29069010	+	Silent	SNP	T	T	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	6	29069010	29069010	T	C	SNP	OR2J1	ENST00000377171	human	ensembl	74_37	+1	known	silent	c.291	p.G97	0.040	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR2J1	HGNC	ENSG00000204702				231	0	0	198	53	21.1155
CYP21A2	0	genome.wustl.edu	37	6	32007956	32007956	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	6	32007956	32007956	G	A	SNP	CYP21A2	ENST00000418967	human	ensembl	74_37	+1	known	missense	c.913	p.V305M	0.997	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP21A2	HGNC	ENSG00000231852				294	2	0.675676	289	173	37.4459
CDC5L	0	genome.wustl.edu	37	6	44371709	44371709	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	6	44371709	44371709	C	G	SNP	CDC5L	ENST00000371477	human	ensembl	74_37	+1	known	missense	c.703	p.L235V	0.980	NULL	pfam_DUF3351,pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	CDC5L	HGNC	ENSG00000096401				165	0	0	105	112	51.6129
DEFB112	0	genome.wustl.edu	37	6	50016282	50016282	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	6	50016282	50016282	T	G	SNP	DEFB112	ENST00000322246	human	ensembl	74_37	-1	known	missense	c.83	p.K28T	0.000	NULL	NULL	-	no_errors	DEFB112	HGNC	ENSG00000180872				106	0	0	105	12	10.2564
DST	0	genome.wustl.edu	37	6	56417119	56417119	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	6	56417119	56417119	T	C	SNP	DST	ENST00000370754	human	ensembl	74_37	-1	known	missense	c.16378	p.I5460V	0.224	superfamily_ABC1_TM_dom	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	DST	HGNC	ENSG00000151914				77	0	0	89	33	27.0492
FAM135A	0	genome.wustl.edu	37	6	71185403	71185403	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	6	71185403	71185403	C	T	SNP	FAM135A	ENST00000418814	human	ensembl	74_37	+1	known	missense	c.335	p.S112F	0.993	pfam_DUF3657	pfam_DUF676_lipase-like,pfam_DUF3657,pfam_PGAP1-like,pfam_LACT/PDAT_acylTrfase	-	no_errors	FAM135A	HGNC	ENSG00000082269				62	0	0	41	29	41.4286
PLOD3	0	genome.wustl.edu	37	7	100853950	100853950	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	7	100853950	100853950	C	T	SNP	PLOD3	ENST00000223127	human	ensembl	74_37	-1	known	missense	c.1363	p.V455M	0.611	NULL	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	PLOD3	HGNC	ENSG00000106397				51	0	0	67	23	25.5556
PRKAR2B	0	genome.wustl.edu	37	7	106786820	106786820	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	7	106786820	106786820	G	T	SNP	PRKAR2B	ENST00000265717	human	ensembl	74_37	+1	known	missense	c.655	p.G219W	1.000	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pirsf_cAMP_dep_PK_reg_su,pfscan_cNMP-bd_dom	pfam_cNMP-bd_dom,pfam_cAMP_dep_PK_reg_su_I/II_a/b,superfamily_cNMP-bd-like,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,smart_cAMP_dep_PK_reg_su_I/II_a/b,smart_cNMP-bd_dom,pirsf_cAMP_dep_PK_reg_su,pfscan_cNMP-bd_dom,prints_cAMP/cGMP_kin	-	no_errors	PRKAR2B	HGNC	ENSG00000005249				119	0	0	87	50	36.4964
ENSG00000230435	0	genome.wustl.edu	37	7	11446698	11446698	+	RNA	SNP	A	A	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	7	11446698	11446698	A	C	SNP	ENSG00000230435	ENST00000425837	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.443	-	-	-	no_errors	AC004160.4	Clone_based_vega_gene	ENSG00000230435				30	0	0	23	7	23.3333
SLC35B4	0	genome.wustl.edu	37	7	133994182	133994182	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	7	133994182	133994182	T	A	SNP	SLC35B4	ENST00000378509	human	ensembl	74_37	-1	known	missense	c.127	p.I43F	1.000	pfam_UAA	pfam_UAA,pfam_Tpt_PEP_trans_dom	-	no_errors	SLC35B4	HGNC	ENSG00000205060				22	0	0	64	7	9.85915
CCDC129	0	genome.wustl.edu	37	7	31611789	31611789	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	7	31611789	31611789	A	C	SNP	CCDC129	ENST00000451887	human	ensembl	74_37	+1	known	missense	c.460	p.S154R	0.903	NULL	NULL	-	no_errors	CCDC129	HGNC	ENSG00000180347				23	0	0	21	8	27.5862
SDK1	0	genome.wustl.edu	37	7	3678640	3678640	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	7	3678640	3678640	A	G	SNP	SDK1	ENST00000404826	human	ensembl	74_37	+1	known	missense	c.463	p.I155V	0.540	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	SDK1	HGNC	ENSG00000146555				22	0	0	27	3	10
NME8	0	genome.wustl.edu	37	7	37890313	37890313	+	Silent	SNP	A	A	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	7	37890313	37890313	A	G	SNP	NME8	ENST00000199447	human	ensembl	74_37	+1	known	silent	c.174	p.E58	0.997	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	pfam_Nucleoside_diP_kinase,pfam_Thioredoxin_domain,superfamily_Nucleoside_diP_kinase,superfamily_Thioredoxin-like_fold,smart_Nucleoside_diP_kinase	-	no_errors	NME8	HGNC	ENSG00000086288				70	0	0	53	26	32.9114
NME8	0	genome.wustl.edu	37	7	37936592	37936592	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	7	37936592	37936592	G	T	SNP	NME8	ENST00000199447	human	ensembl	74_37	+1	known	missense	c.1665	p.Q555H	0.000	pfam_Nucleoside_diP_kinase,superfamily_Nucleoside_diP_kinase,smart_Nucleoside_diP_kinase	pfam_Nucleoside_diP_kinase,pfam_Thioredoxin_domain,superfamily_Nucleoside_diP_kinase,superfamily_Thioredoxin-like_fold,smart_Nucleoside_diP_kinase	-	no_errors	NME8	HGNC	ENSG00000086288				83	0	0	68	50	42.3729
HECW1	0	genome.wustl.edu	37	7	43477736	43477736	+	Silent	SNP	C	C	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	7	43477736	43477736	C	T	SNP	HECW1	ENST00000395891	human	ensembl	74_37	+1	known	silent	c.936	p.H312	0.836	superfamily_C2_dom,smart_C2_dom	pfam_HECT,pfam_WW_dom,pfam_C2_dom,superfamily_HECT,superfamily_WW_dom,superfamily_C2_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_C2_dom,pfscan_WW_dom	-	no_errors	HECW1	HGNC	ENSG00000002746				95	0	0	75	16	17.5824
TNS3	0	genome.wustl.edu	37	7	47451357	47451357	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	7	47451357	47451357	C	T	SNP	TNS3	ENST00000311160	human	ensembl	74_37	-1	known	missense	c.691	p.E231K	0.996	pfam_Tensin_phosphatase_C2-dom,superfamily_C2_dom,pfscan_Tensin_phosphatase_C2-dom	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_dom,smart_Tyr_Pase_cat,smart_SH2,smart_PTB/PI_dom,pfscan_SH2,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS3	HGNC	ENSG00000136205				28	0	0	16	7	30.4348
ZNF479	0	genome.wustl.edu	37	7	57188491	57188491	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	7	57188491	57188491	T	G	SNP	ZNF479	ENST00000331162	human	ensembl	74_37	-1	known	missense	c.631	p.K211Q	0.976	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF479	HGNC	ENSG00000185177				38	0	0	22	20	47.619
ZNF479	0	genome.wustl.edu	37	7	57188492	57188492	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	7	57188492	57188492	C	A	SNP	ZNF479	ENST00000331162	human	ensembl	74_37	-1	known	missense	c.630	p.E210D	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF479	HGNC	ENSG00000185177				40	0	0	23	21	47.7273
ZNF107	0	genome.wustl.edu	37	7	64167982	64167982	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	7	64167982	64167982	C	A	SNP	ZNF107	ENST00000344930	human	ensembl	74_37	+1	known	missense	c.1300	p.H434N	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF107	HGNC	ENSG00000196247				75	0	0	66	5	7.04225
AUTS2	0	genome.wustl.edu	37	7	69364285	69364285	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	7	69364285	69364285	T	G	SNP	AUTS2	ENST00000342771	human	ensembl	74_37	+1	known	missense	c.323	p.L108R	1.000	NULL	prints_AUTS2	-	no_errors	AUTS2	HGNC	ENSG00000158321				105	0	0	95	36	27.4809
TYW1B	0	genome.wustl.edu	37	7	72093957	72093957	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	7	72093957	72093957	A	G	SNP	TYW1B	ENST00000343721	human	ensembl	74_37	-1	known	missense	c.410	p.M137T	1.000	pfam_rSAM	pfam_rSAM,pfam_tRNA_wybutosine-synth	-	no_errors	TYW1B	HGNC	ENSG00000254184				9	0	0	17	7	29.1667
ABCB4	0	genome.wustl.edu	37	7	87035760	87035760	+	Silent	SNP	A	A	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	7	87035760	87035760	A	G	SNP	ABCB4	ENST00000265723	human	ensembl	74_37	-1	known	silent	c.3351	p.A1117	0.007	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,pfam_Zeta_toxin_domain,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB4	HGNC	ENSG00000005471				76	0	0	85	22	20.5607
ZNF804B	0	genome.wustl.edu	37	7	88964302	88964302	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	7	88964302	88964302	A	T	SNP	ZNF804B	ENST00000333190	human	ensembl	74_37	+1	known	missense	c.2006	p.H669L	0.000	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804B	HGNC	ENSG00000182348				103	0	0	101	30	22.9008
STEAP1	0	genome.wustl.edu	37	7	89790313	89790313	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	7	89790313	89790313	A	C	SNP	STEAP1	ENST00000297205	human	ensembl	74_37	+1	known	missense	c.279	p.E93D	0.883	NULL	pfam_Fe3_Rdtase_TM_dom	-	no_errors	STEAP1	HGNC	ENSG00000164647				163	0	0	198	20	9.17431
YWHAZ	0	genome.wustl.edu	37	8	101932970	101932970	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	8	101932970	101932970	G	A	SNP	YWHAZ	ENST00000353245	human	ensembl	74_37	-1	known	missense	c.689	p.S230L	1.000	pfam_14-3-3_domain,superfamily_14-3-3_domain,smart_14-3-3_domain,pirsf_14-3-3,prints_14-3-3	pfam_14-3-3_domain,superfamily_14-3-3_domain,smart_14-3-3_domain,pirsf_14-3-3,prints_14-3-3	-	no_errors	YWHAZ	HGNC	ENSG00000164924				101	0	0	211	51	19.4656
PKHD1L1	0	genome.wustl.edu	37	8	110424511	110424511	+	Silent	SNP	G	G	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	8	110424511	110424511	G	A	SNP	PKHD1L1	ENST00000378402	human	ensembl	74_37	+1	known	silent	c.2103	p.G701	0.996	NULL	pfam_IPT,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038				83	0	0	131	10	7.0922
PKHD1L1	0	genome.wustl.edu	37	8	110527434	110527434	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	8	110527434	110527434	A	C	SNP	PKHD1L1	ENST00000378402	human	ensembl	74_37	+1	known	missense	c.11589	p.Q3863H	1.000	NULL	pfam_IPT,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038				19	0	0	27	4	12.9032
CSMD3	0	genome.wustl.edu	37	8	113529404	113529404	+	Silent	SNP	G	G	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	8	113529404	113529404	G	T	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	silent	c.4615	p.R1539	1.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				78	0	0	121	17	12.3188
TMEM65	0	genome.wustl.edu	37	8	125334366	125334366	+	Silent	SNP	C	C	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	8	125334366	125334366	C	A	SNP	TMEM65	ENST00000297632	human	ensembl	74_37	-1	known	silent	c.495	p.V165	0.994	pfam_Transmembrane_protein_65	pfam_Transmembrane_protein_65	-	no_errors	TMEM65	HGNC	ENSG00000164983				102	0	0	190	20	9.52381
DLC1	0	genome.wustl.edu	37	8	12957933	12957933	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	8	12957933	12957933	C	T	SNP	DLC1	ENST00000276297	human	ensembl	74_37	-1	known	missense	c.1913	p.G638D	1.000	NULL	pfam_START_lipid-bd_dom,pfam_RhoGAP_dom,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom,pfscan_RhoGAP_dom	-	no_errors	DLC1	HGNC	ENSG00000164741				187	0	0	157	45	22.2772
DLC1	0	genome.wustl.edu	37	8	12958076	12958076	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	8	12958076	12958076	C	A	SNP	DLC1	ENST00000276297	human	ensembl	74_37	-1	known	missense	c.1770	p.E590D	0.991	NULL	pfam_START_lipid-bd_dom,pfam_RhoGAP_dom,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom,pfscan_RhoGAP_dom	-	no_errors	DLC1	HGNC	ENSG00000164741				94	0	0	89	24	21.2389
EFR3A	0	genome.wustl.edu	37	8	132962265	132962265	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	8	132962265	132962265	G	T	SNP	EFR3A	ENST00000254624	human	ensembl	74_37	+1	known	missense	c.416	p.R139L	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	EFR3A	HGNC	ENSG00000132294				25	0	0	48	7	12.7273
PLEC	0	genome.wustl.edu	37	8	144993129	144993129	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	8	144993129	144993129	G	C	SNP	PLEC	ENST00000322810	human	ensembl	74_37	-1	known	missense	c.11271	p.I3757M	1.000	NULL	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209				108	0	0	240	28	10.4478
NRG1	0	genome.wustl.edu	37	8	32621751	32621751	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	8	32621751	32621751	A	G	SNP	NRG1	ENST00000338921	human	ensembl	74_37	+1	known	missense	c.1778	p.D593G	0.995	pfam_Neuregulin_1_C	pfam_Neuregulin_1_C,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Ig-like_dom,prints_Neuregulin	-	no_errors	NRG1	HGNC	ENSG00000157168				74	0	0	76	7	8.43373
PRDM14	0	genome.wustl.edu	37	8	70981815	70981815	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	8	70981815	70981815	C	T	SNP	PRDM14	ENST00000276594	human	ensembl	74_37	-1	known	nonsense	c.281	p.W94*	0.302	NULL	pfam_Znf_C2H2,pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM14	HGNC	ENSG00000147596				25	0	0	17	5	22.7273
DEFB106B	0	genome.wustl.edu	37	8	7340238	7340238	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	8	7340238	7340238	A	G	SNP	DEFB106B	ENST00000335479	human	ensembl	74_37	-1	known	missense	c.86	p.L29P	0.000	NULL	NULL	-	no_errors	DEFB106B	HGNC	ENSG00000187082				80	0	0	54	24	30.7692
RUNX1T1	0	genome.wustl.edu	37	8	93004118	93004118	+	Splice_Site	SNP	C	C	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	8	93004118	93004118	C	T	SNP	RUNX1T1	ENST00000436581	human	ensembl	74_37	-1	known	splice_site	c.774-1	e6-1	1.000	-	-	-	no_errors	RUNX1T1	HGNC	ENSG00000079102				70	0	0	70	31	30.6931
RUNX1T1	0	genome.wustl.edu	37	8	93023265	93023265	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	8	93023265	93023265	A	C	SNP	RUNX1T1	ENST00000436581	human	ensembl	74_37	-1	known	missense	c.556	p.F186V	1.000	pfam_TAFH_NHR1,smart_TAFH_NHR1,pfscan_TAFH_NHR1,prints_ETO	pfam_NHR2,pfam_TAFH_NHR1,pfam_Znf_MYND,smart_TAFH_NHR1,pfscan_TAFH_NHR1,pfscan_Znf_MYND,prints_ETO,prints_MTG8	-	no_errors	RUNX1T1	HGNC	ENSG00000079102				133	0	0	111	37	25
POP1	0	genome.wustl.edu	37	8	99139913	99139913	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	8	99139913	99139913	A	G	SNP	POP1	ENST00000349693	human	ensembl	74_37	+1	known	missense	c.233	p.K78R	0.020	NULL	pfam_RNase_P/MRP_POP1,pfam_POPLD	-	no_errors	POP1	HGNC	ENSG00000104356				136	0	0	272	53	16.3077
OR13C2	0	genome.wustl.edu	37	9	107367876	107367876	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	9	107367876	107367876	T	A	SNP	OR13C2	ENST00000542196	human	ensembl	74_37	-1	known	missense	c.33	p.E11D	0.489	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR13C2	HGNC	ENSG00000257019				119	0	0	110	19	14.7287
PTGR1	0	genome.wustl.edu	37	9	114325440	114325440	+	Silent	SNP	C	C	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	9	114325440	114325440	C	G	SNP	PTGR1	ENST00000309195	human	ensembl	74_37	-1	known	silent	c.951	p.L317	1.000	superfamily_GroES-like,smart_PKS_ER,tigrfam_B4_12hDH	pfam_ADH_C,superfamily_GroES-like,smart_PKS_ER,tigrfam_B4_12hDH	-	no_errors	PTGR1	HGNC	ENSG00000106853				96	0	0	81	26	24.2991
COL27A1	0	genome.wustl.edu	37	9	116930585	116930585	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	9	116930585	116930585	C	A	SNP	COL27A1	ENST00000356083	human	ensembl	74_37	+1	known	missense	c.750	p.F250L	0.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL27A1	HGNC	ENSG00000196739				122	0	0	121	16	11.6788
HSPA5	0	genome.wustl.edu	37	9	127999057	127999057	+	Silent	SNP	G	G	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	9	127999057	127999057	G	C	SNP	HSPA5	ENST00000324460	human	ensembl	74_37	-1	known	silent	c.1779	p.T593	1.000	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA5	HGNC	ENSG00000044574				213	0	0	261	43	14.1447
SWI5	0	genome.wustl.edu	37	9	131038446	131038446	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	9	131038446	131038446	G	A	SNP	SWI5	ENST00000320188	human	ensembl	74_37	+1	known	missense	c.22	p.D8N	0.000	NULL	pfam_DNA-repair_Swi5	-	no_errors	SWI5	HGNC	ENSG00000175854				151	0	0	162	22	11.9565
MPDZ	0	genome.wustl.edu	37	9	13217225	13217225	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	9	13217225	13217225	T	G	SNP	MPDZ	ENST00000319217	human	ensembl	74_37	-1	known	missense	c.1155	p.Q385H	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	MPDZ	HGNC	ENSG00000107186				22	0	0	12	4	25
TTF1	0	genome.wustl.edu	37	9	135278082	135278082	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	9	135278082	135278082	C	A	SNP	TTF1	ENST00000334270	human	ensembl	74_37	-1	known	missense	c.127	p.V43L	0.000	NULL	superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	TTF1	HGNC	ENSG00000125482				135	0	0	131	28	17.6101
EHMT1	0	genome.wustl.edu	37	9	140711934	140711934	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	9	140711934	140711934	G	A	SNP	EHMT1	ENST00000460843	human	ensembl	74_37	+1	known	missense	c.3418	p.V1140M	1.000	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	pfam_Ankyrin_rpt,pfam_SET_dom,pfam_Pre-SET_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,prints_Ankyrin_rpt	-	no_errors	EHMT1	HGNC	ENSG00000181090				120	0	0	101	29	22.3077
TUBBP5	0	genome.wustl.edu	37	9	141070161	141070161	+	RNA	SNP	T	T	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	9	141070161	141070161	T	C	SNP	TUBBP5	ENST00000290377	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TUBBP5	HGNC	ENSG00000159247				88	0	0	93	6	6.06061
KCNV2	0	genome.wustl.edu	37	9	2718317	2718317	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	9	2718317	2718317	A	G	SNP	KCNV2	ENST00000382082	human	ensembl	74_37	+1	known	missense	c.578	p.K193R	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCNV2	HGNC	ENSG00000168263				12	0	0	26	11	29.7297
PCSK5	0	genome.wustl.edu	37	9	78790192	78790192	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	9	78790192	78790192	C	G	SNP	PCSK5	ENST00000376767	human	ensembl	74_37	+1	known	missense	c.2047	p.R683G	0.006	NULL	pfam_Peptidase_S8/S53_dom,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53_dom,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK5	HGNC	ENSG00000099139				8	0	0	16	5	23.8095
ENSG00000230303	0	genome.wustl.edu	37	9	88401246	88401246	+	RNA	SNP	A	A	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	9	88401246	88401246	A	G	SNP	ENSG00000230303	ENST00000456242	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.033	-	-	-	no_errors	RP11-213G2.2	Clone_based_vega_gene	ENSG00000230303				76	0	0	75	22	22.6804
TRMT2B	0	genome.wustl.edu	37	X	100278521	100278521	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	X	100278521	100278521	G	A	SNP	TRMT2B	ENST00000372935	human	ensembl	74_37	-1	known	missense	c.694	p.R232C	0.000	NULL	pfam_U5_MeTrfase,pfam_Small_mtfrase_dom	-	no_errors	TRMT2B	HGNC	ENSG00000188917				99	0	0	127	68	34.8718
WWC3	0	genome.wustl.edu	37	X	10046905	10046905	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	X	10046905	10046905	G	A	SNP	WWC3	ENST00000380861	human	ensembl	74_37	+1	known	missense	c.287	p.R96H	1.000	NULL	superfamily_C2_dom	-	no_errors	WWC3	HGNC	ENSG00000047644				95	0	0	94	136	59.1304
NRK	0	genome.wustl.edu	37	X	105142676	105142676	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	X	105142676	105142676	A	G	SNP	NRK	ENST00000428173	human	ensembl	74_37	+1	known	missense	c.680	p.D227G	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Citron,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom	-	no_errors	NRK	HGNC	ENSG00000123572				13	0	0	15	10	40
NRK	0	genome.wustl.edu	37	X	105193615	105193615	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	X	105193615	105193615	T	A	SNP	NRK	ENST00000428173	human	ensembl	74_37	+1	known	missense	c.4405	p.L1469M	1.000	pfam_Citron,smart_Citron	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Citron,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom	-	no_errors	NRK	HGNC	ENSG00000123572				46	0	0	61	24	28.2353
RGAG1	0	genome.wustl.edu	37	X	109697340	109697340	+	Silent	SNP	G	G	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	X	109697340	109697340	G	A	SNP	RGAG1	ENST00000465301	human	ensembl	74_37	+1	known	silent	c.3495	p.E1165	0.954	NULL	NULL	-	no_errors	RGAG1	HGNC	ENSG00000243978				63	0	0	86	41	32.2835
PAK3	0	genome.wustl.edu	37	X	110435361	110435361	+	Silent	SNP	A	A	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	X	110435361	110435361	A	C	SNP	PAK3	ENST00000360648	human	ensembl	74_37	+1	known	silent	c.945	p.S315	0.994	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_CRIB_dom,superfamily_Kinase-like_dom,smart_CRIB_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRIB_dom,pfscan_Prot_kinase_dom	-	no_errors	PAK3	HGNC	ENSG00000077264				101	0	0	75	99	56.8966
FANCB	0	genome.wustl.edu	37	X	14862735	14862735	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	X	14862735	14862735	G	C	SNP	FANCB	ENST00000324138	human	ensembl	74_37	-1	known	missense	c.2055	p.I685M	0.909	NULL	NULL	-	no_errors	FANCB	HGNC	ENSG00000181544				83	0	0	44	71	61.7391
SPRY3	0	genome.wustl.edu	37	X	155004392	155004392	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	X	155004392	155004392	T	A	SNP	SPRY3	ENST00000302805	human	ensembl	74_37	+1	known	missense	c.859	p.S287T	1.000	NULL	pfam_Sprouty	-	no_errors	SPRY3	HGNC	ENSG00000168939				132	0	0	93	52	35.8621
DMD	0	genome.wustl.edu	37	X	32429933	32429933	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	X	32429933	32429933	T	A	SNP	DMD	ENST00000357033	human	ensembl	74_37	-1	known	missense	c.4169	p.D1390V	1.000	pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947				51	0	0	24	20	45.4545
HUWE1	0	genome.wustl.edu	37	X	53655775	53655775	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	X	53655775	53655775	C	T	SNP	HUWE1	ENST00000262854	human	ensembl	74_37	-1	known	missense	c.1042	p.D348N	1.000	pfam_E3_Ub_ligase_DUF908,superfamily_ARM-type_fold	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/Ts_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758				45	0	0	52	32	38.0952
SYCP1	0	genome.wustl.edu	37	1	115420777	115420783	+	Frame_Shift_Del	DEL	GCTAGAG	GCTAGAG	-			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	GCTAGAG	GCTAGAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	1	115420777	115420783	GCTAGAG	-	DEL	SYCP1	ENST00000369518	human	ensembl	74_37	+1	known	frame_shift_del	c.864_870	p.L289fs	1.000:1.000:1.000:1.000:1.000:1.000:0.997	pfam_SCP-1	pfam_SCP-1	-	no_errors	SYCP1	HGNC	ENSG00000198765				76	0	0	105	6	5.40541
COPA	0	genome.wustl.edu	37	1	160260467	160260467	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	1	160260467	160260467	T	-	DEL	COPA	ENST00000368069	human	ensembl	74_37	-1	known	frame_shift_del	c.3457	p.I1153fs	1.000	pfam_Coatomer_asu_C,pirsf_Coatomer_asu	pfam_Coatomer_asu_C,pfam_Coatomer_WD-assoc_reg,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Coatomer_asu,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	COPA	HGNC	ENSG00000122218				283	0	0	432	33	7.09677
PLK3	0	genome.wustl.edu	37	1	45269063	45269064	+	Splice_Site	INS	-	-	AGC			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	1	45269063	45269064	-	AGC	INS	PLK3	ENST00000372201	human	ensembl	74_37	+1	known	splice_site_ins	c.1072+2_1072+1	e9-1	1.000:1.000	-	-	-	no_errors	PLK3	HGNC	ENSG00000173846				75	0	0	84	7	7.69231
NEURL	0	genome.wustl.edu	37	10	105331459	105331460	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	10	105331459	105331460	-	T	INS	NEURL	ENST00000369780	human	ensembl	74_37	+1	known	frame_shift_ins	c.529_530	p.R177fs	1.000:0.999	smart_Neu_Z,pfscan_Neu_Z	pfam_Neu_Z,smart_Neu_Z,pfscan_Neu_Z,pfscan_Znf_RING	-	no_errors	NEURL	HGNC	ENSG00000107954				91	0	0	142	21	12.8834
APPBP2	0	genome.wustl.edu	37	17	58538255	58538255	+	RNA	DEL	T	T	-			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	17	58538255	58538255	T	-	DEL	APPBP2	ENST00000592995	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	APPBP2	HGNC	ENSG00000062725				12	0	0	23	6	20.6897
ZNF284	0	genome.wustl.edu	37	19	44590983	44590984	+	Frame_Shift_Del	DEL	GA	GA	-			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	19	44590983	44590984	GA	-	DEL	ZNF284	ENST00000421176	human	ensembl	74_37	+1	known	frame_shift_del	c.1352_1353	p.R453fs	0.928:0.945	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF284	HGNC	ENSG00000186026				125	0	0	133	55	29.2553
TRAK1	0	genome.wustl.edu	37	3	42251582	42251583	+	In_Frame_Ins	INS	-	-	AGA			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	3	42251582	42251583	-	AGA	INS	TRAK1	ENST00000341421	human	ensembl	74_37	+1	known	in_frame_ins	c.1894_1895	p.633in_frame_insK	0.356:0.350	NULL	pfam_HAP1_N,pfam_Traffickng_kinesin-bd_prot_dom	-	no_errors	TRAK1	HGNC	ENSG00000182606				130	1	0.763359	140	16	10.2564
RFC1	0	genome.wustl.edu	37	4	39343980	39343984	+	Frame_Shift_Del	DEL	ATGTA	ATGTA	-			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	ATGTA	ATGTA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	4	39343980	39343984	ATGTA	-	DEL	RFC1	ENST00000381897	human	ensembl	74_37	-1	known	frame_shift_del	c.316_312	p.T105fs	0.997:0.994:1.000:1.000:1.000	superfamily_P-loop_NTPase,pirsf_DNA_replication_fac_C_lsu	pfam_DNA_replication_fac_RFC1_C,pfam_BRCT_dom,pfam_ATPase_AAA_core,superfamily_DNA_pol3_clamp-load_cplx_C,superfamily_P-loop_NTPase,superfamily_BRCT_dom,smart_BRCT_dom,smart_AAA+_ATPase,pirsf_DNA_replication_fac_C_lsu,pfscan_BRCT_dom	-	no_errors	RFC1	HGNC	ENSG00000035928				140	0	0	118	21	15.1079
NOX3	0	genome.wustl.edu	37	6	155750138	155750139	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	6	155750138	155750139	-	G	INS	NOX3	ENST00000159060	human	ensembl	74_37	-1	known	frame_shift_ins	c.935_934	p.K312fs	0.998:0.999	pfam_FAD-bd_8,pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl	pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl,prints_Cyt_b245_heavy_chain	-	no_errors	NOX3	HGNC	ENSG00000074771				149	0	0	252	52	17.1053
RABL6	0	genome.wustl.edu	37	9	139734246	139734256	+	Frame_Shift_Del	DEL	GACTGAAGAAT	GACTGAAGAAT	-			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08	GACTGAAGAAT	GACTGAAGAAT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	9	139734246	139734256	GACTGAAGAAT	-	DEL	RABL6	ENST00000371663	human	ensembl	74_37	+1	known	frame_shift_del	c.1862_1872	p.K623fs	0.904:0.748:0.703:0.696:0.881:0.997:1.000:1.000:1.000:1.000:0.987	NULL	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Rab_type,prints_Small_GTPase	-	no_errors	RABL6	HGNC	ENSG00000196642				70	0	0	105	8	7.07965
